Query 008796
Match_columns 553
No_of_seqs 171 out of 192
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 16:41:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2300 Uncharacterized conser 100.0 3.9E-75 8.4E-80 610.6 40.9 455 1-551 167-629 (629)
2 PF10345 Cohesin_load: Cohesin 99.9 2.2E-24 4.7E-29 241.7 40.4 409 2-471 180-606 (608)
3 KOG1130 Predicted G-alpha GTPa 99.8 1.7E-20 3.8E-25 196.0 16.7 271 177-481 57-354 (639)
4 KOG1840 Kinesin light chain [C 99.8 5.7E-17 1.2E-21 177.6 33.2 272 172-474 198-482 (508)
5 KOG1130 Predicted G-alpha GTPa 99.8 7.1E-18 1.5E-22 176.6 15.7 232 243-484 59-317 (639)
6 KOG4626 O-linked N-acetylgluco 99.8 1.2E-17 2.7E-22 181.2 16.6 251 171-473 214-487 (966)
7 KOG1840 Kinesin light chain [C 99.7 1.2E-15 2.5E-20 167.4 29.3 236 238-479 198-446 (508)
8 TIGR00990 3a0801s09 mitochondr 99.6 8.5E-14 1.8E-18 156.0 26.9 243 174-477 330-577 (615)
9 PRK04841 transcriptional regul 99.6 4E-13 8.6E-18 155.7 32.6 261 181-477 458-766 (903)
10 KOG4626 O-linked N-acetylgluco 99.6 7.4E-15 1.6E-19 159.9 13.6 209 239-472 218-452 (966)
11 PRK11788 tetratricopeptide rep 99.5 7.1E-12 1.5E-16 130.8 29.8 239 179-470 39-277 (389)
12 PRK04841 transcriptional regul 99.5 2.4E-11 5.3E-16 140.9 32.6 267 182-479 416-728 (903)
13 KOG1941 Acetylcholine receptor 99.5 2.8E-12 6E-17 133.5 21.8 195 281-479 122-328 (518)
14 TIGR00990 3a0801s09 mitochondr 99.5 3.1E-12 6.8E-17 143.5 23.2 228 186-471 305-537 (615)
15 PRK11788 tetratricopeptide rep 99.5 5.9E-11 1.3E-15 123.9 30.2 236 176-471 70-311 (389)
16 TIGR02521 type_IV_pilW type IV 99.5 1.7E-11 3.6E-16 115.1 22.4 197 238-469 30-230 (234)
17 PRK15174 Vi polysaccharide exp 99.4 3.9E-11 8.4E-16 136.3 26.6 252 178-471 113-381 (656)
18 PRK11447 cellulose synthase su 99.3 1.1E-10 2.5E-15 140.1 25.2 235 178-470 464-739 (1157)
19 PRK15174 Vi polysaccharide exp 99.3 2.3E-10 4.9E-15 130.2 26.3 225 183-471 84-347 (656)
20 TIGR02521 type_IV_pilW type IV 99.3 3.4E-10 7.5E-15 106.2 22.3 198 174-430 30-231 (234)
21 PRK11447 cellulose synthase su 99.3 4.6E-10 1E-14 134.9 27.9 200 244-471 274-524 (1157)
22 KOG1941 Acetylcholine receptor 99.3 5.7E-10 1.2E-14 116.5 23.5 227 242-478 125-367 (518)
23 TIGR02917 PEP_TPR_lipo putativ 99.3 1.1E-09 2.3E-14 122.9 25.4 201 241-472 637-867 (899)
24 TIGR02917 PEP_TPR_lipo putativ 99.2 2E-09 4.4E-14 120.6 25.8 197 241-471 603-799 (899)
25 PRK09782 bacteriophage N4 rece 99.2 1.5E-09 3.1E-14 128.4 23.6 191 243-471 546-740 (987)
26 PRK12370 invasion protein regu 99.2 1.8E-09 3.9E-14 120.4 22.4 178 252-467 317-498 (553)
27 PRK09782 bacteriophage N4 rece 99.2 6.2E-09 1.4E-13 123.1 26.3 225 177-472 479-707 (987)
28 cd05804 StaR_like StaR_like; a 99.1 4.2E-08 9.1E-13 101.4 27.6 286 180-481 48-346 (355)
29 PRK12370 invasion protein regu 99.1 8.5E-09 1.8E-13 115.0 23.6 210 187-464 316-529 (553)
30 PRK11189 lipoprotein NlpI; Pro 99.1 1.9E-08 4.1E-13 103.6 22.3 197 238-471 63-265 (296)
31 COG3063 PilF Tfp pilus assembl 99.1 7.2E-09 1.6E-13 103.1 18.1 192 243-469 39-234 (250)
32 PF14938 SNAP: Soluble NSF att 99.1 1.6E-08 3.5E-13 103.5 21.0 209 239-459 35-251 (282)
33 cd05804 StaR_like StaR_like; a 99.0 1.2E-07 2.6E-12 98.0 25.7 238 167-446 106-351 (355)
34 KOG2002 TPR-containing nuclear 99.0 5.2E-08 1.1E-12 111.6 24.0 265 175-473 164-483 (1018)
35 TIGR03302 OM_YfiO outer membra 99.0 6.8E-08 1.5E-12 94.7 21.5 181 238-427 32-228 (235)
36 PF14938 SNAP: Soluble NSF att 99.0 5.8E-08 1.3E-12 99.4 21.8 182 280-470 34-224 (282)
37 KOG1126 DNA-binding cell divis 99.0 7.3E-09 1.6E-13 114.7 15.5 246 179-470 316-619 (638)
38 PRK11189 lipoprotein NlpI; Pro 98.9 1.1E-07 2.5E-12 97.9 21.7 220 175-453 64-285 (296)
39 PF13424 TPR_12: Tetratricopep 98.9 9.8E-09 2.1E-13 84.2 11.0 74 360-434 4-78 (78)
40 PF13429 TPR_15: Tetratricopep 98.9 9.8E-09 2.1E-13 103.8 12.6 228 182-470 15-242 (280)
41 COG3063 PilF Tfp pilus assembl 98.9 2.6E-07 5.7E-12 92.1 20.7 196 170-424 30-229 (250)
42 TIGR00540 hemY_coli hemY prote 98.9 8.2E-07 1.8E-11 95.4 26.1 245 175-472 118-400 (409)
43 TIGR03302 OM_YfiO outer membra 98.8 7E-07 1.5E-11 87.5 21.6 177 278-469 30-230 (235)
44 PRK10049 pgaA outer membrane p 98.8 8.2E-07 1.8E-11 102.9 25.6 246 175-471 49-339 (765)
45 PRK10747 putative protoheme IX 98.8 8.2E-07 1.8E-11 95.2 23.7 237 176-472 119-391 (398)
46 KOG1173 Anaphase-promoting com 98.8 7.3E-08 1.6E-12 105.5 15.4 203 176-432 313-519 (611)
47 PRK10049 pgaA outer membrane p 98.8 2.8E-06 6E-11 98.5 27.5 205 245-471 244-456 (765)
48 KOG1173 Anaphase-promoting com 98.7 1.9E-07 4.2E-12 102.2 15.7 198 244-472 317-519 (611)
49 PF13424 TPR_12: Tetratricopep 98.7 1.3E-07 2.8E-12 77.5 10.9 75 399-473 2-77 (78)
50 PF13429 TPR_15: Tetratricopep 98.7 2.2E-07 4.7E-12 94.0 14.5 229 176-471 45-277 (280)
51 PRK15179 Vi polysaccharide bio 98.7 4.9E-07 1.1E-11 103.7 19.0 166 243-432 53-218 (694)
52 KOG2002 TPR-containing nuclear 98.7 2.4E-06 5.2E-11 98.3 23.2 214 169-431 301-525 (1018)
53 KOG1155 Anaphase-promoting com 98.6 2.9E-06 6.2E-11 91.6 19.8 195 246-471 337-536 (559)
54 COG2956 Predicted N-acetylgluc 98.6 2.9E-05 6.4E-10 80.9 25.8 212 241-477 71-284 (389)
55 TIGR00540 hemY_coli hemY prote 98.6 1E-05 2.3E-10 87.0 23.1 214 181-439 159-407 (409)
56 KOG1126 DNA-binding cell divis 98.5 5.7E-07 1.2E-11 100.0 12.5 193 178-431 424-620 (638)
57 CHL00033 ycf3 photosystem I as 98.5 2.5E-06 5.5E-11 80.1 14.3 114 278-397 32-149 (168)
58 PRK10370 formate-dependent nit 98.5 7E-06 1.5E-10 80.3 17.6 116 252-391 52-174 (198)
59 KOG1129 TPR repeat-containing 98.5 2.1E-06 4.6E-11 89.4 14.3 95 320-431 360-458 (478)
60 CHL00033 ycf3 photosystem I as 98.5 2.2E-06 4.8E-11 80.5 13.4 113 358-474 32-145 (168)
61 KOG2003 TPR repeat-containing 98.5 5.8E-06 1.3E-10 88.9 17.4 203 242-472 457-690 (840)
62 PRK10747 putative protoheme IX 98.4 6.9E-05 1.5E-09 80.5 24.6 208 245-471 124-357 (398)
63 KOG1155 Anaphase-promoting com 98.4 7.9E-06 1.7E-10 88.2 15.7 194 182-430 337-535 (559)
64 KOG1129 TPR repeat-containing 98.4 4.2E-05 9.1E-10 79.9 20.3 202 243-472 227-459 (478)
65 KOG4162 Predicted calmodulin-b 98.4 8.7E-05 1.9E-09 84.2 24.0 260 171-473 429-785 (799)
66 PF09976 TPR_21: Tetratricopep 98.3 4E-05 8.7E-10 70.6 17.7 124 250-388 22-145 (145)
67 PLN03218 maturation of RBCL 1; 98.3 0.00018 3.8E-09 86.5 26.9 200 177-427 509-709 (1060)
68 KOG0548 Molecular co-chaperone 98.3 5.7E-05 1.2E-09 82.9 20.6 243 175-501 224-472 (539)
69 PLN03218 maturation of RBCL 1; 98.3 0.00023 5E-09 85.5 27.2 200 242-467 510-709 (1060)
70 PRK15359 type III secretion sy 98.3 7.1E-06 1.5E-10 76.0 10.8 95 243-391 28-122 (144)
71 PF09976 TPR_21: Tetratricopep 98.3 5.8E-05 1.3E-09 69.5 16.7 122 330-468 23-144 (145)
72 PRK15179 Vi polysaccharide bio 98.3 2.9E-05 6.4E-10 89.3 17.8 181 248-472 37-218 (694)
73 KOG0547 Translocase of outer m 98.3 0.00011 2.3E-09 80.2 20.8 241 175-475 326-570 (606)
74 PRK02603 photosystem I assembl 98.2 3.7E-05 8E-10 72.8 15.5 115 278-435 32-146 (172)
75 PRK10370 formate-dependent nit 98.2 7.2E-05 1.6E-09 73.2 17.9 159 238-438 15-180 (198)
76 KOG2003 TPR repeat-containing 98.2 4.1E-05 8.9E-10 82.5 17.1 203 231-465 411-615 (840)
77 PRK02603 photosystem I assembl 98.2 4.1E-05 9E-10 72.4 15.4 105 359-473 33-144 (172)
78 PRK15359 type III secretion sy 98.2 9.3E-06 2E-10 75.3 9.6 96 364-472 27-122 (144)
79 PRK10866 outer membrane biogen 98.2 0.00045 9.7E-09 69.9 22.3 175 243-426 36-236 (243)
80 TIGR02795 tol_pal_ybgF tol-pal 98.1 4.2E-05 9E-10 65.8 11.7 104 361-471 2-105 (119)
81 PLN03081 pentatricopeptide (PP 98.1 0.00037 8E-09 79.9 22.4 192 243-466 263-486 (697)
82 cd00189 TPR Tetratricopeptide 98.1 1.2E-05 2.7E-10 63.0 7.4 95 363-470 2-96 (100)
83 PLN03081 pentatricopeptide (PP 98.1 0.00036 7.9E-09 80.0 22.2 238 177-469 292-555 (697)
84 PF13414 TPR_11: TPR repeat; P 98.0 1.9E-05 4E-10 63.0 7.5 65 360-431 2-67 (69)
85 COG5010 TadD Flp pilus assembl 98.0 5.6E-05 1.2E-09 76.7 12.5 153 244-463 71-223 (257)
86 COG2956 Predicted N-acetylgluc 98.0 0.0011 2.4E-08 69.5 21.9 228 249-502 45-279 (389)
87 KOG1174 Anaphase-promoting com 98.0 0.0003 6.6E-09 75.5 18.1 190 247-470 308-499 (564)
88 PF12862 Apc5: Anaphase-promot 98.0 9.9E-05 2.2E-09 63.8 12.0 83 370-453 7-92 (94)
89 KOG0550 Molecular chaperone (D 98.0 0.00011 2.4E-09 78.7 13.8 178 244-474 174-353 (486)
90 PF13525 YfiO: Outer membrane 98.0 0.001 2.2E-08 65.1 19.7 175 239-422 5-198 (203)
91 PF12688 TPR_5: Tetratrico pep 97.9 0.00031 6.7E-09 64.0 14.0 101 362-469 2-102 (120)
92 KOG2076 RNA polymerase III tra 97.9 0.00056 1.2E-08 78.9 19.0 192 249-460 326-544 (895)
93 PRK14574 hmsH outer membrane p 97.9 0.0029 6.2E-08 74.5 25.4 237 191-465 260-507 (822)
94 PRK14574 hmsH outer membrane p 97.9 0.00061 1.3E-08 80.0 19.4 208 241-482 36-243 (822)
95 KOG2376 Signal recognition par 97.9 0.0018 3.9E-08 72.1 21.3 180 243-450 83-270 (652)
96 KOG1125 TPR repeat-containing 97.8 0.00041 9E-09 76.8 15.8 207 244-474 290-530 (579)
97 TIGR02552 LcrH_SycD type III s 97.8 0.00014 3E-09 64.9 10.0 100 360-472 16-115 (135)
98 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00037 8.1E-09 59.8 12.0 101 281-391 2-106 (119)
99 PLN03077 Protein ECB2; Provisi 97.8 0.0054 1.2E-07 72.1 25.3 125 241-388 325-482 (857)
100 PF12688 TPR_5: Tetratrico pep 97.8 0.00071 1.5E-08 61.6 13.7 98 241-343 3-101 (120)
101 COG5010 TadD Flp pilus assembl 97.8 0.00024 5.2E-09 72.2 11.7 125 241-385 102-226 (257)
102 KOG0547 Translocase of outer m 97.8 0.0015 3.2E-08 71.6 18.1 169 243-435 398-570 (606)
103 cd00189 TPR Tetratricopeptide 97.8 0.00033 7.2E-09 54.7 10.1 92 283-390 2-97 (100)
104 COG2909 MalT ATP-dependent tra 97.8 0.008 1.7E-07 69.8 25.0 260 179-467 419-684 (894)
105 KOG1125 TPR repeat-containing 97.7 0.0017 3.7E-08 72.1 18.7 250 181-463 291-563 (579)
106 PLN03088 SGT1, suppressor of 97.7 0.0002 4.4E-09 76.1 11.4 96 242-391 5-100 (356)
107 PLN03077 Protein ECB2; Provisi 97.7 0.0018 3.8E-08 76.1 20.1 124 242-388 225-381 (857)
108 PF12569 NARP1: NMDA receptor- 97.7 0.023 4.9E-07 63.8 27.7 114 362-482 195-345 (517)
109 TIGR02552 LcrH_SycD type III s 97.7 0.00039 8.5E-09 62.0 11.1 98 319-432 18-115 (135)
110 PRK15363 pathogenicity island 97.7 0.00034 7.4E-09 66.5 11.1 114 360-496 34-147 (157)
111 COG3071 HemY Uncharacterized e 97.7 0.0098 2.1E-07 63.8 22.6 245 171-469 114-388 (400)
112 PF13414 TPR_11: TPR repeat; P 97.7 0.00031 6.7E-09 55.9 8.8 64 239-310 3-67 (69)
113 COG2909 MalT ATP-dependent tra 97.7 0.012 2.6E-07 68.5 24.6 215 270-494 404-669 (894)
114 KOG0548 Molecular co-chaperone 97.6 0.012 2.6E-07 65.1 23.1 244 183-474 10-330 (539)
115 PF10345 Cohesin_load: Cohesin 97.6 0.15 3.3E-06 58.1 32.6 212 253-466 153-428 (608)
116 KOG2076 RNA polymerase III tra 97.6 0.0097 2.1E-07 69.0 22.7 96 360-467 413-508 (895)
117 PLN03088 SGT1, suppressor of 97.6 0.00047 1E-08 73.4 11.4 97 363-472 4-100 (356)
118 KOG1586 Protein required for f 97.6 0.0032 6.9E-08 63.6 16.4 148 295-467 28-179 (288)
119 KOG1128 Uncharacterized conser 97.6 0.00094 2E-08 75.8 13.9 193 237-473 422-618 (777)
120 PRK10153 DNA-binding transcrip 97.6 0.0013 2.8E-08 73.6 14.8 140 278-432 336-483 (517)
121 PRK15363 pathogenicity island 97.6 0.001 2.3E-08 63.3 12.1 67 360-433 68-134 (157)
122 COG0457 NrfG FOG: TPR repeat [ 97.5 0.055 1.2E-06 47.7 22.4 203 241-474 61-268 (291)
123 COG3071 HemY Uncharacterized e 97.5 0.018 4E-07 61.7 21.7 224 175-435 153-394 (400)
124 PF12895 Apc3: Anaphase-promot 97.5 0.001 2.2E-08 55.5 9.8 83 294-387 2-84 (84)
125 KOG1174 Anaphase-promoting com 97.5 0.0069 1.5E-07 65.4 18.0 181 243-461 338-524 (564)
126 PF13432 TPR_16: Tetratricopep 97.5 0.00035 7.5E-09 55.2 6.3 60 365-431 1-60 (65)
127 PF13525 YfiO: Outer membrane 97.4 0.024 5.3E-07 55.4 20.6 173 281-462 5-198 (203)
128 KOG2300 Uncharacterized conser 97.4 0.097 2.1E-06 57.8 26.4 293 170-483 207-526 (629)
129 PRK10866 outer membrane biogen 97.4 0.055 1.2E-06 54.8 22.8 173 281-466 32-236 (243)
130 PLN02789 farnesyltranstransfer 97.4 0.087 1.9E-06 55.6 24.7 217 170-455 34-268 (320)
131 PF12895 Apc3: Anaphase-promot 97.4 0.0017 3.7E-08 54.1 9.7 83 374-468 2-84 (84)
132 KOG0550 Molecular chaperone (D 97.3 0.012 2.5E-07 63.7 17.7 177 172-391 166-351 (486)
133 KOG4162 Predicted calmodulin-b 97.3 0.08 1.7E-06 60.9 24.9 206 241-474 325-545 (799)
134 KOG4555 TPR repeat-containing 97.3 0.0049 1.1E-07 57.5 12.4 107 272-390 34-144 (175)
135 KOG4340 Uncharacterized conser 97.3 0.015 3.3E-07 60.7 17.0 159 242-430 47-206 (459)
136 KOG1585 Protein required for f 97.2 0.073 1.6E-06 54.4 21.1 229 167-429 23-254 (308)
137 PRK14720 transcript cleavage f 97.2 0.015 3.1E-07 68.9 18.6 189 238-471 30-252 (906)
138 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.00094 2E-08 72.9 8.2 67 360-431 74-141 (453)
139 PRK10803 tol-pal system protei 97.2 0.071 1.5E-06 54.8 21.4 98 186-315 154-251 (263)
140 KOG4555 TPR repeat-containing 97.2 0.0052 1.1E-07 57.4 11.7 102 361-471 43-144 (175)
141 PF04733 Coatomer_E: Coatomer 97.2 0.00085 1.8E-08 69.7 7.3 152 246-427 109-261 (290)
142 PRK14720 transcript cleavage f 97.1 0.027 5.9E-07 66.6 19.6 225 184-477 40-289 (906)
143 PF13432 TPR_16: Tetratricopep 97.1 0.0017 3.6E-08 51.2 6.4 61 244-312 2-62 (65)
144 KOG1156 N-terminal acetyltrans 97.0 0.11 2.4E-06 59.0 22.1 229 189-467 9-244 (700)
145 KOG1128 Uncharacterized conser 97.0 0.0057 1.2E-07 69.7 12.2 162 281-471 398-582 (777)
146 COG4700 Uncharacterized protei 97.0 0.034 7.3E-07 54.9 15.4 136 284-436 92-227 (251)
147 PRK10153 DNA-binding transcrip 97.0 0.013 2.9E-07 65.6 14.6 140 314-471 335-482 (517)
148 KOG1586 Protein required for f 97.0 0.38 8.2E-06 49.1 23.1 188 250-451 84-276 (288)
149 PF12862 Apc5: Anaphase-promot 96.9 0.0047 1E-07 53.3 8.1 53 359-412 39-91 (94)
150 COG0457 NrfG FOG: TPR repeat [ 96.9 0.27 5.9E-06 43.2 22.3 207 173-434 57-268 (291)
151 KOG0543 FKBP-type peptidyl-pro 96.9 0.029 6.2E-07 60.5 15.6 116 278-432 205-321 (397)
152 KOG2376 Signal recognition par 96.9 1.2 2.6E-05 50.5 32.9 380 16-472 23-488 (652)
153 KOG3060 Uncharacterized conser 96.9 0.21 4.6E-06 51.3 20.6 168 239-433 52-222 (289)
154 KOG2471 TPR repeat-containing 96.8 0.08 1.7E-06 58.5 18.5 279 183-481 291-658 (696)
155 KOG0553 TPR repeat-containing 96.8 0.0067 1.5E-07 63.0 9.7 113 182-335 88-200 (304)
156 KOG3617 WD40 and TPR repeat-co 96.8 0.4 8.7E-06 56.0 23.9 386 42-475 704-1178(1416)
157 PF13176 TPR_7: Tetratricopept 96.7 0.0036 7.9E-08 44.6 5.2 35 404-438 1-35 (36)
158 KOG0553 TPR repeat-containing 96.7 0.0096 2.1E-07 61.9 10.2 100 358-470 78-177 (304)
159 KOG0495 HAT repeat protein [RN 96.7 0.26 5.6E-06 56.2 21.7 193 246-465 658-874 (913)
160 PF04733 Coatomer_E: Coatomer 96.7 0.018 3.9E-07 59.9 12.2 160 176-390 103-264 (290)
161 KOG0624 dsRNA-activated protei 96.7 0.25 5.3E-06 52.8 20.3 87 241-335 74-172 (504)
162 KOG1585 Protein required for f 96.7 0.56 1.2E-05 48.2 22.0 69 241-311 33-101 (308)
163 PF13176 TPR_7: Tetratricopept 96.7 0.004 8.7E-08 44.4 5.0 35 363-398 1-35 (36)
164 KOG0495 HAT repeat protein [RN 96.6 0.46 1E-05 54.3 23.1 257 177-469 442-746 (913)
165 PLN02789 farnesyltranstransfer 96.6 0.14 3E-06 54.1 18.4 187 250-467 48-246 (320)
166 KOG0543 FKBP-type peptidyl-pro 96.6 0.074 1.6E-06 57.4 16.4 175 147-345 177-357 (397)
167 PRK10803 tol-pal system protei 96.6 0.024 5.3E-07 58.2 12.0 84 250-338 154-237 (263)
168 PF13374 TPR_10: Tetratricopep 96.6 0.005 1.1E-07 43.8 4.9 37 361-397 2-38 (42)
169 KOG1839 Uncharacterized protei 96.5 0.06 1.3E-06 65.0 16.4 187 243-435 936-1132(1236)
170 PRK15331 chaperone protein Sic 96.5 0.017 3.7E-07 55.5 9.5 114 360-500 36-149 (165)
171 PF09986 DUF2225: Uncharacteri 96.5 0.021 4.5E-07 57.0 10.6 98 294-391 90-195 (214)
172 COG4235 Cytochrome c biogenesi 96.5 0.018 3.8E-07 59.9 10.2 99 361-472 156-257 (287)
173 PF00515 TPR_1: Tetratricopept 96.4 0.0073 1.6E-07 41.7 4.8 31 361-391 1-31 (34)
174 PF12968 DUF3856: Domain of Un 96.4 0.27 5.8E-06 45.4 15.9 116 359-474 5-132 (144)
175 KOG1127 TPR repeat-containing 96.3 0.14 2.9E-06 60.6 17.1 192 247-469 466-657 (1238)
176 PF12569 NARP1: NMDA receptor- 96.3 0.42 9.1E-06 53.8 20.6 190 241-457 196-390 (517)
177 PF08631 SPO22: Meiosis protei 96.3 1.1 2.4E-05 46.1 22.1 169 249-431 3-186 (278)
178 COG4783 Putative Zn-dependent 96.2 0.2 4.4E-06 55.2 17.1 113 242-391 343-455 (484)
179 PF07719 TPR_2: Tetratricopept 96.2 0.0099 2.1E-07 40.6 4.8 31 361-391 1-31 (34)
180 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.032 6.8E-07 61.3 10.8 71 399-472 72-142 (453)
181 PF12968 DUF3856: Domain of Un 96.2 0.19 4.2E-06 46.3 14.0 115 281-397 7-136 (144)
182 PF13374 TPR_10: Tetratricopep 96.2 0.011 2.3E-07 42.0 5.0 35 401-435 1-35 (42)
183 COG2976 Uncharacterized protei 96.1 1.5 3.3E-05 43.5 20.5 180 255-472 4-189 (207)
184 PF13371 TPR_9: Tetratricopept 96.0 0.034 7.5E-07 44.4 7.6 61 246-314 2-62 (73)
185 COG4783 Putative Zn-dependent 96.0 0.57 1.2E-05 51.8 18.9 148 240-431 307-454 (484)
186 PF10300 DUF3808: Protein of u 95.9 1.5 3.2E-05 48.7 22.2 287 71-392 47-378 (468)
187 PRK11906 transcriptional regul 95.9 0.24 5.3E-06 54.6 15.7 136 283-431 257-401 (458)
188 PF13371 TPR_9: Tetratricopept 95.9 0.025 5.5E-07 45.2 6.3 59 368-433 2-60 (73)
189 PF03704 BTAD: Bacterial trans 95.8 0.3 6.5E-06 44.5 14.0 110 364-479 9-134 (146)
190 KOG3060 Uncharacterized conser 95.8 0.55 1.2E-05 48.4 16.5 166 177-392 54-222 (289)
191 KOG1464 COP9 signalosome, subu 95.7 0.74 1.6E-05 48.0 17.5 214 238-456 64-286 (440)
192 KOG1127 TPR repeat-containing 95.7 0.5 1.1E-05 56.1 18.1 133 287-434 568-703 (1238)
193 PRK15331 chaperone protein Sic 95.7 0.16 3.4E-06 49.0 11.8 62 362-430 72-133 (165)
194 PF10602 RPN7: 26S proteasome 95.5 0.56 1.2E-05 45.4 15.3 129 254-391 11-143 (177)
195 KOG1070 rRNA processing protei 95.5 1.3 2.8E-05 54.5 20.7 114 152-312 1446-1561(1710)
196 KOG2047 mRNA splicing factor [ 95.5 6.5 0.00014 45.4 25.4 284 178-473 105-501 (835)
197 KOG3616 Selective LIM binding 95.4 2.2 4.8E-05 49.6 21.2 110 365-476 665-799 (1636)
198 COG4785 NlpI Lipoprotein NlpI, 95.4 0.36 7.8E-06 48.9 13.6 206 238-457 64-290 (297)
199 KOG2471 TPR repeat-containing 95.4 0.12 2.5E-06 57.2 10.7 239 143-393 108-367 (696)
200 PF14559 TPR_19: Tetratricopep 95.3 0.026 5.6E-07 44.5 4.4 53 372-431 2-54 (68)
201 PF13181 TPR_8: Tetratricopept 95.3 0.039 8.5E-07 37.8 4.7 31 361-391 1-31 (34)
202 COG4700 Uncharacterized protei 95.3 0.083 1.8E-06 52.2 8.4 96 364-469 92-187 (251)
203 PF14559 TPR_19: Tetratricopep 95.1 0.045 9.8E-07 43.1 5.1 56 250-313 2-57 (68)
204 PRK11906 transcriptional regul 95.1 0.25 5.5E-06 54.4 12.5 136 320-471 257-401 (458)
205 PF02259 FAT: FAT domain; Int 95.0 4.2 9.2E-05 41.8 20.9 130 172-330 143-304 (352)
206 KOG1839 Uncharacterized protei 94.9 0.28 6.1E-06 59.5 12.9 202 279-486 930-1144(1236)
207 COG4105 ComL DNA uptake lipopr 94.8 3.7 8E-05 42.3 19.0 177 239-424 34-226 (254)
208 PF10300 DUF3808: Protein of u 94.7 1.1 2.3E-05 49.9 16.4 144 168-347 222-373 (468)
209 PF00515 TPR_1: Tetratricopept 94.7 0.078 1.7E-06 36.5 4.8 30 402-431 1-30 (34)
210 COG2976 Uncharacterized protei 94.6 1 2.2E-05 44.7 14.1 101 281-391 89-189 (207)
211 PF09986 DUF2225: Uncharacteri 94.5 0.56 1.2E-05 46.9 12.4 94 375-468 91-191 (214)
212 KOG2796 Uncharacterized conser 94.4 5.7 0.00012 41.5 19.3 198 186-412 133-333 (366)
213 COG4235 Cytochrome c biogenesi 94.3 0.62 1.3E-05 48.7 12.5 105 267-392 147-258 (287)
214 PF09295 ChAPs: ChAPs (Chs5p-A 94.3 1.6 3.4E-05 47.7 16.1 120 244-386 174-293 (395)
215 PF04184 ST7: ST7 protein; In 94.2 2 4.4E-05 47.9 16.7 143 246-424 175-317 (539)
216 PF09295 ChAPs: ChAPs (Chs5p-A 94.2 0.34 7.3E-06 52.8 10.8 105 337-463 185-289 (395)
217 COG1729 Uncharacterized protei 94.2 0.43 9.4E-06 49.2 10.9 95 289-391 149-245 (262)
218 PF07719 TPR_2: Tetratricopept 94.1 0.13 2.8E-06 35.0 4.8 31 402-432 1-31 (34)
219 PF10602 RPN7: 26S proteasome 94.0 0.97 2.1E-05 43.7 12.6 105 360-468 35-139 (177)
220 COG1729 Uncharacterized protei 93.9 0.5 1.1E-05 48.7 10.6 97 364-467 144-240 (262)
221 KOG3081 Vesicle coat complex C 93.6 1.8 4E-05 44.9 14.0 152 246-429 115-268 (299)
222 PF03704 BTAD: Bacterial trans 93.6 2.8 6E-05 38.1 14.2 122 242-399 9-134 (146)
223 KOG3617 WD40 and TPR repeat-co 93.5 3.7 8.1E-05 48.4 17.6 235 237-494 811-1072(1416)
224 PF13181 TPR_8: Tetratricopept 93.4 0.18 3.8E-06 34.5 4.6 32 402-433 1-32 (34)
225 KOG3081 Vesicle coat complex C 93.0 3.4 7.3E-05 43.0 14.8 155 281-464 108-263 (299)
226 KOG4234 TPR repeat-containing 92.5 2.2 4.8E-05 42.9 12.4 103 358-468 92-194 (271)
227 KOG3616 Selective LIM binding 92.5 24 0.00053 41.5 21.9 117 176-307 655-791 (1636)
228 KOG3785 Uncharacterized conser 92.4 2.7 5.8E-05 45.4 13.6 223 244-483 96-357 (557)
229 KOG1070 rRNA processing protei 92.3 7.5 0.00016 48.3 18.6 170 267-469 1449-1627(1710)
230 smart00028 TPR Tetratricopepti 91.6 0.24 5.2E-06 31.0 3.2 29 362-390 2-30 (34)
231 PF12739 TRAPPC-Trs85: ER-Golg 91.5 25 0.00053 38.5 21.1 176 175-392 209-401 (414)
232 COG0790 FOG: TPR repeat, SEL1 91.4 16 0.00034 37.1 17.9 117 280-416 108-236 (292)
233 KOG0624 dsRNA-activated protei 91.4 24 0.00052 38.3 24.2 173 242-435 41-222 (504)
234 KOG4340 Uncharacterized conser 91.3 2.9 6.3E-05 44.3 12.3 181 250-465 21-201 (459)
235 PF13512 TPR_18: Tetratricopep 91.3 3.5 7.6E-05 38.9 11.8 90 281-376 10-99 (142)
236 KOG1156 N-terminal acetyltrans 91.1 16 0.00035 42.2 18.6 189 249-468 17-211 (700)
237 KOG3783 Uncharacterized conser 91.1 32 0.00069 39.0 25.0 217 244-472 272-521 (546)
238 PF13428 TPR_14: Tetratricopep 91.0 0.45 9.8E-06 35.0 4.5 30 362-391 2-31 (44)
239 PF11817 Foie-gras_1: Foie gra 90.3 3.8 8.2E-05 41.5 12.0 87 377-464 154-240 (247)
240 PF08631 SPO22: Meiosis protei 90.1 25 0.00053 36.2 25.9 118 173-312 33-152 (278)
241 PF08626 TRAPPC9-Trs120: Trans 90.1 4.1 8.8E-05 50.4 14.1 188 278-466 239-469 (1185)
242 PF04053 Coatomer_WDAD: Coatom 90.0 5 0.00011 44.5 13.5 159 249-462 271-435 (443)
243 PF13174 TPR_6: Tetratricopept 89.9 0.52 1.1E-05 31.6 3.8 29 362-390 1-29 (33)
244 KOG3785 Uncharacterized conser 89.8 16 0.00035 39.6 16.3 171 250-440 33-220 (557)
245 KOG4322 Anaphase-promoting com 89.7 37 0.00081 37.7 20.2 180 281-471 200-382 (482)
246 COG4785 NlpI Lipoprotein NlpI, 89.3 6 0.00013 40.3 12.1 97 278-386 62-158 (297)
247 PF13512 TPR_18: Tetratricopep 89.2 4.5 9.7E-05 38.2 10.6 88 241-333 12-99 (142)
248 PF04184 ST7: ST7 protein; In 88.8 22 0.00047 40.1 16.9 167 254-436 215-419 (539)
249 PF07721 TPR_4: Tetratricopept 88.5 0.51 1.1E-05 31.2 2.8 25 362-386 2-26 (26)
250 COG4649 Uncharacterized protei 88.3 8.5 0.00018 38.0 12.0 135 246-389 46-195 (221)
251 KOG4648 Uncharacterized conser 88.1 0.7 1.5E-05 49.5 4.9 93 183-313 105-197 (536)
252 PF10516 SHNi-TPR: SHNi-TPR; 87.5 1.1 2.3E-05 33.0 4.1 34 402-435 1-34 (38)
253 COG3898 Uncharacterized membra 87.4 51 0.0011 36.4 21.4 245 176-470 121-391 (531)
254 PF13428 TPR_14: Tetratricopep 87.3 1.2 2.5E-05 32.8 4.4 30 403-432 2-31 (44)
255 KOG4648 Uncharacterized conser 87.3 1.3 2.9E-05 47.5 6.4 121 361-495 97-220 (536)
256 KOG1464 COP9 signalosome, subu 87.2 7.7 0.00017 40.7 11.6 223 250-486 38-276 (440)
257 KOG1915 Cell cycle control pro 87.1 22 0.00048 40.0 15.6 220 187-456 378-610 (677)
258 COG0790 FOG: TPR repeat, SEL1 86.6 14 0.00031 37.4 13.5 155 292-473 52-222 (292)
259 KOG0545 Aryl-hydrocarbon recep 86.3 6.3 0.00014 40.8 10.3 99 283-391 180-294 (329)
260 PF06552 TOM20_plant: Plant sp 86.1 7.5 0.00016 38.3 10.4 66 239-309 25-101 (186)
261 COG5159 RPN6 26S proteasome re 85.8 43 0.00094 35.6 16.2 201 239-445 45-249 (421)
262 PF07721 TPR_4: Tetratricopept 85.6 0.93 2E-05 30.0 2.8 23 404-426 3-25 (26)
263 PF10579 Rapsyn_N: Rapsyn N-te 85.2 9.5 0.00021 32.7 9.3 75 360-438 5-79 (80)
264 smart00028 TPR Tetratricopepti 85.1 1.4 3.1E-05 27.3 3.5 30 282-311 2-31 (34)
265 KOG2053 Mitochondrial inherita 84.7 99 0.0022 37.2 22.1 162 246-429 50-217 (932)
266 PF10952 DUF2753: Protein of u 84.7 9.5 0.00021 35.5 9.7 91 405-499 4-103 (140)
267 PF10579 Rapsyn_N: Rapsyn N-te 84.0 4.8 0.0001 34.5 7.0 60 415-477 19-78 (80)
268 KOG2796 Uncharacterized conser 83.8 5.4 0.00012 41.7 8.6 113 184-328 221-333 (366)
269 KOG4234 TPR repeat-containing 83.7 10 0.00022 38.3 10.2 95 284-391 98-198 (271)
270 PF08626 TRAPPC9-Trs120: Trans 83.4 1.3E+02 0.0028 37.6 22.3 208 238-452 241-553 (1185)
271 KOG4642 Chaperone-dependent E3 82.6 4.7 0.0001 41.5 7.6 88 290-393 19-110 (284)
272 KOG0551 Hsp90 co-chaperone CNS 82.6 11 0.00023 40.6 10.4 73 356-431 76-148 (390)
273 COG3118 Thioredoxin domain-con 82.0 12 0.00027 39.4 10.5 102 363-471 136-265 (304)
274 KOG1550 Extracellular protein 81.5 84 0.0018 35.8 18.0 227 187-472 261-505 (552)
275 KOG4507 Uncharacterized conser 81.4 1.3 2.9E-05 50.2 3.4 94 283-391 609-706 (886)
276 COG4105 ComL DNA uptake lipopr 80.9 74 0.0016 33.0 20.4 174 280-463 33-225 (254)
277 PF10516 SHNi-TPR: SHNi-TPR; 80.5 2.7 5.9E-05 30.8 3.7 32 361-392 1-32 (38)
278 KOG1463 26S proteasome regulat 80.2 94 0.002 33.8 18.1 203 239-447 48-254 (411)
279 KOG2041 WD40 repeat protein [G 79.7 1.4E+02 0.003 35.5 18.4 110 358-468 793-936 (1189)
280 PF13174 TPR_6: Tetratricopept 79.5 2.7 5.8E-05 28.0 3.3 27 404-430 2-28 (33)
281 PF14853 Fis1_TPR_C: Fis1 C-te 79.3 4 8.7E-05 32.1 4.6 28 363-390 3-30 (53)
282 KOG0545 Aryl-hydrocarbon recep 79.0 14 0.00031 38.3 9.6 106 185-310 188-293 (329)
283 PF15015 NYD-SP12_N: Spermatog 78.0 40 0.00086 37.5 13.1 131 157-309 160-290 (569)
284 KOG0551 Hsp90 co-chaperone CNS 76.9 10 0.00022 40.8 8.1 98 281-391 81-183 (390)
285 PF13431 TPR_17: Tetratricopep 76.6 1.9 4.2E-05 30.3 1.9 32 384-422 2-33 (34)
286 KOG2047 mRNA splicing factor [ 76.1 1.6E+02 0.0035 34.6 17.5 104 283-391 349-455 (835)
287 KOG2581 26S proteasome regulat 75.5 1.4E+02 0.003 33.2 16.2 142 289-439 134-284 (493)
288 PF13431 TPR_17: Tetratricopep 75.3 3.1 6.7E-05 29.3 2.7 21 361-381 13-33 (34)
289 PF06552 TOM20_plant: Plant sp 74.8 10 0.00022 37.4 7.0 66 361-433 25-104 (186)
290 PF09613 HrpB1_HrpK: Bacterial 73.2 35 0.00075 33.0 10.1 59 317-387 9-70 (160)
291 COG5159 RPN6 26S proteasome re 72.5 1.4E+02 0.0031 31.9 16.3 226 250-486 14-249 (421)
292 KOG4507 Uncharacterized conser 71.6 3.6 7.7E-05 46.9 3.4 97 363-471 609-705 (886)
293 PF00244 14-3-3: 14-3-3 protei 71.4 1.2E+02 0.0026 30.7 15.5 59 378-436 143-203 (236)
294 PF11817 Foie-gras_1: Foie gra 70.8 1.2E+02 0.0027 30.6 21.7 80 337-424 161-240 (247)
295 cd09034 BRO1_Alix_like Protein 70.3 1.3E+02 0.0027 31.8 14.7 119 358-477 108-286 (345)
296 TIGR03504 FimV_Cterm FimV C-te 70.2 14 0.0003 28.0 5.3 41 406-450 3-43 (44)
297 KOG2581 26S proteasome regulat 69.0 2E+02 0.0042 32.1 24.0 221 172-458 123-353 (493)
298 TIGR02561 HrpB1_HrpK type III 68.9 28 0.0006 33.4 8.2 60 318-389 10-72 (153)
299 PF07217 Het-C: Heterokaryon i 68.4 9.8 0.00021 43.4 6.0 146 138-313 69-247 (606)
300 COG4976 Predicted methyltransf 68.0 12 0.00027 38.4 6.0 148 371-542 5-152 (287)
301 PF05843 Suf: Suppressor of fo 67.9 57 0.0012 33.6 11.2 123 175-336 1-125 (280)
302 KOG1463 26S proteasome regulat 66.7 2E+02 0.0043 31.4 18.3 113 366-479 133-246 (411)
303 PF04910 Tcf25: Transcriptiona 65.5 1.9E+02 0.0042 31.2 15.0 150 232-391 36-223 (360)
304 PRK10941 hypothetical protein; 65.3 49 0.0011 34.4 10.1 68 238-313 180-247 (269)
305 COG3898 Uncharacterized membra 64.7 2.4E+02 0.0051 31.5 21.4 165 245-433 90-260 (531)
306 cd02679 MIT_spastin MIT: domai 63.2 16 0.00034 31.2 5.0 40 187-271 1-40 (79)
307 PF09670 Cas_Cas02710: CRISPR- 62.7 2.3E+02 0.005 30.7 15.7 138 241-392 133-272 (379)
308 PF04053 Coatomer_WDAD: Coatom 62.3 35 0.00075 38.0 8.8 95 262-387 334-428 (443)
309 PF10952 DUF2753: Protein of u 61.4 39 0.00084 31.6 7.4 53 284-336 4-68 (140)
310 KOG2561 Adaptor protein NUB1, 60.6 1.3E+02 0.0028 33.8 12.4 133 290-425 172-338 (568)
311 KOG4642 Chaperone-dependent E3 58.8 36 0.00077 35.3 7.4 71 365-442 48-118 (284)
312 cd09242 BRO1_ScBro1_like Prote 58.6 2.6E+02 0.0056 29.9 20.1 124 89-226 34-164 (348)
313 KOG4322 Anaphase-promoting com 58.5 3.1E+02 0.0067 30.8 24.6 99 361-460 353-457 (482)
314 KOG2041 WD40 repeat protein [G 58.3 3.9E+02 0.0085 32.0 23.3 158 252-428 747-936 (1189)
315 COG3014 Uncharacterized protei 58.2 1.5E+02 0.0033 32.3 12.2 91 301-391 41-155 (449)
316 KOG3364 Membrane protein invol 57.8 26 0.00057 33.2 5.8 70 317-390 31-100 (149)
317 KOG2908 26S proteasome regulat 57.4 1.9E+02 0.004 31.5 12.7 110 166-300 67-176 (380)
318 COG3118 Thioredoxin domain-con 55.7 2.8E+02 0.0061 29.5 16.3 141 248-416 143-286 (304)
319 PF13281 DUF4071: Domain of un 55.7 3.1E+02 0.0068 30.0 16.9 202 257-465 152-368 (374)
320 KOG1538 Uncharacterized conser 55.5 2.3E+02 0.0049 33.5 13.6 205 244-470 590-832 (1081)
321 KOG3783 Uncharacterized conser 55.4 3.7E+02 0.0081 30.8 19.2 178 233-432 339-521 (546)
322 KOG0686 COP9 signalosome, subu 55.2 1.7E+02 0.0037 32.5 12.1 103 280-387 149-255 (466)
323 PF15015 NYD-SP12_N: Spermatog 53.9 46 0.001 37.0 7.7 66 246-311 183-258 (569)
324 KOG0687 26S proteasome regulat 53.6 3.1E+02 0.0067 29.8 13.5 123 256-392 81-212 (393)
325 PF11207 DUF2989: Protein of u 53.4 2.5E+02 0.0054 28.2 12.4 58 360-421 140-197 (203)
326 KOG2610 Uncharacterized conser 52.6 3.5E+02 0.0076 29.7 21.4 216 152-428 53-273 (491)
327 KOG3824 Huntingtin interacting 52.5 40 0.00086 36.2 6.7 66 360-432 115-180 (472)
328 KOG1920 IkappaB kinase complex 52.5 2.7E+02 0.0058 34.9 14.2 15 291-305 890-904 (1265)
329 COG5187 RPN7 26S proteasome re 52.2 3.3E+02 0.0072 29.3 13.7 126 256-391 92-222 (412)
330 TIGR03504 FimV_Cterm FimV C-te 51.4 32 0.0007 26.0 4.4 25 365-389 3-27 (44)
331 TIGR02561 HrpB1_HrpK type III 50.2 95 0.0021 29.8 8.3 83 242-335 13-95 (153)
332 COG2178 Predicted RNA-binding 48.2 93 0.002 31.2 8.2 86 181-292 35-120 (204)
333 PF10255 Paf67: RNA polymerase 47.8 37 0.0008 37.4 6.0 73 318-393 122-196 (404)
334 PF04190 DUF410: Protein of un 47.5 3.3E+02 0.0072 27.9 14.9 57 257-319 68-124 (260)
335 PF14853 Fis1_TPR_C: Fis1 C-te 47.3 35 0.00076 26.8 4.2 27 242-268 4-30 (53)
336 PF02403 Seryl_tRNA_N: Seryl-t 46.8 61 0.0013 28.4 6.2 66 63-131 23-88 (108)
337 PF09613 HrpB1_HrpK: Bacterial 46.7 1.3E+02 0.0027 29.2 8.7 83 242-335 13-95 (160)
338 PF15605 Toxin_52: Putative to 46.3 66 0.0014 28.9 6.1 50 82-131 49-99 (103)
339 PF05843 Suf: Suppressor of fo 44.7 3.7E+02 0.008 27.6 13.6 20 289-308 9-28 (280)
340 PF04781 DUF627: Protein of un 44.5 1.8E+02 0.0038 26.6 8.7 100 325-430 3-106 (111)
341 PRK13184 pknD serine/threonine 43.9 82 0.0018 38.4 8.5 53 332-391 530-582 (932)
342 KOG1550 Extracellular protein 43.6 4.4E+02 0.0096 30.0 14.0 165 239-431 212-393 (552)
343 KOG0686 COP9 signalosome, subu 43.3 74 0.0016 35.2 7.2 102 181-309 156-257 (466)
344 cd09240 BRO1_Alix Protein-inte 42.6 2.7E+02 0.0059 29.8 11.5 118 359-477 117-290 (346)
345 PF04212 MIT: MIT (microtubule 41.8 69 0.0015 25.7 5.3 33 360-392 4-36 (69)
346 PF11207 DUF2989: Protein of u 41.8 2.6E+02 0.0057 28.1 10.3 79 289-380 114-197 (203)
347 cd09242 BRO1_ScBro1_like Prote 40.6 3.4E+02 0.0073 29.1 11.8 118 358-476 104-278 (348)
348 KOG0687 26S proteasome regulat 39.7 4E+02 0.0088 29.0 11.8 108 180-316 109-216 (393)
349 PF02259 FAT: FAT domain; Int 37.3 4.7E+02 0.01 26.7 29.2 118 314-436 142-292 (352)
350 KOG1308 Hsp70-interacting prot 37.2 15 0.00033 39.5 1.0 98 360-470 113-210 (377)
351 COG5187 RPN7 26S proteasome re 35.7 5.9E+02 0.013 27.5 13.9 72 356-435 110-181 (412)
352 PF04190 DUF410: Protein of un 35.6 5E+02 0.011 26.6 18.5 93 379-474 68-173 (260)
353 PF05531 NPV_P10: Nucleopolyhe 35.6 35 0.00077 28.9 2.7 41 62-102 11-51 (75)
354 PF10255 Paf67: RNA polymerase 35.2 71 0.0015 35.2 5.7 73 233-309 116-192 (404)
355 smart00101 14_3_3 14-3-3 homol 35.1 4.3E+02 0.0093 27.2 11.0 56 255-310 144-200 (244)
356 cd09239 BRO1_HD-PTP_like Prote 35.0 6.1E+02 0.013 27.4 19.6 108 93-211 45-159 (361)
357 cd02680 MIT_calpain7_2 MIT: do 34.8 72 0.0016 26.9 4.5 35 238-272 5-39 (75)
358 PF14357 DUF4404: Domain of un 34.6 67 0.0015 27.6 4.4 39 90-128 1-40 (85)
359 KOG2114 Vacuolar assembly/sort 34.4 3.9E+02 0.0085 32.3 11.6 159 261-431 349-550 (933)
360 cd02683 MIT_1 MIT: domain cont 32.9 97 0.0021 26.0 5.0 33 360-392 5-37 (77)
361 cd02680 MIT_calpain7_2 MIT: do 32.4 86 0.0019 26.5 4.6 34 360-393 5-38 (75)
362 cd09034 BRO1_Alix_like Protein 32.0 6.2E+02 0.013 26.5 19.3 76 189-273 135-227 (345)
363 cd09245 BRO1_UmRIM23-like Prot 32.0 5.5E+02 0.012 28.4 12.0 118 359-477 115-331 (413)
364 PF10373 EST1_DNA_bind: Est1 D 31.9 1.5E+02 0.0033 29.4 7.2 62 258-330 1-62 (278)
365 smart00745 MIT Microtubule Int 31.8 1.2E+02 0.0025 24.8 5.3 34 359-392 6-39 (77)
366 KOG0276 Vesicle coat complex C 31.7 3.4E+02 0.0075 31.8 10.3 79 283-387 668-747 (794)
367 PF07720 TPR_3: Tetratricopept 31.4 1.2E+02 0.0027 21.8 4.6 28 363-390 3-32 (36)
368 cd02684 MIT_2 MIT: domain cont 31.4 1.1E+02 0.0023 25.6 5.0 33 360-392 5-37 (75)
369 PF11853 DUF3373: Protein of u 31.0 34 0.00073 38.6 2.4 27 77-103 22-48 (489)
370 KOG1308 Hsp70-interacting prot 31.0 34 0.00074 37.0 2.3 92 182-311 121-212 (377)
371 KOG2908 26S proteasome regulat 30.7 5.2E+02 0.011 28.2 11.0 100 372-472 86-187 (380)
372 cd02677 MIT_SNX15 MIT: domain 30.3 1E+02 0.0023 25.8 4.7 34 359-392 4-37 (75)
373 PRK10941 hypothetical protein; 30.3 2.8E+02 0.0061 28.8 8.9 73 394-472 173-245 (269)
374 PF03097 BRO1: BRO1-like domai 30.2 6.9E+02 0.015 26.5 16.3 122 89-226 35-164 (377)
375 KOG3024 Uncharacterized conser 29.1 7.3E+02 0.016 26.5 12.4 116 190-319 41-161 (312)
376 PF00244 14-3-3: 14-3-3 protei 29.1 4.7E+02 0.01 26.5 10.1 176 89-310 18-198 (236)
377 PHA02537 M terminase endonucle 28.9 6.4E+02 0.014 25.8 11.0 104 292-401 94-217 (230)
378 KOG0376 Serine-threonine phosp 28.8 49 0.0011 37.0 3.2 91 185-313 14-104 (476)
379 TIGR02710 CRISPR-associated pr 28.5 8.3E+02 0.018 26.9 15.4 65 241-306 132-196 (380)
380 cd02678 MIT_VPS4 MIT: domain c 28.3 1.4E+02 0.003 24.7 5.1 33 360-392 5-37 (75)
381 PF04781 DUF627: Protein of un 28.2 4.6E+02 0.01 23.9 10.7 96 198-310 12-107 (111)
382 cd02681 MIT_calpain7_1 MIT: do 27.9 1.4E+02 0.003 25.2 5.1 33 360-392 5-37 (76)
383 cd09243 BRO1_Brox_like Protein 27.8 8E+02 0.017 26.5 12.8 35 401-435 247-281 (353)
384 PF12739 TRAPPC-Trs85: ER-Golg 27.7 8.3E+02 0.018 26.7 17.9 176 282-473 209-401 (414)
385 cd02682 MIT_AAA_Arch MIT: doma 27.6 1.5E+02 0.0033 25.1 5.2 36 175-210 6-41 (75)
386 PF12854 PPR_1: PPR repeat 27.3 99 0.0021 21.5 3.5 24 242-265 10-33 (34)
387 cd09239 BRO1_HD-PTP_like Prote 27.0 6.9E+02 0.015 27.0 11.5 116 357-473 110-283 (361)
388 KOG1538 Uncharacterized conser 26.8 1.2E+03 0.025 28.0 14.3 60 410-469 781-844 (1081)
389 PF10153 DUF2361: Uncharacteri 26.8 1.2E+02 0.0025 27.8 4.8 38 91-128 2-39 (114)
390 PRK07066 3-hydroxybutyryl-CoA 26.7 93 0.002 33.1 4.7 64 15-80 159-222 (321)
391 KOG2561 Adaptor protein NUB1, 25.8 2.7E+02 0.0059 31.4 8.0 48 166-217 258-305 (568)
392 PF12854 PPR_1: PPR repeat 25.7 1.3E+02 0.0029 20.9 3.9 26 361-386 7-32 (34)
393 cd02684 MIT_2 MIT: domain cont 24.9 1.6E+02 0.0034 24.6 4.9 34 238-271 5-38 (75)
394 PF14561 TPR_20: Tetratricopep 24.9 3E+02 0.0065 23.6 6.8 32 361-392 22-53 (90)
395 KOG2053 Mitochondrial inherita 24.6 7.4E+02 0.016 30.3 11.7 109 318-446 43-151 (932)
396 KOG0985 Vesicle coat protein c 24.3 1.5E+03 0.033 28.6 18.5 58 243-313 1108-1165(1666)
397 KOG4563 Cell cycle-regulated h 24.3 2.3E+02 0.005 31.1 7.1 61 360-420 40-101 (400)
398 PF03097 BRO1: BRO1-like domai 24.3 8.7E+02 0.019 25.7 13.9 34 238-271 106-148 (377)
399 cd02679 MIT_spastin MIT: domai 23.9 1.5E+02 0.0033 25.2 4.7 36 358-393 5-40 (79)
400 KOG0971 Microtubule-associated 23.5 1.5E+03 0.032 28.1 17.5 98 30-130 479-590 (1243)
401 PF13812 PPR_3: Pentatricopept 23.5 1.4E+02 0.003 19.6 3.6 26 242-267 4-29 (34)
402 cd02678 MIT_VPS4 MIT: domain c 23.4 1.8E+02 0.0039 24.0 4.9 33 239-271 6-38 (75)
403 smart00745 MIT Microtubule Int 23.1 2.1E+02 0.0045 23.3 5.3 33 239-271 8-40 (77)
404 cd02656 MIT MIT: domain contai 22.9 2E+02 0.0044 23.4 5.2 33 360-392 5-37 (75)
405 PF09670 Cas_Cas02710: CRISPR- 22.9 5.2E+02 0.011 28.1 9.7 85 22-111 148-232 (379)
406 KOG3024 Uncharacterized conser 22.7 9E+02 0.019 25.9 10.8 108 361-469 26-154 (312)
407 TIGR00756 PPR pentatricopeptid 22.7 1.6E+02 0.0034 19.0 3.8 25 243-267 4-28 (35)
408 CHL00132 psaF photosystem I su 22.5 2.1E+02 0.0046 28.2 5.8 59 86-144 37-96 (185)
409 COG5091 SGT1 Suppressor of G2 22.3 2.2E+02 0.0047 30.2 6.2 84 374-458 52-135 (368)
410 PLN00019 photosystem I reactio 22.3 1.7E+02 0.0037 29.6 5.3 59 86-144 77-136 (223)
411 PF04212 MIT: MIT (microtubule 22.2 2.4E+02 0.0052 22.5 5.4 36 175-210 5-40 (69)
412 PF11846 DUF3366: Domain of un 21.8 7.1E+02 0.015 23.8 9.6 57 250-312 119-175 (193)
413 PF10373 EST1_DNA_bind: Est1 D 21.4 1.8E+02 0.0039 28.9 5.5 62 380-454 1-62 (278)
414 PRK13184 pknD serine/threonine 21.3 2.2E+02 0.0049 34.8 7.0 99 368-470 482-580 (932)
415 cd02656 MIT MIT: domain contai 20.5 2.2E+02 0.0049 23.1 5.0 30 242-271 9-38 (75)
416 cd09243 BRO1_Brox_like Protein 20.3 1.1E+03 0.024 25.5 14.9 18 191-208 137-154 (353)
No 1
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.9e-75 Score=610.61 Aligned_cols=455 Identities=38% Similarity=0.603 Sum_probs=419.9
Q ss_pred CchhhhhHHhhhhccCCchHHHHHHHHhhHHhhhcCcccccccchHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHH
Q 008796 1 MFFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKA 80 (553)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ld~~~~~ 80 (553)
|||..|++|+|+|+| |.+.|++.+++|+++|+.+.+|+.+ ||.||+||
T Consensus 167 ~~ftls~~~ll~me~-d~~dV~~ll~~~~qi~~n~~sdk~~--------~E~LkvFy----------------------- 214 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMER-DDYDVEKLLQRCGQIWQNISSDKTQ--------KEMLKVFY----------------------- 214 (629)
T ss_pred HHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhccCCChHH--------HHHHHHHH-----------------------
Confidence 689999999999999 8899999999999999999999987 99999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhcccCCCccccccccccccccccccccccccCC
Q 008796 81 DKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAP 160 (553)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (553)
|+.+|+...++.|.|+.....+ |||+.+.+++.+| ++|++|+...|
T Consensus 215 -----------------l~lql~yy~~~gq~rt~k~~lk-QLQ~siqtist~~----------------~~h~e~ilgsp 260 (629)
T KOG2300|consen 215 -----------------LVLQLSYYLLPGQVRTVKPALK-QLQDSIQTISTSS----------------RGHDEKILGSP 260 (629)
T ss_pred -----------------HHHHHHHHhcccchhhhHHHHH-HHHHHHhccCCCC----------------CCccccccCCC
Confidence 8889999999999999999988 9999999966655 57999999999
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHH
Q 008796 161 SPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQ 240 (553)
Q Consensus 161 ~~~~~~WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~ 240 (553)
+|+.|+|||||++|||||++||+++|+.|+|++|.||.++++.. .+|++..++ +.+|++|++++
T Consensus 261 s~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q----~eklkq~d~------------~srilsm~km~ 324 (629)
T KOG2300|consen 261 SPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQ----TEKLKQADL------------MSRILSMFKMI 324 (629)
T ss_pred ChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHH----Hhhcccccc------------hhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 788776665 56899999999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCc--hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT--ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~d--l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
+||++++|++.+|++.+|++.+.++++||.++|. +++..++++|+++|+|+++.|+|++|+.||..|.+.+.....+|
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh
Q 008796 319 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 398 (553)
Q Consensus 319 ~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr 398 (553)
+|..|+|++|++.|+.+.+.++|+.+.+......+ +.+.+|.++++.|+..+.+|+++||+++++++|++++. .+.-
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~s--sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana-ed~~ 481 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLS--SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA-EDLN 481 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcch--HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch-hhHH
Confidence 99999999999999999999999999998543333 33459999999999999999999999999999999974 5666
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHh
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD--RGNEMENDEYRRKKLDELQ 476 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd--~~~A~e~~e~a~~~~d~L~ 476 (553)
+++|+.|..||.+++..||+.++++++++|+++|+|++|.+.|.|++..+.++|.++|+ ...+.+.++.+...++.+.
T Consensus 482 rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~ql~Sr~ll 561 (629)
T KOG2300|consen 482 RLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKHQLQSRLLL 561 (629)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 6777888888777777777
Q ss_pred hHH---HHhhcchhhHHHHhhhcchhhccchhhHHHhhhcccccccccCCcccCCCCCCCCcccccccccCC-CCcccc
Q 008796 477 KRL---ADAYSSIHHIELISKVKLEVQQFHELDIKRAMANQSMSVNLDIPESIGLSTPLPVQSSSRLIDLDG-GRRGKR 551 (553)
Q Consensus 477 ~~~---~~A~~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 551 (553)
.+. -.+..+|+|+ |+.|.... ++ ...+|+|+.|||||| +||.+|.|+|||+|+|.+|+ +|||||
T Consensus 562 a~~~i~~~~~~~pa~~-ll~wfdgd------Pp---v~s~p~~~~~l~~pe-t~l~~~~p~~~ss~~~~~~~g~~~~~~ 629 (629)
T KOG2300|consen 562 ADGSIHHIELVAPAHI-LLYWFDGD------PP---VASAPSMQGNLDIPE-TSLEGPSPAPSSSRLVGLDTGKRWGKR 629 (629)
T ss_pred hccCcchHhhcccHHh-hhhhccCC------Cc---cccCCccCCccCCCc-ccccCCCCCccccccccCcccccccCC
Confidence 777 7777888888 68885543 22 446899999999999 99999999999999999999 788886
No 2
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=99.95 E-value=2.2e-24 Score=241.69 Aligned_cols=409 Identities=19% Similarity=0.236 Sum_probs=313.2
Q ss_pred chhhhhHHhhhhccCCchHHHHHHHHhhHHhhhcCcccccccchHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHH
Q 008796 2 FFATAILHVHLMQWDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKAD 81 (553)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ld~~~~~~ 81 (553)
+|..+.-.+|++....+. +...+++|...+..+.-+...+.+.|..|..++++++.++.+|+|++.+.+..|..-+.+.
T Consensus 180 ~~~l~~~~l~l~~~~~~d-~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDD-VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHHHHHHHHHhcCCCchh-HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 466667788888764444 5567888988888774444448899999999999999999999999876655444433333
Q ss_pred HHHhHHHHHHHHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhcccCCCcccccccccccccc--ccccccccccC
Q 008796 82 KQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNA--RQAWGDKLVLA 159 (553)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 159 (553)
.+. . +.+. .. ++..|... ..+.+ ..+
T Consensus 259 ~~~-----------------~---~w~~------------------------~~-----~d~~i~l~~~~~~~~---~~~ 286 (608)
T PF10345_consen 259 KKS-----------------P---SWPS------------------------WD-----EDGSIPLNIGEGSSN---SGG 286 (608)
T ss_pred hcC-----------------c---cCCC------------------------cC-----CCeeEEeeccccccc---CCC
Confidence 111 0 0000 00 00000000 00000 112
Q ss_pred CCCCCccccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHH
Q 008796 160 PSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLM 239 (553)
Q Consensus 160 ~~~~~~~WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a 239 (553)
. +..|.|||++++++|+|++++++++.+|+.+++.||.++|++.+++.. . ..+......+. ....-...+..|+.
T Consensus 287 ~-~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~--~-~~~~~~~~sl~-~~~~~~~~~~~l~~ 361 (608)
T PF10345_consen 287 T-PLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK--I-KSPSAPSESLS-EASERIQWLRYLQC 361 (608)
T ss_pred c-eeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh--c-cCCCCCCcCHH-HHHHhHHHHHHHHH
Confidence 2 678999999999999999999999999999999999999999966544 1 11221111111 11222455778899
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCc-hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHH
Q 008796 240 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT-ILQACESMIEMLRGQYAHSVGCYSEAAFHYV--------EAAKI 310 (553)
Q Consensus 240 ~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~d-l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~--------~AL~l 310 (553)
.+++.++.+.+.+|++..|.+.++++...+.+.|+ ......+.++++.|.+++..|+.+.|+.+|. .+.+.
T Consensus 362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~ 441 (608)
T PF10345_consen 362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRK 441 (608)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccC
Confidence 99999999999999999999999999999999887 5667789999999999999999999999998 44445
Q ss_pred ccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 311 TESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK 386 (553)
Q Consensus 311 ~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~e 386 (553)
...+.....+..|+.+++...+.... +...++.++|.-..+.+.. ...+.++...+.-....-.+++++.++.+
T Consensus 442 ~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ne~k~~l~~ 519 (608)
T PF10345_consen 442 SKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSY--NRTAYCLVLATYNTFEPFSSNEAKRHLQE 519 (608)
T ss_pred CcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHH--HHHHHHHHHHHHhhCCccccHHHHHHHHH
Confidence 55577889999999999998887555 7888888888633332222 22567777777777777888899999999
Q ss_pred HHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHH---HHHHHHHHHHHcCCchHHHH
Q 008796 387 GLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIW---ALSVLTALYQQLGDRGNEME 463 (553)
Q Consensus 387 AL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~---aL~~Lg~ly~alGd~~~A~e 463 (553)
+|+.+.+..|+.+..+.+|+.||..+. .|+.++...+..+|+.+|++..|...+.| +-..+.+.+...|+.++|.+
T Consensus 520 ~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~ 598 (608)
T PF10345_consen 520 ALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE 598 (608)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 999993379999999999999999999 99999999999999999999999999999 77889999999999999999
Q ss_pred HHHHHHHH
Q 008796 464 NDEYRRKK 471 (553)
Q Consensus 464 ~~e~a~~~ 471 (553)
..+.+.+.
T Consensus 599 ~~~~~~~~ 606 (608)
T PF10345_consen 599 ARQQLDRV 606 (608)
T ss_pred HHHHHHHh
Confidence 88777654
No 3
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.85 E-value=1.7e-20 Score=196.00 Aligned_cols=271 Identities=17% Similarity=0.134 Sum_probs=231.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
+|---+-.+..-++|.+|.+||.--|.. .+-+|+.-| |+. ---|||-..-+.|+|+
T Consensus 57 IYsQLGNAyfyL~DY~kAl~yH~hDltl----ar~lgdklG--EAK------------------ssgNLGNtlKv~G~fd 112 (639)
T KOG1130|consen 57 IYSQLGNAYFYLKDYEKALKYHTHDLTL----ARLLGDKLG--EAK------------------SSGNLGNTLKVKGAFD 112 (639)
T ss_pred HHHHhcchhhhHhhHHHHHhhhhhhHHH----HHHhcchhc--ccc------------------ccccccchhhhhcccc
Confidence 3434444556678999999999999999 566666555 222 1124455558899999
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHc---cc
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC--------------------YSEAAFHYVEAAKIT---ES 313 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~--------------------yeeAl~~f~~AL~l~---~d 313 (553)
+|+-+-.+=+.+.++.+|. ..++++++++|.++++.|+ ++.|..+|..-|++. +|
T Consensus 113 eA~~cc~rhLd~areLgDr--v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD 190 (639)
T KOG1130|consen 113 EALTCCFRHLDFARELGDR--VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD 190 (639)
T ss_pred hHHHHHHHHhHHHHHHhHH--HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999994 6689999999999999873 556777777777755 44
Q ss_pred hhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 314 KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 314 ~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
+..+..|..|||.+|++.|++++ -..=|.|.++.||+. . +-.++-++|.+|...|+++.|.++|..+|.
T Consensus 191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA----a---eRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA----A---ERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH----H---HHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 66678899999999999999998 566788888887653 2 557889999999999999999999999999
Q ss_pred HHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 390 IAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 390 Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
++. ++|++-.+|++-+.||.+|.-..++..|++++.+=|.+|++++|+.+|..+...||..|.+.|++.+|+-+.+.++
T Consensus 264 LAi-elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAI-ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHH-HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 995 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHH
Q 008796 470 KKLDELQKRLAD 481 (553)
Q Consensus 470 ~~~d~L~~~~~~ 481 (553)
..+.+++....+
T Consensus 343 ~~s~ev~D~sge 354 (639)
T KOG1130|consen 343 RSSLEVNDTSGE 354 (639)
T ss_pred HHHHHhCCcchh
Confidence 999988876543
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.80 E-value=5.7e-17 Score=177.59 Aligned_cols=272 Identities=16% Similarity=0.098 Sum_probs=227.8
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008796 172 AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 251 (553)
Q Consensus 172 ~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~ 251 (553)
.+.++.+ .+.-+..+|.|++|+.-++.|++. +.+.. + +.|. .-..++.++|.+++.
T Consensus 198 ~~~~~~~--La~~y~~~g~~e~A~~l~k~Al~~----l~k~~---G-----~~hl----------~va~~l~~~a~~y~~ 253 (508)
T KOG1840|consen 198 RLRTLRN--LAEMYAVQGRLEKAEPLCKQALRI----LEKTS---G-----LKHL----------VVASMLNILALVYRS 253 (508)
T ss_pred HHHHHHH--HHHHHHHhccHHHHHHHHHHHHHH----HHHcc---C-----ccCH----------HHHHHHHHHHHHHHH
Confidence 3455555 677778899999999999999999 44321 1 1112 134455689999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHC-CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----hhhHHHHHHHHH
Q 008796 252 RSGFVEAQEALVQMKNWFIRF-PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-----KSMQAMCHAYAA 325 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~-~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-----~~g~A~aL~NLA 325 (553)
+++|.+|+..|+.|+.+.++. |. .....+.++++|+..+...|+|++|..++..|+++... ..-.+..+.|+|
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~-~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGE-DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 999999999999999999984 33 24557899999999999999999999999999998866 334778899999
Q ss_pred HHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC--hH
Q 008796 326 VSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN--LQ 399 (553)
Q Consensus 326 ~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd--r~ 399 (553)
.++...+++++ +.+++.++... ++... ...+....++|.+++..|+|+||.+.+.+|+.+.++ .+. ..
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~---~g~~~--~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~-~~~~~~~ 406 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDA---PGEDN--VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE-LLGKKDY 406 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhh---ccccc--hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh-cccCcCh
Confidence 99999999998 88999998833 22112 137899999999999999999999999999999974 444 79
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 400 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD-IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 400 leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD-~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
+++..++.||..+...+++.+|..++..|..|.+..|. .++-..++.+|+.+|..+|+++.|.+..+...+..+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999966654 6688889999999999999999999988888776654
No 5
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.76 E-value=7.1e-18 Score=176.65 Aligned_cols=232 Identities=14% Similarity=0.085 Sum_probs=209.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cchhhHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESKSMQAM 319 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~---~d~~g~A~ 319 (553)
..||-++.+.++|.+|+++...-+.+.+..+| ..++|-.--+||-...-+|.|++|+-+..+-|.++ +|+.+++.
T Consensus 59 sQLGNAyfyL~DY~kAl~yH~hDltlar~lgd--klGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~R 136 (639)
T KOG1130|consen 59 SQLGNAYFYLKDYEKALKYHTHDLTLARLLGD--KLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESR 136 (639)
T ss_pred HHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc--hhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhH
Confidence 78999999999999999999999999999999 46789999999999999999999999999888866 56788999
Q ss_pred HHHHHHHHHHHhCChH-------------H-----------HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcC
Q 008796 320 CHAYAAVSYFCIGDAE-------------S-----------SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ 375 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e-------------~-----------~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qG 375 (553)
++.|||.||...|+.- + |..-|++.+.+||+ -....++.++|..|+.+|
T Consensus 137 AlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr-------~aqGRa~GnLGNTyYlLG 209 (639)
T KOG1130|consen 137 ALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDR-------LAQGRAYGNLGNTYYLLG 209 (639)
T ss_pred HHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HhhcchhcccCceeeeec
Confidence 9999999999988521 1 33445556666544 225678899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc
Q 008796 376 DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL 455 (553)
Q Consensus 376 r~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~al 455 (553)
+|+.|..+-..-|.|++ +.||+--+-.+.-+||..|.-.|++..|.++|+.++.+|.++|++..++.+-..||..|.-.
T Consensus 210 df~~ai~~H~~RL~ia~-efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll 288 (639)
T KOG1130|consen 210 DFDQAIHFHKLRLEIAQ-EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL 288 (639)
T ss_pred cHHHHHHHHHHHHHHHH-HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH
Confidence 99999999999999995 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhhHHHHhhc
Q 008796 456 GDRGNEMENDEYRRKKLDELQKRLADAYS 484 (553)
Q Consensus 456 Gd~~~A~e~~e~a~~~~d~L~~~~~~A~~ 484 (553)
.++++|.++|.++++++++|..+..+..+
T Consensus 289 ~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 289 KEVQKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999887653
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=1.2e-17 Score=181.19 Aligned_cols=251 Identities=16% Similarity=0.119 Sum_probs=206.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHH-----------HHHHH
Q 008796 171 SAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVY-----------LMLLM 239 (553)
Q Consensus 171 ~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy-----------~~L~a 239 (553)
.+-++.+|---+.+|..+|..-.++.++++|+.. +-... +.+ +++|.|| +.+++
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl------dP~f~--------dAY-iNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL------DPNFL--------DAY-INLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC------CCcch--------HHH-hhHHHHHHHHhcchHHHHHHHHH
Confidence 3456667777778888889988888888888876 00111 112 3333332 12333
Q ss_pred --------HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 008796 240 --------QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 311 (553)
Q Consensus 240 --------~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~ 311 (553)
...-||++++..+|..+-|+..|++|+++--.+|+ +++++|......|+..||+++|.+||++.
T Consensus 279 l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~--------Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 279 LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD--------AYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH--------HHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 34468899999999999999999999998665666 78999999999999999999999999874
Q ss_pred cchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008796 312 ESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 387 (553)
Q Consensus 312 ~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eA 387 (553)
- ..|.+++|||.+|.++|..+. |..||+.+-+ -|.+++|+|.++..+|++++|..+|.+|
T Consensus 351 p---~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-------------~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 351 P---NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-------------FAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred C---ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-------------hhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 3 467899999999999999887 7788776443 4789999999999999999999999999
Q ss_pred HHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 008796 388 LQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 467 (553)
Q Consensus 388 L~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~ 467 (553)
|.|. ..-|.+++++|.++-.+|+...|..++.+|..+ .+.-+.+..+|+-+|+..|+..+|...|+.
T Consensus 415 lrI~-------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 415 LRIK-------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HhcC-------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 9994 677899999999999999999999999999766 678889999999999999999999999999
Q ss_pred HHHHHH
Q 008796 468 RRKKLD 473 (553)
Q Consensus 468 a~~~~d 473 (553)
++++.-
T Consensus 482 aLklkP 487 (966)
T KOG4626|consen 482 ALKLKP 487 (966)
T ss_pred HHccCC
Confidence 987643
No 7
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=1.2e-15 Score=167.38 Aligned_cols=236 Identities=17% Similarity=0.155 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH-CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIR-FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--- 313 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~-~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d--- 313 (553)
...++.+|+..+..+|+|+.|+..+++|+++... .|. --...+.+.+.+|.++.++++|.+|...|++|+.+..+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGL-KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCc-cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 3445566999999999999999999999999655 442 23446778889999999999999999999999998764
Q ss_pred --hhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008796 314 --KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 387 (553)
Q Consensus 314 --~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eA 387 (553)
....|.+++|||..|...|++++ |.+|++|...+... ..+ ..+..+.++|.++...+++++|..+|+++
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~---~~~--~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA---SHP--EVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc---ChH--HHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 44688999999999999999887 99999999985321 122 26899999999999999999999999999
Q ss_pred HHHHHHhccChH-hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHcCCchHHHHH
Q 008796 388 LQIAHNHMGNLQ-LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD--IPTQIWALSVLTALYQQLGDRGNEMEN 464 (553)
Q Consensus 388 L~Lar~elGdr~-leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD--~~~qa~aL~~Lg~ly~alGd~~~A~e~ 464 (553)
+++...-.|... .++....+||.+++.+|++.+|++++++|+++.++.++ +......++.||..|...+++.+|...
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 999965567655 88999999999999999999999999999999999988 788899999999999999999999999
Q ss_pred HHHHHHHHHHHhhHH
Q 008796 465 DEYRRKKLDELQKRL 479 (553)
Q Consensus 465 ~e~a~~~~d~L~~~~ 479 (553)
|..+..+....+..+
T Consensus 432 ~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 432 FEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999997666554
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.63 E-value=8.5e-14 Score=156.04 Aligned_cols=243 Identities=16% Similarity=0.163 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 174 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 174 ~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
.+.++...+.+....|++++|+.++++++.. .+. -.....++|.++...|
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----------~P~--------------------~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL----------DPR--------------------VTQSYIKRASMNLELG 379 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCC--------------------cHHHHHHHHHHHHHCC
Confidence 4566777888888899999999999998876 112 1122457788889999
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCC
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 333 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd 333 (553)
++++|+..+.+++++ .|+ -+.++..+|.++..+|++++|...|.+|+++..+ ...++.++|.++...|+
T Consensus 380 ~~~eA~~~~~~al~~---~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~---~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 380 DPDKAEEDFDKALKL---NSE-----DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD---FIFSHIQLGVTQYKEGS 448 (615)
T ss_pred CHHHHHHHHHHHHHh---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---CHHHHHHHHHHHHHCCC
Confidence 999999999999887 444 2458889999999999999999999999987543 34567899999999999
Q ss_pred hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChH-hHHHHHHHH
Q 008796 334 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ-LVSQYLTIL 408 (553)
Q Consensus 334 ~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~-leA~aL~~L 408 (553)
+++ +.+++.+. |. -+.+++.+|.++..+|++++|+..|++|+++.. +..... .....++..
T Consensus 449 ~~eA~~~~~~al~~~-P~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p-~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 449 IASSMATFRRCKKNF-PE------------APDVYNYYGELLLDQNKFDEAIEKFDTAIELEK-ETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHHHHHhC-CC------------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-ccccccccHHHHHHHH
Confidence 887 55555432 11 356889999999999999999999999999963 322222 222223333
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Q 008796 409 GNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 409 G~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~ 477 (553)
+..+...|++.+|..++++|+.+- +.-..++..||.++...|++++|...|+.+.++..+...
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIID------PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 444455799999999999999862 122347789999999999999999999999988875443
No 9
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.62 E-value=4e-13 Score=155.71 Aligned_cols=261 Identities=11% Similarity=0.015 Sum_probs=211.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Q 008796 181 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 260 (553)
Q Consensus 181 tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~ 260 (553)
........|+++++..+++.+++. .. .. + . . .....+..+|.++...|++++|..
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~----~~-----~~----~---~-~--------~~~~a~~~lg~~~~~~G~~~~A~~ 512 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAE----LP-----LT----W---Y-Y--------SRIVATSVLGEVHHCKGELARALA 512 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc----CC-----Cc----c---H-H--------HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445567799999999999998874 11 11 0 0 0 134456789999999999999999
Q ss_pred HHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh-----hHHHHHHHHHHHHHHhCChH
Q 008796 261 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-----MQAMCHAYAAVSYFCIGDAE 335 (553)
Q Consensus 261 ~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~-----g~A~aL~NLA~vyl~~Gd~e 335 (553)
.+.++++++++.++. .....++..+|.++...|++++|..++.+|+.+.+... ..+.+..++|.++...|+++
T Consensus 513 ~~~~al~~~~~~g~~--~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 513 MMQQTEQMARQHDVY--HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHhhhcch--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998773 44567889999999999999999999999999876533 24566778999999999988
Q ss_pred H----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChH------------
Q 008796 336 S----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ------------ 399 (553)
Q Consensus 336 ~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~------------ 399 (553)
+ +.+++++.+..+ ....+.++..+|.++...|++++|.+.+.+++.+.. ..+...
T Consensus 591 ~A~~~~~~al~~~~~~~--------~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQ--------PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG-NGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHHHHHhHHhhhccC--------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccHhHhhHHHHHHHH
Confidence 7 677777766542 122567888999999999999999999999998863 232100
Q ss_pred ---------------------------hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 008796 400 ---------------------------LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALY 452 (553)
Q Consensus 400 ---------------------------leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly 452 (553)
.....+..+|.++...|++.+|...++++++.++..|.....+.++..+|.++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 01111457899999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHHHHHHHhh
Q 008796 453 QQLGDRGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 453 ~alGd~~~A~e~~e~a~~~~d~L~~ 477 (553)
...|++++|.+.++.+...+...+-
T Consensus 742 ~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHhCccch
Confidence 9999999999999999998877655
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.59 E-value=7.4e-15 Score=159.93 Aligned_cols=209 Identities=16% Similarity=0.103 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
+....|||++...+|+.-+|+.+|++|+.+--.++| ++.+||-++..++.|++|...|.+|+.+ +...|
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~d--------AYiNLGnV~ke~~~~d~Avs~Y~rAl~l---rpn~A 286 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLD--------AYINLGNVYKEARIFDRAVSCYLRALNL---RPNHA 286 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchH--------HHhhHHHHHHHHhcchHHHHHHHHHHhc---CCcch
Confidence 345688999999999999999999999998544444 7899999999999999999999988865 45678
Q ss_pred HHHHHHHHHHHHhCChHH----HHHHHHhh--------------cccccccccccch--------hHHHHHHHHHHHHHH
Q 008796 319 MCHAYAAVSYFCIGDAES----SSQAIDLI--------------GPVYQMKDTINGV--------REEASLHFAYGLLLM 372 (553)
Q Consensus 319 ~aL~NLA~vyl~~Gd~e~----~~qAL~L~--------------r~lgd~~g~~~~l--------r~eA~aL~~LG~~~~ 372 (553)
.+..|+|-||.++|..|- |++|+++- .+.|+-. ..... ..-|.+++|+|.++.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~-ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT-EAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH-HHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 889999999999998774 88888761 1221110 00000 013788899999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 008796 373 RQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALY 452 (553)
Q Consensus 373 ~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly 452 (553)
.+|.+++|.+.|.+||+.. ..-|.+.++||.++..+|+.++|..+|++|+.+. +.-+.++.++|.+|
T Consensus 366 E~~~~e~A~~ly~~al~v~-------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVF-------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------PTFADALSNMGNTY 432 (966)
T ss_pred HhccchHHHHHHHHHHhhC-------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------chHHHHHHhcchHH
Confidence 9999999999999999885 4557789999999999999999999999999884 66788999999999
Q ss_pred HHcCCchHHHHHHHHHHHHH
Q 008796 453 QQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 453 ~alGd~~~A~e~~e~a~~~~ 472 (553)
...|+...|...|+.+..+-
T Consensus 433 ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999887654
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.54 E-value=7.1e-12 Score=130.77 Aligned_cols=239 Identities=15% Similarity=0.038 Sum_probs=150.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q 008796 179 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 258 (553)
Q Consensus 179 l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeA 258 (553)
+..+..+...|++++|..+++++++. .+. -..++..+|.++..+|++++|
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~----------~p~--------------------~~~~~~~la~~~~~~g~~~~A 88 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKV----------DPE--------------------TVELHLALGNLFRRRGEVDRA 88 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc----------Ccc--------------------cHHHHHHHHHHHHHcCcHHHH
Confidence 34455667889999999999998876 111 112245567777888888888
Q ss_pred HHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHH
Q 008796 259 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSS 338 (553)
Q Consensus 259 l~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~ 338 (553)
++.+++++. .|+........++..+|..+...|++++|...|.++++.. .....++.+++.+|...|++++..
T Consensus 89 ~~~~~~~l~----~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 89 IRIHQNLLS----RPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG---DFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred HHHHHHHhc----CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC---cchHHHHHHHHHHHHHhchHHHHH
Confidence 888877765 2332112234567778888888888888888888776542 123456677788888878776521
Q ss_pred HHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCCh
Q 008796 339 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 418 (553)
Q Consensus 339 qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~ 418 (553)
..+..+-..+.. ......+..+.++|.++..+|++++|...|++++++.. . ...+...||.++...|++
T Consensus 162 ~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~------~~~~~~~la~~~~~~g~~ 230 (389)
T PRK11788 162 DVAERLEKLGGD----SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-Q------CVRASILLGDLALAQGDY 230 (389)
T ss_pred HHHHHHHHhcCC----cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-C------CHHHHHHHHHHHHHCCCH
Confidence 111111111000 01112345566777778888888888888888777631 1 234566778888888888
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 419 VQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 419 ~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
.+|.+.+++++.. ++..-..+...|+.+|...|++++|...++....
T Consensus 231 ~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 231 AAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888887777754 1222234456677777777777777777666544
No 12
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.50 E-value=2.4e-11 Score=140.93 Aligned_cols=267 Identities=16% Similarity=0.051 Sum_probs=200.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 008796 182 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 261 (553)
Q Consensus 182 v~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~ 261 (553)
.+.....|+++++...++.+.+. ....+.... . . +...+...++.++...|++++|...
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~----~~~~~~~~~--------~-~--------~~~~~~~~~a~~~~~~g~~~~A~~~ 474 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQE----LKDRNIELD--------G-T--------LQAEFNALRAQVAINDGDPEEAERL 474 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----ccccCcccc--------h-h--------HHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34445779999999999888766 322211101 0 0 0233334578888999999999999
Q ss_pred HHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHhCChHH--
Q 008796 262 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAES-- 336 (553)
Q Consensus 262 l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~A~aL~NLA~vyl~~Gd~e~-- 336 (553)
++++++.... ++ ....+.+.+.+|.++...|++++|...+.+|+...++ ....+.++.++|.++...|++++
T Consensus 475 ~~~al~~~~~-~~--~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~ 551 (903)
T PRK04841 475 AELALAELPL-TW--YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAY 551 (903)
T ss_pred HHHHHhcCCC-cc--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 9999986322 22 2335567889999999999999999999999987654 44577889999999999999887
Q ss_pred --HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHH
Q 008796 337 --SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 414 (553)
Q Consensus 337 --~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~la 414 (553)
+.+++++.+..+... . ...+.++..+|.++..+|++++|..++++++.+.. ..+. ...+.++..+|.++..
T Consensus 552 ~~~~~al~~~~~~~~~~---~--~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~-~~~~-~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 552 ETQEKAFQLIEEQHLEQ---L--PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS-NYQP-QQQLQCLAMLAKISLA 624 (903)
T ss_pred HHHHHHHHHHHHhcccc---c--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh-ccCc-hHHHHHHHHHHHHHHH
Confidence 788888877764221 1 11455677899999999999999999999999985 5554 5567888999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCChHH---------------------------------------HHHHHHHHHHHHHHc
Q 008796 415 LHDTVQAREILRSSLTLAKKLYDIPT---------------------------------------QIWALSVLTALYQQL 455 (553)
Q Consensus 415 lGd~~eA~~~l~~AL~LArklgD~~~---------------------------------------qa~aL~~Lg~ly~al 455 (553)
.|++.+|.+.+.+++.+....++... .......+++++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 99999999999999887665432110 001135788899999
Q ss_pred CCchHHHHHHHHHHHHHHHHhhHH
Q 008796 456 GDRGNEMENDEYRRKKLDELQKRL 479 (553)
Q Consensus 456 Gd~~~A~e~~e~a~~~~d~L~~~~ 479 (553)
|++++|...++.+....+..+...
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchH
Confidence 999999999999988766655443
No 13
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.49 E-value=2.8e-12 Score=133.48 Aligned_cols=195 Identities=12% Similarity=0.102 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccccccccc
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 353 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~---~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~ 353 (553)
.+++-.+|..+..++-|+.+++.|+.|++.+ +|+..+-.+.+.||..+-...|+++ ...|+++.+.++-..
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d-- 199 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD-- 199 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc--
Confidence 4677789999999999999999999999976 5566788889999999999999998 789999999874211
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 008796 354 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 433 (553)
Q Consensus 354 ~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LAr 433 (553)
...--++.+++.++.++..+|+...|+++..+|-+++= +.||+-..+.++..+|+||...||.+.|..-|++|+....
T Consensus 200 -~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal-~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 200 -WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL-QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred -hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH-HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 12222689999999999999999999999999999995 8999999999999999999999999999999999999999
Q ss_pred HhCChHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHHHHhhHH
Q 008796 434 KLYDIPTQIWALSVLTALYQQL-----GDRGNEMENDEYRRKKLDELQKRL 479 (553)
Q Consensus 434 klgD~~~qa~aL~~Lg~ly~al-----Gd~~~A~e~~e~a~~~~d~L~~~~ 479 (553)
.+||+.+|..++...++..... |..-+|.+.-++..+++.+++..+
T Consensus 278 ~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~ 328 (518)
T KOG1941|consen 278 SLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL 328 (518)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH
Confidence 9999999999999988855443 334558888888888887776643
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.48 E-value=3.1e-12 Score=143.47 Aligned_cols=228 Identities=14% Similarity=0.089 Sum_probs=176.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 008796 186 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 265 (553)
Q Consensus 186 ~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qA 265 (553)
...+.|++|.+++++++.. . + ..+. .+..+.++|.++..+|++++|+..+.++
T Consensus 305 ~~~~~y~~A~~~~~~al~~----~-~--~~~~--------------------~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 305 KADESYEEAARAFEKALDL----G-K--LGEK--------------------EAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhhhHHHHHHHHHHHHhc----C-C--CChh--------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888888888888776 1 1 1111 3455788999999999999999999999
Q ss_pred HHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHH
Q 008796 266 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAI 341 (553)
Q Consensus 266 L~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL 341 (553)
+++ .|+ .+..+..+|..+..+|++++|...|.+|++...+ ...++.++|.+|...|++++ +.+++
T Consensus 358 l~l---~P~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 358 IEL---DPR-----VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE---DPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHc---CCC-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 987 454 2447889999999999999999999999887433 35688999999999999887 66666
Q ss_pred HhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHH
Q 008796 342 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 421 (553)
Q Consensus 342 ~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA 421 (553)
++.-. -..+++.+|.++..+|++++|...+++++++.- ..+.+++.+|.++...|++.+|
T Consensus 427 ~l~P~-------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-------~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 427 DLDPD-------------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-------EAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HcCcc-------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHccCHHHH
Confidence 54211 245688999999999999999999999998741 2245788999999999999999
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHH-HHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 422 REILRSSLTLAKKLYDIPTQIWAL-SVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 422 ~~~l~~AL~LArklgD~~~qa~aL-~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+..+++|+.+..+..........+ ...+.++...|++++|.+.++.+..+
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999976644433222222 22333455579999999999887654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.47 E-value=5.9e-11 Score=123.89 Aligned_cols=236 Identities=16% Similarity=0.020 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
-++...+.++...|++++|..++++++.. +.... .. ....+..+|.++...|++
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~~~~~----------~~--------~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 70 ELHLALGNLFRRRGEVDRAIRIHQNLLSR--------PDLTR----------EQ--------RLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHhcC--------CCCCH----------HH--------HHHHHHHHHHHHHHCCCH
Confidence 35667778888999999999998876643 11111 00 334678899999999999
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh--hHHHHHHHHHHHHHHhCC
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAYAAVSYFCIGD 333 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~--g~A~aL~NLA~vyl~~Gd 333 (553)
++|++.+.++++. .|. ...++..++..+...|++++|...|..+++...... ..+..+.++|.++...|+
T Consensus 124 ~~A~~~~~~~l~~---~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 124 DRAEELFLQLVDE---GDF-----AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHHHHHHHHcC---Ccc-----hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 9999999999875 333 245778899999999999999999999887654322 345567889999999999
Q ss_pred hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHH
Q 008796 334 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 409 (553)
Q Consensus 334 ~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG 409 (553)
+++ +.+++.+. +. -..+++.+|.++...|++++|...++++++... .....++..|+
T Consensus 196 ~~~A~~~~~~al~~~-p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~~l~ 256 (389)
T PRK11788 196 LDAARALLKKALAAD-PQ------------CVRASILLGDLALAQGDYAAAIEALERVEEQDP------EYLSEVLPKLM 256 (389)
T ss_pred HHHHHHHHHHHHhHC-cC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh------hhHHHHHHHHH
Confidence 887 55555432 11 235778899999999999999999999987631 23346778999
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 410 NLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 410 ~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.++...|++++|...+++++... ++. .....++.++...|++++|...++.+.+.
T Consensus 257 ~~~~~~g~~~~A~~~l~~~~~~~---p~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRALEEY---PGA----DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCc----hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999988762 332 22378999999999999999999887765
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=1.7e-11 Score=115.08 Aligned_cols=197 Identities=17% Similarity=0.101 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
.+..+.++|.++...|++++|++.+.++++. .|+ .+.++..+|.++..+|++++|...|.++++...+ .
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~ 98 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH---DPD-----DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN---N 98 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Ccc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C
Confidence 3556678999999999999999999999875 344 2457888999999999999999999999987544 2
Q ss_pred HHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
..+..++|.+|...|++++ +.+++..... ......+.++|.++...|++++|...+.++++...
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 166 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY-----------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP- 166 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-----------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 3578899999999999887 5555542110 11456788899999999999999999999998742
Q ss_pred hccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 394 HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 394 elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
. + ..++..+|.++...|++.+|...+++++.+ .++ ....+..++.++...|+.++|....+...
T Consensus 167 ~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 167 Q--R----PESLLELAELYYLRGQYKDARAYLERYQQT---YNQ---TAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred C--C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 1 346789999999999999999999999987 222 23344578899999999999988766544
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.42 E-value=3.9e-11 Score=136.33 Aligned_cols=252 Identities=13% Similarity=0.025 Sum_probs=171.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH----------HHHHHcCCCCCcccccchhhHHHHHHHHHHH------HHHH
Q 008796 178 DLMVVILGRPKGLFKECMQRIQSGMQTIQ----------DALLKLGITDGVREVDLQHSAIWMAGVYLML------LMQF 241 (553)
Q Consensus 178 ~l~tv~~~~~~G~~dka~ky~ekAL~~~~----------~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L------~a~l 241 (553)
+...+..+...|++++|...++++++.-- ......|.... ++ .+|-.+ ....
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~e---------A~---~~~~~~~~~~P~~~~a 180 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQ---------AI---SLARTQAQEVPPRGDM 180 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHH---------HH---HHHHHHHHhCCCCHHH
Confidence 55566777888999999999999988610 01112222111 00 001000 0011
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
+.++ ......|++++|++.+.++++.. |.. .......+|..+...|++++|...|.++++...+ ...++
T Consensus 181 ~~~~-~~l~~~g~~~eA~~~~~~~l~~~---~~~----~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~---~~~~~ 249 (656)
T PRK15174 181 IATC-LSFLNKSRLPEDHDLARALLPFF---ALE----RQESAGLAVDTLCAVGKYQEAIQTGESALARGLD---GAALR 249 (656)
T ss_pred HHHH-HHHHHcCCHHHHHHHHHHHHhcC---CCc----chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHH
Confidence 1222 23566788888877777765542 210 0113356678888999999999999999876433 46788
Q ss_pred HHHHHHHHHhCChHH-HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh
Q 008796 322 AYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 400 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l 400 (553)
.++|.+|...|++++ ..+|++.++...... . +-+.++..+|.++..+|++++|...+++++++. -.
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~----P--~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~---- 316 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN----S--DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PD---- 316 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC----
Confidence 899999999999874 334444444332111 0 145789999999999999999999999999874 11
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 401 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 401 eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.+.+...||.++...|++++|.+.+++++... ++. ......+|.++...|++++|.+.|+.+.+.
T Consensus 317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~---~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 317 LPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVT---SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23567789999999999999999999888752 222 234555688999999999999999987666
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.35 E-value=1.1e-10 Score=140.08 Aligned_cols=235 Identities=13% Similarity=0.001 Sum_probs=170.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q 008796 178 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 257 (553)
Q Consensus 178 ~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ae 257 (553)
+...+..+...|++++|+++++++++. .++. ..++.+++.++..+|++++
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~---------~P~~---------------------~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLAL---------DPGS---------------------VWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCC---------------------HHHHHHHHHHHHHcCCHHH
Confidence 334455677899999999999999987 1111 1134678888999999999
Q ss_pred HHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------------------
Q 008796 258 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI--------------------------- 310 (553)
Q Consensus 258 Al~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l--------------------------- 310 (553)
|++.+++++++ .|+ -+.++..+|.+....+++++|+.++.+....
T Consensus 514 A~~~l~~al~~---~P~-----~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 514 ADALMRRLAQQ---KPN-----DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHHHHHHHHHc---CCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999998864 344 1335667778888888888888877643210
Q ss_pred ----------ccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCC
Q 008796 311 ----------TESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD 376 (553)
Q Consensus 311 ----------~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr 376 (553)
.+........+.++|.+|...|++++ +++++.+ .|. -..+++.+|.++...|+
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~------------~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPG------------NADARLGLIEVDIAQGD 652 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC------------CHHHHHHHHHHHHHCCC
Confidence 00011112345678888888888776 4444443 111 24678889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q 008796 377 FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 456 (553)
Q Consensus 377 ~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alG 456 (553)
+++|+..|+++++... ....++..+|.++...|++++|.+.+++++....+.......+.++..+++++...|
T Consensus 653 ~~eA~~~l~~ll~~~p-------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 653 LAAARAQLAKLPATAN-------DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred HHHHHHHHHHHhccCC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999997776531 123457788999999999999999999998877655544445667788899999999
Q ss_pred CchHHHHHHHHHHH
Q 008796 457 DRGNEMENDEYRRK 470 (553)
Q Consensus 457 d~~~A~e~~e~a~~ 470 (553)
++++|.+.|+.++.
T Consensus 726 ~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 726 QPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999975
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.35 E-value=2.3e-10 Score=130.16 Aligned_cols=225 Identities=13% Similarity=0.043 Sum_probs=150.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 008796 183 ILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEAL 262 (553)
Q Consensus 183 ~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l 262 (553)
+.....|++++|...++++++. .|. ....+..+|.++..+|++++|++.+
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~----------~P~--------------------~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAV----------NVC--------------------QPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHh----------CCC--------------------ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3335699999999999999887 122 1122355666667777777777777
Q ss_pred HHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH-------------------------
Q 008796 263 VQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ------------------------- 317 (553)
Q Consensus 263 ~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~------------------------- 317 (553)
.+++++ .|+. ..++..+|..+..+|++++|...+.+++....+....
T Consensus 134 ~~Al~l---~P~~-----~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 134 EQAWLA---FSGN-----SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHh---CCCc-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777765 3441 2345556666666666666666666554433221110
Q ss_pred ------HHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHH----HHHH
Q 008796 318 ------AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQE----ARNR 383 (553)
Q Consensus 318 ------A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~E----A~~~ 383 (553)
......++.++...|++++ +.+++.+. + + -..+++++|.++..+|++++ |...
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p---------~---~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L---------D---GAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C---------C---CHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 0111233445555555554 33333221 0 1 35678889999999999986 7888
Q ss_pred HHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHH
Q 008796 384 LAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 463 (553)
Q Consensus 384 L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e 463 (553)
|++++++. ...+.++..+|.++..+|++++|...+++++.+. ++. ..+...||.+|...|++++|.+
T Consensus 273 ~~~Al~l~-------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~~---~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 273 WRHALQFN-------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PDL---PYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred HHHHHhhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHCCCHHHHHH
Confidence 99888874 1235688899999999999999999999999863 222 2356779999999999999999
Q ss_pred HHHHHHHH
Q 008796 464 NDEYRRKK 471 (553)
Q Consensus 464 ~~e~a~~~ 471 (553)
.++.....
T Consensus 340 ~l~~al~~ 347 (656)
T PRK15174 340 EFVQLARE 347 (656)
T ss_pred HHHHHHHh
Confidence 99877654
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=3.4e-10 Score=106.16 Aligned_cols=198 Identities=13% Similarity=0.076 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 174 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 174 ~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
.+-++...+..+...|++++|.++++++++. .+. ....+..+|.++..+|
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----------~p~--------------------~~~~~~~la~~~~~~~ 79 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH----------DPD--------------------DYLAYLALALYYQQLG 79 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------Ccc--------------------cHHHHHHHHHHHHHcC
Confidence 3556666778888899999999999998765 112 1223456888889999
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCC
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 333 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd 333 (553)
++++|++.+.+++++. |+ ...+...+|.++...|++++|...|.++++... .........++|.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~---~~-----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 80 ELEKAEDSFRRALTLN---PN-----NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGD 150 (234)
T ss_pred CHHHHHHHHHHHHhhC---CC-----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCC
Confidence 9999999999999874 33 134788899999999999999999999987432 23445668889999999999
Q ss_pred hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHH
Q 008796 334 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 409 (553)
Q Consensus 334 ~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG 409 (553)
+++ +.+++..... ...++..+|.++...|++++|...+++++.+. . .....+..++
T Consensus 151 ~~~A~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~~~~~~ 210 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQ-------------RPESLLELAELYYLRGQYKDARAYLERYQQTY--N-----QTAESLWLGI 210 (234)
T ss_pred HHHHHHHHHHHHHhCcC-------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHH
Confidence 887 5555543211 23567899999999999999999999999882 1 1244556889
Q ss_pred HHHHHCCChHHHHHHHHHHHH
Q 008796 410 NLALALHDTVQAREILRSSLT 430 (553)
Q Consensus 410 ~i~lalGd~~eA~~~l~~AL~ 430 (553)
.++...|+.++|..+.+....
T Consensus 211 ~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 211 RIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999988776543
No 21
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.31 E-value=4.6e-10 Score=134.88 Aligned_cols=200 Identities=17% Similarity=0.087 Sum_probs=156.6
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhh-------
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM------- 316 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g------- 316 (553)
.+|.+++..|++++|+..+++++++ .|+. +.++..+|.++..+|++++|..+|++|++...+...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~---~P~~-----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA---NPKD-----SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 4588899999999999999999987 4542 457899999999999999999999999987765321
Q ss_pred ----HHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 317 ----QAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 317 ----~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL 388 (553)
........|.++...|++++ +.+++.+- |. .+.+++.+|.++..+|++++|+++|++++
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NT------------DSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23345677889999999887 55555541 11 34688999999999999999999999999
Q ss_pred HHHHHhccC------------------------------------hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 389 QIAHNHMGN------------------------------------LQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 389 ~Lar~elGd------------------------------------r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
++.- .... .......+..+|.++...|++++|++.+++|+.+.
T Consensus 413 ~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 413 RMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD 491 (1157)
T ss_pred HhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8731 1110 01112345568888999999999999999999763
Q ss_pred HHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 433 KKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 433 rklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+.-.+++..|+.+|...|++++|...++...+.
T Consensus 492 ------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 492 ------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 223567889999999999999999999887653
No 22
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.30 E-value=5.7e-10 Score=116.50 Aligned_cols=227 Identities=15% Similarity=0.081 Sum_probs=198.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh------
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS------ 315 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~------ 315 (553)
+-.++.+++-+|-|.++++.|+.|+++....+|. ..+-++.-.||.....+.+++.|+.+..+|+++.++..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~--~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA--MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc--eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 3448899999999999999999999999999994 44678999999999999999999999999999887633
Q ss_pred -hHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 316 -MQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 316 -g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
-.+.++..++..+...|+... +++|..+.-..||+. -.|.++..+|-+|...|+.+.|.+.|++|..+
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra-------~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA-------LQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH-------HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 267888999999998888543 999999888876553 27899999999999999999999999999999
Q ss_pred HHHhccChHhHHHHHHHHHHHHHHCCChHH-----HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 391 AHNHMGNLQLVSQYLTILGNLALALHDTVQ-----AREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 391 ar~elGdr~leA~aL~~LG~i~lalGd~~e-----A~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
.. ++||+-++..++...+...-...-... |.+.-++.+++|..+|....+......|+.+|+..|.-++=.+++
T Consensus 276 m~-~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~ 354 (518)
T KOG1941|consen 276 MA-SLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHV 354 (518)
T ss_pred Hh-hhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 95 899999999999999887766554444 999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhhH
Q 008796 466 EYRRKKLDELQKR 478 (553)
Q Consensus 466 e~a~~~~d~L~~~ 478 (553)
.++...-++++--
T Consensus 355 ~ra~~~~~e~~L~ 367 (518)
T KOG1941|consen 355 VRAHECVEETELY 367 (518)
T ss_pred HHHHHHHHHHhhh
Confidence 8887777766543
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.26 E-value=1.1e-09 Score=122.91 Aligned_cols=201 Identities=18% Similarity=0.101 Sum_probs=137.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchh--------------------------hhhHHHHHHHHHHHHHHc
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTIL--------------------------QACESMIEMLRGQYAHSV 294 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~--------------------------~~~~A~~~~lLG~~~~al 294 (553)
.+..++.++...|++++|++.+.+++++....++.. ....+.+...+|.++...
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHC
Confidence 345677777888888888888888876532211100 001234566678888888
Q ss_pred CCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHH
Q 008796 295 GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL 370 (553)
Q Consensus 295 G~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~ 370 (553)
|++++|...|.+++....+. .+..++|.++...|++++ +.+++... + . ...+++.+|.+
T Consensus 717 g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~---------~---~~~~~~~la~~ 779 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLKTH-P---------N---DAVLRTALAEL 779 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C---------C---CHHHHHHHHHH
Confidence 88888888888887765443 455677888888888776 33333211 0 1 24677888888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 008796 371 LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 450 (553)
Q Consensus 371 ~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ 450 (553)
+...|++++|...|+++++..- . -..+++.+|.++...|+ .+|+.++++++.+.. +. ..+...+|.
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~---~~---~~~~~~~~~ 845 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKKAP---D----NAVVLNNLAWLYLELKD-PRALEYAEKALKLAP---NI---PAILDTLGW 845 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHhCC---C----CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC---CC---cHHHHHHHH
Confidence 8888888888888888887631 1 24567788888888888 778888888887632 22 224567888
Q ss_pred HHHHcCCchHHHHHHHHHHHHH
Q 008796 451 LYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 451 ly~alGd~~~A~e~~e~a~~~~ 472 (553)
++...|++++|.+.++.+....
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC
Confidence 8888888888888888777643
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.23 E-value=2e-09 Score=120.61 Aligned_cols=197 Identities=17% Similarity=0.105 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
....+|.++...|++++|++.+.+++++. |+ .+.++..+|..+...|++++|...|.++++...+. ..+
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ 671 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PD-----SALALLLLADAYAVMKNYAKAITSLKRALELKPDN---TEA 671 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHH
Confidence 45667778888888888888888887653 33 13466778888888888888888888887654332 345
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh
Q 008796 321 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 400 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l 400 (553)
...++.++...|++++..+.+..+.... . ....++..+|.++...|++++|...|++++.... .+
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~--- 736 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-------P--KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP---SS--- 736 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-------c--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---Cc---
Confidence 5667777777777665333322222221 0 1345677788888888888888888888887641 11
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 401 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 401 eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.+...+|.++...|++.+|...+++++... + ....++..++.+|...|++++|.+.|+.....
T Consensus 737 --~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 737 --QNAIKLHRALLASGNTAEAVKTLEAWLKTH---P---NDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred --hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C---CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 456678888888888888888888777642 2 22456778888888888888888888776654
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.20 E-value=1.5e-09 Score=128.36 Aligned_cols=191 Identities=14% Similarity=0.002 Sum_probs=121.7
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
.++|.+....|++++|++.+.+++++ .|+. ..+...++.....+|++++|+.+|++|++..-+ +.++.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l---~P~~-----~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~----~~a~~ 613 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQR---GLGD-----NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS----ANAYV 613 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCcc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----HHHHH
Confidence 45566677777777777777777764 2441 122233444444558888888888877766542 45667
Q ss_pred HHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh
Q 008796 323 YAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 398 (553)
Q Consensus 323 NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr 398 (553)
++|.++...|++++ +.+++++- |- .+.+++++|.++...|++++|+..|++|+++.
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~-Pd------------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~------- 673 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELE-PN------------NSNYQAALGYALWDSGDIAQSREMLERAHKGL------- 673 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence 78888888888776 44444431 11 34677788888888888888888888887763
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
..-+.++.+||.++..+|++++|+..+++|+.+.. ..+.+....|.+.....+..+|.+.+.+...+
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P------~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID------NQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 12245677888888888888888888888877653 22233334555555555566666655555444
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=1.8e-09 Score=120.39 Aligned_cols=178 Identities=15% Similarity=0.081 Sum_probs=133.6
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHh
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~ 331 (553)
.+++++|.+.+++|+++ .|+ -+.++..+|.++...|++++|..+|++|+++.-+ -+.++.++|.++...
T Consensus 317 ~~~~~~A~~~~~~Al~l---dP~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~l~~~ 385 (553)
T PRK12370 317 QNAMIKAKEHAIKATEL---DHN-----NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI---SADIKYYYGWNLFMA 385 (553)
T ss_pred chHHHHHHHHHHHHHhc---CCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHC
Confidence 35589999999999987 455 2457889999999999999999999999988544 345778999999999
Q ss_pred CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHH
Q 008796 332 GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTI 407 (553)
Q Consensus 332 Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~ 407 (553)
|++++ +++|+.+ .|. . ..+.+.++.+++..|++++|...++++++... .....++..
T Consensus 386 G~~~eAi~~~~~Al~l-~P~--------~----~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~------p~~~~~~~~ 446 (553)
T PRK12370 386 GQLEEALQTINECLKL-DPT--------R----AAAGITKLWITYYHTGIDDAIRLGDELRSQHL------QDNPILLSM 446 (553)
T ss_pred CCHHHHHHHHHHHHhc-CCC--------C----hhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc------ccCHHHHHH
Confidence 99887 5566554 221 1 12334566678889999999999999876631 222446788
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 008796 408 LGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 467 (553)
Q Consensus 408 LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~ 467 (553)
+|.++..+|++++|+..+++.+.. .+....+...|+.+|...|+ +|...++.
T Consensus 447 la~~l~~~G~~~eA~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ 498 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEISTQ------EITGLIAVNLLYAEYCQNSE--RALPTIRE 498 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhccHH--HHHHHHHH
Confidence 999999999999999998765322 33445567788888888885 55554444
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.16 E-value=6.2e-09 Score=123.07 Aligned_cols=225 Identities=14% Similarity=0.080 Sum_probs=166.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
+|..-+.+... |..++|...+.+++.. . ++. + ....++.+....|+++
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~----~-----Pd~-----------~-----------~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQR----Q-----PDA-----------W-----------QHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHh----C-----Cch-----------H-----------HHHHHHHHHHHCCCHH
Confidence 34444444444 7788888877777766 1 111 0 1334555667899999
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 336 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~ 336 (553)
+|+..+++++.. .|+ ...+..+|..+...|++++|..+|.++++...+. .....+++......|++++
T Consensus 527 eAi~~~rka~~~---~p~------~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~---~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 527 TALAAWQKISLH---DMS------NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD---NALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHHHHHhcc---CCC------cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHhCCCHHH
Confidence 999999986433 232 1135678999999999999999999998764222 2333355666666799887
Q ss_pred ----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHH
Q 008796 337 ----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 412 (553)
Q Consensus 337 ----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~ 412 (553)
+.+|+.+ .. .+.+++++|.++..+|++++|...|++++.+. ...+.++++||.++
T Consensus 595 Al~~~~~AL~l------------~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-------Pd~~~a~~nLG~aL 653 (987)
T PRK09782 595 ALNDLTRSLNI------------AP--SANAYVARATIYRQRHNVPAAVSDLRAALELE-------PNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHh------------CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 4455433 11 14678999999999999999999999999984 22346899999999
Q ss_pred HHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 413 LALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 413 lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
...|++++|++++++|+.+. +.-..++..||.++...|++++|..+++.+.+..
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~------P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGL------PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999873 2334578899999999999999999999887665
No 28
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=4.2e-08 Score=101.39 Aligned_cols=286 Identities=10% Similarity=-0.060 Sum_probs=156.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHH---------HHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008796 180 MVVILGRPKGLFKECMQRIQSGMQTIQDA---------LLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 250 (553)
Q Consensus 180 ~tv~~~~~~G~~dka~ky~ekAL~~~~~~---------l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l 250 (553)
+-+.....+|++++|.+.++++++..-+. ...+|...+....-......+..... -....+..+|.++.
T Consensus 48 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~a~~~~ 125 (355)
T cd05804 48 VEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENP--DYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCC--CcHHHHHHHHHHHH
Confidence 45666777888888888888887651100 01112211100000000000000000 01234456666777
Q ss_pred hhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHH
Q 008796 251 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYF 329 (553)
Q Consensus 251 ~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-~~g~A~aL~NLA~vyl 329 (553)
.+|++++|.+.+++++++. |+. +.++..+|.++...|++++|..++.++++.... ......+...+|.+|.
T Consensus 126 ~~G~~~~A~~~~~~al~~~---p~~-----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 126 EAGQYDRAEEAARRALELN---PDD-----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC---CCC-----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 7777777777777777653 331 345666777777777777777777777665543 2223345556777777
Q ss_pred HhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHH
Q 008796 330 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 409 (553)
Q Consensus 330 ~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG 409 (553)
..|++++..+.++-..... . ........ .....+-..+...|....+.+. +........ ..+.......-...+
T Consensus 198 ~~G~~~~A~~~~~~~~~~~-~--~~~~~~~~-~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~-~~~~~~~~~~~~~~a 271 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPS-A--ESDPALDL-LDAASLLWRLELAGHVDVGDRW-EDLADYAAW-HFPDHGLAFNDLHAA 271 (355)
T ss_pred HCCCHHHHHHHHHHHhccc-c--CCChHHHH-hhHHHHHHHHHhcCCCChHHHH-HHHHHHHHh-hcCcccchHHHHHHH
Confidence 7777665222222221110 0 00111001 0000111222333332222222 111111111 101011111223577
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHH---hCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhHHHH
Q 008796 410 NLALALHDTVQAREILRSSLTLAKK---LYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLAD 481 (553)
Q Consensus 410 ~i~lalGd~~eA~~~l~~AL~LArk---lgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~~~~~ 481 (553)
.++...|+..+|...+++....++. .+............+.++...|++++|.+.+..+......++--+++
T Consensus 272 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq 346 (355)
T cd05804 272 LALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQ 346 (355)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 7888999999999999999998888 66677778888889999999999999999999999999887755544
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=8.5e-09 Score=114.98 Aligned_cols=210 Identities=11% Similarity=-0.001 Sum_probs=150.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 008796 187 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMK 266 (553)
Q Consensus 187 ~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL 266 (553)
..|.+++|...+++|++. .+. -...+..+|.++..+|++++|++.+++|+
T Consensus 316 ~~~~~~~A~~~~~~Al~l----------dP~--------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 365 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL----------DHN--------------------NPQALGLLGLINTIHSEYIVGSLLFKQAN 365 (553)
T ss_pred cchHHHHHHHHHHHHHhc----------CCC--------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 556788888888888877 122 12234567888899999999999999999
Q ss_pred HHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHH
Q 008796 267 NWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAID 342 (553)
Q Consensus 267 ~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~ 342 (553)
++ .|+ -+.+++.+|.++...|++++|..+|++|+++..+... +...++.++...|++++ +.+++.
T Consensus 366 ~l---~P~-----~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~---~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 366 LL---SPI-----SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA---AGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred Hh---CCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh---hHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 88 455 2457899999999999999999999999988665332 23345556777888775 233322
Q ss_pred hhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHH
Q 008796 343 LIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 422 (553)
Q Consensus 343 L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~ 422 (553)
...+- ...++.++|.++..+|++++|+..+.+.+... .+ -..+.+.|+.++...|+ .|.
T Consensus 435 ~~~p~------------~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~g~--~a~ 493 (553)
T PRK12370 435 QHLQD------------NPILLSMQVMFLSLKGKHELARKLTKEISTQE----IT---GLIAVNLLYAEYCQNSE--RAL 493 (553)
T ss_pred hcccc------------CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc----ch---hHHHHHHHHHHHhccHH--HHH
Confidence 21111 34578899999999999999999998764442 11 23456788999999985 788
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHH
Q 008796 423 EILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEN 464 (553)
Q Consensus 423 ~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~ 464 (553)
..++..+.....-..... .+..+|.-.||.+.|...
T Consensus 494 ~~l~~ll~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 494 PTIREFLESEQRIDNNPG------LLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHHHHHHhhHhhcCch------HHHHHHHHHhhhHHHHHH
Confidence 888886665544433222 267788888998887765
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=1.9e-08 Score=103.64 Aligned_cols=197 Identities=13% Similarity=0.034 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
.+..+.++|.++...|++++|+..+.+|+++ .|+. +.+++.+|.++..+|++++|...|.+|+++..+ .
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---~P~~-----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~ 131 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL---RPDM-----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---Y 131 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---C
Confidence 4556789999999999999999999999987 4652 568999999999999999999999999987544 3
Q ss_pred HHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
+.++.|+|.++...|++++ +++++.+ .|. +. ....+ ..+....+++++|++.|.++.....
T Consensus 132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-~P~--------~~--~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~- 196 (296)
T PRK11189 132 NYAYLNRGIALYYGGRYELAQDDLLAFYQD-DPN--------DP--YRALW---LYLAESKLDPKQAKENLKQRYEKLD- 196 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC--------CH--HHHHH---HHHHHccCCHHHHHHHHHHHHhhCC-
Confidence 5578999999999999887 5555543 221 11 11111 1234567899999999988764421
Q ss_pred hccChHhHHHHHHHHHHHHHHCCChHHH--HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 394 HMGNLQLVSQYLTILGNLALALHDTVQA--REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 394 elGdr~leA~aL~~LG~i~lalGd~~eA--~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
. +.. ..+.++..+|+..++ .+.+.+++....++. +....++..||.+|...|++++|..+|+.+...
T Consensus 197 -~-~~~-------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~--~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 197 -K-EQW-------GWNIVEFYLGKISEETLMERLKAGATDNTELA--ERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -c-ccc-------HHHHHHHHccCCCHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1 111 134555556666443 222333222222332 223557899999999999999999999887743
No 31
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=7.2e-09 Score=103.07 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=156.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
-.||.-++.+|++..|.+.++.|++.-..+.+ +|..+..++..+|..+.|-+.|++|+.+.- ..+.++|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~--------a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p---~~GdVLN 107 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYL--------AHLVRAHYYQKLGENDLADESYRKALSLAP---NNGDVLN 107 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH--------HHHHHHHHHHHcCChhhHHHHHHHHHhcCC---Cccchhh
Confidence 46788899999999999999999988544333 788899999999999999999999998754 4567899
Q ss_pred HHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh
Q 008796 323 YAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 398 (553)
Q Consensus 323 NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr 398 (553)
|-|.-.+.+|+|++ +++|++ .|.| +. .+.++-|+|++.++.|+++.|+.+|+++|++-. ....
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~--~P~Y------~~---~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~- 174 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALA--DPAY------GE---PSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPP- 174 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHh--CCCC------CC---cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCCh-
Confidence 99999999999997 777765 3543 22 678999999999999999999999999999963 3333
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
++..|+..+...|++..|+-+++.=... ...++.+|.+.-++-+..||.+.|.++-.+-.
T Consensus 175 -----~~l~~a~~~~~~~~y~~Ar~~~~~~~~~------~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 175 -----ALLELARLHYKAGDYAPARLYLERYQQR------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred -----HHHHHHHHHHhcccchHHHHHHHHHHhc------ccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5667899999999999999887643321 23778888888899999999888877654433
No 32
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.07 E-value=1.6e-08 Score=103.50 Aligned_cols=209 Identities=18% Similarity=0.060 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cchh
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESKS 315 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~---~d~~ 315 (553)
+-+.+.-|.++...+++.+|.+.|.+|.+++.+.++. ...+..+...+.++... ++++|..+|.+|+.++ ++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 3345777888899999999999999999999998884 55788888899998766 9999999999999976 4467
Q ss_pred hHHHHHHHHHHHHHHh-CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 316 MQAMCHAYAAVSYFCI-GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 316 g~A~aL~NLA~vyl~~-Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
..|.++.++|.+|... |+++. |.+|++++...+ .....+.++..+|.++...|+|++|...|++....
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7899999999999998 99987 999999999884 33447889999999999999999999999999886
Q ss_pred HHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCch
Q 008796 391 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRG 459 (553)
Q Consensus 391 ar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~ 459 (553)
.-..-..+...-..+...+-+++..||+..|...++..........+ ..+...+..|-+++. .||.+
T Consensus 185 ~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~-~~D~e 251 (282)
T PF14938_consen 185 CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYE-EGDVE 251 (282)
T ss_dssp CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHH-TT-CC
T ss_pred hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHH-hCCHH
Confidence 52222234566667788899999999999998888877655433333 455566666666664 35544
No 33
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.03 E-value=1.2e-07 Score=98.03 Aligned_cols=238 Identities=12% Similarity=-0.022 Sum_probs=169.1
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008796 167 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKV 246 (553)
Q Consensus 167 WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg 246 (553)
|.|.......+..+.+......|++++|.++++++++. . +. ....+..+|
T Consensus 106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~------p~--------------------~~~~~~~la 155 (355)
T cd05804 106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----N------PD--------------------DAWAVHAVA 155 (355)
T ss_pred cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----C------CC--------------------CcHHHHHHH
Confidence 45555555666667778889999999999999999988 1 11 112356678
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH--HH
Q 008796 247 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA--YA 324 (553)
Q Consensus 247 ~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~--NL 324 (553)
.++...|++++|++.+.++++.....++. ....+..+|.++...|++++|...|.+++............++ .+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~----~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSML----RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASL 231 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcch----hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHH
Confidence 88899999999999999999887653332 2346678999999999999999999988643321122222211 33
Q ss_pred HHHHHHhCChHH---HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---ccCh
Q 008796 325 AVSYFCIGDAES---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH---MGNL 398 (553)
Q Consensus 325 A~vyl~~Gd~e~---~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~e---lGdr 398 (553)
...+...|.... .+.......+.. +++ . ....-...+.++...|+.++|...+......+. . .+..
T Consensus 232 l~~~~~~g~~~~~~~w~~~~~~~~~~~--~~~--~---~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~ 303 (355)
T cd05804 232 LWRLELAGHVDVGDRWEDLADYAAWHF--PDH--G---LAFNDLHAALALAGAGDKDALDKLLAALKGRAS-SADDNKQP 303 (355)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhc--Ccc--c---chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-ccCchhhh
Confidence 344444554333 322223222211 110 1 111113588889999999999999999998874 5 4556
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALS 446 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~ 446 (553)
..........+-++...|++++|.+.+.+|+.++..+|.-..|-.+..
T Consensus 304 ~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~~~~~ 351 (355)
T cd05804 304 ARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQRDVFE 351 (355)
T ss_pred HHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 667888899999999999999999999999999999999888877654
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.01 E-value=5.2e-08 Score=111.60 Aligned_cols=265 Identities=16% Similarity=0.088 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHH-----------------
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLML----------------- 237 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L----------------- 237 (553)
+|.-+--+.+...+|+|-.+.+||.++|.+ ....+-.+ ++.+|-||+-+
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~i----np~~~aD~----------rIgig~Cf~kl~~~~~a~~a~~ralqLd 229 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRI----NPACKADV----------RIGIGHCFWKLGMSEKALLAFERALQLD 229 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhc----CcccCCCc----------cchhhhHHHhccchhhHHHHHHHHHhcC
Confidence 566677788999999999999999999998 44433222 24445554221
Q ss_pred --HHHHHHHHHHHHHhh---CCHHHHHHHHHHHHHHHHHCCchhh-----------------------------hhHHHH
Q 008796 238 --LMQFLENKVAVELTR---SGFVEAQEALVQMKNWFIRFPTILQ-----------------------------ACESMI 283 (553)
Q Consensus 238 --~a~lLenLg~~~l~~---Gr~aeAl~~l~qAL~L~r~~~dl~~-----------------------------~~~A~~ 283 (553)
-+-.+-.||.+.+.. ..|..+...+.+|-.+...+|+.+. ...|..
T Consensus 230 p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes 309 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAES 309 (1018)
T ss_pred hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 112233344443332 3344555555555555444454100 012223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHH
Q 008796 284 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 363 (553)
Q Consensus 284 ~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~a 363 (553)
.+.+|..++++|+|+.|-.+|.+|++...+. -...+..||..|+..|+.+......+-+-... .+ ...+
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~------p~---~~et 378 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL------PN---NYET 378 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhC------cc---hHHH
Confidence 4445555555555555555555554433332 33444555555555555444211111111110 01 3345
Q ss_pred HHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 364 HFAYGLLLMRQQ----DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 364 L~~LG~~~~~qG----r~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
+..+|.+|...+ ..++|..++.++++.. ..-+.+...|+.++ .++|+..+.+.+..|+.+....+-.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------~~d~~a~l~laql~-e~~d~~~sL~~~~~A~d~L~~~~~~- 449 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-------PVDSEAWLELAQLL-EQTDPWASLDAYGNALDILESKGKQ- 449 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------cccHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHcCCC-
Confidence 555666655554 3445555555555443 12234556666654 3457777788899999877777766
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
.....++++|-.|...|+++.|.+++..++...+
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 7788899999999999999999999999998844
No 35
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.00 E-value=6.8e-08 Score=94.70 Aligned_cols=181 Identities=12% Similarity=0.050 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
.+..+.++|..++..|+|++|+..+++++......|. ...++..+|..+...|++++|...|.++++...+....
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-----AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 4556788999999999999999999998776543332 34578999999999999999999999999988876666
Q ss_pred HHHHHHHHHHHHHhCC-----hHHHHHHHHhhcccccccccccch-----------hHHHHHHHHHHHHHHHcCCHHHHH
Q 008796 318 AMCHAYAAVSYFCIGD-----AESSSQAIDLIGPVYQMKDTINGV-----------REEASLHFAYGLLLMRQQDFQEAR 381 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd-----~e~~~qAL~L~r~lgd~~g~~~~l-----------r~eA~aL~~LG~~~~~qGr~~EA~ 381 (553)
..++.++|.++...+. ......|+..++.+.+........ ...+.....+|.+++.+|++.+|.
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 7789999999987621 111334444443322111100000 001123357899999999999999
Q ss_pred HHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 008796 382 NRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 427 (553)
Q Consensus 382 ~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~ 427 (553)
..++++++..- +....+.++..+|.++..+|++++|..+++.
T Consensus 187 ~~~~~al~~~p----~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 187 NRFETVVENYP----DTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHCC----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988752 2244578899999999999999999987654
No 36
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.00 E-value=5.8e-08 Score=99.40 Aligned_cols=182 Identities=15% Similarity=0.012 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccc
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKD 352 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~---~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g 352 (553)
.+..+.-.|..+...+++++|...|.+|.+.. ++....+.++.+.|.+|... +++. +.+|.+++...|
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G---- 108 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG---- 108 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC----
Confidence 45566667777777888888888888887755 44667888888988998775 7765 889999998884
Q ss_pred cccchhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 353 TINGVREEASLHFAYGLLLMRQ-QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 353 ~~~~lr~eA~aL~~LG~~~~~q-Gr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
....-|.++..+|.++... |++++|.++|.+|++++. ..|.....+.++..+|.++..+|++.+|.+.+++....
T Consensus 109 ---~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~-~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 109 ---RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE-QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp ----HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ---cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4445799999999999999 999999999999999995 78888999999999999999999999999999998776
Q ss_pred HHHhCC-hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 432 AKKLYD-IPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 432 ArklgD-~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
..+.+- .+.-...+...+-++...||+..|...++.+..
T Consensus 185 ~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 185 CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 544433 333333344556789999999999988887653
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=7.3e-09 Score=114.74 Aligned_cols=246 Identities=14% Similarity=0.179 Sum_probs=169.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q 008796 179 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 258 (553)
Q Consensus 179 l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeA 258 (553)
+|++.-....|+...++.-++.|+....+.-.+ -.+ +.| +|-++|.++..+++|++|
T Consensus 316 l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h---~~n---------t~w-----------vl~q~GrayFEl~~Y~~a 372 (638)
T KOG1126|consen 316 LMELLRGLGEGYRSLSQYNCREALNLFEKLPSH---HYN---------TGW-----------VLSQLGRAYFELIEYDQA 372 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh---cCC---------chH-----------HHHHHHHHHHHHHHHHHH
Confidence 566777778888889999999999994432111 111 112 578899999999999999
Q ss_pred HHHHHHHHHH----------HHH----CCc------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 008796 259 QEALVQMKNW----------FIR----FPT------------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 312 (553)
Q Consensus 259 l~~l~qAL~L----------~r~----~~d------------l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~ 312 (553)
.+.|+.+..+ |-. ..| ......+.....+|-++.-+++++.|+..|++|+.+-.
T Consensus 373 ~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp 452 (638)
T KOG1126|consen 373 ERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP 452 (638)
T ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC
Confidence 9999987665 110 000 01123466778899998889999999999999886543
Q ss_pred chhhHHHHHHHHHHHHHHhCC----hHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 313 SKSMQAMCHAYAAVSYFCIGD----AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 313 d~~g~A~aL~NLA~vyl~~Gd----~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL 388 (553)
. .+..|..+|. .++++.|..-+|...... . .--+||+.+|.+|+++++++.|.-+|++|+
T Consensus 453 ~----------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~----~--rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 453 R----------FAYAYTLLGHESIATEEFDKAMKSFRKALGVD----P--RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred c----------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC----c--hhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 1 2334444454 223666666666542221 1 146899999999999999999999999999
Q ss_pred HHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH---------------------------hC-ChHH
Q 008796 389 QIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK---------------------------LY-DIPT 440 (553)
Q Consensus 389 ~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArk---------------------------lg-D~~~ 440 (553)
.|- =.+ ...+..+|.++...|+.++|.+++++|+.+=.+ +- -.+.
T Consensus 517 ~IN---P~n----svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 517 EIN---PSN----SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred cCC---ccc----hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 983 222 345667999999999999999998888776221 11 1344
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 441 QIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 441 qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
++.++..||++|+..|+...|+-+|--+.+
T Consensus 590 es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 590 ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 556666677777777777766666554443
No 38
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=1.1e-07 Score=97.92 Aligned_cols=220 Identities=14% Similarity=0.061 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
+-+|..-++.+...|.+++|...++++++. .+. -...+.++|.++...|+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----------~P~--------------------~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL----------RPD--------------------MADAYNYLGIYLTQAGN 113 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------CCC--------------------CHHHHHHHHHHHHHCCC
Confidence 344667777888999999999999999886 122 12345789999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCCh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~ 334 (553)
+++|++.+.+|+++ .|+. +.++.++|.++...|++++|...|.+++++.-+..-. .... .++...+++
T Consensus 114 ~~~A~~~~~~Al~l---~P~~-----~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~---~l~~~~~~~ 181 (296)
T PRK11189 114 FDAAYEAFDSVLEL---DPTY-----NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWL---YLAESKLDP 181 (296)
T ss_pred HHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHH---HHHHccCCH
Confidence 99999999999987 4552 4478999999999999999999999999876543211 1111 122334555
Q ss_pred HHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hccChHhHHHHHHHHHHHH
Q 008796 335 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN--HMGNLQLVSQYLTILGNLA 412 (553)
Q Consensus 335 e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~--elGdr~leA~aL~~LG~i~ 412 (553)
++....+...-...+. . .+ ..+.++...|++.++ ..+..+.+-... +.+ ...+.++..||.++
T Consensus 182 ~~A~~~l~~~~~~~~~-----~------~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~--~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 182 KQAKENLKQRYEKLDK-----E------QW-GWNIVEFYLGKISEE-TLMERLKAGATDNTELA--ERLCETYFYLAKYY 246 (296)
T ss_pred HHHHHHHHHHHhhCCc-----c------cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHH
Confidence 5522222111111000 1 11 246777778887665 344444422210 122 22466899999999
Q ss_pred HHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 008796 413 LALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 453 (553)
Q Consensus 413 lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~ 453 (553)
..+|++++|+.+|++|+++- ..|-..-..++..|..+..
T Consensus 247 ~~~g~~~~A~~~~~~Al~~~--~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 247 LSLGDLDEAAALFKLALANN--VYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHh
Confidence 99999999999999999653 2243444444555554433
No 39
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.94 E-value=9.8e-09 Score=84.17 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh-HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL-VSQYLTILGNLALALHDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l-eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArk 434 (553)
.+.+++++|.++..+|+|++|+++|++|+++. +..|+... ++.++++||.++..+|++++|++++++|+++.++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 68899999999999999999999999999995 58998664 6999999999999999999999999999999875
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.92 E-value=9.8e-09 Score=103.83 Aligned_cols=228 Identities=19% Similarity=0.134 Sum_probs=86.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 008796 182 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 261 (553)
Q Consensus 182 v~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~ 261 (553)
+..+...|++++|.+...++...+ .. +. -..++..+|.+....+++++|++.
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~----~~----~~--------------------~~~~~~~~a~La~~~~~~~~A~~a 66 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKI----AP----PD--------------------DPEYWRLLADLAWSLGDYDEAIEA 66 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc----cc----cc--------------------cccccccccccccccccccccccc
Confidence 455667899888888776665551 00 11 112345567777888999999999
Q ss_pred HHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHH
Q 008796 262 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 341 (553)
Q Consensus 262 l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL 341 (553)
+++.+.+-...+. ....++.+ ...+++++|...+.++.+..++ ...+.....++...|+++.....+
T Consensus 67 y~~l~~~~~~~~~--------~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 67 YEKLLASDKANPQ--------DYERLIQL-LQDGDPEEALKLAEKAYERDGD----PRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccc--------cccccccc-cccccccccccccccccccccc----cchhhHHHHHHHHHhHHHHHHHHH
Confidence 9988876443333 34445555 5789999999999877765543 333455666788888888766665
Q ss_pred HhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHH
Q 008796 342 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 421 (553)
Q Consensus 342 ~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA 421 (553)
+-+.... ....-+..+...|.++...|++++|.+.+++||++. -.| ..++..|+.++...|+..++
T Consensus 134 ~~~~~~~-------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---P~~----~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 134 EKLEELP-------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD---PDD----PDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HHHHH-T----------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-----HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhcc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC----HHHHHHHHHHHHHCCChHHH
Confidence 5544331 111256788999999999999999999999999985 122 33577788889999999887
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 422 REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 422 ~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
.+.++........-++ ....+|.+|..+|++++|.+.++.+.+
T Consensus 200 ~~~l~~~~~~~~~~~~------~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 200 REALKRLLKAAPDDPD------LWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHH-HTSCC------HCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHH------HHHHHHHHhcccccccccccccccccc
Confidence 7777776665533332 234678889999999999999988765
No 41
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=2.6e-07 Score=92.11 Aligned_cols=196 Identities=12% Similarity=0.037 Sum_probs=153.2
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008796 170 KSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVE 249 (553)
Q Consensus 170 ~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~ 249 (553)
+.+.-+=+++=-++-++.+|++..|.+-.++||++ ++.. +..| -.++.++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~---------DPs~--------~~a~-------------~~~A~~Y 79 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH---------DPSY--------YLAH-------------LVRAHYY 79 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------Cccc--------HHHH-------------HHHHHHH
Confidence 45566667777788899999999999999999999 2222 2222 2344566
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 329 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl 329 (553)
...|+.+.|.+.|++|+.+--..|| ++|+-|...+++|+|++|..+|.+|+. .-.-...+.++-|+|+|-+
T Consensus 80 q~~Ge~~~A~e~YrkAlsl~p~~Gd--------VLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 80 QKLGENDLADESYRKALSLAPNNGD--------VLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCAL 150 (250)
T ss_pred HHcCChhhHHHHHHHHHhcCCCccc--------hhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHh
Confidence 8899999999999999999776666 899999999999999999999999984 3344567889999999999
Q ss_pred HhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHH
Q 008796 330 CIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 405 (553)
Q Consensus 330 ~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL 405 (553)
..|+++. +.+||++-... ..++..++..++..|+|.+|+-++.+-. +-|. ..|.+|
T Consensus 151 ~~gq~~~A~~~l~raL~~dp~~-------------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~-----~~~~--~~A~sL 210 (250)
T COG3063 151 KAGQFDQAEEYLKRALELDPQF-------------PPALLELARLHYKAGDYAPARLYLERYQ-----QRGG--AQAESL 210 (250)
T ss_pred hcCCchhHHHHHHHHHHhCcCC-------------ChHHHHHHHHHHhcccchHHHHHHHHHH-----hccc--ccHHHH
Confidence 9999886 88999875544 2356678888999999999999987542 2333 567777
Q ss_pred HHHHHHHHHCCChHHHHHH
Q 008796 406 TILGNLALALHDTVQAREI 424 (553)
Q Consensus 406 ~~LG~i~lalGd~~eA~~~ 424 (553)
-..-.+.-..||...|-.+
T Consensus 211 ~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 211 LLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHHhccHHHHHHH
Confidence 7777777777776665544
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.87 E-value=8.2e-07 Score=95.42 Aligned_cols=245 Identities=12% Similarity=0.088 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
.+.|++.+......|+++++.++++++.+. .+... ..+.-..+.+.+..|+
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-------~p~~~----------------------l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAEL-------AGNDN----------------------ILVEIARTRILLAQNE 168 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCcCc----------------------hHHHHHHHHHHHHCCC
Confidence 367888899999999999999999998654 11111 0111223677789999
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH-HHHHHHHHHHHHhCC
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA-MCHAYAAVSYFCIGD 333 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A-~aL~NLA~vyl~~Gd 333 (553)
+++|++.++..++. .|+- +.++..+|..+...|++++|...+.+.++..-...... ........-.+..|.
T Consensus 169 ~~~Al~~l~~l~~~---~P~~-----~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 169 LHAARHGVDKLLEM---APRH-----KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877665 4662 45888999999999999999999998776521111111 111111111122222
Q ss_pred hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------
Q 008796 334 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH--------------- 394 (553)
Q Consensus 334 ~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~e--------------- 394 (553)
.++ +..+....-. ..+........+|..+...|++++|...++++++..-..
T Consensus 241 ~~~~~~~L~~~~~~~p~---------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPR---------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HhcCHHHHHHHHHHCCH---------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC
Confidence 222 2222221110 001134555666667777777777777777776642100
Q ss_pred ------------------ccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q 008796 395 ------------------MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 456 (553)
Q Consensus 395 ------------------lGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alG 456 (553)
-+|+. +..+..||.++...|++++|.++++.|..+.. -+|... ...||+++...|
T Consensus 312 ~~~~~~~~~~~e~~lk~~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~~~~----~~~La~ll~~~g 384 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNVDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLDAND----LAMAADAFDQAG 384 (409)
T ss_pred CCChHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCCHHH----HHHHHHHHHHcC
Confidence 11111 24566777777777777777777774333322 122221 226677777777
Q ss_pred CchHHHHHHHHHHHHH
Q 008796 457 DRGNEMENDEYRRKKL 472 (553)
Q Consensus 457 d~~~A~e~~e~a~~~~ 472 (553)
++++|.++++.+....
T Consensus 385 ~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 385 DKAEAAAMRQDSLGLM 400 (409)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7777777777654443
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.83 E-value=7e-07 Score=87.53 Aligned_cols=177 Identities=15% Similarity=0.048 Sum_probs=135.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccccccccc
Q 008796 278 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 353 (553)
Q Consensus 278 ~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~ 353 (553)
...+..+..+|..+...|++++|...|.+++....+......++.++|.+|...|++++ +.+++...-.-
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------ 103 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH------ 103 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC------
Confidence 44567889999999999999999999999988877666666788999999999999887 44444332211
Q ss_pred ccchhHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhccChHhHH------------HHHHHHHHHHH
Q 008796 354 INGVREEASLHFAYGLLLMRQ--------QDFQEARNRLAKGLQIAHNHMGNLQLVS------------QYLTILGNLAL 413 (553)
Q Consensus 354 ~~~lr~eA~aL~~LG~~~~~q--------Gr~~EA~~~L~eAL~Lar~elGdr~leA------------~aL~~LG~i~l 413 (553)
.. ...+++.+|.++... |++++|.+.+.++++..- .... ...+ .....+|.++.
T Consensus 104 -~~---~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~-~~~a~~~~~~~~~~~~~~~~~~a~~~~ 177 (235)
T TIGR03302 104 -PD---ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEY-APDAKKRMDYLRNRLAGKELYVARFYL 177 (235)
T ss_pred -Cc---hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 345789999999876 899999999999987742 1111 1111 12347899999
Q ss_pred HCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 414 ALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 414 alGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
..|++.+|...+++++... ++.+....++..+|.+|..+|++++|.++++...
T Consensus 178 ~~g~~~~A~~~~~~al~~~---p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 178 KRGAYVAAINRFETVVENY---PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HcCChHHHHHHHHHHHHHC---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999998664 3334556788899999999999999998766543
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.82 E-value=8.2e-07 Score=102.91 Aligned_cols=246 Identities=9% Similarity=-0.012 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
+-++...+..++..|++++|.+.++++++. .+. . ......++.+....|+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----------~P~--------~------------~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL----------EPQ--------N------------DDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC--------C------------HHHHHHHHHHHHHCCC
Confidence 344566677889999999999999999887 122 0 1123478888899999
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCCh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~ 334 (553)
+++|+..++++++. .|+. +. +..+|.++...|++++|+..|++++++.-+. ..++.++|.++...|.+
T Consensus 99 ~~eA~~~l~~~l~~---~P~~-----~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~---~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 99 YDEALVKAKQLVSG---APDK-----AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT---QQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHHHHHHHh---CCCC-----HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCh
Confidence 99999999999877 5662 33 7788999999999999999999999876553 23333456666655555
Q ss_pred HH----H---------------------------------------HHHHHhhcccccc-cccccchhHHHHHHHH-HHH
Q 008796 335 ES----S---------------------------------------SQAIDLIGPVYQM-KDTINGVREEASLHFA-YGL 369 (553)
Q Consensus 335 e~----~---------------------------------------~qAL~L~r~lgd~-~g~~~~lr~eA~aL~~-LG~ 369 (553)
+. + .+|++.+...-.. +.+-........+... +|.
T Consensus 167 e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 167 APALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 42 1 2222222211100 0000000011222222 454
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008796 370 LLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLT 449 (553)
Q Consensus 370 ~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg 449 (553)
+ ..+|++++|+..|++.++.. ..-. ..+...+|.+++.+|++++|+..+++++.... .+..........|+
T Consensus 247 L-l~~g~~~eA~~~~~~ll~~~--~~~P----~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p--~~~~~~~~~~~~L~ 317 (765)
T PRK10049 247 L-LARDRYKDVISEYQRLKAEG--QIIP----PWAQRWVASAYLKLHQPEKAQSILTELFYHPE--TIADLSDEELADLF 317 (765)
T ss_pred H-HHhhhHHHHHHHHHHhhccC--CCCC----HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC--CCCCCChHHHHHHH
Confidence 4 67799999999999977652 1111 12334469999999999999999999875321 11111123445677
Q ss_pred HHHHHcCCchHHHHHHHHHHHH
Q 008796 450 ALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 450 ~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.++...|++++|...++.....
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhc
Confidence 7789999999999998876654
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.82 E-value=8.2e-07 Score=95.23 Aligned_cols=237 Identities=14% Similarity=0.103 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
+.|++........|+++++..|+++|.+. .+. . .....-..+.+++.+|++
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~----------~~~--------~-----------~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAEL----------ADN--------D-----------QLPVEITRVRIQLARNEN 169 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------CCc--------c-----------hHHHHHHHHHHHHHCCCH
Confidence 44778888889999999999999999766 111 0 001111226677999999
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH---HHHHHHHHHHhC
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC---HAYAAVSYFCIG 332 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a---L~NLA~vyl~~G 332 (553)
++|++.++++.+.. |+- ..++..++..+...|++++|.+.+....+.......+..- ...++.+....+
T Consensus 170 ~~Al~~l~~~~~~~---P~~-----~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 170 HAARHGVDKLLEVA---PRH-----PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998886664 552 3477888899999999999998877665432211111110 000111111000
Q ss_pred C--hHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHc-------------------------------CCHHH
Q 008796 333 D--AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ-------------------------------QDFQE 379 (553)
Q Consensus 333 d--~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~q-------------------------------Gr~~E 379 (553)
+ .+.+.+...-.-.. .+....+...++..+... |++++
T Consensus 242 ~~~~~~l~~~w~~lp~~---------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~ 312 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK---------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQ 312 (398)
T ss_pred hcCHHHHHHHHHhCCHH---------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHH
Confidence 0 01111111110000 001123334444444444 44555
Q ss_pred HHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCch
Q 008796 380 ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRG 459 (553)
Q Consensus 380 A~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~ 459 (553)
|+..+++-++.. -. -+..+..+|.++...|++++|+++++.++... ++. .....|+.++.+.|+++
T Consensus 313 al~~~e~~lk~~---P~----~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~---P~~----~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 313 LEKVLRQQIKQH---GD----TPLLWSTLGQLLMKHGEWQEASLAFRAALKQR---PDA----YDYAWLADALDRLHKPE 378 (398)
T ss_pred HHHHHHHHHhhC---CC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCH----HHHHHHHHHHHHcCCHH
Confidence 544444444331 11 24467889999999999999999999998762 222 22457999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008796 460 NEMENDEYRRKKL 472 (553)
Q Consensus 460 ~A~e~~e~a~~~~ 472 (553)
+|.++|+......
T Consensus 379 ~A~~~~~~~l~~~ 391 (398)
T PRK10747 379 EAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhhh
Confidence 9999998876654
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.3e-08 Score=105.46 Aligned_cols=203 Identities=14% Similarity=0.075 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
+.|+.+++++..-|.+++|++|+-||-.. -...| +-|+| .|-..-..|+-
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~l----D~~fg-------------paWl~-------------fghsfa~e~Eh 362 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTL----DPTFG-------------PAWLA-------------FGHSFAGEGEH 362 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhc----Ccccc-------------HHHHH-------------HhHHhhhcchH
Confidence 34666777777779999999999999877 22211 34431 23333889999
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChH
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 335 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e 335 (553)
++|...|..|-+++....- +. --+|.-++.++.+..|..+|.+|+.++-.- -.+++-+|.+....+++.
T Consensus 363 dQAmaaY~tAarl~~G~hl------P~--LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D---plv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCHL------PS--LYLGMEYMRTNNLKLAEKFFKQALAIAPSD---PLVLHELGVVAYTYEEYP 431 (611)
T ss_pred HHHHHHHHHHHHhccCCcc------hH--HHHHHHHHHhccHHHHHHHHHHHHhcCCCc---chhhhhhhheeehHhhhH
Confidence 9999999999999875322 11 247899999999999999999999887553 356788888888777776
Q ss_pred H----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHH
Q 008796 336 S----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 411 (553)
Q Consensus 336 ~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i 411 (553)
+ +..+|.-+..+.... . .=.-.++|+|.++.++++|++|+.++++||.+.- .. +.+...+|-+
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~----~--~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~------~~~~asig~i 498 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEK----I--FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KD------ASTHASIGYI 498 (611)
T ss_pred HHHHHHHHHHHHhhhccccc----c--chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-Cc------hhHHHHHHHH
Confidence 6 777776666553211 1 1245789999999999999999999999999962 22 3477789999
Q ss_pred HHHCCChHHHHHHHHHHHHHH
Q 008796 412 ALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 412 ~lalGd~~eA~~~l~~AL~LA 432 (553)
|+.+|+++.|.+++..||.+.
T Consensus 499 y~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 499 YHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999884
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.77 E-value=2.8e-06 Score=98.54 Aligned_cols=205 Identities=10% Similarity=-0.124 Sum_probs=145.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch-hhHHHHHHH
Q 008796 245 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-SMQAMCHAY 323 (553)
Q Consensus 245 Lg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~-~g~A~aL~N 323 (553)
++.+ +.+|++++|++.|+++++.....|+. +...+|.++..+|++++|+.+|.++++..... ........+
T Consensus 244 l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~-------a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 244 LGAL-LARDRYKDVISEYQRLKAEGQIIPPW-------AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHH-HHhhhHHHHHHHHHHhhccCCCCCHH-------HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 4444 67799999999999988763333542 23336889999999999999999987643221 111345667
Q ss_pred HHHHHHHhCChHHHHHHHHhhcccc-------cccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 324 AAVSYFCIGDAESSSQAIDLIGPVY-------QMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 324 LA~vyl~~Gd~e~~~qAL~L~r~lg-------d~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
++.++...|++++..+.++-+.+.. ..+. ...-.....++..+|.++...|++++|...+++++... -+
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~-~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~---P~ 391 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT-SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA---PG 391 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC-CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC
Confidence 7788899999887322222222110 0000 00001235677899999999999999999999998874 23
Q ss_pred ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 397 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 397 dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+ ...+..+|.++...|++++|++.+++|+.+. +|... ....++.++...|++++|...++...+.
T Consensus 392 n----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~---Pd~~~---l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 392 N----QGLRIDYASVLQARGWPRAAENELKKAEVLE---PRNIN---LEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCChH---HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3 3588999999999999999999999999875 44333 6667778899999999888877666543
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.9e-07 Score=102.20 Aligned_cols=198 Identities=16% Similarity=0.149 Sum_probs=150.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHH
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 323 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~N 323 (553)
..|+-++..|++++|.+++..|..+-..++. +.-..|+.....|..++|...|..|.++..... .=...
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~fgp--------aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h---lP~LY 385 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTFGP--------AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH---LPSLY 385 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccccH--------HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---chHHH
Confidence 4455567778888888888888777665554 444567777777888888888887777664422 12345
Q ss_pred HHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChH
Q 008796 324 AAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 399 (553)
Q Consensus 324 LA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~ 399 (553)
+|+=|.+.+...- +.+|+++.-.. . .+++-+|.+.+.-+.|.+|..+|+.+|.-.. +.++..
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~D--------p-----lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik-~~~~e~ 451 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSD--------P-----LVLHELGVVAYTYEEYPEALKYFQKALEVIK-SVLNEK 451 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCc--------c-----hhhhhhhheeehHhhhHHHHHHHHHHHHHhh-hccccc
Confidence 6666766666442 77787765432 1 4678899999999999999999999997774 666643
Q ss_pred h-HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 400 L-VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 400 l-eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
. -.-.+++||+++..++.+.+|+..+++||.+..+. ..++..+|-+|.-+|+.+.|.++|..++.+.
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~------~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD------ASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 2 34479999999999999999999999999997555 3456789999999999999999999887653
No 49
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.73 E-value=1.3e-07 Score=77.48 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=68.9
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT-QIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~-qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
..++.++++||.++..+|++++|++++++|+++.+..|+... .++++..||.+|...|++++|.++++.+.++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 467889999999999999999999999999999989998765 599999999999999999999999999998875
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.72 E-value=2.2e-07 Score=94.04 Aligned_cols=229 Identities=19% Similarity=0.107 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
-+|.+.+..+...|++++|.+.+++.+.. .+. . ...+..++.+ +..++|
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~-----~~~--~-----------------------~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLAS-----DKA--N-----------------------PQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc-----ccc--c-----------------------cccccccccc-cccccc
Confidence 34455566677788888888888877765 111 0 1113455555 688899
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChH
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 335 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e 335 (553)
.+|.+.+..+.+-. ++ +..+.....++...++++++...+..+.. .......+..+...|.++...|+++
T Consensus 94 ~~A~~~~~~~~~~~---~~------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 94 EEALKLAEKAYERD---GD------PRYLLSALQLYYRLGDYDEAEELLEKLEE-LPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHH
T ss_pred cccccccccccccc---cc------cchhhHHHHHHHHHhHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 99998887765433 33 11223344456778888888888887663 2223456777888889999999877
Q ss_pred H----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHH
Q 008796 336 S----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 411 (553)
Q Consensus 336 ~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i 411 (553)
+ +.+|+++.-. -..++..++.++...|++++|++.+....+... .... ....+|.+
T Consensus 164 ~A~~~~~~al~~~P~-------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~-~~~~------~~~~la~~ 223 (280)
T PF13429_consen 164 KALRDYRKALELDPD-------------DPDARNALAWLLIDMGDYDEAREALKRLLKAAP-DDPD------LWDALAAA 223 (280)
T ss_dssp HHHHHHHHHHHH-TT--------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-TSCC------HCHHHHHH
T ss_pred HHHHHHHHHHHcCCC-------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-CHHH------HHHHHHHH
Confidence 6 6666654221 234667788888888999998888887776652 1222 34567888
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 412 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 412 ~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+..+|++.+|..++++++.. -++. ..++..+++++...|+.++|.+..+++...
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~---~p~d---~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKL---NPDD---PLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHH---STT----HHHHHHHHHHHT------------------
T ss_pred hccccccccccccccccccc---cccc---cccccccccccccccccccccccccccccc
Confidence 99999999999999987643 2222 235567889999999999998888776554
No 51
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=4.9e-07 Score=103.70 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=133.7
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
..+-.+.-..|+...+...+-+++.+.+++|+. +.++.+||.+....|++++|++++..++.+.-+ -+.+..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---~~~a~~ 124 (694)
T PRK15179 53 QQARQVLERHAAVHKPAAALPELLDYVRRYPHT-----ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---SSEAFI 124 (694)
T ss_pred HHHHHHHHHhhhhcchHhhHHHHHHHHHhcccc-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---cHHHHH
Confidence 333444456677788888999999999999983 669999999999999999999999999887644 466788
Q ss_pred HHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHH
Q 008796 323 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 402 (553)
Q Consensus 323 NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA 402 (553)
+.|.+..+.+++++ |+..++...+.. -..+.+++.+|.+...+|+|++|.+.|+++++ -+ ...+
T Consensus 125 ~~a~~L~~~~~~ee---A~~~~~~~l~~~------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~-~~------p~~~ 188 (694)
T PRK15179 125 LMLRGVKRQQGIEA---GRAEIELYFSGG------SSSAREILLEAKSWDEIGQSEQADACFERLSR-QH------PEFE 188 (694)
T ss_pred HHHHHHHHhccHHH---HHHHHHHHhhcC------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh-cC------CCcH
Confidence 89999999999876 222222221111 11678999999999999999999999999987 21 2446
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 403 QYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 403 ~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
.++..+|..+...|+.++|...|++|++.+
T Consensus 189 ~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 189 NGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999884
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.69 E-value=2.4e-06 Score=98.32 Aligned_cols=214 Identities=14% Similarity=0.050 Sum_probs=148.2
Q ss_pred chhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008796 169 PKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAV 248 (553)
Q Consensus 169 p~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~ 248 (553)
--.++.+-.|+-.+-.+..+|+|++|.+||..++.. .+ +. -..-+..||..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----~~-----d~--------------------~~l~~~GlgQm 351 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA----DN-----DN--------------------FVLPLVGLGQM 351 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----CC-----CC--------------------ccccccchhHH
Confidence 445566677788888888888888888888887777 11 11 12234567777
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHccchhhHHHHHHHH
Q 008796 249 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG----CYSEAAFHYVEAAKITESKSMQAMCHAYA 324 (553)
Q Consensus 249 ~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG----~yeeAl~~f~~AL~l~~d~~g~A~aL~NL 324 (553)
++..|++.+|..+|+..+. +.|+. .-..-.||..+...+ .-+.|..+..++++.. ..-+.+..++
T Consensus 352 ~i~~~dle~s~~~fEkv~k---~~p~~-----~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---~~d~~a~l~l 420 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLK---QLPNN-----YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---PVDSEAWLEL 420 (1018)
T ss_pred HHHhchHHHHHHHHHHHHH---hCcch-----HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc---cccHHHHHHH
Confidence 7888888888888886554 45552 124455666655554 5566666666666543 3345567778
Q ss_pred HHHHHHhCChHH---HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh-
Q 008796 325 AVSYFCIGDAES---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL- 400 (553)
Q Consensus 325 A~vyl~~Gd~e~---~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l- 400 (553)
|.+|....-... +..|++++...+... ....++++|..|+..|.+.+|+.++.+|+..+. +.-|.-.
T Consensus 421 aql~e~~d~~~sL~~~~~A~d~L~~~~~~i--------p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~-~~~n~de~ 491 (1018)
T KOG2002|consen 421 AQLLEQTDPWASLDAYGNALDILESKGKQI--------PPEVLNNVASLHFRLGNIEKALEHFKSALGKLL-EVANKDEG 491 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHcCCCC--------CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh-hhcCcccc
Confidence 888866333333 888888877764332 457999999999999999999999999999963 3333211
Q ss_pred ---HHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 401 ---VSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 401 ---eA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
.-...++||.+.-..+++..|.++|.+-+..
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 1235789999999999999999998776644
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.9e-06 Score=91.56 Aligned_cols=195 Identities=16% Similarity=0.076 Sum_probs=151.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q 008796 246 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 325 (553)
Q Consensus 246 g~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA 325 (553)
|--+..+++-..|+.+|++|+.+. |. -..++.++|+=++-+.+...|...|+.|+++... --.+...||
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLN---p~-----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~---DyRAWYGLG 405 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLN---PK-----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR---DYRAWYGLG 405 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcC---cc-----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch---hHHHHhhhh
Confidence 444556677788888888888774 33 3558999999999999999999999999987532 235678889
Q ss_pred HHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhH
Q 008796 326 VSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 401 (553)
Q Consensus 326 ~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~le 401 (553)
..|.-.+-+.- +.+|+.+ +|- -...|..||.+|...++.+||+.+|.+|+... | .+
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~-kPn------------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-----d--te 465 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALEL-KPN------------DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-----D--TE 465 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhc-CCC------------chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-----c--cc
Confidence 99988888665 7777764 454 23578999999999999999999999998775 2 26
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 402 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT-QIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 402 A~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~-qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+.+|+.||.+|-.+++..+|..++++=+.....-|.... -..+..-|+.-+...+++++|..+.....+.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 679999999999999999999999998886533333221 2334445999999999999999877665554
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=2.9e-05 Score=80.92 Aligned_cols=212 Identities=17% Similarity=0.038 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-hhhHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAM 319 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-~~g~A~ 319 (553)
+.--||.....+|+.+.|++.....+ ..||++-.....+..-||.-+++.|-+|.|+..|. ..-| ..-.-.
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~----~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~----~L~de~efa~~ 142 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLL----ESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN----QLVDEGEFAEG 142 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHhcchhhhHH
Confidence 34456777799999999887665432 36887777778899999999999999999999998 4444 445557
Q ss_pred HHHHHHHHHHHhCChHH-HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh
Q 008796 320 CHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 398 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr 398 (553)
++..|-.+|....+.++ .+-|-.+..--+.. ..-+.|..+.-++..+....+.+.|+..+.+||+...+ .
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-----~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-c--- 213 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQT-----YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-C--- 213 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-----chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-c---
Confidence 88889999988777766 44443333222111 12347999999999999999999999999999988532 1
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~ 477 (553)
+.+-..||.+++..|++.+|.+.++..++ .|+.-...++..|..+|..+|++++....+..++........
T Consensus 214 ---vRAsi~lG~v~~~~g~y~~AV~~~e~v~e-----Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 214 ---VRASIILGRVELAKGDYQKAVEALERVLE-----QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred ---eehhhhhhHHHHhccchHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 23456799999999999999999998875 466667778899999999999999999888887766544433
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.57 E-value=1e-05 Score=86.95 Aligned_cols=214 Identities=11% Similarity=0.064 Sum_probs=140.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Q 008796 181 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 260 (553)
Q Consensus 181 tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~ 260 (553)
-+......|++++|....++.++. .|. ...++.-++.+++.+|++++|.+
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~----------~P~--------------------~~~~l~ll~~~~~~~~d~~~a~~ 208 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEM----------APR--------------------HKEVLKLAEEAYIRSGAWQALDD 208 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----------CCC--------------------CHHHHHHHHHHHHHHhhHHHHHH
Confidence 367777899999998887777666 122 11234556666677777777776
Q ss_pred HHHHHHHH-----------------------------------HHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008796 261 ALVQMKNW-----------------------------------FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYV 305 (553)
Q Consensus 261 ~l~qAL~L-----------------------------------~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~ 305 (553)
.+.+.++. ....|+. ......+....+......|++++|.....
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~ 287 (409)
T TIGR00540 209 IIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIF 287 (409)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 66655532 1122321 11245677888889999999999999999
Q ss_pred HHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008796 306 EAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLA 385 (553)
Q Consensus 306 ~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~ 385 (553)
++++..-+.......+. ....++..++.+.+.+.++..-.. .+ .+. .+..+..+|.++++.|++++|+++|+
T Consensus 288 ~~l~~~pd~~~~~~~~l-~~~~~l~~~~~~~~~~~~e~~lk~--~p---~~~--~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 288 DGLKKLGDDRAISLPLC-LPIPRLKPEDNEKLEKLIEKQAKN--VD---DKP--KCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHhhCCCcccchhHHH-HHhhhcCCCChHHHHHHHHHHHHh--CC---CCh--hHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99987666443322221 222333345544433332222211 00 111 23778899999999999999999999
Q ss_pred HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 386 KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 386 eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
++..+.. .-+ .+ ....||.++..+|++++|.+++++++.++-.++|.+
T Consensus 360 ~a~a~~~--~p~--~~--~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~~~ 407 (409)
T TIGR00540 360 NVAACKE--QLD--AN--DLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQDNI 407 (409)
T ss_pred HhHHhhc--CCC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccC
Confidence 7655531 112 22 233889999999999999999999999998888754
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=5.7e-07 Score=100.03 Aligned_cols=193 Identities=14% Similarity=0.044 Sum_probs=147.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q 008796 178 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 257 (553)
Q Consensus 178 ~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ae 257 (553)
|-..+-||-.+++.+.|+|++++|++. + -++..+ + --+|-=+..+-+|+.
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQl-----d-p~faYa--------y----------------TLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQL-----D-PRFAYA--------Y----------------TLLGHESIATEEFDK 473 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhcc-----C-Cccchh--------h----------------hhcCChhhhhHHHHh
Confidence 445567888899999999999999988 1 122222 1 112223366778899
Q ss_pred HHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH-
Q 008796 258 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES- 336 (553)
Q Consensus 258 Al~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~- 336 (553)
|.++|+.|+.+ .|+- -.+.+-+|+++..+++++.|+.||+.|+.+.-. -...+..+|.++.+.|+.|+
T Consensus 474 a~~~fr~Al~~---~~rh-----YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~---nsvi~~~~g~~~~~~k~~d~A 542 (638)
T KOG1126|consen 474 AMKSFRKALGV---DPRH-----YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS---NSVILCHIGRIQHQLKRKDKA 542 (638)
T ss_pred HHHHHHhhhcC---Cchh-----hHHHHhhhhheeccchhhHHHHHHHhhhcCCcc---chhHHhhhhHHHHHhhhhhHH
Confidence 99999988876 3442 348899999999999999999999999876533 23456778999999999776
Q ss_pred ---HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHH
Q 008796 337 ---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 413 (553)
Q Consensus 337 ---~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~l 413 (553)
+++|..+ .+. + -.+-|..|.+++..++|+||+..|++--+++ .-++.++..||.||-
T Consensus 543 L~~~~~A~~l-d~k--------n----~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-------P~es~v~~llgki~k 602 (638)
T KOG1126|consen 543 LQLYEKAIHL-DPK--------N----PLCKYHRASILFSLGRYVEALQELEELKELV-------PQESSVFALLGKIYK 602 (638)
T ss_pred HHHHHHHHhc-CCC--------C----chhHHHHHHHHHhhcchHHHHHHHHHHHHhC-------cchHHHHHHHHHHHH
Confidence 5555443 222 1 2466888999999999999999999987775 567889999999999
Q ss_pred HCCChHHHHHHHHHHHHH
Q 008796 414 ALHDTVQAREILRSSLTL 431 (553)
Q Consensus 414 alGd~~eA~~~l~~AL~L 431 (553)
..|+..-|.-++.-|+.+
T Consensus 603 ~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 603 RLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHccchHHHHhhHHHhcC
Confidence 999999999998777766
No 57
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.51 E-value=2.5e-06 Score=80.14 Aligned_cols=114 Identities=17% Similarity=0.092 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccccccccc
Q 008796 278 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT 353 (553)
Q Consensus 278 ~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~ 353 (553)
...+.++..+|..+...|++++|+..|.+|+.+..+....+.++.|+|.+|...|++++ +.+|+.+.....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~----- 106 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP----- 106 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-----
Confidence 34688999999999999999999999999999887766678899999999999999987 777776532221
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 354 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 354 ~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
......+.++.++|..+..+|++++|+..+.+|+....+..|.
T Consensus 107 -~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 107 -QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred -HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 1222345556666666669999999999999999987654333
No 58
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.50 E-value=7e-06 Score=80.28 Aligned_cols=116 Identities=21% Similarity=0.146 Sum_probs=73.0
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHH-HHH
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS-YFC 330 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~v-yl~ 330 (553)
.++.++++..++++++. .|+- +..+..+|.++..+|++++|...|.+|+++..+ .+..+.++|.+ |..
T Consensus 52 ~~~~~~~i~~l~~~L~~---~P~~-----~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~ 120 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA---NPQN-----SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQ 120 (198)
T ss_pred chhHHHHHHHHHHHHHH---CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHh
Confidence 45667777777777655 5552 448899999999999999999999998877543 24444555554 344
Q ss_pred hCCh--HH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 331 IGDA--ES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 331 ~Gd~--e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
.|+. ++ +++++.+- +. ...+++.+|..++.+|+|++|..+++++|++.
T Consensus 121 ~g~~~~~~A~~~l~~al~~d-P~------------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 121 AGQHMTPQTREMIDKALALD-AN------------EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred cCCCCcHHHHHHHHHHHHhC-CC------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4542 22 22322211 10 23466666666666666666666666666664
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=2.1e-06 Score=89.39 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 008796 320 CHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM 395 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~el 395 (553)
..+|+|.+.+..+.+|- +.+|+.....- + ..|.+|+|+|.+..-.|++.-|+++|+-||.--
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~--------~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---- 425 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQP--------G--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---- 425 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCc--------c--hhhhhhhccceeEEeccchHHHHHHHHHHhccC----
Confidence 35789999988888885 88888887644 2 278999999999999999999999998877542
Q ss_pred cChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 396 GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 396 Gdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
-..+.+|++||-+....|+..+|+.++..|-.+
T Consensus 426 ---~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 426 ---AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ---cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 334568999999999999999999998887654
No 60
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.49 E-value=2.2e-06 Score=80.53 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD 437 (553)
..++.+++.+|.++..+|++++|...|++|+.+. .++...+.++.+||.++...|++++|+..+++|+.+-...++
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 3479999999999999999999999999999984 233456779999999999999999999999999987433322
Q ss_pred -hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 438 -IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 438 -~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
....+.++..+|+.+...|+++.|...+..+....+.
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 2233444555555555899999888888777766553
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=5.8e-06 Score=88.90 Aligned_cols=203 Identities=15% Similarity=0.114 Sum_probs=151.9
Q ss_pred HHHHHHHHHhhC--CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 242 LENKVAVELTRS--GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 242 LenLg~~~l~~G--r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
-+||...+..+| +|++|.++...|+.+-|=. +.++.+-|-....-|+++.|++.|.+||. .-..-..
T Consensus 457 a~nl~~l~flqggk~~~~aqqyad~aln~dryn--------~~a~~nkgn~~f~ngd~dka~~~ykeal~---ndasc~e 525 (840)
T KOG2003|consen 457 ANNLCALRFLQGGKDFADAQQYADIALNIDRYN--------AAALTNKGNIAFANGDLDKAAEFYKEALN---NDASCTE 525 (840)
T ss_pred hhhhHHHHHHhcccchhHHHHHHHHHhcccccC--------HHHhhcCCceeeecCcHHHHHHHHHHHHc---CchHHHH
Confidence 467777777764 7899999999999885533 34777888999999999999999999874 3345667
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChH
Q 008796 320 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 399 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~ 399 (553)
++.|+|+++..+|+.+ +||+.+-.+. +-+++-+.+++.++.+|-...++..|.+.|-++..+. -.|
T Consensus 526 alfniglt~e~~~~ld---eald~f~klh------~il~nn~evl~qianiye~led~aqaie~~~q~~sli---p~d-- 591 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLD---EALDCFLKLH------AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI---PND-- 591 (840)
T ss_pred HHHHhcccHHHhcCHH---HHHHHHHHHH------HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC---CCC--
Confidence 8999999999999966 4555544431 2334568999999999999999999999999998775 233
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHH---------------------------HHHHHHHHHHhCC--hHHHHHHHHHHHH
Q 008796 400 LVSQYLTILGNLALALHDTVQAREI---------------------------LRSSLTLAKKLYD--IPTQIWALSVLTA 450 (553)
Q Consensus 400 leA~aL~~LG~i~lalGd~~eA~~~---------------------------l~~AL~LArklgD--~~~qa~aL~~Lg~ 450 (553)
..+|.-||++|-..||-.+|..+ ++.|.....+..- +..-.|- ..++.
T Consensus 592 --p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq-lmias 668 (840)
T KOG2003|consen 592 --PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ-LMIAS 668 (840)
T ss_pred --HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH-HHHHH
Confidence 34677899999999999998876 3444444444322 2233333 35677
Q ss_pred HHHHcCCchHHHHHHHHHHHHH
Q 008796 451 LYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 451 ly~alGd~~~A~e~~e~a~~~~ 472 (553)
.++..|++++|.+.|..-.+++
T Consensus 669 c~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhC
Confidence 8999999999999887665544
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.42 E-value=6.9e-05 Score=80.48 Aligned_cols=208 Identities=11% Similarity=0.017 Sum_probs=123.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHH
Q 008796 245 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 324 (553)
Q Consensus 245 Lg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NL 324 (553)
.+.+...+|++++|.+++.+|.+ ..|+.. .+ .....+.++...|++++|.+.+.+..+...+. ..++.-+
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~---~~~~~~---~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~---~~al~ll 193 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAE---LADNDQ---LP-VEITRVRIQLARNENHAARHGVDKLLEVAPRH---PEVLRLA 193 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCcch---HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Confidence 34555889999999999999974 345521 11 22344889999999999999999887665433 3667777
Q ss_pred HHHHHHhCChHHHHHHHHhhcccccccc-cccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHH
Q 008796 325 AVSYFCIGDAESSSQAIDLIGPVYQMKD-TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 403 (553)
Q Consensus 325 A~vyl~~Gd~e~~~qAL~L~r~lgd~~g-~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~ 403 (553)
+.+|...|++++...-+..+........ ....+ +-.++..+....... +..+.+.+..+-.- ........
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l--~~~a~~~l~~~~~~~----~~~~~l~~~w~~lp---~~~~~~~~ 264 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAML--EQQAWIGLMDQAMAD----QGSEGLKRWWKNQS---RKTRHQVA 264 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHHHHHHHHHh----cCHHHHHHHHHhCC---HHHhCCHH
Confidence 8999999998875444444443311100 00000 001211111111111 12222222211110 00122345
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHH---------HHh--CCh--------------HHHHHHHHHHHHHHHHcCCc
Q 008796 404 YLTILGNLALALHDTVQAREILRSSLTLA---------KKL--YDI--------------PTQIWALSVLTALYQQLGDR 458 (553)
Q Consensus 404 aL~~LG~i~lalGd~~eA~~~l~~AL~LA---------rkl--gD~--------------~~qa~aL~~Lg~ly~alGd~ 458 (553)
+...++..+...|++++|...+++++... -.+ ++. +.-...+..+|+++...|++
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~ 344 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW 344 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 66778889999999999998888777631 000 111 11123567889999999999
Q ss_pred hHHHHHHHHHHHH
Q 008796 459 GNEMENDEYRRKK 471 (553)
Q Consensus 459 ~~A~e~~e~a~~~ 471 (553)
++|.++++...+.
T Consensus 345 ~~A~~~le~al~~ 357 (398)
T PRK10747 345 QEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888775
No 63
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=7.9e-06 Score=88.23 Aligned_cols=194 Identities=14% Similarity=0.020 Sum_probs=146.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 008796 182 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 261 (553)
Q Consensus 182 v~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~ 261 (553)
+-++-.++..+||.+|+++||+. ..+ - +-.+ .+||.=| +.+.+-..|+..
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkL----Np~-----~-----~~aW-TLmGHEy---------------vEmKNt~AAi~s 386 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKL----NPK-----Y-----LSAW-TLMGHEY---------------VEMKNTHAAIES 386 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhc----Ccc-----h-----hHHH-HHhhHHH---------------HHhcccHHHHHH
Confidence 34556678889999999999988 221 1 0011 2245555 888999999999
Q ss_pred HHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----H
Q 008796 262 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----S 337 (553)
Q Consensus 262 l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~ 337 (553)
|++|++++.+.- ++.+.||+.+..++-+.=|+.+|++|...-- .-...+..||.+|...++.++ +
T Consensus 387 YRrAvdi~p~Dy--------RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP---nDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 387 YRRAVDINPRDY--------RAWYGLGQAYEIMKMHFYALYYFQKALELKP---NDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHHHHhcCchhH--------HHHhhhhHHHHHhcchHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999986532 3788999999999999999999999987532 233456778999999998776 5
Q ss_pred HHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh-HHHHHHHHHHHHHHCC
Q 008796 338 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL-VSQYLTILGNLALALH 416 (553)
Q Consensus 338 ~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l-eA~aL~~LG~i~lalG 416 (553)
.+|...- +. +..++..+|.+|-..+++++|..+|.+.++... ..|.... +-.+..-|+.-+...+
T Consensus 456 krai~~~-----------dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~-~eg~~~~~t~ka~~fLA~~f~k~~ 521 (559)
T KOG1155|consen 456 KRAILLG-----------DT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE-LEGEIDDETIKARLFLAEYFKKMK 521 (559)
T ss_pred HHHHhcc-----------cc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHhhc
Confidence 5555431 22 568999999999999999999999999999652 3333222 3344455999999999
Q ss_pred ChHHHHHHHHHHHH
Q 008796 417 DTVQAREILRSSLT 430 (553)
Q Consensus 417 d~~eA~~~l~~AL~ 430 (553)
++++|..++..++.
T Consensus 522 ~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 522 DFDEASYYATLVLK 535 (559)
T ss_pred chHHHHHHHHHHhc
Confidence 99999998777664
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=4.2e-05 Score=79.95 Aligned_cols=202 Identities=17% Similarity=0.080 Sum_probs=141.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
..+|-|+++.|-+.+|.+.++++++-+. .||. ..+|..++.+......|+..|.+.++- ..+....+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dT--------fllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~ 294 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDT--------FLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLL 294 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhH--------HHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhh
Confidence 5567788999999999999999987643 3442 224455556666666666666554432 233444555
Q ss_pred HHHHHHHHhCChHH----HHHHHHh---------------------------hcccccccccccchhHHHHHHHHHHHHH
Q 008796 323 YAAVSYFCIGDAES----SSQAIDL---------------------------IGPVYQMKDTINGVREEASLHFAYGLLL 371 (553)
Q Consensus 323 NLA~vyl~~Gd~e~----~~qAL~L---------------------------~r~lgd~~g~~~~lr~eA~aL~~LG~~~ 371 (553)
.+|.||...++.++ |..+|++ +|++..+ |-+ --.-++|+|++.
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-----speLf~NigLCC 368 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-----SPELFCNIGLCC 368 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-----ChHHHhhHHHHH
Confidence 55666665555443 3333332 1111000 000 124678999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 008796 372 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTAL 451 (553)
Q Consensus 372 ~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~l 451 (553)
+.-+.++-++..+++||..+. +.| .-|.+..+||.|....||+.-|..+++-||+- ......++++|+-+
T Consensus 369 ~yaqQ~D~~L~sf~RAlstat-~~~---~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL 438 (478)
T KOG1129|consen 369 LYAQQIDLVLPSFQRALSTAT-QPG---QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVL 438 (478)
T ss_pred HhhcchhhhHHHHHHHHhhcc-Ccc---hhhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHH
Confidence 999999999999999999984 333 45778999999999999999999999888753 34456789999999
Q ss_pred HHHcCCchHHHHHHHHHHHHH
Q 008796 452 YQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 452 y~alGd~~~A~e~~e~a~~~~ 472 (553)
-...|+..+|...+..+..+.
T Consensus 439 ~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HhhcCchHHHHHHHHHhhhhC
Confidence 999999999999988776654
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.36 E-value=8.7e-05 Score=84.18 Aligned_cols=260 Identities=16% Similarity=0.071 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008796 171 SAVYALVDLMVVILG----RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKV 246 (553)
Q Consensus 171 ~~~~~Lv~l~tv~~~----~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg 246 (553)
+++-..+|++-++.+ +.....++-..++.++++.+++.+..-+..+. ++.+++
T Consensus 429 ~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~-----------------------~if~la 485 (799)
T KOG4162|consen 429 SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL-----------------------VIFYLA 485 (799)
T ss_pred hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch-----------------------HHHHHH
Confidence 444555565555543 45566777788999999997665554333322 355788
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhh----------
Q 008796 247 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM---------- 316 (553)
Q Consensus 247 ~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g---------- 316 (553)
.-+-.+++.+.|.++.++++++.+.. -+.+..++.++..+.+++.+|+..-..|+..+++..+
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~-------~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGD-------SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCc-------cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 88889999999999999999985432 3447888999999999999999999999998887111
Q ss_pred --------HHHHHHHHHHHH----------------------HHhCChHH----HHHHHHhhcccccccc----------
Q 008796 317 --------QAMCHAYAAVSY----------------------FCIGDAES----SSQAIDLIGPVYQMKD---------- 352 (553)
Q Consensus 317 --------~A~aL~NLA~vy----------------------l~~Gd~e~----~~qAL~L~r~lgd~~g---------- 352 (553)
...|-.-|+..- +..++... +..++.++..-....+
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 112222222222 11111111 4444444331111110
Q ss_pred ---cc----------------------------------cchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 008796 353 ---TI----------------------------------NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM 395 (553)
Q Consensus 353 ---~~----------------------------------~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~el 395 (553)
+. ...+.-+..++-.|..+..+|...||+..|-.||.+.
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld---- 714 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD---- 714 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC----
Confidence 00 0001124677888999999999999999999999983
Q ss_pred cChHhHHHHHHHHHHHHHHCCChHHHHH--HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 396 GNLQLVSQYLTILGNLALALHDTVQARE--ILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 396 Gdr~leA~aL~~LG~i~lalGd~~eA~~--~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
.....+...||+++...|+++-|.. ++..|+.+ +-..-++| ..||.+++..||.++|.++|+.+....+
T Consensus 715 ---P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~----dp~n~eaW--~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 715 ---PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL----DPLNHEAW--YYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred ---CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh----CCCCHHHH--HHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 2223466779999999999888887 88888876 33444455 7899999999999999999998877655
No 66
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=4e-05 Score=70.58 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=98.9
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 329 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl 329 (553)
+..++.+.+.+.+. .+...+|+. .....+...++..+...|++++|...|..++....+......+..+||.+++
T Consensus 22 ~~~~~~~~~~~~~~---~l~~~~~~s--~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 22 LQAGDPAKAEAAAE---QLAKDYPSS--PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHCCCHHHHHHHHH---HHHHHCCCC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 35788888765444 344567773 3457788889999999999999999999999988788888999999999999
Q ss_pred HhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 330 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 330 ~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL 388 (553)
..|++++ |+..+..+.+. ...+.++..+|.++...|++++|+..|++||
T Consensus 97 ~~~~~d~---Al~~L~~~~~~-------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 QQGQYDE---ALATLQQIPDE-------AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HcCCHHH---HHHHHHhccCc-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999875 44444443111 1266788899999999999999999999985
No 67
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.32 E-value=0.00018 Score=86.49 Aligned_cols=200 Identities=12% Similarity=-0.049 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
+|-..+..+...|++++|.+.++.. .+.|+.+. . .+.+.|..++...|+++
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M--------~~~Gv~PD--------~-------------vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIM--------RSKNVKPD--------R-------------VVFNALISACGQSGAVD 559 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHH--------HHcCCCCC--------H-------------HHHHHHHHHHHHCCCHH
Confidence 3344444556678888877766543 23344444 1 12244555556666666
Q ss_pred HHHHHHHHHHHHHHH-CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChH
Q 008796 257 EAQEALVQMKNWFIR-FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 335 (553)
Q Consensus 257 eAl~~l~qAL~L~r~-~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e 335 (553)
+|.+.+.++...-.. .|| ...++.+-..+...|++++|.+.|....+. +......+.+.+...|...|+.+
T Consensus 560 eA~~lf~eM~~~~~gi~PD------~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~d 631 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPD------HITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWD 631 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHH
Confidence 666666666543111 233 123344444455566666666666544331 11112234444555555555544
Q ss_pred HHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHC
Q 008796 336 SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 415 (553)
Q Consensus 336 ~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lal 415 (553)
+....+.-+...|-.+ -..+++.+..++.+.|++++|...+.+..+. |- ..-..+++.|...|...
T Consensus 632 eAl~lf~eM~~~Gv~P--------D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-----G~-~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 632 FALSIYDDMKKKGVKP--------DEVFFSALVDVAGHAGDLDKAFEILQDARKQ-----GI-KLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCCHHHHHHHHHHHHhC
Confidence 3111111111111000 1234444445555555555555555543321 11 11122444455555555
Q ss_pred CChHHHHHHHHH
Q 008796 416 HDTVQAREILRS 427 (553)
Q Consensus 416 Gd~~eA~~~l~~ 427 (553)
|+.++|.+.++.
T Consensus 698 G~~eeA~~lf~e 709 (1060)
T PLN03218 698 KNWKKALELYED 709 (1060)
T ss_pred CCHHHHHHHHHH
Confidence 555555544443
No 68
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.7e-05 Score=82.86 Aligned_cols=243 Identities=14% Similarity=0.057 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
+.-+.=-+--...+-.|+.+++.|.++++. .. .+..+.+.+.+++..|.
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el----~~---------------------------~it~~~n~aA~~~e~~~ 272 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALEL----AT---------------------------DITYLNNIAAVYLERGK 272 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhH----hh---------------------------hhHHHHHHHHHHHhccH
Confidence 333333444555666788888888888887 11 22336677777788888
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCCh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~ 334 (553)
+.+.+..-..|++--++.--. ....+.+...+|-.+..+++|+.|..+|.+|+...+.+. ++..+ -+
T Consensus 273 ~~~c~~~c~~a~E~gre~rad-~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~----~ls~l-------k~- 339 (539)
T KOG0548|consen 273 YAECIELCEKAVEVGRELRAD-YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD----LLSKL-------KE- 339 (539)
T ss_pred HHHhhcchHHHHHHhHHHHHH-HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH----HHHHH-------HH-
Confidence 888887777777766553221 122566666788899999999999999999887665511 11111 11
Q ss_pred HHHHHHHHh------hcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHH
Q 008796 335 ESSSQAIDL------IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 408 (553)
Q Consensus 335 e~~~qAL~L------~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~L 408 (553)
.++++.. +++. .|..-..-|.-++..|+|.+|..+|.+|++.. ..-+..+-+.
T Consensus 340 --~Ek~~k~~e~~a~~~pe------------~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-------P~Da~lYsNR 398 (539)
T KOG0548|consen 340 --AEKALKEAERKAYINPE------------KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-------PEDARLYSNR 398 (539)
T ss_pred --HHHHHHHHHHHHhhChh------------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CchhHHHHHH
Confidence 2233222 2322 46666777999999999999999999987763 2334566788
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhHHHHhhcchhh
Q 008796 409 GNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHH 488 (553)
Q Consensus 409 G~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~~~~~A~~~~~h 488 (553)
+-.|+.+|++..|...++.++.+ .-...-++... |.++..+.++++|++.|+.+...- |.-
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL----~p~~~kgy~RK--g~al~~mk~ydkAleay~eale~d-------------p~~ 459 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIEL----DPNFIKAYLRK--GAALRAMKEYDKALEAYQEALELD-------------PSN 459 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc----CchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcC-------------chh
Confidence 99999999999999998888777 22333344333 678888889999999998887654 666
Q ss_pred HHHHhhhcchhhc
Q 008796 489 IELISKVKLEVQQ 501 (553)
Q Consensus 489 ~~l~~~~~~~~~~ 501 (553)
.++++|.+=|+.+
T Consensus 460 ~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 460 AEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777666654
No 69
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.30 E-value=0.00023 Score=85.50 Aligned_cols=200 Identities=12% Similarity=-0.030 Sum_probs=133.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
...++.++...|++++|.+.|.++.+. .-.|| ...++.+-..+...|++++|...|.+..........-..+.
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy 582 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSK-NVKPD------RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 456677778889999999988887653 12355 34677777788889999999999987655322212234566
Q ss_pred HHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhH
Q 008796 322 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 401 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~le 401 (553)
+.+-..|...|+.++..+.++.+.+.+ ...-..+++.+...|.+.|++++|...|.+..+. |-.. -
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~g--------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----Gv~P-D 648 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYN--------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----GVKP-D 648 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC-C
Confidence 777778888888765333333333321 1113468888999999999999999999976432 3211 2
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 008796 402 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 467 (553)
Q Consensus 402 A~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~ 467 (553)
..+++.|...+...|+.++|.+++..... .|-.+. ..+++.|...|...|+.++|.+.|+.
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k----~G~~pd-~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARK----QGIKLG-TVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45788899999999999999998777542 222221 22455555666666666666655543
No 70
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.27 E-value=7.1e-06 Score=76.02 Aligned_cols=95 Identities=11% Similarity=0.021 Sum_probs=70.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
.++|.+....|+|++|++.+.+++.+ .|+ -+.++..+|.++..+|++++|...|.+|+++
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~-----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------------ 87 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMA---QPW-----SWRAHIALAGTWMMLKEYTTAINFYGHALML------------ 87 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCC-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------------
Confidence 35667777777777777777777654 344 2446777777777777777777777766542
Q ss_pred HHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 323 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 323 NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
.|. -+.+++++|.++...|++++|+..|++|+++.
T Consensus 88 ----------------------~p~------------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 ----------------------DAS------------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred ----------------------CCC------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 221 34788999999999999999999999999884
No 71
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=5.8e-05 Score=69.51 Aligned_cols=122 Identities=20% Similarity=0.172 Sum_probs=95.1
Q ss_pred HhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHH
Q 008796 330 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 409 (553)
Q Consensus 330 ~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG 409 (553)
..|+.......++-+...+.. -.-...+.+.+|.+++..|++++|...|++++.-. .+..+...+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPS------SPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----PDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CCHHHHHHHHHHHH
Confidence 346666555544444433211 11246788999999999999999999999998753 45567778899999
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 008796 410 NLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 468 (553)
Q Consensus 410 ~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a 468 (553)
.++...|++++|...++. +.+......+...+|++|...|+.++|...|+.+
T Consensus 93 ~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999999999988888744 5566677778999999999999999999999876
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=2.9e-05 Score=89.29 Aligned_cols=181 Identities=10% Similarity=-0.044 Sum_probs=132.8
Q ss_pred HHHhhCCHHHHH-HHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHH
Q 008796 248 VELTRSGFVEAQ-EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAV 326 (553)
Q Consensus 248 ~~l~~Gr~aeAl-~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~ 326 (553)
+....|+-.+|. +.+.|+-++.++.+. ...+.+-.-+++...++-.-.+.++.+||.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~La~ 94 (694)
T PRK15179 37 ALAEPGESEEAGRELLQQARQVLERHAA----------------------VHKPAAALPELLDYVRRYPHTELFQVLVAR 94 (694)
T ss_pred HhcCcccchhHHHHHHHHHHHHHHHhhh----------------------hcchHhhHHHHHHHHHhccccHHHHHHHHH
Confidence 345567777774 445566666665444 122222233444455555555888999999
Q ss_pred HHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHH
Q 008796 327 SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 406 (553)
Q Consensus 327 vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~ 406 (553)
+....|++++.++.++-.-+. .+ + -+.+..+++.+..++++++||+..++++|... ...+.+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~-~P-----d---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~~~~~~ 158 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQR-FP-----D---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSSAREIL 158 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhh-CC-----C---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCCHHHHH
Confidence 999999999833333322222 11 1 46788999999999999999999999999884 34567899
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 407 ILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 407 ~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
.+|.+...+|++++|.++|+++++ . .+...+++..+|.++...|+.++|...|+.+.+.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---Q---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---c---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999987 2 23455688899999999999999999999885443
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00011 Score=80.17 Aligned_cols=241 Identities=15% Similarity=0.112 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
+.+-+++++|...+|+.-.+..-+++++.. -. .+. ++ +--++.++..+.+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l----~~----~~~--------------~l--------yI~~a~~y~d~~~ 375 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKL----DP----AFN--------------SL--------YIKRAAAYADENQ 375 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhc----Cc----ccc--------------hH--------HHHHHHHHhhhhc
Confidence 677789999999999999999998888777 11 111 11 2345556688899
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCCh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~ 334 (553)
..+-.+.|..|..+--++|| +++..|++..-+++|++|.+-|.+|..+.. .-+++...++....+++..
T Consensus 376 ~~~~~~~F~~A~~ldp~n~d--------vYyHRgQm~flL~q~e~A~aDF~Kai~L~p---e~~~~~iQl~~a~Yr~~k~ 444 (606)
T KOG0547|consen 376 SEKMWKDFNKAEDLDPENPD--------VYYHRGQMRFLLQQYEEAIADFQKAISLDP---ENAYAYIQLCCALYRQHKI 444 (606)
T ss_pred cHHHHHHHHHHHhcCCCCCc--------hhHhHHHHHHHHHHHHHHHHHHHHHhhcCh---hhhHHHHHHHHHHHHHHHH
Confidence 99999999999999988888 566777777777888889999998887643 3456666667766676654
Q ss_pred HHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----cChHhHHHHHHHHHH
Q 008796 335 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM----GNLQLVSQYLTILGN 410 (553)
Q Consensus 335 e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~el----Gdr~leA~aL~~LG~ 410 (553)
+ .++..+.+...+- -. -..+++-.|.+...+++++.|...|..|.++-.++. |--..+..++..+-
T Consensus 445 ~---~~m~~Fee~kkkF---P~---~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q- 514 (606)
T KOG0547|consen 445 A---ESMKTFEEAKKKF---PN---CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ- 514 (606)
T ss_pred H---HHHHHHHHHHHhC---CC---CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-
Confidence 4 4444444432211 01 235667779999999999999999999999965322 22233333333322
Q ss_pred HHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Q 008796 411 LALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 475 (553)
Q Consensus 411 i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L 475 (553)
+. +|..+|.+.+++|+.+ |+.. -.+...||.+-...|+.++|.+.|+....++++.
T Consensus 515 --wk-~d~~~a~~Ll~KA~e~-----Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 515 --WK-EDINQAENLLRKAIEL-----DPKC-EQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred --hh-hhHHHHHHHHHHHHcc-----CchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 22 7888899998888876 3222 2366789999999999999999999988777653
No 74
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.25 E-value=3.7e-05 Score=72.75 Aligned_cols=115 Identities=19% Similarity=0.256 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccch
Q 008796 278 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV 357 (553)
Q Consensus 278 ~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~l 357 (553)
...+.++..+|.++...|++++|..+|.+|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------------ 69 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN------------------------------------------ 69 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc------------------------------------------
Confidence 45677888999999999999999999998776432211
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 435 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl 435 (553)
+.+.+++++|.++...|++++|..++.+++.+...........+.++..+|....+.|+..+|+..+++|+...++.
T Consensus 70 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a 146 (172)
T PRK02603 70 -DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQA 146 (172)
T ss_pred -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHH
Confidence 13456777888888888888888888888877421111112223333333333344445556666666666555443
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.24 E-value=7.2e-05 Score=73.19 Aligned_cols=159 Identities=18% Similarity=0.130 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
-+.+.---+..|+..|+++...... ++.-+... -....++++++...++++++...+ -
T Consensus 15 ~~~~~~~~~~~Y~~~g~~~~v~~~~-------~~~~~~~~------------~~~~~~~~~~~i~~l~~~L~~~P~---~ 72 (198)
T PRK10370 15 TILMVFLCVGSYLLSPKWQAVRAEY-------QRLADPLH------------QFASQQTPEAQLQALQDKIRANPQ---N 72 (198)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHH-------HHHhCccc------------cccCchhHHHHHHHHHHHHHHCCC---C
Confidence 4444455566788899988864332 22111000 001266778888888888776433 2
Q ss_pred HHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL-MRQQD--FQEARNRLAKGLQI 390 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~-~~qGr--~~EA~~~L~eAL~L 390 (553)
+.++.++|.+|...|+++. +.+|+.+.-. .+.++..+|.++ ...|+ +++|...+++++++
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-------------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~ 139 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-------------NAELYAALATVLYYQAGQHMTPQTREMIDKALAL 139 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 3467777888888888776 4444443211 356777778764 56676 48888888888777
Q ss_pred HHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCCh
Q 008796 391 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 438 (553)
Q Consensus 391 ar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~ 438 (553)
- .....++.+||.++...|++++|..+|++++++-..-.++
T Consensus 140 d-------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 140 D-------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred C-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 3 2346677888888888888888888888888776554334
No 76
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=4.1e-05 Score=82.54 Aligned_cols=203 Identities=21% Similarity=0.151 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 008796 231 AGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG--CYSEAAFHYVEAA 308 (553)
Q Consensus 231 a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG--~yeeAl~~f~~AL 308 (553)
+++|.-|-.-+--+.+.-++..|++..|++.+ .+|..-.... .+.+-++|..++.-+| ++..|..+...|+
T Consensus 411 ~s~~~~la~dlei~ka~~~lk~~d~~~aieil----kv~~~kdnk~---~saaa~nl~~l~flqggk~~~~aqqyad~al 483 (840)
T KOG2003|consen 411 ASQHAELAIDLEINKAGELLKNGDIEGAIEIL----KVFEKKDNKT---ASAAANNLCALRFLQGGKDFADAQQYADIAL 483 (840)
T ss_pred HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH----HHHHhccchh---hHHHhhhhHHHHHHhcccchhHHHHHHHHHh
Confidence 45555555555667788888999999888754 5666655532 2334455555544433 7888888888777
Q ss_pred HHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 309 KITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 309 ~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL 388 (553)
.+-+- -+.++.|-|.+-..-|+++. |++-+++..... .+ -..++|++|+.+-.+|+.++|+++|-+--
T Consensus 484 n~dry---n~~a~~nkgn~~f~ngd~dk---a~~~ykeal~nd---as---c~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 484 NIDRY---NAAALTNKGNIAFANGDLDK---AAEFYKEALNND---AS---CTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred ccccc---CHHHhhcCCceeeecCcHHH---HHHHHHHHHcCc---hH---HHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 54332 35667777777777788775 333333321110 01 35789999999999999999999998776
Q ss_pred HHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 389 QIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 389 ~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
.|. .--+++|+.|+.||-.+.++.+|++.+-++..+ ++. --.++.-|+++|-..||..+|..+|
T Consensus 552 ~il-------~nn~evl~qianiye~led~aqaie~~~q~~sl---ip~---dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 552 AIL-------LNNAEVLVQIANIYELLEDPAQAIELLMQANSL---IPN---DPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred HHH-------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc---CCC---CHHHHHHHHHHhhcccchhhhhhhh
Confidence 665 234789999999999999999999999998766 233 3347888999999999998886654
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.23 E-value=4.1e-05 Score=72.40 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCCh
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 438 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~ 438 (553)
..+.+++.+|..+...|++++|..+|++++++.. . . ...+.++..+|.++...|++++|..++++|+.+...
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~-~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-D-P--NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---- 104 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-c-c--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----
Confidence 3789999999999999999999999999999853 1 1 224678999999999999999999999999987432
Q ss_pred HHHHHHHHHHHHHHHHcCC-------chHHHHHHHHHHHHHH
Q 008796 439 PTQIWALSVLTALYQQLGD-------RGNEMENDEYRRKKLD 473 (553)
Q Consensus 439 ~~qa~aL~~Lg~ly~alGd-------~~~A~e~~e~a~~~~d 473 (553)
...++..+|.+|...|+ .++|...++.+....+
T Consensus 105 --~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 105 --QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred --cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 23445566666666555 5555555555554444
No 78
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=9.3e-06 Score=75.27 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHH
Q 008796 364 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIW 443 (553)
Q Consensus 364 L~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~ 443 (553)
++.+|.++...|++++|..+|++++.+. ..-..++..+|.++...|++++|.+.|++|+.+. +.-..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~------p~~~~ 93 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD------ASHPE 93 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCcH
Confidence 5678999999999999999999998773 2346788999999999999999999999999873 34456
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 444 ALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 444 aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
++..+|.++...|++++|...++.+.+..
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 78899999999999999999999887643
No 79
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.17 E-value=0.00045 Score=69.89 Aligned_cols=175 Identities=10% Similarity=0.059 Sum_probs=130.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
...|.-.+..|+|++|++.+++.++. +|+. .....+...+|..+...++|++|...|++.++...+......++.
T Consensus 36 Y~~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s--~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 36 YATAQQKLQDGNWKQAITQLEALDNR---YPFG--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh---CCCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 34555667889999999999998774 5552 345667889999999999999999999999999988888889999
Q ss_pred HHHHHHHHhC---------------ChHHHHHHHHhhcccccccccc----------cchhH-HHHHHHHHHHHHHHcCC
Q 008796 323 YAAVSYFCIG---------------DAESSSQAIDLIGPVYQMKDTI----------NGVRE-EASLHFAYGLLLMRQQD 376 (553)
Q Consensus 323 NLA~vyl~~G---------------d~e~~~qAL~L~r~lgd~~g~~----------~~lr~-eA~aL~~LG~~~~~qGr 376 (553)
.+|.++...+ |......|+..++.+-+.-.++ ..+++ .|.--+.+|..|++.|+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9998875554 1122556666655543332221 11111 24455678999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHH
Q 008796 377 FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILR 426 (553)
Q Consensus 377 ~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~ 426 (553)
|..|...++..++-.- +....-.+|..|+.++..+|..++|.+...
T Consensus 191 y~AA~~r~~~v~~~Yp----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 191 YVAVVNRVEQMLRDYP----DTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred hHHHHHHHHHHHHHCC----CCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999999999988752 224466789999999999999999887643
No 80
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.11 E-value=4.2e-05 Score=65.82 Aligned_cols=104 Identities=17% Similarity=0.125 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
..+++.+|..+..+|++++|...|.+++... -++ .....++..+|.++...|++.+|..+++.++... ++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~ 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPK 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCc
Confidence 3578999999999999999999999998763 122 3346788999999999999999999999998764 33333
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 441 QIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 441 qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
..+++..+|.++...|++++|...++...+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4567899999999999999999998877665
No 81
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.09 E-value=0.00037 Score=79.89 Aligned_cols=192 Identities=11% Similarity=-0.083 Sum_probs=103.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
+.|+.++...|++++|.+.|.++. .+| ...++.+...+...|++++|...|.+-.+.--.+ -..+.+
T Consensus 263 n~Li~~y~k~g~~~~A~~vf~~m~-----~~~------~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p--d~~t~~ 329 (697)
T PLN03081 263 CALIDMYSKCGDIEDARCVFDGMP-----EKT------TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI--DQFTFS 329 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----CCC------hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHH
Confidence 456666777777777777766542 122 2356666677777777777777776543211111 123444
Q ss_pred HHHHHHHHhCChHHHH--------------------------------HHHHhhcccccccccccchhHHHHHHHHHHHH
Q 008796 323 YAAVSYFCIGDAESSS--------------------------------QAIDLIGPVYQMKDTINGVREEASLHFAYGLL 370 (553)
Q Consensus 323 NLA~vyl~~Gd~e~~~--------------------------------qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~ 370 (553)
.+...|...|+.+... .|..++.....+ -..+|+.+...
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---------d~~t~n~lI~~ 400 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---------NLISWNALIAG 400 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC---------CeeeHHHHHHH
Confidence 4445555555544322 222233222100 12456666666
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 008796 371 LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 450 (553)
Q Consensus 371 ~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ 450 (553)
|...|+.++|.+.|.+..+. |- .--..+++.+-..+...|+.++|.++++....- .|-.+ ....++.+.+
T Consensus 401 y~~~G~~~~A~~lf~~M~~~-----g~-~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~---~g~~p-~~~~y~~li~ 470 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAE-----GV-APNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN---HRIKP-RAMHYACMIE 470 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHh-----CC-CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh---cCCCC-CccchHhHHH
Confidence 66677777777666664322 22 112334555666666677776666666554321 12211 2235666777
Q ss_pred HHHHcCCchHHHHHHH
Q 008796 451 LYQQLGDRGNEMENDE 466 (553)
Q Consensus 451 ly~alGd~~~A~e~~e 466 (553)
++...|+.++|.+.++
T Consensus 471 ~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 471 LLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHhcCCHHHHHHHHH
Confidence 7777888777777654
No 82
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=1.2e-05 Score=62.99 Aligned_cols=95 Identities=22% Similarity=0.179 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHH
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 442 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa 442 (553)
+++.+|..+..+|++++|...+++++++.. . + ..++..+|.++...|++++|.+++++++.+....+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~--~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 68 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-D--N----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------ 68 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-c--c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------
Confidence 578899999999999999999999988752 1 1 16788999999999999999999999988753332
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 443 WALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 443 ~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
.+...++.++...|++++|...++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 5678899999999999999988876654
No 83
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.09 E-value=0.00036 Score=79.97 Aligned_cols=238 Identities=10% Similarity=-0.059 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
+|-..+..+...|++++|.+.++... +.|+.+. . .+...+..++...|+++
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~--------~~g~~pd--------~-------------~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMR--------DSGVSID--------Q-------------FTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH--------HcCCCCC--------H-------------HHHHHHHHHHHhccchH
Confidence 45555556667788888877776543 3455544 1 12344455556666666
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 336 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~ 336 (553)
+|.+.+..+++.-- .|| ..+.+.+...+...|++++|...|.+.. .+ -..+.+.+...|...|+.++
T Consensus 343 ~a~~i~~~m~~~g~-~~d------~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~--d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 343 HAKQAHAGLIRTGF-PLD------IVANTALVDLYSKWGRMEDARNVFDRMP----RK--NLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHHHHHHHHHhCC-CCC------eeehHHHHHHHHHCCCHHHHHHHHHhCC----CC--CeeeHHHHHHHHHHcCCHHH
Confidence 66666666554311 122 1244555555566666666666666322 11 12345556666666666443
Q ss_pred HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC
Q 008796 337 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 416 (553)
Q Consensus 337 ~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG 416 (553)
..+.++-....|-.+ -..++..+-.++.+.|..++|++.|.+..+.. |- .-....++.|..++...|
T Consensus 410 A~~lf~~M~~~g~~P--------d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~-~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 410 AVEMFERMIAEGVAP--------NHVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RI-KPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHHHHhCCCC--------CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CC-CCCccchHhHHHHHHhcC
Confidence 222221111111111 12334444455555555555555555443321 11 111123444445555555
Q ss_pred ChHHHHHHHHHH------------HHHHHHhCC--------------hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 417 DTVQAREILRSS------------LTLAKKLYD--------------IPTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 417 d~~eA~~~l~~A------------L~LArklgD--------------~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
+.++|.+.+++. +..++..|+ .+....++..|..+|...|+.++|.+.++.-.
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 555554443321 111111111 11123467788888999999888888776543
No 84
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.04 E-value=1.9e-05 Score=63.01 Aligned_cols=65 Identities=23% Similarity=0.307 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH-DTVQAREILRSSLTL 431 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG-d~~eA~~~l~~AL~L 431 (553)
.|.+++.+|..++..|+|++|+.+|.+|+++. ...+.++.++|.++..+| ++.+|+..+++|+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999984 334669999999999999 799999999999976
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.03 E-value=5.6e-05 Score=76.68 Aligned_cols=153 Identities=17% Similarity=0.123 Sum_probs=97.7
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHH
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 323 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~N 323 (553)
++...+...|+-+.+.....++..-.-..+. ++...|......|+|.+|..+|++|++..
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~--------ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------------ 130 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDRE--------LLAAQGKNQIRNGNFGEAVSVLRKAARLA------------ 130 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccHH--------HHHHHHHHHHHhcchHHHHHHHHHHhccC------------
Confidence 4455556666666666665554433322222 33347777777777777777777665421
Q ss_pred HHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHH
Q 008796 324 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 403 (553)
Q Consensus 324 LA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~ 403 (553)
|. .+.+++.+|.++.+.|++++|+..|.+|+++. ..+..
T Consensus 131 ----------------------p~------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-------~~~p~ 169 (257)
T COG5010 131 ----------------------PT------------DWEAWNLLGAALDQLGRFDEARRAYRQALELA-------PNEPS 169 (257)
T ss_pred ----------------------CC------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-------cCCch
Confidence 11 34567777888888888888888888888885 22345
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHH
Q 008796 404 YLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 463 (553)
Q Consensus 404 aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e 463 (553)
+.+|||..+.-.||.+.|+.++.+|-... ..-..+..+|+.+-...|+++.|.+
T Consensus 170 ~~nNlgms~~L~gd~~~A~~lll~a~l~~------~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLLLPAYLSP------AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHhCC------CCchHHHHHHHHHHhhcCChHHHHh
Confidence 67788888888888888877777764332 1122355677777777888777755
No 86
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.0011 Score=69.53 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=169.7
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--hhhHHHHHHHHHH
Q 008796 249 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAMCHAYAAV 326 (553)
Q Consensus 249 ~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d--~~g~A~aL~NLA~ 326 (553)
.+.....++|++.|-.+++ ..|.. --+|--||....+.|..+.|.+..+ +|-..-| -.-...++..||.
T Consensus 45 fLLs~Q~dKAvdlF~e~l~---~d~~t-----~e~~ltLGnLfRsRGEvDRAIRiHQ-~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQ---EDPET-----FEAHLTLGNLFRSRGEVDRAIRIHQ-TLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHhhcCcchHHHHHHHHHh---cCchh-----hHHHHHHHHHHHhcchHHHHHHHHH-HHhcCCCCchHHHHHHHHHHHH
Confidence 3667789999999988777 33332 2367889999999999999999876 3333333 2247788999999
Q ss_pred HHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHH
Q 008796 327 SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 406 (553)
Q Consensus 327 vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~ 406 (553)
=|...|=+|. |-+++..+-|- +.. .-.++..+-.+|....+.++|.+..++-+++.. .-+....|+..-
T Consensus 116 Dym~aGl~DR---AE~~f~~L~de----~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--q~~~~eIAqfyC 184 (389)
T COG2956 116 DYMAAGLLDR---AEDIFNQLVDE----GEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGG--QTYRVEIAQFYC 184 (389)
T ss_pred HHHHhhhhhH---HHHHHHHHhcc----hhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--ccchhHHHHHHH
Confidence 9999887664 44444443221 111 346889999999999999999999998888852 445578899999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH----HHHHHHhhHHHHh
Q 008796 407 ILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR----KKLDELQKRLADA 482 (553)
Q Consensus 407 ~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~----~~~d~L~~~~~~A 482 (553)
.|+..+....+.+.|+..+.+|++...+- +.+...||+++...|++++|.+.++... .+.-++......|
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~c------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKC------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccc------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 99999999999999999999999875544 4577899999999999999999987765 4566677777778
Q ss_pred hc-chhhHHHHhhhcchhhcc
Q 008796 483 YS-SIHHIELISKVKLEVQQF 502 (553)
Q Consensus 483 ~~-~~~h~~l~~~~~~~~~~~ 502 (553)
|. ..--++.+.|.+-.+...
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHcc
Confidence 73 333334455655444333
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0003 Score=75.48 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=127.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHH
Q 008796 247 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAV 326 (553)
Q Consensus 247 ~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~ 326 (553)
++.+..-+|..|+.+.+.++.+-.+.- .++.+=|.....+++.++|.-+|+.|..+.-. .-.+...|--
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~--------~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---rL~~Y~GL~h 376 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNH--------EALILKGRLLIALERHTQAVIAFRTAQMLAPY---RLEIYRGLFH 376 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccc--------hHHHhccHHHHhccchHHHHHHHHHHHhcchh---hHHHHHHHHH
Confidence 444667788888888887777644322 24556788899999999999999988876532 2234455556
Q ss_pred HHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHH-HHHHHcCC-HHHHHHHHHHHHHHHHHhccChHhHHHH
Q 008796 327 SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYG-LLLMRQQD-FQEARNRLAKGLQIAHNHMGNLQLVSQY 404 (553)
Q Consensus 327 vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG-~~~~~qGr-~~EA~~~L~eAL~Lar~elGdr~leA~a 404 (553)
+|+..|... +|+.+.+.+++.. +. -|.++-.+| .|++..-. -++|+.+++++|++- .+---+
T Consensus 377 sYLA~~~~k---EA~~~An~~~~~~---~~---sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-------P~Y~~A 440 (564)
T KOG1174|consen 377 SYLAQKRFK---EANALANWTIRLF---QN---SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-------PIYTPA 440 (564)
T ss_pred HHHhhchHH---HHHHHHHHHHHHh---hc---chhhhhhhcceeeccCchhHHHHHHHHHhhhccC-------CccHHH
Confidence 777777754 4444444443322 11 345555665 55555544 567888888888772 222235
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 405 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 405 L~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
-+.+++.+..-|.++-+...++.+|...- | +.-++.||++..+...+++|+++|..+.+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~---D----~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFP---D----VNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhcc---c----cHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66788888888888888888888886532 2 23456788888888888888888877765
No 88
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=98.01 E-value=9.9e-05 Score=63.78 Aligned_cols=83 Identities=24% Similarity=0.232 Sum_probs=74.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhccChH---hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 008796 370 LLMRQQDFQEARNRLAKGLQIAHNHMGNLQ---LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALS 446 (553)
Q Consensus 370 ~~~~qGr~~EA~~~L~eAL~Lar~elGdr~---leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~ 446 (553)
-..+.|+|.+|.+.+.+..+.+. ..++.. ..+.++.++|.++...|++++|...+++|+.++++.+|..+...++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~-~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAK-QSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 35678999999999999999986 455434 67889999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008796 447 VLTALYQ 453 (553)
Q Consensus 447 ~Lg~ly~ 453 (553)
.+..+..
T Consensus 86 ~~~~l~~ 92 (94)
T PF12862_consen 86 WLANLLK 92 (94)
T ss_pred HHHHHhh
Confidence 9987764
No 89
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00011 Score=78.66 Aligned_cols=178 Identities=14% Similarity=0.070 Sum_probs=114.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh--hHHHHH
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCH 321 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~--g~A~aL 321 (553)
..+.|....|++++|++....-+.+ .+. -+.++.+.|.+..+.++.+.|..||++||++..+.. +.+...
T Consensus 174 lka~cl~~~~~~~~a~~ea~~ilkl---d~~-----n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 174 LKAECLAFLGDYDEAQSEAIDILKL---DAT-----NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred hhhhhhhhcccchhHHHHHHHHHhc---ccc-----hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 3567778899999998876665555 333 244778899999999999999999999998755421 111110
Q ss_pred HHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhH
Q 008796 322 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 401 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~le 401 (553)
. .+...+-.-|.-.+..|+|.+|-++|.+||.|. -.+.--.
T Consensus 246 ~------------------------------------k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id---P~n~~~n 286 (486)
T KOG0550|consen 246 P------------------------------------KKLEVKKERGNDAFKNGNYRKAYECYTEALNID---PSNKKTN 286 (486)
T ss_pred H------------------------------------HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC---ccccchh
Confidence 0 023344445555666666777777777776664 1244555
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 402 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 402 A~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
|..+.+.+.+...+|+.++|+.-++.|+.| ...=.+++..-|..|..+++.+.|.+.++.+.....+
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 666666666677777777766666666655 2233455566666666666666666666666554443
No 90
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.96 E-value=0.001 Score=65.13 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
...+...|...+..|+|.+|++.|++...-+-..| ....+...+|..+...|+|++|...|..=++...+.....
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 34567888999999999999999998877644333 3567888999999999999999999999998888877778
Q ss_pred HHHHHHHHHHHHhC------ChHH--HHHHHHhhcccccccccc----------cch-hHHHHHHHHHHHHHHHcCCHHH
Q 008796 319 MCHAYAAVSYFCIG------DAES--SSQAIDLIGPVYQMKDTI----------NGV-REEASLHFAYGLLLMRQQDFQE 379 (553)
Q Consensus 319 ~aL~NLA~vyl~~G------d~e~--~~qAL~L~r~lgd~~g~~----------~~l-r~eA~aL~~LG~~~~~qGr~~E 379 (553)
.++..+|.++.... +.+. ..+|+..++.+.+.-.++ ..+ ...|.--+.+|..|++.|.|..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 88888888887654 2232 777777766554432222 111 1135666778999999999999
Q ss_pred HHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHH
Q 008796 380 ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 422 (553)
Q Consensus 380 A~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~ 422 (553)
|...++..++-.- +....-.++..|+..+..+|....|.
T Consensus 160 A~~r~~~v~~~yp----~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIENYP----DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHST----TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHCC----CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999888752 33445569999999999999988544
No 91
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.92 E-value=0.00031 Score=63.96 Aligned_cols=101 Identities=15% Similarity=-0.002 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 441 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~q 441 (553)
.++|..|.++...|+.++|..+|++|+..- -.|. ....++..+|.++..+|++++|..++++++. +.++...-
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~~~--~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG--LSGA--DRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDDELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCch--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcccc
Confidence 468999999999999999999999998752 2232 3346889999999999999999999999874 44553334
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 442 IWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 442 a~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
......++.+....|++++|.+.+-...
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444567778899999999998775544
No 92
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.91 E-value=0.00056 Score=78.86 Aligned_cols=192 Identities=17% Similarity=0.107 Sum_probs=139.0
Q ss_pred HHhhCCHHHHHHHHHHHHH----------------------HHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 249 ELTRSGFVEAQEALVQMKN----------------------WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVE 306 (553)
Q Consensus 249 ~l~~Gr~aeAl~~l~qAL~----------------------L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~ 306 (553)
.+.-..++.|+..+..... +|+ .|+-.......++..+|+++...+...+++.||.
T Consensus 326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~-~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l- 403 (895)
T KOG2076|consen 326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE-VGKELSYDLRVIRLMICLVHLKERELLEALLHFL- 403 (895)
T ss_pred HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc-CCCCCCccchhHhHhhhhhcccccchHHHHHHHH-
Confidence 3555667777777777666 333 3443344455579999999999999999999998
Q ss_pred HHHHccc--hhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008796 307 AAKITES--KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRL 384 (553)
Q Consensus 307 AL~l~~d--~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L 384 (553)
.-.+ .....-.+.+++..|...|++. .|++++.++-+.. ..+-+.+|..+|.+++.+|+|++|..+|
T Consensus 404 ---~~~n~~~~d~~dL~~d~a~al~~~~~~~---~Al~~l~~i~~~~-----~~~~~~vw~~~a~c~~~l~e~e~A~e~y 472 (895)
T KOG2076|consen 404 ---VEDNVWVSDDVDLYLDLADALTNIGKYK---EALRLLSPITNRE-----GYQNAFVWYKLARCYMELGEYEEAIEFY 472 (895)
T ss_pred ---HHhcCChhhhHHHHHHHHHHHHhcccHH---HHHHHHHHHhcCc-----cccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 3344 5566777899999999998866 5777777764443 1224789999999999999999999999
Q ss_pred HHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHH---HHHHHhCChHHHHHHHHHHHHHHHHcCCchH
Q 008796 385 AKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL---TLAKKLYDIPTQIWALSVLTALYQQLGDRGN 460 (553)
Q Consensus 385 ~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL---~LArklgD~~~qa~aL~~Lg~ly~alGd~~~ 460 (553)
.++|.+.- ..- .+...|+.++..+|++++|.+.+++=. ....+.....-+...+....+++...|+.++
T Consensus 473 ~kvl~~~p-~~~------D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 473 EKVLILAP-DNL------DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHhcCC-Cch------hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999962 233 478899999999999998888877722 0001111123344455666778888888766
No 93
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.91 E-value=0.0029 Score=74.48 Aligned_cols=237 Identities=14% Similarity=-0.004 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Q 008796 191 FKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFI 270 (553)
Q Consensus 191 ~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r 270 (553)
.++-....++||...+..+.+.+..+. . .+. | ..+......+...+|+++++++.|+....-..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~--~-----~~~-----~----~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPE--A-----QAD-----Y----QRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCc--c-----chH-----H----HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 355566888999997776666554343 0 111 1 22334556667889999999999988777666
Q ss_pred HCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch---hhHHHHHHHHHHHHHHhCChHHHHHHHHhhccc
Q 008796 271 RFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---SMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPV 347 (553)
Q Consensus 271 ~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~---~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~l 347 (553)
..|+ .+..-.|.++.+++..++|+..|.+++...++. ........-|-..|+..|++++..+-++-+...
T Consensus 324 ~~P~-------y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 324 KMPD-------YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred CCCH-------HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 6676 266778999999999999999999887755432 112222355667888888888733333332221
Q ss_pred -------ccccc-cccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChH
Q 008796 348 -------YQMKD-TINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTV 419 (553)
Q Consensus 348 -------gd~~g-~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~ 419 (553)
...++ ...+- --.+...++.++...|++.+|.+.+++.+..+ =||. ..+..+|.++...|.+.
T Consensus 397 ~p~~~~~~~~~~~~pn~d--~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~----~l~~~~A~v~~~Rg~p~ 467 (822)
T PRK14574 397 TPYQVGVYGLPGKEPNDD--WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA---PANQ----NLRIALASIYLARDLPR 467 (822)
T ss_pred CCcEEeccCCCCCCCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHhcCCHH
Confidence 00000 00111 23666778888999999999999999997775 4663 35668999999999999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 420 QAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 420 eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
+|+..++.++.+. +....+...++.++.++|+..+|....
T Consensus 468 ~A~~~~k~a~~l~------P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 468 KAEQELKAVESLA------PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHHHhhhC------CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999888772 334556778888999999888876533
No 94
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.89 E-value=0.00061 Score=79.98 Aligned_cols=208 Identities=13% Similarity=-0.042 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
.....+.+....|++++|+..+.++++..-..+- .++ .+..++...|++++|..++++++ .........
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~-------av~-dll~l~~~~G~~~~A~~~~eka~---~p~n~~~~~ 104 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG-------QVD-DWLQIAGWAGRDQEVIDVYERYQ---SSMNISSRG 104 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh-------hHH-HHHHHHHHcCCcHHHHHHHHHhc---cCCCCCHHH
Confidence 3456677789999999999999999877544321 122 45555556799999999999887 334567788
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh
Q 008796 321 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 400 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l 400 (553)
+..+|.+|...|+++. |+++++++.... . +...++..++.++...|++++|+..+.++++..- . +
T Consensus 105 llalA~ly~~~gdyd~---Aiely~kaL~~d----P--~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~--~--- 169 (822)
T PRK14574 105 LASAARAYRNEKRWDQ---ALALWQSSLKKD----P--TNPDLISGMIMTQADAGRGGVVLKQATELAERDP-T--V--- 169 (822)
T ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHhhC----C--CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-c--h---
Confidence 8889999999999884 444444432221 1 0246677889999999999999999999988741 1 1
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhHHH
Q 008796 401 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLA 480 (553)
Q Consensus 401 eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~~~~ 480 (553)
.....++.++...++..+|+..++++++.. +....++..+..+....|-...|.+....+-..+......+.
T Consensus 170 --~~~l~layL~~~~~~~~~AL~~~ekll~~~------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 170 --QNYMTLSYLNRATDRNYDALQASSEAVRLA------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred --HHHHHHHHHHHhcchHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 112345666666778877999999888773 333345566777888889999999888887766665555553
Q ss_pred Hh
Q 008796 481 DA 482 (553)
Q Consensus 481 ~A 482 (553)
+.
T Consensus 242 ~~ 243 (822)
T PRK14574 242 ER 243 (822)
T ss_pred HH
Confidence 33
No 95
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0018 Score=72.09 Aligned_cols=180 Identities=19% Similarity=0.132 Sum_probs=122.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
...+.|+...++.++|++.+. .+.+.++. ++.+.++++..+|+|++|...|+.=++-..+...+-.-.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~----~~~~~~~~-------ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK----GLDRLDDK-------LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh----cccccchH-------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 688999999999999999987 55555542 5667888889999999999999854443322222222222
Q ss_pred HHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hccChH-
Q 008796 323 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN--HMGNLQ- 399 (553)
Q Consensus 323 NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~--elGdr~- 399 (553)
.++.+-...++ . +.....+- . + --.-+||.+.++...|+|++|.+.|+.|++++++ +.+|.-
T Consensus 152 l~a~~a~l~~~---~---~q~v~~v~--e----~---syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 152 LLAVAAALQVQ---L---LQSVPEVP--E----D---SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNE 216 (652)
T ss_pred HHHHHHhhhHH---H---HHhccCCC--c----c---hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccch
Confidence 22222211111 1 11122210 0 0 2246799999999999999999999999999875 233322
Q ss_pred -----hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 008796 400 -----LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 450 (553)
Q Consensus 400 -----leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ 450 (553)
..+-+...|+.|+..+|+..+|...|..- +.+...|-+..+.+-++|-.
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~--i~~~~~D~~~~Av~~NNLva 270 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI--IKRNPADEPSLAVAVNNLVA 270 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH--HHhcCCCchHHHHHhcchhh
Confidence 34667888999999999999999987653 45667777777777777644
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00041 Score=76.80 Aligned_cols=207 Identities=14% Similarity=0.064 Sum_probs=153.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHH
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 323 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~N 323 (553)
..|+..+.-|...+|.=.|+.|+ .+.|. -+.+...||....-.+.=..|..-+++|+++--+ =-.++.+
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAV---kqdP~-----haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~---NleaLma 358 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAV---KQDPQ-----HAEAWQKLGITQAENENEQNAISALRRCLELDPT---NLEALMA 358 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHH---hhChH-----HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc---cHHHHHH
Confidence 45677789999999999999887 45777 3568899999999999999999999999876432 2345667
Q ss_pred HHHHHHHhCChHHHHHHHHh-------------hccccccc--ccc-------------------cchhHHHHHHHHHHH
Q 008796 324 AAVSYFCIGDAESSSQAIDL-------------IGPVYQMK--DTI-------------------NGVREEASLHFAYGL 369 (553)
Q Consensus 324 LA~vyl~~Gd~e~~~qAL~L-------------~r~lgd~~--g~~-------------------~~lr~eA~aL~~LG~ 369 (553)
||+.|...|.--+.-..|+- ..+-++.. ++. .+.-.-+.+...||.
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 77777776653321111111 00000000 000 000012577889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008796 370 LLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLT 449 (553)
Q Consensus 370 ~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg 449 (553)
+|...|+|+.|.++|+.||..- =.| ....|.||-+.....+..+|+..|++||+| .++=+++..+||
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~---Pnd----~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------qP~yVR~RyNlg 505 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVK---PND----YLLWNRLGATLANGNRSEEAISAYNRALQL------QPGYVRVRYNLG 505 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcC---Cch----HHHHHHhhHHhcCCcccHHHHHHHHHHHhc------CCCeeeeehhhh
Confidence 9999999999999999999872 222 346789999999888999999999999998 577778889999
Q ss_pred HHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 450 ALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 450 ~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
-.+..+|.+.+|..++-.+..+-..
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999888877653
No 97
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.82 E-value=0.00014 Score=64.94 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+.+.+|..+...|++++|.+.+++++.+. -. ...++..+|.++...|++++|..++++++.+. +
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p 82 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD---PY----NSRYWLGLAACCQMLKEYEEAIDAYALAAALD------P 82 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---CC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C
Confidence 45778999999999999999999999988763 12 34678899999999999999999999998863 2
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
.-......+|.+|...|++++|...++.+.+..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 224456789999999999999999998887764
No 98
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.00037 Score=59.85 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccc
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 356 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~ 356 (553)
+.+...+|......|++++|..+|.+++....+......+..++|.++...|+++. +..++... |. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~-------~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PK-------SP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CC-------CC
Confidence 34678899999999999999999999998776655557788999999999999886 33333321 11 01
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 357 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
....+++.+|.++...|++++|..++.++++..
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 74 --KAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred --cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 135678999999999999999999999999885
No 99
>PLN03077 Protein ECB2; Provisional
Probab=97.79 E-value=0.0054 Score=72.05 Aligned_cols=125 Identities=11% Similarity=-0.043 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh-----
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS----- 315 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~----- 315 (553)
+.+.|+..+...|++++|.+.+.++. .||. ..++.+...+...|++++|...|.+-.+.--.+.
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRME-----TKDA------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCe------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 34666777777788887777776653 2331 2455666666677777777777765432110010
Q ss_pred ----------------------------hHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHH
Q 008796 316 ----------------------------MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAY 367 (553)
Q Consensus 316 ----------------------------g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~L 367 (553)
.-..+.+.|-..|...|+.+ .|.+++.....+ + ..+|+.+
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~---~A~~vf~~m~~~-----d----~vs~~~m 461 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID---KALEVFHNIPEK-----D----VISWTSI 461 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH---HHHHHHHhCCCC-----C----eeeHHHH
Confidence 11234455666677766655 444555544211 1 2467888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 008796 368 GLLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 368 G~~~~~qGr~~EA~~~L~eAL 388 (553)
...+...|++++|...|++.+
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 888889999999999998875
No 100
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.77 E-value=0.00071 Score=61.63 Aligned_cols=98 Identities=13% Similarity=0.030 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
++.+++.++-..|+.++|+.+|++|++.- ..+ .....+...+|..+..+|++++|+..+++++..+.+.......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~~---~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l 77 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG--LSG---ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL 77 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH
Confidence 45788899999999999999999998842 222 2235577789999999999999999999998877665555555
Q ss_pred HHHHHHHHHHhCChHH-HHHHHHh
Q 008796 321 HAYAAVSYFCIGDAES-SSQAIDL 343 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~-~~qAL~L 343 (553)
...+|++....|++++ ++..|..
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5667888888888876 4444443
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.00024 Score=72.18 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
+|.-+|......|+|.+|+..+.+|.++- |+ .+.+++.+|-.+...|++++|..-|.+|+++... ....
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~---p~-----d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~---~p~~ 170 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLA---PT-----DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN---EPSI 170 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccC---CC-----ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---Cchh
Confidence 44558999999999999999999998873 33 3568999999999999999999999999998753 5678
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008796 321 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLA 385 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~ 385 (553)
.+|+|+.|...||++.. -.++.+.+-.+ ..-..+..|++++.-.+|++++|++.-.
T Consensus 171 ~nNlgms~~L~gd~~~A---~~lll~a~l~~------~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 171 ANNLGMSLLLRGDLEDA---ETLLLPAYLSP------AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhhHHHHHHHcCCHHHH---HHHHHHHHhCC------CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 89999999999997752 23333332111 0123577899999999999999986543
No 102
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0015 Score=71.61 Aligned_cols=169 Identities=16% Similarity=0.059 Sum_probs=125.0
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
.+-|.+++..++|++|+..|..|+.|- |. -+..+.-++-...++++++++...|+.+.+.+-. -.-+.+
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~---pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~---~~Evy~ 466 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLD---PE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN---CPEVYN 466 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcC---hh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CchHHH
Confidence 788999999999999999999999883 33 2445666777777888999999999998887654 234556
Q ss_pred HHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh
Q 008796 323 YAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 398 (553)
Q Consensus 323 NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr 398 (553)
-.|.+...+++++. |..|.+|-.......-+...+.++|..+ ....+++++|...+++|+++--+
T Consensus 467 ~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~------~qwk~d~~~a~~Ll~KA~e~Dpk----- 535 (606)
T KOG0547|consen 467 LFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV------LQWKEDINQAENLLRKAIELDPK----- 535 (606)
T ss_pred HHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh------hchhhhHHHHHHHHHHHHccCch-----
Confidence 67788888888876 8888887544211110111222233322 22568999999999999887421
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 435 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl 435 (553)
-. ++.-.||.+-+.+|+.++|+++++.|..+||.-
T Consensus 536 ce--~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 536 CE--QAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 22 467799999999999999999999999998764
No 103
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00033 Score=54.72 Aligned_cols=92 Identities=22% Similarity=0.300 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchh
Q 008796 283 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVR 358 (553)
Q Consensus 283 ~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr 358 (553)
++..+|..+...|++++|...|.++++...+.. .+..++|.+|...|+++. +.+++.+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------------ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---DAYYNLAAAYYKLGKYEEALEDYEKALELDPD------------ 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------------
Confidence 467788999999999999999999988765433 678899999999988776 3343332211
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
...+++.+|.++...|++++|..++.+++++
T Consensus 67 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 67 -NAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred -chhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 1267899999999999999999999998865
No 104
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.75 E-value=0.008 Score=69.80 Aligned_cols=260 Identities=17% Similarity=0.054 Sum_probs=178.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q 008796 179 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 258 (553)
Q Consensus 179 l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeA 258 (553)
+..++.......+++|...+..+-.. +...++... .++ .+.+.---+.+.+.+|++++|
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~----l~~~~~~~~---~~l--------------~ae~~aL~a~val~~~~~e~a 477 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHF----LKAPMHSRQ---GDL--------------LAEFQALRAQVALNRGDPEEA 477 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHH----hCcCcccch---hhH--------------HHHHHHHHHHHHHhcCCHHHH
Confidence 44566777788899998888877766 333222222 121 333333445667889999999
Q ss_pred HHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHhCChH
Q 008796 259 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAE 335 (553)
Q Consensus 259 l~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~A~aL~NLA~vyl~~Gd~e 335 (553)
.+..+.++...-..- ......+...+|.+.+-.|+|++|..+..+|.+.++. ..-.+.+..-.+.+...+|+..
T Consensus 478 ~~lar~al~~L~~~~---~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 478 EDLARLALVQLPEAA---YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred HHHHHHHHHhccccc---chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999987654332 3445778889999999999999999999999887655 4567888899999999999422
Q ss_pred --HHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHH
Q 008796 336 --SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 413 (553)
Q Consensus 336 --~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~l 413 (553)
+...+-.+++...-.. ... -...+...+.++...-+++.|..-.+.++++.....-......-++..|+.++.
T Consensus 555 ~a~~~~~~~~~~~q~l~q---~~~--~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~ 629 (894)
T COG2909 555 RAEQEKAFNLIREQHLEQ---KPR--HEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF 629 (894)
T ss_pred HHHHHHHHHHHHHHHhhh---ccc--chhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH
Confidence 2333333333221000 010 012233333444444458899999999998876444445555555569999999
Q ss_pred HCCChHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 008796 414 ALHDTVQAREILRSSLTLAKKL-YDIPTQIWALSVLTALYQQLGDRGNEMENDEY 467 (553)
Q Consensus 414 alGd~~eA~~~l~~AL~LArkl-gD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~ 467 (553)
..||+++|...+.+-..+.... ++....+.+...-...-...||+..|.+....
T Consensus 630 ~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 630 LRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 9999999999999988887776 56667777777766777788888888765544
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.0017 Score=72.11 Aligned_cols=250 Identities=18% Similarity=0.148 Sum_probs=154.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH---HHHHHHcCCCCCcccccchhhHHHHHHHHHHHH-----HHHHHHHHHHHHhh
Q 008796 181 VVILGRPKGLFKECMQRIQSGMQTI---QDALLKLGITDGVREVDLQHSAIWMAGVYLMLL-----MQFLENKVAVELTR 252 (553)
Q Consensus 181 tv~~~~~~G~~dka~ky~ekAL~~~---~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~-----a~lLenLg~~~l~~ 252 (553)
-+.-.+..|.+.+|.-.+|.|...= -+...+||+... |.+.+...|. ..-.-|+ ..+|..|+..|...
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qa--ENE~E~~ai~--AL~rcl~LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQA--ENENEQNAIS--ALRRCLELDPTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhh--hccchHHHHH--HHHHHHhcCCccHHHHHHHHHHHhhh
Confidence 3455677888888888888887530 122567777665 3333223221 1110011 24677888888888
Q ss_pred CCHHHHHHHHHHHHHHHHHCCchhhhhHHHH-HHHH----HHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Q 008796 253 SGFVEAQEALVQMKNWFIRFPTILQACESMI-EMLR----GQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS 327 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~-~~lL----G~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~v 327 (553)
|.-.+|++.+.. |.+..|--.. .... -... +-. ..-..+.+-.+.|..|...... .--.-+...||++
T Consensus 367 g~q~~Al~~L~~---Wi~~~p~y~~--l~~a~~~~~~~~~~s~-~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 367 GLQNQALKMLDK---WIRNKPKYVH--LVSAGENEDFENTKSF-LDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVL 439 (579)
T ss_pred hhHHHHHHHHHH---HHHhCccchh--ccccCccccccCCcCC-CCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHH
Confidence 888888877764 3333322000 0000 0000 000 0011233445666666655443 2345677889999
Q ss_pred HHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHH
Q 008796 328 YFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 403 (553)
Q Consensus 328 yl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~ 403 (553)
|...|+++. ++.|| ..+|. -...|+.||-..-.-.+..||...|++||+|- .+-..
T Consensus 440 y~ls~efdraiDcf~~AL-~v~Pn------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-------P~yVR 499 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAAL-QVKPN------------DYLLWNRLGATLANGNRSEEAISAYNRALQLQ-------PGYVR 499 (579)
T ss_pred HhcchHHHHHHHHHHHHH-hcCCc------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-------CCeee
Confidence 999999887 33333 24444 35789999999999999999999999999993 33445
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH------HHHHHHHHHHHHHHHcCCchHHHH
Q 008796 404 YLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP------TQIWALSVLTALYQQLGDRGNEME 463 (553)
Q Consensus 404 aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~------~qa~aL~~Lg~ly~alGd~~~A~e 463 (553)
+..+||-.+..+|.+++|..++-.||.+-++..... ...|. .|..+....++++-+.+
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~--tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQ--TLRLALSAMNRSDLLQE 563 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHH--HHHHHHHHcCCchHHHH
Confidence 678999999999999999999999999988742221 23443 34456666777664443
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.74 E-value=0.0002 Score=76.14 Aligned_cols=96 Identities=24% Similarity=0.306 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
|...|...+..|+|++|++.|.+|+++ .|+ -+.++.++|.++..+|++++|+..+.+|+.+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~---~P~-----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~---------- 66 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL---DPN-----NAELYADRAQANIKLGNFTEAVADANKAIELD---------- 66 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence 445566667777777777777777764 333 13466777777777777777777777665431
Q ss_pred HHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 322 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
+. -+.+++.+|.+++..|+|++|+..|++++++.
T Consensus 67 ------------------------P~------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 67 ------------------------PS------------LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred ------------------------cC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 11 34578899999999999999999999999884
No 107
>PLN03077 Protein ECB2; Provisional
Probab=97.74 E-value=0.0018 Score=76.11 Aligned_cols=124 Identities=10% Similarity=-0.064 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--------
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-------- 313 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-------- 313 (553)
.+.|..++...|++++|.+.|.++. .||. ..++.+-..+...|++++|...|.+..+.--.
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~------~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMP-----RRDC------ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCC-----CCCc------chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 3455566666666666666555442 1221 23444444455556666666665544331100
Q ss_pred -------------------------hhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHH
Q 008796 314 -------------------------KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYG 368 (553)
Q Consensus 314 -------------------------~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG 368 (553)
...-..+.+.+...|...|+.++ |..++.....+ + ..+|+.+.
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~---A~~vf~~m~~~-----d----~~s~n~li 361 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE---AEKVFSRMETK-----D----AVSWTAMI 361 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH---HHHHHhhCCCC-----C----eeeHHHHH
Confidence 01123455666777777777654 33334433111 1 24677888
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 008796 369 LLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 369 ~~~~~qGr~~EA~~~L~eAL 388 (553)
..|.+.|++++|.+.|++-.
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 362 SGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHH
Confidence 88888888888888888653
No 108
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.73 E-value=0.023 Score=63.78 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH----------
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL---------- 431 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L---------- 431 (553)
-+++-++..|-+.|++++|+.+..+|+... .-....+..-|.|+-+.|++.+|.+..+.|-.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHT-------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHH
Confidence 344555555555555555555555555542 122334455555555555555555554433332
Q ss_pred --------------------HHHhC-----ChH--HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhHHHHh
Q 008796 432 --------------------AKKLY-----DIP--TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADA 482 (553)
Q Consensus 432 --------------------Arklg-----D~~--~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~~~~~A 482 (553)
+.+-+ |.. .=.|-...-|+.|...|+++.|+..|....+.++++..+++.=
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDF 345 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDF 345 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccH
Confidence 22222 111 2367778899999999999999999999999999998887753
No 109
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.71 E-value=0.00039 Score=61.97 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh
Q 008796 319 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 398 (553)
Q Consensus 319 ~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr 398 (553)
.+..++|..+...|++++..+.+..+.... . . -..+++++|.++..+|++++|...+++++++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------ 82 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-P-----Y---NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP------ 82 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-C-----C---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 445566666666666554222222221110 0 0 346778888888888888888888888877741
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
........+|.++...|++.+|...++.++.+.
T Consensus 83 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 -DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 124466778888888888888888888888764
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.71 E-value=0.00034 Score=66.54 Aligned_cols=114 Identities=12% Similarity=0.016 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.-..++.+|...+..|++++|...|+-...+- ...+....+||.++..+|++.+|++.|..|..+.. .|+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp- 103 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAP- 103 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCc-
Confidence 45788999999999999999999999887774 55677899999999999999999999999999863 332
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhHHHHhhcchhhHHHHhhhc
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISKVK 496 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~~~~~A~~~~~h~~l~~~~~ 496 (553)
++...+|.++...|+.+.|...|+.+....+ ..|+|..|-++..
T Consensus 104 ---~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~----------~~~~~~~l~~~A~ 147 (157)
T PRK15363 104 ---QAPWAAAECYLACDNVCYAIKALKAVVRICG----------EVSEHQILRQRAE 147 (157)
T ss_pred ---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc----------cChhHHHHHHHHH
Confidence 3567899999999999999999998887764 4477777666543
No 111
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.68 E-value=0.0098 Score=63.77 Aligned_cols=245 Identities=17% Similarity=0.129 Sum_probs=155.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008796 171 SAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 250 (553)
Q Consensus 171 ~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l 250 (553)
+..=+++|++..--.-..|+++++-.|..++-+. .|++ .....-..+...+
T Consensus 114 ~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-------~~~~----------------------~l~v~ltrarlll 164 (400)
T COG3071 114 GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-------AGDD----------------------TLAVELTRARLLL 164 (400)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-------CCCc----------------------hHHHHHHHHHHHH
Confidence 3455788999999999999999999988776554 1211 1222334455668
Q ss_pred hhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHH--
Q 008796 251 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVS-- 327 (553)
Q Consensus 251 ~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-~~g~A~aL~NLA~v-- 327 (553)
.+|++..|...+.+++++--+.|. ++.+.-.++...|.+.+......+ ++-.+- ..-++.-+-+-+..
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~--------vlrLa~r~y~~~g~~~~ll~~l~~-L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPE--------VLRLALRAYIRLGAWQALLAILPK-LRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChH--------HHHHHHHHHHHhccHHHHHHHHHH-HHHccCCChHHHHHHHHHHHHHH
Confidence 899999999999999988665555 666777888889999888887763 322222 11223333332222
Q ss_pred HHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------
Q 008796 328 YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN-------------- 393 (553)
Q Consensus 328 yl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~-------------- 393 (553)
....++.+..+.-..-.+..- ..++..-.....++.-+...|++++|.+...++|+-...
T Consensus 236 L~q~~~~~~~~gL~~~W~~~p------r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d 309 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQP------RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGD 309 (400)
T ss_pred HHHHhccccchHHHHHHHhcc------HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCC
Confidence 111111111111111111110 011111234445666778889999999998888875321
Q ss_pred -------------hccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchH
Q 008796 394 -------------HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGN 460 (553)
Q Consensus 394 -------------elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~ 460 (553)
+.++ -++.+..||..+...+.+.+|..+++.|+....... ....||+++.++|++..
T Consensus 310 ~~~l~k~~e~~l~~h~~---~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-------~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 310 PEPLIKAAEKWLKQHPE---DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-------DYAELADALDQLGEPEE 379 (400)
T ss_pred chHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-------hHHHHHHHHHHcCChHH
Confidence 1122 136778899999999999999999998887654433 44568888888999999
Q ss_pred HHHHHHHHH
Q 008796 461 EMENDEYRR 469 (553)
Q Consensus 461 A~e~~e~a~ 469 (553)
|.+.++.+.
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 988888776
No 112
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.67 E-value=0.00031 Score=55.92 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKI 310 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG-~yeeAl~~f~~AL~l 310 (553)
+..+.++|.++...|+|++|+.+|.+|+++ .|+ -+.++.++|.++..+| ++++|...|.+|+++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~-----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPN-----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STT-----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC-----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 346788999999999999999999999998 455 3569999999999999 799999999999875
No 113
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.67 E-value=0.012 Score=68.46 Aligned_cols=215 Identities=17% Similarity=0.078 Sum_probs=146.0
Q ss_pred HHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch------hhHHHHHHHHHHHHHHhCChHH----HHH
Q 008796 270 IRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK------SMQAMCHAYAAVSYFCIGDAES----SSQ 339 (553)
Q Consensus 270 r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~------~g~A~aL~NLA~vyl~~Gd~e~----~~q 339 (553)
...|+-.....+..-..-+++..+..+|++|.....++.+..+.+ ...|....--|.+-++.|+++. ++.
T Consensus 404 ~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~ 483 (894)
T COG2909 404 KALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL 483 (894)
T ss_pred HhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345664444456677788999999999999999999888766552 1244444445677888899887 666
Q ss_pred HHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChH
Q 008796 340 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTV 419 (553)
Q Consensus 340 AL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~ 419 (553)
++...-+. ..+.++.++.++|.+++-+|++++|+.+.+++.++++ +....+....++..-+.|..++|...
T Consensus 484 al~~L~~~--------~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~-~~~~~~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 484 ALVQLPEA--------AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR-QHDVYHLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred HHHhcccc--------cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHhhHHH
Confidence 66655544 1133789999999999999999999999999999996 68888999999999999999999555
Q ss_pred HHHHHHHHHHHH-------------------------------H-----HHhC-----ChHHHHHHHHHHHHHHHHcCCc
Q 008796 420 QAREILRSSLTL-------------------------------A-----KKLY-----DIPTQIWALSVLTALYQQLGDR 458 (553)
Q Consensus 420 eA~~~l~~AL~L-------------------------------A-----rklg-----D~~~qa~aL~~Lg~ly~alGd~ 458 (553)
.|...-...+.- . -++| ......-++..|++++...||+
T Consensus 555 ~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl 634 (894)
T COG2909 555 RAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL 634 (894)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH
Confidence 444331111110 0 0111 1223333445899999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHhhcchhhHHHHhh
Q 008796 459 GNEMENDEYRRKKLDELQKRLADAYSSIHHIELISK 494 (553)
Q Consensus 459 ~~A~e~~e~a~~~~d~L~~~~~~A~~~~~h~~l~~~ 494 (553)
++|......-....-.=+ .+.-+....+-.-++=|
T Consensus 635 ~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lw 669 (894)
T COG2909 635 DKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILW 669 (894)
T ss_pred HHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHh
Confidence 999876655444433322 23333333333333444
No 114
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.012 Score=65.12 Aligned_cols=244 Identities=16% Similarity=0.126 Sum_probs=158.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 008796 183 ILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEAL 262 (553)
Q Consensus 183 ~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l 262 (553)
-..+..|+|++|+.++..|+.. ++. --++--|-..++...|.|.+|++..
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l----------~p~--------------------nhvlySnrsaa~a~~~~~~~al~da 59 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML----------SPT--------------------NHVLYSNRSAAYASLGSYEKALKDA 59 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc----------CCC--------------------ccchhcchHHHHHHHhhHHHHHHHH
Confidence 3456789999999999998887 222 0122456777889999999999999
Q ss_pred HHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHh---CC------
Q 008796 263 VQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI---GD------ 333 (553)
Q Consensus 263 ~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~---Gd------ 333 (553)
.+.++++ |++ +-.+...|-.+..+|+|++|..-|.++|+.--+.. ....+++.++... |+
T Consensus 60 ~k~~~l~---p~w-----~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~---~L~~gl~~a~~~~~~~~~~~~~p~ 128 (539)
T KOG0548|consen 60 TKTRRLN---PDW-----AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK---QLKTGLAQAYLEDYAADQLFTKPY 128 (539)
T ss_pred HHHHhcC---Cch-----hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH---HHHHhHHHhhhHHHHhhhhccCcH
Confidence 9988875 553 33678899999999999999999999998654411 1111112211110 00
Q ss_pred --------h------------------------------HH-HHHHHHhhcccc--------cc---cc--------c-c
Q 008796 334 --------A------------------------------ES-SSQAIDLIGPVY--------QM---KD--------T-I 354 (553)
Q Consensus 334 --------~------------------------------e~-~~qAL~L~r~lg--------d~---~g--------~-~ 354 (553)
+ +. +.+++-.+-.++ .. ++ + .
T Consensus 129 ~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (539)
T KOG0548|consen 129 FHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGF 208 (539)
T ss_pred HHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCC
Confidence 0 00 112221111000 00 00 0 0
Q ss_pred ---cch------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHH
Q 008796 355 ---NGV------REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREIL 425 (553)
Q Consensus 355 ---~~l------r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l 425 (553)
.+. -.+|...-.+|...+..-+++.|..+|..++.+. ..++.....+.++..+|......+....|.+.-
T Consensus 209 ~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g 287 (539)
T KOG0548|consen 209 PIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVG 287 (539)
T ss_pred CccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh
Confidence 111 1258889999999999999999999999999998 577775555555555555555555554444443
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 426 RSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 426 ~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
++.-.-.+ ..+.++..+|.+|...|+++.|..+|+.++...+.
T Consensus 288 re~rad~k------lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt 330 (539)
T KOG0548|consen 288 RELRADYK------LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT 330 (539)
T ss_pred HHHHHHHH------HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence 33333222 25566666888999999999999999987665554
No 115
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.61 E-value=0.15 Score=58.13 Aligned_cols=212 Identities=15% Similarity=0.030 Sum_probs=156.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch---------hhHHHHHHH
Q 008796 253 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---------SMQAMCHAY 323 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~---------~g~A~aL~N 323 (553)
+++..|++.++....+..+.+|. .....+....|.++...+..+++.+...++....... ...++.+.-
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~--~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDP--AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 89999999999999999988884 3344555666778888888999999998887655543 345555544
Q ss_pred HHHHHHHhCChHHHH-------HHHHhhcccc-------c--c--------------cccc--cc-hhHHHHHHHHHHHH
Q 008796 324 AAVSYFCIGDAESSS-------QAIDLIGPVY-------Q--M--------------KDTI--NG-VREEASLHFAYGLL 370 (553)
Q Consensus 324 LA~vyl~~Gd~e~~~-------qAL~L~r~lg-------d--~--------------~g~~--~~-lr~eA~aL~~LG~~ 370 (553)
==.+++..|++.... +.++-..... | - ...+ .+ ..-.+-+++..|..
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~ 310 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH 310 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH
Confidence 445778888866522 2222222110 0 0 0000 01 11137888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcc--------------C-----hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 371 LMRQQDFQEARNRLAKGLQIAHNHMG--------------N-----LQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 371 ~~~qGr~~EA~~~L~eAL~Lar~elG--------------d-----r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
.+..|..+.|..++.+|+++..+..+ + +.....++..++......|++..|....+..-+.
T Consensus 311 ~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 311 NLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL 390 (608)
T ss_pred HhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999965330 0 1335778888999999999999999999999999
Q ss_pred HHHhCC---hHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 008796 432 AKKLYD---IPTQIWALSVLTALYQQLGDRGNEMENDE 466 (553)
Q Consensus 432 ArklgD---~~~qa~aL~~Lg~ly~alGd~~~A~e~~e 466 (553)
..+.++ .......+...|-.+...|+.+.|..+|.
T Consensus 391 ~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 391 CQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 998887 45556778888999999999999999997
No 116
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.60 E-value=0.0097 Score=69.04 Aligned_cols=96 Identities=24% Similarity=0.215 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
...-+..++-++...|+|.+|.++|.....-- + ..-+-+...+|..+..+|.+++|...|+.+|.++-.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~----~--~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~----- 481 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNRE----G--YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD----- 481 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc----c--ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----
Confidence 35678889999999999999999998765432 2 222778999999999999999999999999988632
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEY 467 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~ 467 (553)
-..+...|+.++..+|++++|.+..+.
T Consensus 482 -~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 482 -NLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred -chhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 233566889999999999999988776
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.59 E-value=0.00047 Score=73.38 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHH
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 442 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa 442 (553)
-+...|...+..|+|++|..+|++|+++. -.+ +.++.++|.++..+|++.+|...+++|+.+.. ...
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~---P~~----~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~~~ 70 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLD---PNN----AELYADRAQANIKLGNFTEAVADANKAIELDP------SLA 70 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CCH
Confidence 36677889999999999999999999884 222 45789999999999999999999999998842 234
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 443 WALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 443 ~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
.++..+|.+|..+|++++|...++.+....
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 567899999999999999999998887654
No 118
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0032 Score=63.64 Aligned_cols=148 Identities=18% Similarity=0.102 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHHccchhh---HHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHH
Q 008796 295 GCYSEAAFHYVEAAKITESKSM---QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL 371 (553)
Q Consensus 295 G~yeeAl~~f~~AL~l~~d~~g---~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~ 371 (553)
+.|++|.+.|.+|...++=.-. -..+..-.|..|+. .++. + .|..-++-+.-.
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k----------------~~sk-------h-Daat~YveA~~c 83 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLK----------------AGSK-------H-DAATTYVEAANC 83 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh----------------cCCc-------h-hHHHHHHHHHHH
Confidence 4899999999988775543111 11222333333433 3211 1 344445555556
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 008796 372 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 450 (553)
Q Consensus 372 ~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lal-Gd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ 450 (553)
++.+++++|.+++.+|..|+. +.|.-..-|.-...||++|-.. .|..+|+.+|++|-++.+.-.....--.++.--+.
T Consensus 84 ykk~~~~eAv~cL~~aieIyt-~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYT-DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred hhccChHHHHHHHHHHHHHHH-hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 677899999999999999995 7999888899999999999887 89999999999999987643333222223333333
Q ss_pred HHHHcCCchHHHHHHHH
Q 008796 451 LYQQLGDRGNEMENDEY 467 (553)
Q Consensus 451 ly~alGd~~~A~e~~e~ 467 (553)
.-..+|++.+|.+.|+.
T Consensus 163 yaa~leqY~~Ai~iyeq 179 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQ 179 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555554443
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.58 E-value=0.00094 Score=75.77 Aligned_cols=193 Identities=14% Similarity=0.113 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhh
Q 008796 237 LLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM 316 (553)
Q Consensus 237 L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g 316 (553)
.+.-+..+.+.|+...|.-..|.....+-++ +.|| +.++..+|.+.....+|+.|.+.+. ++.+
T Consensus 422 Erlemw~~vi~CY~~lg~~~kaeei~~q~le---k~~d------~~lyc~LGDv~~d~s~yEkawElsn-------~~sa 485 (777)
T KOG1128|consen 422 ERLEMWDPVILCYLLLGQHGKAEEINRQELE---KDPD------PRLYCLLGDVLHDPSLYEKAWELSN-------YISA 485 (777)
T ss_pred HhHHHHHHHHHHHHHhcccchHHHHHHHHhc---CCCc------chhHHHhhhhccChHHHHHHHHHhh-------hhhH
Confidence 3455667788888888877777777776665 4555 5577888888777777777766665 3333
Q ss_pred HHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 317 QAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 317 ~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
. |...+|......+++++ +++++++ .+. .-.+||++|.+....++++.|...|..++.+.
T Consensus 486 r--A~r~~~~~~~~~~~fs~~~~hle~sl~~-npl------------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~- 549 (777)
T KOG1128|consen 486 R--AQRSLALLILSNKDFSEADKHLERSLEI-NPL------------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE- 549 (777)
T ss_pred H--HHHhhccccccchhHHHHHHHHHHHhhc-Ccc------------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-
Confidence 3 55666666666788777 5555553 222 34689999999999999999999999999883
Q ss_pred HhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 393 NHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 393 ~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
..-+.+.|+|+..|...|+-.+|...+.+|+.-- .-+.+.|=... -+--..|+.+.|...+.+-....
T Consensus 550 ------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn----~~~w~iWENym--lvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 550 ------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN----YQHWQIWENYM--LVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC----CCCCeeeechh--hhhhhcccHHHHHHHHHHHHHhh
Confidence 3346789999999999999999999999887542 23333442222 24456677777777666655544
Q ss_pred H
Q 008796 473 D 473 (553)
Q Consensus 473 d 473 (553)
+
T Consensus 618 ~ 618 (777)
T KOG1128|consen 618 K 618 (777)
T ss_pred h
Confidence 3
No 120
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.56 E-value=0.0013 Score=73.64 Aligned_cols=140 Identities=10% Similarity=0.050 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChH----H-HHHHHHhhccccc
Q 008796 278 ACESMIEMLRGQYAHSVGC---YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE----S-SSQAIDLIGPVYQ 349 (553)
Q Consensus 278 ~~~A~~~~lLG~~~~alG~---yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e----~-~~qAL~L~r~lgd 349 (553)
...|.-+++.|..+...+. ++.|..+|++|+++.-+. +.++..++++|.....+. . ..++.+..+....
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF---TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3467777888877766554 889999999999876543 444444455554432221 1 3333333333211
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 008796 350 MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL 429 (553)
Q Consensus 350 ~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL 429 (553)
... .. ..+.++..+|.++...|++++|..++++|+.+- . . +.++..+|.++...|++++|.+.+++|+
T Consensus 413 l~~--~~--~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--p----s--~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 413 LPE--LN--VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--M----S--WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred ccc--Cc--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C----C--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 100 01 134678889999999999999999999999983 1 1 5689999999999999999999999998
Q ss_pred HHH
Q 008796 430 TLA 432 (553)
Q Consensus 430 ~LA 432 (553)
.+.
T Consensus 481 ~L~ 483 (517)
T PRK10153 481 NLR 483 (517)
T ss_pred hcC
Confidence 874
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.56 E-value=0.001 Score=63.29 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 433 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LAr 433 (553)
-+..+++||.++..+|+|++|...|.+|..+. ..| +....++|.+++..|+...|+..++.|+.++.
T Consensus 68 ~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~---~dd----p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 68 SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK---IDA----PQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999999994 344 34678999999999999999999999999984
No 122
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.53 E-value=0.055 Score=47.66 Aligned_cols=203 Identities=24% Similarity=0.208 Sum_probs=148.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
.....+......+++..+...+..++.. ... ......+...|.+....+.+.++...+..++...... ...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 131 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALEL-ELL-----PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP---DLA 131 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh-hhc-----cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc---chH
Confidence 4456677778999999999999999887 112 2346688899999999999999999999888755443 111
Q ss_pred HHHHHH-HHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 008796 321 HAYAAV-SYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM 395 (553)
Q Consensus 321 L~NLA~-vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~el 395 (553)
....+. ++...|+++. +.+++. ..+. ....+......+..+...+++++|...+.+++.... ..
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 200 (291)
T COG0457 132 EALLALGALYELGDYEEALELYEKALE-LDPE---------LNELAEALLALGALLEALGRYEEALELLEKALKLNP-DD 200 (291)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC---------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc-cc
Confidence 222222 7888899876 556644 2221 012556677777778999999999999999999974 22
Q ss_pred cChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 396 GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 396 Gdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
.......++..+...|+..+|...+..++..... .......++..+...|+..++...+.........
T Consensus 201 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 201 -----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4567888999999999999999999999988765 3445566666666667677777766666555443
No 123
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.51 E-value=0.018 Score=61.74 Aligned_cols=224 Identities=16% Similarity=0.156 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----------HHHHHHHcCCCCC-------cccccchhhHHHHHHHHHHH
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQT----------IQDALLKLGITDG-------VREVDLQHSAIWMAGVYLML 237 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~----------~~~~l~klG~~~~-------~~e~~l~~~~~~~a~vy~~L 237 (553)
..|++-.+-....+|+++-|....+..+.. ....-.++|.... .++.+ ++.-=
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~----------~l~~~ 222 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG----------LLSDE 222 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc----------CCChH
Confidence 567888888899999999988887776655 1111111111110 00000 00000
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
++.-|++.+..-+.+-.-++.. ..--..+.++.|+..+ +.+.+-..........|.+++|.....++++...|....
T Consensus 223 e~~~le~~a~~glL~q~~~~~~--~~gL~~~W~~~pr~lr-~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~ 299 (400)
T COG3071 223 EAARLEQQAWEGLLQQARDDNG--SEGLKTWWKNQPRKLR-NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC 299 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcccc--chHHHHHHHhccHHhh-cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH
Confidence 3333333333322211000000 0112335666676433 345566677778888999999999999999988876621
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHh-hcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDL-IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L-~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
+. .-....|+++...++++- ....++ ....+..+|..++..+.+.+|..+|+.|++..
T Consensus 300 ~~------~~~l~~~d~~~l~k~~e~~l~~h~~----------~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~----- 358 (400)
T COG3071 300 RL------IPRLRPGDPEPLIKAAEKWLKQHPE----------DPLLLSTLGRLALKNKLWGKASEALEAALKLR----- 358 (400)
T ss_pred HH------HhhcCCCCchHHHHHHHHHHHhCCC----------ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-----
Confidence 11 122445666663333332 222211 33788999999999999999999999988873
Q ss_pred ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 008796 397 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 435 (553)
Q Consensus 397 dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl 435 (553)
..+.....||.++..+|++.+|.++.+.||.+...-
T Consensus 359 ---~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 359 ---PSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred ---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 234567789999999999999999999999766543
No 124
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.48 E-value=0.001 Score=55.48 Aligned_cols=83 Identities=18% Similarity=0.259 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH
Q 008796 294 VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR 373 (553)
Q Consensus 294 lG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~ 373 (553)
.|+|+.|+.+|++.++...... ....+.++|.+|...|+++.....+.. .+.. . .-..+.+.+|.+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~--~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------P--SNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------H--CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------C--CCHHHHHHHHHHHHH
Confidence 5899999999999998777533 666778899999999998764333333 2221 1 134666777999999
Q ss_pred cCCHHHHHHHHHHH
Q 008796 374 QQDFQEARNRLAKG 387 (553)
Q Consensus 374 qGr~~EA~~~L~eA 387 (553)
+|+|++|+.+|.+|
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999875
No 125
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0069 Score=65.43 Aligned_cols=181 Identities=15% Similarity=0.027 Sum_probs=126.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
-..|.+.+..+|..+|+=+|+.|..+. |.. -.++.-|-+.+.+.|++.||....+.+.+.++. -|.++.
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~La---p~r-----L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~---sA~~Lt 406 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLA---PYR-----LEIYRGLFHSYLAQKRFKEANALANWTIRLFQN---SARSLT 406 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcc---hhh-----HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc---chhhhh
Confidence 345677788899999999999998774 222 224555556677899999999999888876654 234444
Q ss_pred HHH-HHHHHhCChHH-----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 323 YAA-VSYFCIGDAES-----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 323 NLA-~vyl~~Gd~e~-----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
-+| .|+.-.-.-.+ ++.+|. ++|.| .-+-+.++.++...|++..+...++++|.+.- .-
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~-~~P~Y------------~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~ 471 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLK-INPIY------------TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DV 471 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhc-cCCcc------------HHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--cc
Confidence 443 34432111111 556655 34442 23557789999999999999999999999962 22
Q ss_pred ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHH
Q 008796 397 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE 461 (553)
Q Consensus 397 dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A 461 (553)
...+.||.++.+...+.+|+++|..||.+ |+.. ..++.+|-++-+...+++.-
T Consensus 472 ------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~-----dP~~-~~sl~Gl~~lEK~~~~~DAT 524 (564)
T KOG1174|consen 472 ------NLHNHLGDIMRAQNEPQKAMEYYYKALRQ-----DPKS-KRTLRGLRLLEKSDDESDAT 524 (564)
T ss_pred ------HHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----Cccc-hHHHHHHHHHHhccCCCCcc
Confidence 25678999999999999999999999976 3333 34677777776666655433
No 126
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00035 Score=55.16 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 365 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 365 ~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
+.+|..++.+|++++|...|+++++.. ..-..++..+|.++..+|++++|+..+++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357899999999999999999998774 336778999999999999999999999999865
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.45 E-value=0.024 Score=55.38 Aligned_cols=173 Identities=14% Similarity=0.114 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
+......|......|+|++|...|..-............+...+|.+|...|+++....+.+-+-..+-. +. ..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~----~~--~~ 78 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN----SP--KA 78 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-----T--TH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----Cc--ch
Confidence 4577888999999999999999999988888777778889999999999999988755544444433211 11 15
Q ss_pred HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHH---------HhccC-hHhHHHHHHHHHHHHHHCCChH
Q 008796 361 ASLHFAYGLLLMRQQD-----------FQEARNRLAKGLQIAH---------NHMGN-LQLVSQYLTILGNLALALHDTV 419 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr-----------~~EA~~~L~eAL~Lar---------~elGd-r~leA~aL~~LG~i~lalGd~~ 419 (553)
..+++.+|.+++.+.+ ..+|+..|++-++..= ..+.. +...|.--..+|..|...|.+.
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 6788999998877643 3477777776655421 00000 2334555567899999999999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHH
Q 008796 420 QAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEM 462 (553)
Q Consensus 420 eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~ 462 (553)
.|...++..+ +.-++....-.++..|.+.|..+|....|.
T Consensus 159 aA~~r~~~v~---~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVI---ENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHH---HHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHH---HHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9998888765 556777777779999999999999988543
No 128
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.097 Score=57.78 Aligned_cols=293 Identities=16% Similarity=0.140 Sum_probs=191.1
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC--Ccccccch-hhHHHHHHHHHHH-HHHHHHHH
Q 008796 170 KSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITD--GVREVDLQ-HSAIWMAGVYLML-LMQFLENK 245 (553)
Q Consensus 170 ~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~--~~~e~~l~-~~~~~~a~vy~~L-~a~lLenL 245 (553)
+|-+-++.-+..+.++..-|+-..+ ..+++++++-+.- +.++ +..|.=|. ++++.. ..++= ++-.|-.+
T Consensus 207 ~E~LkvFyl~lql~yy~~~gq~rt~----k~~lkQLQ~siqt-ist~~~~h~e~ilgsps~~l~--~wlpkeqicaLV~l 279 (629)
T KOG2300|consen 207 KEMLKVFYLVLQLSYYLLPGQVRTV----KPALKQLQDSIQT-ISTSSRGHDEKILGSPSPILF--EWLPKEQICALVYL 279 (629)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhh----HHHHHHHHHHHhc-cCCCCCCccccccCCCChHHH--hhccHhhhHhhhhh
Confidence 7778888777888888888885544 4455555543333 2222 22222221 111110 00000 22233333
Q ss_pred HHHH--HhhCCHHHHHHHHHHHHHHHHHCCch------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhh-
Q 008796 246 VAVE--LTRSGFVEAQEALVQMKNWFIRFPTI------LQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM- 316 (553)
Q Consensus 246 g~~~--l~~Gr~aeAl~~l~qAL~L~r~~~dl------~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g- 316 (553)
..+- ...|=|.+|+++..+++..-++.+.. +.-..-+.+..+-....-.|++.+|++-......-.....+
T Consensus 280 ~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~ 359 (629)
T KOG2300|consen 280 VTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTP 359 (629)
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCch
Confidence 3333 45688999999999999998887651 11222234445566666789999999888877775555443
Q ss_pred ------HHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 317 ------QAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK 386 (553)
Q Consensus 317 ------~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~e 386 (553)
.+....-+|.-..-.|.++. +..|+.+.... ++ .|.+-.+++..|.++|+-+. +-+
T Consensus 360 ~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~--------dl--~a~~nlnlAi~YL~~~~~ed----~y~ 425 (629)
T KOG2300|consen 360 LLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI--------DL--QAFCNLNLAISYLRIGDAED----LYK 425 (629)
T ss_pred HHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH--------HH--HHHHHHhHHHHHHHhccHHH----HHH
Confidence 33334444443333444443 66666665554 44 78899999999999888554 334
Q ss_pred HHHHHHH----hccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHH
Q 008796 387 GLQIAHN----HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEM 462 (553)
Q Consensus 387 AL~Lar~----elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~ 462 (553)
+|+...- ......+++.++..-|-....++++.||...+++.|..++.-+-..--+..+..||.+....|+..+++
T Consensus 426 ~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~ 505 (629)
T KOG2300|consen 426 ALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESR 505 (629)
T ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4444321 223357889999999999999999999999999999999777778888999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhHHHHhh
Q 008796 463 ENDEYRRKKLDELQKRLADAY 483 (553)
Q Consensus 463 e~~e~a~~~~d~L~~~~~~A~ 483 (553)
+.-+=++..+..+.+-..+=-
T Consensus 506 nmvrpamqlAkKi~Di~vqLw 526 (629)
T KOG2300|consen 506 NMVRPAMQLAKKIPDIPVQLW 526 (629)
T ss_pred hccchHHHHHhcCCCchHHHH
Confidence 877777776666555444433
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.055 Score=54.78 Aligned_cols=173 Identities=13% Similarity=0.022 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccc
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 356 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~ 356 (553)
+......|.-....|+|++|...|++.+...........+..++|.+|...|++++ +++.+.+.-..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~--------- 102 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--------- 102 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC---------
Confidence 44567788888889999999999999998887777777889999999999999887 33333332211
Q ss_pred hhHHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHH---------HHhccC-hHhHHHHHHHH
Q 008796 357 VREEASLHFAYGLLLMRQQ---------------DF---QEARNRLAKGLQIA---------HNHMGN-LQLVSQYLTIL 408 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qG---------------r~---~EA~~~L~eAL~La---------r~elGd-r~leA~aL~~L 408 (553)
.....+++.+|.++...+ +. .+|...|++-++.. +..+.. +...|.--..+
T Consensus 103 -~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~i 181 (243)
T PRK10866 103 -PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSV 181 (243)
T ss_pred -CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 125789999998876665 22 34555555544431 100000 12223334477
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 008796 409 GNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDE 466 (553)
Q Consensus 409 G~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e 466 (553)
|..|...|++..|..-++..+. +-++-...-.++..|.++|..+|.+++|.+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~---~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLR---DYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 8889999999888877776664 566667777899999999999999999987543
No 130
>PLN02789 farnesyltranstransferase
Probab=97.36 E-value=0.087 Score=55.64 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=137.6
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008796 170 KSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVE 249 (553)
Q Consensus 170 ~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~ 249 (553)
.+-.-++-|+-.++ ...++.++|...++++++. .+. +++.|. | +..+|..
T Consensus 34 ~~~~~a~~~~ra~l--~~~e~serAL~lt~~aI~l----------nP~-------~ytaW~---~---R~~iL~~----- 83 (320)
T PLN02789 34 PEFREAMDYFRAVY--ASDERSPRALDLTADVIRL----------NPG-------NYTVWH---F---RRLCLEA----- 83 (320)
T ss_pred HHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHH----------Cch-------hHHHHH---H---HHHHHHH-----
Confidence 34444555555553 4456777777777777766 111 144442 2 3333433
Q ss_pred HhhC-CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHccchhhHHHHHHHHHH
Q 008796 250 LTRS-GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCY--SEAAFHYVEAAKITESKSMQAMCHAYAAV 326 (553)
Q Consensus 250 l~~G-r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~y--eeAl~~f~~AL~l~~d~~g~A~aL~NLA~ 326 (553)
.| .+.+|+..+.+++.. .|. -.++.+..|.+...+|.. ++++.++.++++.-. .-..+..+.++
T Consensus 84 --L~~~l~eeL~~~~~~i~~---npk-----nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp---kNy~AW~~R~w 150 (320)
T PLN02789 84 --LDADLEEELDFAEDVAED---NPK-----NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA---KNYHAWSHRQW 150 (320)
T ss_pred --cchhHHHHHHHHHHHHHH---CCc-----chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc---ccHHHHHHHHH
Confidence 35 578899888888866 444 134678888888888874 678888888875432 23456777788
Q ss_pred HHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhc
Q 008796 327 SYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ---QDF----QEARNRLAKGLQIAHNHM 395 (553)
Q Consensus 327 vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~q---Gr~----~EA~~~L~eAL~Lar~el 395 (553)
+....|++++ +.+++++- +- -..+++..|.+.... |++ +++..+..+++.+. -
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~~d-~~------------N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~---P 214 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLEED-VR------------NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN---P 214 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHHHC-CC------------chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC---C
Confidence 8888888765 44444431 10 246888888887765 334 47888888888874 2
Q ss_pred cChHhHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc
Q 008796 396 GNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL 455 (553)
Q Consensus 396 Gdr~leA~aL~~LG~i~la----lGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~al 455 (553)
.| ..+.+.+|.++.. ++...+|.+.+.+++.. .+.=..++..|+++|...
T Consensus 215 ~N----~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 215 RN----ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred CC----cCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc------cCCcHHHHHHHHHHHHhh
Confidence 22 3477888888887 34556677777776552 222235788899999764
No 131
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.36 E-value=0.0017 Score=54.09 Aligned_cols=83 Identities=23% Similarity=0.205 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 008796 374 QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 453 (553)
Q Consensus 374 qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~ 453 (553)
+|+|++|..++.+.++... . +. ....+..||.++..+|++.+|...+++ +.+ ......+...+|+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~--~-~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP--T-NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------DPSNPDIHYLLARCLL 69 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC--G-TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------HHCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC--C-Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------CCCCHHHHHHHHHHHH
Confidence 6899999999999999962 2 32 566788899999999999999999888 222 1223556667899999
Q ss_pred HcCCchHHHHHHHHH
Q 008796 454 QLGDRGNEMENDEYR 468 (553)
Q Consensus 454 alGd~~~A~e~~e~a 468 (553)
.+|++++|.++++.+
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
Confidence 999999999998864
No 132
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.012 Score=63.66 Aligned_cols=177 Identities=14% Similarity=0.081 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008796 172 AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 251 (553)
Q Consensus 172 ~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~ 251 (553)
+-|.-.-+.-+.+....|.++.|.+-.-.-|+. ... + + .++.+ -|.|..+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----------d~~----n----------~----~al~v--rg~~~yy 215 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL----------DAT----N----------A----EALYV--RGLCLYY 215 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc----------ccc----h----------h----HHHHh--ccccccc
Confidence 345555677888888899999877654333333 111 0 0 23333 3556788
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCc---h-hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-hhhHHHHHHHHHH
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPT---I-LQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAV 326 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~d---l-~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-~~g~A~aL~NLA~ 326 (553)
.++.+.|+.++.+++++--..-+ . ...-.--.-...|--....|+|..|.+.|..|+.+.-+ ...-|.++.|.|.
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 99999999999999988444322 0 00112234566788899999999999999999988765 4568899999999
Q ss_pred HHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 327 SYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 327 vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
+..+.|+.++ |..|+.|=-. ---++.+-|.+|..++++++|.+.|++|.+..
T Consensus 296 v~~rLgrl~eaisdc~~Al~iD~s-------------yikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEALKIDSS-------------YIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcccCCchhhhhhhhhhhhcCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999887 8888876221 23567888999999999999999999999996
No 133
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.30 E-value=0.08 Score=60.93 Aligned_cols=206 Identities=13% Similarity=0.047 Sum_probs=153.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
+..+|..+....|+|..+.+.|++++..+- ++...++.++..+.+-|.-..|....+.++....++.....+
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~~~--------~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPFSF--------GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--------hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 447778888999999999999999998763 345578888999999999999999999998887777766666
Q ss_pred HHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCC-----------HHHHHHHHH
Q 008796 321 HAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD-----------FQEARNRLA 385 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr-----------~~EA~~~L~ 385 (553)
+..-..++.+.|..++ ..+|+.+.+.. .+.+ ...++..+|.+|..+-+ +.++...++
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~------~~~l--~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQ------RSHL--KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhh------hhhh--hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 6666666666665554 55666655332 1222 56778888888866542 344555555
Q ss_pred HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 386 KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 386 eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
+|++.- -.|+ .+++.|+-=|..+++...|.++++++|.+-+ .....+...|+.+..+.+++..|.+.-
T Consensus 469 ~av~~d---~~dp----~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-----~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 469 EAVQFD---PTDP----LVIFYLALQYAEQRQLTSALDYAREALALNR-----GDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHhcC---CCCc----hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 555542 2333 6889999999999999999999999998832 334557788999999999999999988
Q ss_pred HHHHHHHHH
Q 008796 466 EYRRKKLDE 474 (553)
Q Consensus 466 e~a~~~~d~ 474 (553)
..+..-+..
T Consensus 537 d~al~E~~~ 545 (799)
T KOG4162|consen 537 DAALEEFGD 545 (799)
T ss_pred HHHHHHhhh
Confidence 888777766
No 134
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.27 E-value=0.0049 Score=57.51 Aligned_cols=107 Identities=20% Similarity=0.126 Sum_probs=88.5
Q ss_pred CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccc
Q 008796 272 FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPV 347 (553)
Q Consensus 272 ~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~l 347 (553)
.|+.-..-.+..+.+-|....--|+.++|++.|.+|+.+.-. .+.++||-|..|..+|+.++ +++||++.++-
T Consensus 34 ~~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 34 EPDTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred CCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 344334455667777788888899999999999999988643 47899999999999999887 99999998876
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 348 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 348 gd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
+ +..+.++..-|.+|..+|+.+.|+.-|..|-.+
T Consensus 111 t---------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 T---------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred c---------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 2 236788889999999999999999999998554
No 135
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.015 Score=60.70 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-hhhHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMC 320 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-~~g~A~a 320 (553)
|.-||.|+....+|.+|..+|+|...++-+... .+..-++.++. -+.|..|++... ..+| ....-.|
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q-YrlY~AQSLY~-------A~i~ADALrV~~----~~~D~~~L~~~~ 114 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ-YRLYQAQSLYK-------ACIYADALRVAF----LLLDNPALHSRV 114 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH-HHHHHHHHHHH-------hcccHHHHHHHH----HhcCCHHHHHHH
Confidence 567889999999999999999987665433222 12223333333 345555655443 5555 3444444
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh
Q 008796 321 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 400 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l 400 (553)
+---+-+....||...++.-++-.-. .+.|.+.++.|.+.+..|.|++|...|+.|+..+ |-..+
T Consensus 115 lqLqaAIkYse~Dl~g~rsLveQlp~-----------en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs----Gyqpl 179 (459)
T KOG4340|consen 115 LQLQAAIKYSEGDLPGSRSLVEQLPS-----------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS----GYQPL 179 (459)
T ss_pred HHHHHHHhcccccCcchHHHHHhccC-----------CCccchhccchheeeccccHHHHHHHHHHHHhhc----CCCch
Confidence 43333333344554433332221111 1278899999999999999999999999999874 55567
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 008796 401 VSQYLTILGNLALALHDTVQAREILRSSLT 430 (553)
Q Consensus 401 eA~aL~~LG~i~lalGd~~eA~~~l~~AL~ 430 (553)
.|. +++-.|.+.|++.+|.++-.+-..
T Consensus 180 lAY---niALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 180 LAY---NLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred hHH---HHHHHHHhhhhHHHHHHHHHHHHH
Confidence 665 788899999999999887655443
No 136
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.073 Score=54.41 Aligned_cols=229 Identities=13% Similarity=0.042 Sum_probs=151.3
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHH
Q 008796 167 WLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKV 246 (553)
Q Consensus 167 WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg 246 (553)
|=|+.-=-+-.|-=..+.|+....|+++-.+..+|.+-- + .+ ...|. -+-..|..+
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y----E----------nn---rslfh-------AAKayEqaa 78 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY----E----------NN---RSLFH-------AAKAYEQAA 78 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH----H----------hc---ccHHH-------HHHHHHHHH
Confidence 666666666677778889999999999999999998661 1 11 11121 112247778
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--hhhHHH-HHHH
Q 008796 247 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAM-CHAY 323 (553)
Q Consensus 247 ~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d--~~g~A~-aL~N 323 (553)
+..-.+..+.|+...+++|..++.+.|.. ...+.++--.|.... --+.++|+..|++++..... +.-+|+ -...
T Consensus 79 mLake~~klsEvvdl~eKAs~lY~E~Gsp--dtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 79 MLAKELSKLSEVVDLYEKASELYVECGSP--DTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCc--chHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 88888999999999999999999998773 334555555555544 34899999999999997744 444443 3456
Q ss_pred HHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHH
Q 008796 324 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 403 (553)
Q Consensus 324 LA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~ 403 (553)
.+.++.+...+++...++---....+.+..+.+ ........=++|+...+|..|+.+++.+-.+- .......+.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~---~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip---~f~~sed~r 229 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS---QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP---AFLKSEDSR 229 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc---HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc---cccChHHHH
Confidence 667777665666522221111111122222222 22334444567788889999999999986663 122355566
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHH
Q 008796 404 YLTILGNLALALHDTVQAREILRSSL 429 (553)
Q Consensus 404 aL~~LG~i~lalGd~~eA~~~l~~AL 429 (553)
++-+|=.. ...||.++.-+++...+
T Consensus 230 ~lenLL~a-yd~gD~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 230 SLENLLTA-YDEGDIEEIKKVLSSPT 254 (308)
T ss_pred HHHHHHHH-hccCCHHHHHHHHcChH
Confidence 77666664 47899999888876653
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.22 E-value=0.015 Score=68.87 Aligned_cols=189 Identities=10% Similarity=-0.061 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
..-.+..|+..+...+++++|++..+.+++. +|+. ...+..+|..+.+.+.+++|... .++.++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~-----i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~ 99 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKS-----ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW 99 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcc-----eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch
Confidence 5677888999999999999999999966655 5552 33778888899999998888877 666665543321
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
..+ -.+|.+.|+ .+ . .-.+++.+|.+|-..|++++|...++++|++-
T Consensus 100 ~~v----e~~~~~i~~-------------~~-------~---~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------ 146 (906)
T PRK14720 100 AIV----EHICDKILL-------------YG-------E---NKLALRTLAEAYAKLNENKKLKGVWERLVKAD------ 146 (906)
T ss_pred hHH----HHHHHHHHh-------------hh-------h---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Confidence 111 111112111 10 1 12367777777777777777777777777762
Q ss_pred hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-------------Hh----CC---h--HHHHHHHHHHH------
Q 008796 398 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK-------------KL----YD---I--PTQIWALSVLT------ 449 (553)
Q Consensus 398 r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LAr-------------kl----gD---~--~~qa~aL~~Lg------ 449 (553)
..-+.+||++|..+... +.++|+.|+.+|+...= ++ +| . ..+...+..++
T Consensus 147 -~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 147 -RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred -cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHH
Confidence 33456777777777777 77777777777766521 11 11 0 11122233333
Q ss_pred ------HHHHHcCCchHHHHHHHHHHHH
Q 008796 450 ------ALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 450 ------~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.-|....+++++.+.+....+.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 6777888888888777766654
No 138
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.21 E-value=0.00094 Score=72.88 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHH-HHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS-QYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA-~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
-+.+++++|.+++..|+|++|...|++||++.- + ..++ .+++++|.+|..+|+.++|.+++++|+.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P----d-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNP----N-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----C-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999941 1 2333 67999999999999999999999999997
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.20 E-value=0.071 Score=54.82 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=67.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 008796 186 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 265 (553)
Q Consensus 186 ~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qA 265 (553)
...|+|++|+..+++.+.. .+.. .| ....+..+|.+++..|+|++|+..|..+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~---------yP~s---------------~~---a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK---------YPDS---------------TY---QPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH---------CcCC---------------cc---hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4458888888777776666 1111 01 2223456677778888888888888887
Q ss_pred HHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh
Q 008796 266 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 315 (553)
Q Consensus 266 L~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~ 315 (553)
++.+-..|. .+.++..+|.++..+|++++|...|++.++..-+..
T Consensus 207 v~~yP~s~~-----~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 207 VKNYPKSPK-----AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHCCCCcc-----hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 776544433 455777788888888888888888888777665433
No 140
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.20 E-value=0.0052 Score=57.36 Aligned_cols=102 Identities=18% Similarity=0.080 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
...+-.-|.+...-|+.++|++.|.+||.++ ..-+.++|+-+..+.-+|+.++|.+-+.+||.++..- ...
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~-------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trt 113 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLA-------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRT 113 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhc-------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chH
Confidence 3445556777888899999999999999997 2346789999999999999999999999999998655 345
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 441 QIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 441 qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.+.++..-|-+|+..|+-+.|+.-|+.+..+
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5666677788999999999999888876543
No 141
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.19 E-value=0.00085 Score=69.70 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=105.3
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q 008796 246 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 325 (553)
Q Consensus 246 g~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA 325 (553)
|.++...|++++|++.+.+. +.+ + +..+.=.++..++|++.|...+...-+..+| ...+....|
T Consensus 109 A~i~~~~~~~~~AL~~l~~~-------~~l----E--~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD---~~l~qLa~a 172 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG-------GSL----E--LLALAVQILLKMNRPDLAEKELKNMQQIDED---SILTQLAEA 172 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT-------TCH----H--HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC---HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcc-------Ccc----c--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---HHHHHHHHH
Confidence 44557789999888777642 332 2 2234556778899999999999865444333 445566667
Q ss_pred HHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHH
Q 008796 326 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 405 (553)
Q Consensus 326 ~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL 405 (553)
++.+..|. +.+..|.-++.++.++.+. -...++.++.+++.+|+|+||...+.+||..- - .-..+|
T Consensus 173 wv~l~~g~-e~~~~A~y~f~El~~~~~~------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~---~----~~~d~L 238 (290)
T PF04733_consen 173 WVNLATGG-EKYQDAFYIFEELSDKFGS------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD---P----NDPDTL 238 (290)
T ss_dssp HHHHHHTT-TCCCHHHHHHHHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----C----CHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHHHHhccCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---c----CCHHHH
Confidence 78888887 5577777788887655421 34678999999999999999999999997642 2 235689
Q ss_pred HHHHHHHHHCCChHHH-HHHHHH
Q 008796 406 TILGNLALALHDTVQA-REILRS 427 (553)
Q Consensus 406 ~~LG~i~lalGd~~eA-~~~l~~ 427 (553)
.++..+...+|++.++ .++..+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHH
Confidence 9999999999999554 444443
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.13 E-value=0.027 Score=66.63 Aligned_cols=225 Identities=14% Similarity=0.020 Sum_probs=144.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 008796 184 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 263 (553)
Q Consensus 184 ~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~ 263 (553)
.+...|+++++...++.+++. .+. .+.++..+|.++...+++.+|.-.
T Consensus 40 ~~~~~~~~deai~i~~~~l~~----------~P~--------------------~i~~yy~~G~l~~q~~~~~~~~lv-- 87 (906)
T PRK14720 40 AYKSENLTDEAKDICEEHLKE----------HKK--------------------SISALYISGILSLSRRPLNDSNLL-- 87 (906)
T ss_pred HHHhcCCHHHHHHHHHHHHHh----------CCc--------------------ceehHHHHHHHHHhhcchhhhhhh--
Confidence 455789999999988877776 222 344456677788888888888877
Q ss_pred HHHHHHHHCCch----------h-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhC
Q 008796 264 QMKNWFIRFPTI----------L-QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 332 (553)
Q Consensus 264 qAL~L~r~~~dl----------~-~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~G 332 (553)
.++.++...++. . .+..-.++..+|.++..+|++++|.+.++++++.. ..-+.+++|+|..|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-
Confidence 777777665520 0 11122477888888888888888888888888765 56678888888888776
Q ss_pred ChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------HHhccCh
Q 008796 333 DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA--------------HNHMGNL 398 (553)
Q Consensus 333 d~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La--------------r~elGdr 398 (553)
+. ..|+.++...- ..+....+|.++++.-.+-+..- ..++|.
T Consensus 164 dL---~KA~~m~~KAV--------------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~- 219 (906)
T PRK14720 164 DK---EKAITYLKKAI--------------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF- 219 (906)
T ss_pred hH---HHHHHHHHHHH--------------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc-
Confidence 43 33333333220 00222334444444333333322 112222
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~ 477 (553)
--.+..+.-|=+-|....+++++...++.+|.+-.+ -.+++..|.+.|+ |.|.. -.+++.+.++++--..
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~------n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK------NNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNN 289 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc------chhhHHHHHHHHH--HHccC-cchHHHHHHHhccccC
Confidence 112223333447788888899999999998887443 4567889999998 56665 7788888888875443
No 143
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.07 E-value=0.0017 Score=51.22 Aligned_cols=61 Identities=21% Similarity=0.159 Sum_probs=52.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 312 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~ 312 (553)
.+|..++..|+|++|++.++++++.. |+ -+.++..+|.++..+|++++|...|++++++.-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~---P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD---PD-----NPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS---TT-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 46778899999999999999998775 65 466999999999999999999999999987653
No 144
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.03 E-value=0.11 Score=58.96 Aligned_cols=229 Identities=15% Similarity=0.053 Sum_probs=155.7
Q ss_pred CCHHHHHHHHH-----HHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 008796 189 GLFKECMQRIQ-----SGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 263 (553)
Q Consensus 189 G~~dka~ky~e-----kAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~ 263 (553)
+.|+++.++|+ ++|..++.++.|-+.-.. .|-..|....-.|+-.+|....+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge-----------------------slAmkGL~L~~lg~~~ea~~~vr 65 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE-----------------------SLAMKGLTLNCLGKKEEAYELVR 65 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch-----------------------hHHhccchhhcccchHHHHHHHH
Confidence 45677777654 789999998886543322 14455666677899999999999
Q ss_pred HHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH-HHHHHH
Q 008796 264 QMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-SSQAID 342 (553)
Q Consensus 264 qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~-~~qAL~ 342 (553)
.++. .|+ .-..+...+|.+..+-..|++|...|+.|+++-.+.. ..+.-++..-...|+++. ...=..
T Consensus 66 ~glr-----~d~---~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~---qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 66 LGLR-----NDL---KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL---QILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred HHhc-----cCc---ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8887 332 1245788899999999999999999999998776632 235556666667777776 221112
Q ss_pred hhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hccChHhHHHHHHHHHHHHHHCCChHHH
Q 008796 343 LIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN-HMGNLQLVSQYLTILGNLALALHDTVQA 421 (553)
Q Consensus 343 L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~-elGdr~leA~aL~~LG~i~lalGd~~eA 421 (553)
+++-. .+.=..|...+..++..|+|..|...+++--.-.+. -.+..+....++..--.++...|..++|
T Consensus 135 LLql~----------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 135 LLQLR----------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred HHHhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 22211 013356888999999999999999999888777531 1223455677777778888999987777
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 008796 422 REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 467 (553)
Q Consensus 422 ~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~ 467 (553)
.+++.. .- ++..........-++++..+|++++|...++.
T Consensus 205 le~L~~---~e---~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 205 LEHLLD---NE---KQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHh---hh---hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 766432 12 22222333444566788888999998766544
No 145
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.02 E-value=0.0057 Score=69.66 Aligned_cols=162 Identities=22% Similarity=0.243 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH-------------------HHHHHHHHhCChHH----H
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA-------------------YAAVSYFCIGDAES----S 337 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~-------------------NLA~vyl~~Gd~e~----~ 337 (553)
-.+...++....+.|+..+|...|++ +... .....|+. +.++.|...||.-. +
T Consensus 398 Wq~q~~laell~slGitksAl~I~Er-lemw---~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFER-LEMW---DPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHh-HHHH---HHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 34667788888999999999988872 1111 11122222 33456777777433 8
Q ss_pred HHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCC
Q 008796 338 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD 417 (553)
Q Consensus 338 ~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd 417 (553)
++|.++.+.. -+.|...+|.....+++|.+|.++++.++++- .+.-.+++++|.+.+..++
T Consensus 474 EkawElsn~~------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 474 EKAWELSNYI------------SARAQRSLALLILSNKDFSEADKHLERSLEIN-------PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HHHHHHhhhh------------hHHHHHhhccccccchhHHHHHHHHHHHhhcC-------ccchhHHHhccHHHHHHhh
Confidence 8888887766 23366777777888999999999999999994 3444688999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 418 TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 418 ~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
...|...|...+++. +.-..+-++|+.+|...|+..+|...+.++.+.
T Consensus 535 ~q~av~aF~rcvtL~------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred hHHHHHHHHHHhhcC------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 999999999998874 333446689999999999999999988887763
No 146
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.96 E-value=0.034 Score=54.87 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=100.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHH
Q 008796 284 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 363 (553)
Q Consensus 284 ~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~a 363 (553)
+..||.....+|++.||..||.+|+ +|--.+.+..+..+|..-...|++..+.+-|+-..+.. +. ......
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qal--sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-pa------~r~pd~ 162 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQAL--SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-PA------FRSPDG 162 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHh--ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-Cc------cCCCCc
Confidence 3557888888999999999999996 44455667788889999999999888666666544431 11 112345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC
Q 008796 364 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 436 (553)
Q Consensus 364 L~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg 436 (553)
...+|-++..+|++..|...|+.++.-+. |. ++...-|+...++|+.++|..-+..-.+-+++..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp---g~-----~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~ 227 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP---GP-----QARIYYAEMLAKQGRLREANAQYVAVVDTAKRSR 227 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC---CH-----HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 67788999999999999999999988763 22 3344568888999999888877776666555543
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.96 E-value=0.013 Score=65.58 Aligned_cols=140 Identities=17% Similarity=0.175 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCH--------HHHHHHHH
Q 008796 314 KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDF--------QEARNRLA 385 (553)
Q Consensus 314 ~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~--------~EA~~~L~ 385 (553)
....|+-+.--|.-|+..++.+...+|.+++++.-...- + -|.++-.++.+|.....+ .+|.+.++
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP---~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP---D---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC---C---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345777777788888888887777777777766532210 1 244555555555544322 23333333
Q ss_pred HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 386 KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 386 eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
+++.+- .+ ...+.++..+|.++...|++++|..++++|+.+- +. +.++..+|.++...|++++|.+.+
T Consensus 409 ~a~al~----~~-~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----ps--~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 409 NIVALP----EL-NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-----MS--WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred Hhhhcc----cC-cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CC--HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 333321 12 2235677788999999999999999999999986 12 468899999999999999999999
Q ss_pred HHHHHH
Q 008796 466 EYRRKK 471 (553)
Q Consensus 466 e~a~~~ 471 (553)
+++..+
T Consensus 477 ~~A~~L 482 (517)
T PRK10153 477 STAFNL 482 (517)
T ss_pred HHHHhc
Confidence 888664
No 148
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.38 Score=49.08 Aligned_cols=188 Identities=15% Similarity=0.124 Sum_probs=124.5
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHccchhhHH---HHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-GCYSEAAFHYVEAAKITESKSMQA---MCHAYAA 325 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~al-G~yeeAl~~f~~AL~l~~d~~g~A---~aL~NLA 325 (553)
...+++.+|+..+..|++||...|.. ...|.-|..+|.++..- .+++.|..||++|.+-+..-...+ .|+.-.|
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf--~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRF--TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHH--HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 45679999999999999999999995 33688889999999886 899999999999988765533333 3333333
Q ss_pred HHHHHhCChHHHHHHHHhhccccccc-ccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHH
Q 008796 326 VSYFCIGDAESSSQAIDLIGPVYQMK-DTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 404 (553)
Q Consensus 326 ~vyl~~Gd~e~~~qAL~L~r~lgd~~-g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~a 404 (553)
..- +..+++++|.+++..+.... ++..-....=.-++.-|++|+..++.-.|.+.+++-..+.= ..-+ ..++.-
T Consensus 162 ~ya---a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP-~F~d-sREckf 236 (288)
T KOG1586|consen 162 QYA---AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP-AFTD-SRECKF 236 (288)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC-cccc-cHHHHH
Confidence 332 33445888888877764432 11111122234466778999998998888888877777752 3334 667777
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 008796 405 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTAL 451 (553)
Q Consensus 405 L~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~l 451 (553)
|--|....-... .+.+..++.-...+. +.-.|..+.|-++
T Consensus 237 lk~L~~aieE~d-----~e~fte~vkefDsis--rLD~W~ttiLlki 276 (288)
T KOG1586|consen 237 LKDLLDAIEEQD-----IEKFTEVVKEFDSIS--RLDQWKTTILLKI 276 (288)
T ss_pred HHHHHHHHhhhh-----HHHHHHHHHhhhccc--hHHHHHHHHHHHH
Confidence 777766553332 456666665555543 2224555555444
No 149
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.89 E-value=0.0047 Score=53.33 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHH
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 412 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~ 412 (553)
.-+.++.++|.++...|++++|...+++|+++++ +.+|+...+.++..+..+.
T Consensus 39 ~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar-e~~D~~~l~~al~~~~~l~ 91 (94)
T PF12862_consen 39 GLAYALLNLAELHRRFGHYEEALQALEEAIRLAR-ENGDRRCLAYALSWLANLL 91 (94)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999996 8999999999999888764
No 150
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.89 E-value=0.27 Score=43.21 Aligned_cols=207 Identities=20% Similarity=0.150 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008796 173 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 252 (553)
Q Consensus 173 ~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~ 252 (553)
.....+..........|.++++......++.. ..... ....+..++.+....
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--------------------~~~~~~~~~~~~~~~ 108 (291)
T COG0457 57 DLAGLLLLLALALLKLGRLEEALELLEKALEL--------ELLPN--------------------LAEALLNLGLLLEAL 108 (291)
T ss_pred cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------hhccc--------------------hHHHHHHHHHHHHHH
Confidence 45566677777888888888888888777764 00011 223345566666777
Q ss_pred CCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHh
Q 008796 253 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQ-YAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~-~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~ 331 (553)
+.+.+|++.+..++........ .....+. .+...|+++.|...|.+++.........+......+..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDL--------AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcch--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh
Confidence 7788888888777776544311 2333333 788899999999999999762221134555555555667777
Q ss_pred CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHH
Q 008796 332 GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTI 407 (553)
Q Consensus 332 Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~ 407 (553)
|+++. +.+++...... ...++..+|..+...|++.+|...+.+++.... . .+..+..
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~------~~~~~~~ 241 (291)
T COG0457 181 GRYEEALELLEKALKLNPDD------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDP-D------NAEALYN 241 (291)
T ss_pred cCHHHHHHHHHHHHhhCccc------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc-c------cHHHHhh
Confidence 77665 44444443331 246778899999999999999999999999963 2 5567778
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHH
Q 008796 408 LGNLALALHDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 408 LG~i~lalGd~~eA~~~l~~AL~LArk 434 (553)
++.++...|+..+|...+..++.....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888777889999998888877654
No 151
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.029 Score=60.49 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCCh-HHHHHHHHhhcccccccccccc
Q 008796 278 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA-ESSSQAIDLIGPVYQMKDTING 356 (553)
Q Consensus 278 ~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~-e~~~qAL~L~r~lgd~~g~~~~ 356 (553)
...|.....-|.++...|+|..|...|..|+....... +.. ++-..++++
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~----------------~~~~ee~~~~~~~------------- 255 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR----------------SFDEEEQKKAEAL------------- 255 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc----------------cCCHHHHHHHHHH-------------
Confidence 34566667778889999999999999998887554311 111 112222111
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 357 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
+-.++.|++.++..+++|.+|+..+.++|++- -+| .-+|++=|.+++..|+++.|++.++.|+.+-
T Consensus 256 ---k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N----~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 256 ---KLACHLNLAACYLKLKEYKEAIESCNKVLELD---PNN----VKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred ---HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCc----hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 45677888888888888888888888888882 344 4678888888888888888888888888774
No 152
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=1.2 Score=50.45 Aligned_cols=380 Identities=14% Similarity=0.066 Sum_probs=206.5
Q ss_pred CCchHHHHHHHHhhHHhhhcCcccc----------------------cccc----hHHHHHHHHHHHHHHHhccccchhh
Q 008796 16 DDENSVLRSINQCDRVWESIDPNRR----------------------GQCL----GLLFYNELLHIFYRLRICDYKNAAH 69 (553)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~----~~~~~~~~~~~~~~~~~c~~~~~~~ 69 (553)
..+.-.++||..|+.|-..-|.+.- +-.+ +..|+=|=.++||+|
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl---------- 92 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL---------- 92 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc----------
Confidence 3456788999999998877654421 1122 333334667788876
Q ss_pred hhhhHHHHHHHHH---HHhHHHHHHH----------HHHHHHHhhcCC---CCCChhhhhhhhhhHHHHHHHHHhcccCC
Q 008796 70 HVDNLDAAMKADK---QKMQEIQQLS----------SELDALNQSLSR---PDLPSRERSALAGRQAKLQQRLRSLEDSS 133 (553)
Q Consensus 70 ~~~~ld~~~~~~~---~~~~~~~~l~----------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (553)
.++|.|++... +...-+++|. .|-=.+=+-|-+ ++..+..|..|......++-|+.+
T Consensus 93 --nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q----- 165 (652)
T KOG2376|consen 93 --NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ----- 165 (652)
T ss_pred --ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH-----
Confidence 45666665541 0001122222 222223344533 444556678888888888776544
Q ss_pred CccccccccccccccccccccccccCCCCCCccccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 008796 134 LTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLG 213 (553)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG 213 (553)
.. +. .| +..+-+ ++.+....-..|+|.+|++..++|++++.+-+.. +
T Consensus 166 ---------~v------------~~-v~---------e~syel-~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~-~ 212 (652)
T KOG2376|consen 166 ---------SV------------PE-VP---------EDSYEL-LYNTACILIENGKYNQAIELLEKALRICREKLED-E 212 (652)
T ss_pred ---------hc------------cC-CC---------cchHHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc-c
Confidence 00 00 11 112222 3355666677899999999999999998654332 2
Q ss_pred CCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHH
Q 008796 214 ITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS 293 (553)
Q Consensus 214 ~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~a 293 (553)
+.. |-+.... + ..+--.|+.+...+|+-+||...|...+..- .+| ....|.+-|+|--+-..
T Consensus 213 d~~---eEeie~e-l----------~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~--~~D--~~~~Av~~NNLva~~~d 274 (652)
T KOG2376|consen 213 DTN---EEEIEEE-L----------NPIRVQLAYVLQLQGQTAEASSIYVDIIKRN--PAD--EPSLAVAVNNLVALSKD 274 (652)
T ss_pred ccc---hhhHHHH-H----------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCC--chHHHHHhcchhhhccc
Confidence 221 1111111 1 1223457888899999999999888766532 233 12244555555433332
Q ss_pred cCCHH-HHH--------HHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH-------------------HHHHHHh--
Q 008796 294 VGCYS-EAA--------FHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-------------------SSQAIDL-- 343 (553)
Q Consensus 294 lG~ye-eAl--------~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~-------------------~~qAL~L-- 343 (553)
..-++ .++ ..-...+..+.....+++..++ +..-+-.+.-++ +.++...
T Consensus 275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~-~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN-ALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVR 353 (652)
T ss_pred cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHH
Confidence 22222 011 1111122222222333332222 222211121111 1111111
Q ss_pred ----------hcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hccChHhHHHHHHHHHH
Q 008796 344 ----------IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN---HMGNLQLVSQYLTILGN 410 (553)
Q Consensus 344 ----------~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~---elGdr~leA~aL~~LG~ 410 (553)
+....+. ..-+...++...+.++..+|++..|.+.++.-+....- +.++..++..+ +=.
T Consensus 354 ~~~~~ka~e~L~~~~~~-----~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a---iv~ 425 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADG-----HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA---IVA 425 (652)
T ss_pred HHHHhhhHHHHHHHhcc-----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH---HHH
Confidence 1111111 11113568888999999999999999999955432211 34444444443 334
Q ss_pred HHHHCCChHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 411 LALALHDTVQAREILRSSLTLAKKLYDIPT-QIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 411 i~lalGd~~eA~~~l~~AL~LArklgD~~~-qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
.+...++.+.|.+.+.+|+.+.++...-.. .......++......|+-++|...++.-.++.
T Consensus 426 l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 426 LYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 577888889999999999999988754333 33333555666667799999999888877743
No 153
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.21 Score=51.31 Aligned_cols=168 Identities=16% Similarity=0.181 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
..++|....+.+..|+.+-|..++.+...-| |. -.++-.+=|+...+.|++++|.++|..= +.+|+...+
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~-----S~RV~~lkam~lEa~~~~~~A~e~y~~l--L~ddpt~~v 121 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PG-----SKRVGKLKAMLLEATGNYKEAIEYYESL--LEDDPTDTV 121 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CC-----ChhHHHHHHHHHHHhhchhhHHHHHHHH--hccCcchhH
Confidence 4567888999999999999999999766554 44 1335667788889999999999999843 345566666
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh
Q 008796 319 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 398 (553)
Q Consensus 319 ~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr 398 (553)
.=-.-+|++... |..-++-+.|.-+-+. +.. -..+|.-++.+|+..|+|..|.=||++.+=+.
T Consensus 122 ~~KRKlAilka~-GK~l~aIk~ln~YL~~------F~~---D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~------- 184 (289)
T KOG3060|consen 122 IRKRKLAILKAQ-GKNLEAIKELNEYLDK------FMN---DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ------- 184 (289)
T ss_pred HHHHHHHHHHHc-CCcHHHHHHHHHHHHH------hcC---cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-------
Confidence 656777766644 6654422222221111 111 35789999999999999999999999998762
Q ss_pred HhHHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHH
Q 008796 399 QLVSQYLTILGNLALALH---DTVQAREILRSSLTLAK 433 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalG---d~~eA~~~l~~AL~LAr 433 (553)
.........||+++..+| +..-|+.+|.+||.+..
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 222234556777777666 56679999999999976
No 154
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.08 Score=58.47 Aligned_cols=279 Identities=15% Similarity=0.089 Sum_probs=160.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 008796 183 ILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEAL 262 (553)
Q Consensus 183 ~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l 262 (553)
..+..-|.|.-+..++.+||+-+..+++. |..+...-.= +.+. .+.+|.|.|..++..||+-.|.++|
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~-g~~~~~~~tl---s~nk--------s~eilYNcG~~~Lh~grPl~AfqCf 358 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRN-GLKPAKTFTL---SQNK--------SMEILYNCGLLYLHSGRPLLAFQCF 358 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhc-cCCCCcceeh---hccc--------chhhHHhhhHHHHhcCCcHHHHHHH
Confidence 33456688999999999999733333333 5444311100 1121 6788999999999999999999999
Q ss_pred HHHHHHHHHCCc-hhhhhHHHHHHHHHHHHH-HcCCHHHHHHHH-------HHHH--------HHccc-------hhhHH
Q 008796 263 VQMKNWFIRFPT-ILQACESMIEMLRGQYAH-SVGCYSEAAFHY-------VEAA--------KITES-------KSMQA 318 (553)
Q Consensus 263 ~qAL~L~r~~~d-l~~~~~A~~~~lLG~~~~-alG~yeeAl~~f-------~~AL--------~l~~d-------~~g~A 318 (553)
..|...|++.|. .++..++.+-.+-|-... -.+-.++..--- ++-+ ...++ ..-.+
T Consensus 359 ~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~ 438 (696)
T KOG2471|consen 359 QKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFAR 438 (696)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHH
Confidence 999999999999 333334333333222211 111111100000 0000 00000 00133
Q ss_pred HHHHHHHHHHHHhCChHH-HHHHHHhhccccccc--------------cc------------ccchh-HHHHHHHHHHHH
Q 008796 319 MCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMK--------------DT------------INGVR-EEASLHFAYGLL 370 (553)
Q Consensus 319 ~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~--------------g~------------~~~lr-~eA~aL~~LG~~ 370 (553)
.|+.|.=...-..-++.. +.-|..-.++.+.+. |+ ..++. -++..+-++++|
T Consensus 439 vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV 518 (696)
T KOG2471|consen 439 VCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYV 518 (696)
T ss_pred HHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 455442221111111111 333333222111110 00 01111 147888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHH-----CCChHHHHHHHHH------HHHHHH---HhC
Q 008796 371 LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA-----LHDTVQAREILRS------SLTLAK---KLY 436 (553)
Q Consensus 371 ~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~la-----lGd~~eA~~~l~~------AL~LAr---klg 436 (553)
-+..|++-.|+.+-.+-|...+ +.+ ++..||++|.+ +.++.+|.+++.+ .+.+.- +.+
T Consensus 519 ~L~Lgd~i~AL~~a~kLLq~~~--lS~------~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~ 590 (696)
T KOG2471|consen 519 ELELGDPIKALSAATKLLQLAD--LSK------IYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFD 590 (696)
T ss_pred HHHhcChhhHHHHHHHHHhhhh--hhh------HHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhh
Confidence 9999999999999998888863 333 67778877754 6788999998877 332210 000
Q ss_pred -------------C----------hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhHHHH
Q 008796 437 -------------D----------IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLAD 481 (553)
Q Consensus 437 -------------D----------~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~~~~~ 481 (553)
. ...+...+.+||.++.-+|++++|......+..+.-++-+..+.
T Consensus 591 ~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~ 658 (696)
T KOG2471|consen 591 QWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQAT 658 (696)
T ss_pred hhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHH
Confidence 0 12344567899999999999999999988877776655554443
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.0067 Score=63.02 Aligned_cols=113 Identities=13% Similarity=0.083 Sum_probs=88.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 008796 182 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 261 (553)
Q Consensus 182 v~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~ 261 (553)
+--.+..++|.+|...|++|++. .+. . .|| .+|-+.++...|+|+.|++.
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l----------~P~--------n-----AVy-------ycNRAAAy~~Lg~~~~AVkD 137 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL----------DPT--------N-----AVY-------YCNRAAAYSKLGEYEDAVKD 137 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc----------CCC--------c-----chH-------HHHHHHHHHHhcchHHHHHH
Confidence 44566777888888888888877 222 1 344 89999999999999999999
Q ss_pred HHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChH
Q 008796 262 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 335 (553)
Q Consensus 262 l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e 335 (553)
.+.|+.+- |. -+.++..||+++..+|+|++|++.|.+||.+-.+-. ....||.++-..+++..
T Consensus 138 ce~Al~iD---p~-----yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne---~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 138 CESALSID---PH-----YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE---SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhcC---hH-----HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH---HHHHHHHHHHHHhcCCC
Confidence 99999873 33 366889999999999999999999999998865533 55666777666665544
No 156
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.4 Score=55.96 Aligned_cols=386 Identities=13% Similarity=0.048 Sum_probs=224.0
Q ss_pred ccchHHHHHHHHHHHHHHHhccccchhhh---------hhhHHHHHHHHH-----------HHhHHH-HHH---------
Q 008796 42 QCLGLLFYNELLHIFYRLRICDYKNAAHH---------VDNLDAAMKADK-----------QKMQEI-QQL--------- 91 (553)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~---------~~~ld~~~~~~~-----------~~~~~~-~~l--------- 91 (553)
++.|-.+-..-|.=|--|--|| |.-.+- .-+.|+|.|+-. -+|-.- +.|
T Consensus 704 ~~i~~~~~~~pLrdFvgle~Cd-~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGh 782 (1416)
T KOG3617|consen 704 RTIGKTLVAKPLRDFVGLENCD-ESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGH 782 (1416)
T ss_pred cccchhhhhhhHHHhcCccccC-HHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhh
Confidence 4555555666666777777777 333322 235677776641 111000 111
Q ss_pred ---HHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhcccCCCcc-ccccccccccccccccccccccCCCCCCccc
Q 008796 92 ---SSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTG-KEFLEPSYFGNARQAWGDKLVLAPSPMDGEW 167 (553)
Q Consensus 92 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 167 (553)
..--.+|.+.-+.++-.+-+-+.|.-..++|.+-+.- -.-|. +|-||.+| -...+ |.+-+.++++..-.+
T Consensus 783 m~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~l---Yr~ckR~DLlNKly-Qs~g~-w~eA~eiAE~~DRiH- 856 (1416)
T KOG3617|consen 783 MKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALIL---YRQCKRYDLLNKLY-QSQGM-WSEAFEIAETKDRIH- 856 (1416)
T ss_pred hhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHH-Hhccc-HHHHHHHHhhcccee-
Confidence 1112345566666655555555666666665543321 00122 56666655 33334 888888888865432
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008796 168 LPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVA 247 (553)
Q Consensus 168 Lp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~ 247 (553)
+ -=.|+--+-+.+.+++.+.|.+||+|+-.+..+.-+-|...++.-| . + +-+.- .-.++.-.|.
T Consensus 857 -----L-r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e--~--Y---v~~~~---d~~L~~WWgq 920 (1416)
T KOG3617|consen 857 -----L-RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE--Q--Y---VRRKR---DESLYSWWGQ 920 (1416)
T ss_pred -----h-hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH--H--H---HHhcc---chHHHHHHHH
Confidence 1 1257778889999999999999999999887777777766655100 0 0 00000 0112222333
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHH-------------------CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 248 VELTRSGFVEAQEALVQMKNWFIR-------------------FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAA 308 (553)
Q Consensus 248 ~~l~~Gr~aeAl~~l~qAL~L~r~-------------------~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL 308 (553)
-.-..|+.+.|+.+|..|.++|-. .||+ .+.+.||..+...|++.+|...|.+|-
T Consensus 921 YlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~------AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDK------AACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccH------HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 345578888888888877766543 4442 256788888899999999999988654
Q ss_pred HHc------cchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHH
Q 008796 309 KIT------ESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARN 382 (553)
Q Consensus 309 ~l~------~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~ 382 (553)
... .+. +.-.-|.|++.. .|..+ .-.|-..+.+.|.. -.+|- .+|++.|-+.+|++
T Consensus 995 afsnAIRlcKEn-d~~d~L~nlal~---s~~~d-~v~aArYyEe~g~~-------~~~AV------mLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen 995 AFSNAIRLCKEN-DMKDRLANLALM---SGGSD-LVSAARYYEELGGY-------AHKAV------MLYHKAGMIGKALE 1056 (1416)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHhh---cCchh-HHHHHHHHHHcchh-------hhHHH------HHHHhhcchHHHHH
Confidence 322 111 111112222221 12211 11122223333211 00221 45666677777766
Q ss_pred HHH-----HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHH------HHHHHHHHHHh----------------
Q 008796 383 RLA-----KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI------LRSSLTLAKKL---------------- 435 (553)
Q Consensus 383 ~L~-----eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~------l~~AL~LArkl---------------- 435 (553)
..= .||+|.- +.-+.---+..|+.-++.+....+++.|.+. +..||.+++.-
T Consensus 1057 lAF~tqQf~aL~lIa-~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~K 1135 (1416)
T KOG3617|consen 1057 LAFRTQQFSALDLIA-KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTK 1135 (1416)
T ss_pred HHHhhcccHHHHHHH-HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCc
Confidence 543 3666663 4555555567788888888888888887754 67788886653
Q ss_pred -CChH--HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Q 008796 436 -YDIP--TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 475 (553)
Q Consensus 436 -gD~~--~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L 475 (553)
++.+ .....|..+|+....+|++..|-.-|.++.++...+
T Consensus 1136 d~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AM 1178 (1416)
T KOG3617|consen 1136 DDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAM 1178 (1416)
T ss_pred CCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHH
Confidence 2222 335678899999999999999999888887776543
No 157
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.73 E-value=0.0036 Score=44.57 Aligned_cols=35 Identities=29% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCCh
Q 008796 404 YLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 438 (553)
Q Consensus 404 aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~ 438 (553)
++.+||.+|..+|++++|+++|++||.+.++.+++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~~ 35 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPEDR 35 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-H
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCC
Confidence 57899999999999999999999999998887764
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.72 E-value=0.0096 Score=61.90 Aligned_cols=100 Identities=20% Similarity=0.162 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD 437 (553)
..+|..+-.-|.=++..++|++|+..|.+|+++. --| |-.+-+=+.+|..+|.+..|..-++.|+.+ ..
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~---P~n----AVyycNRAAAy~~Lg~~~~AVkDce~Al~i----Dp 146 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD---PTN----AVYYCNRAAAYSKLGEYEDAVKDCESALSI----DP 146 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCc----chHHHHHHHHHHHhcchHHHHHHHHHHHhc----Ch
Confidence 3467778888888888888888888888888874 122 344556777788888888888888888765 22
Q ss_pred hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 438 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 438 ~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
.+ ..++.-||.+|..+|++++|.+.|..++.
T Consensus 147 ~y--skay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 147 HY--SKAYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred HH--HHHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 33 34556678888888888888887666554
No 159
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.71 E-value=0.26 Score=56.24 Aligned_cols=193 Identities=17% Similarity=0.074 Sum_probs=111.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q 008796 246 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 325 (553)
Q Consensus 246 g~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA 325 (553)
+...+.+|+.++|++.+++++..|-.++. +.+.+|++...+++.+.|...|.+.++..-. -.-....|+
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~fp~f~K--------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~---~ipLWllLa 726 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSFPDFHK--------LWLMLGQIEEQMENIEMAREAYLQGTKKCPN---SIPLWLLLA 726 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhCCchHH--------HHHHHhHHHHHHHHHHHHHHHHHhccccCCC---CchHHHHHH
Confidence 34568889999999999999877544443 7889999999999999999999977764432 111122223
Q ss_pred HHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhH----
Q 008796 326 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV---- 401 (553)
Q Consensus 326 ~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~le---- 401 (553)
.+-...|..-..+.-|+..+ + ..+ .+ +.-|.-.=..-++.|..+.|.....+||.-+- ..|-...+
T Consensus 727 kleEk~~~~~rAR~ildrar-l-kNP---k~----~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-~sg~LWaEaI~l 796 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRAR-L-KNP---KN----ALLWLESIRMELRAGNKEQAELLMAKALQECP-SSGLLWAEAIWL 796 (913)
T ss_pred HHHHHhcchhhHHHHHHHHH-h-cCC---Cc----chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccchhHHHHHHh
Confidence 33333332211111111111 0 000 00 11111112223345556666665555554431 22221111
Q ss_pred --------------------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHH
Q 008796 402 --------------------SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE 461 (553)
Q Consensus 402 --------------------A~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A 461 (553)
.++|..+|..+++...++.|++.+.+|+.+....||.+. .+-..+...|.-+.-
T Consensus 797 e~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa------~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA------WFYKFELRHGTEEDQ 870 (913)
T ss_pred ccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH------HHHHHHHHhCCHHHH
Confidence 256788999999999999999999999998888877654 233445555644443
Q ss_pred HHHH
Q 008796 462 MEND 465 (553)
Q Consensus 462 ~e~~ 465 (553)
.+.+
T Consensus 871 kev~ 874 (913)
T KOG0495|consen 871 KEVL 874 (913)
T ss_pred HHHH
Confidence 3333
No 160
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.71 E-value=0.018 Score=59.88 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
++.++.++.+...|++++|.++..++ + ++ +... -.+.+++.++|+
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~---------------~----~l--------------E~~a--l~Vqi~L~~~R~ 147 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG---------------G----SL--------------ELLA--LAVQILLKMNRP 147 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT---------------T----CH--------------HHHH--HHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc---------------C----cc--------------cHHH--HHHHHHHHcCCH
Confidence 56778888888899999887766543 1 01 2221 245677999999
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCC
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG--CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 333 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG--~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd 333 (553)
+.|.+.+..+.++ ..|-. .+....+++..+.| .+.+|...|.+-. ...+.....++.+|.+++.+|+
T Consensus 148 dlA~k~l~~~~~~---~eD~~-----l~qLa~awv~l~~g~e~~~~A~y~f~El~---~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 148 DLAEKELKNMQQI---DEDSI-----LTQLAEAWVNLATGGEKYQDAFYIFEELS---DKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHHHHHHHCC---SCCHH-----HHHHHHHHHHHHHTTTCCCHHHHHHHHHH---CCS--SHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHhc---CCcHH-----HHHHHHHHHHHHhCchhHHHHHHHHHHHH---hccCCCHHHHHHHHHHHHHhCC
Confidence 9999988886554 34411 12223344555555 6999999999632 2223345778999999999999
Q ss_pred hHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 334 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 334 ~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
+++.+..|.-.-.. ++ ....++.|+..+...+|+..++.+.+..-|+-
T Consensus 217 ~~eAe~~L~~al~~-~~--------~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 217 YEEAEELLEEALEK-DP--------NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHCCC--C--------CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHh-cc--------CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99844443332222 11 14678999999999999995544444433443
No 161
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.70 E-value=0.25 Score=52.83 Aligned_cols=87 Identities=15% Similarity=0.107 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh-----
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS----- 315 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~----- 315 (553)
.+.--+.+++.+|+-.-|+..+.+.+++ -||.. -+..-.|.+...+|.+++|++-|..-|...-+.+
T Consensus 74 aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~-----~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 74 AIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFM-----AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred HHHHHHHHHhhhcCCccchhhHHHHHhc---CccHH-----HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 3456778889999999999999988876 57732 2455689999999999999999999887543311
Q ss_pred -------hHHHHHHHHHHHHHHhCChH
Q 008796 316 -------MQAMCHAYAAVSYFCIGDAE 335 (553)
Q Consensus 316 -------g~A~aL~NLA~vyl~~Gd~e 335 (553)
.+-..++.....+..-||..
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchh
Confidence 23344555556666666644
No 162
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.56 Score=48.19 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 311 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~ 311 (553)
+.+.-+.++...-.|++|-..+..|.+-++.+..++. .+-.+-..|.....+..+.|+..+|++|..+.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh--AAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH--AAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3456666778888999999999999998888777644 67788889999999999999999999887543
No 163
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.67 E-value=0.004 Score=44.37 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 398 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr 398 (553)
++.++|.+|..+|+|++|.++|+++|.+.. +.+++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~-~~~~~ 35 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR-DPEDR 35 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH-HCT-H
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-cccCC
Confidence 578999999999999999999999999974 56553
No 164
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.65 E-value=0.46 Score=54.31 Aligned_cols=257 Identities=13% Similarity=0.090 Sum_probs=151.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-------c-----ccccchhhHHHHHHHHHHHH------
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDG-------V-----REVDLQHSAIWMAGVYLMLL------ 238 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~-------~-----~e~~l~~~~~~~a~vy~~L~------ 238 (553)
+|+...-.-..+|+.+...|...+|+.- +.+-|..-. . .-..+++++ .|+..|.
T Consensus 442 IWitaa~LEE~ngn~~mv~kii~rgl~~----L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA----Ii~avigigvEee 513 (913)
T KOG0495|consen 442 IWITAAKLEEANGNVDMVEKIIDRGLSE----LQANGVEINRDQWLKEAEACEDAGSVITCQA----IIRAVIGIGVEEE 513 (913)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH----HhhcceeecHHHHHHHHHHHhhcCChhhHHH----HHHHHHhhccccc
Confidence 4556677788999999999999999988 555553322 0 000111121 1121111
Q ss_pred --HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh-
Q 008796 239 --MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS- 315 (553)
Q Consensus 239 --a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~- 315 (553)
-....+=+.....++-+.-|...|..|+.+| |.. -.+.-.....-.+-|..++-.+.|++|+.......
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvf---p~k-----~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~ 585 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVF---PCK-----KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEI 585 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc---cch-----hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchh
Confidence 1122333334445555666666666666654 331 11233334444556666777777777776443211
Q ss_pred -------------hHHHHHHHHHHHHHHhCChH--------------HHHHHHHhhcccccccccccchhHHHHHHHHHH
Q 008796 316 -------------MQAMCHAYAAVSYFCIGDAE--------------SSSQAIDLIGPVYQMKDTINGVREEASLHFAYG 368 (553)
Q Consensus 316 -------------g~A~aL~NLA~vyl~~Gd~e--------------~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG 368 (553)
....+.+-|+.++...++.+ ++++|-.++...... -+-..++.-..
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-------sgTeRv~mKs~ 658 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-------SGTERVWMKSA 658 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-------CCcchhhHHHh
Confidence 12233444444444444333 266666666554211 12457788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008796 369 LLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVL 448 (553)
Q Consensus 369 ~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~L 448 (553)
.+-..+|..+||++++++||+.+ .+.+ -....+|.|+...++.+.|++.|.+.+..+-...- .| ..|
T Consensus 659 ~~er~ld~~eeA~rllEe~lk~f--p~f~-----Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip----LW--llL 725 (913)
T KOG0495|consen 659 NLERYLDNVEEALRLLEEALKSF--PDFH-----KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP----LW--LLL 725 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC--CchH-----HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch----HH--HHH
Confidence 88889999999999999999997 2444 24557999999999999999999888765432221 22 346
Q ss_pred HHHHHHcCCchHHHHHHHHHH
Q 008796 449 TALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 449 g~ly~alGd~~~A~e~~e~a~ 469 (553)
+++-...|.+-+|+..++++.
T Consensus 726 akleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHH
Confidence 666667777777766655543
No 165
>PLN02789 farnesyltranstransferase
Probab=96.64 E-value=0.14 Score=54.13 Aligned_cols=187 Identities=6% Similarity=-0.075 Sum_probs=120.0
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 328 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG-~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vy 328 (553)
...+++.+|+..+.+++++ .|+ -.++.+..|.+...+| .+++|+..+.+++..... -..+.++.+++.
T Consensus 48 ~~~e~serAL~lt~~aI~l---nP~-----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~~R~~~l 116 (320)
T PLN02789 48 ASDERSPRALDLTADVIRL---NPG-----NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWHHRRWLA 116 (320)
T ss_pred HcCCCCHHHHHHHHHHHHH---Cch-----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhHHHHHHH
Confidence 4567889999999999877 444 2457888888888888 689999999988865433 223467777777
Q ss_pred HHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHH
Q 008796 329 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 408 (553)
Q Consensus 329 l~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~L 408 (553)
...|+.. +..+++.+....... . .-..+++..|.+....|++++|+.++.+++++- ..| ..+.+..
T Consensus 117 ~~l~~~~-~~~el~~~~kal~~d----p--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N----~sAW~~R 182 (320)
T PLN02789 117 EKLGPDA-ANKELEFTRKILSLD----A--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRN----NSAWNQR 182 (320)
T ss_pred HHcCchh-hHHHHHHHHHHHHhC----c--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCc----hhHHHHH
Confidence 7777631 122233322211000 0 035799999999999999999999999999883 233 3467777
Q ss_pred HHHHHHC---CCh----HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc----CCchHHHHHHHH
Q 008796 409 GNLALAL---HDT----VQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL----GDRGNEMENDEY 467 (553)
Q Consensus 409 G~i~lal---Gd~----~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~al----Gd~~~A~e~~e~ 467 (553)
|.+.... |.. +++.++...++.+.-.- ..+.+.++-++... +...+|.+....
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILANPRN------ESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhCCCC------cCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 7776665 323 34666666666553211 22345666666663 334445544433
No 166
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.074 Score=57.41 Aligned_cols=175 Identities=16% Similarity=0.029 Sum_probs=116.5
Q ss_pred ccccccccccccCCCCCCccccchhh-HHHHHHH--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc-CCCCCccccc
Q 008796 147 NARQAWGDKLVLAPSPMDGEWLPKSA-VYALVDL--MVVILGRPKGLFKECMQRIQSGMQTIQDALLKL-GITDGVREVD 222 (553)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~WLp~~~-~~~Lv~l--~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~kl-G~~~~~~e~~ 222 (553)
|+.-.|.=.|..-.++-+..|.--.. ..-.+.. ..+.++...|+|..|...|++|+.. +.-- +.++.
T Consensus 177 nA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~----l~~~~~~~~e----- 247 (397)
T KOG0543|consen 177 NATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSF----LEYRRSFDEE----- 247 (397)
T ss_pred CceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHH----hhccccCCHH-----
Confidence 44444444444444445556876665 3333333 4566899999999999999999999 4422 22221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008796 223 LQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAF 302 (553)
Q Consensus 223 l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~ 302 (553)
......-++...+.||+.|++.+.+|.+|++.-.++|++=-.+ .-+++..|.++..+|.|+.|..
T Consensus 248 -------e~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--------~KALyRrG~A~l~~~e~~~A~~ 312 (397)
T KOG0543|consen 248 -------EQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN--------VKALYRRGQALLALGEYDLARD 312 (397)
T ss_pred -------HHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--------hhHHHHHHHHHHhhccHHHHHH
Confidence 1133445688999999999999999999999999988873222 3378889999999999999999
Q ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH--HHHHHHhhc
Q 008796 303 HYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES--SSQAIDLIG 345 (553)
Q Consensus 303 ~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~--~~qAL~L~r 345 (553)
.|++|++.--+......-+.-+..-+...-+.+. |...+....
T Consensus 313 df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 313 DFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999998876544333333333333333222222 555555444
No 167
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.58 E-value=0.024 Score=58.22 Aligned_cols=84 Identities=17% Similarity=0.127 Sum_probs=72.4
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 329 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl 329 (553)
+..|+|++|+..|...++. +|+ ....+.+++.+|.++...|+|++|...|...++.+.+......++..+|.+|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~---yP~--s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK---YPD--STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH---CcC--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 4469999999998877765 466 23357799999999999999999999999999999888888999999999999
Q ss_pred HhCChHHHH
Q 008796 330 CIGDAESSS 338 (553)
Q Consensus 330 ~~Gd~e~~~ 338 (553)
..|++++..
T Consensus 229 ~~g~~~~A~ 237 (263)
T PRK10803 229 DKGDTAKAK 237 (263)
T ss_pred HcCCHHHHH
Confidence 999988733
No 168
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.56 E-value=0.005 Score=43.78 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
|.+++++|.+|..+|++++|+.++++++++.++-.|.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~ 38 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGP 38 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcc
Confidence 6789999999999999999999999999998643354
No 169
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.54 E-value=0.06 Score=64.97 Aligned_cols=187 Identities=18% Similarity=0.124 Sum_probs=146.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----hhhH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-----KSMQ 317 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-----~~g~ 317 (553)
..-+...+-.|.+.+|.+ +.+++.++...=..+....+..++.+...+..+|++++|......|.-+.+. ....
T Consensus 936 ~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 345566677899999999 9999999986433345557889999999999999999999999988765543 3457
Q ss_pred HHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
...+.|++........... +.+|+.+..=.... -+.. -|....+++.+.+-.++++.|.++++.|+++...
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge---~hP~--~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE---DHPP--TALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC---CCCc--hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 7888888887777665333 77777764433211 0121 5778899999999999999999999999999877
Q ss_pred hccChHh-HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 008796 394 HMGNLQL-VSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 435 (553)
Q Consensus 394 elGdr~l-eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl 435 (553)
-.|+... .+.+...++.++-+.|+.+.|..+.+.+..+.++.
T Consensus 1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHh
Confidence 7775444 48888899999999999999999999999887765
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=96.50 E-value=0.017 Score=55.54 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.-...+..|.-.+.+|++++|...|+=- -+. ...| ......||.++...|++.+|.+.|.-|..+...-+.+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L-~~~--d~~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p- 107 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFL-CIY--DFYN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP- 107 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh--CcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-
Confidence 4678899999999999999999999754 333 2344 3467899999999999999999999999887544433
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhHHHHhhcchhhHHHHhhhcchhh
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISKVKLEVQ 500 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~~~~~A~~~~~h~~l~~~~~~~~~ 500 (553)
..-.|..|..+|+..+|+.+|+.+.. .|+|..|-+|...-+.
T Consensus 108 -----~f~agqC~l~l~~~~~A~~~f~~a~~--------------~~~~~~l~~~A~~~L~ 149 (165)
T PRK15331 108 -----VFFTGQCQLLMRKAAKARQCFELVNE--------------RTEDESLRAKALVYLE 149 (165)
T ss_pred -----cchHHHHHHHhCCHHHHHHHHHHHHh--------------CcchHHHHHHHHHHHH
Confidence 34678999999999999999887766 4678877777655443
No 171
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.50 E-value=0.021 Score=57.00 Aligned_cols=98 Identities=23% Similarity=0.207 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHHHHHHc----cchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHH
Q 008796 294 VGCYSEAAFHYVEAAKIT----ESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHF 365 (553)
Q Consensus 294 lG~yeeAl~~f~~AL~l~----~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~ 365 (553)
...+++|.+.|.-|+--+ .+..-.|.....+||+|...|+.+. +.+|++.+.+.+........--.++..++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 457778888887777633 2355789999999999999999665 89999998876544322122234788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 366 AYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 366 ~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
-+|.++.+.|++++|++.+.+.+..-
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999988764
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.018 Score=59.88 Aligned_cols=99 Identities=25% Similarity=0.194 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHHHhCC
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH---DTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG---d~~eA~~~l~~AL~LArklgD 437 (553)
+.-|..||-+|+.+|+++.|...|++|+++. |+ -...+..+|+++..+. +..++.+++++||.+
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~------ 222 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLA----GD---NPEILLGLAEALYYQAGQQMTAKARALLRQALAL------ 222 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc------
Confidence 5789999999999999999999999999995 33 2346667888777665 567899999999976
Q ss_pred hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 438 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 438 ~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
.+....++..|+..+...|++++|...++.-++..
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 46677899999999999999999999888776543
No 173
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.39 E-value=0.0073 Score=41.72 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
|.+++++|.++..+|++++|+.+|++||++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 5689999999999999999999999999983
No 174
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.39 E-value=0.27 Score=45.40 Aligned_cols=116 Identities=12% Similarity=0.140 Sum_probs=86.2
Q ss_pred HHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHH----hccChHh-HHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 359 EEASLHFAY--GLLLMRQQDFQEARNRLAKGLQIAHN----HMGNLQL-VSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 359 ~eA~aL~~L--G~~~~~qGr~~EA~~~L~eAL~Lar~----elGdr~l-eA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
+.+.++..| |.-.+.-|-|++|..-+++|.++++. +..|.-+ -|-+...|+..+..+|+++++......||..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 344555554 56667788999999999999999852 2334333 4888999999999999999999999999999
Q ss_pred HHHhCCh---HHHHHHHHHHH--HHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 432 AKKLYDI---PTQIWALSVLT--ALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 432 ArklgD~---~~qa~aL~~Lg--~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
+++-|+. .+..|...... .+...+|++++|+..|+++..+..+
T Consensus 85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 9988774 46667665554 4678999999999999998877654
No 175
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.32 E-value=0.14 Score=60.65 Aligned_cols=192 Identities=13% Similarity=0.012 Sum_probs=124.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHH
Q 008796 247 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAV 326 (553)
Q Consensus 247 ~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~ 326 (553)
+--.++.+...|+.++-+|+++- +. .|-+...+|+|++-.-++-.|...|..|.++-. +.+.+--.++.
T Consensus 466 a~~~~rK~~~~al~ali~alrld---~~-----~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa---tdaeaaaa~ad 534 (1238)
T KOG1127|consen 466 ALGCMRKNSALALHALIRALRLD---VS-----LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA---TDAEAAAASAD 534 (1238)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcc---cc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhhhhHHHHHH
Confidence 33345566778888888887763 22 355888999999998899999999998876532 33444445566
Q ss_pred HHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHH
Q 008796 327 SYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 406 (553)
Q Consensus 327 vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~ 406 (553)
+|.+.-+.+. |+++.-..+ +.....-.-..|...|..|..-+++..|...++.||+..= -| -.+..
T Consensus 535 tyae~~~we~---a~~I~l~~~----qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP---kD----~n~W~ 600 (1238)
T KOG1127|consen 535 TYAEESTWEE---AFEICLRAA----QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP---KD----YNLWL 600 (1238)
T ss_pred HhhccccHHH---HHHHHHHHh----hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc---hh----HHHHH
Confidence 7766555554 222211110 0011111334555689999999999999999999988752 12 23566
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 407 ILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 407 ~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
.||++|.+.|++..|...+.+|-.+ ++.-..+-.--+-+....|.+.+|.+.++.-.
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKASLL------RPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhHhc------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7999999999998888888777555 22223333444455566677777766665443
No 176
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.31 E-value=0.42 Score=53.83 Aligned_cols=190 Identities=18% Similarity=0.138 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH-H
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA-M 319 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A-~ 319 (553)
++..|+..+-..|++++|++++.+|++. .|+. .-.++.-|.++...|++.+|......|..+- ..- +
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~-----~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD----~~DRy 263 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTL-----VELYMTKARILKHAGDLKEAAEAMDEARELD----LADRY 263 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC----hhhHH
Confidence 5567888899999999999999999987 4552 4488999999999999999999999765542 222 4
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 320 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAY--GLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~L--G~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
.++-.+-..++.|+.++...-+.+|...+. +...++.+-=..||-+ |.+|.++|++..|+..|...++++. +.-+
T Consensus 264 iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~-~~~~ 340 (517)
T PF12569_consen 264 INSKCAKYLLRAGRIEEAEKTASLFTREDV--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD-DFEE 340 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCCC--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHhc
Confidence 445556667888998887777777766543 2234555454556554 9999999999999999999999985 4444
Q ss_pred hHhH--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC
Q 008796 398 LQLV--SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD 457 (553)
Q Consensus 398 r~le--A~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd 457 (553)
-+.- ..++..+ - ...|-.-|.+-.++.+.+.=..+....-++|..+=|
T Consensus 341 DQfDFH~Yc~RK~--------t----~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d 390 (517)
T PF12569_consen 341 DQFDFHSYCLRKM--------T----LRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHD 390 (517)
T ss_pred ccccHHHHHHhhc--------c----HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhc
Confidence 2322 2222211 1 233445566666666666655666666666555433
No 177
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.29 E-value=1.1 Score=46.08 Aligned_cols=169 Identities=18% Similarity=0.112 Sum_probs=113.3
Q ss_pred HHhhCCHHHHHHHHHHHHHHH-HHCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHccc-----------hh
Q 008796 249 ELTRSGFVEAQEALVQMKNWF-IRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKITES-----------KS 315 (553)
Q Consensus 249 ~l~~Gr~aeAl~~l~qAL~L~-r~~~dl~~~~~A~~~~lLG~~~~alG-~yeeAl~~f~~AL~l~~d-----------~~ 315 (553)
.+.+|+++.|...+.++-.+. ...|+. ....+.+.++.|.-....+ +|++|...+++|.++... ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~-~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM-AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHH-HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 378999999999999999998 555664 4568999999999999999 999999999999998522 23
Q ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHh
Q 008796 316 MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL-MRQQDFQEARNRLAKGLQIAHNH 394 (553)
Q Consensus 316 g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~-~~qGr~~EA~~~L~eAL~Lar~e 394 (553)
....++..++.+|+..++++...+|...++.+..-.++..++ +.+..-. ...++.+++.+.+.+.+.-..
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~-------~~L~l~il~~~~~~~~~~~~L~~mi~~~~-- 152 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV-------FLLKLEILLKSFDEEEYEEILMRMIRSVD-- 152 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH-------HHHHHHHHhccCChhHHHHHHHHHHHhcc--
Confidence 588999999999999999888555555544431111111121 2222211 226899999999998877652
Q ss_pred ccChHhHHHHHHHHHHH-HHHCCChHHHHHHHHHHHHH
Q 008796 395 MGNLQLVSQYLTILGNL-ALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 395 lGdr~leA~aL~~LG~i-~lalGd~~eA~~~l~~AL~L 431 (553)
..+ +..-..+..+ .+....+..|...+...+.-
T Consensus 153 ~~e----~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 153 HSE----SNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred ccc----chHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 111 1111222332 11223445667777666654
No 178
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.25 E-value=0.2 Score=55.19 Aligned_cols=113 Identities=18% Similarity=0.019 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
++-.+-+.+..++..+|++.++.|+.+ .|+ ...+-.++|..+...|++.+|.......+... ..-...+
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~-----~~~l~~~~a~all~~g~~~eai~~L~~~~~~~---p~dp~~w 411 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALAL---DPN-----SPLLQLNLAQALLKGGKPQEAIRILNRYLFND---PEDPNGW 411 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-----ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CCCchHH
Confidence 455566666666666666666666654 333 13345566666666666666666665444322 1222334
Q ss_pred HHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 322 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
..||..|-.+|+ .+.++-..+..+...|++++|+..+.+|.+..
T Consensus 412 ~~LAqay~~~g~--------------------------~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 412 DLLAQAYAELGN--------------------------RAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhCc--------------------------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 455555555444 23344455566667777777777777776665
No 179
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.25 E-value=0.0099 Score=40.64 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
|.+++.+|.+++.+|++++|++++++++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 5689999999999999999999999999984
No 180
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.22 E-value=0.032 Score=61.26 Aligned_cols=71 Identities=8% Similarity=-0.085 Sum_probs=61.1
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
...+.+++++|.++..+|++++|+..+++|+++. ++...-..++.++|.+|..+|+.++|.++++++.+..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4557789999999999999999999999999984 3333333779999999999999999999999999873
No 181
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.21 E-value=0.19 Score=46.29 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=81.2
Q ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHccchh---------hHHHHHHHHHHHHHHhCChHH----HHHHHHhhc
Q 008796 281 SMIEMLRGQY--AHSVGCYSEAAFHYVEAAKITESKS---------MQAMCHAYAAVSYFCIGDAES----SSQAIDLIG 345 (553)
Q Consensus 281 A~~~~lLG~~--~~alG~yeeAl~~f~~AL~l~~d~~---------g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r 345 (553)
+.++..|+.. ...-|.|++|.+-++.|++..+... =-|+|+..|+-.+...|+|++ .+.||-.++
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 4444444443 3446899999999999999887622 378999999999999999998 677888887
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 346 PVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 346 ~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
+-|..+.+-+.+ =..+-++-|.+..-.|+.+||...|+.+-++..+.-|.
T Consensus 87 RRGEL~qdeGkl--WIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 87 RRGELHQDEGKL--WIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HH--TTSTHHHH--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hccccccccchh--HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 765554222222 14566888999999999999999999999998654443
No 182
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.20 E-value=0.011 Score=42.02 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 008796 401 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 435 (553)
Q Consensus 401 eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl 435 (553)
++.++++||.++..+|++++|..++++|+.+.+++
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999887
No 183
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.07 E-value=1.5 Score=43.54 Aligned_cols=180 Identities=15% Similarity=0.138 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHH---HHH---cCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQY---AHS---VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 328 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~---~~a---lG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vy 328 (553)
+.+=.+.+.+...+++++|-.+. ...++-..|.. ++. .+...+|...|..+++...
T Consensus 4 ~~~E~qql~~ik~wwkeNGk~li--~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~---------------- 65 (207)
T COG2976 4 YLEEQQQLEAIKDWWKENGKALI--VGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQ---------------- 65 (207)
T ss_pred hhhHHHHHHHHHHHHHHCCchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 44556788899999999998432 34455544444 333 3344467777776665432
Q ss_pred HHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHH
Q 008796 329 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 408 (553)
Q Consensus 329 l~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~L 408 (553)
.+.++....+-.+....+. +. --+.+...++......|++++|...|+.+|... .|-.+-+-+-.+|
T Consensus 66 --ak~~~~~~~~ekf~~~n~~------t~-Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t----~De~lk~l~~lRL 132 (207)
T COG2976 66 --AKKPKSIAAAEKFVQANGK------TI-YAVLAALELAKAEVEANNLDKAEAQLKQALAQT----KDENLKALAALRL 132 (207)
T ss_pred --cCCchhHHHHHHHHhhccc------cH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc----hhHHHHHHHHHHH
Confidence 1223222222222222211 10 023455667888889999999999999998764 3445666777889
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 409 GNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 409 G~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
+.+...+|.+++|... ...+-+...-...-..-|+++...|+.++|+..|+.+....
T Consensus 133 Arvq~q~~k~D~AL~~-------L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKT-------LDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHH-------HhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 9999999887665544 44444444455556778899999999999999998887663
No 184
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.01 E-value=0.034 Score=44.40 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=52.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch
Q 008796 246 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK 314 (553)
Q Consensus 246 g~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~ 314 (553)
..+++..++|++|++.+++++.+. |+ ...++...|.++..+|++++|...|.++++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~---p~-----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD---PD-----DPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC---cc-----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 456699999999999999999994 44 24478889999999999999999999999876653
No 185
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.98 E-value=0.57 Score=51.83 Aligned_cols=148 Identities=13% Similarity=-0.006 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 240 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 240 ~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
......+......|.+++|++.+.. +....|+- +...-..|.++...++..+|.+.|.+|+.+.-+. ..
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~---L~~~~P~N-----~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~---~~ 375 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQP---LIAAQPDN-----PYYLELAGDILLEANKAKEAIERLKKALALDPNS---PL 375 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHH---HHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---cH
Confidence 3455777888899999999999988 77788882 4466778999999999999999999998776543 66
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChH
Q 008796 320 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 399 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~ 399 (553)
...|+|.+|+..|++.+..+ ++.+.-. ..-+-...|.-++.+|-.+|+-.+|...+.+.
T Consensus 376 l~~~~a~all~~g~~~eai~---~L~~~~~------~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------ 434 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIR---ILNRYLF------NDPEDPNGWDLLAQAYAELGNRAEALLARAEG------------ 434 (484)
T ss_pred HHHHHHHHHHhcCChHHHHH---HHHHHhh------cCCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------
Confidence 77899999999999885222 2222100 00113578899999888888877776554444
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 400 LVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 400 leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
+.-.|++++|...+..|...
T Consensus 435 ------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 ------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------------HHhCCCHHHHHHHHHHHHHh
Confidence 44456666666666665544
No 186
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.88 E-value=1.5 Score=48.75 Aligned_cols=287 Identities=15% Similarity=0.159 Sum_probs=158.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHH--hhcCCCCCChhhhhhhhhhHHHHHHHHHhcccCCCccc-----------
Q 008796 71 VDNLDAAMKADKQKMQEIQQLSSELDALN--QSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGK----------- 137 (553)
Q Consensus 71 ~~~ld~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 137 (553)
-++++.|++...+....-....+.-+... ...+..-.|+.-..+|-+-..++..-+-.+.+.|+.++
T Consensus 47 ~~~~~~A~~~l~~a~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~el~~AE~~L~~Ail~~~~es~~~~iKg~~~lRkay 126 (468)
T PF10300_consen 47 PEDIEEALEALKEAESLANKFRKKASKVSKKSNISNSIYPEELHAELCYAEALLLKAILTFLSESLVSFIKGGYKLRKAY 126 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 35677777777666655555555554444 22233445667778888888888888888888877661
Q ss_pred ---cccccccccc--cccccccccccCCCCCCcccc------chhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 008796 138 ---EFLEPSYFGN--ARQAWGDKLVLAPSPMDGEWL------PKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQ 206 (553)
Q Consensus 138 ---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~WL------p~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~ 206 (553)
+.+....... ....++ .+++..+..|= -++.+..-|++-.++|...-+.+.-.. +++
T Consensus 127 ~~y~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~~~sgv~~G~G~f~L~lSlLPp~~------~kl-- 194 (468)
T PF10300_consen 127 KIYKECMKIIEKLKKKAKSSS----PGEPDSHDSWDDDSTKPIDEFFESGVYFGFGLFNLVLSLLPPKV------LKL-- 194 (468)
T ss_pred HHHHHHHHHHHHHhhhhccCC----CCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhCCHHH------HHH--
Confidence 1111111100 000000 11222223442 245566666665555444332222211 111
Q ss_pred HHHHHcCCCCCcccccchhhHHHH-------HHHHHHHHHHHHHHHHHHH---H--hhCCHHHHHHHHHHHHHHHHHCCc
Q 008796 207 DALLKLGITDGVREVDLQHSAIWM-------AGVYLMLLMQFLENKVAVE---L--TRSGFVEAQEALVQMKNWFIRFPT 274 (553)
Q Consensus 207 ~~l~klG~~~~~~e~~l~~~~~~~-------a~vy~~L~a~lLenLg~~~---l--~~Gr~aeAl~~l~qAL~L~r~~~d 274 (553)
++=+|+..+ |+.+| .-+|. =+++.-| +++-.+++... . .-.....|.+.+..+. .++|+
T Consensus 195 --l~~vGF~gd-R~~GL--~~L~~~~~~~~i~~~la~L-~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~---~~yP~ 265 (468)
T PF10300_consen 195 --LSFVGFSGD-RELGL--RLLWEASKSENIRSPLAAL-VLLWYHLVVPSFLGIDGEDVPLEEAEELLEEML---KRYPN 265 (468)
T ss_pred --HhhcCcCCc-HHHHH--HHHHHHhccCCcchHHHHH-HHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHH---HhCCC
Confidence 223333321 22222 00111 0112111 12222222222 2 2334445555544433 33777
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHhCChHH-HHHHHHhhcccccccc
Q 008796 275 ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKD 352 (553)
Q Consensus 275 l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-~~g~A~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g 352 (553)
-+..+...|.+....|+.++|.+.|..|+....+ +.....|..-+|++|..++++++ ..-...+.+.
T Consensus 266 -----s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------ 334 (468)
T PF10300_consen 266 -----SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------ 334 (468)
T ss_pred -----cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------
Confidence 2557788999999999999999999998853333 55678999999999999999988 3333333332
Q ss_pred cccchhHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHH
Q 008796 353 TINGVREEASLHFAYGLLLMRQQDF-------QEARNRLAKGLQIAH 392 (553)
Q Consensus 353 ~~~~lr~eA~aL~~LG~~~~~qGr~-------~EA~~~L~eAL~Lar 392 (553)
+...+|...+..|.++...|+. ++|...+.++=.+..
T Consensus 335 ---s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 335 ---SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred ---cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 2234888889999999999999 555556665555543
No 187
>PRK11906 transcriptional regulator; Provisional
Probab=95.88 E-value=0.24 Score=54.55 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHh---C--ChHH-HHHHHHhhccccccccc
Q 008796 283 IEMLRGQYAHSVG---CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI---G--DAES-SSQAIDLIGPVYQMKDT 353 (553)
Q Consensus 283 ~~~lLG~~~~alG---~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~---G--d~e~-~~qAL~L~r~lgd~~g~ 353 (553)
-.++.|......+ ..+.|+.+|.+|+....-..+-|.++..+|++|... | +.+. ...|+++.+..-..
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--- 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--- 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc---
Confidence 5577787776655 456788888888844333445566777777777543 1 2122 55555554432110
Q ss_pred ccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 354 INGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 354 ~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
+ ..-+.+++.+|.+....|+++.|...|.+|+.+. .-.|.++...|.+..-.|+.++|.+++++|+.+
T Consensus 334 --d-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 334 --T-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred --C-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 0 1147899999999999999999999999999885 557889999999999999999999999999987
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.86 E-value=0.025 Score=45.18 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=50.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 008796 368 GLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 433 (553)
Q Consensus 368 G~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LAr 433 (553)
..+|+.++++++|..++++++.+.- .....+...|.++..+|++.+|...++++++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP-------DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc-------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5688999999999999999999952 2456778899999999999999999999996643
No 189
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.82 E-value=0.3 Score=44.52 Aligned_cols=110 Identities=24% Similarity=0.200 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh---------------HhHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 008796 364 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL---------------QLVSQYLTILGNLALALHDTVQAREILRSS 428 (553)
Q Consensus 364 L~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr---------------~leA~aL~~LG~i~lalGd~~eA~~~l~~A 428 (553)
+...|......|+..++...+++++.+++...... ..-..++..++..+...|++.+|...++.+
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34456666778899999999999999985322211 122357788999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH-HHhhHH
Q 008796 429 LTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD-ELQKRL 479 (553)
Q Consensus 429 L~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d-~L~~~~ 479 (553)
+.+ | +..-.+...|-++|...|++..|.+.|+...+... +++..-
T Consensus 89 l~~-----d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 89 LAL-----D-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHH-----S-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred Hhc-----C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 887 2 33344566777899999999999999999977766 455433
No 190
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.55 Score=48.36 Aligned_cols=166 Identities=19% Similarity=0.116 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
+|=++.+..+-.|..+.|.+++..-.+. + ++ | .-|++ |++++|+ ..|++.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~---------f-p~--------S-~RV~~----lkam~lE-------a~~~~~ 103 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR---------F-PG--------S-KRVGK----LKAMLLE-------ATGNYK 103 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh---------C-CC--------C-hhHHH----HHHHHHH-------Hhhchh
Confidence 3444445667789999999998765444 1 22 1 11122 2444444 567999
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 336 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~ 336 (553)
+|+++|..-+ .+.|.-+. ++-.-=-+..++|+--+|......=++.+ .+-.-+...++.+|...|++++
T Consensus 104 ~A~e~y~~lL---~ddpt~~v-----~~KRKlAilka~GK~l~aIk~ln~YL~~F---~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 104 EAIEYYESLL---EDDPTDTV-----IRKRKLAILKAQGKNLEAIKELNEYLDKF---MNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred hHHHHHHHHh---ccCcchhH-----HHHHHHHHHHHcCCcHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhHhHHHH
Confidence 9999999755 45566211 12122223467899999999888666654 2334567788999999999998
Q ss_pred ---HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 337 ---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 337 ---~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
|-+=+-++.|..-.. . ..-|.+++.+|. .-++.-|+.+|.+||++.-
T Consensus 173 A~fClEE~ll~~P~n~l~---f--~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLY---F--QRLAEVLYTQGG----AENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHcCCCcHHH---H--HHHHHHHHHHhh----HHHHHHHHHHHHHHHHhCh
Confidence 555566778762111 1 113556666664 3368899999999999974
No 191
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.73 E-value=0.74 Score=47.96 Aligned_cols=214 Identities=11% Similarity=0.063 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cch
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESK 314 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~---~d~ 314 (553)
-+-.|..++-++..+|+|.+-...|.+.+...+..-.. .+.+-.+...+. |-....+.+---+.|+.-|+.. ...
T Consensus 64 GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr-NySEKsIN~IlD-yiStS~~m~LLQ~FYeTTL~ALkdAKNe 141 (440)
T KOG1464|consen 64 GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR-NYSEKSINSILD-YISTSKNMDLLQEFYETTLDALKDAKNE 141 (440)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 34557778888899999999999999999988774331 122333333333 3333445555556666555444 445
Q ss_pred hhHHHHHHHHHHHHHHhCChHHHHHHHHhhc---ccccccccc--cchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 315 SMQAMCHAYAAVSYFCIGDAESSSQAIDLIG---PVYQMKDTI--NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 315 ~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r---~lgd~~g~~--~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
..+-..+.-||-+|...|++..+..-|.-+. ...+..++. |.-.-+.++ .-=..|..+.+...-+..|++||.
T Consensus 142 RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA--lEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 142 RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA--LEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh--hHhhhhhhhcccHHHHHHHHHHHH
Confidence 5677888899999999999887444333221 111111110 110001222 223567788888888999999999
Q ss_pred HHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHcC
Q 008796 390 IAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD-IPTQIWALSVLTALYQQLG 456 (553)
Q Consensus 390 Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD-~~~qa~aL~~Lg~ly~alG 456 (553)
+- ..+-++...+-..-.=|.+|++.|++..|..-+-+|+.-..+.|. +..++.-+..|+.....+|
T Consensus 220 iK-SAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 220 IK-SAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hh-ccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 96 478888888888888899999999999999999999999999998 6688888888988888777
No 192
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.73 E-value=0.5 Score=56.13 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=105.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHH---HhhcccccccccccchhHHHHH
Q 008796 287 RGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI---DLIGPVYQMKDTINGVREEASL 363 (553)
Q Consensus 287 LG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL---~L~r~lgd~~g~~~~lr~eA~a 363 (553)
+|.|+..-+++..|..+|+.|++.. ..-..+...+|.+|.+.|++...-.+. .+.+|. --++
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~d---PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------------s~y~ 632 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTD---PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------------SKYG 632 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCC---chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------------hHHH
Confidence 8999999999999999999998753 233567788999999999988622222 123443 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 008796 364 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 364 L~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArk 434 (553)
-|-.+......|+|.+|...+..-+.-...+.--.-+.|.++..++..++.+|=...|.+.++.++..+.-
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 56677788888999999999999888765555556888999999999999999999999999999887543
No 193
>PRK15331 chaperone protein SicA; Provisional
Probab=95.70 E-value=0.16 Score=49.02 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 430 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~ 430 (553)
.-+..||.++..+++|++|...|..|..+. ..|++- ....|..++.+|+...|+.++..+..
T Consensus 72 ~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---~~dp~p----~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 72 DYTMGLAAVCQLKKQFQKACDLYAVAFTLL---KNDYRP----VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cCCCCc----cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 467999999999999999999999999985 344333 66899999999999999999999987
No 194
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.54 E-value=0.56 Score=45.36 Aligned_cols=129 Identities=19% Similarity=0.029 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCC
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 333 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd 333 (553)
.-.+-++.++.-++-++...-. .-...++..+|.++...|++++|.+.|.++..-.....-...+..++-.+.+..|+
T Consensus 11 ~~~~~~~~Le~elk~~~~n~~k--esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 11 KNAEELEKLEAELKDAKSNLGK--ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 3445556666666666654321 33467889999999999999999999999888777777788888888888888899
Q ss_pred hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 334 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 334 ~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
+.. +.+|-.+....+| .--++.....-|+.++.+++|.+|-..|-+++.-.
T Consensus 89 ~~~v~~~i~ka~~~~~~~~d-------~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 89 WSHVEKYIEKAESLIEKGGD-------WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHhccch-------HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 887 5666666665432 21234445556888999999999999999987664
No 195
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.51 E-value=1.3 Score=54.50 Aligned_cols=114 Identities=14% Similarity=0.064 Sum_probs=75.6
Q ss_pred cccccccCCCCCCccccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--HHHHHcCCCCCcccccchhhHHH
Q 008796 152 WGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQ--DALLKLGITDGVREVDLQHSAIW 229 (553)
Q Consensus 152 ~~~~~~~~~~~~~~~WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~--~~l~klG~~~~~~e~~l~~~~~~ 229 (553)
+-++|+.+-|.-++-|+. -..|....+..++|++..++||..|+ ++-+|+ -+|
T Consensus 1446 DferlvrssPNSSi~WI~-----------YMaf~LelsEiekAR~iaerAL~tIN~REeeEKL--------------NiW 1500 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIR-----------YMAFHLELSEIEKARKIAERALKTINFREEEEKL--------------NIW 1500 (1710)
T ss_pred HHHHHHhcCCCcchHHHH-----------HHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHH--------------HHH
Confidence 445677777776666653 24577889999999999999999962 222432 266
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 230 MAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 309 (553)
Q Consensus 230 ~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~ 309 (553)
+| |+.|++ .-|.-+.-.+.|++|+..|.. -.+|.-|--.+...+.+++|.+.|+.=++
T Consensus 1501 iA--~lNlEn-----------~yG~eesl~kVFeRAcqycd~---------~~V~~~L~~iy~k~ek~~~A~ell~~m~K 1558 (1710)
T KOG1070|consen 1501 IA--YLNLEN-----------AYGTEESLKKVFERACQYCDA---------YTVHLKLLGIYEKSEKNDEADELLRLMLK 1558 (1710)
T ss_pred HH--HHhHHH-----------hhCcHHHHHHHHHHHHHhcch---------HHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 43 322222 224556677888888888753 12444444455668899999999996666
Q ss_pred Hcc
Q 008796 310 ITE 312 (553)
Q Consensus 310 l~~ 312 (553)
-++
T Consensus 1559 KF~ 1561 (1710)
T KOG1070|consen 1559 KFG 1561 (1710)
T ss_pred Hhc
Confidence 555
No 196
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.50 E-value=6.5 Score=45.37 Aligned_cols=284 Identities=14% Similarity=0.146 Sum_probs=173.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC----cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 178 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDG----VREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 178 ~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~----~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
|+.-.-+.+-+|...+-+.++.+||...-- ..+-.+.+- +++-+|+-..+-+=+-|+++.=.--+.-+......+
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 444456677899999999999999988221 111112111 244444322222223354444444566666677788
Q ss_pred CHHHHHHHHHHHH---------------------HHHHHCCc----------------hhhhhHHHHHHHHHHHHHHcCC
Q 008796 254 GFVEAQEALVQMK---------------------NWFIRFPT----------------ILQACESMIEMLRGQYAHSVGC 296 (553)
Q Consensus 254 r~aeAl~~l~qAL---------------------~L~r~~~d----------------l~~~~~A~~~~lLG~~~~alG~ 296 (553)
+.++|.+.+...+ ++.-++|+ .+....+.+.+.|..|+.+.|+
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 9999988876554 23333454 2223356788999999999999
Q ss_pred HHHHHHHHHHHHHHc---cchhh---------HHHHHHHHH---------------------------------------
Q 008796 297 YSEAAFHYVEAAKIT---ESKSM---------QAMCHAYAA--------------------------------------- 325 (553)
Q Consensus 297 yeeAl~~f~~AL~l~---~d~~g---------~A~aL~NLA--------------------------------------- 325 (553)
|+.|-..|.+|+... +|-.- +-....-++
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 999999999999843 22110 000000000
Q ss_pred -----------HHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 326 -----------VSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 326 -----------~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
.|-+..|++.+ +.+|..-+.|-. .+| . -...+..+|..|-..|+.+.|+..+++|++.
T Consensus 344 Qn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~k-a~G---s---~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKK-AVG---S---PGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred cCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCccc-CCC---C---hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 01122223322 444444444431 121 1 2356788899999999999999999999887
Q ss_pred HHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH------hCChHHHHHHHHHHHHHHHHcCCchHHHHH
Q 008796 391 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK------LYDIPTQIWALSVLTALYQQLGDRGNEMEN 464 (553)
Q Consensus 391 ar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArk------lgD~~~qa~aL~~Lg~ly~alGd~~~A~e~ 464 (553)
- -+-....|.+...-|+.-+...+.+.|+...+.|+.+=+. -+..+.|...++.| ++....-|++++..-
T Consensus 417 ~---y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl-kiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 417 P---YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL-KIWSMYADLEESLGT 492 (835)
T ss_pred C---ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH-HHHHHHHHHHHHhcc
Confidence 4 3444556888888999999999999999999998876333 24467787777665 344444444555444
Q ss_pred HHHHHHHHH
Q 008796 465 DEYRRKKLD 473 (553)
Q Consensus 465 ~e~a~~~~d 473 (553)
++--++.-+
T Consensus 493 festk~vYd 501 (835)
T KOG2047|consen 493 FESTKAVYD 501 (835)
T ss_pred HHHHHHHHH
Confidence 444443333
No 197
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.44 E-value=2.2 Score=49.59 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHH------HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHH--------------
Q 008796 365 FAYGLLLMRQQDFQEARNRLA------KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI-------------- 424 (553)
Q Consensus 365 ~~LG~~~~~qGr~~EA~~~L~------eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~-------------- 424 (553)
..-|-++-...++++|.++|+ +|++++| ...+..+...--.-|.-.-..|+++.|.++
T Consensus 665 dkagdlfeki~d~dkale~fkkgdaf~kaielar--fafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 665 DKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR--FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred HhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH--hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 344555566666677776654 3455542 333232222222334444455666666655
Q ss_pred -----HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Q 008796 425 -----LRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 476 (553)
Q Consensus 425 -----l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~ 476 (553)
|..|+.+...+.|+.....-+-.+++-|...|+++.|.+.|..+..+.|.+.
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~ 799 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAID 799 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHH
Confidence 4445555555666665555566778889999999999999988877776654
No 198
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.42 E-value=0.36 Score=48.87 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
++.+|..-|..+=..|=.+-|.-.+.|++.|. |+ .+.+.|.+|.|..-.|+|+.|.+.|..-+++- .+-
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~---P~-----m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~y 132 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIR---PD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTY 132 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC---CC-----cHHHHHHHHHHHHhcccchHHHHHhhhHhccC---Ccc
Confidence 78888888888888999999999999999984 55 35689999999999999999999999766542 223
Q ss_pred HHHHHHHHHHHHHhCChHH-HH--------------HHHHh--hcccccccccccchhHHHHHHH----HHHHHHHHcCC
Q 008796 318 AMCHAYAAVSYFCIGDAES-SS--------------QAIDL--IGPVYQMKDTINGVREEASLHF----AYGLLLMRQQD 376 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~-~~--------------qAL~L--~r~lgd~~g~~~~lr~eA~aL~----~LG~~~~~qGr 376 (553)
-++..|-|+...--|++.- .+ ++|=+ .....|+..-...+.+++.-+. .--.|-+..|.
T Consensus 133 ~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgk 212 (297)
T COG4785 133 NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGK 212 (297)
T ss_pred hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhh
Confidence 3444455554444455442 11 11111 0111111100000000110000 00112223333
Q ss_pred HHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q 008796 377 FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 456 (553)
Q Consensus 377 ~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alG 456 (553)
..+ +..+.++-.-+++...-......+..-||.-++..|+..+|...++- +++.....-..--.++..|+.++....
T Consensus 213 iS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKL--aiannVynfVE~RyA~~EL~~l~q~~~ 289 (297)
T COG4785 213 ISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKL--AVANNVYNFVEHRYALLELSLLGQDQD 289 (297)
T ss_pred ccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHhccccc
Confidence 222 12222222222100000122345667788888888888888888874 455565555555566777777666553
Q ss_pred C
Q 008796 457 D 457 (553)
Q Consensus 457 d 457 (553)
+
T Consensus 290 ~ 290 (297)
T COG4785 290 D 290 (297)
T ss_pred h
Confidence 3
No 199
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.36 E-value=0.12 Score=57.24 Aligned_cols=239 Identities=15% Similarity=0.103 Sum_probs=132.9
Q ss_pred ccccccccccccccccCCCCCCccccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HcCCCCCcccc
Q 008796 143 SYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALL-KLGITDGVREV 221 (553)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~-klG~~~~~~e~ 221 (553)
|.|+--.. +|+-+.++.+...+-===.+.+.+.|++..+-.+.....-+++..|..---.++.+-.. +-|. ...+.
T Consensus 108 Vi~yh~~~-~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn--~~~~n 184 (696)
T KOG2471|consen 108 VIFYHHEE-NGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN--HIPAN 184 (696)
T ss_pred eeeeeHhh-cchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--ccchh
Confidence 56666665 88888888887777322356778889999988888888888888776543333211111 1110 11111
Q ss_pred cc----hhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCH
Q 008796 222 DL----QHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCY 297 (553)
Q Consensus 222 ~l----~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~y 297 (553)
++ .+++---+.+-.-++..+.+..+..++-+-+.--+-+....++.+... -+..+.+=.......|+|
T Consensus 185 n~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~--------s~~~l~LKsq~eY~~gn~ 256 (696)
T KOG2471|consen 185 NLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQD--------SSMALLLKSQLEYAHGNH 256 (696)
T ss_pred hhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCC--------CcHHHHHHHHHHHHhcch
Confidence 11 100000011111123333344444444444455555555555554432 123344445555667777
Q ss_pred HHHHHHHHHHHHHccchhh-------HHHHHHHHHHHHHHhCChHH----HHHHHH-hhccccc---c-cccccchhHHH
Q 008796 298 SEAAFHYVEAAKITESKSM-------QAMCHAYAAVSYFCIGDAES----SSQAID-LIGPVYQ---M-KDTINGVREEA 361 (553)
Q Consensus 298 eeAl~~f~~AL~l~~d~~g-------~A~aL~NLA~vyl~~Gd~e~----~~qAL~-L~r~lgd---~-~g~~~~lr~eA 361 (553)
..|......+ .+....++ ..+.++|+|-|+++.|.|.. +..||. -...+.. + +--...-....
T Consensus 257 ~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~ 335 (696)
T KOG2471|consen 257 PKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSM 335 (696)
T ss_pred HHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccch
Confidence 7777776522 12222221 33456888888888888775 666663 2111100 0 00001111246
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
..++|.|..+++.||+-+|.++|.+|...+++
T Consensus 336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999863
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.33 E-value=0.026 Score=44.50 Aligned_cols=53 Identities=26% Similarity=0.263 Sum_probs=43.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 372 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 372 ~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
+..|+|++|...|++++...- + -..+...||.++...|++++|..++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p---~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP---D----NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT---T----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCC---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 578999999999999998852 2 2456778999999999999999999988755
No 201
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.30 E-value=0.039 Score=37.84 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
|.+++.+|.++..+|++++|..+|++|+++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5689999999999999999999999999985
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.26 E-value=0.083 Score=52.22 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHH
Q 008796 364 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIW 443 (553)
Q Consensus 364 L~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~ 443 (553)
.+.+|......||+.||..+|+++|.--. -+ .+..|..|+....+.+++..|...++.-.+.- --..+-.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~f--A~----d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~----pa~r~pd 161 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIF--AH----DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN----PAFRSPD 161 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhcccc--CC----CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC----CccCCCC
Confidence 47789999999999999999999987553 23 35677888888888888888777766544431 1122233
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 444 ALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 444 aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
....+++++...|.++.|...++.+.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHH
Confidence 45678888899999888877666544
No 203
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.10 E-value=0.045 Score=43.09 Aligned_cols=56 Identities=23% Similarity=0.181 Sum_probs=44.6
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d 313 (553)
+..|+|++|++.+++++.. .|+ -..+...+|.++...|++++|...+.+.+....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPD-----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTT-----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHH---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5679999999999999866 454 1336678999999999999999999987766555
No 204
>PRK11906 transcriptional regulator; Provisional
Probab=95.09 E-value=0.25 Score=54.43 Aligned_cols=136 Identities=10% Similarity=-0.078 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Q 008796 320 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ---------QDFQEARNRLAKGLQI 390 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~q---------Gr~~EA~~~L~eAL~L 390 (553)
-+.-.|.-++..+.++...+|+.++.+.-.+.. .+ .+-|.++..++.+|+.. .+-.+|+++.++|+++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~--ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSD--IQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhccc--CC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 445556667777788888888888876531110 01 12466666666666654 2345666677777666
Q ss_pred HHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 391 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 391 ar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
- ..-+.++..+|.+....|+++.|...+++|+.+. +.-+.+....|.+....|+.++|.++.+.+.+
T Consensus 334 d-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 334 T-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS------TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred C-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3 3447899999999999999999999999998874 33345566777788889999999999988665
Q ss_pred H
Q 008796 471 K 471 (553)
Q Consensus 471 ~ 471 (553)
.
T Consensus 401 L 401 (458)
T PRK11906 401 L 401 (458)
T ss_pred c
Confidence 4
No 205
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.02 E-value=4.2 Score=41.82 Aligned_cols=130 Identities=15% Similarity=0.010 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008796 172 AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 251 (553)
Q Consensus 172 ~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~ 251 (553)
.-.+-.++-.+-..+-.|+++-|..++.++... ......... . + ...-+-..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~----~~~~~~~~~--------~------v--------~~e~akllw~ 196 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQL----NPSSESLLP--------R------V--------FLEYAKLLWA 196 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhcc----CCcccCCCc--------c------h--------HHHHHHHHHH
Confidence 344466788888999999999888887776665 212111111 0 0 1112334488
Q ss_pred hCCHHHHHHHHHHHHH-HHHHC-------------------------CchhhhhHHHHHHHHHHHHHHc------CCHHH
Q 008796 252 RSGFVEAQEALVQMKN-WFIRF-------------------------PTILQACESMIEMLRGQYAHSV------GCYSE 299 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~-L~r~~-------------------------~dl~~~~~A~~~~lLG~~~~al------G~yee 299 (553)
+|+..+|+..+...++ .+... ........+.++..+|.+.... +.+++
T Consensus 197 ~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~ 276 (352)
T PF02259_consen 197 QGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDE 276 (352)
T ss_pred cCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 9999999999998888 33322 1111245678999999999999 99999
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHH
Q 008796 300 AAFHYVEAAKITESKSMQAMCHAYAAVSYFC 330 (553)
Q Consensus 300 Al~~f~~AL~l~~d~~g~A~aL~NLA~vyl~ 330 (553)
+...|.+|+..... ...++.+.|..+..
T Consensus 277 ~~~~~~~a~~~~~~---~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 277 ILKYYKEATKLDPS---WEKAWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHhChh---HHHHHHHHHHHHHH
Confidence 99999999876443 22355555655544
No 206
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.87 E-value=0.28 Score=59.49 Aligned_cols=202 Identities=17% Similarity=0.097 Sum_probs=152.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhh-----HHHHHHHHHHHHHHhCChHH----HHHHHHhhccccc
Q 008796 279 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM-----QAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQ 349 (553)
Q Consensus 279 ~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g-----~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd 349 (553)
..+.--.-.|......|.+.+|.+ ..+++...++..+ .+.|+..|+.+|...|++++ ...|.-+..+..
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~- 1007 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL- 1007 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc-
Confidence 345556667888889999999999 8888888887554 57899999999999999876 222222222221
Q ss_pred ccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-hHhHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 008796 350 MKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSS 428 (553)
Q Consensus 350 ~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd-r~leA~aL~~LG~i~lalGd~~eA~~~l~~A 428 (553)
| .+-.+.+..+-+++...+.......|...+.+|+.+..=-.|. ..-.+.+-++++.+.+..++++.|.++++.|
T Consensus 1008 --g--~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1008 --G--KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred --c--CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 1222367888899999999999999999999999986433444 6677888899999999999999999999999
Q ss_pred HHHHHHhCC--hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH-HHHHhhHHHHhhcch
Q 008796 429 LTLAKKLYD--IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK-LDELQKRLADAYSSI 486 (553)
Q Consensus 429 L~LArklgD--~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~-~d~L~~~~~~A~~~~ 486 (553)
+.+.+++.- ...-+.+...+++++...|+...|..+......+ ...++.++.+-..|-
T Consensus 1084 ~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~ 1144 (1236)
T KOG1839|consen 1084 LAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESS 1144 (1236)
T ss_pred HHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhH
Confidence 999988854 3344556688999999999999998887655444 445566665555443
No 207
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.77 E-value=3.7 Score=42.28 Aligned_cols=177 Identities=17% Similarity=0.114 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
+..|.+-|...+..|++.+|.+.|+... .++|- ....-++.-.++-.+..-++|++|.....+=+++.......+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~---~~~p~--s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALD---SRHPF--SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCC--CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 4457899999999999999999999765 66666 233467888899999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHhCC---hHH--HHHHHHhhcccccccccc---cch--------hHHHHHHHHHHHHHHHcCCHHHHHH
Q 008796 319 MCHAYAAVSYFCIGD---AES--SSQAIDLIGPVYQMKDTI---NGV--------REEASLHFAYGLLLMRQQDFQEARN 382 (553)
Q Consensus 319 ~aL~NLA~vyl~~Gd---~e~--~~qAL~L~r~lgd~~g~~---~~l--------r~eA~aL~~LG~~~~~qGr~~EA~~ 382 (553)
.+..-.|.++...=+ .|+ ..+|..-++.+-.+--++ .+. ...|.==..+|..|.+.|.+-.|..
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 888888888755333 222 666666666544332221 000 0013333457899999999999999
Q ss_pred HHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHH
Q 008796 383 RLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREI 424 (553)
Q Consensus 383 ~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~ 424 (553)
.+++.++-. -+..-+-.+|-.|.++|..+|-.++|...
T Consensus 189 R~~~v~e~y----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 189 RFEEVLENY----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHhcc----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 999998875 23344556789999999999998887654
No 208
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.72 E-value=1.1 Score=49.91 Aligned_cols=144 Identities=20% Similarity=0.126 Sum_probs=100.5
Q ss_pred cchhhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHH
Q 008796 168 LPKSAVYALVDLMVVILGRPK----GLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLE 243 (553)
Q Consensus 168 Lp~~~~~~Lv~l~tv~~~~~~----G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLe 243 (553)
=|-..++.|+|...+..+..- .+.+.|.+..+..++. -|. +.+ ++.
T Consensus 222 ~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~----------yP~--------s~l------------fl~ 271 (468)
T PF10300_consen 222 SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR----------YPN--------SAL------------FLF 271 (468)
T ss_pred hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh----------CCC--------cHH------------HHH
Confidence 356677778888877766653 3444444444333333 112 222 377
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHH
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 323 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~N 323 (553)
.-|.++...|+.++|++.+.+|++.-...+.+ ...+...+|..+..+++|++|..+|..-.+ .+.-..|.-..-
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql----~~l~~~El~w~~~~~~~w~~A~~~f~~L~~--~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQL----HHLCYFELAWCHMFQHDWEEAAEYFLRLLK--ESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhH----HHHHHHHHHHHHHHHchHHHHHHHHHHHHh--ccccHHHHHHHH
Confidence 78888899999999999999999654444442 356889999999999999999999985444 223457777788
Q ss_pred HHHHHHHhCChHH----HHHHHHhhccc
Q 008796 324 AAVSYFCIGDAES----SSQAIDLIGPV 347 (553)
Q Consensus 324 LA~vyl~~Gd~e~----~~qAL~L~r~l 347 (553)
.|.++...|+.+. -.+|.++++++
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 8889999998732 46677776665
No 209
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.66 E-value=0.078 Score=36.46 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 402 SQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 402 A~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
|.++.++|.++..+|++++|...+++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 567889999999999999999999999986
No 210
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.64 E-value=1 Score=44.73 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
......+.....--+++++|+.+...++....|....+.+..+||.|-...|.+|. ||.++..+ .+....
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~---AL~~L~t~-------~~~~w~ 158 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADA---ALKTLDTI-------KEESWA 158 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHH---HHHHHhcc-------ccccHH
Confidence 34444556666778999999999999999999999999999999999999999775 44444443 111124
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
+..-..-|-++..+|+-++|+..|.+|+...
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5556677999999999999999999999884
No 211
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.51 E-value=0.56 Score=46.85 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh-------CChHHHHHHHHH
Q 008796 375 QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL-------YDIPTQIWALSV 447 (553)
Q Consensus 375 Gr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl-------gD~~~qa~aL~~ 447 (553)
-.+++|.+.|.-||--+.-...+....|.....|+-+|...|+..+...+++.|+....+. .....+...+..
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3578899999999888753344567889999999999999999888888888888887765 224466788999
Q ss_pred HHHHHHHcCCchHHHHHHHHH
Q 008796 448 LTALYQQLGDRGNEMENDEYR 468 (553)
Q Consensus 448 Lg~ly~alGd~~~A~e~~e~a 468 (553)
+|++++..|++++|...+...
T Consensus 171 igeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999998876544
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=5.7 Score=41.49 Aligned_cols=198 Identities=15% Similarity=0.123 Sum_probs=131.5
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 008796 186 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 265 (553)
Q Consensus 186 ~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qA 265 (553)
+.-|+--+.....++-+.++.++++.+-.... .|..+ ..|--+ .-.+-+.++.|++-.++|.-....+...
T Consensus 133 ~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~-~ESsv---~lW~KR-----l~~Vmy~~~~~llG~kEy~iS~d~~~~v 203 (366)
T KOG2796|consen 133 QYLGNPQESLDRLHKLKTVVSKILANLEQGLA-EESSI---RLWRKR-----LGRVMYSMANCLLGMKEYVLSVDAYHSV 203 (366)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHH---HHHHHH-----HHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 34566667777777888888777765433222 12222 233211 2223467788889999999999998888
Q ss_pred HHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHhCChHHHHHHHH
Q 008796 266 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAESSSQAID 342 (553)
Q Consensus 266 L~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~ 342 (553)
++ .+|.. .+.+...||.+.+..|+...|..+|+..=+..+. ..+.-.++.|.+.+|+-..++.+.-++-+
T Consensus 204 i~---~~~e~----~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 204 IK---YYPEQ----EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HH---hCCcc----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHh
Confidence 77 34331 4567788999999999999999999954443333 33566788999999998888776444432
Q ss_pred hhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHH
Q 008796 343 LIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 412 (553)
Q Consensus 343 L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~ 412 (553)
-+=...++ -+.+-++.+++.+..|+...|....+.++.+. -|. ...-..+.+|-.+|
T Consensus 277 ~i~~~D~~---------~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~---P~~-~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 277 EILRMDPR---------NAVANNNKALCLLYLGKLKDALKQLEAMVQQD---PRH-YLHESVLFNLTTMY 333 (366)
T ss_pred hccccCCC---------chhhhchHHHHHHHHHHHHHHHHHHHHHhccC---Ccc-chhhhHHHHHHHHH
Confidence 22222111 34567889999999999999999999988764 222 33334455555544
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.62 Score=48.66 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=75.5
Q ss_pred HHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChH--H-----HHH
Q 008796 267 NWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE--S-----SSQ 339 (553)
Q Consensus 267 ~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e--~-----~~q 339 (553)
.-.+++|+- +.-...||.+++.+|+++.|..-|..|.++.++....- ..+|.++....+.. . +.+
T Consensus 147 ~~L~~nP~d-----~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~---~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 147 THLQQNPGD-----AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEIL---LGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHhCCCC-----chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhcCCcccHHHHHHHHH
Confidence 445667773 34578999999999999999999999999998855322 22233333322211 1 444
Q ss_pred HHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 340 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 340 AL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
||.+ |+ ....+++-+|..++.+|+|.+|....+.-|+...
T Consensus 219 al~~-----D~--------~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 219 ALAL-----DP--------ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHhc-----CC--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 4442 11 1557889999999999999999999999999873
No 214
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.29 E-value=1.6 Score=47.69 Aligned_cols=120 Identities=17% Similarity=0.094 Sum_probs=84.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHH
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 323 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~N 323 (553)
.|..+...++++++|+..+++.. .+.|+ +...+..++...++-.+|.....++++..... +..|.-
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~---~~~pe--------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---~~LL~~ 239 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLR---ERDPE--------VAVLLARVYLLMNEEVEAIRLLNEALKENPQD---SELLNL 239 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHH---hcCCc--------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---HHHHHH
Confidence 33344455688998888887733 44566 23346666677889999999999999654332 777888
Q ss_pred HHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 324 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK 386 (553)
Q Consensus 324 LA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~e 386 (553)
.|..++..|+++. |+.+.+..-.. ....-.+|+.|+.+|...|++++|+..+.-
T Consensus 240 Qa~fLl~k~~~~l---AL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 240 QAEFLLSKKKYEL---ALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHhcCCHHH---HHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8888999898864 44443332111 011668999999999999999999988773
No 215
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.23 E-value=2 Score=47.94 Aligned_cols=143 Identities=9% Similarity=-0.080 Sum_probs=92.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q 008796 246 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 325 (553)
Q Consensus 246 g~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA 325 (553)
..-.|+..++..-++...+||++.....| ++.+|+. ..-....+|+.+|++|++..+..-+......+-|
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAd--------AYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g 244 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCAD--------AYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHG 244 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhH--------HHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence 34458899999999999999999865544 3333332 2234578999999999987665444333322222
Q ss_pred HHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHH
Q 008796 326 VSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 405 (553)
Q Consensus 326 ~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL 405 (553)
..+-. ... .+.+-...+-..+|.+..++|+..||.+.+++-++... ..|.. .+.
T Consensus 245 ~~~e~-------------~~~--------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p--~~~~l---~Ir 298 (539)
T PF04184_consen 245 HFWEA-------------WHR--------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP--NLDNL---NIR 298 (539)
T ss_pred chhhh-------------hhc--------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC--ccchh---hHH
Confidence 11111 000 01112456778899999999999999999999888752 22222 255
Q ss_pred HHHHHHHHHCCChHHHHHH
Q 008796 406 TILGNLALALHDTVQAREI 424 (553)
Q Consensus 406 ~~LG~i~lalGd~~eA~~~ 424 (553)
.+|-+.++..+.+.++...
T Consensus 299 enLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 299 ENLIEALLELQAYADVQAL 317 (539)
T ss_pred HHHHHHHHhcCCHHHHHHH
Confidence 6777778888777665544
No 216
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.21 E-value=0.34 Score=52.81 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=81.5
Q ss_pred HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC
Q 008796 337 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 416 (553)
Q Consensus 337 ~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG 416 (553)
++.|++++.++.... . .+...++.++...++..+|.+.+.++|+... +. +..|..-+..++..|
T Consensus 185 ~~~ai~lle~L~~~~----p-----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d------~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 185 YDEAIELLEKLRERD----P-----EVAVLLARVYLLMNEEVEAIRLLNEALKENP-QD------SELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHHHhcC----C-----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CC------HHHHHHHHHHHHhcC
Confidence 455666666553221 1 2445688899999999999999999996542 12 778999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHH
Q 008796 417 DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 463 (553)
Q Consensus 417 d~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e 463 (553)
+++.|..++++|..++ +....+...|+.+|...|++++|+-
T Consensus 249 ~~~lAL~iAk~av~ls------P~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 249 KYELALEIAKKAVELS------PSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred CHHHHHHHHHHHHHhC------chhHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999998774 4445566779999999999999985
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.19 E-value=0.43 Score=49.20 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=68.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH-HHHHHHhhcccccccccccchhHHH-HHHHH
Q 008796 289 QYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEA-SLHFA 366 (553)
Q Consensus 289 ~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~lr~eA-~aL~~ 366 (553)
.-+...|+|.+|..-|..=++..-...-.+.+...||.++..+|+++. ...=+..++...+.+ +| .+++-
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~--------KApdallK 220 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP--------KAPDALLK 220 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC--------CChHHHHH
Confidence 333446778888888887777666666677888888888888888776 222222334433222 43 89999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 367 YGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 367 LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
+|.+...+|+.++|...|++..+-+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987654
No 218
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.07 E-value=0.13 Score=35.00 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 402 SQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 402 A~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
|.++..+|.++..+|++++|++++++|+.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4678899999999999999999999998763
No 219
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.05 E-value=0.97 Score=43.71 Aligned_cols=105 Identities=10% Similarity=-0.091 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.-.++..+|..|...|++++|.+.|.++.+-+- ..| -......++=.+....||+.....++.+|-.+..+.||..
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~---~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~ 110 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCT-SPG---HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE 110 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence 468899999999999999999999999877652 333 3444556666778889999999999999999999988855
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYR 468 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a 468 (553)
........-|-.+...|++..|...|-..
T Consensus 111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 111 RRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 54443444444556678888887766443
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.85 E-value=0.5 Score=48.74 Aligned_cols=97 Identities=19% Similarity=0.139 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHH
Q 008796 364 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIW 443 (553)
Q Consensus 364 L~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~ 443 (553)
+|+.++-++..|+|.+|...|..-++-+ -+. ...+.+.+-||+++..+|++..|...+..+. +..++.+---.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y---P~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~---k~~P~s~KApd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY---PNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVV---KDYPKSPKAPD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC-cccchhHHHHHHHHHhcccchHHHHHHHHHH---HhCCCCCCChH
Confidence 8999999999999999999999988875 222 5678899999999999999999999987665 57777777777
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHH
Q 008796 444 ALSVLTALYQQLGDRGNEMENDEY 467 (553)
Q Consensus 444 aL~~Lg~ly~alGd~~~A~e~~e~ 467 (553)
++.-||.+..++|+.+.|...++.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999888765443
No 221
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=1.8 Score=44.92 Aligned_cols=152 Identities=19% Similarity=0.154 Sum_probs=100.4
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q 008796 246 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 325 (553)
Q Consensus 246 g~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA 325 (553)
+.+++.-|+|++|.+....-..+ ++.+++. .+..++.+++-|.....+...+..| ..++.||
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~l-----------E~~Al~V--qI~lk~~r~d~A~~~lk~mq~ided-----~tLtQLA 176 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENL-----------EAAALNV--QILLKMHRFDLAEKELKKMQQIDED-----ATLTQLA 176 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchH-----------HHHHHHH--HHHHHHHHHHHHHHHHHHHHccchH-----HHHHHHH
Confidence 45568889999999887652222 3334443 3445667777777777655554433 3344444
Q ss_pred HHH--HHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHH
Q 008796 326 VSY--FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 403 (553)
Q Consensus 326 ~vy--l~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~ 403 (553)
..| +..|- +++..|.=++.+.-+.+ .. -...++..+.+++.+|||+||...+++||.-- -++ ..
T Consensus 177 ~awv~la~gg-ek~qdAfyifeE~s~k~---~~---T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd---~~d----pe 242 (299)
T KOG3081|consen 177 QAWVKLATGG-EKIQDAFYIFEELSEKT---PP---TPLLLNGQAVCHLQLGRYEEAESLLEEALDKD---AKD----PE 242 (299)
T ss_pred HHHHHHhccc-hhhhhHHHHHHHHhccc---CC---ChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc---CCC----HH
Confidence 444 33333 22777777777764322 11 35678899999999999999999999999764 233 56
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHH
Q 008796 404 YLTILGNLALALHDTVQAREILRSSL 429 (553)
Q Consensus 404 aL~~LG~i~lalGd~~eA~~~l~~AL 429 (553)
+|.++=...+..|...++.+-+-.-|
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 78888888889998877765554444
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.59 E-value=2.8 Score=38.14 Aligned_cols=122 Identities=14% Similarity=0.029 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
+..-+......|+..+++..+.+|+.+++. +.+..... ..=.......+. .....++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G--~~l~~~~~------------~~W~~~~r~~l~---------~~~~~~~ 65 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRG--DFLPDLDD------------EEWVEPERERLR---------ELYLDAL 65 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--S--STTGGGTT------------STTHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCC--CCCCCCCc------------cHHHHHHHHHHH---------HHHHHHH
Confidence 334455567789999999999999999984 32121000 000111111111 1223456
Q ss_pred HHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 322 AYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
..++..+...|+++. +.+++. ..|. --.++..+-.++..+|++.+|++.|++.-+..++++|-
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~-~dP~------------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA-LDPY------------DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH-HSTT-------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh-cCCC------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 667778888888876 223222 2222 12455667788999999999999999999998877787
Q ss_pred hH
Q 008796 398 LQ 399 (553)
Q Consensus 398 r~ 399 (553)
..
T Consensus 133 ~P 134 (146)
T PF03704_consen 133 EP 134 (146)
T ss_dssp --
T ss_pred Cc
Confidence 33
No 223
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.55 E-value=3.7 Score=48.41 Aligned_cols=235 Identities=15% Similarity=0.098 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 237 LLMQFLENKVAVELTRSGFV------EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 310 (553)
Q Consensus 237 L~a~lLenLg~~~l~~Gr~a------eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l 310 (553)
++.-+||.--.++..--||+ +++-....|+++.+.... .+.-..+++-..+..+.++.+.|+++|+++=..
T Consensus 811 ieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DR---iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDR---IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccc---eehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 45555555555554444444 444455566666655443 334456666666667788888888888853211
Q ss_pred ccchhhHHHHHHHHHHH--HHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008796 311 TESKSMQAMCHAYAAVS--YFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRL 384 (553)
Q Consensus 311 ~~d~~g~A~aL~NLA~v--yl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L 384 (553)
+-+ ---+..-+.+.+ |.+.-+.+. ..+=|+-.++. . -.......|.-+|.+--++..+|+.++|
T Consensus 888 afe--v~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem---d-aAl~~Y~~A~D~fs~VrI~C~qGk~~kA---- 957 (1416)
T KOG3617|consen 888 AFE--VFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM---D-AALSFYSSAKDYFSMVRIKCIQGKTDKA---- 957 (1416)
T ss_pred HHH--HHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccch---H-HHHHHHHHhhhhhhheeeEeeccCchHH----
Confidence 100 000111111111 111111111 11111111111 0 0011111233334444444455555554
Q ss_pred HHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHH---------HH
Q 008796 385 AKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL-----YDIPTQIWALSVL---------TA 450 (553)
Q Consensus 385 ~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl-----gD~~~qa~aL~~L---------g~ 450 (553)
-.|++ +.||+- +-+.||..|-..|+..+|...+.+|-+....| .|...+.|.+..+ ++
T Consensus 958 ---a~iA~-esgd~A----AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aAr 1029 (1416)
T KOG3617|consen 958 ---ARIAE-ESGDKA----ACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAAR 1029 (1416)
T ss_pred ---HHHHH-hcccHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHH
Confidence 35664 677732 34578999999999999998887776665554 5666666666544 33
Q ss_pred HHHHcC-CchHHHHHHHHHHHHHHHHhhHHHHhhcchhhHHHHhh
Q 008796 451 LYQQLG-DRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISK 494 (553)
Q Consensus 451 ly~alG-d~~~A~e~~e~a~~~~d~L~~~~~~A~~~~~h~~l~~~ 494 (553)
-|...| ...+|...|..+.-+...|. .+=+++.|+--.||.+
T Consensus 1030 YyEe~g~~~~~AVmLYHkAGm~~kALe--lAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1030 YYEELGGYAHKAVMLYHKAGMIGKALE--LAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHcchhhhHHHHHHHhhcchHHHHH--HHHhhcccHHHHHHHH
Confidence 455666 66677766666555444432 2223344555555543
No 224
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.39 E-value=0.18 Score=34.52 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 008796 402 SQYLTILGNLALALHDTVQAREILRSSLTLAK 433 (553)
Q Consensus 402 A~aL~~LG~i~lalGd~~eA~~~l~~AL~LAr 433 (553)
|.++..+|.++...|++++|..++++|+++..
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 46788899999999999999999999988754
No 225
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.96 E-value=3.4 Score=43.01 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
...+-.-+..++--|+|++|+.+.. . -...++.++++ .|.++..+.+-+++.+.-...+.+- ..+...
T Consensus 108 ~i~~l~aa~i~~~~~~~deAl~~~~----~--~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~ided----~tLtQL 175 (299)
T KOG3081|consen 108 LIDLLLAAIIYMHDGDFDEALKALH----L--GENLEAAALNV--QILLKMHRFDLAEKELKKMQQIDED----ATLTQL 175 (299)
T ss_pred HHHHHHhhHHhhcCCChHHHHHHHh----c--cchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccchH----HHHHHH
Confidence 3566677888888999999998876 2 23456777765 3455555555566666666655211 122223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd-r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
|.+|..++ .| ...++.|.=++. +..+ -..+...++.++.+++.+|++++|...++.||. +..+|
T Consensus 176 A~awv~la-----~g-----gek~qdAfyife-E~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~d-- 240 (299)
T KOG3081|consen 176 AQAWVKLA-----TG-----GEKIQDAFYIFE-ELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKD-- 240 (299)
T ss_pred HHHHHHHh-----cc-----chhhhhHHHHHH-HHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCC--
Confidence 44444433 22 233556666663 5555 566788999999999999999999999999985 34444
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMEN 464 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~ 464 (553)
-.+|.++--+-...|.+.++.+-
T Consensus 241 --petL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 241 --PETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred --HHHHHHHHHHHHHhCCChHHHHH
Confidence 33566666677788888766553
No 226
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.54 E-value=2.2 Score=42.91 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD 437 (553)
..++..+-.-|.-.+..|+|.+|...|.+||.++- .. ..-..+..+.+-|-+...++....|++-+..|+.|.
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp-~~-~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~----- 164 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCP-ST-STEERSILYSNRAAALIKLRKWESAIEDCSKAIELN----- 164 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCc-cc-cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-----
Confidence 45788999999999999999999999999999983 34 447778888899999999999999999999998773
Q ss_pred hHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 008796 438 IPTQIWALSVLTALYQQLGDRGNEMENDEYR 468 (553)
Q Consensus 438 ~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a 468 (553)
+.=-.++.--+.+|.....++.|.+-|...
T Consensus 165 -pty~kAl~RRAeayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 165 -PTYEKALERRAEAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred -chhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 222334455577888887788777655443
No 227
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.52 E-value=24 Score=41.52 Aligned_cols=117 Identities=16% Similarity=0.009 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHH-HHHHHHHHhhCC
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFL-ENKVAVELTRSG 254 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lL-enLg~~~l~~Gr 254 (553)
-.-|+..-.+...|+.=+-++-++||++- .|.|+..+ .++-+++.----++..| +..|.-....|.
T Consensus 655 a~alik~elydkagdlfeki~d~dkale~-----fkkgdaf~--------kaielarfafp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHDFDKALEC-----FKKGDAFG--------KAIELARFAFPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhCHHHHHHH-----HHcccHHH--------HHHHHHHhhCcHHHhhHHHHHhHHHHHHHh
Confidence 34556666666666544444444555544 34444444 33333332111234444 445555566799
Q ss_pred HHHHHHHHHHHHHHHHHC-------------------CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008796 255 FVEAQEALVQMKNWFIRF-------------------PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEA 307 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~-------------------~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~A 307 (553)
++.|+.+|-.|-.+.... .| +...+--+-.+...+.+.|+|+.|++.|.+|
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqd--qk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQD--QKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhh--hccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 999998887765443331 11 1111223344566667788888888888754
No 228
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=2.7 Score=45.43 Aligned_cols=223 Identities=13% Similarity=0.096 Sum_probs=115.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHHH----------HHHHHHCCchhhhhHHHHHHHHHHH----------HHHcCCHHHHHHH
Q 008796 244 NKVAVELTRSGFVEAQEALVQM----------KNWFIRFPTILQACESMIEMLRGQY----------AHSVGCYSEAAFH 303 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qA----------L~L~r~~~dl~~~~~A~~~~lLG~~----------~~alG~yeeAl~~ 303 (553)
||++|....|.|.||......| ..+..+++|- .-..+.|..||.. +...-.|.+|...
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE--k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE--KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH--HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677777777777776655443 2223334441 1112233333322 2222345555555
Q ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHh-hcccccccccccchhHHHHHHHHH-----------HHHH
Q 008796 304 YVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDL-IGPVYQMKDTINGVREEASLHFAY-----------GLLL 371 (553)
Q Consensus 304 f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L-~r~lgd~~g~~~~lr~eA~aL~~L-----------G~~~ 371 (553)
|.+-| .+...--..++++|.+|....-|+-...-|+. .+..+|++ ...+-+|..++.+ -++-
T Consensus 174 YkrvL---~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt---iA~NLkacn~fRl~ngr~ae~E~k~lad 247 (557)
T KOG3785|consen 174 YKRVL---QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST---IAKNLKACNLFRLINGRTAEDEKKELAD 247 (557)
T ss_pred HHHHH---hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH---HHHHHHHHHHhhhhccchhHHHHHHHHh
Confidence 54332 22222334567889999887666653333332 33443332 1111122222221 1111
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhccChHhH-------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHH
Q 008796 372 MRQQDFQEARNRLAKGLQIAHNHMGNLQLV-------SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWA 444 (553)
Q Consensus 372 ~~qGr~~EA~~~L~eAL~Lar~elGdr~le-------A~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~a 444 (553)
--..+|+.+...++.-|.+++...|-.+.. ..+..+|.--|+.+||.. .|..+.+++.-..-+-..
T Consensus 248 N~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVq-------eA~~L~Kdl~PttP~Eyi 320 (557)
T KOG3785|consen 248 NIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQ-------EAISLCKDLDPTTPYEYI 320 (557)
T ss_pred cccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHH-------HHHHHHhhcCCCChHHHH
Confidence 112346677777777776665433333322 234455666677777754 556677777654444444
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhHHHHhh
Q 008796 445 LSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAY 483 (553)
Q Consensus 445 L~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~~~~~A~ 483 (553)
+. |-++.+.|+--...|+...+..+++-++..-.+|.
T Consensus 321 lK--gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 321 LK--GVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred HH--HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 43 44777888877778888888888777665544443
No 229
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.35 E-value=7.5 Score=48.26 Aligned_cols=170 Identities=16% Similarity=0.090 Sum_probs=116.8
Q ss_pred HHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh-----hHHHHHHHHHHHHHHhCChHH----H
Q 008796 267 NWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-----MQAMCHAYAAVSYFCIGDAES----S 337 (553)
Q Consensus 267 ~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~-----g~A~aL~NLA~vyl~~Gd~e~----~ 337 (553)
.+.+..|+ .+.....-=.+....+..+.|.+.+++||....-+. ..=.++.|+=..| |..+. +
T Consensus 1449 rlvrssPN-----SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVF 1520 (1710)
T KOG1070|consen 1449 RLVRSSPN-----SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVF 1520 (1710)
T ss_pred HHHhcCCC-----cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHH
Confidence 45566787 122222222344568899999999999999773333 3445666666666 54443 5
Q ss_pred HHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCC
Q 008796 338 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD 417 (553)
Q Consensus 338 ~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd 417 (553)
++|-....+. .++..|.-+|...+.+++|-+.|+.-++-++ + +..+....|...+.+.+
T Consensus 1521 eRAcqycd~~--------------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q------~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1521 ERACQYCDAY--------------TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-Q------TRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HHHHHhcchH--------------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-c------hhhHHHHHHHHHhcccH
Confidence 5655544433 4566778889999999999999999888763 2 33467788888888888
Q ss_pred hHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 418 TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 418 ~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
-++|+..+.+||.-.-+.. ......-.+.+.-..||+++++..|+...
T Consensus 1580 ~~aa~~lL~rAL~~lPk~e----Hv~~IskfAqLEFk~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQE----HVEFISKFAQLEFKYGDAERGRTLFEGLL 1627 (1710)
T ss_pred HHHHHHHHHHHHhhcchhh----hHHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence 8899999999998766622 22334456667788899988877666543
No 230
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.59 E-value=0.24 Score=31.04 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
.+++.+|.++...|++++|...+++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999876
No 231
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=91.47 E-value=25 Score=38.49 Aligned_cols=176 Identities=15% Similarity=0.034 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
...-.+.=+.|+. |+|+-|..+|+...+=.+ ... .... -+-.+|..+.+.+..+.
T Consensus 209 ~q~R~LAD~aFml-~Dy~~A~s~Y~~~k~Df~-------~Dk---------aw~~--------~A~~~Em~alsl~~~~~ 263 (414)
T PF12739_consen 209 AQMRRLADLAFML-RDYELAYSTYRLLKKDFK-------NDK---------AWKY--------LAGAQEMAALSLLMQGQ 263 (414)
T ss_pred HHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHh-------hch---------hHHH--------HHhHHHHHHHHHHhcCC
Confidence 3333333334443 667998888887766421 111 1122 34455667777777764
Q ss_pred H-------HHHHHHHHHHHHHHHHCCc---hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cchh---hHHHH
Q 008796 255 F-------VEAQEALVQMKNWFIRFPT---ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-ESKS---MQAMC 320 (553)
Q Consensus 255 ~-------aeAl~~l~qAL~L~r~~~d---l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~-~d~~---g~A~a 320 (553)
. ++...+++.|+..|...+. -.....-++..+.+.+....|.|.+|...+.+..... .+.. |.|..
T Consensus 264 ~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~all 343 (414)
T PF12739_consen 264 SISAKIRKDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALL 343 (414)
T ss_pred CCccccccccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHH
Confidence 4 4888999999999998321 1112455677778888899999999998888776642 2222 36777
Q ss_pred HHHHHHHH--HHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 321 HAYAAVSY--FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAY-GLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 321 L~NLA~vy--l~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~L-G~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
+=.+|.+| +... .+. + .+....++.-+.+| |.-+...|....|.++|.+|+.++.
T Consensus 344 lE~~a~~~~~~~~~------------~~~---~--~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 344 LEQAAYCYASLRSN------------RPS---P--GLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHhhcccccC------------CCC---c--cchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 77777777 2210 110 0 11223366777777 7788899999999999999999983
No 232
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.44 E-value=16 Score=37.06 Aligned_cols=117 Identities=16% Similarity=0.069 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhC----ChHHHHHHHHhhccccccc
Q 008796 280 ESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG----DAESSSQAIDLIGPVYQMK 351 (553)
Q Consensus 280 ~A~~~~lLG~~~~a----lG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~G----d~e~~~qAL~L~r~lgd~~ 351 (553)
.+.+...+|..+.. ..++.+|..+|.+|.+. +...+ +.+..++|..|..-+ -.....+|+..+...-
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa--- 182 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA--- 182 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH---
Confidence 45566778888775 44899999999988854 33222 677889999997732 1111446666666541
Q ss_pred ccccchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC
Q 008796 352 DTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 416 (553)
Q Consensus 352 g~~~~lr~eA~aL~~LG~~~~~----qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG 416 (553)
..+-..+.+.+|..|.. .-++.+|...|.+|- +.|+ ..+...+| ++...|
T Consensus 183 -----~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa-----~~g~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 183 -----ELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA-----EQGD----GAACYNLG-LMYLNG 236 (292)
T ss_pred -----HhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH-----HCCC----HHHHHHHH-HHHhcC
Confidence 11245677888977755 237899999999883 4555 55677788 777666
No 233
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=91.42 E-value=24 Score=38.28 Aligned_cols=173 Identities=13% Similarity=0.005 Sum_probs=119.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
...||...+..|.++.|+.+|..|++. .|+. -++....+.++.++|+-.-|+.-+.+.|.+--| -+-+.
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~---dp~~-----Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD---F~~AR 109 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG---DPNN-----YQAIFRRATVYLAMGKSKAALQDLSRVLELKPD---FMAAR 109 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC---Cchh-----HHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc---HHHHH
Confidence 345677778899999999999999876 4552 346778899999999999999999877766444 44456
Q ss_pred HHHHHHHHHhCChHHHHHHHHhhcccccccccc---------cchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 322 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTI---------NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~---------~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
..-|.+++.+|++++.+.-. +.+.+...+. ..+-.+-..+.....-+.-.|+++.|.+...+-|++.
T Consensus 110 iQRg~vllK~Gele~A~~DF---~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~- 185 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADF---DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ- 185 (504)
T ss_pred HHhchhhhhcccHHHHHHHH---HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-
Confidence 66788889999877632222 2221111100 1111122334444555667799999999999999885
Q ss_pred HhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 008796 393 NHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 435 (553)
Q Consensus 393 ~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl 435 (553)
.+-|.....-+..|.+.|++..|+.-++.|-.+....
T Consensus 186 ------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 186 ------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred ------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 4555566667888999999999998888877665443
No 234
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=2.9 Score=44.25 Aligned_cols=181 Identities=13% Similarity=0.054 Sum_probs=111.1
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 329 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl 329 (553)
+.--+|..|++.+..-. ++.|.. +. .+..+|.++.....|.+|..+|.+--..+ .-.+.-...-|....
T Consensus 21 I~d~ry~DaI~~l~s~~---Er~p~~-rA----gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSEL---ERSPRS-RA----GLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQSLY 89 (459)
T ss_pred HHHhhHHHHHHHHHHHH---hcCccc-hH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHH
Confidence 44566777776655432 334531 22 46789999999999999999998432222 112222223333333
Q ss_pred HhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHH
Q 008796 330 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 409 (553)
Q Consensus 330 ~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG 409 (553)
..|.+. .||....-++|.. .+ ...++..-+-+....|++.-++...++ .-. ..+|.++++.|
T Consensus 90 ~A~i~A---DALrV~~~~~D~~----~L--~~~~lqLqaAIkYse~Dl~g~rsLveQ--------lp~-en~Ad~~in~g 151 (459)
T KOG4340|consen 90 KACIYA---DALRVAFLLLDNP----AL--HSRVLQLQAAIKYSEGDLPGSRSLVEQ--------LPS-ENEADGQINLG 151 (459)
T ss_pred HhcccH---HHHHHHHHhcCCH----HH--HHHHHHHHHHHhcccccCcchHHHHHh--------ccC-CCccchhccch
Confidence 444443 3343333333321 22 223344444455556666665543322 111 36788999999
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 410 NLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 410 ~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
.+....|++++|..-+..|++.. |-.+. ...+++-+|-..|++++|+++-
T Consensus 152 CllykegqyEaAvqkFqaAlqvs---Gyqpl---lAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVS---GYQPL---LAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhc---CCCch---hHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999874 44444 3457788899999999998764
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.32 E-value=3.5 Score=38.92 Aligned_cols=90 Identities=18% Similarity=0.085 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
+..++.-|.-....|+|++|..+|+.=....--..--..+...||.+|...|+++....+.+-+-++.-.+ . ..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h----p--~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH----P--NV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----C--Cc
Confidence 55778889999999999999999984433333333355888999999999999998555555554442111 1 14
Q ss_pred HHHHHHHHHHHHHcCC
Q 008796 361 ASLHFAYGLLLMRQQD 376 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr 376 (553)
-.+++..|+.++.+.+
T Consensus 84 dYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDE 99 (142)
T ss_pred cHHHHHHHHHHHHHhh
Confidence 6899999999999876
No 236
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.10 E-value=16 Score=42.16 Aligned_cols=189 Identities=11% Similarity=0.008 Sum_probs=127.7
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Q 008796 249 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 328 (553)
Q Consensus 249 ~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vy 328 (553)
....+.|...++.+.+-+.-+-++|+ .+...|+....+|+-++|....+.+++ .-..--+|..-+|+++
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHge--------slAmkGL~L~~lg~~~ea~~~vr~glr---~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGE--------SLAMKGLTLNCLGKKEEAYELVRLGLR---NDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccch--------hHHhccchhhcccchHHHHHHHHHHhc---cCcccchhHHHHHHHH
Confidence 35677888888888888874444444 556789999999999999999987775 2223347888889998
Q ss_pred HHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHH
Q 008796 329 FCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 404 (553)
Q Consensus 329 l~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~a 404 (553)
...-+|++ |..||.+-... -..|..++++..+.|+|+-....=.+=|++.- ++ =..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN-------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~---~~----ra~ 145 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDN-------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRP---SQ----RAS 145 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCc-------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh---hh----HHH
Confidence 88777776 77777653221 25678888888888888877766666665531 11 123
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHH--HHHHHHHHHHHHcCCchHHHHHHHHH
Q 008796 405 LTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI--WALSVLTALYQQLGDRGNEMENDEYR 468 (553)
Q Consensus 405 L~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa--~aL~~Lg~ly~alGd~~~A~e~~e~a 468 (553)
....+-.+.-.|++..|...++.--....+..+..... .+..--..++...|..++|.++....
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 44555566666777777777666655555555544333 33344445788888888888877543
No 237
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.06 E-value=32 Score=39.03 Aligned_cols=217 Identities=15% Similarity=0.085 Sum_probs=134.6
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH-H
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH-A 322 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL-~ 322 (553)
+-+......|+...|+..++-+++ ++ .....+.+..-+|+.+..+.+|..|...|. ...+.+.+..|. .
T Consensus 272 ~~ar~l~~~g~~eaa~~~~~~~v~-----~~-~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~----~L~desdWS~a~Y~ 341 (546)
T KOG3783|consen 272 MEARILSIKGNSEAAIDMESLSIP-----IR-MKQVKSLMVFERAWLSVGQHQYSRAADSFD----LLRDESDWSHAFYT 341 (546)
T ss_pred HHHHHHHHcccHHHHHHHHHhccc-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHhhhhhhHHHHH
Confidence 334444666777777777777777 22 234466788899999999999999999998 666655444332 2
Q ss_pred HHH-HHH-----HH---hCChHH----HHHHHHhhccccccc--ccccc-------hhHHHHHHHH-----HHHHHHHcC
Q 008796 323 YAA-VSY-----FC---IGDAES----SSQAIDLIGPVYQMK--DTING-------VREEASLHFA-----YGLLLMRQQ 375 (553)
Q Consensus 323 NLA-~vy-----l~---~Gd~e~----~~qAL~L~r~lgd~~--g~~~~-------lr~eA~aL~~-----LG~~~~~qG 375 (553)
.++ -++ -+ .|+-+. ...+-++++..++.. ..+.. .+..+++... .=.+|+..|
T Consensus 342 Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wng 421 (546)
T KOG3783|consen 342 YFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNG 421 (546)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhh
Confidence 222 111 11 122222 333334444322110 00000 0000011111 123444444
Q ss_pred CHHHHHHHHH---HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHH-HHHHHhCChHHHHHHHHHHHHH
Q 008796 376 DFQEARNRLA---KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSL-TLAKKLYDIPTQIWALSVLTAL 451 (553)
Q Consensus 376 r~~EA~~~L~---eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL-~LArklgD~~~qa~aL~~Lg~l 451 (553)
=..-..+.+. ..+..- .+-|.-.++.-...+|.+..++|+...|..++...+ ...++-.|.+.+-.|+..||-+
T Consensus 422 f~~~s~~~l~k~~~~~~~~--~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l 499 (546)
T KOG3783|consen 422 FSRMSKNELEKMRAELENP--KIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALL 499 (546)
T ss_pred cccCChhhHHHHHHHHhcc--CCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 3333334443 333332 344777888889999999999999999999998887 3466778999999999999999
Q ss_pred HHHcCC-chHHHHHHHHHHHHH
Q 008796 452 YQQLGD-RGNEMENDEYRRKKL 472 (553)
Q Consensus 452 y~alGd-~~~A~e~~e~a~~~~ 472 (553)
|...|. ..++..++..+....
T Consensus 500 ~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 500 YWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHhcccChHHHHHHHHHHHhhc
Confidence 999999 788888888877766
No 238
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.03 E-value=0.45 Score=35.02 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
.+++.+|.+|..+|++++|++.|+++++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999984
No 239
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.30 E-value=3.8 Score=41.50 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q 008796 377 FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 456 (553)
Q Consensus 377 ~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alG 456 (553)
-...++.|.+|...+. ..+..+........||..|...|+++.|...++++....++-|=...-..++..|.+.+...|
T Consensus 154 s~~iI~lL~~A~~~f~-~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFK-KYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 4467889999999985 688889999999999999999999999999999999999999988888999999999999999
Q ss_pred CchHHHHH
Q 008796 457 DRGNEMEN 464 (553)
Q Consensus 457 d~~~A~e~ 464 (553)
+.+.....
T Consensus 233 ~~~~~l~~ 240 (247)
T PF11817_consen 233 DVEDYLTT 240 (247)
T ss_pred CHHHHHHH
Confidence 98876543
No 240
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.12 E-value=25 Score=36.16 Aligned_cols=118 Identities=12% Similarity=-0.004 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008796 173 VYALVDLMVVILGRPKG-LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 251 (553)
Q Consensus 173 ~~~Lv~l~tv~~~~~~G-~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~ 251 (553)
-.+-+|+-.+.....++ ++++|.++.++|.+++ ++.+.... .. .-+.-|++.+|..|+.+++.
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l----~~~~~~~~-~~-----------~~~~elr~~iL~~La~~~l~ 96 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL----EKPGKMDK-LS-----------PDGSELRLSILRLLANAYLE 96 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH----Hhhhhccc-cC-----------CcHHHHHHHHHHHHHHHHHc
Confidence 34555666666666677 9999999999999994 44221111 00 11234599999999999999
Q ss_pred hCCHHHHHHHHHHHHHHH-HHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 008796 252 RSGFVEAQEALVQMKNWF-IRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 312 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~-r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~ 312 (553)
.+.++...+ ..++++.. .++|+......-.+....+ .++.+++.+.+.+.+.-..
T Consensus 97 ~~~~~~~~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~-----~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 97 WDTYESVEK-ALNALRLLESEYGNKPEVFLLKLEILLK-----SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred CCChHHHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHhc-----cCChhHHHHHHHHHHHhcc
Confidence 998876655 34444444 4467732211111122222 7888888888887776544
No 241
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=90.06 E-value=4.1 Score=50.45 Aligned_cols=188 Identities=16% Similarity=0.111 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHhCChHH---HHHHHHhhcccc---
Q 008796 278 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAES---SSQAIDLIGPVY--- 348 (553)
Q Consensus 278 ~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~A~aL~NLA~vyl~~Gd~e~---~~qAL~L~r~lg--- 348 (553)
.+.++..-.+|.++.-.|++.+|+.+|.+|+..++. .-+.|.|+=.++.+....+-.+. .-+.+..+-+..
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 456788899999999999999999999999987644 55677777666665554443321 111111110000
Q ss_pred -------------cccccccchhHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHH
Q 008796 349 -------------QMKDTINGVREEAS-LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 414 (553)
Q Consensus 349 -------------d~~g~~~~lr~eA~-aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~la 414 (553)
..++++.+....+. .....-..-.-...+++|+.+|.++..... +-......+.+...++.+...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~-~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTS-EYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccc-ccCcchHHHHHHHHHHHHHHH
Confidence 00000000000000 001111122222347888888888876653 445556789999999999999
Q ss_pred CC--------------------ChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 008796 415 LH--------------------DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDE 466 (553)
Q Consensus 415 lG--------------------d~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e 466 (553)
.. ...++.+.+.+|+.+.-+.-+...|+..+..|+.+|...|=.-++.=..+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR 469 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLR 469 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 98 78899999999999988777899999999999999999998866643333
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.04 E-value=5 Score=44.46 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=92.6
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Q 008796 249 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 328 (553)
Q Consensus 249 ~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vy 328 (553)
.+.+++++++.+.+. +-+++..+|. ...+.+-.+....|.++.|+.. .+|+.-.- .| .
T Consensus 271 av~~~d~~~v~~~i~-~~~ll~~i~~-------~~~~~i~~fL~~~G~~e~AL~~-------~~D~~~rF----eL---A 328 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIA-ASNLLPNIPK-------DQGQSIARFLEKKGYPELALQF-------VTDPDHRF----EL---A 328 (443)
T ss_dssp HHHTT-HHH-----H-HHHTGGG--H-------HHHHHHHHHHHHTT-HHHHHHH-------SS-HHHHH----HH---H
T ss_pred HHHcCChhhhhhhhh-hhhhcccCCh-------hHHHHHHHHHHHCCCHHHHHhh-------cCChHHHh----HH---H
Confidence 467888888777662 2233334443 1345666777888888777654 33432211 11 1
Q ss_pred HHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHH
Q 008796 329 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 408 (553)
Q Consensus 329 l~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~L 408 (553)
+..|+ ++.|+++..++. .-..|..||.+.+.+|+++-|..+|.++=... .|
T Consensus 329 l~lg~---L~~A~~~a~~~~-----------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~---------------~L 379 (443)
T PF04053_consen 329 LQLGN---LDIALEIAKELD-----------DPEKWKQLGDEALRQGNIELAEECYQKAKDFS---------------GL 379 (443)
T ss_dssp HHCT----HHHHHHHCCCCS-----------THHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH---------------HH
T ss_pred HhcCC---HHHHHHHHHhcC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc---------------cc
Confidence 22344 557888888772 23589999999999999999999998875443 46
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH------HHHHcCCchHHH
Q 008796 409 GNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA------LYQQLGDRGNEM 462 (553)
Q Consensus 409 G~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~------ly~alGd~~~A~ 462 (553)
.-+|...|+. +.+++-..+|.+.|+......+...+|+ +....|+..+|.
T Consensus 380 ~lLy~~~g~~----~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~ 435 (443)
T PF04053_consen 380 LLLYSSTGDR----EKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAA 435 (443)
T ss_dssp HHHHHHCT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHhCCH----HHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHH
Confidence 7778888885 4555556778888887776666655544 445555555443
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.94 E-value=0.52 Score=31.59 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
.+++.+|.++...|++++|++.|++.++.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 37899999999999999999999998864
No 244
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.80 E-value=16 Score=39.64 Aligned_cols=171 Identities=15% Similarity=0.111 Sum_probs=97.8
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 329 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl 329 (553)
+...+|..|+..++-.+.+-+ ..+..+..-+|..+..+|+|++|++.|..+.. ..+ .-+..-+|||-++.
T Consensus 33 ls~rDytGAislLefk~~~~~-------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~~~--~~~el~vnLAcc~F 102 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDR-------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-KDD--APAELGVNLACCKF 102 (557)
T ss_pred HhcccchhHHHHHHHhhccch-------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-cCC--CCcccchhHHHHHH
Confidence 556788888888887774433 33455667789999999999999999986554 222 23345567788887
Q ss_pred HhCChHHHHHHHHh--------------hccccccc--ccc-cchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 330 CIGDAESSSQAIDL--------------IGPVYQMK--DTI-NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 330 ~~Gd~e~~~qAL~L--------------~r~lgd~~--g~~-~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
-.|.|.+..++.+- ...++|-. ..+ .++.+...--..++.+++..-.|+||.+.|.+.|.-.+
T Consensus 103 yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 77777653222211 11111100 000 11111223345566667666667777777766665542
Q ss_pred HhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 393 NHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 393 ~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
+ ..| .-+.++-.|..+.-++-+.+.+.-= .+..||-..
T Consensus 183 e------y~a-lNVy~ALCyyKlDYydvsqevl~vY---L~q~pdSti 220 (557)
T KOG3785|consen 183 E------YIA-LNVYMALCYYKLDYYDVSQEVLKVY---LRQFPDSTI 220 (557)
T ss_pred h------hhh-hHHHHHHHHHhcchhhhHHHHHHHH---HHhCCCcHH
Confidence 1 111 2345666777776665555554422 355666554
No 245
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.72 E-value=37 Score=37.66 Aligned_cols=180 Identities=7% Similarity=-0.159 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh--hHHHHHHHHHHHHHHhCChHH-HHHHHHhhcccccccccccch
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--MQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGV 357 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~--g~A~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~l 357 (553)
..+...+|.-...+|....+...... -..+.-.. .+-..+...+.+-.+ +.+.. +..++...-.+ +.
T Consensus 200 q~al~s~a~~~a~qg~~ql~~v~L~h-Kqrfp~~~~~a~~wml~d~~~v~~~-~~~~~~~h~al~~~~g~--------d~ 269 (482)
T KOG4322|consen 200 QLALGSIAVSRSSQGIEQLTQVQLEH-KQRFPCALPLAMKWMLHDLLEVEEN-NLNTSYYHKALNSWFGG--------DY 269 (482)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHH-HHhcCCCcHHHHHHHHHHhHHHHHh-hhhhhHHHHHHHHhhcc--------hH
Confidence 33445555555666666655555543 22332211 222333333444333 22222 55555555444 22
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD 437 (553)
......++.-+.++....++.+|.+.+.+..--++ -..+....+.+|..+++++..-|....+.-++-.+....++-.-
T Consensus 270 ~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~-k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~l 348 (482)
T KOG4322|consen 270 QQSVENLCRFAHILHADEQVSYAYALLNKLMVQCD-KGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSL 348 (482)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhcc
Confidence 33556777788999999999999999999988885 35567888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 438 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 438 ~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
....+.+-..|+..+..+|-|++|.+....+...
T Consensus 349 dyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~ 382 (482)
T KOG4322|consen 349 DYLEANENLDLALEHLALGSPKAALPLLHTAVHL 382 (482)
T ss_pred chhhhhchHHHHHHHHHcCChHHHHHHHHhhhhH
Confidence 9999999999999999999999999888766543
No 246
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.29 E-value=6 Score=40.33 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccch
Q 008796 278 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGV 357 (553)
Q Consensus 278 ~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~l 357 (553)
...|.+|.-.|-++-++|-.+-|.--|.+|+.+. ...+.+.|.+|+-+...|+++..-.|.+-.=++ |+.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~------ 131 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPT------ 131 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCc------
Confidence 4568899999999999999999999999999874 456788999999999999988744444444344 221
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAK 386 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~e 386 (553)
--++..|-|.....-|||+-|.+-+.+
T Consensus 132 --y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 132 --YNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred --chHHHhccceeeeecCchHhhHHHHHH
Confidence 225667777777777888777766543
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.17 E-value=4.5 Score=38.20 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
-|.+-|.-.+..|+|.+|++.++. |-.++|- .....++...||..+...++|++|.+.+.+=+++.-.......+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~---L~~ryP~--g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEA---LDTRYPF--GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH---HHhcCCC--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 356778888999999999888874 4566776 35567899999999999999999999999888888777788899
Q ss_pred HHHHHHHHHHhCC
Q 008796 321 HAYAAVSYFCIGD 333 (553)
Q Consensus 321 L~NLA~vyl~~Gd 333 (553)
+.-.|+++..+.+
T Consensus 87 ~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 87 YYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.75 E-value=22 Score=40.14 Aligned_cols=167 Identities=14% Similarity=0.026 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHHHHHHC-Cc------------h----hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhh
Q 008796 254 GFVEAQEALVQMKNWFIRF-PT------------I----LQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM 316 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~-~d------------l----~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g 316 (553)
-..||.+.+++|++..+.. +. . ...-...+...+++.+..+|+..||.++|+.=++... ...
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-~~~ 293 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-NLD 293 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-ccc
Confidence 3788999999999886652 11 0 0011245677899999999999999999997666543 224
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcC-C---------------HHHH
Q 008796 317 QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-D---------------FQEA 380 (553)
Q Consensus 317 ~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qG-r---------------~~EA 380 (553)
.-.+.-||-.+++..+.|++...-|+-+.++. +..-|...+.-+++-.+.. + --.|
T Consensus 294 ~l~IrenLie~LLelq~Yad~q~lL~kYdDi~--------lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~a 365 (539)
T PF04184_consen 294 NLNIRENLIEALLELQAYADVQALLAKYDDIS--------LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNA 365 (539)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc--------CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHH
Confidence 55688899999999999998777777765541 1113444444455443322 1 0123
Q ss_pred HHHHHHHHHHHHHhccChHhHHH-----HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC
Q 008796 381 RNRLAKGLQIAHNHMGNLQLVSQ-----YLTILGNLALALHDTVQAREILRSSLTLAKKLY 436 (553)
Q Consensus 381 ~~~L~eAL~Lar~elGdr~leA~-----aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg 436 (553)
.+.+++|++- |++.--. .|..-=+-.+..|| .||..+.--.|+-.+++.
T Consensus 366 veAi~RAvef------NPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~ve 419 (539)
T PF04184_consen 366 VEAIHRAVEF------NPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVE 419 (539)
T ss_pred HHHHHHHHHh------CCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCH
Confidence 4444444443 2222221 11111223456666 788888888888887764
No 249
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.46 E-value=0.51 Score=31.21 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAK 386 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~e 386 (553)
.+.+++|.++..+|++++|++.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678999999999999999998864
No 250
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.30 E-value=8.5 Score=38.02 Aligned_cols=135 Identities=17% Similarity=0.071 Sum_probs=99.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHCCc-------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 008796 246 VAVELTRSGFVEAQEALVQMKNWFIRFPT-------------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 312 (553)
Q Consensus 246 g~~~l~~Gr~aeAl~~l~qAL~L~r~~~d-------------l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~ 312 (553)
|.-+|..++-..+-+.|..||.+.++.+. -....-..+.+..|.+...-|+-.+|...|.+..+-+.
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~ 125 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS 125 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC
Confidence 34467888999999999999999887543 11122345667788888889999999999997766555
Q ss_pred chh-hHHHHHHHHHHHHHHhCChHH-HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 313 SKS-MQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 313 d~~-g~A~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
.+. +.-.+....|......|.|+. .++.-.|..+- . .. +..+--.||++...-|++..|+..|.+-..
T Consensus 126 ~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~-n------~m--R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 126 IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDG-N------PM--RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCC-C------hh--HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 544 457777888888888888888 44444444332 1 22 678888999999999999999999986544
No 251
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.09 E-value=0.7 Score=49.49 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=74.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 008796 183 ILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEAL 262 (553)
Q Consensus 183 ~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l 262 (553)
--+.-+|.|++|+.||.+++.. ...+ ..+.-|-+++++.+-+|+.|...-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~---------~P~N---------------------pV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV---------YPHN---------------------PVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc---------CCCC---------------------ccchhhHHHHHHHHHHHHHHHHhH
Confidence 3466789999999999999988 1111 222567788889999999999999
Q ss_pred HHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Q 008796 263 VQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 263 ~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d 313 (553)
..|+.+-+.+-. ++...|....++|...||..-++.+|++--.
T Consensus 155 ~~AiaLd~~Y~K--------AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 155 EAAIALDKLYVK--------AYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhhHHHHH--------HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 999998775433 6677888999999999999999999986544
No 252
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.46 E-value=1.1 Score=32.99 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 008796 402 SQYLTILGNLALALHDTVQAREILRSSLTLAKKL 435 (553)
Q Consensus 402 A~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl 435 (553)
|.++..||++.+..+++.+|..-+++||.+-+++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999998776
No 253
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.43 E-value=51 Score=36.43 Aligned_cols=245 Identities=15% Similarity=0.070 Sum_probs=149.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
|+.|+-.--.+..|+++++.+-|+..+.- -+.+.+| |..|=.-.-+.|..
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~d--PEtRllG----------------------------LRgLyleAqr~Gar 170 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLDD--PETRLLG----------------------------LRGLYLEAQRLGAR 170 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhcC--hHHHHHh----------------------------HHHHHHHHHhcccH
Confidence 67788888889999999999999887765 1123333 22222333567899
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cc--hhhHHHHHHHHHHHHHH
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ES--KSMQAMCHAYAAVSYFC 330 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~---~d--~~g~A~aL~NLA~vyl~ 330 (553)
..|+.|.++|-+...+.|=. ....|+ ..+..|+.+.|+.....+.... .+ ....|..|..-+...+.
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA-------~~AtLe-~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWA-------ARATLE-ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHHHHHHHHHhhccCCchH-------HHHHHH-HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 99999998888776554441 111223 2356889999988887665422 22 12344445444444444
Q ss_pred hCChHH----HHHHHH---------------hhcccccccccc-cchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 331 IGDAES----SSQAID---------------LIGPVYQMKDTI-NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 331 ~Gd~e~----~~qAL~---------------L~r~lgd~~g~~-~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
.. +.+ ..+|+. ++++-.-+.+.. ...-.++.-+=.++.+|.+..--+.|+..+.++-++
T Consensus 243 ad-p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L 321 (531)
T COG3898 243 AD-PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKL 321 (531)
T ss_pred CC-hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 22 221 222222 233221111100 000011222334666666666667788888888888
Q ss_pred HHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Q 008796 391 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL-GDRGNEMENDEYRR 469 (553)
Q Consensus 391 ar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~al-Gd~~~A~e~~e~a~ 469 (553)
. .+- ..-+.++....+..+..|++..|+.-.+.+...+.. ..++.+|+++-.+. ||-++......++.
T Consensus 322 ~--slk--~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-------es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 322 E--SLK--PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-------ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred H--hcC--ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-------hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 5 232 334567788899999999999999888877766432 23667888988877 99999888776665
Q ss_pred H
Q 008796 470 K 470 (553)
Q Consensus 470 ~ 470 (553)
+
T Consensus 391 ~ 391 (531)
T COG3898 391 K 391 (531)
T ss_pred c
Confidence 5
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.32 E-value=1.2 Score=32.82 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 403 QYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 403 ~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
.++..||.+|..+|++++|++++++++...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 367889999999999999999999999863
No 255
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.31 E-value=1.3 Score=47.46 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
+.-+---|.-|+.||.|+||.+||.++..+. --| +-...+-+.+|+.+..+..|+.-+..|+.+- +++.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~---P~N----pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd----~~Y~ 165 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVY---PHN----PVYHINRALAYLKQKSFAQAEEDCEAAIALD----KLYV 165 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccC---CCC----ccchhhHHHHHHHHHHHHHHHHhHHHHHHhh----HHHH
Confidence 3445667888999999999999999998875 122 2234567788999999999999999988873 3444
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH---HHHhhHHHHhhcchhhHHHHhhh
Q 008796 441 QIWALSVLTALYQQLGDRGNEMENDEYRRKKL---DELQKRLADAYSSIHHIELISKV 495 (553)
Q Consensus 441 qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~---d~L~~~~~~A~~~~~h~~l~~~~ 495 (553)
.+.+. -+.+...+|...+|-+-++..+++- .+|-. ...+..|+.-..|+.+.
T Consensus 166 KAYSR--R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK-~~a~i~Sl~E~~I~~Ks 220 (536)
T KOG4648|consen 166 KAYSR--RMQARESLGNNMEAKKDCETVLALEPKNIELKK-SLARINSLRERKIATKS 220 (536)
T ss_pred HHHHH--HHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHH-HHHHhcchHhhhHHhhc
Confidence 43333 2334456666666666666555442 23322 33444566666677773
No 256
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.21 E-value=7.7 Score=40.71 Aligned_cols=223 Identities=10% Similarity=0.005 Sum_probs=128.8
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-------hhhHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-------KSMQAMCHA 322 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-------~~g~A~aL~ 322 (553)
+...++.+|+.-|...+++--+-|+. +.- ++-..--....+|+|++-...|.+-|.-.++ ....-..+.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeW--GFK--ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlD 113 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEW--GFK--ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILD 113 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchh--HHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 56679999999999999997665552 111 1222222334455555555555544442222 111112222
Q ss_pred HHHHHHHHhCChHH-HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC----
Q 008796 323 YAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN---- 397 (553)
Q Consensus 323 NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd---- 397 (553)
.+... ...+=..+ |+..|+.++....- .++.+++ .-+|.+++..|+|..-...+.+--.-+..+.|.
T Consensus 114 yiStS-~~m~LLQ~FYeTTL~ALkdAKNe-----RLWFKTN--tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k 185 (440)
T KOG1464|consen 114 YISTS-KNMDLLQEFYETTLDALKDAKNE-----RLWFKTN--TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK 185 (440)
T ss_pred HHhhh-hhhHHHHHHHHHHHHHHHhhhcc-----eeeeecc--chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh
Confidence 22211 01111112 55555555543110 1112232 468999999999987766666655555434443
Q ss_pred ---hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHHH
Q 008796 398 ---LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE-MENDEYRRKKLD 473 (553)
Q Consensus 398 ---r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A-~e~~e~a~~~~d 473 (553)
..++-.+|- =.+|..+.+...--..|++||.+-..++.+..-.....-=|..|.+.|+.++| -+.|+..++.-+
T Consensus 186 KGtQLLEiYAlE--IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 186 KGTQLLEIYALE--IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred ccchhhhhHhhH--hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 233333332 35688888888888999999999999999887776666667788888888777 456666666555
Q ss_pred HHhhHHHHhhcch
Q 008796 474 ELQKRLADAYSSI 486 (553)
Q Consensus 474 ~L~~~~~~A~~~~ 486 (553)
+=..|...|..-.
T Consensus 264 sGspRRttCLKYL 276 (440)
T KOG1464|consen 264 SGSPRRTTCLKYL 276 (440)
T ss_pred cCCcchhHHHHHH
Confidence 5555555555433
No 257
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.14 E-value=22 Score=39.98 Aligned_cols=220 Identities=14% Similarity=0.141 Sum_probs=140.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 008796 187 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMK 266 (553)
Q Consensus 187 ~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL 266 (553)
..-+.+...+.++..|+. +-+..++-+ .+| -.| +...+++-+...|.+.+..|+
T Consensus 378 e~ed~ertr~vyq~~l~l----IPHkkFtFa---------KiW--lmy-----------A~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL----IPHKKFTFA---------KIW--LMY-----------AQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred HhhhHHHHHHHHHHHHhh----cCcccchHH---------HHH--HHH-----------HHHHHHHcccHHHHHHHHHHh
Confidence 456789999999999998 778788776 466 122 334577788888888888888
Q ss_pred HHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHH--HHHHhh
Q 008796 267 NWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSS--QAIDLI 344 (553)
Q Consensus 267 ~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~--qAL~L~ 344 (553)
-.|=...- +.. .+ ..-..++.++.....|++=+.- ...-..+...-|-.-...|+.+... =-|++.
T Consensus 432 G~cPK~Kl-Fk~---YI-----elElqL~efDRcRkLYEkfle~---~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 432 GKCPKDKL-FKG---YI-----ELELQLREFDRCRKLYEKFLEF---SPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred ccCCchhH-HHH---HH-----HHHHHHhhHHHHHHHHHHHHhc---ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 77644322 221 11 2223467788888888754432 1222334445555556666665411 123445
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC--------
Q 008796 345 GPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH-------- 416 (553)
Q Consensus 345 r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG-------- 416 (553)
+|..|++ .+..+++.-|-. ..|+++.|+..|++-|.... .. ....+-+-...+......|
T Consensus 500 qp~ldmp----ellwkaYIdFEi-----~~~E~ekaR~LYerlL~rt~-h~--kvWisFA~fe~s~~~~~~~~~~~~~e~ 567 (677)
T KOG1915|consen 500 QPALDMP----ELLWKAYIDFEI-----EEGEFEKARALYERLLDRTQ-HV--KVWISFAKFEASASEGQEDEDLAELEI 567 (677)
T ss_pred CcccccH----HHHHHHhhhhhh-----hcchHHHHHHHHHHHHHhcc-cc--hHHHhHHHHhccccccccccchhhhhc
Confidence 6665554 454556555544 57999999999999998862 22 2666666677766666666
Q ss_pred ---ChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q 008796 417 ---DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 456 (553)
Q Consensus 417 ---d~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alG 456 (553)
....|+..++.|.+..++.++...-+..|......-..-|
T Consensus 568 ~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G 610 (677)
T KOG1915|consen 568 TDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFG 610 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 6678999999999999999986555544444444333333
No 258
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.61 E-value=14 Score=37.39 Aligned_cols=155 Identities=20% Similarity=0.134 Sum_probs=100.2
Q ss_pred HHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH-HHHHHHhhcccccccccccchhHHHHHHHHHHHH
Q 008796 292 HSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL 370 (553)
Q Consensus 292 ~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~ 370 (553)
...+.+..|...+..+.. .+.+.+..++|..|....--.. ...|++.++.. ...+.+.+.+.+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~-----~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--------a~~g~~~a~~~lg~~ 118 (292)
T COG0790 52 AYPPDYAKALKSYEKAAE-----LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--------AADGLAEALFNLGLM 118 (292)
T ss_pred cccccHHHHHHHHHHhhh-----cCChHHHHHHHHHHHhccCccccHHHHHHHHHHH--------hhcccHHHHHhHHHH
Confidence 346678888888876654 2333778888888877443333 77888887754 223356788889999
Q ss_pred HHH----cCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC-------ChHHHHHHHHHHHHHHHHhCChH
Q 008796 371 LMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH-------DTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 371 ~~~----qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG-------d~~eA~~~l~~AL~LArklgD~~ 439 (553)
+.. ..++.+|..+|++|-+. |+... +.+...||..|..-. +...|...+.+|-.. ++.
T Consensus 119 ~~~G~gv~~d~~~A~~~~~~Aa~~-----g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~----~~~- 187 (292)
T COG0790 119 YANGRGVPLDLVKALKYYEKAAKL-----GNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL----GNP- 187 (292)
T ss_pred HhcCCCcccCHHHHHHHHHHHHHc-----CChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh----cCH-
Confidence 988 44899999999988655 33222 566788888877642 223455555555443 333
Q ss_pred HHHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQ----LGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~a----lGd~~~A~e~~e~a~~~~d 473 (553)
.+-..||.+|.. .-|+.+|..+|..+...-+
T Consensus 188 ---~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 188 ---DAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred ---HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 344567777744 2366778877777665443
No 259
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=6.3 Score=40.83 Aligned_cols=99 Identities=15% Similarity=0.083 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---------hh------hHHHHHHHHHHHHHHhCChHH-HHHHHHhhcc
Q 008796 283 IEMLRGQYAHSVGCYSEAAFHYVEAAKITES---------KS------MQAMCHAYAAVSYFCIGDAES-SSQAIDLIGP 346 (553)
Q Consensus 283 ~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---------~~------g~A~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~ 346 (553)
++.--|--....|+|.||...|..|+...+. +. ...-.+.|.+.+++..|++-+ .+.+-++++.
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444555567799999999999999885533 11 134568899999999999776 6666666554
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 347 VYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 347 lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
-- + ---++|.-|.+|..--+.+||++-|..+|++-
T Consensus 260 ~~------~----nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 260 HP------G----NVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred CC------c----hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 31 1 23578999999999999999999999999883
No 260
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.14 E-value=7.5 Score=38.28 Aligned_cols=66 Identities=18% Similarity=0.071 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHH----CCchhhhhHHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 008796 239 MQFLENKVAVELTRSGF---VEAQEALVQMKNWFIR----FPTILQACESMIEMLRGQYAHSVG----CYSEAAFHYVEA 307 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~---aeAl~~l~qAL~L~r~----~~dl~~~~~A~~~~lLG~~~~alG----~yeeAl~~f~~A 307 (553)
+..|.+.|.+.+.+..+ .++.+.+++|+.-+++ .|+. ..+++++|.++.+++ +..+|..+|.+|
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 33466677777766555 4576777777777666 4662 346666666666655 334555555544
Q ss_pred HH
Q 008796 308 AK 309 (553)
Q Consensus 308 L~ 309 (553)
..
T Consensus 100 ~~ 101 (186)
T PF06552_consen 100 TE 101 (186)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 261
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.79 E-value=43 Score=35.60 Aligned_cols=201 Identities=11% Similarity=0.093 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
-+.+-+|+-++.+.|++..-.+.+.+..+.+..+... ...-.+..++-..-..-..++.-.......++-+ ++....
T Consensus 45 E~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~--k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA-~rEkr~ 121 (421)
T COG5159 45 EATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP--KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWA-DREKRK 121 (421)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch--hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHH-HHHHHH
Confidence 3445678899999999999999888888888887551 2223344455555555566676666666555433 222222
Q ss_pred HH----HHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 008796 319 MC----HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH 394 (553)
Q Consensus 319 ~a----L~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~e 394 (553)
+. -.-+...|+..|. |..||++++++..--+.+.+.-....++.--..+|+...+..+++.-++-|-..++.-
T Consensus 122 fLr~~Le~Kli~l~y~~~~---YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~ 198 (421)
T COG5159 122 FLRLELECKLIYLLYKTGK---YSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSA 198 (421)
T ss_pred HHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhcc
Confidence 22 2334445555555 5677777776532211112221235566667889999999999999999999999766
Q ss_pred ccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHH
Q 008796 395 MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWAL 445 (553)
Q Consensus 395 lGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL 445 (553)
-..++.+|+.=..=|-.+....|+..|-.++-+|++=+..+.+..-.+.++
T Consensus 199 YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sL 249 (421)
T COG5159 199 YCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSL 249 (421)
T ss_pred CCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHH
Confidence 667888887666666667777899999999999999887776655444444
No 262
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.56 E-value=0.93 Score=29.95 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHCCChHHHHHHHH
Q 008796 404 YLTILGNLALALHDTVQAREILR 426 (553)
Q Consensus 404 aL~~LG~i~lalGd~~eA~~~l~ 426 (553)
++..||.++..+||+++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666666654
No 263
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.23 E-value=9.5 Score=32.68 Aligned_cols=75 Identities=20% Similarity=0.150 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCCh
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 438 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~ 438 (553)
.|....--|+=++.+++.++|+...+++|+... + +..--.+|..|..+|...|++++++++..+=+.+|+++.|+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT-D---REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC-C---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344445556666777778888888888877653 2 33445567777777888888888777777777777777664
No 264
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.13 E-value=1.4 Score=27.27 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 008796 282 MIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 311 (553)
Q Consensus 282 ~~~~lLG~~~~alG~yeeAl~~f~~AL~l~ 311 (553)
.++..+|..+..+|++++|...|.++++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 367889999999999999999999888653
No 265
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=84.73 E-value=99 Score=37.23 Aligned_cols=162 Identities=13% Similarity=-0.011 Sum_probs=103.3
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q 008796 246 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA 325 (553)
Q Consensus 246 g~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA 325 (553)
|....++|+.++|... -+++..-....|. .+..+-.++..++.+++|...|+.|..-... -.-+..+=
T Consensus 50 aLsl~r~gk~~ea~~~-Le~~~~~~~~D~~-------tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~----eell~~lF 117 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKL-LEALYGLKGTDDL-------TLQFLQNVYRDLGKLDEAVHLYERANQKYPS----EELLYHLF 117 (932)
T ss_pred HHHHHHhcCchhHHHH-HhhhccCCCCchH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc----HHHHHHHH
Confidence 4445788999999944 4444443333332 4456667788899999999999988765544 33344455
Q ss_pred HHHHHhCChHH-HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHHHHHhccChH
Q 008796 326 VSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARN-----RLAKGLQIAHNHMGNLQ 399 (553)
Q Consensus 326 ~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~-----~L~eAL~Lar~elGdr~ 399 (553)
+.|.+.++|.+ -..|+.+....+.. .-+-|.++..+...+-.++++.. +.++.....-.+.|--.
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk~---------~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~ 188 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPKR---------AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIE 188 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcc---------cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccc
Confidence 68888888887 77888888876422 34677888888887777777776 12222211111224323
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 008796 400 LVSQYLTILGNLALALHDTVQAREILRSSL 429 (553)
Q Consensus 400 leA~aL~~LG~i~lalGd~~eA~~~l~~AL 429 (553)
.+|....- =.|...+|++.+|.+.+...+
T Consensus 189 s~aE~~Ly-l~iL~~~~k~~eal~~l~~~l 217 (932)
T KOG2053|consen 189 SEAEIILY-LLILELQGKYQEALEFLAITL 217 (932)
T ss_pred hHHHHHHH-HHHHHhcccHHHHHHHHHHHH
Confidence 33433332 356778899999999875543
No 266
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=84.67 E-value=9.5 Score=35.52 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=68.3
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC---------hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Q 008796 405 LTILGNLALALHDTVQAREILRSSLTLAKKLYD---------IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 475 (553)
Q Consensus 405 L~~LG~i~lalGd~~eA~~~l~~AL~LArklgD---------~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L 475 (553)
+.++|+.....+++-.|.-+|++||+++.++.. ...-+.+-.+|+..++..||++=++.+++.+.+.--.|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 568999999999999999999999999999842 11223445899999999999999999999988777666
Q ss_pred hhHHHHhhcchhhHHHHhhhcchh
Q 008796 476 QKRLADAYSSIHHIELISKVKLEV 499 (553)
Q Consensus 476 ~~~~~~A~~~~~h~~l~~~~~~~~ 499 (553)
... |-..--+. .|+-.+-+-
T Consensus 84 iPQ---Cp~~~C~a-fi~sLGCCk 103 (140)
T PF10952_consen 84 IPQ---CPNTECEA-FIDSLGCCK 103 (140)
T ss_pred ccC---CCCcchHH-HHHhhhccH
Confidence 543 33333333 455544443
No 267
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.04 E-value=4.8 Score=34.47 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Q 008796 415 LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 415 lGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~ 477 (553)
..+..+|...|++||. ++.++..--.++.-|..+|...|.+...+++.-.-..++.++.+
T Consensus 19 ~~~~~~Al~~W~~aL~---k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 19 QNETQQALQKWRKALE---KITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred cchHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4567789999999985 45556666778889999999999999999988888888887754
No 268
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.77 E-value=5.4 Score=41.70 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=79.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 008796 184 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 263 (553)
Q Consensus 184 ~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~ 263 (553)
..|+-|+.+-+.+|++..=+- ..|+...-+ .++++.|.+.+++.+.+|++|...+.
T Consensus 221 ~~MQ~GD~k~a~~yf~~vek~----~~kL~~~q~--------------------~~~V~~n~a~i~lg~nn~a~a~r~~~ 276 (366)
T KOG2796|consen 221 ISMQIGDIKTAEKYFQDVEKV----TQKLDGLQG--------------------KIMVLMNSAFLHLGQNNFAEAHRFFT 276 (366)
T ss_pred HHHhcccHHHHHHHHHHHHHH----Hhhhhccch--------------------hHHHHhhhhhheecccchHHHHHHHh
Confidence 456777777777777654433 455433322 67888999999999999999998887
Q ss_pred HHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Q 008796 264 QMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 328 (553)
Q Consensus 264 qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vy 328 (553)
..++. .|. -+.+-|+=.++.+++|+...|....++++.+.-.....-..+.||-..|
T Consensus 277 ~i~~~---D~~-----~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 277 EILRM---DPR-----NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hcccc---CCC-----chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 65543 333 1445667778888899999999999988877665555555666666655
No 269
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.75 E-value=10 Score=38.28 Aligned_cols=95 Identities=24% Similarity=0.232 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccc--hhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccch
Q 008796 284 EMLRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 357 (553)
Q Consensus 284 ~~lLG~~~~alG~yeeAl~~f~~AL~l~~d--~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~l 357 (553)
+-.-|--...-|.|++|..-|..||..... ...++.++.|-|.+.+.++..+. |..|++| .|.|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-~pty--------- 167 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-NPTY--------- 167 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-Cchh---------
Confidence 334455567789999999999999998866 34688999999999999988776 8888875 3432
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
. .++-.-+.+|-....|++|++-|.+-+++-
T Consensus 168 -~--kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 168 -E--KALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred -H--HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 1 244567888888899999999999887763
No 270
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=83.39 E-value=1.3e+02 Score=37.59 Aligned_cols=208 Identities=11% Similarity=-0.058 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCc-----hhhhhHHHHHHHHHHHHHH-------------------
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT-----ILQACESMIEMLRGQYAHS------------------- 293 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~d-----l~~~~~A~~~~lLG~~~~a------------------- 293 (553)
+-.+.-.+|..++..|++.+|+++|.+|+++++..+| ...-+.+.+..+++.....
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~ 320 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSS 320 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCc
Confidence 3445567888889999999999999999999999999 1112223333333332211
Q ss_pred -------------------------------------cCCHHHHHHHHHHHHHHccchh---hHHHHHHHHHHHHHHhC-
Q 008796 294 -------------------------------------VGCYSEAAFHYVEAAKITESKS---MQAMCHAYAAVSYFCIG- 332 (553)
Q Consensus 294 -------------------------------------lG~yeeAl~~f~~AL~l~~d~~---g~A~aL~NLA~vyl~~G- 332 (553)
-..+++|+.+|.++.....+.. -.+-+...++.+.....
T Consensus 321 ~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~ 400 (1185)
T PF08626_consen 321 SSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHL 400 (1185)
T ss_pred cCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhc
Confidence 1157788888887765555422 23344444444444433
Q ss_pred -------------------ChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 333 -------------------DAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 333 -------------------d~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
...+ +.+++.+--.. .+..+++..+..++.+|...|=..++-=++++++.
T Consensus 401 ~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~-------l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~ 473 (1185)
T PF08626_consen 401 SDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD-------LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV 473 (1185)
T ss_pred ccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh-------CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2122 44555442211 25566889999999999999999888888888888
Q ss_pred HHHHhccCh-HhHHHHHHHHHHHHHHCC----------------ChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 008796 390 IAHNHMGNL-QLVSQYLTILGNLALALH----------------DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALY 452 (553)
Q Consensus 390 Lar~elGdr-~leA~aL~~LG~i~lalG----------------d~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly 452 (553)
..-....+. ......|..+..+|--.. -+.--.+.++..+..+++++|......-...|=..|
T Consensus 474 ~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~~~ 553 (1185)
T PF08626_consen 474 QLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLRTY 553 (1185)
T ss_pred HhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 763222111 111123333444443311 222335677777778888888666555544444433
No 271
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.62 E-value=4.7 Score=41.48 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=68.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHH
Q 008796 290 YAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHF 365 (553)
Q Consensus 290 ~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~ 365 (553)
-+..-.+|+.|..+|.+|+.+.- ..+.=..|-|.+|+...+.+. +.+|+.+... .+-+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP---~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-------------~vk~h~ 82 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINP---TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-------------LVKAHY 82 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCC---CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-------------HHHHHH
Confidence 33445688999999998876532 233445677888888888776 8888887543 456789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 366 AYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 366 ~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
-+|...+....|++|...|.+|..+.+.
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999974
No 272
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.59 E-value=11 Score=40.63 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=66.2
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 356 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
..++.|.-+---|.-|+...+|..|...|+++|+- ..+|+-..|..+++=+-+.+..|+++.|++-+..|+.+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~---kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK---KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh---cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44557888888899999999999999999999987 48999999999999999999999999999999998876
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.00 E-value=12 Score=39.40 Aligned_cols=102 Identities=24% Similarity=0.226 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHH---------------
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRS--------------- 427 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~--------------- 427 (553)
.-+.-|.-....|++.+|...|..++.... +. +.+...|++.+...|+.+.|...+..
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~-~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a 208 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAP-EN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQA 208 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCc-cc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHH
Confidence 335566777889999999999999999984 34 34778899999999999888777543
Q ss_pred HHHHHHHhCChH-------------HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 428 SLTLAKKLYDIP-------------TQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 428 AL~LArklgD~~-------------~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.+++.....+.+ .-..+...|+..+...|+++.|.+++-..++.
T Consensus 209 ~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 209 QIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 244433332221 12234467899999999999999988766655
No 274
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.49 E-value=84 Score=35.77 Aligned_cols=227 Identities=13% Similarity=0.028 Sum_probs=122.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CHHHHHHH
Q 008796 187 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS-----GFVEAQEA 261 (553)
Q Consensus 187 ~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G-----r~aeAl~~ 261 (553)
...++++|+.|++.|....++.+.+ |...+ .. .+|.++.... ++..|...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~-~~~~a---------~~---------------~lg~~Y~~g~~~~~~d~~~A~~~ 315 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATK-GLPPA---------QY---------------GLGRLYLQGLGVEKIDYEKALKL 315 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhh-cCCcc---------cc---------------HHHHHHhcCCCCccccHHHHHHH
Confidence 4457778888888777742222222 22222 12 3344444432 55666666
Q ss_pred HHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH-H
Q 008796 262 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG---CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES-S 337 (553)
Q Consensus 262 l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG---~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~-~ 337 (553)
+.+|-++ +. +.+..++|..+..-. ++..|..+|..|.+ .|...+..++|.+|..-.-... .
T Consensus 316 ~~~aA~~----g~------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-----~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 316 YTKAAEL----GN------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-----AGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred HHHHHhc----CC------chHHHHHHHHHHcCCccccHHHHHHHHHHHHH-----cCChHHHHHHHHHHHhCCCcCCCH
Confidence 6665543 22 346778888877655 57899999998764 5778888999999977322222 6
Q ss_pred HHHHHhhcccccccccccchhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC
Q 008796 338 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ-QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 416 (553)
Q Consensus 338 ~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~q-Gr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG 416 (553)
..|...+...-. .+...+.+.+|..+..- ++++.+.-.+...-.+.. ...+..+-.+...+..+....
T Consensus 381 ~~A~~~~k~aA~--------~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~---~~~q~~a~~l~~~~~~~~~~~ 449 (552)
T KOG1550|consen 381 ELAFAYYKKAAE--------KGNPSAAYLLGAFYEYGVGRYDTALALYLYLAELGY---EVAQSNAAYLLDQSEEDLFSR 449 (552)
T ss_pred HHHHHHHHHHHH--------ccChhhHHHHHHHHHHccccccHHHHHHHHHHHhhh---hHHhhHHHHHHHhcccccccc
Confidence 677666665521 22334455555554444 788888777766544432 112222333333332222222
Q ss_pred ----ChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc----CCchHHHHHHHHHHHHH
Q 008796 417 ----DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL----GDRGNEMENDEYRRKKL 472 (553)
Q Consensus 417 ----d~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~al----Gd~~~A~e~~e~a~~~~ 472 (553)
+...+...+.++... |+ ..+...||+.|.-- -|+..|..+|.++...-
T Consensus 450 ~~~~~~~~~~~~~~~a~~~----g~----~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 450 GVISTLERAFSLYSRAAAQ----GN----ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred ccccchhHHHHHHHHHHhc----cC----HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 333344444443222 22 22455677776543 24677777776665444
No 275
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.36 E-value=1.3 Score=50.20 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCC---hHH-HHHHHHhhcccccccccccchh
Q 008796 283 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD---AES-SSQAIDLIGPVYQMKDTINGVR 358 (553)
Q Consensus 283 ~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd---~e~-~~qAL~L~r~lgd~~g~~~~lr 358 (553)
++|..|+|-..+|+...|.++...|+.. .+...-..++|||.+.+.-|- ... +.++|++.-.
T Consensus 609 ~ln~aglywr~~gn~~~a~~cl~~a~~~--~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------------ 674 (886)
T KOG4507|consen 609 ILNEAGLYWRAVGNSTFAIACLQRALNL--APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS------------ 674 (886)
T ss_pred EeecccceeeecCCcHHHHHHHHHHhcc--ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc------------
Confidence 5788899999999999999999988643 344455667888888777664 222 8899998622
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
+-..++++|..++.+.+.+.|+++|++|+++.
T Consensus 675 -epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 675 -EPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred -CchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 33578999999999999999999999999984
No 276
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=80.86 E-value=74 Score=32.98 Aligned_cols=174 Identities=17% Similarity=0.104 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhH
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 359 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~ 359 (553)
-+.-++.-|+-...-|++++|..+|+......--....-.++..++.++...|+++....+.+.+-..+-.+ .+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~------~n 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH------PN 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC------CC
Confidence 466778889999999999999999985544332233345788889999999999988666666655554222 23
Q ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhccCh--------------HhHHHHHHHHHHHHHHCCChHH
Q 008796 360 EASLHFAYGLLLMRQ-----QDFQEARNRLAKGLQIAHNHMGNL--------------QLVSQYLTILGNLALALHDTVQ 420 (553)
Q Consensus 360 eA~aL~~LG~~~~~q-----Gr~~EA~~~L~eAL~Lar~elGdr--------------~leA~aL~~LG~i~lalGd~~e 420 (553)
...+++..|+.++.+ .+...+++.+..-=++.. .--|- -..|.-=..+|..|+..|.+-.
T Consensus 107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~-ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ-RYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH-HCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 788999999988764 334444444443333332 12221 1233344568899999999999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHH
Q 008796 421 AREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 463 (553)
Q Consensus 421 A~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e 463 (553)
|...++..+.- -.+-...-.+|..|.++|.++|-.++|..
T Consensus 186 A~nR~~~v~e~---y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 186 AINRFEEVLEN---YPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHhc---cccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 98888877755 66777778899999999999998887764
No 277
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=80.49 E-value=2.7 Score=30.85 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
|.++..+|.+.+..++|++|..-|.+||+|-+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999964
No 278
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=94 Score=33.79 Aligned_cols=203 Identities=11% Similarity=0.035 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--hh-
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--KS- 315 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d--~~- 315 (553)
=+..-+++..+...|++.+=...+.+....+..++.. ...-.+..++-.....-+..+.-...+...++-+.. +.
T Consensus 48 E~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Ka--kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtF 125 (411)
T KOG1463|consen 48 EQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKA--KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTF 125 (411)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHH
Confidence 3445567777788888877777777776666666551 111112222222222223333444444444432211 00
Q ss_pred hHHHHHHHHHHHHHHhCChHH-HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 008796 316 MQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNH 394 (553)
Q Consensus 316 g~A~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~e 394 (553)
..-..-..+...|...++|.+ +..+-++.+++-+. + +......+..--..+|+...+..+|+..+.-|-+.++.-
T Consensus 126 LRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl-D---DK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 126 LRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL-D---DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-c---cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 111222345566666555544 33333333443111 1 111123444555677888889999999999999999766
Q ss_pred ccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 008796 395 MGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSV 447 (553)
Q Consensus 395 lGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~ 447 (553)
-.+++..|..=..=|-.|.+..|+..|..++-+|++=+..++|...-+.++..
T Consensus 202 YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKY 254 (411)
T KOG1463|consen 202 YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKY 254 (411)
T ss_pred ccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHH
Confidence 67788888766666777777789999999999999999999997555555543
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=79.66 E-value=1.4e+02 Score=35.46 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HhccChHhHHH-------HHHHHHHHHHHCC------
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH--------NHMGNLQLVSQ-------YLTILGNLALALH------ 416 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar--------~elGdr~leA~-------aL~~LG~i~lalG------ 416 (553)
.++..+++++|..+...-+.++|..+|..+-...+ +..|+....|. .|-.||+++.+.|
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV 872 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAV 872 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHH
Confidence 34678999999999998899999988876533221 01222111111 1234555555555
Q ss_pred -------ChHHHHH------HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 008796 417 -------DTVQARE------ILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 468 (553)
Q Consensus 417 -------d~~eA~~------~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a 468 (553)
++..|.. -|.+|+++|+...-+..|......-+ -..+-+++-+|.+.++.+
T Consensus 873 ~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aa-qll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 873 EAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAA-QLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH-HHHhhcchHHHHHHhhhc
Confidence 4444432 26677888877765554432222211 122446666666666555
No 280
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.52 E-value=2.7 Score=28.00 Aligned_cols=27 Identities=22% Similarity=0.118 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHH
Q 008796 404 YLTILGNLALALHDTVQAREILRSSLT 430 (553)
Q Consensus 404 aL~~LG~i~lalGd~~eA~~~l~~AL~ 430 (553)
++..+|.++...|++++|.+.+++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566777777777777777777766654
No 281
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.31 E-value=4 Score=32.08 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
+++-++..+.+.|+|++|+++....|++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 6788999999999999999999999998
No 282
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.96 E-value=14 Score=38.29 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=77.8
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 008796 185 GRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 264 (553)
Q Consensus 185 ~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~q 264 (553)
+...|+|++|...|+.|+..++... ++..++ .+-|+- ......-+|-|...|++..|+|-+++++-..
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~--lkEkP~--------e~eW~e--Ldk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQ--LKEKPG--------EPEWLE--LDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHH--hccCCC--------ChHHHH--HHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 4567889999999999999955432 233444 334421 1112455788999999999999999988775
Q ss_pred HHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 265 MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 310 (553)
Q Consensus 265 AL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l 310 (553)
.+ +..|+- --++...|-++....+.++|.+-|..+|++
T Consensus 256 iL---~~~~~n-----vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 256 IL---RHHPGN-----VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HH---hcCCch-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 54 556662 237788888999999999999999988865
No 283
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=78.02 E-value=40 Score=37.49 Aligned_cols=131 Identities=15% Similarity=0.044 Sum_probs=77.3
Q ss_pred ccCCCCCCccccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHH
Q 008796 157 VLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLM 236 (553)
Q Consensus 157 ~~~~~~~~~~WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~ 236 (553)
++++|++++ +|.=-=..-|-|=-+-....++.|.-|.-.+..||+.|.+- ..++.+... +++ -...+++
T Consensus 160 ~ls~~~~s~--~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg-~a~~k~~~~-~~~---di~~vaS---- 228 (569)
T PF15015_consen 160 PLSAPNFSF--LPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKG-AALSKPFKA-SAE---DISSVAS---- 228 (569)
T ss_pred CCCCCCccc--ChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh-hhccCCCCC-Chh---hHHHHHH----
Confidence 456665554 33222222233444455566788888888888899986653 333332210 111 1112222
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 237 LLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 309 (553)
Q Consensus 237 L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~ 309 (553)
-+-..|+.||+.+++++-|+.+..+++.+. |.-++.+ --...+-..+.+|.+|.+-+--|-=
T Consensus 229 ---fIetklv~CYL~~rkpdlALnh~hrsI~ln---P~~frnH-----LrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 229 ---FIETKLVTCYLRMRKPDLALNHSHRSINLN---PSYFRNH-----LRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred ---HHHHHHHHhhhhcCCCchHHHHHhhhhhcC---cchhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 236789999999999999999999998773 4422222 1223344557788888887775543
No 284
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.85 E-value=10 Score=40.76 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccccccccccc
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAK-ITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 355 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~-l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~ 355 (553)
|.-+---|--++.--+|-.|...|..+++ -..|+..-|.+..|-|-+.+..|+|.+ |.+||.+ .|.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-~P~-------- 151 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-KPT-------- 151 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-Ccc--------
Confidence 33344456667888899999999999998 457788999999999999999999987 6676653 333
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 356 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
-+-+++.-+.+++.+.++.+|...+.+.|.+-
T Consensus 152 ----h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 152 ----HLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ----hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34566778888888888888888888887664
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=76.57 E-value=1.9 Score=30.34 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHH
Q 008796 384 LAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 422 (553)
Q Consensus 384 L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~ 422 (553)
|++|+++- ..-+.++++||.++...|++++|+
T Consensus 2 y~kAie~~-------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677662 333568999999999999998886
No 286
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=76.09 E-value=1.6e+02 Score=34.62 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhH
Q 008796 283 IEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 359 (553)
Q Consensus 283 ~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~ 359 (553)
++.-+-.+....|+..+-..-|.+|++...- .+.-..+....|..|..-|+.+..+.-++-.-.+ ++..+.+
T Consensus 349 V~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-----~y~~v~d 423 (835)
T KOG2047|consen 349 VEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-----PYKTVED 423 (835)
T ss_pred HHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-----CccchHH
Confidence 4445556667788888889999999875533 3345567788888998888866522222221222 3456666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
.|.+|..-|..-++..+++.|+...++|..+=
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP 455 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVP 455 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence 79999999999999999999999999887653
No 287
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=75.47 E-value=1.4e+02 Score=33.24 Aligned_cols=142 Identities=16% Similarity=0.087 Sum_probs=88.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHc--cc-hh---hHHHHHHHHHHHHHHhCChHH---HHHHHHhhcccccccccccchhH
Q 008796 289 QYAHSVGCYSEAAFHYVEAAKIT--ES-KS---MQAMCHAYAAVSYFCIGDAES---SSQAIDLIGPVYQMKDTINGVRE 359 (553)
Q Consensus 289 ~~~~alG~yeeAl~~f~~AL~l~--~d-~~---g~A~aL~NLA~vyl~~Gd~e~---~~qAL~L~r~lgd~~g~~~~lr~ 359 (553)
+..+....|.+|...-..-+.-. .+ +. -.|.++..+..+|...|+... +-.++--...++ ++..+
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr------hd~e~ 207 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR------HDEEG 207 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc------Ccchh
Confidence 33344556666666655544321 11 11 255677788888888888554 223322222331 23344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
+|.-.+-+=-.|..-+-|+.|-..-.++.-= + ...| ...|..++-+|.|..-++++..|.+++-+|+..|-......
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~p-e-~~sn-ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alG 284 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSVYP-E-AASN-NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALG 284 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcccCc-c-cccc-HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhh
Confidence 6666666667777778888887776665422 1 2233 47788888999999999999999999888888776544333
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=75.28 E-value=3.1 Score=29.29 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEAR 381 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~ 381 (553)
+.+++++|.++...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 579999999999999999996
No 289
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.78 E-value=10 Score=37.37 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC----ChHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDF----------QEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH----DTVQAREILR 426 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~----------~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG----d~~eA~~~l~ 426 (553)
+..|++=|.+++.+.++ ++|..-|++||.|- ..-..++.+||.++..+| |..+|.++++
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-------P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~ 97 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-------PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFE 97 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 56667777766666544 34555555555552 444568888888887765 4445556666
Q ss_pred HHHHHHH
Q 008796 427 SSLTLAK 433 (553)
Q Consensus 427 ~AL~LAr 433 (553)
+|..-++
T Consensus 98 kA~~~Fq 104 (186)
T PF06552_consen 98 KATEYFQ 104 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.19 E-value=35 Score=32.97 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhCChHH---HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008796 317 QAMCHAYAAVSYFCIGDAES---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 387 (553)
Q Consensus 317 ~A~aL~NLA~vyl~~Gd~e~---~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eA 387 (553)
...++..+..+=+..++.+. +-.||..++|. -...-..-|.+|...|++.+|.+.|++.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------------~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE------------FPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34456666666677777665 66777777775 3455677899999999999999999995
No 291
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.52 E-value=1.4e+02 Score=31.92 Aligned_cols=226 Identities=12% Similarity=-0.010 Sum_probs=135.0
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--hhhHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--KSMQAMCHAYAAVS 327 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d--~~g~A~aL~NLA~v 327 (553)
....++.+|+..+.+.+.---.-.+......-.....+|..+.+.|+|..-......+-....+ ..-.+.....| +
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL--i 91 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL--I 91 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH--H
Confidence 4456677777777766654221222333333445567888889999887654444333222222 11111111111 1
Q ss_pred HHHhCChHH-------HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh
Q 008796 328 YFCIGDAES-------SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 400 (553)
Q Consensus 328 yl~~Gd~e~-------~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l 400 (553)
-.--+..+. +....+-..+..+. -+ +-.--.-+..+++..|.|.+|+....--+.-.+ ...|...
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~-----fL--r~~Le~Kli~l~y~~~~YsdalalIn~ll~ElK-k~DDK~~ 163 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRK-----FL--RLELECKLIYLLYKTGKYSDALALINPLLHELK-KYDDKIN 163 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hhcCccc
Confidence 111112221 22222111111000 00 111123456788999999999999999888875 5777777
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHHcCCchHHHHHHHHHHHHHHHHhhHH
Q 008796 401 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVL-TALYQQLGDRGNEMENDEYRRKKLDELQKRL 479 (553)
Q Consensus 401 eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~L-g~ly~alGd~~~A~e~~e~a~~~~d~L~~~~ 479 (553)
.-.+...=..+|+...+...+...+..|-++|..+.-++.-..-+..+ |-++..--|+.-|..+|-.+..-+..+..+.
T Consensus 164 Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~ 243 (421)
T COG5159 164 LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDV 243 (421)
T ss_pred eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchH
Confidence 777777788999999999999999999999999987766544444444 4456677889999999888887777666654
Q ss_pred HHhhcch
Q 008796 480 ADAYSSI 486 (553)
Q Consensus 480 ~~A~~~~ 486 (553)
.|.++.
T Consensus 244 -kAc~sL 249 (421)
T COG5159 244 -KACVSL 249 (421)
T ss_pred -HHHHHH
Confidence 444443
No 292
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.64 E-value=3.6 Score=46.93 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHH
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 442 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa 442 (553)
.++--|+.+.-+|+...|..++..|+-+.- +..+ -.+++|+.+.+.-|-.-.|...+.++|.+- ..+-
T Consensus 609 ~ln~aglywr~~gn~~~a~~cl~~a~~~~p-~~~~-----v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sep 676 (886)
T KOG4507|consen 609 ILNEAGLYWRAVGNSTFAIACLQRALNLAP-LQQD-----VPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEP 676 (886)
T ss_pred EeecccceeeecCCcHHHHHHHHHHhccCh-hhhc-----ccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCc
Confidence 445568888899999999999999998863 3333 357789999999998888999999999885 2333
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 443 WALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 443 ~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.....+|++|..+.+.+.|.++++.++++
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 46778999999999999999999998875
No 293
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.35 E-value=1.2e+02 Score=30.69 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhcc--ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC
Q 008796 378 QEARNRLAKGLQIAHNHMG--NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 436 (553)
Q Consensus 378 ~EA~~~L~eAL~Lar~elG--dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg 436 (553)
+.|...|++|+.++...+. ++...+-+||.=--.|--.|++.+|.++.++|++-|-.--
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Confidence 7899999999999975344 4666777787755566779999999999999998876543
No 294
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.79 E-value=1.2e+02 Score=30.56 Aligned_cols=80 Identities=18% Similarity=0.090 Sum_probs=65.5
Q ss_pred HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC
Q 008796 337 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 416 (553)
Q Consensus 337 ~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG 416 (553)
++.|.+.+... +..|-.......+|.-|+..|+|++|..+|+.++...+ ..|=......+|..|-..+...|
T Consensus 161 L~~A~~~f~~~-------~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr-~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 161 LEKAYEQFKKY-------GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYR-REGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHHHHHHh-------ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHhC
Confidence 45555555544 23445678888999999999999999999999999986 68888999999999999999999
Q ss_pred ChHHHHHH
Q 008796 417 DTVQAREI 424 (553)
Q Consensus 417 d~~eA~~~ 424 (553)
|.+.....
T Consensus 233 ~~~~~l~~ 240 (247)
T PF11817_consen 233 DVEDYLTT 240 (247)
T ss_pred CHHHHHHH
Confidence 98755443
No 295
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=70.31 E-value=1.3e+02 Score=31.77 Aligned_cols=119 Identities=15% Similarity=0.107 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhccC-----------hHhHHHHHHHHHHHHHHCC
Q 008796 358 REEASLHFAYGLLLMRQQD----------FQEARNRLAKGLQIAHNHMGN-----------LQLVSQYLTILGNLALALH 416 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr----------~~EA~~~L~eAL~Lar~elGd-----------r~leA~aL~~LG~i~lalG 416 (553)
.+++.++||+|.++..+|. ..+|..+|++|-.++. -+-+ .-+...++..|-.+.++++
T Consensus 108 fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~-~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqA 186 (345)
T cd09034 108 YELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFE-YLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQA 186 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH-HHHHhccccCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 4578899999988877654 4566677777766542 2221 1222334444444443332
Q ss_pred C---------------------hHHHHHHHHHHHHHHHHhCCh------------------HHHHHHHHHHHHHHHHcCC
Q 008796 417 D---------------------TVQAREILRSSLTLAKKLYDI------------------PTQIWALSVLTALYQQLGD 457 (553)
Q Consensus 417 d---------------------~~eA~~~l~~AL~LArklgD~------------------~~qa~aL~~Lg~ly~alGd 457 (553)
. ..++.++|++|....+..... .-++.+...+|..+...++
T Consensus 187 Qe~~~~ka~~~~~~~~~liakLa~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~ 266 (345)
T cd09034 187 QECFLLKAEEDKKAKLSLLARLACEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANK 266 (345)
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1 125678899999888765431 1356667777888888889
Q ss_pred chHHHHHHHHHHHHHHHHhh
Q 008796 458 RGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 458 ~~~A~e~~e~a~~~~d~L~~ 477 (553)
+++|..+++.+.........
T Consensus 267 ~G~aia~L~~A~~~~~~~~~ 286 (345)
T cd09034 267 IGEAIARLQAALELLKESER 286 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887776665
No 296
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.24 E-value=14 Score=28.00 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 008796 406 TILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 450 (553)
Q Consensus 406 ~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ 450 (553)
..|+.+|...||.+.|++.+++.+. -|+...+..+-..|..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~----~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE----EGDEAQRQEARALLAQ 43 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHhc
Confidence 4688999999999999999998883 5777777777766643
No 297
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=69.00 E-value=2e+02 Score=32.14 Aligned_cols=221 Identities=16% Similarity=0.117 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008796 172 AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 251 (553)
Q Consensus 172 ~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~ 251 (553)
.+-+-.|++.+.|.+-+-.|+++.+..+.-+.-+. .+.. +++..+-+-+...+..++-.
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~-----~~nr----------------RtlD~i~ak~~fy~~l~~E~ 181 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASIS-----IQNR----------------RTLDLIAAKLYFYLYLSYEL 181 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-----hcch----------------hhHHHHHHHHHHHHHHHHHh
Confidence 56677788888888888888887777766655521 1112 23333344444455545444
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHh
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~ 331 (553)
.|+...-...+..- ..-..+--+..++|+..|.|=..|+.-
T Consensus 182 ~~~l~~~rs~l~~~---------------------------------------lrtAtLrhd~e~qavLiN~LLr~yL~n 222 (493)
T KOG2581|consen 182 EGRLADIRSFLHAL---------------------------------------LRTATLRHDEEGQAVLINLLLRNYLHN 222 (493)
T ss_pred hcchHHHHHHHHHH---------------------------------------HHHhhhcCcchhHHHHHHHHHHHHhhh
Confidence 44421111111111 111112235567777777777777665
Q ss_pred CChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHH
Q 008796 332 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 411 (553)
Q Consensus 332 Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i 411 (553)
+-++ +|-.++-..--+. ..+-.+.|.-++-+|.+-.-+++|..|.+++.+|+..+- +.+-..-.-++--.+--+
T Consensus 223 ~lyd---qa~~lvsK~~~pe--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap-q~~alGf~q~v~k~~ivv 296 (493)
T KOG2581|consen 223 KLYD---QADKLVSKSVYPE--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP-QHAALGFRQQVNKLMIVV 296 (493)
T ss_pred HHHH---HHHHHhhcccCcc--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc-chhhhhHHHHHHHHHHHH
Confidence 5544 3444433321111 122245899999999999999999999999999999874 232222222233333344
Q ss_pred HHHCCChHHHH--------HHHHHH--HHHHHHhCChHHHHHHHHHHHHHHHHcCCc
Q 008796 412 ALALHDTVQAR--------EILRSS--LTLAKKLYDIPTQIWALSVLTALYQQLGDR 458 (553)
Q Consensus 412 ~lalGd~~eA~--------~~l~~A--L~LArklgD~~~qa~aL~~Lg~ly~alGd~ 458 (553)
.+-+|+..+=. ..+..= |+-|-++||.----.++...++...+.|-+
T Consensus 297 ~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty 353 (493)
T KOG2581|consen 297 ELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTY 353 (493)
T ss_pred HHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcc
Confidence 45556543211 111111 222344556555445555555555555433
No 298
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.92 E-value=28 Score=33.40 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhCChHH---HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAES---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~---~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
..++..+..+-+..++++. +-.||..++|. -...-..-|.+|...|++.||.+.|++...
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~------------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPN------------LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3455566666666777776 66777777775 223445679999999999999999987643
No 299
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=68.37 E-value=9.8 Score=43.39 Aligned_cols=146 Identities=14% Similarity=0.052 Sum_probs=82.9
Q ss_pred cccccccccccccccccccccCCCCCCccccchhhHHHHHHHHHHHHH-hcCCCHH------------------------
Q 008796 138 EFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILG-RPKGLFK------------------------ 192 (553)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WLp~~~~~~Lv~l~tv~~~-~~~G~~d------------------------ 192 (553)
-.+..+||||--|||.--+..| ...=+|.+++.+||+++..+-| +..|.|+
T Consensus 69 ~~vkRVYFGNWLRDYSQavDvg----tlk~v~~~~ir~lv~vLgFm~FGYaT~EFEVT~eRLG~YrPeEHIDNPkgYad~ 144 (606)
T PF07217_consen 69 LDVKRVYFGNWLRDYSQAVDVG----TLKKVSAETIRILVWVLGFMTFGYATGEFEVTAERLGVYRPEEHIDNPKGYADN 144 (606)
T ss_pred cccceeeechhHHHHhHhhhhh----hhccCCHHHHHHHHHHHHHhhhccccCceEecHHHccccCcHhhCcCCCCCCCC
Confidence 4456799999999998776655 3356999999999999987766 3333332
Q ss_pred -HHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 008796 193 -ECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIR 271 (553)
Q Consensus 193 -ka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~ 271 (553)
+|++|..+---=|+. ++|.+.+. .++ .+ ++.-..|..+.+..+.+..+.-|-+
T Consensus 145 ~Dar~yd~rLRgPVdp--~EL~IDp~---TGM---Kn------------------YIAnE~~gw~TSa~~vr~~l~rcI~ 198 (606)
T PF07217_consen 145 EDARQYDPRLRGPVDP--RELEIDPR---TGM---KN------------------YIANERGGWDTSAGYVRRSLGRCIH 198 (606)
T ss_pred CChhhccccccCCCCh--HhhccCcc---chh---HH------------------HHhcccCChhhHHHHHHHHHHHHHH
Confidence 333333222222221 22222211 010 11 1123345555555555554444444
Q ss_pred CCchhh-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Q 008796 272 FPTILQ-------ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 272 ~~dl~~-------~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d 313 (553)
+|.... ....-+++.||...+-+.+|..--.+.+-||...+.
T Consensus 199 ~GR~y~~g~~g~~~dl~EAlR~LG~aLHtLEDf~AHSNy~ELaL~elG~ 247 (606)
T PF07217_consen 199 LGRRYTSGRSGNEEDLYEALRLLGQALHTLEDFSAHSNYCELALIELGE 247 (606)
T ss_pred HhhhhcccccCCchhHHHHHHHHHhhHhHHhhhhhhhhHHHHHHHHhcc
Confidence 333111 223457788888888888888888888877765554
No 300
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.04 E-value=12 Score=38.40 Aligned_cols=148 Identities=20% Similarity=0.153 Sum_probs=100.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 008796 371 LMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTA 450 (553)
Q Consensus 371 ~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ 450 (553)
....|+.+.|.+.|.+||.++- + -+....++|+.....|+...|..-|++.|++- -.|+.+-+.-+..||+
T Consensus 5 ~~~~~D~~aaaely~qal~lap-~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld--p~D~~gaa~kLa~lg~ 75 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAP-E------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD--PEDHGGAALKLAVLGR 75 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCc-h------hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC--cccccchhhhHHhhcC
Confidence 3456899999999999999973 2 23467899999999999999999999999872 2345555554555543
Q ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhhHHHHhhcchhhHHHHhhhcchhhccchhhHHHhhhcccccccccCCcccCCCC
Q 008796 451 LYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISKVKLEVQQFHELDIKRAMANQSMSVNLDIPESIGLST 530 (553)
Q Consensus 451 ly~alGd~~~A~e~~e~a~~~~d~L~~~~~~A~~~~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (553)
.-. +.++=+.| -+.|+..+++. -+|+ |+++..-+|.++-.--|-.+.-++ ..--||+----||..
T Consensus 76 ~e~----p~~pP~aY------Ve~LFD~~Ae~---Fd~~-LVdkL~Y~vP~~l~emI~~~~~g~-F~~~lDLGCGTGL~G 140 (287)
T COG4976 76 GET----PEKPPSAY------VETLFDQYAER---FDHI-LVDKLGYSVPELLAEMIGKADLGP-FRRMLDLGCGTGLTG 140 (287)
T ss_pred CCC----CCCCchHH------HHHHHHHHHHH---HHHH-HHHHhcCccHHHHHHHHHhccCCc-cceeeecccCcCccc
Confidence 221 12222222 23344444443 3577 899999998776555565555555 777899999999988
Q ss_pred CCCCcccccccc
Q 008796 531 PLPVQSSSRLID 542 (553)
Q Consensus 531 ~~~~~~~~~~~~ 542 (553)
+.--+-..||-.
T Consensus 141 ~~lR~~a~~ltG 152 (287)
T COG4976 141 EALRDMADRLTG 152 (287)
T ss_pred HhHHHHHhhccC
Confidence 876655666643
No 301
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=67.94 E-value=57 Score=33.61 Aligned_cols=123 Identities=12% Similarity=0.036 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-hC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT-RS 253 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~-~G 253 (553)
.|||+.-.-+.+..+-.+.|++.+.+|+.. .+. ++ .|| ...|..... .+
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~----------~~~-------~~-----~vy--------~~~A~~E~~~~~ 50 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKD----------KRC-------TY-----HVY--------VAYALMEYYCNK 50 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCS--------T-----HHH--------HHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcC----------CCC-------CH-----HHH--------HHHHHHHHHhCC
Confidence 367888788888888888888888887632 111 12 233 123444555 46
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh-hHHHHHHHHHHHHHHhC
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-MQAMCHAYAAVSYFCIG 332 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~-g~A~aL~NLA~vyl~~G 332 (553)
+...|.+.|+.++..|-..++... .-+ .+....|+.+.|...|++|+....... ........+ ..-...|
T Consensus 51 d~~~A~~Ife~glk~f~~~~~~~~-------~Y~-~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i-~fE~~~G 121 (280)
T PF05843_consen 51 DPKRARKIFERGLKKFPSDPDFWL-------EYL-DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFI-EFESKYG 121 (280)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHH-------HHH-HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHH-HHHHHHS
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHH-------HHH-HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHcC
Confidence 666699999999988776665211 112 455678999999999999987655544 222222222 2223346
Q ss_pred ChHH
Q 008796 333 DAES 336 (553)
Q Consensus 333 d~e~ 336 (553)
+.+.
T Consensus 122 dl~~ 125 (280)
T PF05843_consen 122 DLES 125 (280)
T ss_dssp -HHH
T ss_pred CHHH
Confidence 6554
No 302
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=66.68 E-value=2e+02 Score=31.39 Aligned_cols=113 Identities=17% Similarity=0.095 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHH
Q 008796 366 AYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWAL 445 (553)
Q Consensus 366 ~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL 445 (553)
.+..+|+..++|.+|+.....-++-.+ ..-|.-....+...=..+|.+..+...|...+..|-+.|..+.-++...-++
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElK-KlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELK-KLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH-hcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 466788999999999999999998886 5888888888888889999999999999999999999999998877666566
Q ss_pred HHH-HHHHHHcCCchHHHHHHHHHHHHHHHHhhHH
Q 008796 446 SVL-TALYQQLGDRGNEMENDEYRRKKLDELQKRL 479 (553)
Q Consensus 446 ~~L-g~ly~alGd~~~A~e~~e~a~~~~d~L~~~~ 479 (553)
... |-+|.+-.|+.-|..+|=.+-.-+++++.+.
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 555 4467777899999999999988888888773
No 303
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.50 E-value=1.9e+02 Score=31.15 Aligned_cols=150 Identities=16% Similarity=0.069 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHC-Cchh----------------hhhHH----HHHHHHHHH
Q 008796 232 GVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRF-PTIL----------------QACES----MIEMLRGQY 290 (553)
Q Consensus 232 ~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~-~dl~----------------~~~~A----~~~~lLG~~ 290 (553)
.+| ++-.|-.++.+...+|+++.|.+.+++|+=.+++. ...+ ...+. .+...-...
T Consensus 36 ~Py---HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 36 NPY---HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 456 78889999999999999999999999999988851 1001 01111 123333445
Q ss_pred HHHcCCHHHHHHHHHHHHHHc--cchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHH
Q 008796 291 AHSVGCYSEAAFHYVEAAKIT--ESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYG 368 (553)
Q Consensus 291 ~~alG~yeeAl~~f~~AL~l~--~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG 368 (553)
....||+..|++.++-=+.+- +|+.|.-......| ++.++++-+ ++++......... .....-=+--+..+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A---Lrs~~y~~L---i~~~~~~~~~~~~-~~~~~lPn~a~S~a 185 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA---LRSRQYQWL---IDFSESPLAKCYR-NWLSLLPNFAFSIA 185 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH---HhcCCHHHH---HHHHHhHhhhhhh-hhhhhCccHHHHHH
Confidence 566899999999998655433 45555544444333 444666541 1111111000000 00000013557788
Q ss_pred HHHHHcCCH---------------HHHHHHHHHHHHHH
Q 008796 369 LLLMRQQDF---------------QEARNRLAKGLQIA 391 (553)
Q Consensus 369 ~~~~~qGr~---------------~EA~~~L~eAL~La 391 (553)
++++..++- ++|...+.+|+...
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 888888888 89999999999886
No 304
>PRK10941 hypothetical protein; Provisional
Probab=65.31 E-value=49 Score=34.36 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d 313 (553)
-..+|.||-.+++..+++..|++..+..+.+. |+ .+.-.+-.|..+..+||+..|..-++.-++..-+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~---P~-----dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFD---PE-----DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 57789999999999999999999999999884 54 2335677999999999999999988876666544
No 305
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=64.71 E-value=2.4e+02 Score=31.51 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=110.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHH
Q 008796 245 KVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 324 (553)
Q Consensus 245 Lg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NL 324 (553)
-|.+.--.|+-..|.+--.++-.+... ..++.+|-+-.+.....|+|++|..-|+ ...+++...-..|..|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llss------DqepLIhlLeAQaal~eG~~~~Ar~kfe---AMl~dPEtRllGLRgL 160 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSS------DQEPLIHLLEAQAALLEGDYEDARKKFE---AMLDDPETRLLGLRGL 160 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhc------cchHHHHHHHHHHHHhcCchHHHHHHHH---HHhcChHHHHHhHHHH
Confidence 344555677778888777777766543 3367788999999999999999999998 3568888888888888
Q ss_pred HHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HhccCh
Q 008796 325 AVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH--NHMGNL 398 (553)
Q Consensus 325 A~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar--~elGdr 398 (553)
=+--.+.|+++. .++|-+....+ . -+....=......|+.+.|+..+.....-.- +..-+
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l--------~-----WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae- 226 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQL--------P-----WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE- 226 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCC--------c-----hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH-
Confidence 777888898876 44444443332 1 1122222356688999999999987765531 11122
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 433 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LAr 433 (553)
+.-|- |..---..+..-|+..|++...+|+.+..
T Consensus 227 R~rAv-LLtAkA~s~ldadp~~Ar~~A~~a~KL~p 260 (531)
T COG3898 227 RSRAV-LLTAKAMSLLDADPASARDDALEANKLAP 260 (531)
T ss_pred HHHHH-HHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 22232 33333334455578999999888887743
No 306
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=63.23 E-value=16 Score=31.18 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=31.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 008796 187 PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMK 266 (553)
Q Consensus 187 ~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL 266 (553)
.+++|++|..++++||.+ ++ .|..++|+.+|++++
T Consensus 1 ik~~~~~A~~~I~kaL~~-----dE----------------------------------------~g~~e~Al~~Y~~gi 35 (79)
T cd02679 1 IRGYYKQAFEEISKALRA-----DE----------------------------------------WGDKEQALAHYRKGL 35 (79)
T ss_pred CchHHHHHHHHHHHHhhh-----hh----------------------------------------cCCHHHHHHHHHHHH
Confidence 368899999999999998 32 146678888888888
Q ss_pred HHHHH
Q 008796 267 NWFIR 271 (553)
Q Consensus 267 ~L~r~ 271 (553)
+...+
T Consensus 36 ~~l~e 40 (79)
T cd02679 36 RELEE 40 (79)
T ss_pred HHHHH
Confidence 88776
No 307
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.72 E-value=2.3e+02 Score=30.74 Aligned_cols=138 Identities=13% Similarity=-0.000 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
.-...+.-.+..++|..|.+.+...+.- .|.... .........|..++-.-+|.+|...++..+........+...
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~ 208 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREG 208 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 3455666668899999999999997753 555222 233344447888888999999999999766542220111111
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhhccccccccccc-c-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 321 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTIN-G-VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~-~-lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
+..+..+ -+++.-+........... . .......++..+.=...+|+|+.|...+=+++++.-
T Consensus 209 l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~ 272 (379)
T PF09670_consen 209 LKELVEV----------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA 272 (379)
T ss_pred HHHHHHH----------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 1111111 111211111101000000 0 111344455555556679999999999999999973
No 308
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.26 E-value=35 Score=37.95 Aligned_cols=95 Identities=15% Similarity=-0.017 Sum_probs=63.6
Q ss_pred HHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHH
Q 008796 262 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAI 341 (553)
Q Consensus 262 l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL 341 (553)
+..|++++++.++ ......||..+...|+++-|+..|. .++| ...|..+|...|+.+.+..-.
T Consensus 334 L~~A~~~a~~~~~------~~~W~~Lg~~AL~~g~~~lAe~c~~----k~~d-------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 334 LDIALEIAKELDD------PEKWKQLGDEALRQGNIELAEECYQ----KAKD-------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHHHHHCCCCST------HHHHHHHHHHHHHTTBHHHHHHHHH----HCT--------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHhcCc------HHHHHHHHHHHHHcCCHHHHHHHHH----hhcC-------ccccHHHHHHhCCHHHHHHHH
Confidence 4455566666555 3488899999999999999999999 3343 345778899999988777766
Q ss_pred HhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008796 342 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 387 (553)
Q Consensus 342 ~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eA 387 (553)
++....++. +..=.+++..|+.++..+.|.++
T Consensus 397 ~~a~~~~~~--------------n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 397 KIAEERGDI--------------NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHTT-H--------------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHccCH--------------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 665554211 22223456668888887777665
No 309
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=61.38 E-value=39 Score=31.62 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccchh------------hHHHHHHHHHHHHHHhCChHH
Q 008796 284 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKS------------MQAMCHAYAAVSYFCIGDAES 336 (553)
Q Consensus 284 ~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~------------g~A~aL~NLA~vyl~~Gd~e~ 336 (553)
|+++|..+...+.+-.|.-||++|+.+..+.. .......|||..|...||.+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~y 68 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDY 68 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHH
Confidence 68899999999999999999999999775531 244567899999999999774
No 310
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.63 E-value=1.3e+02 Score=33.76 Aligned_cols=133 Identities=18% Similarity=0.107 Sum_probs=73.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHc--------cchhhHHHHHHHHHHHHHHhCChHH---HHHHHHhhcc------------
Q 008796 290 YAHSVGCYSEAAFHYVEAAKIT--------ESKSMQAMCHAYAAVSYFCIGDAES---SSQAIDLIGP------------ 346 (553)
Q Consensus 290 ~~~alG~yeeAl~~f~~AL~l~--------~d~~g~A~aL~NLA~vyl~~Gd~e~---~~qAL~L~r~------------ 346 (553)
..+....|++|+.....|=+.+ ......|.....+-|+|.+.-+-.+ .+.=|++.+.
T Consensus 172 a~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGenl~R 251 (568)
T KOG2561|consen 172 AAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGENLSR 251 (568)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhhhhhHh
Confidence 3344445555555554443322 2233456666667778888777544 2222222221
Q ss_pred cccccccccchhHHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHH--------HHHHC
Q 008796 347 VYQMKDTINGVREEASLH---FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGN--------LALAL 415 (553)
Q Consensus 347 lgd~~g~~~~lr~eA~aL---~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~--------i~lal 415 (553)
++.-.|... .++|..+ ..-|.+.+++|+-++|.++|..|-+... +.--...+-..+..+|. ...-.
T Consensus 252 l~~lKg~~s--pEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~-elki~d~~lsllv~mGfeesdaRlaLRsc~ 328 (568)
T KOG2561|consen 252 LRSLKGGQS--PERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLL-ELKINDETLSLLVGMGFEESDARLALRSCN 328 (568)
T ss_pred hhhccCCCC--hhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HeeccchHHHHHHHcCCCchHHHHHHHhcc
Confidence 111111112 2244333 3349999999999999999999988875 44444444455566652 23345
Q ss_pred CChHHHHHHH
Q 008796 416 HDTVQAREIL 425 (553)
Q Consensus 416 Gd~~eA~~~l 425 (553)
|+.+.|..+.
T Consensus 329 g~Vd~AvqfI 338 (568)
T KOG2561|consen 329 GDVDSAVQFI 338 (568)
T ss_pred ccHHHHHHHH
Confidence 6666666553
No 311
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.79 E-value=36 Score=35.29 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHH
Q 008796 365 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 442 (553)
Q Consensus 365 ~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa 442 (553)
.+-+.+|+...+++.+..-.++|+.+. .-.+..+..||...+....+.+|+.++.+|..+.+...-..+.-
T Consensus 48 tnralchlk~~~~~~v~~dcrralql~-------~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~d 118 (284)
T KOG4642|consen 48 TNRALCHLKLKHWEPVEEDCRRALQLD-------PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDD 118 (284)
T ss_pred hhHHHHHHHhhhhhhhhhhHHHHHhcC-------hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcch
Confidence 345677777777777777777777774 22455677777777777777788888888877777777665433
No 312
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=58.57 E-value=2.6e+02 Score=29.95 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhcccCCCccccccccccccccccccccccccCCCCCCcccc
Q 008796 89 QQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWL 168 (553)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL 168 (553)
++--++|+.|.+..-.+..++.-+..|-.-|.||. .|.. ---.+..+.+ ..-.|.|-+. ++.+....=+
T Consensus 34 ~~~l~~l~~lR~~~~~~~~~~~~~~~l~~Yy~qL~-~l~~---rfp~~~~~~~------v~F~W~d~~~-~~~~~~~~sl 102 (348)
T cd09242 34 EEEIAEFDRLRQDANGVLADETGRDLLYKYYGQLE-LLEL---RFPFNNKELK------VDFTWYDAFY-KSKKVKQHSL 102 (348)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH-HHHh---hcCCCCcccc------ceeeeeecCC-CCCceeecch
Confidence 34445666677777666667777888888888875 3433 0000011111 2225666555 2222222222
Q ss_pred chhhHHHHHHHHHHH---H-Hhc---CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhh
Q 008796 169 PKSAVYALVDLMVVI---L-GRP---KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS 226 (553)
Q Consensus 169 p~~~~~~Lv~l~tv~---~-~~~---~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~ 226 (553)
.=|-.+||..+-... - ... ...+++|..++++|--..+-+.+..... ..+|+++.
T Consensus 103 ~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l~e~~~~~---ps~Dl~~~ 164 (348)
T cd09242 103 AFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYINENFLHA---PSVDLQQE 164 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCccCCHH
Confidence 224444443222221 1 111 2357788888888777654443332222 23566444
No 313
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=58.53 E-value=3.1e+02 Score=30.80 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHH------HCCChHHHHHHHHHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL------ALHDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~l------alGd~~eA~~~l~~AL~LArk 434 (553)
|.+-.+++..+.-.|-+..|...+..|..+.. ..|--..-|.+...-+..+. +.-+.+.+.+.+++|-....+
T Consensus 353 a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il-~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~k 431 (482)
T KOG4322|consen 353 ANENLDLALEHLALGSPKAALPLLHTAVHLIL-VQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFYK 431 (482)
T ss_pred hhchHHHHHHHHHcCChHHHHHHHHhhhhHHH-hccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHHH
Confidence 45555555555555555555555555555543 12221211111111110000 222444555667777777777
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCchH
Q 008796 435 LYDIPTQIWALSVLTALYQQLGDRGN 460 (553)
Q Consensus 435 lgD~~~qa~aL~~Lg~ly~alGd~~~ 460 (553)
++-..-...+...++..|...||.++
T Consensus 432 L~~he~ildv~yf~A~~yn~lGd~~e 457 (482)
T KOG4322|consen 432 LGCHEKILDVTYFSAYQYNHLGDSPE 457 (482)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCchH
Confidence 77777777777777777777777653
No 314
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=58.32 E-value=3.9e+02 Score=31.96 Aligned_cols=158 Identities=13% Similarity=0.045 Sum_probs=89.7
Q ss_pred hCCHHHHHHHHH------HHHHHHHHCCchh--------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 008796 252 RSGFVEAQEALV------QMKNWFIRFPTIL--------------QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 311 (553)
Q Consensus 252 ~Gr~aeAl~~l~------qAL~L~r~~~dl~--------------~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~ 311 (553)
-|+|.||.+.|- -|+++....+|.+ -.+.-.+.+++|.+...+...++|..+|. -.
T Consensus 747 ~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~----~~ 822 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS----YC 822 (1189)
T ss_pred hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc
Confidence 477777777663 3455555555511 23456788999999999999999999998 55
Q ss_pred cchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHH------HHHHHcCCHHHHHH---
Q 008796 312 ESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYG------LLLMRQQDFQEARN--- 382 (553)
Q Consensus 312 ~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG------~~~~~qGr~~EA~~--- 382 (553)
++..+.+-|+.. ...+++++.. .+.+ +.++.-+...|..+-..| .+|++.+.+..|..
T Consensus 823 ~~~e~~~ecly~-------le~f~~LE~l---a~~L---pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv 889 (1189)
T KOG2041|consen 823 GDTENQIECLYR-------LELFGELEVL---ARTL---PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCV 889 (1189)
T ss_pred cchHhHHHHHHH-------HHhhhhHHHH---HHhc---CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHH
Confidence 666666665543 2233332221 1111 000111112344444443 35677777777754
Q ss_pred ---HHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 008796 383 ---RLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSS 428 (553)
Q Consensus 383 ---~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~A 428 (553)
...+|++++.+ ..-++.. ..+-.-+.-.++.+++-+|+++.+.|
T Consensus 890 ~LnQW~~avelaq~-~~l~qv~-tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR-FQLPQVQ-TLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHHh-ccchhHH-HHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 34677888753 3332221 12222334466778888888888877
No 315
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.17 E-value=1.5e+02 Score=32.27 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=59.9
Q ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccc----ccc----------c---------c-ccc
Q 008796 301 AFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVY----QMK----------D---------T-ING 356 (553)
Q Consensus 301 l~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lg----d~~----------g---------~-~~~ 356 (553)
...|+++.....+......-..+-|.++...|++.+..+.|+.....+ |+. | . -+.
T Consensus 41 ~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~ 120 (449)
T COG3014 41 KKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGN 120 (449)
T ss_pred hhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCch
Confidence 456777777777766666667778888888888876222222211110 000 0 0 145
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 357 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
..+..-...-+|+-|++.++++.|+-.+++|+..-
T Consensus 121 ~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 121 IYEGVLINYYKALNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred hHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHH
Confidence 55566777788999999999999999998888764
No 316
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.81 E-value=26 Score=33.20 Aligned_cols=70 Identities=9% Similarity=0.072 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 317 QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 317 ~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
...+..|+|++.....+.+...+.+.++.+++... ..-++=.+++-++..|.+.++|++|++++...|+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~----~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA----HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc----CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34567788888877666666778888877776411 11224568888999999999999999999988877
No 317
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=57.42 E-value=1.9e+02 Score=31.51 Aligned_cols=110 Identities=15% Similarity=0.243 Sum_probs=76.8
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHH
Q 008796 166 EWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENK 245 (553)
Q Consensus 166 ~WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenL 245 (553)
+|=++=.-..+|++.. ++++.-++.+++.++.++-.+- +.+...+++ -..++-.+
T Consensus 67 efe~kINplslvei~l-~~~~~~~D~~~al~~Le~i~~~----~~~~~e~~a--------------------v~~~~t~~ 121 (380)
T KOG2908|consen 67 EFETKINPLSLVEILL-VVSEQISDKDEALEFLEKIIEK----LKEYKEPDA--------------------VIYILTEI 121 (380)
T ss_pred HHhhccChHHHHHHHH-HHHHHhccHHHHHHHHHHHHHH----HHhhccchh--------------------HHHHHHHH
Confidence 5555555666776554 4556666889998888887777 444444444 23355667
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008796 246 VAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEA 300 (553)
Q Consensus 246 g~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeA 300 (553)
+.+++..|+..++.+.+...-......+.....--+.-+..-..|+...|+|+..
T Consensus 122 ~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 122 ARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHH
Confidence 7888899999999999999999988877754433344555666777777777654
No 318
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.74 E-value=2.8e+02 Score=29.52 Aligned_cols=141 Identities=13% Similarity=-0.017 Sum_probs=82.5
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHH-HHH
Q 008796 248 VELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY-AAV 326 (553)
Q Consensus 248 ~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~N-LA~ 326 (553)
-....|++.+|...+.+++....+.++ +.-.++..+...|+.++|...+..-=. ......+..+.. +..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~--------~~~~la~~~l~~g~~e~A~~iL~~lP~--~~~~~~~~~l~a~i~l 212 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSE--------AKLLLAECLLAAGDVEAAQAILAALPL--QAQDKAAHGLQAQIEL 212 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccch--------HHHHHHHHHHHcCChHHHHHHHHhCcc--cchhhHHHHHHHHHHH
Confidence 346679999999999999988777655 444567777888999988888763111 111112222111 111
Q ss_pred HH--HHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHH
Q 008796 327 SY--FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQY 404 (553)
Q Consensus 327 vy--l~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~a 404 (553)
.- ...++...+.+.++. .| .+ ..+-+.++.++...|++++|.++|-.-|+.- .|...++ +
T Consensus 213 l~qaa~~~~~~~l~~~~aa-dP--------dd----~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d---~~~~d~~--~ 274 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAA-DP--------DD----VEAALALADQLHLVGRNEAALEHLLALLRRD---RGFEDGE--A 274 (304)
T ss_pred HHHHhcCCCHHHHHHHHHh-CC--------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---ccccCcH--H
Confidence 11 122222334443331 11 12 2455789999999999999999997766663 3333332 2
Q ss_pred HHHHHHHHHHCC
Q 008796 405 LTILGNLALALH 416 (553)
Q Consensus 405 L~~LG~i~lalG 416 (553)
-..|=+++...|
T Consensus 275 Rk~lle~f~~~g 286 (304)
T COG3118 275 RKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhcC
Confidence 344555555555
No 319
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=55.71 E-value=3.1e+02 Score=30.02 Aligned_cols=202 Identities=10% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH---CCchhhhhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHccchhhHHHHHHHHHH--HH
Q 008796 257 EAQEALVQMKNWFIR---FPTILQACESMIEMLRGQYAHS---VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAV--SY 328 (553)
Q Consensus 257 eAl~~l~qAL~L~r~---~~dl~~~~~A~~~~lLG~~~~a---lG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~--vy 328 (553)
..++.+..++++.+. .|+.-......+....+.+.-. .|+.++|+..+..++...+.....+.|+..-.. .+
T Consensus 152 RdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~ 231 (374)
T PF13281_consen 152 RDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLF 231 (374)
T ss_pred hhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Q ss_pred HHhCChHH--HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHhccChHhH
Q 008796 329 FCIGDAES--SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL-----QIAHNHMGNLQLV 401 (553)
Q Consensus 329 l~~Gd~e~--~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL-----~Lar~elGdr~le 401 (553)
...+..+. +.+|.+.++.. -....-.+.=.|++.+....|...+....+++.. -+.++..-+..--
T Consensus 232 ~~s~~~d~~~ldkAi~~Y~kg-------Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 232 LESNFTDRESLDKAIEWYRKG-------FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHcCccchHHHHHHHHHHHHH-------HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 402 SQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 402 A~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
==..-.+.++..-.||+..|...+++++.+....--...-...+..+...-...+++....+.+
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li~~~~~~~~~~~~~~~~~ 368 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENIKLIRHFRKRPEEPSPKQQLF 368 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHhcCCCCCCchhhhc
No 320
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=55.53 E-value=2.3e+02 Score=33.53 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=109.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHHH-----HHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHcc
Q 008796 244 NKVAVELTRSGFVEAQEALVQM-----KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVE------AAKITE 312 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qA-----L~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~------AL~l~~ 312 (553)
.|+.-.+..=+|+-|.+.|.+. +++.-+..+.-..++.-=.-++.....+.|.|.||...|.+ |++++.
T Consensus 590 ~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT 669 (1081)
T KOG1538|consen 590 ELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT 669 (1081)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH
Confidence 3444444445566666666543 22322222221222211234567778889999999999984 333333
Q ss_pred chhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHH----
Q 008796 313 SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRL---- 384 (553)
Q Consensus 313 d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L---- 384 (553)
|.. ....+.-|+..|+.++ .+.--+-.+.+. .. +|+ +......|+.++|....
T Consensus 670 DlR-----MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k-------eP--kaA-----AEmLiSaGe~~KAi~i~~d~g 730 (1081)
T KOG1538|consen 670 DLR-----MFDYAQEFLGSGDPKEKKMLIRKRADWARNIK-------EP--KAA-----AEMLISAGEHVKAIEICGDHG 730 (1081)
T ss_pred HHH-----HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC-------Cc--HHH-----HHHhhcccchhhhhhhhhccc
Confidence 322 2344556666777665 222222223331 11 222 34456679999998865
Q ss_pred --HHHHHHHHHhccChH-----hHHHHHH------HHHHHHHHCCChHHHHHH------HHHHHHHHHHhCChHHHHHHH
Q 008796 385 --AKGLQIAHNHMGNLQ-----LVSQYLT------ILGNLALALHDTVQAREI------LRSSLTLAKKLYDIPTQIWAL 445 (553)
Q Consensus 385 --~eAL~Lar~elGdr~-----leA~aL~------~LG~i~lalGd~~eA~~~------l~~AL~LArklgD~~~qa~aL 445 (553)
.-+.+|+|+ +.-.. ..|..+. .-++|+...||..+-.++ |..|+++|.+.+.-.. .++
T Consensus 731 W~d~lidI~rk-ld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~~--dVy 807 (1081)
T KOG1538|consen 731 WVDMLIDIARK-LDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFKD--DVY 807 (1081)
T ss_pred HHHHHHHHHhh-cchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccccc--ccc
Confidence 456677653 22111 1122222 236788888887776554 7788888888764322 233
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 446 SVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 446 ~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
.-.|+-.....+.++|...|..+.+
T Consensus 808 ~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 808 MPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred chHHHHhhhhhhHHHHHHHHHHhcc
Confidence 3445555555666666666644443
No 321
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.35 E-value=3.7e+02 Score=30.83 Aligned_cols=178 Identities=15% Similarity=0.025 Sum_probs=106.4
Q ss_pred HHHHHH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 008796 233 VYLMLL-MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 311 (553)
Q Consensus 233 vy~~L~-a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~ 311 (553)
.|-.+. ..+|++--.+....|+-+.|..+++..-++.+..|.-. .-+..+-+-.+.+-... . +
T Consensus 339 ~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~-P~E~f~~RKverf~~~~--------------~-~ 402 (546)
T KOG3783|consen 339 FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNL-PLEKFIVRKVERFVKRG--------------P-L 402 (546)
T ss_pred HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccC-chhHHHHHHHHHHhccc--------------c-c
Confidence 344444 45578888888888899999999999999998866421 11222222222111100 0 0
Q ss_pred cchhhHHHHHHHHHHHHHHh--CChHHHHHHHHh-hcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 312 ESKSMQAMCHAYAAVSYFCI--GDAESSSQAIDL-IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 312 ~d~~g~A~aL~NLA~vyl~~--Gd~e~~~qAL~L-~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL 388 (553)
+-...-|.=..-++.+|.-- ....+......- -.+.- .+...+..-.+.+|.++.++|+...|..++..++
T Consensus 403 ~~~~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~------~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 403 NASILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKI------DDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred cccccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCC------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00000010011122222111 112222211111 11111 1334477888899999999999999999999998
Q ss_pred HHHHHhccChHhHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHH
Q 008796 389 QIAHNHMGNLQLVSQYLTILGNLALALHD-TVQAREILRSSLTLA 432 (553)
Q Consensus 389 ~Lar~elGdr~leA~aL~~LG~i~lalGd-~~eA~~~l~~AL~LA 432 (553)
+---...-|.+....+++.||..++..|. ..++...+.+|-..+
T Consensus 477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 54334577899999999999999999999 888888887775443
No 322
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.18 E-value=1.7e+02 Score=32.55 Aligned_cols=103 Identities=16% Similarity=0.043 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccccccccccc
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 355 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~ 355 (553)
.-.++..+|..++.-|+++.|.+.|-++-.-.+...-...+..|+-.|-+..|++.. ..+|-.--.. ......
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~---~~~~~q 225 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA---NENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh---hhhHHH
Confidence 456899999999999999999999997655555566677888888889999999876 2333221100 000000
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008796 356 GVREEASLHFAYGLLLMRQQDFQEARNRLAKG 387 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eA 387 (553)
.+ -+.....-|++++.+++|..|..++-.+
T Consensus 226 ~v--~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EV--PAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hc--CcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 1223445677888888999998888655
No 323
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=53.94 E-value=46 Score=37.02 Aligned_cols=66 Identities=9% Similarity=-0.045 Sum_probs=54.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHC---Cc-------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 008796 246 VAVELTRSGFVEAQEALVQMKNWFIRF---PT-------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 311 (553)
Q Consensus 246 g~~~l~~Gr~aeAl~~l~qAL~L~r~~---~d-------l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~ 311 (553)
++.+++++.|+.|.-.|..||++|..- ++ -...-.+.+..-|-.+|..+++.+.|+.|..+++-..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 556689999999999999999999871 11 2234467788899999999999999999999887644
No 324
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.63 E-value=3.1e+02 Score=29.82 Aligned_cols=123 Identities=15% Similarity=0.039 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHC-CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cchhhHHHHHHHHHHHHHHh
Q 008796 256 VEAQEALVQMKNWFIRF-PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~-~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~---~d~~g~A~aL~NLA~vyl~~ 331 (553)
.+=++.+..+++=.+++ |. .....++...+.|++..|+-+.|+..|.+..+-+ |.+-...++...+|..|
T Consensus 81 eeki~eld~~iedaeenlGE---~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy--- 154 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE---SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY--- 154 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh---
Confidence 34455556666555554 33 4467789999999999999999999999777643 44567889999999999
Q ss_pred CChHH----HHHHHHhhcccccccccccchhHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 332 GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFA-YGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 332 Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~-LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
+|.+- .+.|=.++.+-| + +++=+-+-+ -|...+...++.+|-..|-+++.-+.
T Consensus 155 ~D~~lV~~~iekak~liE~Gg-------D-WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 155 LDHDLVTESIEKAKSLIEEGG-------D-WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred ccHHHHHHHHHHHHHHHHhCC-------C-hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 44443 666666666653 2 333333333 37778888899999999999988763
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.45 E-value=2.5e+02 Score=28.23 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 421 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA 421 (553)
-+.-.+.+|..|. .-+.++|+..|.++|.+.. .++ ..-...+..|+.++..+|++++|
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~--~~~-~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSN--PDD-NFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC--CCC-CCCHHHHHHHHHHHHHhcchhhh
Confidence 4677788887776 6789999999999999984 342 34467889999999999998876
No 326
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.63 E-value=3.5e+02 Score=29.69 Aligned_cols=216 Identities=14% Similarity=0.025 Sum_probs=139.8
Q ss_pred cccccccCCCCCCccccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHH
Q 008796 152 WGDKLVLAPSPMDGEWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMA 231 (553)
Q Consensus 152 ~~~~~~~~~~~~~~~WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a 231 (553)
.-+||.+.-| +++-+-.|++-...--...+.+.+.++-....++ .+-|..+..
T Consensus 53 ~a~kL~ssDP---------~~Vmart~a~gl~~iaa~s~v~~ak~~dqav~da-----v~y~~arEk------------- 105 (491)
T KOG2610|consen 53 SAEKLSSSDP---------EAVMARTFALGLVLIAAASNVEFAKKMDQAVIDA-----VKYGNAREK------------- 105 (491)
T ss_pred HHHHHhcCCh---------HHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHH-----HHHhhhHHh-------------
Confidence 4567766666 5666777776655556667777777776666655 555544331
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-
Q 008796 232 GVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI- 310 (553)
Q Consensus 232 ~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l- 310 (553)
+..-+.+.+-+|++.+|.....+. ...+|.-+. +...--..+.++|+...-...+++-+..
T Consensus 106 ----------~h~~aai~~~~g~~h~a~~~wdkl---L~d~PtDll-----a~kfsh~a~fy~G~~~~~k~ai~kIip~w 167 (491)
T KOG2610|consen 106 ----------RHAKAAILWGRGKHHEAAIEWDKL---LDDYPTDLL-----AVKFSHDAHFYNGNQIGKKNAIEKIIPKW 167 (491)
T ss_pred ----------hhhhHHHhhccccccHHHHHHHHH---HHhCchhhh-----hhhhhhhHHHhccchhhhhhHHHHhcccc
Confidence 111223347788888887776654 456676211 2233345667788888887777765554
Q ss_pred ccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 311 TESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK 386 (553)
Q Consensus 311 ~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~e 386 (553)
..+...-.++..-.|......|-|++ ..+||.+- +. -+-+....+-++.-.||+.|++++-.+
T Consensus 168 n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~------------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 168 NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RF------------DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-Cc------------chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 24455567777777777888888776 44554432 11 345667777788888999999999999
Q ss_pred HHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 008796 387 GLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSS 428 (553)
Q Consensus 387 AL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~A 428 (553)
.-...+ .|. -+.++..-.-+-.|..-+.++.|.+.|..-
T Consensus 235 ted~Wr--~s~-mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 235 TEDDWR--QSW-MLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred cccchh--hhh-HHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 988874 444 445555666666777778888888877653
No 327
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=52.48 E-value=40 Score=36.19 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
+|..-.+.+.-..+.|+.++|.+.+..||+++ ..-.++|..+|...-...+.-+|-.+|.+||++.
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlala-------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALA-------PTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcC-------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 44444455555678899999999999999996 2234689999999999999999999999999883
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=52.46 E-value=2.7e+02 Score=34.87 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=10.8
Q ss_pred HHHcCCHHHHHHHHH
Q 008796 291 AHSVGCYSEAAFHYV 305 (553)
Q Consensus 291 ~~alG~yeeAl~~f~ 305 (553)
...+++|+.|+.|.-
T Consensus 890 D~~L~ry~~AL~hLs 904 (1265)
T KOG1920|consen 890 DDYLKRYEDALSHLS 904 (1265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345778888887765
No 329
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=52.22 E-value=3.3e+02 Score=29.28 Aligned_cols=126 Identities=16% Similarity=0.076 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHC-CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHh
Q 008796 256 VEAQEALVQMKNWFIRF-PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~-~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~A~aL~NLA~vyl~~ 331 (553)
.+-++.+.++++=.+.. |. ...+.+..++|.|+...++.+.+.+...+.++.+-. .-..-.|...+|.+|
T Consensus 92 eeki~Elde~i~~~eedngE---~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y--- 165 (412)
T COG5187 92 EEKIEELDERIREKEEDNGE---TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIY--- 165 (412)
T ss_pred HHHHHHHHHHHHHHhhcccc---hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhh---
Confidence 44555555555544443 34 446789999999999999999999999988875544 335667788888888
Q ss_pred CChHHHHHHHHhhcccccccccccchhHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 332 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHF-AYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 332 Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~-~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
|+..-..+.|+...+++..- +-+++-+-+- -.|...+...++.+|-..|...|.-+
T Consensus 166 ~d~~vV~e~lE~~~~~iEkG----gDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 166 GDRKVVEESLEVADDIIEKG----GDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred ccHHHHHHHHHHHHHHHHhC----CCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 55554555555555543332 2233333332 24777888889999999999998876
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.39 E-value=32 Score=26.01 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 365 FAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 365 ~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
+.++.+|...|+++.|+..+.+.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6789999999999999999999983
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=50.21 E-value=95 Score=29.84 Aligned_cols=83 Identities=24% Similarity=0.197 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
|-.+.++.+..++++++...+.. +.+.+ |. .+-+...-|..+...|++++|...|+.-.+.. ....++.
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdA-LrvLr--P~-----~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~---~~~p~~k 81 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDA-LRVLR--PN-----LKELDMFDGWLLIARGNYDEAARILRELLSSA---GAPPYGK 81 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH-HHHhC--CC-----ccccchhHHHHHHHcCCHHHHHHHHHhhhccC---CCchHHH
Confidence 44566667778888888766543 33332 33 34478889999999999999999998433222 2223333
Q ss_pred HHHHHHHHHhCChH
Q 008796 322 AYAAVSYFCIGDAE 335 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e 335 (553)
--++.+....||++
T Consensus 82 AL~A~CL~al~Dp~ 95 (153)
T TIGR02561 82 ALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHhcCChH
Confidence 33445555556644
No 332
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=48.22 E-value=93 Score=31.18 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=48.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Q 008796 181 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 260 (553)
Q Consensus 181 tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~ 260 (553)
-+++...+|++++|.+..++|-..+.+.-+.++--+. +.+-|.|.--+.+|.||.-
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pe------------------------l~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPE------------------------LYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHH------------------------HHHHHhhcchHHHHHHHHH
Confidence 3577888999999999999999995554333332222 2223334444444555544
Q ss_pred HHHHHHHHHHHCCchhhhhHHHHHHHHHHHHH
Q 008796 261 ALVQMKNWFIRFPTILQACESMIEMLRGQYAH 292 (553)
Q Consensus 261 ~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~ 292 (553)
.+.=--+- ..|.....+.+-+.+.+|....
T Consensus 91 l~~~l~~~--~~ps~~EL~V~~~~YilGl~D~ 120 (204)
T COG2178 91 LYSILKDG--RLPSPEELGVPPIAYILGLADA 120 (204)
T ss_pred HHHHHhcC--CCCCHHHcCCCHHHHHHHHHHH
Confidence 44322221 2343334455666677777654
No 333
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.83 E-value=37 Score=37.41 Aligned_cols=73 Identities=11% Similarity=0.056 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhhccccccccc-ccc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDT-ING-VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~-~~~-lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
-+++..|..+|...|||.. ||..+.++.-..+. +.. .--...+++-+|.+|+-.+||.+|.+.|...|--..+
T Consensus 122 YFSligLlRvh~LLGDY~~---Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQ---ALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHHHHhccCHHH---HHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999775 44444433111000 000 0003568899999999999999999999999987754
No 334
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.47 E-value=3.3e+02 Score=27.90 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
+=.+.+.+|+.|. +.+. ...|-+.+|..+|.++...++|.+|..||. ..++....+.
T Consensus 68 ~r~~fi~~ai~WS-~~~~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl----~~~~~~~~~~ 124 (260)
T PF04190_consen 68 ERKKFIKAAIKWS-KFGS-YKFGDPELHHLLAEKLWKEGNYYEAERHFL----LGTDPSAFAY 124 (260)
T ss_dssp THHHHHHHHHHHH-HTSS--TT--HHHHHHHHHHHHHTT-HHHHHHHHH----TS-HHHHHHH
T ss_pred hHHHHHHHHHHHH-ccCC-CCCCCHHHHHHHHHHHHhhccHHHHHHHHH----hcCChhHHHH
Confidence 4677888999999 5444 245678999999999999999999999998 5555554443
No 335
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.29 E-value=35 Score=26.77 Aligned_cols=27 Identities=7% Similarity=-0.079 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNW 268 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L 268 (553)
|..++..+...|+|.+|.++...+|++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 568899999999999999999998877
No 336
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.83 E-value=61 Score=28.38 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=53.3
Q ss_pred cccchhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhccc
Q 008796 63 DYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLED 131 (553)
Q Consensus 63 ~~~~~~~~~~~ld~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (553)
.....-+.+-.||...++..++....+.-.|+++.-...+...| .++..|...-..|++++..+|.
T Consensus 23 ~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~---~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 23 GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG---EDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT---CCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888999999998888888888888988888899888 6777788777888888777553
No 337
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=46.70 E-value=1.3e+02 Score=29.18 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
|-.++++-+..++.+++...+. |+...| ...+.+...-|..+...|++.+|...|+.. .++..+...+-
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~-ALrvLR-------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l---~~~~~~~p~~k 81 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLD-ALRVLR-------PEFPELDLFDGWLHIVRGDWDDALRLLREL---EERAPGFPYAK 81 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHH-HHHHhC-------CCchHHHHHHHHHHHHhCCHHHHHHHHHHH---hccCCCChHHH
Confidence 5566777788888888776554 444433 334568889999999999999999999963 23334444445
Q ss_pred HHHHHHHHHhCChH
Q 008796 322 AYAAVSYFCIGDAE 335 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e 335 (553)
--+|++....||++
T Consensus 82 ALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 82 ALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHHHHcCChH
Confidence 55566666777755
No 338
>PF15605 Toxin_52: Putative toxin 52
Probab=46.25 E-value=66 Score=28.87 Aligned_cols=50 Identities=30% Similarity=0.445 Sum_probs=40.6
Q ss_pred HHHhHHH-HHHHHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhccc
Q 008796 82 KQKMQEI-QQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLED 131 (553)
Q Consensus 82 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (553)
+|.|+.- +-|.|--..|+.+|.-|.++.+.|+.|..++..--..|...|+
T Consensus 49 lqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~ 99 (103)
T PF15605_consen 49 LQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIED 99 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444432 6788889999999999999999999999999888877777554
No 339
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=44.67 E-value=3.7e+02 Score=27.63 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=11.1
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 008796 289 QYAHSVGCYSEAAFHYVEAA 308 (553)
Q Consensus 289 ~~~~alG~yeeAl~~f~~AL 308 (553)
....+.+..+.|...|.+|+
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~ 28 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRAR 28 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 33344444666666666664
No 340
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=44.52 E-value=1.8e+02 Score=26.59 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=49.7
Q ss_pred HHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhccChHh
Q 008796 325 AVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ----DFQEARNRLAKGLQIAHNHMGNLQL 400 (553)
Q Consensus 325 A~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qG----r~~EA~~~L~eAL~Lar~elGdr~l 400 (553)
|..++..|++- .||+++.+....+++... -...+..-|.++..++ +++-=.+++.-+++-+.+..+-...
T Consensus 3 A~~~~~rGnhi---KAL~iied~i~~h~~~~~---~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 3 AKDYFARGNHI---KALEIIEDLISRHGEDES---SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred HHHHHHccCHH---HHHHHHHHHHHHccCCCc---hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 34455556643 566666655433322221 1133444455554433 3444444555555554443333344
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 008796 401 VSQYLTILGNLALALHDTVQAREILRSSLT 430 (553)
Q Consensus 401 eA~aL~~LG~i~lalGd~~eA~~~l~~AL~ 430 (553)
-|..|..||.=.-.--.+.++..-.+++|.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 588898888755444444555555555443
No 341
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=43.86 E-value=82 Score=38.43 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=40.2
Q ss_pred CChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 332 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 332 Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
|++..+.+||.-+..+.+.++ . -.-+..-++||.++|+|+|=..+|.-|++-+
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 530 GDPRDFTQALSEFSYLHGGVG---A----PLEYLGKALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred CChHHHHHHHHHHHHhcCCCC---C----chHHHhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 455559999999888865542 1 2345667889999999999999999998754
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.61 E-value=4.4e+02 Score=30.02 Aligned_cols=165 Identities=12% Similarity=-0.034 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHccc
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS-----VGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~a-----lG~yeeAl~~f~~AL~l~~d 313 (553)
.+.+++.+......|+..+|.+.++.+...- + ......+|..+.. ..+.+.|..+|..|++.+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~g----~------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~ 281 (552)
T KOG1550|consen 212 QLSLEGEGNERNESGELSEAFKYYREAAKLG----H------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK 281 (552)
T ss_pred hccccccCcccccchhhhHHHHHHHHHHhhc----c------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666555442 2 3345556665553 35899999999998873111
Q ss_pred --hhhHHHHHHHHHHHHHHhCChHH--HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 008796 314 --KSMQAMCHAYAAVSYFCIGDAES--SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ---DFQEARNRLAK 386 (553)
Q Consensus 314 --~~g~A~aL~NLA~vyl~~Gd~e~--~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qG---r~~EA~~~L~e 386 (553)
..+...+...+|.+|....-... ...|+.++...-+. + -..+.+.+|.++.... ++..|..+|..
T Consensus 282 ~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----g----~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 282 AATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL----G----NPDAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred HHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc----C----CchHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 22355678899999988543222 55566665544111 1 3467899999998877 35677777766
Q ss_pred HHHHHHHhccChHhHHHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHH
Q 008796 387 GLQIAHNHMGNLQLVSQYLTILGNLALALH-----DTVQAREILRSSLTL 431 (553)
Q Consensus 387 AL~Lar~elGdr~leA~aL~~LG~i~lalG-----d~~eA~~~l~~AL~L 431 (553)
|-+ .+...+...||.+|. .| +...|..++.+|-+.
T Consensus 354 Aa~---------~G~~~A~~~la~~y~-~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 354 AAK---------AGHILAIYRLALCYE-LGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHH---------cCChHHHHHHHHHHH-hCCCcCCCHHHHHHHHHHHHHc
Confidence 633 333456666776553 33 666777777766543
No 343
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.35 E-value=74 Score=35.25 Aligned_cols=102 Identities=10% Similarity=-0.001 Sum_probs=69.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Q 008796 181 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQE 260 (553)
Q Consensus 181 tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~ 260 (553)
-.-|++-.|+++.|.++|-++-.-|... + . -+.+--|+..+-+.+|+|..-..
T Consensus 156 l~dhy~~cG~l~~Alr~YsR~RdYCTs~----k------------------h-----vInm~ln~i~VSI~~~nw~hv~s 208 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSRARDYCTSA----K------------------H-----VINMCLNLILVSIYMGNWGHVLS 208 (466)
T ss_pred HHHHHHHhccHHHHHhhhhhhhhhhcch----H------------------H-----HHHHHHHHHHHHHhhcchhhhhh
Confidence 3567888999999999999977774321 1 0 22334566667778888888888
Q ss_pred HHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 261 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 309 (553)
Q Consensus 261 ~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~ 309 (553)
+..+|..--..+....+..-+.+...-|+....++.|..|+.+|..+-.
T Consensus 209 y~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 209 YISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8877765521111122222344777888888889999999999986544
No 344
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=42.62 E-value=2.7e+02 Score=29.76 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhccCh-----------HhHHHHHHHHHHHHHHCCC-
Q 008796 359 EEASLHFAYGLLLMRQQDF---------QEARNRLAKGLQIAHNHMGNL-----------QLVSQYLTILGNLALALHD- 417 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~---------~EA~~~L~eAL~Lar~elGdr-----------~leA~aL~~LG~i~lalGd- 417 (553)
+++.++||+|.++...|-- .+|-.+|++|-.+++ -+.+. -+...++..|..+.+++-+
T Consensus 117 Eka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~-~l~e~~~~~~~~~~s~Dl~~~~l~~l~~lmLAQAQE 195 (346)
T cd09240 117 EKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFN-HLKETVLSALQQEPTPDLSPDTLSALSALMLAQAQE 195 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_pred -------------------hHHHHHHHHHHHHHHHHhC----------------ChHHHHHHHHHHHHHHHHcCCchHHH
Q 008796 418 -------------------TVQAREILRSSLTLAKKLY----------------DIPTQIWALSVLTALYQQLGDRGNEM 462 (553)
Q Consensus 418 -------------------~~eA~~~l~~AL~LArklg----------------D~~~qa~aL~~Lg~ly~alGd~~~A~ 462 (553)
..++.++|++|+....... -..-++.+..-.|......+++++|.
T Consensus 196 ~~~~Kai~~~~k~~liAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~GeaI 275 (346)
T cd09240 196 VFYLKATRDKMKDAIIAKLAAQAADYYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEEI 275 (346)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Q ss_pred HHHHHHHHHHHHHhh
Q 008796 463 ENDEYRRKKLDELQK 477 (553)
Q Consensus 463 e~~e~a~~~~d~L~~ 477 (553)
..++.+....+....
T Consensus 276 a~L~~A~~~~~~a~~ 290 (346)
T cd09240 276 ARLQHALELIKTAQS 290 (346)
T ss_pred HHHHHHHHHHHHHHH
No 345
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=41.82 E-value=69 Score=25.74 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.|..+...|.-.-..|++++|..+|.+|+...-
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 567777888888899999999999999998874
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=41.82 E-value=2.6e+02 Score=28.08 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHH
Q 008796 289 QYAHSVGCYSEAAFHYVEAAKITESK-SMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASL 363 (553)
Q Consensus 289 ~~~~alG~yeeAl~~f~~AL~l~~d~-~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~a 363 (553)
-|+++.-.-++|...|.++ .+.. ...+..+..||..|... |+++ +.++|++..+-. .+ -...
T Consensus 114 Yy~Wsr~~d~~A~~~fL~~---E~~~~l~t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~~-------~~--n~ei 180 (203)
T PF11207_consen 114 YYHWSRFGDQEALRRFLQL---EGTPELETAELQYALATYYTKR-DPEKTIQLLLRALELSNPDD-------NF--NPEI 180 (203)
T ss_pred HHHhhccCcHHHHHHHHHH---cCCCCCCCHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCC-------CC--CHHH
Confidence 5678787788899988733 2222 24577788899988864 4444 899999988751 11 3478
Q ss_pred HHHHHHHHHHcCCHHHH
Q 008796 364 HFAYGLLLMRQQDFQEA 380 (553)
Q Consensus 364 L~~LG~~~~~qGr~~EA 380 (553)
+..|+.+++.+|+++.|
T Consensus 181 l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHhcchhhh
Confidence 89999999999999987
No 347
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=40.59 E-value=3.4e+02 Score=29.05 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhccC-------hHhHHHHHHHHHHHHHHCC-----
Q 008796 358 REEASLHFAYGLLLMRQQD---------FQEARNRLAKGLQIAHNHMGN-------LQLVSQYLTILGNLALALH----- 416 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr---------~~EA~~~L~eAL~Lar~elGd-------r~leA~aL~~LG~i~lalG----- 416 (553)
.+++.++||+|.++...|. ..+|..+|++|--+++ -+.+ .-+...++..|..+.+++.
T Consensus 104 fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~-~l~e~~~~~ps~Dl~~~~l~~L~~lmLAQAQE~~~ 182 (348)
T cd09242 104 FEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQ-YINENFLHAPSVDLQQENVKFLVKLMLAQAQEIFL 182 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999977664 4567788888777653 2211 0122223333333222221
Q ss_pred -----C-------------hHHHHHHHHHHHHHHHHhCCh------------------HHHHHHHHHHHHHHHHcCCchH
Q 008796 417 -----D-------------TVQAREILRSSLTLAKKLYDI------------------PTQIWALSVLTALYQQLGDRGN 460 (553)
Q Consensus 417 -----d-------------~~eA~~~l~~AL~LArklgD~------------------~~qa~aL~~Lg~ly~alGd~~~ 460 (553)
+ ..++.++|++|....+...+. .-.+.+....|......+++++
T Consensus 183 ~Kai~~~~~~~k~sliaKLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~~~k~Ge 262 (348)
T cd09242 183 LKLINGDDAQKKASLISKLASATANLYESCVEFLKEIQEKGISYGDPKWISLVQCKAHYYKSLAAYYHALALEAAGKYGE 262 (348)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHhccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccHHH
Confidence 1 114667888888887653222 1223344455556666788999
Q ss_pred HHHHHHHHHHHHHHHh
Q 008796 461 EMENDEYRRKKLDELQ 476 (553)
Q Consensus 461 A~e~~e~a~~~~d~L~ 476 (553)
|...++.+.....+..
T Consensus 263 aIa~L~~A~~~l~~a~ 278 (348)
T cd09242 263 AIAYLTQAESILKEAN 278 (348)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988766543
No 348
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=39.70 E-value=4e+02 Score=29.00 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=74.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Q 008796 180 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 259 (553)
Q Consensus 180 ~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl 259 (553)
-...++-+-|+-+.|.+.+++.+.- .-.+|. ++-+...++.+-+.=++.+---
T Consensus 109 ~kaeYycqigDkena~~~~~~t~~k----tvs~g~-----------------------kiDVvf~~iRlglfy~D~~lV~ 161 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKTYEK----TVSLGH-----------------------KIDVVFYKIRLGLFYLDHDLVT 161 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH----Hhhccc-----------------------chhhHHHHHHHHHhhccHHHHH
Confidence 3344555667766666665555544 333332 2333334444445556777778
Q ss_pred HHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhh
Q 008796 260 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM 316 (553)
Q Consensus 260 ~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g 316 (553)
+.++.|..++++=||..+. .+.-.--|.|+++.++|.+|...|..++..+++...
T Consensus 162 ~~iekak~liE~GgDWeRr--NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El 216 (393)
T KOG0687|consen 162 ESIEKAKSLIEEGGDWERR--NRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYEL 216 (393)
T ss_pred HHHHHHHHHHHhCCChhhh--hhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceec
Confidence 8899999999999997665 445566799999999999999999999998888543
No 349
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=37.29 E-value=4.7e+02 Score=26.70 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHH
Q 008796 314 KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ-IAH 392 (553)
Q Consensus 314 ~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~-Lar 392 (553)
+...+.+....+.+....|.++....++..+.......+ .. ...+.+-.+.+.-.+|+..+|...+++.+. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~---~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE---SL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc---CC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 455667778888888999998876666665555421111 00 234556667888899999999999999988 221
Q ss_pred Hh--------------------------ccChHhHHHHHHHHHHHHHHC------CChHHHHHHHHHHHHHHHHhC
Q 008796 393 NH--------------------------MGNLQLVSQYLTILGNLALAL------HDTVQAREILRSSLTLAKKLY 436 (553)
Q Consensus 393 ~e--------------------------lGdr~leA~aL~~LG~i~lal------Gd~~eA~~~l~~AL~LArklg 436 (553)
.. .-+....|.++..+|.-.... ++..++...++.|..+.....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 11 112466688889999988888 888889999999987755443
No 350
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.15 E-value=15 Score=39.53 Aligned_cols=98 Identities=10% Similarity=0.056 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.|+-..+-+.-.+..|.+++|.++|..|+++. ...|.....-|.|++.++.+..|+.-|..|+.+ .+
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~ln-------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~ 179 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIELN-------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NP 179 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhcccccccccC-------CchhhhcccccceeeeccCCchhhhhhhhhhcc------Cc
Confidence 35555556666677888999999999998883 445666667889999999999999888877766 22
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
..+..+-.-|.+++.+|+.++|...++.+.+
T Consensus 180 Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 180 DSAKGYKFRGYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred ccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence 2233344556777888888888776666554
No 351
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.74 E-value=5.9e+02 Score=27.45 Aligned_cols=72 Identities=17% Similarity=0.082 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 008796 356 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 435 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl 435 (553)
+..+.+.++.++|..|...++.+.+.+.+++.+.-+- ..|-.-.+--+-..||-+|-.+ .++++.|+.++.+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~-stg~KiDv~l~kiRlg~~y~d~-------~vV~e~lE~~~~~ 181 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAM-STGLKIDVFLCKIRLGLIYGDR-------KVVEESLEVADDI 181 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-hcccchhhHHHHHHHHHhhccH-------HHHHHHHHHHHHH
Confidence 3455789999999999999999999999999999884 7888888888888899888443 4455555544443
No 352
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.62 E-value=5e+02 Score=26.58 Aligned_cols=93 Identities=15% Similarity=0.002 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHH-----------HHHHHHhCChHHH--HHHH
Q 008796 379 EARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSS-----------LTLAKKLYDIPTQ--IWAL 445 (553)
Q Consensus 379 EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~A-----------L~LArklgD~~~q--a~aL 445 (553)
+-..+..+|++-+ +..+.+.|...-...+|.+++..|++.+|+.|+--+ +..+...++.... -.+.
T Consensus 68 ~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R 146 (260)
T PF04190_consen 68 ERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR 146 (260)
T ss_dssp THHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH
T ss_pred hHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 4678888899988 467778899999999999999999999999885321 1122233333222 1122
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 446 SVLTALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 446 ~~Lg~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
..| -|...|+..-|.+.+..+.+...+
T Consensus 147 aVL--~yL~l~n~~~A~~~~~~f~~~~~~ 173 (260)
T PF04190_consen 147 AVL--QYLCLGNLRDANELFDTFTSKLIE 173 (260)
T ss_dssp HHH--HHHHTTBHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHhcCHHHHHHHHHHHHHHHhc
Confidence 222 466788888888888887766443
No 353
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=35.56 E-value=35 Score=28.94 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=35.9
Q ss_pred ccccchhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 008796 62 CDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQSL 102 (553)
Q Consensus 62 c~~~~~~~~~~~ld~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (553)
-|.|+..+-||.|.+++.......+.+.+|.+.|+++..+|
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l 51 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQL 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 47899999999999999998888888888988888887766
No 354
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.22 E-value=71 Score=35.24 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH----HHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 233 VYLMLLMQFLENKVAVELTRSGFVEAQEALVQM----KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAA 308 (553)
Q Consensus 233 vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qA----L~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL 308 (553)
+|-||=---+-.|..+|.-.|+|..|++.++.- ..++.+.|. +--.+++.+|-.++-++||.+|.+.|...|
T Consensus 116 l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~----~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 116 LYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPA----CHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcc----hheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454444556677888899999999999987542 223333333 334578889999999999999999999776
Q ss_pred H
Q 008796 309 K 309 (553)
Q Consensus 309 ~ 309 (553)
-
T Consensus 192 ~ 192 (404)
T PF10255_consen 192 L 192 (404)
T ss_pred H
Confidence 5
No 355
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=35.09 E-value=4.3e+02 Score=27.17 Aligned_cols=56 Identities=9% Similarity=-0.067 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHH-CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 255 FVEAQEALVQMKNWFIR-FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 310 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~-~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l 310 (553)
-+.|.+.|+.|.++... .|..-....+.++|.--.++.-++..++|.....+|+..
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34899999999999886 544223335667887777888899999999888877653
No 356
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=35.00 E-value=6.1e+02 Score=27.39 Aligned_cols=108 Identities=13% Similarity=0.052 Sum_probs=58.3
Q ss_pred HHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhcccCCCccccccccccccccccccccccccCCCCCCccccchhh
Q 008796 93 SELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWLPKSA 172 (553)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WLp~~~ 172 (553)
++|+.|.+..-.++.++.-+..|..-|.||-.=...+- +.....+ +..-.|.|-+. +.+.+..=+.=|-
T Consensus 45 ~~l~~LR~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp---~~~~~~~------~v~F~W~d~~~--~~~~~~~~l~fEk 113 (361)
T cd09239 45 KSLEQLRQEAVNPPRDFEGCSVLKRYYGQLHLLQSRFP---MGAGQEA------AVPFTWTDIFS--GSEVTHEDIKFEE 113 (361)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCC---CCccccc------cceeeeecccC--CCchhhhhHHHHH
Confidence 46777777777777777778888877777733222210 0000111 12225777665 2333332255566
Q ss_pred HHHHHHHHHHHHHh----cCC---CHHHHHHHHHHHHHHHHHHHHH
Q 008796 173 VYALVDLMVVILGR----PKG---LFKECMQRIQSGMQTIQDALLK 211 (553)
Q Consensus 173 ~~~Lv~l~tv~~~~----~~G---~~dka~ky~ekAL~~~~~~l~k 211 (553)
.+||..+-....-. .++ -+++|.++++.|--..+-+.+.
T Consensus 114 a~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~ 159 (361)
T cd09239 114 ASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREH 159 (361)
T ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665544433222 122 2778888888887775544443
No 357
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.80 E-value=72 Score=26.95 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHC
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRF 272 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~ 272 (553)
++..|-.-|.-.=..|+|++|++.|.+|++.|-.-
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e 39 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINT 39 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh
Confidence 44556666666677899999999999999999873
No 358
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=34.61 E-value=67 Score=27.62 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCC-CCCChhhhhhhhhhHHHHHHHHHh
Q 008796 90 QLSSELDALNQSLSR-PDLPSRERSALAGRQAKLQQRLRS 128 (553)
Q Consensus 90 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 128 (553)
+|+..|+.|.+.|.+ +.+.+.+|+.|+.--.+|+.+|..
T Consensus 1 kL~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~L~~ 40 (85)
T PF14357_consen 1 KLQELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQLAE 40 (85)
T ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 366777888888874 667999999999999999999988
No 359
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.40 E-value=3.9e+02 Score=32.35 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh-----------------hHHHHH--
Q 008796 261 ALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-----------------MQAMCH-- 321 (553)
Q Consensus 261 ~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~-----------------g~A~aL-- 321 (553)
.|.-|+.+......- ....+.++.--|.+....|+|++|..+|.+++.-.+-.. .++.--
T Consensus 349 ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~g 427 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKG 427 (933)
T ss_pred hHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcc
Confidence 356677777775442 345678999999999999999999999999887443211 111110
Q ss_pred -------HHHHHHHHHhCChHH----------------HHHHHHhhcccccccccccchhHH-HHHHHHHHHHHHHcCCH
Q 008796 322 -------AYAAVSYFCIGDAES----------------SSQAIDLIGPVYQMKDTINGVREE-ASLHFAYGLLLMRQQDF 377 (553)
Q Consensus 322 -------~NLA~vyl~~Gd~e~----------------~~qAL~L~r~lgd~~g~~~~lr~e-A~aL~~LG~~~~~qGr~ 377 (553)
.-|=.+|..++|-+. .+.|+++.+..+ -.++..-+-.+ ..-..++-.++...|+|
T Consensus 428 la~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~sn-yl~~a~~LA~k~~~he~vl~ille~~~ny 506 (933)
T KOG2114|consen 428 LANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSN-YLDEAELLATKFKKHEWVLDILLEDLHNY 506 (933)
T ss_pred cccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhC-hHHHHHHHHHHhccCHHHHHHHHHHhcCH
Confidence 112236666666553 567777776541 00000000000 11134556677888999
Q ss_pred HHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 378 QEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 378 ~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
+||.+++.. |.+. ..-.+++.-|.+.+. ..|.+-..++-+-.+.
T Consensus 507 ~eAl~yi~s-lp~~--------e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~ 550 (933)
T KOG2114|consen 507 EEALRYISS-LPIS--------ELLRTLNKYGKILLE-HDPEETMKILIELITE 550 (933)
T ss_pred HHHHHHHhc-CCHH--------HHHHHHHHHHHHHHh-hChHHHHHHHHHHHhh
Confidence 999988642 2332 223355566665544 3566666655544443
No 360
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=32.88 E-value=97 Score=26.04 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.|..+...|.-.-..|+|++|..+|.+|+....
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 566677777888889999999999999999874
No 361
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.44 E-value=86 Score=26.49 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
+|..+..-|.---..|+|++|.+.|.+||+.+-.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 5666777777778889999999999999999853
No 362
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=31.98 E-value=6.2e+02 Score=26.54 Aligned_cols=76 Identities=12% Similarity=-0.059 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCC-cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------------
Q 008796 189 GLFKECMQRIQSGMQTIQDALLKLGITDG-VREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR--------------- 252 (553)
Q Consensus 189 G~~dka~ky~ekAL~~~~~~l~klG~~~~-~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~--------------- 252 (553)
..+++|.+++++|--..+-..+..-.... ..-+|+.+.. |.++....||.++...
T Consensus 135 ~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~---------l~~l~~l~LAqAQe~~~~ka~~~~~~~~~li 205 (345)
T cd09034 135 EDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAV---------LSALSLIMLAQAQECFLLKAEEDKKAKLSLL 205 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHH---------HHHHHHHHHHHHHHHHHHHHHhcccCcHHHH
Confidence 45788888888888776554333221111 0124554431 2333333444333211
Q ss_pred -CCHHHHHHHHHHHHHHHHHCC
Q 008796 253 -SGFVEAQEALVQMKNWFIRFP 273 (553)
Q Consensus 253 -Gr~aeAl~~l~qAL~L~r~~~ 273 (553)
.=-.++.++|++|.+.+...+
T Consensus 206 akLa~~~~~~y~~A~~~l~~~~ 227 (345)
T cd09034 206 ARLACEAAKYYEEALKCLSGVD 227 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 112367778888888877644
No 363
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=31.97 E-value=5.5e+02 Score=28.36 Aligned_cols=118 Identities=22% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCC--------------------------HHHHHHHHHHHHHHHHHhccCh--------------
Q 008796 359 EEASLHFAYGLLLMRQQD--------------------------FQEARNRLAKGLQIAHNHMGNL-------------- 398 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr--------------------------~~EA~~~L~eAL~Lar~elGdr-------------- 398 (553)
+++.+++++|.++...+. ...|-.+|++|--++ .-+-+.
T Consensus 115 E~a~VLfnla~l~S~~A~~~l~~~~~~~~~~~is~~~~~~~~e~lK~A~~~l~~AAGvf-~~L~~~~l~~~~~~~~~~~~ 193 (413)
T cd09245 115 ELAFVLLTYAYALSNLARSILAPLGAYETDRSISDASRKQRDERLKAATKLLCKAAGIF-DYLATRVLPQWESNRGGAPP 193 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHHH-HHHHhcccccccccccCCCC
Q ss_pred --HhHHHHHHHHHHHHHHCCChH--------------------------------------HHHHHHHHHHHHHHHhCCh
Q 008796 399 --QLVSQYLTILGNLALALHDTV--------------------------------------QAREILRSSLTLAKKLYDI 438 (553)
Q Consensus 399 --~leA~aL~~LG~i~lalGd~~--------------------------------------eA~~~l~~AL~LArklgD~ 438 (553)
-+...++..|..+.+++..-- ++.++|++|.......+..
T Consensus 194 ~~DLs~~~l~aL~~L~LAqAQel~~~K~~~~~~~~d~~~~~~ap~~~k~~~s~sLiAKLa~~~~~~y~~A~~~l~~~~~~ 273 (413)
T cd09245 194 PPDLSPEVLSALSSLALAEATLLAVRKLDPYPAAVDKDWMTPGPPLPKVHPSAHLLARLCLAASEHAESARALLSTPGSK 273 (413)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhcccCcccccccccHHHHHHHHHHHHHHHHHHHHHHhccccc
Q ss_pred -------------------HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Q 008796 439 -------------------PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 439 -------------------~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~ 477 (553)
..++.+..-+|......|++++|...++.+.........
T Consensus 274 ~~~~~i~~~~~~yl~~k~~~~~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~~~~ 331 (413)
T cd09245 274 RGSGEVSEELLRYLSDLRRVARALACKFLGIDAGENGKVGEAIGWLRAAKKELEDLKS 331 (413)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHHhhh
No 364
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=31.89 E-value=1.5e+02 Score=29.36 Aligned_cols=62 Identities=10% Similarity=-0.001 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH
Q 008796 258 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC 330 (553)
Q Consensus 258 Al~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~ 330 (553)
|.++|.+|..+. |+ .+..++.+|.++...|+.=+|.-+|-+|+ ..+.+- ..+..||..+...
T Consensus 1 A~~~Y~~A~~l~---P~-----~G~p~nQLAvl~~~~~~~l~avy~y~Rsl-~~~~Pf--~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL---PS-----NGNPYNQLAVLASYQGDDLDAVYYYIRSL-AVRIPF--PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH----TT-----BSHHHHHHHHHHHHTT-HHHHHHHHHHHH-SSSB----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC---CC-----CCCcccchhhhhccccchHHHHHHHHHHH-hcCCCc--HHHHHHHHHHHHH
Confidence 678899998885 44 24589999999999999999999999998 445444 5566666666655
No 365
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=31.77 E-value=1.2e+02 Score=24.81 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.+|..+...|.-.-..|++++|..+|.+|++..-
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~ 39 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLL 39 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3677777788888889999999999999999874
No 366
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.75 E-value=3.4e+02 Score=31.80 Aligned_cols=79 Identities=19% Similarity=0.103 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHH
Q 008796 283 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEAS 362 (553)
Q Consensus 283 ~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~ 362 (553)
=...||.++.+.|.+..|.++|..|-. +..|=+.|...|+.+.+..+-...++.|
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~l~~la~~~~~~g-------------- 722 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARD-----------LGSLLLLYTSSGNAEGLAVLASLAKKQG-------------- 722 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcc-----------hhhhhhhhhhcCChhHHHHHHHHHHhhc--------------
Confidence 356789999999999999999995543 2334455666677665444433333332
Q ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHH
Q 008796 363 LHFAYG-LLLMRQQDFQEARNRLAKG 387 (553)
Q Consensus 363 aL~~LG-~~~~~qGr~~EA~~~L~eA 387 (553)
.+|++ .+++..|+++++++.|.++
T Consensus 723 -~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 -KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 12333 4677889999998888766
No 367
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=31.43 E-value=1.2e+02 Score=21.80 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HHHHH
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLA--KGLQI 390 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~--eAL~L 390 (553)
.++.+|.....+|++++|+..++ -+..+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46788999999999999999954 54433
No 368
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=31.42 E-value=1.1e+02 Score=25.63 Aligned_cols=33 Identities=15% Similarity=-0.016 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
+|..+..-|.-.-..|+|++|..+|.+||+.+-
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 667777778888888999999999999999874
No 369
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=30.99 E-value=34 Score=38.55 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=21.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 008796 77 AMKADKQKMQEIQQLSSELDALNQSLS 103 (553)
Q Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (553)
|+.++.+.+|+|++|++||+.|++++.
T Consensus 22 a~~~~~~~~qkie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 22 AMADDIDLLQKIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 445565666799999999999998877
No 370
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.95 E-value=34 Score=36.96 Aligned_cols=92 Identities=17% Similarity=0.117 Sum_probs=63.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 008796 182 VILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEA 261 (553)
Q Consensus 182 v~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~ 261 (553)
.+-+...|.|++|+..+.+|+.. .+. -+++.-.-+.+.+..+..-.|++.
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l----------np~--------------------~a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL----------NPP--------------------LAILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred HHHHhcCcchhhhhccccccccc----------CCc--------------------hhhhcccccceeeeccCCchhhhh
Confidence 34555666777776666666655 111 123344555666899999999999
Q ss_pred HHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 008796 262 LVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT 311 (553)
Q Consensus 262 l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~ 311 (553)
+..|++| .||. +.-+-..|.....+|.+++|...|..|.++-
T Consensus 171 ~d~A~ei---n~Ds-----a~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 171 CDFAIEI---NPDS-----AKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred hhhhhcc---Cccc-----ccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 9999888 4452 3345667788888999999999999887754
No 371
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.75 E-value=5.2e+02 Score=28.25 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=74.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHH-HHHH-H
Q 008796 372 MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWA-LSVL-T 449 (553)
Q Consensus 372 ~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~a-L~~L-g 449 (553)
...++.++|.+++++-..-.+ +.-.+-.+......+|.+++..||..++++.+...=..-..+.+.+--..+ .+.+ .
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~-~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLK-EYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHH-hhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 344689999999999998885 566677889999999999999999999999988877777777665542222 2333 3
Q ss_pred HHHHHcCCchHHHHHHHHHHHHH
Q 008796 450 ALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 450 ~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
.-|+.-|++.....+.=.+....
T Consensus 165 qYyk~~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 165 QYYKKIGDFASYYRHALLYLGCS 187 (380)
T ss_pred HHHHHHHhHHHHHHHHHHHhccc
Confidence 46777788877766655555444
No 372
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.34 E-value=1e+02 Score=25.79 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.+|..+...|.-.-..|+|++|.++|.++++..-
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~ 37 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLL 37 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3677777888888888999999999999999974
No 373
>PRK10941 hypothetical protein; Provisional
Probab=30.26 E-value=2.8e+02 Score=28.85 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=60.2
Q ss_pred hccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 394 HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 394 elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
...++......+++|-.+|...+++..|..+.+..|.+. +|.+.+.+ .-|-+|..+|.+..|.+=++.+....
T Consensus 173 ~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~---P~dp~e~R---DRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 173 EADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFD---PEDPYEIR---DRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC---CCCHHHHH---HHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 567778889999999999999999999999999999875 55444443 46778999999999998888876654
No 374
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=30.24 E-value=6.9e+02 Score=26.52 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhcCCC-CCChhhhhhhhhhHHHHHHHHHhcccCCCccccccccccccccccccccccccCCCCCCccc
Q 008796 89 QQLSSELDALNQSLSRP-DLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEW 167 (553)
Q Consensus 89 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 167 (553)
++--++++.+.+.+..+ +-++.-+..|..-+.+| ..|+..- +.+.++ +.| .|.|-+..+.+-....
T Consensus 35 ~~~l~~l~~lR~~~~~~~~~~~~~~~~l~~Y~~~L----~~l~~~~--p~~~~~-i~F-----~W~d~~~~~~~~~~~~- 101 (377)
T PF03097_consen 35 DEDLKELDKLRQDARNPQSPSESGLKLLEEYYPQL----ESLEKRF--PSDQIQ-ISF-----TWSDSLSTGKPVSQSS- 101 (377)
T ss_dssp HHHHHHHHHHHHHHHTSS-SSHHHHHHHHHHHHHH----HHHCCCS--CSSCCT-T-E-----EEE-TTSTTSEEEESS-
T ss_pred HHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH----HHHHHhc--ccccce-eeE-----eeeccccCCCcccchh-
Confidence 44445566666666666 55666666665555544 4433322 122222 121 4655553332211111
Q ss_pred cchhhHHHHHHHHHHH---HHh----cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhh
Q 008796 168 LPKSAVYALVDLMVVI---LGR----PKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS 226 (553)
Q Consensus 168 Lp~~~~~~Lv~l~tv~---~~~----~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~ 226 (553)
+-=|-.+||.-+.... -.. ....+++|..++++|--+.+-+.+.....+. .|+++.
T Consensus 102 ~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s---~Dl~~~ 164 (377)
T PF03097_consen 102 LAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDSPS---PDLSPE 164 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS-SS---GGGSHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhcccCC---CcCCHH
Confidence 2223444443332222 221 2245788889999998887776666444443 355433
No 375
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.14 E-value=7.3e+02 Score=26.49 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHH--HHHHHH--HHHHHHHHhh-CCHHHHHHHHHH
Q 008796 190 LFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLM--LLMQFL--ENKVAVELTR-SGFVEAQEALVQ 264 (553)
Q Consensus 190 ~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~--L~a~lL--enLg~~~l~~-Gr~aeAl~~l~q 264 (553)
.+++|+...-.+... ..+++-... -+|+ .+.+.-+|.- ...-++ .|++.+.--. .+-.+=-+++..
T Consensus 41 ~~~~aieL~~~ga~~----ffk~~Q~~s--aaDl---~~~~le~~eka~~ad~~~~~anl~~ll~e~~~~eper~~~v~r 111 (312)
T KOG3024|consen 41 AHEDAIELLYDGALC----FFKLKQRGS--AADL---LVLVLEVLEKAEVADSLLKVANLAELLGEADPSEPERKTFVRR 111 (312)
T ss_pred hhhhHHHHHHHHHHH----HHHhccCCC--chhH---HHHHHHHHHHHHhhHhHHHHHHHHHHHhhcCCCccHHHHHHHH
Confidence 677888777777776 555543322 1232 2333333311 001111 3333332222 233344567889
Q ss_pred HHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 265 MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 265 AL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
|++|-.+.+.. ..|-+.+|..+|.+....+++.+|..||. +..|.+..|.
T Consensus 112 aikWS~~~~~~-k~G~p~lH~~la~~l~~e~~~~~a~~HFl----l~~d~s~~a~ 161 (312)
T KOG3024|consen 112 AIKWSKEFGEG-KYGHPELHALLADKLWTEDNVEEARRHFL----LSEDGSKFAY 161 (312)
T ss_pred HHHHHhhcCCC-CCCCHHHHHHHHHHHHhcccHHHHHhHhh----hcCChHHHHH
Confidence 99999886431 35568899999999999999999999999 7777777776
No 376
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=29.12 E-value=4.7e+02 Score=26.45 Aligned_cols=176 Identities=14% Similarity=0.067 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhcccCCCccccccccccccccccccccccccCCCCCCcccc
Q 008796 89 QQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVLAPSPMDGEWL 168 (553)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL 168 (553)
.+..+-+..+... .+.|...||+.|+--|..+=...++ |..-..+++ .|-... +.
T Consensus 18 ~dmv~~mk~~~~~--~~eLt~eERnLlsvayKn~i~~~R~----s~R~l~~~e------------~~~~~~-----~~-- 72 (236)
T PF00244_consen 18 DDMVEYMKQLIEM--NPELTEEERNLLSVAYKNVIGSRRA----SWRILSSIE------------QKEENK-----GN-- 72 (236)
T ss_dssp HHHHHHHHHHHHT--SS---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------HHHHTT-----TT--
T ss_pred HHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhccccchH----HHHhhhhHh------------hhhccc-----ch--
Confidence 4444445555554 8899999999999888666555544 000000000 000000 00
Q ss_pred chhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHH-HHHHHHHHHHHHHH
Q 008796 169 PKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGV-YLMLLMQFLENKVA 247 (553)
Q Consensus 169 p~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~v-y~~L~a~lLenLg~ 247 (553)
...+-.+-.+..- --++-...+...++.+++.+-..-.. -.+.| |..++.-....++-
T Consensus 73 -~~~~~~i~~yk~k-------ie~EL~~~C~eii~lId~~Lip~~~~-------------~eskvfy~KmkgDyyRYlaE 131 (236)
T PF00244_consen 73 -EKQVKLIKDYKKK-------IEDELIDICNEIIRLIDKSLIPSATS-------------PESKVFYYKMKGDYYRYLAE 131 (236)
T ss_dssp -HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTCHHHS-S-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccccc-------------hhHHHHHHHHhccccccccc
Confidence 1112222122111 13455566667777755433322111 11233 33334444444444
Q ss_pred HHHhh---CCHHHHHHHHHHHHHHHHH-CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 248 VELTR---SGFVEAQEALVQMKNWFIR-FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 310 (553)
Q Consensus 248 ~~l~~---Gr~aeAl~~l~qAL~L~r~-~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l 310 (553)
+.... .-...|.+.|++|+++... .|..-....+.++|.--.++.-+|+.++|.....+|+..
T Consensus 132 ~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 132 FDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 33111 1237899999999999999 554333446677777778888899999999999888764
No 377
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=28.86 E-value=6.4e+02 Score=25.76 Aligned_cols=104 Identities=19% Similarity=0.148 Sum_probs=64.6
Q ss_pred HHcCCHHHHHHHHHHHHHHccc------hhh---HHHHHHHHHHHHHHhCChHH--HHHHHHhhcccccccccccchhHH
Q 008796 292 HSVGCYSEAAFHYVEAAKITES------KSM---QAMCHAYAAVSYFCIGDAES--SSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 292 ~alG~yeeAl~~f~~AL~l~~d------~~g---~A~aL~NLA~vyl~~Gd~e~--~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
.-.|+|+.|++...-|++.--. +.. .|--..+-|..-...|.+-+ +.+.+.-+...-|.+ + .-+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmp----d-~vr 168 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMP----D-EVR 168 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCC----h-HHH
Confidence 4478999999999999984322 122 22223344445556666433 444444443333443 1 225
Q ss_pred HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHHHHHhccChHhH
Q 008796 361 ASLHFAYGLLLM---------RQQDFQEARNRLAKGLQIAHNHMGNLQLV 401 (553)
Q Consensus 361 A~aL~~LG~~~~---------~qGr~~EA~~~L~eAL~Lar~elGdr~le 401 (553)
|--+-..|.+++ ..+++..|..+|++|+.+- ..+|-....
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~-~k~GVK~~i 217 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLN-DKCGVKKDI 217 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhC-CCCChHHHH
Confidence 667777788884 4568899999999999996 467765443
No 378
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.79 E-value=49 Score=37.05 Aligned_cols=91 Identities=13% Similarity=0.177 Sum_probs=70.7
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 008796 185 GRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 264 (553)
Q Consensus 185 ~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~q 264 (553)
+..-+.|+.|...|.||++. ++ + -+.+--+-+.+++..++|..|+..+..
T Consensus 14 ~l~~~~fd~avdlysKaI~l---------dp-n--------------------ca~~~anRa~a~lK~e~~~~Al~Da~k 63 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL---------DP-N--------------------CAIYFANRALAHLKVESFGGALHDALK 63 (476)
T ss_pred hcccchHHHHHHHHHHHHhc---------CC-c--------------------ceeeechhhhhheeechhhhHHHHHHh
Confidence 45667899999999998887 11 1 122235556788999999999999999
Q ss_pred HHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Q 008796 265 MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 265 AL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d 313 (553)
|+++- |+. ..++...|.++++++.|-+|..-|+......-+
T Consensus 64 aie~d---P~~-----~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 64 AIELD---PTY-----IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred hhhcC---chh-----hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcC
Confidence 98874 663 447788899999999999999999988877655
No 379
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.50 E-value=8.3e+02 Score=26.89 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVE 306 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~ 306 (553)
.-...+.-.+..++|..|.+.+.+++.- .-.|..-...........|..++-.-+|++|..++..
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r-~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRR-LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3345566778999999999999998854 1123322344555666678888889999999999973
No 380
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=28.35 E-value=1.4e+02 Score=24.67 Aligned_cols=33 Identities=12% Similarity=0.020 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.|..+...|.-.-..|+|++|..+|.+|+...-
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 667777788888889999999999999999874
No 381
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=28.23 E-value=4.6e+02 Score=23.90 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhh
Q 008796 198 IQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQ 277 (553)
Q Consensus 198 ~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~ 277 (553)
|-|||+++++.+.+-|.... .| +...++=.++..++ -...+++-=..++.-+++-+.+...+ .
T Consensus 12 hiKAL~iied~i~~h~~~~~----------~~---~lh~~QG~if~~lA---~~ten~d~k~~yLl~sve~~s~a~~L-s 74 (111)
T PF04781_consen 12 HIKALEIIEDLISRHGEDES----------SW---LLHRLQGTIFYKLA---KKTENPDVKFRYLLGSVECFSRAVEL-S 74 (111)
T ss_pred HHHHHHHHHHHHHHccCCCc----------hH---HHHHHHhHHHHHHH---HhccCchHHHHHHHHhHHHHHHHhcc-C
Confidence 45667776666666664443 22 11122333333333 44567787788888888888886553 2
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 278 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 310 (553)
Q Consensus 278 ~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l 310 (553)
...|+.+..+|.-..+.--|.++..-..++|..
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 334888888888887777888888888777754
No 382
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=27.94 E-value=1.4e+02 Score=25.21 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.|..+...+.-.-..|+|++|..+|.+|++...
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 566667777788889999999999999999874
No 383
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=27.84 E-value=8e+02 Score=26.55 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 008796 401 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 435 (553)
Q Consensus 401 eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl 435 (553)
.|.+....|.+....+++++|+..++.|..+.++.
T Consensus 247 ~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a 281 (353)
T cd09243 247 LAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKA 281 (353)
T ss_pred HHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666666666666666655443
No 384
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=27.66 E-value=8.3e+02 Score=26.66 Aligned_cols=176 Identities=14% Similarity=0.028 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-chh--hHHHHHHHHHHHHHHhCCh----------HH-HHHHHHhhccc
Q 008796 282 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITE-SKS--MQAMCHAYAAVSYFCIGDA----------ES-SSQAIDLIGPV 347 (553)
Q Consensus 282 ~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~-d~~--g~A~aL~NLA~vyl~~Gd~----------e~-~~qAL~L~r~l 347 (553)
...+.||+++.-+|+|+-|...|+...+-+. |.. -.|-|+--.|++.+..|.. +. ++.|...+...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 3567799999999999999999998877553 222 2345555566666666643 12 77777766663
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhccChHhHHHHHHHHHHHH--HHCCChHHHHHH
Q 008796 348 YQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA-HNHMGNLQLVSQYLTILGNLA--LALHDTVQAREI 424 (553)
Q Consensus 348 gd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La-r~elGdr~leA~aL~~LG~i~--lalGd~~eA~~~ 424 (553)
.....+.. .....+....+.+....|.|.+|-..+-+..... .+.++. .+.|-.+=.+|..+ .....+..-
T Consensus 289 ~~~~~~~~--~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~-~~~alllE~~a~~~~~~~~~~~~~~--- 362 (414)
T PF12739_consen 289 ALPRCSLP--YYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRP-FGSALLLEQAAYCYASLRSNRPSPG--- 362 (414)
T ss_pred hccccccc--cchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHHHhhcccccCCCCcc---
Confidence 22100110 1245677778888889999999888877776552 112222 33666666777777 443111000
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 425 LRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 425 l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
.+-.||.+-. +..=|.-|..+|....|..+|..+..+-+
T Consensus 363 ----~~r~RK~af~------~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 363 ----LTRFRKYAFH------MVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ----chhhHHHHHH------HHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 0001111100 11223566777888888887777766543
No 385
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=27.62 E-value=1.5e+02 Score=25.06 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALL 210 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~ 210 (553)
+.-|+...+-....|.+.+|+.+|+.|.+..-+.+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 566888899999999999999999999999544433
No 386
>PF12854 PPR_1: PPR repeat
Probab=27.33 E-value=99 Score=21.50 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQM 265 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qA 265 (553)
.+.|+..+...|+.++|.+.+.++
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 477888889999999999998875
No 387
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=26.96 E-value=6.9e+02 Score=27.00 Aligned_cols=116 Identities=17% Similarity=0.092 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhccCh--------HhHHHHHHHHHHHHHHCC---
Q 008796 357 VREEASLHFAYGLLLMRQQD---------FQEARNRLAKGLQIAHNHMGNL--------QLVSQYLTILGNLALALH--- 416 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qGr---------~~EA~~~L~eAL~Lar~elGdr--------~leA~aL~~LG~i~lalG--- 416 (553)
..++|+++||+|.+|...|- ..+|-.+|+.|--.+. .+.+. -+...++..|-.+.+++-
T Consensus 110 ~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~-~l~e~~~~~~~~~Dl~~~~l~~L~~lmLAQAQEc 188 (361)
T cd09239 110 KFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFA-YLREHYPQVYGAVDMSSQLLSFNYSLMLAQAQEC 188 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH-HHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 35579999999999987662 5567778888766652 22221 222333333333333321
Q ss_pred -----------------ChHHHHHHHHHHHHHHHHhCC-------hH--------------HHHHHHHHHHHHHHHcCCc
Q 008796 417 -----------------DTVQAREILRSSLTLAKKLYD-------IP--------------TQIWALSVLTALYQQLGDR 458 (553)
Q Consensus 417 -----------------d~~eA~~~l~~AL~LArklgD-------~~--------------~qa~aL~~Lg~ly~alGd~ 458 (553)
=..++.++|++|+......+. .. -.+.+....|......+++
T Consensus 189 ~~~Kai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k~ 268 (361)
T cd09239 189 LLEKSLLDNRKSHITAKVSAQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQKM 268 (361)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 112355778888887665211 11 1222334445555555667
Q ss_pred hHHHHHHHHHHHHHH
Q 008796 459 GNEMENDEYRRKKLD 473 (553)
Q Consensus 459 ~~A~e~~e~a~~~~d 473 (553)
++|...++.+.....
T Consensus 269 Ge~Ia~L~~A~~~l~ 283 (361)
T cd09239 269 GERVAYYQLANDKLE 283 (361)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766666433
No 388
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.85 E-value=1.2e+03 Score=28.05 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=28.8
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHH----HHHHHHHHcCCchHHHHHHHHHH
Q 008796 410 NLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALS----VLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 410 ~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~----~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
.+|...|+..+|....++-=.+.....-+++|--+-+ .--.+|...|+..+|...+++-.
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 4455666666666654443333333322222222211 11145666677777766655543
No 389
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=26.85 E-value=1.2e+02 Score=27.78 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHh
Q 008796 91 LSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRS 128 (553)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (553)
|.+.+-.+++-|++++||+.-|.++...-..++.+|..
T Consensus 2 lK~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~~~l~~ 39 (114)
T PF10153_consen 2 LKKRIRDIERLLKRKDLPADVRVEKERELEALKRELEE 39 (114)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999888888888888776
No 390
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.67 E-value=93 Score=33.12 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=44.4
Q ss_pred cCCchHHHHHHHHhhHHhhhcCcccccccchHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHH
Q 008796 15 WDDENSVLRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKA 80 (553)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ld~~~~~ 80 (553)
|+++..++++...|.. ....|=--+.-.|| |+.|-|++-+++==+.=+.+----++++|+||+.
T Consensus 159 ~T~~e~~~~~~~f~~~-lGk~pV~v~kd~pG-Fi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~ 222 (321)
T PRK07066 159 RTAPEAVDAAMGIYRA-LGMRPLHVRKEVPG-FIADRLLEALWREALHLVNEGVATTGEIDDAIRF 222 (321)
T ss_pred CCCHHHHHHHHHHHHH-cCCEeEecCCCCcc-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 8999999999999876 55556566667888 5778877766543332233333457889999873
No 391
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.76 E-value=2.7e+02 Score=31.38 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=43.4
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 008796 166 EWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDG 217 (553)
Q Consensus 166 ~WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~ 217 (553)
.==|..+++.-.+|+.++.++.+|+-++|..+++.|-.- +..+.+.+.
T Consensus 258 ~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~----l~elki~d~ 305 (568)
T KOG2561|consen 258 GQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK----LLELKINDE 305 (568)
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----HHHeeccch
Confidence 335889999999999999999999999999999999988 888888876
No 392
>PF12854 PPR_1: PPR repeat
Probab=25.67 E-value=1.3e+02 Score=20.87 Aligned_cols=26 Identities=8% Similarity=-0.178 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAK 386 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~e 386 (553)
..+++.+=..+.+.|+.++|.+.+.+
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 46778888889999999999998875
No 393
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=24.93 E-value=1.6e+02 Score=24.63 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIR 271 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~ 271 (553)
++..|-.-|.-.=..|+|++|+..|.++++.|..
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3444555555566778888888888888888776
No 394
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=24.88 E-value=3e+02 Score=23.63 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
..+.+.+|.++...|++++|.+.|-+.++..+
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 36789999999999999999999998888753
No 395
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=24.61 E-value=7.4e+02 Score=30.30 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
-.+..-=|.++.++|+.++....|+-....+ ++ --.++..+-.+|..+|.+++|..+|+++..-. ++
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~---~~------D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~----P~ 109 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLK---GT------DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY----PS 109 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCC---CC------chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC----Cc
Confidence 3445556778888999776223333333221 11 22578889999999999999999999997653 22
Q ss_pred hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 008796 398 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALS 446 (553)
Q Consensus 398 r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~ 446 (553)
. .-+..+=..|.+-+++. .+=+-|+++.+..|.++-=-|+-.
T Consensus 110 --e--ell~~lFmayvR~~~yk---~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 110 --E--ELLYHLFMAYVREKSYK---KQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred --H--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCcccchHHHHH
Confidence 1 22333444455555553 344567888888888776666543
No 396
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.34 E-value=1.5e+03 Score=28.62 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=31.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d 313 (553)
..++.+.+..|...+|++.|- +..| +..+...-..+...|.|++-..+..-|-+-.++
T Consensus 1108 sqlakAQL~~~~v~dAieSyi-------kadD------ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYI-------KADD------PSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHH-------hcCC------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 345555556666555554443 2233 123344445566677777777777755554444
No 397
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.26 E-value=2.3e+02 Score=31.05 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhH-HHHHHHHHHHHHHCCChHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV-SQYLTILGNLALALHDTVQ 420 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~le-A~aL~~LG~i~lalGd~~e 420 (553)
...-+...|.-++.++++++|...|.+|..++-..-|....+ ..+|+.-|..++..++...
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999999999999999999999997666675554 8899999999998876544
No 398
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=24.25 E-value=8.7e+02 Score=25.73 Aligned_cols=34 Identities=21% Similarity=0.063 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHHHHHH
Q 008796 238 LMQFLENKVAVELTR---------SGFVEAQEALVQMKNWFIR 271 (553)
Q Consensus 238 ~a~lLenLg~~~l~~---------Gr~aeAl~~l~qAL~L~r~ 271 (553)
++.+|.|+|.++... ..+.+|..++.+|--+|.-
T Consensus 106 ~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~ 148 (377)
T PF03097_consen 106 KACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQY 148 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Confidence 455566666665543 3456788888888887765
No 399
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=23.95 E-value=1.5e+02 Score=25.22 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
+.+|....+.|+-+-..|+.++|+.+|++++.+.-+
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEE 40 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888899999888888743
No 400
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.50 E-value=1.5e+03 Score=28.13 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=56.4
Q ss_pred HHhhhcCcccccccchHHHHHHHH--HHHHHHHhccccchhhhhhhHHHHHHHHHHHhHHH----HHHHHHHHHHH-hhc
Q 008796 30 RVWESIDPNRRGQCLGLLFYNELL--HIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEI----QQLSSELDALN-QSL 102 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~c~~~~~~~~~~~ld~~~~~~~~~~~~~----~~l~~~~~~~~-~~~ 102 (553)
++=|.|....++.-.-|.==-+++ |+-=..+ ...+|+.||-++|.+++.-++-++.. |++.++-.+.+ ++.
T Consensus 479 e~~EQL~Esn~ele~DLreEld~~~g~~kel~~--r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~ 556 (1243)
T KOG0971|consen 479 EMNEQLQESNRELELDLREELDMAKGARKELQK--RVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQ 556 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhc
Confidence 444555555555555444333333 3322222 33578899999999998777766655 67777655554 445
Q ss_pred CCCCCChhhhhhhhhh-------HHHHHHHHHhcc
Q 008796 103 SRPDLPSRERSALAGR-------QAKLQQRLRSLE 130 (553)
Q Consensus 103 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 130 (553)
+.|+.. ++.-+-..+ -.-|..||+++|
T Consensus 557 q~~s~~-~et~dyk~~fa~skayaraie~QlrqiE 590 (1243)
T KOG0971|consen 557 QPPSVD-PETFDYKIKFAESKAYARAIEMQLRQIE 590 (1243)
T ss_pred CCCCCc-hhhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 555554 444333322 245788888855
No 401
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.47 E-value=1.4e+02 Score=19.56 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKN 267 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~ 267 (553)
.+.+..++...|+++.|.+.+.++.+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677788899999999999998875
No 402
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=23.40 E-value=1.8e+02 Score=23.97 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIR 271 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~ 271 (553)
+..|-.-|.-.=..|+|++|+..|.+|++.|-.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344555555566788999999999999888765
No 403
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=23.05 E-value=2.1e+02 Score=23.32 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIR 271 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~ 271 (553)
+..+-..|.-.=..|++++|+.+|.+|++.+..
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 333444555556678888888888888888776
No 404
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=22.94 E-value=2e+02 Score=23.40 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.|..+...|.-.-..|+|++|..+|.+|+....
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~ 37 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYLL 37 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 455566677777788999999999999998875
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=22.87 E-value=5.2e+02 Score=28.07 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=62.9
Q ss_pred HHHHHHhhHHhhhcCcccccccchHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 008796 22 LRSINQCDRVWESIDPNRRGQCLGLLFYNELLHIFYRLRICDYKNAAHHVDNLDAAMKADKQKMQEIQQLSSELDALNQS 101 (553)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ld~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (553)
..|....+++.++||++++ +-.|..|...|-.--.=||+.|.+.-+.+-...+...+..+.++++.+-++.+..-
T Consensus 148 ~aA~~~l~~l~~rl~~~~~-----~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 222 (379)
T PF09670_consen 148 GAAARILEELLRRLPGREE-----YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALESI 222 (379)
T ss_pred HHHHHHHHHHHHhCCchhh-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHhh
Confidence 4566777888888887776 67888999999999999999998888777666555335566677777777777776
Q ss_pred cCCCCCChhh
Q 008796 102 LSRPDLPSRE 111 (553)
Q Consensus 102 ~~~~~~~~~~ 111 (553)
++........
T Consensus 223 ~~~~~~~~~~ 232 (379)
T PF09670_consen 223 LSALEDKKQR 232 (379)
T ss_pred ccchhhhhcc
Confidence 6665554443
No 406
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.70 E-value=9e+02 Score=25.86 Aligned_cols=108 Identities=11% Similarity=0.029 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHH-------------------HHHHHHHHHCCChHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL-------------------TILGNLALALHDTVQA 421 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL-------------------~~LG~i~lalGd~~eA 421 (553)
-..+..+-..+.++..++.|.+.+-.+..-.. ....+.-.+... -+|+.+.-..+.....
T Consensus 26 hqm~RTl~fR~~~~K~~~~aieL~~~ga~~ff-k~~Q~~saaDl~~~~le~~eka~~ad~~~~~anl~~ll~e~~~~epe 104 (312)
T KOG3024|consen 26 HQMYRTLVFRYTRQKAHEDAIELLYDGALCFF-KLKQRGSAADLLVLVLEVLEKAEVADSLLKVANLAELLGEADPSEPE 104 (312)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhccCCCchhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhcCCCccH
Confidence 34455556666666666666666554443332 133222222222 2445554445544444
Q ss_pred H-HHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 422 R-EILRSSLTLAKKL-YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 422 ~-~~l~~AL~LArkl-gD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
+ .+++.|+.|+++. +.+.+-...+..||.....-+++.+|..+|-...
T Consensus 105 r~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~ 154 (312)
T KOG3024|consen 105 RKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLSE 154 (312)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcC
Confidence 4 6788999999997 4566777788899999999999999988875443
No 407
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.69 E-value=1.6e+02 Score=18.96 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=21.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKN 267 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~ 267 (553)
+.+..++...|++++|.+.+.++.+
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5567778999999999999998865
No 408
>CHL00132 psaF photosystem I subunit III; Validated
Probab=22.48 E-value=2.1e+02 Score=28.20 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhcccC-CCcccccccccc
Q 008796 86 QEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDS-SLTGKEFLEPSY 144 (553)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 144 (553)
+-+|.++++.+.|+..|+.+.-.+-.--+|.....+-|.|...--.+ -+||.|-|--+.
T Consensus 37 aF~kR~~~~~k~Le~rlk~Y~~~s~p~lal~~qi~~tk~RFe~Y~~~~lLCG~DGLPHLI 96 (185)
T CHL00132 37 AFQKRLNNSVKKLENRLAKYEANSPPALALQQQIDKTKARFDKYGRSGLLCGTDGLPHLI 96 (185)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHhcccccccCCCCCceee
Confidence 44578899999999999998877777778888888888888876665 388888877666
No 409
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=22.31 E-value=2.2e+02 Score=30.19 Aligned_cols=84 Identities=13% Similarity=-0.012 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 008796 374 QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 453 (553)
Q Consensus 374 qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~ 453 (553)
.-.+..|++++..||-++. .-||+...+.+-..-|-.|....+++-|..++..|+.+..+-.-+-.|..--.-|...+.
T Consensus 52 ~~~~~n~~e~~d~ALm~Ae-~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~k 130 (368)
T COG5091 52 DATMENAKELLDKALMTAE-GRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNK 130 (368)
T ss_pred ccChhhHHHHHHHHHHhhh-ccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhH
Confidence 3457889999999999995 799999999999999999999999999999999999996665556666666666666666
Q ss_pred HcCCc
Q 008796 454 QLGDR 458 (553)
Q Consensus 454 alGd~ 458 (553)
.+.+.
T Consensus 131 kQ~~~ 135 (368)
T COG5091 131 KQKDS 135 (368)
T ss_pred hhccc
Confidence 66554
No 410
>PLN00019 photosystem I reaction center subunit III; Provisional
Probab=22.30 E-value=1.7e+02 Score=29.59 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhcccCC-Ccccccccccc
Q 008796 86 QEIQQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSS-LTGKEFLEPSY 144 (553)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 144 (553)
+-+|.++++++.|+..|+.+.-.+.---+|.....+-|.|...--++. +||.|-|--+.
T Consensus 77 aF~kR~~~~~k~Le~rlkkY~~~s~palAl~~~i~~tk~RFe~Y~~agLLCG~DGLPHLI 136 (223)
T PLN00019 77 AFAKREKQEIKKLESRLKLYAPDSAPALALNATIEKTKRRFDNYGKAGLLCGADGLPHLI 136 (223)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCchhhhhhhchHHHHHHHHHhhhhccccCCCCCceee
Confidence 445788999999999999988877777888888888888888765543 78888777666
No 411
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=22.22 E-value=2.4e+02 Score=22.54 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALL 210 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~ 210 (553)
++-++-.++-....|++++|..+|..|++.....+.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 345666778888999999999999999999655444
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=21.76 E-value=7.1e+02 Score=23.75 Aligned_cols=57 Identities=11% Similarity=-0.058 Sum_probs=49.7
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 312 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~ 312 (553)
....+........+.+.+..+..|+ +.++..++.+....|+.++|.....++...+.
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~------~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPD------PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4677888888888999999999998 56788889999999999999999998888776
No 413
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=21.44 E-value=1.8e+02 Score=28.91 Aligned_cols=62 Identities=23% Similarity=0.166 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q 008796 380 ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ 454 (553)
Q Consensus 380 A~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~a 454 (553)
|+++|.+|..+.= ..|+ ..|.||-++...|+.-.|.=+|-+|+.. +.+- ..|..+|..++..
T Consensus 1 A~~~Y~~A~~l~P-~~G~------p~nQLAvl~~~~~~~l~avy~y~Rsl~~--~~Pf----~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLP-SNGN------PYNQLAVLASYQGDDLDAVYYYIRSLAV--RIPF----PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-T-TBSH------HHHHHHHHHHHTT-HHHHHHHHHHHHSS--SB------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCC-CCCC------cccchhhhhccccchHHHHHHHHHHHhc--CCCc----HHHHHHHHHHHHH
Confidence 7899999999973 5555 7889999999999999999999888843 3333 2234445554444
No 414
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=21.34 E-value=2.2e+02 Score=34.81 Aligned_cols=99 Identities=12% Similarity=-0.027 Sum_probs=61.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q 008796 368 GLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSV 447 (553)
Q Consensus 368 G~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~ 447 (553)
.-+.+....|+.|...|++--.= .-.|-.-=.+...+|-+.+..-....--+.+.+||.-+.++.+-++.=--+.+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRES----FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLG 557 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhc----CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHh
Confidence 34444445566666666543221 11111222466777777665433222237899999999999876654444444
Q ss_pred HHHHHHHcCCchHHHHHHHHHHH
Q 008796 448 LTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 448 Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
=+-+|...|++.++..++..+.+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 45589999999999998887764
No 415
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=20.51 E-value=2.2e+02 Score=23.11 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIR 271 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~ 271 (553)
+-..|.-.=..|+|++|+..|.+|++.+..
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344444445668888888888888888776
No 416
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=20.25 E-value=1.1e+03 Score=25.48 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008796 191 FKECMQRIQSGMQTIQDA 208 (553)
Q Consensus 191 ~dka~ky~ekAL~~~~~~ 208 (553)
.++|.+++++|--..+=.
T Consensus 137 ~K~A~~~fq~AAG~F~~l 154 (353)
T cd09243 137 AKDVHKSLRTAAGIFQFV 154 (353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677888888877665443
Done!