Query 008796
Match_columns 553
No_of_seqs 171 out of 192
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:54:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sf4_A G-protein-signaling mod 99.9 2.4E-23 8.2E-28 208.4 35.1 277 173-483 45-348 (406)
2 4a1s_A PINS, partner of inscut 99.9 1.8E-23 6.3E-28 212.1 34.5 278 173-484 84-385 (411)
3 3ro2_A PINS homolog, G-protein 99.9 2.6E-23 8.8E-28 200.4 33.7 270 173-476 41-337 (338)
4 3ulq_A Response regulator aspa 99.9 6.9E-23 2.4E-27 208.9 31.9 267 173-477 101-374 (383)
5 3sf4_A G-protein-signaling mod 99.9 5.7E-22 1.9E-26 198.4 34.6 267 175-477 9-302 (406)
6 3ro2_A PINS homolog, G-protein 99.9 7.3E-22 2.5E-26 190.1 34.1 271 174-480 4-301 (338)
7 4a1s_A PINS, partner of inscut 99.9 7.8E-22 2.7E-26 200.1 34.9 271 172-478 45-339 (411)
8 3q15_A PSP28, response regulat 99.9 1.8E-21 6.3E-26 198.7 31.4 266 173-477 99-371 (378)
9 3ulq_A Response regulator aspa 99.9 2.1E-19 7.2E-24 183.1 29.2 211 237-458 101-319 (383)
10 1hz4_A MALT regulatory protein 99.9 1.8E-18 6.2E-23 174.5 34.3 271 174-477 52-328 (373)
11 1hz4_A MALT regulatory protein 99.8 2.3E-18 7.8E-23 173.8 29.9 269 170-476 9-287 (373)
12 3q15_A PSP28, response regulat 99.8 8.7E-19 3E-23 178.9 25.8 219 237-467 99-328 (378)
13 3nf1_A KLC 1, kinesin light ch 99.8 3.4E-18 1.2E-22 164.7 28.4 230 238-472 26-308 (311)
14 2ifu_A Gamma-SNAP; membrane fu 99.8 1.2E-18 4E-23 174.5 25.0 209 250-469 2-222 (307)
15 3nf1_A KLC 1, kinesin light ch 99.8 1.5E-17 5.2E-22 160.1 27.6 231 173-433 25-309 (311)
16 3edt_B KLC 2, kinesin light ch 99.8 5E-18 1.7E-22 160.4 23.4 217 250-471 12-281 (283)
17 2ifu_A Gamma-SNAP; membrane fu 99.8 2.6E-18 9E-23 171.9 22.6 242 186-460 2-250 (307)
18 3gw4_A Uncharacterized protein 99.8 8.5E-18 2.9E-22 153.5 23.4 192 250-456 3-201 (203)
19 3edt_B KLC 2, kinesin light ch 99.8 3E-17 1E-21 155.1 23.8 218 184-431 10-281 (283)
20 1qqe_A Vesicular transport pro 99.8 6.4E-17 2.2E-21 160.7 24.8 212 241-463 39-261 (292)
21 3gw4_A Uncharacterized protein 99.8 1.4E-16 4.6E-21 145.4 24.4 181 292-483 3-188 (203)
22 4eqf_A PEX5-related protein; a 99.7 1.3E-16 4.6E-21 159.6 22.2 236 178-475 68-314 (365)
23 1qqe_A Vesicular transport pro 99.7 1.6E-16 5.5E-21 157.8 22.0 191 254-474 32-231 (292)
24 1fch_A Peroxisomal targeting s 99.7 5.2E-16 1.8E-20 154.1 25.2 237 179-473 68-361 (368)
25 3uq3_A Heat shock protein STI1 99.7 9.1E-15 3.1E-19 136.9 28.8 236 175-475 5-240 (258)
26 3u4t_A TPR repeat-containing p 99.7 6.4E-16 2.2E-20 147.3 20.0 240 178-471 6-250 (272)
27 4eqf_A PEX5-related protein; a 99.7 9.2E-16 3.1E-20 153.6 21.6 241 176-467 100-352 (365)
28 2qfc_A PLCR protein; TPR, HTH, 99.7 7.6E-15 2.6E-19 145.0 27.1 198 240-480 76-275 (293)
29 3hym_B Cell division cycle pro 99.7 1.5E-15 5.2E-20 147.4 20.4 200 241-471 92-299 (330)
30 3ro3_A PINS homolog, G-protein 99.7 3.6E-15 1.2E-19 128.5 20.6 153 315-475 6-162 (164)
31 3ieg_A DNAJ homolog subfamily 99.7 1.3E-14 4.6E-19 141.6 26.9 259 177-471 73-335 (359)
32 3hym_B Cell division cycle pro 99.7 3.9E-15 1.3E-19 144.5 22.9 233 179-472 26-266 (330)
33 1w3b_A UDP-N-acetylglucosamine 99.7 6E-15 2E-19 149.2 23.5 227 178-471 138-368 (388)
34 1w3b_A UDP-N-acetylglucosamine 99.7 6.4E-15 2.2E-19 149.0 23.3 243 176-470 68-333 (388)
35 3u3w_A Transcriptional activat 99.7 5.5E-15 1.9E-19 146.1 22.3 193 241-442 77-277 (293)
36 3cv0_A Peroxisome targeting si 99.7 1.3E-14 4.5E-19 140.6 24.2 238 177-472 23-316 (327)
37 3ro3_A PINS homolog, G-protein 99.7 1.2E-14 4E-19 125.3 20.9 157 238-437 8-164 (164)
38 1ouv_A Conserved hypothetical 99.7 5.8E-14 2E-18 135.7 27.9 216 177-471 8-251 (273)
39 2pl2_A Hypothetical conserved 99.6 3.5E-15 1.2E-19 141.9 16.4 191 241-469 7-212 (217)
40 2y4t_A DNAJ homolog subfamily 99.6 1.1E-13 3.9E-18 141.4 27.8 260 176-471 95-358 (450)
41 4b4t_Q 26S proteasome regulato 99.6 4.1E-14 1.4E-18 144.6 24.0 222 247-476 12-250 (434)
42 4b4t_Q 26S proteasome regulato 99.6 9.4E-14 3.2E-18 141.9 26.2 234 184-440 13-254 (434)
43 2xpi_A Anaphase-promoting comp 99.6 1.9E-13 6.4E-18 145.3 29.4 251 175-471 305-579 (597)
44 3u3w_A Transcriptional activat 99.6 6.5E-14 2.2E-18 138.4 24.0 185 286-478 80-273 (293)
45 3ieg_A DNAJ homolog subfamily 99.6 9.3E-14 3.2E-18 135.7 24.2 238 176-471 4-263 (359)
46 2y4t_A DNAJ homolog subfamily 99.6 2.1E-13 7.2E-18 139.4 27.6 243 168-471 19-286 (450)
47 4g1t_A Interferon-induced prot 99.6 8.6E-14 2.9E-18 143.8 24.9 264 177-471 53-363 (472)
48 2pl2_A Hypothetical conserved 99.6 2E-14 6.8E-19 136.7 17.0 191 177-429 7-212 (217)
49 3fp2_A TPR repeat-containing p 99.6 1.1E-13 3.7E-18 144.5 24.1 239 174-474 242-494 (537)
50 2qfc_A PLCR protein; TPR, HTH, 99.6 7.5E-14 2.6E-18 137.9 20.6 200 178-443 78-278 (293)
51 1fch_A Peroxisomal targeting s 99.6 1.8E-13 6.2E-18 135.8 23.4 214 176-436 99-364 (368)
52 2xpi_A Anaphase-promoting comp 99.6 1.3E-12 4.4E-17 138.9 30.7 209 240-471 306-545 (597)
53 2gw1_A Mitochondrial precursor 99.6 1.1E-13 3.7E-18 143.0 20.9 239 172-472 234-479 (514)
54 2gw1_A Mitochondrial precursor 99.6 2.3E-13 7.8E-18 140.6 21.6 249 175-471 186-444 (514)
55 2q7f_A YRRB protein; TPR, prot 99.5 9.3E-14 3.2E-18 129.5 16.2 201 170-431 18-222 (243)
56 3fp2_A TPR repeat-containing p 99.5 3.8E-13 1.3E-17 140.4 22.5 244 180-471 200-457 (537)
57 3uq3_A Heat shock protein STI1 99.5 1E-12 3.6E-17 122.8 23.1 213 177-451 40-256 (258)
58 4abn_A Tetratricopeptide repea 99.5 8.7E-14 3E-18 148.5 16.9 196 238-468 101-318 (474)
59 2q7f_A YRRB protein; TPR, prot 99.5 1.7E-13 5.8E-18 127.7 16.6 197 238-471 22-222 (243)
60 2ho1_A Type 4 fimbrial biogene 99.5 1E-12 3.4E-17 124.0 21.6 203 238-471 36-238 (252)
61 4gyw_A UDP-N-acetylglucosamine 99.5 1.8E-13 6.2E-18 155.1 18.6 168 238-472 8-175 (723)
62 2vq2_A PILW, putative fimbrial 99.5 2.8E-12 9.5E-17 117.4 23.1 198 239-470 8-210 (225)
63 3vtx_A MAMA; tetratricopeptide 99.5 8.9E-13 3E-17 119.6 19.5 161 241-432 7-171 (184)
64 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-12 4.5E-17 123.2 21.2 200 174-432 36-239 (252)
65 1ouv_A Conserved hypothetical 99.5 4E-12 1.4E-16 122.7 24.2 185 240-471 7-215 (273)
66 3u4t_A TPR repeat-containing p 99.5 4.9E-13 1.7E-17 127.3 16.5 202 241-476 5-213 (272)
67 3cv0_A Peroxisome targeting si 99.5 6.1E-12 2.1E-16 121.8 23.9 215 176-437 56-321 (327)
68 3vtx_A MAMA; tetratricopeptide 99.5 3.2E-12 1.1E-16 115.9 20.3 162 281-471 5-170 (184)
69 2vq2_A PILW, putative fimbrial 99.5 9.9E-12 3.4E-16 113.7 23.5 200 174-431 7-211 (225)
70 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.2E-12 7.6E-17 122.3 19.2 225 186-471 16-244 (275)
71 2h6f_A Protein farnesyltransfe 99.4 2.8E-12 9.6E-17 134.6 20.0 215 174-456 96-323 (382)
72 4i17_A Hypothetical protein; T 99.4 2.9E-12 1E-16 120.4 17.7 157 241-418 9-169 (228)
73 4g1t_A Interferon-induced prot 99.4 3.7E-12 1.3E-16 131.5 20.0 208 238-471 50-276 (472)
74 3qky_A Outer membrane assembly 99.4 3.8E-12 1.3E-16 122.6 18.6 209 240-461 16-251 (261)
75 4gyw_A UDP-N-acetylglucosamine 99.4 6.6E-12 2.3E-16 142.3 19.0 169 175-434 9-177 (723)
76 4i17_A Hypothetical protein; T 99.4 2E-11 6.9E-16 114.6 18.7 157 281-458 7-169 (228)
77 4abn_A Tetratricopeptide repea 99.4 7.9E-12 2.7E-16 133.4 17.1 193 175-426 102-316 (474)
78 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.4E-10 4.7E-15 109.9 22.1 225 173-465 41-269 (275)
79 2h6f_A Protein farnesyltransfe 99.3 2.2E-11 7.6E-16 127.7 18.2 193 239-468 97-302 (382)
80 3as5_A MAMA; tetratricopeptide 99.3 5.7E-11 2E-15 104.8 16.4 165 238-433 7-175 (186)
81 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.3E-15 102.0 17.5 164 280-472 7-174 (186)
82 3mkr_A Coatomer subunit epsilo 99.3 5E-10 1.7E-14 111.9 23.1 192 240-469 66-262 (291)
83 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.9E-10 1E-14 107.9 20.1 194 241-469 6-211 (225)
84 2xm6_A Protein corresponding t 99.3 1.1E-09 3.8E-14 115.7 26.1 188 242-472 222-433 (490)
85 3qky_A Outer membrane assembly 99.3 3.4E-10 1.2E-14 108.8 20.2 174 280-470 14-223 (261)
86 2xm6_A Protein corresponding t 99.3 8.8E-10 3E-14 116.5 24.8 175 188-429 56-250 (490)
87 3mkr_A Coatomer subunit epsilo 99.2 1.3E-09 4.4E-14 108.9 23.0 194 177-432 67-265 (291)
88 3n71_A Histone lysine methyltr 99.2 2.9E-10 9.8E-15 123.6 19.0 152 242-432 312-465 (490)
89 2pzi_A Probable serine/threoni 99.2 1.5E-10 5.2E-15 129.3 17.1 197 186-436 402-603 (681)
90 3n71_A Histone lysine methyltr 99.2 4.7E-10 1.6E-14 121.9 19.7 131 337-472 332-465 (490)
91 3urz_A Uncharacterized protein 99.2 4.5E-10 1.5E-14 105.8 16.3 178 178-391 7-187 (208)
92 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.6E-09 1.2E-13 100.4 22.1 189 177-430 6-212 (225)
93 3rjv_A Putative SEL1 repeat pr 99.2 1.1E-09 3.8E-14 103.8 17.5 180 256-471 3-197 (212)
94 2pzi_A Probable serine/threoni 99.1 1.4E-10 4.6E-15 129.7 12.1 191 250-475 402-602 (681)
95 4gcn_A Protein STI-1; structur 99.1 1.8E-09 6.3E-14 94.4 16.0 106 280-431 7-112 (127)
96 4ga2_A E3 SUMO-protein ligase 99.1 2.3E-10 7.7E-15 102.9 9.1 147 244-457 2-149 (150)
97 4gcn_A Protein STI-1; structur 99.1 1.9E-09 6.6E-14 94.3 14.8 106 359-471 6-112 (127)
98 3urz_A Uncharacterized protein 99.1 2E-09 6.8E-14 101.3 15.5 166 242-431 7-186 (208)
99 2ond_A Cleavage stimulation fa 99.1 1E-08 3.5E-13 101.9 21.0 188 255-473 80-272 (308)
100 3qou_A Protein YBBN; thioredox 99.1 1.6E-09 5.6E-14 107.4 14.9 162 241-431 119-284 (287)
101 2vsy_A XCC0866; transferase, g 99.0 1.6E-09 5.4E-14 116.9 15.2 152 252-434 2-160 (568)
102 1hh8_A P67PHOX, NCF-2, neutrop 99.0 4.1E-09 1.4E-13 97.1 15.4 136 239-432 6-151 (213)
103 2r5s_A Uncharacterized protein 99.0 2.3E-09 7.9E-14 97.7 13.1 160 242-431 9-173 (176)
104 3qou_A Protein YBBN; thioredox 99.0 3E-08 1E-12 98.3 19.1 168 281-471 117-284 (287)
105 1a17_A Serine/threonine protei 99.0 1.7E-08 5.7E-13 88.3 15.3 141 238-437 12-152 (166)
106 1hh8_A P67PHOX, NCF-2, neutrop 98.9 9.2E-09 3.1E-13 94.7 14.0 138 317-473 5-152 (213)
107 3e4b_A ALGK; tetratricopeptide 98.9 8.4E-10 2.9E-14 117.0 7.6 221 181-470 9-279 (452)
108 2vsy_A XCC0866; transferase, g 98.9 7.3E-09 2.5E-13 111.7 14.9 150 188-391 2-158 (568)
109 3rjv_A Putative SEL1 repeat pr 98.9 1.1E-07 3.7E-12 90.0 20.6 159 242-431 21-197 (212)
110 3e4b_A ALGK; tetratricopeptide 98.9 2E-08 6.8E-13 106.4 17.0 185 242-470 179-386 (452)
111 1a17_A Serine/threonine protei 98.9 5E-08 1.7E-12 85.3 16.5 140 280-476 12-151 (166)
112 2fo7_A Synthetic consensus TPR 98.9 5.5E-08 1.9E-12 80.5 15.9 127 282-431 2-132 (136)
113 2ond_A Cleavage stimulation fa 98.9 3.2E-08 1.1E-12 98.3 16.3 180 256-470 33-231 (308)
114 2fo7_A Synthetic consensus TPR 98.9 7.1E-08 2.4E-12 79.8 15.4 126 242-391 4-133 (136)
115 4f3v_A ESX-1 secretion system 98.9 2.7E-08 9.1E-13 101.2 14.6 194 251-472 18-238 (282)
116 4ga2_A E3 SUMO-protein ligase 98.8 8.7E-09 3E-13 92.5 9.8 98 360-470 30-128 (150)
117 3upv_A Heat shock protein STI1 98.8 9.3E-08 3.2E-12 81.5 15.8 120 281-453 4-123 (126)
118 4gco_A Protein STI-1; structur 98.8 2.7E-08 9.1E-13 87.1 12.5 99 360-471 12-110 (126)
119 3qww_A SET and MYND domain-con 98.8 4.7E-08 1.6E-12 104.6 16.0 104 372-475 309-415 (433)
120 2hr2_A Hypothetical protein; a 98.8 1.3E-07 4.4E-12 88.5 16.5 117 238-393 10-134 (159)
121 2r5s_A Uncharacterized protein 98.8 8.4E-08 2.9E-12 87.3 14.4 164 283-470 8-172 (176)
122 3qww_A SET and MYND domain-con 98.8 7E-08 2.4E-12 103.3 15.8 89 360-448 339-430 (433)
123 1p5q_A FKBP52, FK506-binding p 98.8 9.1E-08 3.1E-12 97.4 15.9 170 252-473 126-296 (336)
124 3qwp_A SET and MYND domain-con 98.8 1.3E-07 4.4E-12 100.9 17.6 96 360-455 328-426 (429)
125 1xi4_A Clathrin heavy chain; a 98.8 4.6E-07 1.6E-11 108.4 23.9 259 182-499 1056-1345(1630)
126 3rkv_A Putative peptidylprolyl 98.8 8.3E-08 2.8E-12 85.7 13.3 106 359-471 9-126 (162)
127 2hr2_A Hypothetical protein; a 98.8 1.7E-07 5.9E-12 87.7 15.7 114 359-473 9-133 (159)
128 4gco_A Protein STI-1; structur 98.7 1.6E-07 5.5E-12 82.1 13.8 96 280-391 12-111 (126)
129 1elr_A TPR2A-domain of HOP; HO 98.7 2.4E-07 8.3E-12 76.9 14.2 105 360-471 3-108 (131)
130 2fbn_A 70 kDa peptidylprolyl i 98.7 2E-08 6.8E-13 92.8 8.2 167 280-462 3-176 (198)
131 3qwp_A SET and MYND domain-con 98.7 9.4E-08 3.2E-12 102.0 14.5 119 292-415 298-426 (429)
132 3upv_A Heat shock protein STI1 98.7 1.3E-07 4.3E-12 80.6 12.5 101 360-473 3-103 (126)
133 3gyz_A Chaperone protein IPGC; 98.7 6.4E-08 2.2E-12 88.5 11.1 101 360-473 35-135 (151)
134 1elr_A TPR2A-domain of HOP; HO 98.7 4.3E-07 1.5E-11 75.4 14.9 123 281-456 4-126 (131)
135 3sz7_A HSC70 cochaperone (SGT) 98.7 4E-07 1.4E-11 81.4 15.0 100 238-391 10-109 (164)
136 1p5q_A FKBP52, FK506-binding p 98.7 1.6E-07 5.6E-12 95.5 13.8 132 293-472 125-260 (336)
137 2fbn_A 70 kDa peptidylprolyl i 98.7 1.5E-07 5E-12 86.9 12.0 132 238-422 37-176 (198)
138 3rkv_A Putative peptidylprolyl 98.7 3.1E-07 1.1E-11 82.0 13.5 100 279-391 9-127 (162)
139 3sz7_A HSC70 cochaperone (SGT) 98.6 2.4E-07 8.2E-12 82.9 12.6 101 359-472 9-109 (164)
140 2ooe_A Cleavage stimulation fa 98.6 1.2E-06 4.2E-11 93.3 20.3 190 252-473 292-494 (530)
141 3gyz_A Chaperone protein IPGC; 98.6 7.2E-07 2.5E-11 81.4 15.0 103 175-315 36-138 (151)
142 2vyi_A SGTA protein; chaperone 98.6 9.8E-07 3.4E-11 73.0 14.5 120 280-458 11-130 (131)
143 2lni_A Stress-induced-phosphop 98.6 4.5E-07 1.5E-11 75.9 12.5 124 169-333 10-133 (133)
144 2c2l_A CHIP, carboxy terminus 98.6 1.4E-07 4.7E-12 93.4 9.5 96 281-392 4-103 (281)
145 2xcb_A PCRH, regulatory protei 98.6 1.1E-06 3.8E-11 77.1 14.4 100 239-392 18-117 (142)
146 2vgx_A Chaperone SYCD; alterna 98.6 5.6E-07 1.9E-11 80.7 12.2 101 360-473 20-120 (148)
147 3q49_B STIP1 homology and U bo 98.5 8.8E-07 3E-11 75.5 12.7 102 360-474 8-109 (137)
148 2e2e_A Formate-dependent nitri 98.5 3E-07 1E-11 82.7 10.2 121 250-431 21-144 (177)
149 3q49_B STIP1 homology and U bo 98.5 1E-06 3.4E-11 75.2 13.0 101 281-434 9-109 (137)
150 2vgx_A Chaperone SYCD; alterna 98.5 8.8E-07 3E-11 79.4 13.1 99 239-391 21-119 (148)
151 2vyi_A SGTA protein; chaperone 98.5 2.2E-06 7.6E-11 70.8 14.5 123 171-334 8-130 (131)
152 2lni_A Stress-induced-phosphop 98.5 9.6E-07 3.3E-11 73.9 12.3 116 279-417 14-133 (133)
153 2xcb_A PCRH, regulatory protei 98.5 8.7E-07 3E-11 77.8 12.2 101 360-473 17-117 (142)
154 2l6j_A TPR repeat-containing p 98.5 1.7E-07 5.9E-12 76.8 6.7 98 360-464 3-100 (111)
155 1na0_A Designed protein CTPR3; 98.5 3.4E-06 1.2E-10 69.1 14.4 81 362-455 44-124 (125)
156 2xev_A YBGF; tetratricopeptide 98.5 1.6E-06 5.6E-11 73.0 12.5 104 362-472 3-106 (129)
157 4f3v_A ESX-1 secretion system 98.5 4.8E-06 1.6E-10 84.6 18.0 209 185-431 16-237 (282)
158 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1E-06 3.5E-11 93.6 13.4 143 252-422 247-405 (457)
159 1ihg_A Cyclophilin 40; ppiase 98.5 1.4E-06 4.7E-11 90.5 13.9 133 238-423 222-362 (370)
160 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-06 4.8E-11 70.9 10.8 99 360-471 3-101 (118)
161 2ooe_A Cleavage stimulation fa 98.4 3.3E-06 1.1E-10 90.0 16.4 180 256-471 255-454 (530)
162 1hxi_A PEX5, peroxisome target 98.4 7.9E-07 2.7E-11 77.0 9.1 97 362-471 18-114 (121)
163 2xev_A YBGF; tetratricopeptide 98.4 3.5E-06 1.2E-10 70.9 12.8 99 283-391 4-106 (129)
164 1b89_A Protein (clathrin heavy 98.4 6E-07 2E-11 96.7 9.9 211 243-501 36-274 (449)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.3E-06 4.5E-11 92.8 11.9 155 293-463 246-406 (457)
166 2dba_A Smooth muscle cell asso 98.4 3.3E-06 1.1E-10 72.1 12.2 102 360-471 27-128 (148)
167 2dba_A Smooth muscle cell asso 98.4 4.2E-06 1.4E-10 71.4 12.9 99 280-391 27-129 (148)
168 1na0_A Designed protein CTPR3; 98.4 4.3E-06 1.5E-10 68.5 12.2 99 360-471 8-106 (125)
169 1hxi_A PEX5, peroxisome target 98.3 1.7E-06 5.8E-11 74.8 9.4 96 242-391 20-115 (121)
170 1ihg_A Cyclophilin 40; ppiase 98.3 3.6E-06 1.2E-10 87.4 13.3 106 359-471 221-336 (370)
171 1wao_1 Serine/threonine protei 98.3 2.4E-07 8.1E-12 99.4 4.1 123 281-426 6-134 (477)
172 3ma5_A Tetratricopeptide repea 98.3 4.7E-06 1.6E-10 69.4 11.1 79 360-445 6-84 (100)
173 1wao_1 Serine/threonine protei 98.3 2.1E-07 7.1E-12 99.8 3.5 185 240-448 7-231 (477)
174 1elw_A TPR1-domain of HOP; HOP 98.3 6.2E-06 2.1E-10 67.0 11.4 98 240-391 5-102 (118)
175 2if4_A ATFKBP42; FKBP-like, al 98.3 1.3E-06 4.5E-11 89.0 8.6 149 280-470 178-327 (338)
176 2kck_A TPR repeat; tetratricop 98.3 8.3E-07 2.8E-11 71.8 5.6 99 361-470 6-105 (112)
177 3k9i_A BH0479 protein; putativ 98.2 3.8E-06 1.3E-10 71.2 8.3 86 293-391 2-91 (117)
178 2c2l_A CHIP, carboxy terminus 98.2 4.6E-06 1.6E-10 82.4 10.2 101 360-473 3-103 (281)
179 1xi4_A Clathrin heavy chain; a 98.2 0.0001 3.5E-09 88.6 22.9 228 176-464 1106-1377(1630)
180 2e2e_A Formate-dependent nitri 98.2 1.5E-05 5.1E-10 71.5 12.2 99 361-472 44-145 (177)
181 2l6j_A TPR repeat-containing p 98.1 8.1E-06 2.8E-10 66.7 8.8 90 239-336 4-96 (111)
182 1na3_A Designed protein CTPR2; 98.1 1.6E-05 5.3E-10 62.7 10.1 84 360-456 8-91 (91)
183 2kat_A Uncharacterized protein 98.1 2.1E-05 7.3E-10 65.8 11.0 81 361-448 19-99 (115)
184 3k9i_A BH0479 protein; putativ 98.1 6.3E-06 2.1E-10 69.8 7.2 90 373-472 2-91 (117)
185 2kck_A TPR repeat; tetratricop 98.0 1.3E-05 4.4E-10 64.7 8.0 92 242-342 9-101 (112)
186 2if4_A ATFKBP42; FKBP-like, al 98.0 8.8E-06 3E-10 82.9 8.4 142 238-391 178-329 (338)
187 1na3_A Designed protein CTPR2; 98.0 4.3E-05 1.5E-09 60.1 10.1 83 239-332 9-91 (91)
188 3dra_A Protein farnesyltransfe 97.9 0.0021 7.3E-08 65.5 23.1 238 174-475 34-291 (306)
189 2kat_A Uncharacterized protein 97.9 7.7E-05 2.6E-09 62.3 10.2 39 361-400 53-91 (115)
190 1b89_A Protein (clathrin heavy 97.8 4.1E-05 1.4E-09 82.5 9.1 144 283-469 124-267 (449)
191 3ma5_A Tetratricopeptide repea 97.8 0.00022 7.7E-09 59.0 11.8 81 281-408 7-87 (100)
192 3mv2_B Coatomer subunit epsilo 97.7 0.0008 2.7E-08 69.2 16.5 172 243-431 104-282 (310)
193 1klx_A Cysteine rich protein B 97.7 0.00019 6.7E-09 63.5 9.8 111 252-390 8-126 (138)
194 1klx_A Cysteine rich protein B 97.6 0.00031 1.1E-08 62.2 10.5 110 295-431 9-126 (138)
195 3txn_A 26S proteasome regulato 97.5 0.013 4.4E-07 62.1 23.0 188 282-477 20-216 (394)
196 3mv2_B Coatomer subunit epsilo 97.5 0.007 2.4E-07 62.1 19.6 187 281-494 100-292 (310)
197 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00071 2.4E-08 57.1 10.1 71 361-431 5-75 (104)
198 1zu2_A Mitochondrial import re 97.5 0.00011 3.8E-09 68.5 5.4 98 251-391 14-121 (158)
199 1zu2_A Mitochondrial import re 97.3 0.00023 8E-09 66.4 5.5 87 189-313 16-123 (158)
200 3ly7_A Transcriptional activat 97.3 0.014 4.8E-07 61.3 19.4 141 270-431 188-339 (372)
201 3txn_A 26S proteasome regulato 97.1 0.12 4E-06 54.8 24.6 191 238-438 18-217 (394)
202 2kc7_A BFR218_protein; tetratr 97.1 0.0013 4.5E-08 52.9 7.2 61 365-432 4-65 (99)
203 3q7a_A Farnesyltransferase alp 96.8 0.024 8.2E-07 59.0 15.7 254 169-478 50-338 (349)
204 2kc7_A BFR218_protein; tetratr 96.8 0.0068 2.3E-07 48.6 9.1 62 244-313 5-67 (99)
205 3ly7_A Transcriptional activat 96.7 0.025 8.6E-07 59.4 15.5 143 316-472 194-340 (372)
206 2v5f_A Prolyl 4-hydroxylase su 96.7 0.022 7.5E-07 47.7 12.1 80 242-325 8-87 (104)
207 4b4t_P 26S proteasome regulato 96.7 0.36 1.2E-05 51.3 24.3 220 251-476 28-252 (445)
208 4b4t_P 26S proteasome regulato 96.6 0.55 1.9E-05 49.9 25.1 190 241-440 58-256 (445)
209 3ffl_A Anaphase-promoting comp 96.5 0.032 1.1E-06 52.4 13.1 107 360-466 19-146 (167)
210 3u64_A Protein TP_0956; tetrat 96.5 0.18 6.3E-06 51.4 19.2 136 315-470 117-268 (301)
211 3bee_A Putative YFRE protein; 96.3 0.01 3.6E-07 49.6 7.3 68 360-434 5-75 (93)
212 3dss_A Geranylgeranyl transfer 96.2 0.52 1.8E-05 48.5 21.2 186 238-454 70-284 (331)
213 3dra_A Protein farnesyltransfe 96.2 0.31 1.1E-05 49.4 19.2 184 243-463 36-241 (306)
214 4e6h_A MRNA 3'-END-processing 95.9 0.55 1.9E-05 52.8 21.4 194 249-472 353-571 (679)
215 1dce_A Protein (RAB geranylger 95.9 0.32 1.1E-05 53.2 18.9 137 255-418 89-242 (567)
216 3u64_A Protein TP_0956; tetrat 95.7 0.13 4.4E-06 52.6 13.7 69 360-434 198-272 (301)
217 1pc2_A Mitochondria fission pr 95.7 0.056 1.9E-06 50.0 10.0 87 297-390 14-100 (152)
218 1dce_A Protein (RAB geranylger 95.4 0.16 5.4E-06 55.7 14.3 176 246-458 35-242 (567)
219 4e6h_A MRNA 3'-END-processing 95.4 2.1 7.3E-05 48.0 23.6 171 244-433 383-572 (679)
220 3ffl_A Anaphase-promoting comp 94.8 0.23 7.8E-06 46.6 11.3 90 356-453 58-166 (167)
221 3bee_A Putative YFRE protein; 94.7 0.11 3.8E-06 43.2 8.2 78 241-326 8-88 (93)
222 3mkq_A Coatomer beta'-subunit; 94.1 2 6.8E-05 47.0 18.7 177 186-418 610-799 (814)
223 4g26_A Pentatricopeptide repea 93.3 2.7 9.1E-05 45.2 17.8 163 242-427 29-200 (501)
224 4g26_A Pentatricopeptide repea 93.3 5.5 0.00019 42.7 20.1 161 183-389 34-203 (501)
225 3mkq_A Coatomer beta'-subunit; 93.0 9.2 0.00032 41.6 21.7 96 250-387 610-707 (814)
226 3dss_A Geranylgeranyl transfer 93.0 1.7 5.9E-05 44.6 14.9 160 241-431 31-222 (331)
227 1pc2_A Mitochondria fission pr 92.6 0.45 1.6E-05 43.9 8.9 67 360-431 31-100 (152)
228 3q7a_A Farnesyltransferase alp 92.5 2 6.8E-05 44.5 14.7 153 252-431 67-237 (349)
229 1nzn_A CGI-135 protein, fissio 92.4 0.93 3.2E-05 40.5 10.5 87 297-390 17-103 (126)
230 3mkq_B Coatomer subunit alpha; 90.1 3.2 0.00011 39.2 12.0 100 249-386 15-114 (177)
231 4b4t_R RPN7, 26S proteasome re 89.8 0.7 2.4E-05 48.7 8.2 105 360-468 130-234 (429)
232 4b4t_R RPN7, 26S proteasome re 88.6 5.2 0.00018 42.0 13.8 123 259-391 110-238 (429)
233 2ff4_A Probable regulatory pro 88.2 3.5 0.00012 42.8 12.0 108 364-477 118-241 (388)
234 4b4t_S RPN3, 26S proteasome re 87.7 13 0.00044 40.6 16.4 204 250-460 147-379 (523)
235 3o48_A Mitochondria fission 1 86.1 1.9 6.4E-05 39.1 7.3 74 318-399 40-113 (134)
236 2uy1_A Cleavage stimulation fa 85.6 37 0.0013 36.0 18.6 184 255-468 195-380 (493)
237 1y8m_A FIS1; mitochondria, unk 85.0 2.6 8.9E-05 38.6 7.8 75 317-399 38-112 (144)
238 2ff4_A Probable regulatory pro 81.9 15 0.00052 37.9 13.3 97 291-397 125-241 (388)
239 3mkq_B Coatomer subunit alpha; 76.5 16 0.00055 34.3 10.3 84 362-471 35-118 (177)
240 4h7y_A Dual specificity protei 71.2 20 0.00067 33.3 9.2 82 337-431 42-123 (161)
241 4h7y_A Dual specificity protei 69.4 44 0.0015 31.0 11.1 90 192-312 36-125 (161)
242 1ya0_A SMG-7 transcript varian 67.8 10 0.00034 41.1 7.6 79 240-329 153-231 (497)
243 4ady_A RPN2, 26S proteasome re 65.4 80 0.0027 37.0 14.8 205 238-469 375-587 (963)
244 2ijq_A Hypothetical protein; s 64.9 11 0.00036 35.1 6.1 74 363-437 34-110 (161)
245 1ya0_A SMG-7 transcript varian 63.3 15 0.00052 39.7 7.9 62 362-430 153-214 (497)
246 4b4t_S RPN3, 26S proteasome re 61.2 1.9E+02 0.0065 31.5 19.6 224 172-423 133-382 (523)
247 3lpz_A GET4 (YOR164C homolog); 59.0 71 0.0024 32.9 11.6 101 364-466 58-160 (336)
248 2cwy_A Hypothetical protein TT 56.4 20 0.00067 30.1 5.8 71 365-438 5-75 (94)
249 2wpv_A GET4, UPF0363 protein Y 55.3 56 0.0019 33.2 10.1 127 337-465 29-157 (312)
250 1nzn_A CGI-135 protein, fissio 55.3 69 0.0023 28.3 9.4 79 360-447 34-115 (126)
251 4b4t_O 26S proteasome regulato 54.0 2E+02 0.0069 29.6 15.2 69 244-312 132-200 (393)
252 4fhn_B Nucleoporin NUP120; pro 49.2 59 0.002 38.3 10.4 151 166-335 836-988 (1139)
253 4fhn_B Nucleoporin NUP120; pro 48.6 72 0.0025 37.6 11.0 103 363-466 844-962 (1139)
254 1zb1_A BRO1 protein; AIP1, BRO 45.2 2.7E+02 0.0093 28.6 18.9 125 89-226 46-177 (392)
255 1y8m_A FIS1; mitochondria, unk 41.7 1.7E+02 0.0057 26.6 9.8 65 242-310 42-106 (144)
256 4b4t_O 26S proteasome regulato 39.9 1.8E+02 0.0061 29.9 11.3 102 370-471 85-198 (393)
257 2w2u_A Hypothetical P60 katani 39.8 40 0.0014 27.6 5.0 37 356-392 14-50 (83)
258 3o48_A Mitochondria fission 1 38.7 1.7E+02 0.0057 26.2 9.3 65 242-310 43-107 (134)
259 3t5x_A PCI domain-containing p 37.8 97 0.0033 29.1 8.1 57 278-334 11-69 (203)
260 4gq2_M Nucleoporin NUP120; bet 37.7 1.4E+02 0.0049 34.5 11.0 93 363-456 842-950 (950)
261 2lw1_A ABC transporter ATP-bin 36.2 37 0.0013 27.9 4.3 44 86-129 29-75 (89)
262 2uy1_A Cleavage stimulation fa 36.2 4E+02 0.014 27.9 21.5 96 362-474 320-416 (493)
263 3c3r_A Programmed cell death 6 35.9 3.7E+02 0.013 27.5 15.2 141 238-392 141-306 (380)
264 2xs1_A Programmed cell death 6 35.7 5E+02 0.017 28.9 15.7 141 238-392 126-291 (704)
265 2rpa_A Katanin P60 ATPase-cont 33.8 27 0.00093 28.5 3.0 36 180-215 17-52 (78)
266 4gns_B Protein CSD3, chitin bi 33.4 3.2E+02 0.011 31.0 12.8 122 283-427 251-396 (754)
267 3r9m_A BRO1 domain-containing 32.5 4.2E+02 0.014 27.0 15.2 142 238-392 113-284 (376)
268 2v6y_A AAA family ATPase, P60 31.9 78 0.0027 25.7 5.5 34 359-392 9-42 (83)
269 2crb_A Nuclear receptor bindin 31.3 73 0.0025 27.1 5.2 35 358-392 12-46 (97)
270 2o8p_A 14-3-3 domain containin 31.0 3.4E+02 0.011 26.3 10.7 74 373-446 137-216 (227)
271 3ni0_A Bone marrow stromal ant 29.2 68 0.0023 27.2 4.7 35 69-103 46-84 (99)
272 4a5x_A MITD1, MIT domain-conta 29.0 88 0.003 25.6 5.4 34 238-271 15-48 (86)
273 2v6x_A Vacuolar protein sortin 28.2 1.1E+02 0.0038 24.5 5.9 36 357-392 9-44 (85)
274 2ijq_A Hypothetical protein; s 27.2 1.1E+02 0.0037 28.2 6.2 67 247-313 40-107 (161)
275 3spa_A Mtrpol, DNA-directed RN 27.2 5.2E+02 0.018 30.8 13.2 89 238-334 126-216 (1134)
276 3rau_A Tyrosine-protein phosph 25.9 5.4E+02 0.018 26.2 18.0 33 191-226 142-174 (363)
277 2cpt_A SKD1 protein, vacuolar 25.7 96 0.0033 26.9 5.3 36 357-392 14-49 (117)
278 4a5x_A MITD1, MIT domain-conta 25.5 1.1E+02 0.0036 25.1 5.3 33 360-392 15-47 (86)
279 1wfd_A Hypothetical protein 15 25.2 1.3E+02 0.0043 24.9 5.8 37 356-392 10-46 (93)
280 4gq2_M Nucleoporin NUP120; bet 25.1 1.6E+02 0.0055 34.0 8.6 108 284-416 843-950 (950)
281 3ax2_A Mitochondrial import re 25.0 97 0.0033 24.9 4.8 31 285-315 21-51 (73)
282 3ax2_A Mitochondrial import re 24.8 45 0.0016 26.9 2.8 27 365-391 21-47 (73)
283 3t5x_A PCI domain-containing p 24.7 1.3E+02 0.0046 28.1 6.6 94 238-345 13-106 (203)
284 3mq7_A Bone marrow stromal ant 24.1 90 0.0031 27.5 4.7 36 68-103 52-88 (121)
285 3iqu_A 14-3-3 protein sigma; s 24.0 2.4E+02 0.0081 27.5 8.3 57 378-434 150-208 (236)
286 2crb_A Nuclear receptor bindin 23.9 1.6E+02 0.0054 25.0 6.0 37 398-434 11-47 (97)
287 1om2_A Protein (mitochondrial 23.7 73 0.0025 27.0 4.0 27 365-391 24-50 (95)
288 2cpt_A SKD1 protein, vacuolar 23.0 1.1E+02 0.0038 26.5 5.2 34 238-271 17-50 (117)
289 2v6x_A Vacuolar protein sortin 22.8 1.3E+02 0.0043 24.2 5.2 33 239-271 13-45 (85)
290 3ubw_A 14-3-3E, 14-3-3 protein 22.6 2.6E+02 0.0089 27.7 8.4 55 378-432 173-229 (261)
291 3t5v_B Nuclear mRNA export pro 22.0 7.2E+02 0.025 26.3 15.3 160 164-333 102-280 (455)
292 2npm_A 14-3-3 domain containin 22.0 5.8E+02 0.02 25.1 11.1 55 256-310 173-227 (260)
293 3uzd_A 14-3-3 protein gamma; s 21.9 2.8E+02 0.0095 27.3 8.4 55 378-432 148-204 (248)
294 2cwy_A Hypothetical protein TT 20.7 1.8E+02 0.0061 24.1 5.8 56 250-309 12-67 (94)
295 1om2_A Protein (mitochondrial 20.2 1.3E+02 0.0045 25.4 4.9 31 285-315 24-54 (95)
No 1
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=2.4e-23 Score=208.41 Aligned_cols=277 Identities=15% Similarity=0.072 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008796 173 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 252 (553)
Q Consensus 173 ~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~ 252 (553)
..+.++...+.++...|++++|.+++++++.. .++.++.+. .+..+.++|.++..+
T Consensus 45 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 45 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----ARTIGDQLG--------------------EAKASGNLGNTLKVL 100 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHTTCHHH--------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----HHhccccHH--------------------HHHHHHHHHHHHHHc
Confidence 45567777788888999999999999999999 666554333 456678999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHcc
Q 008796 253 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC--------------------YSEAAFHYVEAAKITE 312 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~--------------------yeeAl~~f~~AL~l~~ 312 (553)
|++++|++.+.++++++...++. ...+.++..+|.++...|+ +++|..+|.+|+++..
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDK--VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998884 5568899999999999999 9999999999998764
Q ss_pred c---hhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008796 313 S---KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLA 385 (553)
Q Consensus 313 d---~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~ 385 (553)
. ....+.++.++|.+|...|++++ +.+++.+....+ .....+.+++++|.++..+|++++|..++.
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------DKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3 56788999999999999999987 888888877763 334578899999999999999999999999
Q ss_pred HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 386 KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 386 eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
+++++.. ..++....+.++..+|.++...|++++|..++++|+.+..+.++......++..+|.+|...|++++|.+++
T Consensus 252 ~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 252 KTLLLAR-QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHH-hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHhh
Q 008796 466 EYRRKKLDELQKRLADAY 483 (553)
Q Consensus 466 e~a~~~~d~L~~~~~~A~ 483 (553)
+.+.....+++.....+.
T Consensus 331 ~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCcchhH
Confidence 999999988865554433
No 2
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=1.8e-23 Score=212.07 Aligned_cols=278 Identities=15% Similarity=0.097 Sum_probs=247.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008796 173 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 252 (553)
Q Consensus 173 ~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~ 252 (553)
..+.++...+.++...|++++|.++++++++. .++.++.+. .+..+.++|.++..+
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 84 TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL----AKSMNDRLG--------------------EAKSSGNLGNTLKVM 139 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HHHTTCHHH--------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----HHHccCchH--------------------HHHHHHHHHHHHHHC
Confidence 44556777777888899999999999999999 566554332 566788999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHHcc---
Q 008796 253 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC-----------------YSEAAFHYVEAAKITE--- 312 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~-----------------yeeAl~~f~~AL~l~~--- 312 (553)
|++++|++++.+++++++..++. ...+.++..+|.++..+|+ +++|..+|.+|+++..
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDR--LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998873 4568899999999999999 9999999999998764
Q ss_pred chhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 313 SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 313 d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL 388 (553)
+....+.++.++|.+|...|++++ +.+++.+....+ .....+.+++++|.++..+|++++|..++++++
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG-------DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456788999999999999999987 888888877653 334478899999999999999999999999999
Q ss_pred HHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 008796 389 QIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 468 (553)
Q Consensus 389 ~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a 468 (553)
++.. ..++....+.++..+|.++...|++++|..++++|+.++.+.++......++..||.+|...|++++|.++++.+
T Consensus 291 ~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 291 ALAV-ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHH-HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9985 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHhhc
Q 008796 469 RKKLDELQKRLADAYS 484 (553)
Q Consensus 469 ~~~~d~L~~~~~~A~~ 484 (553)
..+.++++.+...+..
T Consensus 370 l~~~~~~~~~~~~~~~ 385 (411)
T 4a1s_A 370 LQLAXXXXXXXXXXXX 385 (411)
T ss_dssp HHHCCHHHHHHHHHHH
T ss_pred HHHHhhcccchhhhhh
Confidence 9999998888776653
No 3
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=2.6e-23 Score=200.36 Aligned_cols=270 Identities=16% Similarity=0.069 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008796 173 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 252 (553)
Q Consensus 173 ~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~ 252 (553)
..+.++...+.++...|++++|.+++++++.. ..+.++.+. .+.++.++|.++...
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 41 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----ARTIGDQLG--------------------EAKASGNLGNTLKVL 96 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHHTCHHH--------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----hhcccccHH--------------------HHHHHHHHHHHHHHc
Confidence 44566777788888999999999999999999 555544333 456678999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHcc
Q 008796 253 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC--------------------YSEAAFHYVEAAKITE 312 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~--------------------yeeAl~~f~~AL~l~~ 312 (553)
|++++|++.+.++++++.+.++. ...+.++..+|.++..+|+ +++|..+|.+++.+..
T Consensus 97 g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELNDK--VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999884 4468899999999999999 9999999999988664
Q ss_pred c---hhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008796 313 S---KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLA 385 (553)
Q Consensus 313 d---~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~ 385 (553)
. ....+.++.++|.+|...|++++ +.+++.+....+ .....+.++..+|.++...|++++|..+++
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------DKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 56678899999999999999987 888888877653 334478899999999999999999999999
Q ss_pred HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 386 KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 386 eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
+++++.. ..++....+.++..+|.++...|++++|..++++|+.+..+.++......++..||.+|...|++++|.+++
T Consensus 248 ~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 248 KTLLLAR-QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHH-hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999985 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 008796 466 EYRRKKLDELQ 476 (553)
Q Consensus 466 e~a~~~~d~L~ 476 (553)
+.+..+.++++
T Consensus 327 ~~a~~~~~~~~ 337 (338)
T 3ro2_A 327 EKHLEISREVG 337 (338)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHhhc
Confidence 99999887764
No 4
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=6.9e-23 Score=208.87 Aligned_cols=267 Identities=9% Similarity=0.017 Sum_probs=236.2
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008796 173 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 252 (553)
Q Consensus 173 ~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~ 252 (553)
+...+++..+.++...|++++|.+++++|++. ..+.++... .+.++.++|.++..+
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~a~~~~~lg~~~~~~ 156 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESK----LIFVKDRIE--------------------KAEFFFKMSESYYYM 156 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----GGGCCCHHH--------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----HhhCCCHHH--------------------HHHHHHHHHHHHHHc
Confidence 34556777899999999999999999999998 555543332 566789999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHH
Q 008796 253 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYF 329 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~---d~~g~A~aL~NLA~vyl 329 (553)
|++++|++++.+|++++...++. ....+.+++++|.++..+|+|++|..+|.+|+++.. +....+.++.|+|.+|.
T Consensus 157 ~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 157 KQTYFSMDYARQAYEIYKEHEAY-NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSTT-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999872 345788999999999999999999999999999764 46678899999999999
Q ss_pred HhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHH
Q 008796 330 CIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 405 (553)
Q Consensus 330 ~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL 405 (553)
..|++++ +.+|+++.+..++. ...+.+++++|.++..+|++++|..++++|++++. ..+++...+. +
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~-~ 306 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNIL-------PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ-KAGDVIYLSE-F 306 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCG-------GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHH-H
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccc-------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HcCCHHHHHH-H
Confidence 9999987 88999998877432 23689999999999999999999999999999995 7999877776 7
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Q 008796 406 TILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 406 ~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~ 477 (553)
..||.++...|++ ..+.+|+.++++.++.+....++..||.+|...|++++|.++++.+....+++..
T Consensus 307 ~~l~~~~~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 307 EFLKSLYLSGPDE----EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHHHHTSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHhCCCcH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8899999999998 7889999999999999999999999999999999999999999999998887654
No 5
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=5.7e-22 Score=198.42 Aligned_cols=267 Identities=16% Similarity=0.080 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
+.+++..+..+...|++++|..+++++++. .+.. . .. .+.++..+|.++...|+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------~~~~--------~-~~--------~~~~~~~l~~~~~~~g~ 62 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV---------GTED--------L-KT--------LSAIYSQLGNAYFYLHD 62 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CCSC--------H-HH--------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc---------Cccc--------H-HH--------HHHHHHHHHHHHHHhcC
Confidence 556778888899999999999999999987 1111 1 11 45667899999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~A~aL~NLA~vyl~~ 331 (553)
+++|++.+.+|+++++..++. ...+.++..+|.++..+|++++|..+|.+|+++... ....+.++.++|.+|...
T Consensus 63 ~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 63 YAKALEYHHHDLTLARTIGDQ--LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 999999999999999998873 456889999999999999999999999999997644 556889999999999999
Q ss_pred CC--------------------hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008796 332 GD--------------------AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 387 (553)
Q Consensus 332 Gd--------------------~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eA 387 (553)
|+ ++. +.+++.+....+ +....+.+++++|.++..+|++++|..++.++
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG-------DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99 776 778888877763 33447899999999999999999999999999
Q ss_pred HHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 008796 388 LQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 467 (553)
Q Consensus 388 L~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~ 467 (553)
+++.. ..++....+.++..+|.++...|++.+|..++++|+.+..+.++......++..+|.+|...|++++|.++++.
T Consensus 214 l~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 214 LLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH-hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 99985 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 008796 468 RRKKLDELQK 477 (553)
Q Consensus 468 a~~~~d~L~~ 477 (553)
+.........
T Consensus 293 a~~~~~~~~~ 302 (406)
T 3sf4_A 293 HLAIAQELND 302 (406)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 9998877643
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=7.3e-22 Score=190.15 Aligned_cols=271 Identities=16% Similarity=0.088 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 174 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 174 ~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
-+...++.+..+...|++++|..+++++++. .+.. +.. .+.++..+|.++...|
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------~~~~---------~~~--------~~~~~~~l~~~~~~~g 57 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQV---------GTED---------LKT--------LSAIYSQLGNAYFYLH 57 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CCSC---------HHH--------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh---------Cccc---------HHH--------HHHHHHHHHHHHHHcC
Confidence 3456677788899999999999999999987 1111 111 4566789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHH
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFC 330 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~A~aL~NLA~vyl~ 330 (553)
++++|++.+.+++++++..++. ...+.++..+|.++..+|++++|..+|.+|+++... ....+.++.++|.+|..
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 58 DYAKALEYHHHDLTLARTIGDQ--LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccccc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 9999999999999999998873 456889999999999999999999999999997644 55678899999999999
Q ss_pred hCC--------------------hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 331 IGD--------------------AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK 386 (553)
Q Consensus 331 ~Gd--------------------~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~e 386 (553)
.|+ ++. +.+++.+..... .....+.++.++|.++..+|++++|..++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG-------DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999 665 677777766653 3344788999999999999999999999999
Q ss_pred HHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 008796 387 GLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDE 466 (553)
Q Consensus 387 AL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e 466 (553)
++++.. ..++....+.++..+|.++...|++++|..++++++.+..+.++......++..+|.+|...|++++|.++++
T Consensus 209 a~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (338)
T 3ro2_A 209 RLLIAK-EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 287 (338)
T ss_dssp HHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHH-hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999985 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHH
Q 008796 467 YRRKKLDELQKRLA 480 (553)
Q Consensus 467 ~a~~~~d~L~~~~~ 480 (553)
.+............
T Consensus 288 ~a~~~~~~~~~~~~ 301 (338)
T 3ro2_A 288 KHLAIAQELKDRIG 301 (338)
T ss_dssp HHHHHHHHHTCHHH
T ss_pred HHHHHHHhcCCcHH
Confidence 99999887765433
No 7
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=7.8e-22 Score=200.06 Aligned_cols=271 Identities=15% Similarity=0.072 Sum_probs=237.9
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008796 172 AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 251 (553)
Q Consensus 172 ~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~ 251 (553)
...+..++..+..+...|++++|+++++++++. .... +.. .+.++.++|.++..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---------~~~~---------~~~--------~~~~~~~lg~~~~~ 98 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA---------GTED---------LRT--------LSAIYSQLGNAYFY 98 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CCSC---------HHH--------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---------cccC---------hhH--------HHHHHHHHHHHHHH
Confidence 345556667788888999999999999999987 1111 111 45567899999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHH
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSY 328 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~A~aL~NLA~vy 328 (553)
.|++++|++.+.+++++++..++. ...+.++..+|.++..+|++++|..+|.+|+++... ....+.++.++|.+|
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDR--LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 999999999999999999998873 557889999999999999999999999999997644 567889999999999
Q ss_pred HHhCC-----------------hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008796 329 FCIGD-----------------AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 387 (553)
Q Consensus 329 l~~Gd-----------------~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eA 387 (553)
...|+ ++. +.+++++....+ .....+.+++++|.++..+|++++|..+++++
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG-------DRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999 665 777777776663 33447889999999999999999999999999
Q ss_pred HHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 008796 388 LQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEY 467 (553)
Q Consensus 388 L~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~ 467 (553)
+++.. ..++....+.++..+|.++...|++.+|..++++|+.+..+.++......++..+|.+|...|++++|.++++.
T Consensus 250 l~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 250 LRIAR-EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHH-HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH-hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99985 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhH
Q 008796 468 RRKKLDELQKR 478 (553)
Q Consensus 468 a~~~~d~L~~~ 478 (553)
+.........+
T Consensus 329 al~~~~~~~~~ 339 (411)
T 4a1s_A 329 HLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHTCH
T ss_pred HHHHHHHCCCh
Confidence 99998877543
No 8
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.90 E-value=1.8e-21 Score=198.72 Aligned_cols=266 Identities=11% Similarity=-0.005 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008796 173 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 252 (553)
Q Consensus 173 ~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~ 252 (553)
+-...++..++++...|++++|..++++|+.. ..+.++.+. .+.++.++|.++..+
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~a~~~~~lg~~y~~~ 154 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKE----LPFVSDDIE--------------------KAEFHFKVAEAYYHM 154 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----GGGCCCHHH--------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----HhhCCChHH--------------------HHHHHHHHHHHHHHc
Confidence 34456778899999999999999999999998 555443322 566789999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHH
Q 008796 253 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYF 329 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~---d~~g~A~aL~NLA~vyl 329 (553)
|++++|+.++.+|++++...++. ....+.+++++|.++..+|+|++|..+|.+|+++.. +....+.++.|+|.+|.
T Consensus 155 ~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 155 KQTHVSMYHILQALDIYQNHPLY-SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHTSTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998872 235788999999999999999999999999999775 46678999999999999
Q ss_pred HhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHH
Q 008796 330 CIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 405 (553)
Q Consensus 330 ~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL 405 (553)
..|++++ +.+|+++.+..+++ . .+.+++++|.++..+|++++|..++++|++++. +.+++.... .+
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~~-------~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~-~~ 303 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVPD-------L-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT-ARSHKFYKE-LF 303 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCGG-------G-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-TTCCSCHHH-HH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCCh-------h-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HcCCHHHHH-HH
Confidence 9999987 88999988876322 2 388999999999999999999999999999984 788866665 57
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Q 008796 406 TILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 406 ~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~ 477 (553)
..|+.++...|+. ..+.+|+...++.++.+....+...||.+|...|++++|.++++.+....+++..
T Consensus 304 ~~l~~ly~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 304 LFLQAVYKETVDE----RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHHSSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcH----HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999986 6788889999999999989999999999999999999999999999999988765
No 9
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.86 E-value=2.1e-19 Score=183.12 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---
Q 008796 237 LLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--- 313 (553)
Q Consensus 237 L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d--- 313 (553)
+...++..+|.++...|+|++|++.+.+|+++++..|+. ...+.++..+|.++..+|++++|..+|.+|+++...
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDR--IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 355567789999999999999999999999999999884 457889999999999999999999999999998755
Q ss_pred -hhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 314 -KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 314 -~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL 388 (553)
....+.+++++|.+|...|++++ +.+|+++....+ +....+.+++++|.++..+|++++|..++++|+
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45688999999999999999997 889999988773 334589999999999999999999999999999
Q ss_pred HHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCc
Q 008796 389 QIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR 458 (553)
Q Consensus 389 ~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~ 458 (553)
++.. ..++....+.++.+||.++..+|++++|..++++|+.++++.+|+..... +..||.+|...|++
T Consensus 252 ~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 252 AVFE-ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHH-HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCH
T ss_pred HHHH-hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcH
Confidence 9985 68886777999999999999999999999999999999999999988877 77899999999994
No 10
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=1.8e-18 Score=174.48 Aligned_cols=271 Identities=13% Similarity=0.027 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 174 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 174 ~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
.+.++...+..+...|++++|.+++++++.. ..+.|+... .+..+.++|.++..+|
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~--------------------~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQM----ARQHDVWHY--------------------ALWSLIQQSEILFAQG 107 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HHHTTCHHH--------------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----HHhcCcHHH--------------------HHHHHHHHHHHHHHCC
Confidence 3445556667778899999999999999999 565543322 5667889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch--hhHHHHHHHHHHHHHHh
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--SMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~--~g~A~aL~NLA~vyl~~ 331 (553)
++++|++.++++++++++.++......+.++.++|.++...|++++|..+|.+|+++.... ...+.++.++|.++...
T Consensus 108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 187 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence 9999999999999999987763223467789999999999999999999999999987652 23668899999999999
Q ss_pred CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHH
Q 008796 332 GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTI 407 (553)
Q Consensus 332 Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~ 407 (553)
|++++ +.+++.+....+.. ....+......+.++..+|++++|...+++++.+. .++......++..
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGKYH------SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE---FANNHFLQGQWRN 258 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC---CTTCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCcc------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC---CCcchhhHHHHHH
Confidence 99987 77777776554211 11123333456677889999999999999998764 2222333346789
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh
Q 008796 408 LGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 408 LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~ 477 (553)
+|.++...|++.+|.+.+++++..+.+.+++.....++..++.++...|++++|.+.++.+.......+.
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~ 328 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 328 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccH
Confidence 9999999999999999999999999999998888889999999999999999999999999998876543
No 11
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.83 E-value=2.3e-18 Score=173.78 Aligned_cols=269 Identities=10% Similarity=-0.014 Sum_probs=217.2
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008796 170 KSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVE 249 (553)
Q Consensus 170 ~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~ 249 (553)
.+.+.+.+.++.+......|++++|..++++++.. . ..+ .+. ..+..+.++|.++
T Consensus 9 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~-----~~~--------~~~--------~~~~~~~~l~~~~ 63 (373)
T 1hz4_A 9 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE----L-----PPG--------WFY--------SRIVATSVLGEVL 63 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----C-----CTT--------CHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----C-----CCC--------chh--------HHHHHHHHHHHHH
Confidence 35566777788888888999999999999999886 2 111 001 1556788999999
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch-----hhHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-----SMQAMCHAYA 324 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~-----~g~A~aL~NL 324 (553)
..+|++++|.+.+.+++++.++.++. ...+.++..+|.++...|++++|..+|.+|+++.... ...+.++.++
T Consensus 64 ~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 64 HCKGELTRSLALMQQTEQMARQHDVW--HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 99999999999999999999999884 4567889999999999999999999999999987542 4578899999
Q ss_pred HHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh-H
Q 008796 325 AVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL-Q 399 (553)
Q Consensus 325 A~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr-~ 399 (553)
|.+|...|++++ +.+++++....++. ..+.++.++|.++..+|++++|..++++++.+.. ..+++ .
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~-~~~~~~~ 212 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQ--------QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG-NGKYHSD 212 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGG--------GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSCCCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-ccCcchh
Confidence 999999999987 88888887766321 1567899999999999999999999999999974 55553 2
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Q 008796 400 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 476 (553)
Q Consensus 400 leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~ 476 (553)
..+.....++.++...|++++|...+++++.... ++......++..+++++...|++++|.+.++.+.......+
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~ 287 (373)
T 1hz4_A 213 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF--ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 287 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC--TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 3333334566779999999999999999986432 12122233568899999999999999999999988877644
No 12
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=8.7e-19 Score=178.87 Aligned_cols=219 Identities=14% Similarity=-0.002 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---
Q 008796 237 LLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES--- 313 (553)
Q Consensus 237 L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d--- 313 (553)
+....+..+|..+...|+|++|+.++.+|++++...++. ...+.++..+|.++..+|++++|..+|.+|+++...
T Consensus 99 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD--IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 355567889999999999999999999999999999884 557889999999999999999999999999998865
Q ss_pred -hhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 314 -KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 314 -~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL 388 (553)
....+.+++++|.+|...|++++ +.+|+++.+..+ +....+.+++++|.++..+|++++|..++.+|+
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ-------NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34689999999999999999987 889999988773 334588999999999999999999999999999
Q ss_pred HHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC---chHHHHHH
Q 008796 389 QIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD---RGNEMEND 465 (553)
Q Consensus 389 ~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd---~~~A~e~~ 465 (553)
++.. ..+++.. +.++..||.++..+|++++|..++++|+.++++.++..... .+..|+.+|...|+ ..+|.+.+
T Consensus 250 ~~~~-~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 250 KVSR-EKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE-LFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHH-HHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHH-hhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9985 6888777 99999999999999999999999999999999999977766 46899999999998 55555554
Q ss_pred HH
Q 008796 466 EY 467 (553)
Q Consensus 466 e~ 467 (553)
+.
T Consensus 327 ~~ 328 (378)
T 3q15_A 327 EK 328 (378)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 13
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.4e-18 Score=164.71 Aligned_cols=230 Identities=18% Similarity=0.100 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-----c
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-----E 312 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~-----~ 312 (553)
.+..+.++|.++...|++++|++.+.++++++.+.+.......+.++..+|.++...|++++|..+|.+|++.. .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 45677899999999999999999999999999986411124467899999999999999999999999999987 4
Q ss_pred chhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 313 SKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGL 388 (553)
Q Consensus 313 d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL 388 (553)
+....+.++.++|.+|...|++++ +.+++.+....... .....+.+++++|.++...|++++|..++++++
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-----DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457788999999999999999887 78888877554211 112368899999999999999999999999999
Q ss_pred HHHHHhc-cChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC-------------------------------
Q 008796 389 QIAHNHM-GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY------------------------------- 436 (553)
Q Consensus 389 ~Lar~el-Gdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg------------------------------- 436 (553)
++..+.. ++....+.++..||.++...|++++|..++++++.++.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 9985322 44677889999999999999999999999999999876632
Q ss_pred ------------ChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 437 ------------DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 437 ------------D~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
+.+....++..||.+|...|++++|.++++.+.++.
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 557788899999999999999999999999988764
No 14
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.82 E-value=1.2e-18 Score=174.46 Aligned_cols=209 Identities=11% Similarity=0.015 Sum_probs=185.4
Q ss_pred HhhCCHHHHHHHHHHHHHHHHH-----CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---chhhHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIR-----FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCH 321 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~-----~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~---d~~g~A~aL 321 (553)
+.+|++.+|.+.+++|...... .|+ .......+...|.++...|++++|..+|.+|+++.. +....+.++
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~ 79 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPD--YDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAF 79 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578999999999999987653 244 233456777789999999999999999999999764 466789999
Q ss_pred HHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 322 AYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
.++|.+|...|++++ +.+|+++....+ .....+.+++++|.++.. |++++|+.+|++|+++.. ..|+
T Consensus 80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~-~~~~ 150 (307)
T 2ifu_A 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENG-------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE-NEER 150 (307)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH-hCCC
Confidence 999999999999987 999999988774 334578999999999999 999999999999999985 7899
Q ss_pred hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 398 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 398 r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
....+.++++||.++..+|++.+|+.++++|+.+..+.++.+....++..+|.++...|++++|..+++.+.
T Consensus 151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999988889999999999999999999999999887
No 15
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.5e-17 Score=160.13 Aligned_cols=231 Identities=15% Similarity=0.049 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008796 173 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 252 (553)
Q Consensus 173 ~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~ 252 (553)
-.+-++...+..+...|++++|.++++++++. ..+.+..+. . . .+..+.++|.++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~--------~-~---------~~~~~~~la~~~~~~ 82 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALED----LEKTSGHDH--------P-D---------VATMLNILALVYRDQ 82 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHHHCSSS--------H-H---------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHcCCCC--------H-H---------HHHHHHHHHHHHHHC
Confidence 44556777778888999999999999999999 454442212 0 0 456678899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHC--CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-----cchhhHHHHHHHHH
Q 008796 253 SGFVEAQEALVQMKNWFIRF--PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-----ESKSMQAMCHAYAA 325 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~--~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~-----~d~~g~A~aL~NLA 325 (553)
|++++|++.+.++++++++. ++ ....+.++..+|.++..+|++++|..+|.+++++. .+....+.++.++|
T Consensus 83 g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 83 NKYKDAANLLNDALAIREKTLGKD--HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99999999999999999886 44 24467899999999999999999999999999987 44577889999999
Q ss_pred HHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-----
Q 008796 326 VSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG----- 396 (553)
Q Consensus 326 ~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG----- 396 (553)
.+|...|++++ +.+++.+....... .....+.+++.+|.++..+|++++|..++++++++.. +.+
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~ 234 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGP-----DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH-EREFGSVD 234 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCT-----TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHC---
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhcCCCCC
Confidence 99999999887 78888876654211 1233678999999999999999999999999999864 221
Q ss_pred --------------------------------------ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 008796 397 --------------------------------------NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 433 (553)
Q Consensus 397 --------------------------------------dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LAr 433 (553)
+....+.++..||.++...|++++|..++++|+.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 3467788999999999999999999999999999864
No 16
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=5e-18 Score=160.44 Aligned_cols=217 Identities=18% Similarity=0.078 Sum_probs=185.4
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-----cchhhHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT-----ESKSMQAMCHAYA 324 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~-----~d~~g~A~aL~NL 324 (553)
...|++++|++.+++|++++++.........+.++..+|.++..+|++++|..+|.+|++.. .+....+.++.++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 67899999999999999999985321124467899999999999999999999999999987 4457789999999
Q ss_pred HHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-ChH
Q 008796 325 AVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQ 399 (553)
Q Consensus 325 A~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG-dr~ 399 (553)
|.+|...|++++ +.+|+.+..+.++.. ....+.+++++|.++..+|++++|..++++++++..+..+ +..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKF-----HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 999999999987 888998887664321 1236889999999999999999999999999999754333 356
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC-------------------------------------------
Q 008796 400 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY------------------------------------------- 436 (553)
Q Consensus 400 leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg------------------------------------------- 436 (553)
..+.++..||.++...|++++|..++++++.+..+.+
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 7789999999999999999999999999999976632
Q ss_pred ChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 437 DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 437 D~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+.+....++..||.+|...|++++|...++.+.+.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55778889999999999999999999999887653
No 17
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.80 E-value=2.6e-18 Score=171.91 Aligned_cols=242 Identities=18% Similarity=0.070 Sum_probs=195.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 008796 186 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 265 (553)
Q Consensus 186 ~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qA 265 (553)
+..|++++|.+++++|... ..+ +...- .++. . . -+..++..+.++..+|++++|+..+.+|
T Consensus 2 ~~~~~~~eA~~~~~~a~k~----~~~-~~~~~--~~~~--~-~---------A~~~~~~a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKY----LKT-SFMKW--KPDY--D-S---------AASEYAKAAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHH----HCC-CSSSC--SCCH--H-H---------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHH----ccc-cccCC--CCCH--H-H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4568899999999999887 221 22110 1111 0 0 2233566788899999999999999999
Q ss_pred HHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHhCChHH----HH
Q 008796 266 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAVSYFCIGDAES----SS 338 (553)
Q Consensus 266 L~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~---d~~g~A~aL~NLA~vyl~~Gd~e~----~~ 338 (553)
++++.+.++. ...+.++..+|.++..+|++++|..+|.+|+++.. +....+.++.++|.+|.. |++++ +.
T Consensus 63 l~~~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 63 AEAHANNRSL--FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHTTCH--HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHcCCH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 9999999884 56788999999999999999999999999999864 455788999999999998 99987 89
Q ss_pred HHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCCh
Q 008796 339 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 418 (553)
Q Consensus 339 qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~ 418 (553)
+|+++....+ .....+.+++++|.++..+|+|++|..+|++++++.. +.++....+.++..+|.++..+|++
T Consensus 140 ~Al~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 140 QAAAVFENEE-------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK-EMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp HHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCC-------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHHHcCCH
Confidence 9999988763 3334789999999999999999999999999999985 6888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchH
Q 008796 419 VQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGN 460 (553)
Q Consensus 419 ~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~ 460 (553)
.+|..++++++ +.....+ ..+...+..|+..+ ..|+.+.
T Consensus 212 ~~A~~~~~~al-~~p~~~~-~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 212 VAAQKCVRESY-SIPGFSG-SEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHT-TSTTSTT-SHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHh-CCCCCCC-CHHHHHHHHHHHHH-HhcCHHH
Confidence 99999999999 6544433 34566677777777 4676543
No 18
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.80 E-value=8.5e-18 Score=153.45 Aligned_cols=192 Identities=12% Similarity=0.122 Sum_probs=163.4
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---chhhHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQAMCHAYAAV 326 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~---d~~g~A~aL~NLA~ 326 (553)
+..|+|++|.+.+... ...|. ..+.++..+|.++...|++++|..+|.+|++++. +....+.++.++|.
T Consensus 3 ~~~g~~~~A~~~~~~~----~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQAL----LAHPA----TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHH----HTSTT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHh----cCChH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5689999998854332 33443 3578999999999999999999999999999776 46678999999999
Q ss_pred HHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHH
Q 008796 327 SYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 402 (553)
Q Consensus 327 vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA 402 (553)
+|...|++++ +.+|+++.+..++. ....+.+++++|.++..+|++++|..++++++++.. ..+++...+
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~ 147 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPED------PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ-QADDQVAIA 147 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCcc------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hccchHHHH
Confidence 9999999987 88999998876422 234789999999999999999999999999999985 799999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q 008796 403 QYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 456 (553)
Q Consensus 403 ~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alG 456 (553)
.++.+||.++...|++++|.+++++|+.++++.+|+..++.++..++.+....|
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhhccc
Confidence 999999999999999999999999999999999999999999999987755444
No 19
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=3e-17 Score=155.10 Aligned_cols=218 Identities=15% Similarity=0.031 Sum_probs=179.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 008796 184 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 263 (553)
Q Consensus 184 ~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~ 263 (553)
.+...|++++|+.++++|++.. .+....+. +. .+.++.++|.++..+|++++|++.+.
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~-------~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~ 67 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDL----EKTSGHDH-------PD-----------VATMLNILALVYRDQNKYKEAAHLLN 67 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHH----HHHHCSSS-------HH-----------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHH----HHhcCCCC-------HH-----------HHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3456899999999999999994 44332221 01 45667899999999999999999999
Q ss_pred HHHHHHHHC--CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----hhhHHHHHHHHHHHHHHhCChHH
Q 008796 264 QMKNWFIRF--PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-----KSMQAMCHAYAAVSYFCIGDAES 336 (553)
Q Consensus 264 qAL~L~r~~--~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-----~~g~A~aL~NLA~vyl~~Gd~e~ 336 (553)
++++++++. ++ ....+.++..+|.++..+|++++|..+|.+|+++... ....+.++.++|.+|...|++++
T Consensus 68 ~al~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 145 (283)
T 3edt_B 68 DALAIREKTLGKD--HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145 (283)
T ss_dssp HHHHHHHHHTCTT--CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHcCCc--chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 999999886 44 2446789999999999999999999999999998643 35778999999999999999987
Q ss_pred ----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc----------------
Q 008796 337 ----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG---------------- 396 (553)
Q Consensus 337 ----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG---------------- 396 (553)
+.+++.+....... +....+.++.++|.++..+|++++|..++++++++... .+
T Consensus 146 A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 219 (283)
T 3edt_B 146 VEYYYRRALEIYATRLGP-----DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE-KEFGSVNGDNKPIWMHAE 219 (283)
T ss_dssp HHHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HHSSSCCSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hcCCCcchhHHHHHHHHH
Confidence 88888886654211 12236889999999999999999999999999999642 21
Q ss_pred ---------------------------ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 397 ---------------------------NLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 397 ---------------------------dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
+....+.++..||.++...|++++|..++++|+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 220 EREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44677889999999999999999999999999875
No 20
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.77 E-value=6.4e-17 Score=160.74 Aligned_cols=212 Identities=12% Similarity=-0.029 Sum_probs=170.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---chhhH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---SKSMQ 317 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~---d~~g~ 317 (553)
.++..|.++..+|+|++|++.+.+|++++.+.++. ...+.+++++|.++..+|++++|..+|.+|+++.. +..+.
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE--DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34556778899999999999999999999999883 55788999999999999999999999999999774 45677
Q ss_pred HHHHHHHHHHHHHh-CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCI-GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 318 A~aL~NLA~vyl~~-Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
+.++.++|.+|... |++++ +.+|+++....+ .....+.+++++|.++..+|+|++|..+|++++++..
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ-------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 89999999999996 99997 999999887653 2233578999999999999999999999999999963
Q ss_pred HhccCh-HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH--HcCCchHHHH
Q 008796 393 NHMGNL-QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ--QLGDRGNEME 463 (553)
Q Consensus 393 ~elGdr-~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~--alGd~~~A~e 463 (553)
..+.. ...+.++.++|.++..+|++.+|..++++++.+....++. .+...+..|+..+. ..+++.+|..
T Consensus 190 -~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~~~l~~l~~~~~~~~~~~~~~A~~ 261 (292)
T 1qqe_A 190 -GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS-RESNFLKSLIDAVNEGDSEQLSEHCK 261 (292)
T ss_dssp -SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred -cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45553 4778899999999999999999999999999987766643 34456777777774 2333444443
No 21
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.77 E-value=1.4e-16 Score=145.42 Aligned_cols=181 Identities=14% Similarity=0.034 Sum_probs=160.3
Q ss_pred HHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHH
Q 008796 292 HSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAY 367 (553)
Q Consensus 292 ~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~L 367 (553)
...|+|++|...++.. .+++...+.++.++|.+|...|++++ +.+|+++.+..+ .....+.+++++
T Consensus 3 ~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQAL---LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG-------DHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHH---HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC-------CcHHHHHHHHHH
Confidence 4579999999955422 34666889999999999999999987 889999998874 334478999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcc-ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 008796 368 GLLLMRQQDFQEARNRLAKGLQIAHNHMG-NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALS 446 (553)
Q Consensus 368 G~~~~~qGr~~EA~~~L~eAL~Lar~elG-dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~ 446 (553)
|.++..+|++++|..++++++++++ ..+ ++...+.++++||.++...|++++|..++++|+.++++.++....+.++.
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999999999999999999996 788 56689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhHHHHhh
Q 008796 447 VLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAY 483 (553)
Q Consensus 447 ~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~~~~~A~ 483 (553)
.||.++...|++++|.++++.+....++.+.+...+.
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 188 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNE 188 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999888876654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.3e-16 Score=159.64 Aligned_cols=236 Identities=13% Similarity=0.001 Sum_probs=182.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q 008796 178 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 257 (553)
Q Consensus 178 ~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ae 257 (553)
++..+..+...|++++|.++++++++. .+. ....+.++|.++...|++++
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~--------------------~~~~~~~lg~~~~~~g~~~~ 117 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQ----------DPG--------------------DAEAWQFLGITQAENENEQA 117 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcC--------------------CHHHHHHHHHHHHHCCCHHH
Confidence 445566777889999999999999987 122 12346788999999999999
Q ss_pred HHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh-------hHHHHHHHHHHHHHH
Q 008796 258 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS-------MQAMCHAYAAVSYFC 330 (553)
Q Consensus 258 Al~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~-------g~A~aL~NLA~vyl~ 330 (553)
|++.+.+++++ .|+ -+.++..+|.++..+|++++|...|.+++++..+.. +.+....++|.+|..
T Consensus 118 A~~~~~~al~~---~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 118 AIVALQRCLEL---QPN-----NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp HHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C
T ss_pred HHHHHHHHHhc---CCC-----CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh
Confidence 99999999987 344 255889999999999999999999999998764422 346667888999999
Q ss_pred hCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHH
Q 008796 331 IGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 406 (553)
Q Consensus 331 ~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~ 406 (553)
.|++++ +.+++.+.... . .+.+++++|.++..+|++++|+.+|++++++.. . .+.+++
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~----~~~~~~ 251 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDM-------I----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---E----DYSLWN 251 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSS-------C----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---T----CHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCc-------c----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---C----CHHHHH
Confidence 998886 66666653221 0 356889999999999999999999999999842 1 256899
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Q 008796 407 ILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 475 (553)
Q Consensus 407 ~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L 475 (553)
.||.++...|++.+|..++++++.+. +....++..||.+|...|++++|.+.++.+.......
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTRALEIQ------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999873 2226688999999999999999999999999887653
No 23
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=1.6e-16 Score=157.82 Aligned_cols=191 Identities=13% Similarity=0.015 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---cchhhHHHHHHHHHHHHHH
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKIT---ESKSMQAMCHAYAAVSYFC 330 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~---~d~~g~A~aL~NLA~vyl~ 330 (553)
++++|+..+.+|. .++...|+|++|..+|.+|+++. +++.+.+.+++|+|.+|..
T Consensus 32 ~~~~A~~~~~~a~----------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQAA----------------------TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHHH----------------------HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 5888988888883 34456899999999999999976 5567789999999999999
Q ss_pred hCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhccChHhHHHHH
Q 008796 331 IGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ-QDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 405 (553)
Q Consensus 331 ~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~q-Gr~~EA~~~L~eAL~Lar~elGdr~leA~aL 405 (553)
.|++++ +.+|+.+....+ ...+.+.+++++|.++..+ |++++|..+|++|+++.. ..++....+.++
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g-------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~-~~~~~~~~~~~~ 161 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRG-------QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA-QDQSVALSNKCF 161 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hCCChHHHHHHH
Confidence 999997 899999987773 4445789999999999996 999999999999999985 688888889999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 406 TILGNLALALHDTVQAREILRSSLTLAKKLYDI-PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 406 ~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~-~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
+++|.++..+|++.+|..++++++.+..+.++. .....++..+|.+|...|++++|..+++.+..+..+
T Consensus 162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999988776664 466778899999999999999999999988764443
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=5.2e-16 Score=154.11 Aligned_cols=237 Identities=14% Similarity=0.029 Sum_probs=159.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q 008796 179 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 258 (553)
Q Consensus 179 l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeA 258 (553)
+..+..+...|++++|.++++++++. .+. ....+.++|.++...|++++|
T Consensus 68 ~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~--------------------~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAVLLFEAAVQQ----------DPK--------------------HMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS----------CTT--------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----------CCC--------------------CHHHHHHHHHHHHHCcCHHHH
Confidence 44566777899999999999999876 112 122345778888889999999
Q ss_pred HHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh-----------------------
Q 008796 259 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS----------------------- 315 (553)
Q Consensus 259 l~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~----------------------- 315 (553)
++.+.+++++. |+ -+.++..+|.++...|++++|...|.++++...+..
T Consensus 118 ~~~~~~al~~~---~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 118 ISALRRCLELK---PD-----NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp HHHHHHHHHHC---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred HHHHHHHHhcC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 99999888773 43 244778888888888888888888888877543311
Q ss_pred -----------------------h--HHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHH
Q 008796 316 -----------------------M--QAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFA 366 (553)
Q Consensus 316 -----------------------g--~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~ 366 (553)
. .+.++.++|.+|...|++++ +.+++.+... .+.+++.
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~ 256 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-------------DYLLWNK 256 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------CHHHHHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------------CHHHHHH
Confidence 0 34566777777777777665 4444443110 2356677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHH-----
Q 008796 367 YGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ----- 441 (553)
Q Consensus 367 LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~q----- 441 (553)
+|.++...|++++|...|++++++.. ..+.++..||.++...|++.+|..++++++.+..+..++...
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQP-------GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 77777777777777777777776631 123566777777777777777777777777776655444333
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 442 IWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 442 a~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
..++..||.+|...|++++|...+++....+.
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 55667777777777777777777666555544
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=9.1e-15 Score=136.87 Aligned_cols=236 Identities=14% Similarity=0.032 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
+-++...+..+...|++++|.++++++++. . ... ..+.++|.++...|+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----~-----~~~----------------------~~~~~~~~~~~~~~~ 53 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL----H-----KDI----------------------TYLNNRAAAEYEKGE 53 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----S-----CCT----------------------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----h-----ccH----------------------HHHHHHHHHHHHccc
Confidence 456777788888999999999999999987 2 111 135678889999999
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCCh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~ 334 (553)
+++|++.+.+++++....+.. ....+.++..+|.++..+|++++|..+|.+++++..+ +.++...|++
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------~~~~~~~~~~ 121 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRAD-YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----------ADILTKLRNA 121 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccc-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----------hHHHHHHhHH
Confidence 999999999999999887431 2334789999999999999999999999999987655 3445555555
Q ss_pred HHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHH
Q 008796 335 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 414 (553)
Q Consensus 335 e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~la 414 (553)
++ |+..++..... . ...+.+++.+|.++...|++++|..++++++++.. . ...++..+|.++..
T Consensus 122 ~~---a~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~------~~~~~~~l~~~~~~ 185 (258)
T 3uq3_A 122 EK---ELKKAEAEAYV-----N-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-E------DARGYSNRAAALAK 185 (258)
T ss_dssp HH---HHHHHHHHHHC-----C-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T------CHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHc-----C-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-c------cHHHHHHHHHHHHH
Confidence 54 33333322111 0 12578899999999999999999999999999852 1 24688999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Q 008796 415 LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDEL 475 (553)
Q Consensus 415 lGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L 475 (553)
.|++.+|...+++++.+. +....++..+|.+|...|++++|.+.++.+.+...+.
T Consensus 186 ~~~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 186 LMSFPEAIADCNKAIEKD------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence 999999999999998863 2234678899999999999999999999998887543
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=6.4e-16 Score=147.33 Aligned_cols=240 Identities=10% Similarity=0.006 Sum_probs=190.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q 008796 178 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 257 (553)
Q Consensus 178 ~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ae 257 (553)
.+..+.++...|++++|+++++++++. .+.. ...+.++|.++...|++++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~---------~p~~---------------------~~~~~~l~~~~~~~~~~~~ 55 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK---------KYNS---------------------PYIYNRRAVCYYELAKYDL 55 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT---------TCCC---------------------STTHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---------CCCc---------------------HHHHHHHHHHHHHHhhHHH
Confidence 455677888999999999999999876 1111 1124677888899999999
Q ss_pred HHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHH
Q 008796 258 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESS 337 (553)
Q Consensus 258 Al~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~ 337 (553)
|++.+.++++. ...++ ..+.++..+|.++..+|++++|..+|.+|++...+ .+.++.++|.+|...|++++
T Consensus 56 A~~~~~~a~~~-~~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~- 126 (272)
T 3u4t_A 56 AQKDIETYFSK-VNATK----AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT---RLDMYGQIGSYFYNKGNFPL- 126 (272)
T ss_dssp HHHHHHHHHTT-SCTTT----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHhc-cCchh----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHccCHHH-
Confidence 99999999982 22222 24668899999999999999999999999987654 33688999999999999875
Q ss_pred HHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCC
Q 008796 338 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD 417 (553)
Q Consensus 338 ~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd 417 (553)
|+..++...... .. ...+++++|...+..+++++|...|++++++.. .. ..++..+|.++...|+
T Consensus 127 --A~~~~~~al~~~---~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~------~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 127 --AIQYMEKQIRPT---TT---DPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NI------YIGYLWRARANAAQDP 191 (272)
T ss_dssp --HHHHHGGGCCSS---CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TC------HHHHHHHHHHHHHHST
T ss_pred --HHHHHHHHhhcC---CC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cc------hHHHHHHHHHHHHcCc
Confidence 333333332111 11 467899999555666799999999999999852 21 4678899999999999
Q ss_pred ---hHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 418 ---TVQAREILRSSLTLAKKLYD--IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 418 ---~~eA~~~l~~AL~LArklgD--~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+++|...+++++.+.++.++ ......++..||.+|...|++++|.++++.+...
T Consensus 192 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp TCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88999999999999988887 4555678899999999999999999999988765
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=9.2e-16 Score=153.57 Aligned_cols=241 Identities=13% Similarity=0.024 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
-++...+.++...|++++|+++++++++. .+. ....+.++|.++..+|++
T Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~--------------------~~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 100 EAWQFLGITQAENENEQAAIVALQRCLEL----------QPN--------------------NLKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------CCC--------------------CHHHHHHHHHHHHccccH
Confidence 45677777888899999999999999987 112 123467889999999999
Q ss_pred HHHHHHHHHHHHHHHHCCchhh--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCC
Q 008796 256 VEAQEALVQMKNWFIRFPTILQ--ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 333 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~--~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd 333 (553)
++|++.+.+++++....++... .+.+.+...+|..+...|++++|..+|.++++...+. ..+.++.++|.+|...|+
T Consensus 150 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 150 QDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-IDPDLQTGLGVLFHLSGE 228 (365)
T ss_dssp HHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS-CCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-cCHHHHHHHHHHHHHCCC
Confidence 9999999999998776555211 1346677888999999999999999999999875441 145678999999999999
Q ss_pred hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHH
Q 008796 334 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 409 (553)
Q Consensus 334 ~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG 409 (553)
+++ +.+++.+... -+.+++++|.++..+|++++|+.+|++++++.. ..+.++..||
T Consensus 229 ~~~A~~~~~~al~~~p~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~ 288 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPE-------------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-------GFIRSRYNLG 288 (365)
T ss_dssp HHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CchHHHHHHH
Confidence 887 6666654211 356899999999999999999999999999842 1267899999
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 008796 410 NLALALHDTVQAREILRSSLTLAKKLYDI------PTQIWALSVLTALYQQLGDRGNEMENDEY 467 (553)
Q Consensus 410 ~i~lalGd~~eA~~~l~~AL~LArklgD~------~~qa~aL~~Lg~ly~alGd~~~A~e~~e~ 467 (553)
.++..+|++.+|..++++|+.+..+..+. .....+...|+.++...|+++.+....+.
T Consensus 289 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 289 ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999999999998876553 22356778999999999999887765544
No 28
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.69 E-value=7.6e-15 Score=145.04 Aligned_cols=198 Identities=6% Similarity=-0.063 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 240 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 240 ~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
..+...+..+...|+|++|++.+.++++.....++. ......+..+|.++...|++++|..+|.+|++..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------- 145 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF--QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-------- 145 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH--HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--------
Confidence 345566777788899999999988888765433321 2234456678888888888888888888666532
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-h
Q 008796 320 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-L 398 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd-r 398 (553)
... .+....+.+++++|.++..+|+|++|..+|.+|+++.. ...+ .
T Consensus 146 -------------------------~~~-------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~-~~~~~~ 192 (293)
T 2qfc_A 146 -------------------------LTG-------IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE-ALHDNE 192 (293)
T ss_dssp -------------------------CCS-------SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCH
T ss_pred -------------------------hcC-------CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hcCccc
Confidence 221 12223678999999999999999999999999999985 4544 4
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHHHHHhh
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE-MENDEYRRKKLDELQK 477 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A-~e~~e~a~~~~d~L~~ 477 (553)
...+.+++++|.++..+|++++|..++++|+.+..+.++....+.++..+|.+|...|++++| .++++.+..+++.+..
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 445589999999999999999999999999999999999988999999999999999999999 8889999999988876
Q ss_pred HHH
Q 008796 478 RLA 480 (553)
Q Consensus 478 ~~~ 480 (553)
...
T Consensus 273 ~~~ 275 (293)
T 2qfc_A 273 HAY 275 (293)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.5e-15 Score=147.39 Aligned_cols=200 Identities=15% Similarity=0.106 Sum_probs=162.4
Q ss_pred HHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 241 FLENKVAVELTRS-GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 241 lLenLg~~~l~~G-r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
.+..+|.++...| ++++|++.+.+++++. |+ .+.++..+|.++...|++++|...|.++++...+. ..
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~ 160 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLE---KT-----YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HL 160 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTC---TT-----CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---SH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC---Cc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---HH
Confidence 3567888889999 9999999999998764 33 13468899999999999999999999999876542 34
Q ss_pred HHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 008796 320 CHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM 395 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~el 395 (553)
+..++|.+|...|++++ +.+++.+.. . .+.+++.+|.++..+|++++|...+++++++.. ..
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~ 226 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAP----------E---DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK-AI 226 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT----------T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCC----------C---ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh-hc
Confidence 56679999999999886 444443311 1 357899999999999999999999999999974 56
Q ss_pred cChH---hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 396 GNLQ---LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 396 Gdr~---leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
++.. ..+.++..+|.++...|++++|..++++++.+.. ....++..+|.+|...|++++|.++++.+...
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP------QNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc------cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 6542 3367899999999999999999999999998742 23457889999999999999999998876643
No 30
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.69 E-value=3.6e-15 Score=128.52 Aligned_cols=153 Identities=19% Similarity=0.160 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 315 SMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 315 ~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
...+.++.++|.+|...|++++ +.+++++.... .+....+.+++.+|.++..+|++++|..++.+++++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 78 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-------GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL 78 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344444444444444444443 44444444443 233447889999999999999999999999999999
Q ss_pred HHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 391 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 391 ar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
.. ..+++...+.++..+|.++...|++++|.+++++|+.++++.++......++..+|.+|...|++++|.++++.+..
T Consensus 79 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 79 AR-QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HH-HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 85 78998999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 008796 471 KLDEL 475 (553)
Q Consensus 471 ~~d~L 475 (553)
..+++
T Consensus 158 ~~~~~ 162 (164)
T 3ro3_A 158 ISREV 162 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87654
No 31
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.68 E-value=1.3e-14 Score=141.65 Aligned_cols=259 Identities=13% Similarity=0.078 Sum_probs=196.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
++...+.++...|++++|.+++++++... +. ..+.......++.++ .......+|.++...|+++
T Consensus 73 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------~~--~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSN----------PS--EQEEKEAESQLVKAD---EMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSC----------CC--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC----------Cc--ccChHHHHHHHHHHH---HHHHHHHHHHHHHHccCHH
Confidence 46667777888899999999999988761 10 001111123344555 5666778899999999999
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 336 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~ 336 (553)
+|++.+.+++++ .|+ -+.++..+|.++..+|++++|...|.++++...+ ...++.++|.+|...|++++
T Consensus 138 ~A~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 138 AAITFLDKILEV---CVW-----DAELRELRAECFIKEGEPRKAISDLKAASKLKSD---NTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHh---CCC-----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHH
Confidence 999999999876 344 2457899999999999999999999999876543 34678899999999999887
Q ss_pred ----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHH
Q 008796 337 ----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 412 (553)
Q Consensus 337 ----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~ 412 (553)
+.+++.+......... .............+|.++...|++++|...+++++++. -.+......++..+|.++
T Consensus 207 A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 207 SLSEVRECLKLDQDHKRCFA-HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHH
Confidence 6666654332210000 00000122345577999999999999999999999985 336666778899999999
Q ss_pred HHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 413 LALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 413 lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
...|++.+|...+++++.+. +....++..+|.+|...|++++|.+.++.+.+.
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999872 223458899999999999999999999988765
No 32
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.68 E-value=3.9e-15 Score=144.50 Aligned_cols=233 Identities=13% Similarity=0.036 Sum_probs=187.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q 008796 179 LMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 258 (553)
Q Consensus 179 l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeA 258 (553)
+..+..+...|+|++|.+++++++.. .+.. ...+..++.++...|++++|
T Consensus 26 ~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~---------------------~~~~~~~~~~~~~~~~~~~A 75 (330)
T 3hym_B 26 VSLAERHYYNCDFKMCYKLTSVVMEK---------DPFH---------------------ASCLPVHIGTLVELNKANEL 75 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTC---------------------TTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---------CCCC---------------------hhhHHHHHHHHHHhhhHHHH
Confidence 44455566679999999999998876 1111 11134556677899999999
Q ss_pred HHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH-
Q 008796 259 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES- 336 (553)
Q Consensus 259 l~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG-~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~- 336 (553)
+..+.++++. .|+ -+.++..+|.++...| ++++|..+|.++++...+ ...++.++|.+|...|++++
T Consensus 76 ~~~~~~~~~~---~~~-----~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 76 FYLSHKLVDL---YPS-----NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT---YGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp HHHHHHHHHH---CTT-----STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT---CTHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHh---CcC-----CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHccCHHHH
Confidence 9999999986 444 2457889999999999 999999999999876543 34568899999999999887
Q ss_pred ---HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHH
Q 008796 337 ---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 413 (553)
Q Consensus 337 ---~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~l 413 (553)
+.+++.+... ...+++.+|.++...|++++|...+++++++.. . .+.++..+|.++.
T Consensus 145 ~~~~~~a~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~------~~~~~~~l~~~~~ 204 (330)
T 3hym_B 145 MAAYFTAAQLMKG-------------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-E------DPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHHHHHHTTT-------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-T------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-C------ChHHHHHHHHHHH
Confidence 5666555322 224677799999999999999999999998852 1 2568899999999
Q ss_pred HCCChHHHHHHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 414 ALHDTVQAREILRSSLTLAKKLYDI---PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 414 alGd~~eA~~~l~~AL~LArklgD~---~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
..|++++|...+++++.+..+.++. +....++..+|.+|...|++++|.+.++.+....
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 9999999999999999999887765 3346688899999999999999999999988763
No 33
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=6e-15 Score=149.20 Aligned_cols=227 Identities=17% Similarity=0.128 Sum_probs=173.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q 008796 178 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 257 (553)
Q Consensus 178 ~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ae 257 (553)
+...+.++...|++++|.+++++++.. .+. ....+.++|.++...|++++
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~----------~p~--------------------~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIET----------QPN--------------------FAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh----------CCC--------------------CHHHHHHHHHHHHHcCCHHH
Confidence 334455566677777777777777665 111 12345678888899999999
Q ss_pred HHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH-
Q 008796 258 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES- 336 (553)
Q Consensus 258 Al~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~- 336 (553)
|++.+++++++ .|+. ..++..+|.++...|++++|...|.+++....+ ...++.++|.+|...|++++
T Consensus 188 A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 188 AIHHFEKAVTL---DPNF-----LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHHHHHHHHHH---CTTC-----HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhc---CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHHHHHcCCHHHH
Confidence 99999999876 4542 447888999999999999999999988876543 35678899999999999886
Q ss_pred ---HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHH
Q 008796 337 ---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 413 (553)
Q Consensus 337 ---~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~l 413 (553)
+.+++++. |. -..+++++|.++...|++++|...|++++++.- ..+.+++.+|.++.
T Consensus 257 ~~~~~~al~~~-p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 257 IDTYRRAIELQ-PH------------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-------THADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTC-SS------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-------ccHHHHHHHHHHHH
Confidence 55555431 11 235788999999999999999999999998841 12457889999999
Q ss_pred HCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 414 ALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 414 alGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
..|++++|...+++++.+. +....++..||.+|...|++++|.+.++.+.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999988652 233557889999999999999999999887653
No 34
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=6.4e-15 Score=149.01 Aligned_cols=243 Identities=12% Similarity=0.059 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHH-----------HH------
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLM-----------LL------ 238 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~-----------L~------ 238 (553)
-+|...+..+...|++++|.+++++++.. .+. ....-..+|.+|.. -+
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 132 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRL----------KPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------Ccc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45666677778899999999999999876 111 00000111111100 00
Q ss_pred --HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhh
Q 008796 239 --MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM 316 (553)
Q Consensus 239 --a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g 316 (553)
.....++|.++..+|++++|++.+.+++++ .|+ .+.++..+|..+...|++++|..+|++|+++..+
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--- 201 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET---QPN-----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN--- 201 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Confidence 112345555555555555555555555543 233 1335555666666666666666666666554322
Q ss_pred HHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 317 QAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 317 ~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
...++.++|.++...|++++ +.+++.+. |. .+.+++++|.++..+|++++|...|++++++.-
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 268 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 23445566666666666554 34443321 10 235666777777777777777777777766521
Q ss_pred HhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 393 NHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 393 ~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
. ...++..||.++...|++++|.+.+++++.+. +....++..++.++...|++++|.+.++.+..
T Consensus 269 ---~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 269 ---H----FPDAYCNLANALKEKGSVAEAEDCYNTALRLC------PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp ---S----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred ---C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 12356677777777777777777777777652 12234566777777777777777777666554
No 35
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.67 E-value=5.5e-15 Score=146.06 Aligned_cols=193 Identities=9% Similarity=0.043 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQ 317 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~ 317 (553)
.+.+.+......|+|++|.+.+.++++.....|+. ......+..+|.++...|++++|..+|.+|++.... ..+.
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF--QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHH--HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 34556777899999999999999999854444442 223456677999999999999999999999996533 4467
Q ss_pred HHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
+.+++++|.+|...|++++ +.+|+.++.... ......+.+++++|.++..+|+|++|..++.+|++++.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~- 227 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALH------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC- 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-
Confidence 8899999999999999987 889998887652 12344788999999999999999999999999999995
Q ss_pred hccChHhHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHhCChHHHH
Q 008796 394 HMGNLQLVSQYLTILGNLALALHD-TVQAREILRSSLTLAKKLYDIPTQI 442 (553)
Q Consensus 394 elGdr~leA~aL~~LG~i~lalGd-~~eA~~~l~~AL~LArklgD~~~qa 442 (553)
+.++....+.++.++|.++..+|+ +++|.+++++|+.+++..++.....
T Consensus 228 ~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~~~ 277 (293)
T 3u3w_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKE 277 (293)
T ss_dssp HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGGGG
T ss_pred HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 789999999999999999999995 5999999999999999999976544
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.3e-14 Score=140.59 Aligned_cols=238 Identities=12% Similarity=-0.040 Sum_probs=154.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
.++..+..+...|++++|.++++++++. .+. ....+..+|.++...|+++
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~--------------------~~~~~~~l~~~~~~~~~~~ 72 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA----------APE--------------------REEAWRSLGLTQAENEKDG 72 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh----------CCC--------------------CHHHHHHHHHHHHHcCCHH
Confidence 3455667778899999999999998876 111 1122456788888999999
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh---------------------
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS--------------------- 315 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~--------------------- 315 (553)
+|++.+.+++++ .|+ .+.++..+|.++...|++++|...|.++++...+..
T Consensus 73 ~A~~~~~~a~~~---~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 73 LAIIALNHARML---DPK-----DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp HHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------
T ss_pred HHHHHHHHHHhc---CcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999887 344 144778888888899999999999988887532211
Q ss_pred -------------------------hHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHH
Q 008796 316 -------------------------MQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFA 366 (553)
Q Consensus 316 -------------------------g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~ 366 (553)
....++.++|.+|...|++++ +.+++.+... ...+++.
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~ 211 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-------------DAQLWNK 211 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------CHHHHHH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------------cHHHHHH
Confidence 013455666777777776665 3333332110 2345667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH------
Q 008796 367 YGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT------ 440 (553)
Q Consensus 367 LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~------ 440 (553)
+|.++...|++++|...+++++++.. . ...++..+|.++...|++++|...+++++.+.....+..+
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~~~---~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 284 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDINP---G----YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC---C----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhc
Confidence 77777777777777777777766531 1 1335666777777777777777777777766554333332
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 441 QIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 441 qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
...++..++.++...|++++|.+.++.+....
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 45566667777777777777766665554443
No 37
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.66 E-value=1.2e-14 Score=125.33 Aligned_cols=157 Identities=20% Similarity=0.105 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
.+.++..+|.++...|++++|++++.++++++...++. ...+.++..+|.++..+|++++|..+|.+|++...
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----- 80 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR----- 80 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----
Confidence 56677889999999999999999999999999887773 44677888899999999999999999887765432
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
..+ +....+.+++++|.++..+|++++|..++.+++++.. +.++
T Consensus 81 ----------------------------~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~ 124 (164)
T 3ro3_A 81 ----------------------------QLK-------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ-ELKD 124 (164)
T ss_dssp ----------------------------HTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred ----------------------------HhC-------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-Hccc
Confidence 221 2223678899999999999999999999999999985 7999
Q ss_pred hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC
Q 008796 398 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 398 r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD 437 (553)
+...+.++..||.++...|++.+|.+++++|+.++++.+|
T Consensus 125 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~d 164 (164)
T 3ro3_A 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--
T ss_pred hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999988765
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=5.8e-14 Score=135.65 Aligned_cols=216 Identities=15% Similarity=-0.011 Sum_probs=179.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh----h
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT----R 252 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~----~ 252 (553)
+++..+..+...|++++|.++++++++. + ....+.++|.++.. .
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------~--------------------~~~a~~~lg~~~~~g~~~~ 55 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL------------K--------------------ENSGCFNLGVLYYQGQGVE 55 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT------------T--------------------CHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC------------C--------------------CHHHHHHHHHHHHcCCCcC
Confidence 4566677778889999999999998762 1 01124678888899 9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Q 008796 253 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 328 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~a----lG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vy 328 (553)
+++++|++.+.+|+++ + -+.++..+|.++.. .+++++|..+|++|++. +...++.++|.+|
T Consensus 56 ~~~~~A~~~~~~a~~~----~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~ 120 (273)
T 1ouv_A 56 KNLKKAASFYAKACDL----N------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----KYAEGCASLGGIY 120 (273)
T ss_dssp CCHHHHHHHHHHHHHT----T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC----C------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----CCccHHHHHHHHH
Confidence 9999999999999876 2 25588999999999 99999999999999976 3578899999999
Q ss_pred HH----hCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcc
Q 008796 329 FC----IGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 329 l~----~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~----qGr~~EA~~~L~eAL~Lar~elG 396 (553)
.. .|++++ +.+|+++ + -..+++++|.++.. .+++++|..+|++++++ +
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~------------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~ 180 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDL------------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----K 180 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT------------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T
T ss_pred HcCCCcccCHHHHHHHHHHHHhc------------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----C
Confidence 99 888776 5555442 1 24678999999999 99999999999999865 3
Q ss_pred ChHhHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----cCCchHHHHHHHHH
Q 008796 397 NLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ----LGDRGNEMENDEYR 468 (553)
Q Consensus 397 dr~leA~aL~~LG~i~la----lGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~a----lGd~~~A~e~~e~a 468 (553)
+ ..++..||.++.. .|++.+|..++++|+.. ++ ..+...||.+|.. .|++++|.++++.+
T Consensus 181 ~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 181 D----SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp C----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred C----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 3 4678999999999 99999999999999875 33 4578899999999 99999999999988
Q ss_pred HHH
Q 008796 469 RKK 471 (553)
Q Consensus 469 ~~~ 471 (553)
.+.
T Consensus 249 ~~~ 251 (273)
T 1ouv_A 249 CKL 251 (273)
T ss_dssp HHH
T ss_pred HHc
Confidence 665
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=3.5e-15 Score=141.88 Aligned_cols=191 Identities=14% Similarity=0.057 Sum_probs=147.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
.+.++|.++...|++++|+..+++++++ .|+ -+.++..+|.++..+|++++|...|.+|+++..+ .+.+
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a 75 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE---NPQ-----DPEALYWLARTQLKLGLVNPALENGKTLVARTPR---YLGG 75 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT---SSS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHH
Confidence 4578899999999999999999999875 555 2558899999999999999999999999987543 4567
Q ss_pred HHHHHHHHHHh-----------CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008796 321 HAYAAVSYFCI-----------GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLA 385 (553)
Q Consensus 321 L~NLA~vyl~~-----------Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~ 385 (553)
+.++|.+|... |++++ +.+|+++ .|. -+.+++++|.++..+|++++|+..|+
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~------------~~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-NPR------------YAPLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-CTT------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-Ccc------------cHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 89999999999 88876 5566554 221 35788999999999999999999999
Q ss_pred HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 386 KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 386 eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
+++++. .+ +.++.+||.++..+|++++|...+++++.+. +....++..||.++...|++++|.+.+
T Consensus 143 ~al~~~----~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 143 QALALE----DT----PEIRSALAELYLSMGRLDEALAQYAKALEQA------PKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHC----CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHTC-----------
T ss_pred HHHhcc----cc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 999983 22 4578899999999999999999999999872 233467889999999999999999888
Q ss_pred HHHH
Q 008796 466 EYRR 469 (553)
Q Consensus 466 e~a~ 469 (553)
+...
T Consensus 209 ~~~~ 212 (217)
T 2pl2_A 209 ALEH 212 (217)
T ss_dssp ----
T ss_pred HHHh
Confidence 7654
No 40
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.63 E-value=1.1e-13 Score=141.36 Aligned_cols=260 Identities=12% Similarity=0.077 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
.++...+.++...|++++|.++++++++. .+. ..........++.++ ......++|.++...|++
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~--~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKS----------NPS--ENEEKEAQSQLIKSD---EMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS----------CCC--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCC--ChhhHHHHHHHHHHH---HHHHHHHHHHHHHHcCCH
Confidence 45666677788899999999999998765 111 000000112233444 555677889999999999
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChH
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAE 335 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e 335 (553)
++|++.+.+++++ .|+ -+.++..+|.++...|++++|...|.++++...+ ...++.++|.+|...|+++
T Consensus 160 ~~A~~~~~~~~~~---~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 160 TAAIAFLDKILEV---CVW-----DAELRELRAECFIKEGEPRKAISDLKAASKLKND---NTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp HHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh---CCC-----ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHH
Confidence 9999999999976 344 2457899999999999999999999999987543 3578899999999999988
Q ss_pred H----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHH
Q 008796 336 S----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 411 (553)
Q Consensus 336 ~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i 411 (553)
+ +.+++.+........ ..............+|.++...|++++|...|++++++. -.+......++..+|.+
T Consensus 229 ~A~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 229 LSLSEVRECLKLDQDHKRCF-AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHH
Confidence 7 666665422110000 000000112334556999999999999999999999974 34556667899999999
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 412 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 412 ~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+...|++.+|...+++++.+. +....++..+|.++...|++++|.+.++.+.+.
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQME------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999872 223467889999999999999999999988764
No 41
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.1e-14 Score=144.57 Aligned_cols=222 Identities=9% Similarity=0.010 Sum_probs=192.0
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHCCch---------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---h
Q 008796 247 AVELTRSGFVEAQEALVQMKNWFIRFPTI---------LQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---K 314 (553)
Q Consensus 247 ~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl---------~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~ 314 (553)
......|+|.+|++.+.++++..+..++. .......++..+|..+...|++++|..+|.+++...+. .
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 33478899999999999999988776551 11223456889999999999999999999999987755 3
Q ss_pred hhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 315 SMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 315 ~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
...+.+..++|.++...|+++. +.+++.+....++. ..++.++.++|.++..+|+|++|...+.+++..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV-------FLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC-------SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc-------HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 3567889999999999999886 88888887776433 237899999999999999999999999999999
Q ss_pred HHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 391 AHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI-PTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 391 ar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~-~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
.. ..++....+.++..+|.++...|++.+|...+++|+.++..+++. ..++.....+|.+|...|++.+|..++..+.
T Consensus 165 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 165 FK-KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HT-TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HH-hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 85 688889999999999999999999999999999999999999875 6778899999999999999999999999988
Q ss_pred HHHHHHh
Q 008796 470 KKLDELQ 476 (553)
Q Consensus 470 ~~~d~L~ 476 (553)
...+...
T Consensus 244 ~~~~~~~ 250 (434)
T 4b4t_Q 244 ESYHNLT 250 (434)
T ss_dssp HHHHHTT
T ss_pred HHhhhhh
Confidence 8776654
No 42
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=9.4e-14 Score=141.94 Aligned_cols=234 Identities=9% Similarity=0.022 Sum_probs=192.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 008796 184 LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALV 263 (553)
Q Consensus 184 ~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~ 263 (553)
-....|+|++|.+.+.++++. .++.++......... .... .....|.+||.++..+|++++|.+.+.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~----~~~~~~~~~~~~~~~-~~~~--------~~~~al~~l~~~y~~~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDK----DSSQSSAAAGASVDD-KRRN--------EQETSILELGQLYVTMGAKDKLREFIP 79 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHS----CCCSSSBSSSSSBCS-HHHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhh----CcccchhHHHHHHHH-HHhh--------hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345679999999999998887 455444333111110 0101 144567899999999999999999999
Q ss_pred HHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---hhhHHHHHHHHHHHHHHhCChHH----
Q 008796 264 QMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---KSMQAMCHAYAAVSYFCIGDAES---- 336 (553)
Q Consensus 264 qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---~~g~A~aL~NLA~vyl~~Gd~e~---- 336 (553)
++++++...++ ......+.+.+|.++...|.+++|..++..++..... ..+++.+..++|.+|...|++++
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (434)
T 4b4t_Q 80 HSTEYMMQFAK--SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLAL 157 (434)
T ss_dssp HTHHHHHTSCH--HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHccc--hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHH
Confidence 99999999887 3557789999999999999999999999999987644 45789999999999999999887
Q ss_pred HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-hHhHHHHHHHHHHHHHHC
Q 008796 337 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALAL 415 (553)
Q Consensus 337 ~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd-r~leA~aL~~LG~i~lal 415 (553)
+.+++.......+ ....+.++..+|.++..+|++++|+..+++++++.. .+++ +...+..+..+|.++...
T Consensus 158 l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~~~ 229 (434)
T 4b4t_Q 158 INDLLREFKKLDD-------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN-SIYCPTQTVAELDLMSGILHCED 229 (434)
T ss_dssp HHHHHHHHTTSSC-------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccc-------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHHHHHH
Confidence 6677777666633 234889999999999999999999999999999986 5665 577899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCChHH
Q 008796 416 HDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 416 Gd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
|++.+|..++.+++......++...
T Consensus 230 ~~y~~A~~~~~~a~~~~~~~~~~~~ 254 (434)
T 4b4t_Q 230 KDYKTAFSYFFESFESYHNLTTHNS 254 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTSSC
T ss_pred HhHHHHHHHHHHHHHHhhhhhhhhh
Confidence 9999999999999999999887543
No 43
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.62 E-value=1.9e-13 Score=145.30 Aligned_cols=251 Identities=12% Similarity=-0.003 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHH-------------H----
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLM-------------L---- 237 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~-------------L---- 237 (553)
+-++...+..+...|++++|.++++++++. .. .+... . ..++.+|.. +
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~--------~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEI----DP--YNLDV--------Y-PLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT--TCCTT--------H-HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHc----Cc--ccHHH--------H-HHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 345556667788899999999999998865 10 00000 0 111111100 0
Q ss_pred --HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh
Q 008796 238 --LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 315 (553)
Q Consensus 238 --~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~ 315 (553)
...+...+|.++...|++++|++.+.+++++ .|+ -..+++.+|..+...|++++|...|.++++...+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 439 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---DPQ-----FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-- 439 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT--
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--
Confidence 1346677899999999999999999999885 343 2347888999999999999999999999876432
Q ss_pred hHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 316 MQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 316 g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
...++.++|.+|...|++++ +.+++++... ...+++.+|.++...|++++|...|++++++.
T Consensus 440 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 440 -THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-------------DPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp -CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 35678889999999999887 4444443111 24678999999999999999999999999997
Q ss_pred HHhccC-hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 392 HNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 392 r~elGd-r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
. +.+. +...+.++..||.++...|++++|.+.+++++.+. + ....++..|+.+|...|++++|.+.++.+.+
T Consensus 506 ~-~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 506 K-KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS---T---NDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp H-HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h-ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---C---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4 4454 33347899999999999999999999999999873 2 2346788999999999999999999988876
Q ss_pred H
Q 008796 471 K 471 (553)
Q Consensus 471 ~ 471 (553)
.
T Consensus 579 ~ 579 (597)
T 2xpi_A 579 I 579 (597)
T ss_dssp H
T ss_pred c
Confidence 5
No 44
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.62 E-value=6.5e-14 Score=138.35 Aligned_cols=185 Identities=8% Similarity=-0.072 Sum_probs=161.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccchhh---HHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchh
Q 008796 286 LRGQYAHSVGCYSEAAFHYVEAAKITESKSM---QAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVR 358 (553)
Q Consensus 286 lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g---~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr 358 (553)
.....+...|+|++|...+.+++........ .+....++|.+|...|++++ +.+|+.+..... +..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-------~~~ 152 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-------DVY 152 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS-------CTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc-------cHH
Confidence 3466778899999999999999986544222 24556679999999999887 888888665542 333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-cChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM-GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~el-Gdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD 437 (553)
..+.+++++|.+|..+|+|++|..+|.+|+++.. .. ++....+.++++||.++..+|++.+|..++++|+.++++.++
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLE-ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 4788999999999999999999999999999986 56 788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhhH
Q 008796 438 IPTQIWALSVLTALYQQLGDR-GNEMENDEYRRKKLDELQKR 478 (553)
Q Consensus 438 ~~~qa~aL~~Lg~ly~alGd~-~~A~e~~e~a~~~~d~L~~~ 478 (553)
....+.++..+|.+|..+|+. ++|.++++.+..+++.+++.
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999965 99999999999999987764
No 45
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.62 E-value=9.3e-14 Score=135.69 Aligned_cols=238 Identities=13% Similarity=0.053 Sum_probs=176.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
-+++..+..+...|++++|..+++++++. .+. ....+.++|.++...|++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~--------------------~~~~~~~~a~~~~~~~~~ 53 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG----------DPD--------------------NYIAYYRRATVFLAMGKS 53 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------Ccc--------------------cHHHHHHHHHHHHHccCH
Confidence 35667778888999999999999999886 112 123467889999999999
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH------------HHH
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC------------HAY 323 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a------------L~N 323 (553)
++|++.+.+++++ .|+. ..++..+|.++...|++++|...|.++++...+......+ ..+
T Consensus 54 ~~A~~~~~~~~~~---~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (359)
T 3ieg_A 54 KAALPDLTKVIAL---KMDF-----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRS 125 (359)
T ss_dssp HHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCc-----chHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 4542 3578999999999999999999999999876621122222 344
Q ss_pred HHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChH
Q 008796 324 AAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQ 399 (553)
Q Consensus 324 LA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~ 399 (553)
+|.++...|++++ +.+++..... ...+++.+|.++...|++++|...+.+++++.. .
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~--- 186 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVCVW-------------DAELRELRAECFIKEGEPRKAISDLKAASKLKS---D--- 186 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS---C---
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC-------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---C---
Confidence 5899999999887 4455443111 346789999999999999999999999987731 1
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 400 LVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT------QIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 400 leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~------qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
...++..+|.++...|++.+|...+++++.+.....+... ...+...+|.++...|++++|.+.++.+...
T Consensus 187 -~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 187 -NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2357889999999999999999999999866322211110 1112335577788888888888888776654
No 46
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.61 E-value=2.1e-13 Score=139.37 Aligned_cols=243 Identities=14% Similarity=0.071 Sum_probs=186.7
Q ss_pred cchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 008796 168 LPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVA 247 (553)
Q Consensus 168 Lp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~ 247 (553)
++...-.+-+++..+..+...|++++|.+++++++.. .+. ....+.++|.
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~--------------------~~~~~~~l~~ 68 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPD--------------------NYIAYYRRAT 68 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCc--------------------cHHHHHHHHH
Confidence 4444556777888888889999999999999999876 112 1234577899
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhh-----------
Q 008796 248 VELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM----------- 316 (553)
Q Consensus 248 ~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g----------- 316 (553)
++...|++++|++.+.+++++ .|+ .+.++..+|.++..+|++++|...|.++++...+...
T Consensus 69 ~~~~~g~~~~A~~~~~~al~~---~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 69 VFLAMGKSKAALPDLTKVIQL---KMD-----FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc---CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 999999999999999999987 344 2568899999999999999999999999986654331
Q ss_pred -HHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 317 -QAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 317 -~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
......++|.+|...|++++ +.+++.+. +. ...+++.+|.++...|++++|...|++++++.
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VW------------DAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT------------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC------------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 11224566888999999886 55554431 11 34688999999999999999999999999984
Q ss_pred HHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHH---------HHHHHHHHHHHHcCCchHHH
Q 008796 392 HNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI---------WALSVLTALYQQLGDRGNEM 462 (553)
Q Consensus 392 r~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa---------~aL~~Lg~ly~alGd~~~A~ 462 (553)
. .+ ..+++.+|.++...|++++|...+++++.+. ++...-. .....+|.++...|++++|.
T Consensus 208 ~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 208 N---DN----TEAFYKISTLYYQLGDHELSLSEVRECLKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp C---SC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred C---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 22 4688999999999999999999999998652 2222211 12244599999999999999
Q ss_pred HHHHHHHHH
Q 008796 463 ENDEYRRKK 471 (553)
Q Consensus 463 e~~e~a~~~ 471 (553)
+.++.+...
T Consensus 278 ~~~~~~l~~ 286 (450)
T 2y4t_A 278 SKYESVMKT 286 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999888764
No 47
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=8.6e-14 Score=143.82 Aligned_cols=264 Identities=13% Similarity=0.045 Sum_probs=160.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
+|-+-+.+...+|++++|++++++|++++ .+.+.... ++. .+..+.|+|.++..+|+++
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~----~~~~~~~~--~~~---------------~~~~~~nla~~y~~~g~~~ 111 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELI----QQEHADQA--EIR---------------SLVTWGNYAWVYYHMGRLS 111 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHSGGGC--TTT---------------THHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HhcCcccc--chH---------------HHHHHHHHHHHHHHcCChH
Confidence 45555667788999999999999999994 43332211 111 2345689999999999999
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH---h
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG--CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC---I 331 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG--~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~---~ 331 (553)
+|+.++.+++++++.+++......+.++..+|......| +|++|...|++|+++..+.. .+..++|.++.. .
T Consensus 112 ~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~---~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP---EFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH---HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCc
Confidence 999999999999999876444445778888888776654 79999999999998765432 334455555443 3
Q ss_pred CChHH----HHHHHHhhccc--------------ccccccc---cch--------hHHHHHHHHHHHHHHHcCCHHHHHH
Q 008796 332 GDAES----SSQAIDLIGPV--------------YQMKDTI---NGV--------REEASLHFAYGLLLMRQQDFQEARN 382 (553)
Q Consensus 332 Gd~e~----~~qAL~L~r~l--------------gd~~g~~---~~l--------r~eA~aL~~LG~~~~~qGr~~EA~~ 382 (553)
|++++ +.+|+.+-... +...+.. ... .....+++++|.++...|++++|..
T Consensus 189 ~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHH
Confidence 44332 55666542110 0000000 000 0023455566666666666666666
Q ss_pred HHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC------------ChHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHH
Q 008796 383 RLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH------------DTVQAREILRSSLTLAKKLYD-IPTQIWALSVLT 449 (553)
Q Consensus 383 ~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG------------d~~eA~~~l~~AL~LArklgD-~~~qa~aL~~Lg 449 (553)
.+.+|+++. ...+.++..||.+|...+ ....+...+..|+...++... .+....+...+|
T Consensus 269 ~~~~al~~~-------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg 341 (472)
T 4g1t_A 269 LLKKALEYI-------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILA 341 (472)
T ss_dssp HHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHH
T ss_pred HHHHHHHhC-------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHH
Confidence 666666553 112345555665554321 111222222222222222100 112223456899
Q ss_pred HHHHHcCCchHHHHHHHHHHHH
Q 008796 450 ALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 450 ~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.+|...|++++|.+.|+.+...
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999988753
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=2e-14 Score=136.67 Aligned_cols=191 Identities=15% Similarity=0.058 Sum_probs=145.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
+++..+..+...|++++|+.+++++++. .+. -...+.++|.++..+|+++
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~--------------------~~~a~~~lg~~~~~~g~~~ 56 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE----------NPQ--------------------DPEALYWLARTQLKLGLVN 56 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT----------SSS--------------------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC--------------------CHHHHHHHHHHHHHcCCHH
Confidence 4556677888999999999999999876 222 1234678999999999999
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-----------GCYSEAAFHYVEAAKITESKSMQAMCHAYAA 325 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~al-----------G~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA 325 (553)
+|++.+++++++ .|+. +.++..+|.++..+ |++++|...|.+|+++..+ .+.++.++|
T Consensus 57 ~A~~~~~~al~~---~P~~-----~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~lg 125 (217)
T 2pl2_A 57 PALENGKTLVAR---TPRY-----LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR---YAPLHLQRG 125 (217)
T ss_dssp HHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCc-----HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc---cHHHHHHHH
Confidence 999999999987 4552 45788999999999 9999999999999987543 456788999
Q ss_pred HHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhH
Q 008796 326 VSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV 401 (553)
Q Consensus 326 ~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~le 401 (553)
.+|...|++++ +++|+++- . -..+++++|.++..+|++++|...|++++++. -+ .
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~-~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---P~----~ 184 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE-D-------------TPEIRSALAELYLSMGRLDEALAQYAKALEQA---PK----D 184 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-C-------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TT----C
T ss_pred HHHHHcCChHHHHHHHHHHHhcc-c-------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----C
Confidence 99999999987 77777764 2 24678999999999999999999999999984 12 2
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 008796 402 SQYLTILGNLALALHDTVQAREILRSSL 429 (553)
Q Consensus 402 A~aL~~LG~i~lalGd~~eA~~~l~~AL 429 (553)
..++..+|.++...|++++|...++++-
T Consensus 185 ~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 185 LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 4678899999999999999999888763
No 49
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.60 E-value=1.1e-13 Score=144.54 Aligned_cols=239 Identities=12% Similarity=-0.006 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 174 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 174 ~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
.+.++...+.++...|++++|.+++++++.. .+. ...+..+|.++...|
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----------~~~---------------------~~~~~~l~~~~~~~~ 290 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL----------HPT---------------------PNSYIFLALTLADKE 290 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CCC---------------------HHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc----------CCC---------------------chHHHHHHHHHHHhc
Confidence 4566777888899999999999999999887 111 012356788889999
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCC
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 333 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd 333 (553)
++++|++.+.+++++. |+ .+.++..+|.++...|++++|...|.++++...+. ..++.++|.+|...|+
T Consensus 291 ~~~~A~~~~~~~~~~~---~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDLN---PE-----YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---VYPYIQLACLLYKQGK 359 (537)
T ss_dssp CCHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---SHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhccC---CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC
Confidence 9999999999999874 44 24578999999999999999999999999876442 3678899999999999
Q ss_pred hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHH
Q 008796 334 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 409 (553)
Q Consensus 334 ~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG 409 (553)
+++ +.+++.+... ...+++.+|.++...|++++|...|++++++.. ...+.......+..+|
T Consensus 360 ~~~A~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 360 FTESEAFFNETKLKFPT-------------LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE-VQEKIHVGIGPLIGKA 425 (537)
T ss_dssp HHHHHHHHHHHHHHCTT-------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HCSSCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-------------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHH
Confidence 887 5555554211 235788999999999999999999999999984 4555455555677889
Q ss_pred HHHHHC----------CChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 410 NLALAL----------HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 410 ~i~lal----------Gd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
.++... |++.+|...+++++.+.. .-..++..||.+|...|++++|.+.++.+.+....
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDP------RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999 999999999999998732 22367899999999999999999999999887654
No 50
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.59 E-value=7.5e-14 Score=137.87 Aligned_cols=200 Identities=12% Similarity=0.047 Sum_probs=159.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Q 008796 178 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVE 257 (553)
Q Consensus 178 ~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ae 257 (553)
+.-.+..+...|+|++|.++++++++. ... ... . . ..+.....+|.++...|++++
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~----~~~---~~~--------~-~--------~~~~~~~~~~~~~~~~~~~~~ 133 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKK----EEY---HPE--------F-Q--------QFLQWQYYVAAYVLKKVDYEY 133 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT----CCC---CHH--------H-H--------HHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcc----ccC---Chh--------H-H--------HHHHHHHHHHHHHhcCCCHHH
Confidence 344556777899999999999988876 111 000 0 0 023334668999999999999
Q ss_pred HHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHH
Q 008796 258 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESS 337 (553)
Q Consensus 258 Al~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~ 337 (553)
|+.++.+|+++....++. ...+.+++.+|.++..+|+|++|..+|.+|+++..
T Consensus 134 A~~~~~~al~~~~~~~~~--~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~------------------------- 186 (293)
T 2qfc_A 134 CILELKKLLNQQLTGIDV--YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE------------------------- 186 (293)
T ss_dssp HHHHHHHHHTTCCCSSCT--THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------------------
Confidence 999999999988776663 33678999999999999999999999998875422
Q ss_pred HHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCC
Q 008796 338 SQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD 417 (553)
Q Consensus 338 ~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd 417 (553)
...+ .....+.+++++|.++..+|+|++|..++.+|+++.. ..++....+.++.++|.++..+|+
T Consensus 187 --------~~~~------~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~-~~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 187 --------ALHD------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-RINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp --------HSCC------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred --------hcCc------cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHcCC
Confidence 1100 1111347899999999999999999999999999984 688888999999999999999999
Q ss_pred hHHH-HHHHHHHHHHHHHhCChHHHHH
Q 008796 418 TVQA-REILRSSLTLAKKLYDIPTQIW 443 (553)
Q Consensus 418 ~~eA-~~~l~~AL~LArklgD~~~qa~ 443 (553)
+++| ..++++|+.+++..++......
T Consensus 252 ~~~Ai~~~~~~Al~~~~~~~~~~~~~~ 278 (293)
T 2qfc_A 252 EEAEIEDAYKKASFFFDILEMHAYKEA 278 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCcHhhHHH
Confidence 9999 8999999999999998765333
No 51
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.59 E-value=1.8e-13 Score=135.79 Aligned_cols=214 Identities=10% Similarity=0.021 Sum_probs=163.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
-++...+.++...|++++|.++++++++. . +. ....+.++|.++...|++
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~------~~--------------------~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLEL----K------PD--------------------NQTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C------TT--------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhc----C------CC--------------------CHHHHHHHHHHHHHcCCH
Confidence 35566677788899999999999999987 1 11 112345667777777777
Q ss_pred HHHHHHHHHHHHHHHHCCchhh-----------------------------------------hh--HHHHHHHHHHHHH
Q 008796 256 VEAQEALVQMKNWFIRFPTILQ-----------------------------------------AC--ESMIEMLRGQYAH 292 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~-----------------------------------------~~--~A~~~~lLG~~~~ 292 (553)
++|++.+.+++++....+.... .. .+.++..+|.++.
T Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 7777777777665433222110 00 3678899999999
Q ss_pred HcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHH
Q 008796 293 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYG 368 (553)
Q Consensus 293 alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG 368 (553)
..|++++|..+|.++++...+ ...++.++|.+|...|++++ +.+++.+. |. ...+++++|
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~------------~~~~~~~l~ 292 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPN---DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG------------YIRSRYNLG 292 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------------CHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC------------cHHHHHHHH
Confidence 999999999999999987543 35688999999999999887 66666642 11 357889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccChHhH-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC
Q 008796 369 LLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLV-----SQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 436 (553)
Q Consensus 369 ~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~le-----A~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg 436 (553)
.++..+|++++|..+|++++++.. ..+++... +.++..||.++..+|++++|..++++++...++.-
T Consensus 293 ~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 364 (368)
T 1fch_A 293 ISCINLGAHREAVEHFLEALNMQR-KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364 (368)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH-TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhc
Confidence 999999999999999999999974 45443333 78899999999999999999999999999887653
No 52
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.58 E-value=1.3e-12 Score=138.86 Aligned_cols=209 Identities=16% Similarity=0.096 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchh--------------------------hhhHHHHHHHHHHHHHH
Q 008796 240 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTIL--------------------------QACESMIEMLRGQYAHS 293 (553)
Q Consensus 240 ~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~--------------------------~~~~A~~~~lLG~~~~a 293 (553)
..+..++.++...|++++|++.+.++++......... ......+++.+|..+..
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 4567788888999999999999998886532211100 01135678889999999
Q ss_pred cCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHH
Q 008796 294 VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGL 369 (553)
Q Consensus 294 lG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~ 369 (553)
.|++++|...|.++++...+ ...+++++|.+|...|++++ +++++.+... -..+++.+|.
T Consensus 386 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~l~~ 449 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMDPQ---FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-------------THLPYLFLGM 449 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-------------CSHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------------chHHHHHHHH
Confidence 99999999999999875432 34578899999999999886 4444433111 2467899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHH-HHHHHHH
Q 008796 370 LLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ-IWALSVL 448 (553)
Q Consensus 370 ~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~q-a~aL~~L 448 (553)
++...|++++|...|++++++. -.+ ..+++.+|.++...|++++|.+.+++++.+..+.+..+.. ..++..|
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF---QYD----PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC---CCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---CCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999874 122 3578999999999999999999999999999887765553 7788999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHH
Q 008796 449 TALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 449 g~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+.+|...|++++|.+.++.+...
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999988765
No 53
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-13 Score=143.03 Aligned_cols=239 Identities=13% Similarity=0.043 Sum_probs=194.0
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008796 172 AVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 251 (553)
Q Consensus 172 ~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~ 251 (553)
...+.++...+..+...|++++|.+++++++.. . +. ...+.++|.++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~------~~---------------------~~~~~~l~~~~~~ 282 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL----F------PR---------------------VNSYIYMALIMAD 282 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----C------CC---------------------HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----C------cc---------------------HHHHHHHHHHHHH
Confidence 445667777888889999999999999999877 1 00 1124677888899
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHh
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~ 331 (553)
.|++++|++.+.+++++.... +.++..+|.++...|++++|...|.++++...+ ...++.++|.+|...
T Consensus 283 ~~~~~~A~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 283 RNDSTEYYNYFDKALKLDSNN--------SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE---NIFPYIQLACLAYRE 351 (514)
T ss_dssp SSCCTTGGGHHHHHHTTCTTC--------THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS---CSHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHhhcCcCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh---hHHHHHHHHHHHHHc
Confidence 999999999999998764322 347889999999999999999999999987654 245889999999999
Q ss_pred CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHH
Q 008796 332 GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTI 407 (553)
Q Consensus 332 Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~ 407 (553)
|++++ +.+++.+... ...+++.+|.++...|++++|...+.+++++.. ...+....+.++..
T Consensus 352 ~~~~~A~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~ 417 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKFPE-------------APEVPNFFAEILTDKNDFDKALKQYDLAIELEN-KLDGIYVGIAPLVG 417 (514)
T ss_dssp TCHHHHHHHHHHHHHHSTT-------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-TSSSCSSCSHHHHH
T ss_pred CCHHHHHHHHHHHHHHccc-------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh-ccchHHHHHHHHHH
Confidence 99887 5555543211 235789999999999999999999999999974 45554455668999
Q ss_pred HHHHHHH---CCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 408 LGNLALA---LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 408 LG~i~la---lGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
+|.++.. .|++.+|...+++++.+. + .-..++..+|.+|...|++++|.+.++.+....
T Consensus 418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 418 KATLLTRNPTVENFIEATNLLEKASKLD---P---RSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHC---T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHhC---c---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999 999999999999999863 2 224577899999999999999999999887754
No 54
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.3e-13 Score=140.61 Aligned_cols=249 Identities=13% Similarity=0.067 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008796 175 ALVDLMVVILGRP---KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT 251 (553)
Q Consensus 175 ~Lv~l~tv~~~~~---~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~ 251 (553)
.-+++..+..... .|++++|.++++++++..++.+.+ .+.. ... ... ....+..+|.++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~---~~~--------~~~---~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK--NNED---EKL--------KEK---LAISLEHTGIFKFL 249 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT--STTC---HHH--------HHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc--Cccc---ccc--------ChH---HHHHHHHHHHHHHH
Confidence 4445555555554 899999999999999973322211 1111 000 011 45667889999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHh
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~ 331 (553)
.|++++|++.+.+++++. |+ +.++..+|.++...|++++|...|.++++...+. ..++.++|.+|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~---~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELF---PR------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN---SSVYYHRGQMNFIL 317 (514)
T ss_dssp SSCHHHHHHHHHHHHHHC---CC------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC---THHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhhC---cc------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC---HHHHHHHHHHHHHh
Confidence 999999999999999863 43 5688999999999999999999999998765432 45789999999999
Q ss_pred CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHH
Q 008796 332 GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTI 407 (553)
Q Consensus 332 Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~ 407 (553)
|++++ +.+++.+... -..++..+|.++...|++++|...+.+++++.. . + ..++..
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~----~~~~~~ 377 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-------------NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-E--A----PEVPNF 377 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-------------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-T--C----SHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-c--C----HHHHHH
Confidence 99887 5555553211 235889999999999999999999999998742 2 1 357889
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH---cCCchHHHHHHHHHHHH
Q 008796 408 LGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ---LGDRGNEMENDEYRRKK 471 (553)
Q Consensus 408 LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~a---lGd~~~A~e~~e~a~~~ 471 (553)
+|.++...|++++|..++++++.+....++......++..+|.++.. .|++++|.+.++.+...
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999988777665556688999999999 99999999999988765
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=9.3e-14 Score=129.46 Aligned_cols=201 Identities=11% Similarity=0.059 Sum_probs=132.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008796 170 KSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVE 249 (553)
Q Consensus 170 ~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~ 249 (553)
..++.+..|+..+..+...|++++|.++++++++. .+. ....+..+|.++
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------~~~--------------------~~~~~~~la~~~ 67 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----------NKE--------------------DAIPYINFANLL 67 (243)
T ss_dssp ------------------------CCTTHHHHHTT----------CTT--------------------CHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----------Ccc--------------------cHHHHHHHHHHH
Confidence 34567778888888889999999999999988764 111 122356788888
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 329 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl 329 (553)
...|++++|++.+.+++++. |+ .+.++..+|.++...|++++|...|.++++...+. ..++.++|.+|.
T Consensus 68 ~~~~~~~~A~~~~~~~~~~~---~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~ 136 (243)
T 2q7f_A 68 SSVNELERALAFYDKALELD---SS-----AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLV 136 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC---Cc-----chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Confidence 99999999999999998773 33 24578889999999999999999999998876432 346778888888
Q ss_pred HhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHH
Q 008796 330 CIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL 405 (553)
Q Consensus 330 ~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL 405 (553)
..|++++ +.+++.+... ...+++.+|.++...|++++|+..+.+++++.. . .+.++
T Consensus 137 ~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~----~~~~~ 196 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVELNEN-------------DTEARFQFGMCLANEGMLDEALSQFAAVTEQDP---G----HADAF 196 (243)
T ss_dssp HTSCHHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT---T----CHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCc-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---c----cHHHH
Confidence 8888776 4444443211 235778888888888888888888888887741 1 13467
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 406 TILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 406 ~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
..+|.++...|++.+|...+++++.+
T Consensus 197 ~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 197 YNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888888888888888888888775
No 56
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.54 E-value=3.8e-13 Score=140.36 Aligned_cols=244 Identities=11% Similarity=0.007 Sum_probs=192.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Q 008796 180 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 259 (553)
Q Consensus 180 ~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl 259 (553)
+........|.+.++...+++|+...++.+.. .+. . ...+ ...+..+..+|.++...|++++|+
T Consensus 200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~---~p~--~-----~~~~------~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSA---NTV--D-----DPLR------ENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CC--C-----HHHH------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---CCC--c-----chhh------HHHHHHHHHHHHHHHhcccHHHHH
Confidence 33344445567777777777777775554332 122 0 1011 114566789999999999999999
Q ss_pred HHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH---
Q 008796 260 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES--- 336 (553)
Q Consensus 260 ~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~--- 336 (553)
+.+.+++++ .|+ ..++..+|..+...|++++|..+|.++++...+ ...++.++|.+|...|++++
T Consensus 264 ~~~~~~~~~---~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 264 VLLQESINL---HPT------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE---YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHHHHHHH---CCC------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhc---CCC------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999986 344 357889999999999999999999999987644 35678999999999999887
Q ss_pred -HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHC
Q 008796 337 -SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL 415 (553)
Q Consensus 337 -~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lal 415 (553)
+.+++.+... ...+++.+|.++...|++++|...+++++++.. . + ..++..+|.++...
T Consensus 332 ~~~~a~~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~--~----~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 332 DFQKAQSLNPE-------------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-T--L----PEVPTFFAEILTDR 391 (537)
T ss_dssp HHHHHHHHCTT-------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T--C----THHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C--C----hHHHHHHHHHHHHh
Confidence 5566554211 235789999999999999999999999998842 1 1 34788999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc----------CCchHHHHHHHHHHHH
Q 008796 416 HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL----------GDRGNEMENDEYRRKK 471 (553)
Q Consensus 416 Gd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~al----------Gd~~~A~e~~e~a~~~ 471 (553)
|++.+|...+++++.+.....+.......+..++.++... |++++|.+.++.+...
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 9999999999999999988888777777778889999999 9999999999988765
No 57
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1e-12 Score=122.79 Aligned_cols=213 Identities=10% Similarity=-0.009 Sum_probs=169.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
++...+..+...|++++|.++++++++. ....+ +. .+ . ...++.++|.++...|+++
T Consensus 40 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~--~~--------~~-~--------~~~~~~~l~~~~~~~~~~~ 96 (258)
T 3uq3_A 40 YLNNRAAAEYEKGEYETAISTLNDAVEQ----GREMR--AD--------YK-V--------ISKSFARIGNAYHKLGDLK 96 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHTT--CC--------HH-H--------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh----Ccccc--cc--------hH-H--------HHHHHHHHHHHHHHcccHH
Confidence 5666777888999999999999999998 33322 11 10 0 3556788999999999999
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 336 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~ 336 (553)
+|++.+.+++++. |+ +.....+|++++|...|.+++... ...+.++.++|.+|...|++++
T Consensus 97 ~A~~~~~~a~~~~---~~-------------~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 97 KTIEYYQKSLTEH---RT-------------ADILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHC---CC-------------HHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcC---ch-------------hHHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHhcCHHH
Confidence 9999999999864 33 234566777899999999887643 3456788999999999999887
Q ss_pred ----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHH
Q 008796 337 ----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 412 (553)
Q Consensus 337 ----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~ 412 (553)
+.+++.+... ...+++.+|.++...|++++|..++.+++++.. . .+.++..+|.++
T Consensus 158 A~~~~~~a~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~------~~~~~~~l~~~~ 217 (258)
T 3uq3_A 158 AVKAYTEMIKRAPE-------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-N------FVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-H------HHHHHHHHHHHH
Confidence 5565554211 247889999999999999999999999998842 1 256789999999
Q ss_pred HHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 008796 413 LALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTAL 451 (553)
Q Consensus 413 lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~l 451 (553)
...|++.+|...+++++.+..+.++.+....+...|+++
T Consensus 218 ~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999999999999998888777766666666653
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=8.7e-14 Score=148.54 Aligned_cols=196 Identities=12% Similarity=-0.019 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhh
Q 008796 238 LMQFLENKVAVELTRSGF-VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSM 316 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~-aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g 316 (553)
.+.++.++|.++...|+| ++|++.+.+|+++ .|+ -+.++..+|.++..+|++++|..+|.+|+++..+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---~p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--- 169 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---EPE-----LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--- 169 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC---
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---
Confidence 345678899999999999 9999999999987 344 2458899999999999999999999999987654
Q ss_pred HHHHHHHHHHHHHHh---------CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHc--------C
Q 008796 317 QAMCHAYAAVSYFCI---------GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ--------Q 375 (553)
Q Consensus 317 ~A~aL~NLA~vyl~~---------Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~q--------G 375 (553)
+.++.++|.+|... |++++ +.+|+++. +. -+.+++++|.++..+ |
T Consensus 170 -~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~------------~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 170 -KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VL------------DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp -HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TT------------CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred -HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CC------------CHHHHHHHHHHHHHHHHhhccccc
Confidence 58999999999998 77665 55555542 11 357899999999999 9
Q ss_pred CHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc
Q 008796 376 DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL 455 (553)
Q Consensus 376 r~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~al 455 (553)
++++|..+|++|+++.- . ....+.++.+||.++...|++++|.+.+++|+.+.. .-..++..++.++...
T Consensus 236 ~~~~A~~~~~~al~~~p-~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDR-K---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP------AWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHHHHHCG-G---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC-C---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHH
Confidence 99999999999999841 1 124567899999999999999999999999998742 2245778999999999
Q ss_pred CCchHHHHHHHHH
Q 008796 456 GDRGNEMENDEYR 468 (553)
Q Consensus 456 Gd~~~A~e~~e~a 468 (553)
|++++|.+.+...
T Consensus 306 g~~~eAi~~~~~~ 318 (474)
T 4abn_A 306 SRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccc
Confidence 9999998876544
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.7e-13 Score=127.68 Aligned_cols=197 Identities=12% Similarity=0.009 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
.+..+..+|.++...|++++|++.+.++++. .|+ .+.++..+|.++...|++++|...|.++++...+ .
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~ 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---NKE-----DAIPYINFANLLSSVNELERALAFYDKALELDSS---A 90 (243)
T ss_dssp --------------------CCTTHHHHHTT---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---Ccc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---c
Confidence 6677889999999999999999999999873 444 2568889999999999999999999999987543 4
Q ss_pred HHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
..++.++|.+|...|++++ +.+++.+... ...+++.+|.++...|++++|...+.+++++..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~- 156 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE- 156 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-
Confidence 6778999999999999887 5555554221 245789999999999999999999999998842
Q ss_pred hccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 394 HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 394 elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
. ...++..+|.++...|++++|...+++++.... ....++..+|.+|...|++++|.+.++.+.+.
T Consensus 157 --~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 157 --N----DTEARFQFGMCLANEGMLDEALSQFAAVTEQDP------GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp --T----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred --c----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 1 245789999999999999999999999987632 22447889999999999999999999988764
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=1e-12 Score=124.00 Aligned_cols=203 Identities=12% Similarity=-0.006 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
.+..+..+|.++...|++++|++.+.+++++ .|+ .+.++..+|.++...|++++|...|.++++...+ .
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~ 104 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI---DPS-----SADAHAALAVVFQTEMEPKLADEEYRKALASDSR---N 104 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---c
Confidence 3566789999999999999999999999987 344 2458899999999999999999999999987543 3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
..++.++|.+|...|++++....+...-... .....+.+++.+|.++...|++++|..++.+++++.. .+
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~ 174 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDT-------LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQ 174 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCT-------TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCc-------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---cc
Confidence 5678999999999999887222222211110 0112578899999999999999999999999998741 12
Q ss_pred hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 398 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 398 r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
..++..+|.++...|++++|...+++++.... ....++..++.++...|++++|.+.++.....
T Consensus 175 ----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 175 ----PSVALEMADLLYKEREYVPARQYYDLFAQGGG------QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999876421 22346788999999999999999988877654
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=1.8e-13 Score=155.10 Aligned_cols=168 Identities=20% Similarity=0.135 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
.+..+.+||.++..+|++++|++.|++|+++ .|+ -+.+++++|.++..+|++++|+.+|++|+++..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---- 75 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---- 75 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence 4566788999999999999999999999887 455 2457888999999999999999999988765321
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
-+.+++++|.++..+|++++|+.+|++|+++.
T Consensus 76 ------------------------------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~------ 107 (723)
T 4gyw_A 76 ------------------------------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN------ 107 (723)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred ------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 23445555555555555555555555555542
Q ss_pred hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 398 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 398 r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
...+.++++||.++..+|++++|++.+++|+.+. +....++..||.++...|++++|.+.++++.++.
T Consensus 108 -P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~------P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 108 -PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 1113345555555555555555555555555441 1123344555555555555555555555554443
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=2.8e-12 Score=117.38 Aligned_cols=198 Identities=11% Similarity=0.041 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
..++..+|.++...|++++|++.+.+++++. |+ -+.++..+|.++...|++++|..+|.++++...+ ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~ 76 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD---PK-----NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD---SA 76 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---cc-----chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---Ch
Confidence 4456788999999999999999999999864 43 1457889999999999999999999999987543 35
Q ss_pred HHHHHHHHHHHHh-CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 319 MCHAYAAVSYFCI-GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 319 ~aL~NLA~vyl~~-Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
.++.++|.+|... |++++ +.+++. .+. . .....+++.+|.++...|++++|..++.+++++..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~--~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 144 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALA--DPT--Y-------PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP- 144 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHT--STT--C-------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcC--C-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 6789999999999 99887 444443 111 1 11567899999999999999999999999998742
Q ss_pred hccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 394 HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 394 elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
.+ ..++..+|.++...|++.+|...+++++.+.. .+. ..++..++.++...|+.++|..+++....
T Consensus 145 --~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 145 --QF----PPAFKELARTKMLAGQLGDADYYFKKYQSRVE--VLQ---ADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp --TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 12 45788999999999999999999999988642 022 22356788899999999998887776543
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=8.9e-13 Score=119.58 Aligned_cols=161 Identities=15% Similarity=0.077 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
+..+||.++..+|+|++|++.+++|+++ .|+- +.++..+|.++..+|++++|...+..++....+ ...+
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~---~p~~-----~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 75 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKA---DPNN-----VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEA 75 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---hHHH
Confidence 3478999999999999999999999987 4552 457889999999999999999999988876544 3567
Q ss_pred HHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 321 HAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
..++|.++...++++. +.+++.+.. . -..+++.+|.++..+|++++|+..|++++++.
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~----- 137 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNT-V------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK----- 137 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-c------------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-----
Confidence 7888999999999876 445544321 1 24678899999999999999999999999883
Q ss_pred ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 397 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 397 dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
...+.++.+||.++..+|++++|..++++|+.+-
T Consensus 138 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 138 --PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 1235688999999999999999999999998763
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=1.3e-12 Score=123.20 Aligned_cols=200 Identities=12% Similarity=-0.002 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 174 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 174 ~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
.+-+++..+..+...|++++|.++++++++. .+. ....+..+|.++...|
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~~~--------------------~~~~~~~la~~~~~~~ 85 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------DPS--------------------SADAHAALAVVFQTEM 85 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCC--------------------hHHHHHHHHHHHHHcC
Confidence 4677788888889999999999999999887 112 1223567888889999
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCC
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 333 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd 333 (553)
++++|++.+.+++++. |+ .+.++..+|.++...|++++|..+|.++++ .........++.++|.+|...|+
T Consensus 86 ~~~~A~~~~~~a~~~~---~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 156 (252)
T 2ho1_A 86 EPKLADEEYRKALASD---SR-----NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKK 156 (252)
T ss_dssp CHHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHC---cC-----cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCC
Confidence 9999999999999873 43 245788999999999999999999999887 33445577889999999999999
Q ss_pred hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHH
Q 008796 334 AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 409 (553)
Q Consensus 334 ~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG 409 (553)
+++ +.+++.+... ...++..+|.++..+|++++|...+++++++.. . ...++..++
T Consensus 157 ~~~A~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~----~~~~~~~~~ 216 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRN-------------QPSVALEMADLLYKEREYVPARQYYDLFAQGGG---Q----NARSLLLGI 216 (252)
T ss_dssp HHHHHHHHHHHHHHCSC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC---C----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---C----cHHHHHHHH
Confidence 887 5555543211 246789999999999999999999999987631 1 235688999
Q ss_pred HHHHHCCChHHHHHHHHHHHHHH
Q 008796 410 NLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 410 ~i~lalGd~~eA~~~l~~AL~LA 432 (553)
.++...|++.+|..++++++.+.
T Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 217 RLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999998763
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=4e-12 Score=122.69 Aligned_cols=185 Identities=17% Similarity=0.105 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccchh
Q 008796 240 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKS 315 (553)
Q Consensus 240 ~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~a----lG~yeeAl~~f~~AL~l~~d~~ 315 (553)
..+..+|.++...|++++|++.+.++++ ++ -+.++..+|.++.. .+++++|..+|.+|++.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----- 71 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD-----LK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----- 71 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----
Confidence 3457889999999999999999999998 22 13578999999999 99999999999999976
Q ss_pred hHHHHHHHHHHHHHH----hCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH----cCCHHHHHHH
Q 008796 316 MQAMCHAYAAVSYFC----IGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNR 383 (553)
Q Consensus 316 g~A~aL~NLA~vyl~----~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~----qGr~~EA~~~ 383 (553)
+.+.++.++|.+|.. .|++++ +.+|+++ +-+.+++++|.++.. .|++++|..+
T Consensus 72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 136 (273)
T 1ouv_A 72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---------------KYAEGCASLGGIYHDGKVVTRDFKKAVEY 136 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---------------CCccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 257889999999999 888776 5555443 134688999999999 9999999999
Q ss_pred HHHHHHHHHHhccChHhHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----c
Q 008796 384 LAKGLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ----L 455 (553)
Q Consensus 384 L~eAL~Lar~elGdr~leA~aL~~LG~i~la----lGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~a----l 455 (553)
|++|+++ ++ ..+...||.++.. .+++.+|..++++|+.. ++ ..+...||.+|.. .
T Consensus 137 ~~~a~~~-----~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 137 FTKACDL-----ND----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KD----SPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp HHHHHHT-----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTCSSC
T ss_pred HHHHHhc-----Cc----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCCCCC
Confidence 9999875 22 4578899999999 99999999999999865 33 3577899999999 9
Q ss_pred CCchHHHHHHHHHHHH
Q 008796 456 GDRGNEMENDEYRRKK 471 (553)
Q Consensus 456 Gd~~~A~e~~e~a~~~ 471 (553)
|++++|.++++.+.+.
T Consensus 200 ~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 200 KNFKEALARYSKACEL 215 (273)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhC
Confidence 9999999999988764
No 66
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=4.9e-13 Score=127.30 Aligned_cols=202 Identities=11% Similarity=-0.003 Sum_probs=164.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
.+..+|.++...|++++|++.+.+++++. |+. +.++..+|.++..+|++++|...|.++++...+....+.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNS-----PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCC-----STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCc-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHH
Confidence 35678888899999999999999998764 441 2267889999999999999999999999855556667888
Q ss_pred HHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 321 HAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
+.++|.+|...|++++ +.+++++... .+.++..+|.++...|++++|..++++++++.
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----- 138 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT-------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT----- 138 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-----
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcc-------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-----
Confidence 9999999999999887 6666654221 23689999999999999999999999999882
Q ss_pred ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHHH
Q 008796 397 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD---RGNEMENDEYRRKKLD 473 (553)
Q Consensus 397 dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd---~~~A~e~~e~a~~~~d 473 (553)
.....++..+|......+++.+|...+++++.+.... ..++..+|.++...|+ +++|...++.+.....
T Consensus 139 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 139 --TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 2235688899955556679999999999999874222 4677889999999999 8899999999998875
Q ss_pred HHh
Q 008796 474 ELQ 476 (553)
Q Consensus 474 ~L~ 476 (553)
...
T Consensus 211 ~~~ 213 (272)
T 3u4t_A 211 PGG 213 (272)
T ss_dssp GGG
T ss_pred ccc
Confidence 433
No 67
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.49 E-value=6.1e-12 Score=121.76 Aligned_cols=215 Identities=7% Similarity=-0.035 Sum_probs=162.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
.++...+.++...|++++|.++++++++. .+. ....+..+|.++...|++
T Consensus 56 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~~~--------------------~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 56 EAWRSLGLTQAENEKDGLAIIALNHARML----------DPK--------------------DIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CcC--------------------CHHHHHHHHHHHHHcCCH
Confidence 34555677788899999999999999887 111 112345667777888888
Q ss_pred HHHHHHHHHHHHHHHHCCchhh-----------------------------------------hhHHHHHHHHHHHHHHc
Q 008796 256 VEAQEALVQMKNWFIRFPTILQ-----------------------------------------ACESMIEMLRGQYAHSV 294 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~-----------------------------------------~~~A~~~~lLG~~~~al 294 (553)
++|++.+.+++++....+.... ...+.++..+|.++...
T Consensus 106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 8888888777765322221100 01256788999999999
Q ss_pred CCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHH
Q 008796 295 GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL 370 (553)
Q Consensus 295 G~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~ 370 (553)
|++++|..+|.++++...+ ...++.++|.+|...|++++ +.+++.+... ...+++.+|.+
T Consensus 186 ~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~l~~~ 249 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRPD---DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-------------YVRVMYNMAVS 249 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------CHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------CHHHHHHHHHH
Confidence 9999999999999987543 35678999999999999887 5555554211 34688999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhccChHh------HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC
Q 008796 371 LMRQQDFQEARNRLAKGLQIAHNHMGNLQL------VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 371 ~~~qGr~~EA~~~L~eAL~Lar~elGdr~l------eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD 437 (553)
+..+|++++|...+++++++.. ...+..+ ...++..+|.++...|++++|..++++++....+..+
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999999999973 4333333 5788999999999999999999999999998876543
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=3.2e-12 Score=115.86 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccc
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 356 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~ 356 (553)
+.++..+|..+..+|+|++|...|++|+++..+ -+.++.++|.+|...|+++. +.+++.....
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---------- 71 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---------- 71 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch----------
Confidence 678999999999999999999999999987543 35688999999999999887 3333332111
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC
Q 008796 357 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 436 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg 436 (553)
.+.++..+|.++...+++++|...+.+++++.. . ...++..+|.++..+|++++|.+.+++++.+-
T Consensus 72 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~---~----~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---- 137 (184)
T 3vtx_A 72 ---SAEAYYILGSANFMIDEKQAAIDALQRAIALNT---V----YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---- 137 (184)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---c----chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc----
Confidence 357889999999999999999999999998842 2 23578899999999999999999999999872
Q ss_pred ChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 437 DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 437 D~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+....++..||.+|...|++++|.+.++.+.+.
T Consensus 138 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 --PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred --chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 233567899999999999999999999998765
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=9.9e-12 Score=113.68 Aligned_cols=200 Identities=10% Similarity=-0.042 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 174 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 174 ~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
.+.++...+..+...|++++|.++++++++. . +. ....+..+|.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~------~~--------------------~~~~~~~l~~~~~~~~ 56 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS----D------PK--------------------NELAWLVRAEIYQYLK 56 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C------TT--------------------CHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----C------cc--------------------chHHHHHHHHHHHHcC
Confidence 4556777788888999999999999999887 1 11 1123567888889999
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhC
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 332 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~al-G~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~G 332 (553)
++++|++.+.+++++. |+ .+.++..+|.++... |++++|...|.++++ .........++.++|.+|...|
T Consensus 57 ~~~~A~~~~~~a~~~~---~~-----~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 57 VNDKAQESFRQALSIK---PD-----SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp CHHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhC---CC-----ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcC
Confidence 9999999999999873 43 245788999999999 999999999999987 3344556788899999999999
Q ss_pred ChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHH
Q 008796 333 DAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 408 (553)
Q Consensus 333 d~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~L 408 (553)
++++ +.+++..... ...++..+|.++...|++++|...+++++++. ...+ ..++..+
T Consensus 128 ~~~~A~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~~~~~~ 188 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQPQ-------------FPPAFKELARTKMLAGQLGDADYYFKKYQSRV--EVLQ----ADDLLLG 188 (225)
T ss_dssp CHHHHHHHHHHHHHHSTT-------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CSCC----HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCC----HHHHHHH
Confidence 9887 5555543211 24678999999999999999999999999874 1122 2346788
Q ss_pred HHHHHHCCChHHHHHHHHHHHHH
Q 008796 409 GNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 409 G~i~lalGd~~eA~~~l~~AL~L 431 (553)
+.++...|+..+|..+++.++..
T Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 189 WKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999998887654
No 70
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=2.2e-12 Score=122.35 Aligned_cols=225 Identities=13% Similarity=0.034 Sum_probs=170.4
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 008796 186 RPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQM 265 (553)
Q Consensus 186 ~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qA 265 (553)
...|++++|+++++++++. . ...+. . ....+.++|.++...|++++|++.+.++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~----~---~~~~~--------~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILAS----R---ALTDD--------E-----------RAQLLYERGVLYDSLGLRALARNDFSQA 69 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTS----S---CCCHH--------H-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhc----c---cccCc--------h-----------hHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4458889988888887765 1 00100 1 4456789999999999999999999999
Q ss_pred HHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHH
Q 008796 266 KNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAI 341 (553)
Q Consensus 266 L~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL 341 (553)
+++ .|+ -+.++..+|.++...|++++|..+|.+|++...+ ...++.++|.+|...|++++ +.+++
T Consensus 70 l~~---~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 70 LAI---RPD-----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHH---CCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHc---CCC-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc---ccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 987 444 2457899999999999999999999999987543 25788999999999999887 66666
Q ss_pred HhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHH
Q 008796 342 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 421 (553)
Q Consensus 342 ~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA 421 (553)
.+.... . . .....+ .....|++++|...+.+++.... .. . ....++.++...++..+|
T Consensus 139 ~~~~~~--------~---~--~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~-~~-~------~~~~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 139 QDDPND--------P---F--RSLWLY-LAEQKLDEKQAKEVLKQHFEKSD-KE-Q------WGWNIVEFYLGNISEQTL 196 (275)
T ss_dssp HHCTTC--------H---H--HHHHHH-HHHHHHCHHHHHHHHHHHHHHSC-CC-S------THHHHHHHHTTSSCHHHH
T ss_pred HhCCCC--------h---H--HHHHHH-HHHHhcCHHHHHHHHHHHHhcCC-cc-h------HHHHHHHHHHHhcCHHHH
Confidence 542221 1 1 222223 33677999999999999988742 21 1 224578888999999999
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 422 REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 422 ~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.+.+++++....+. .+....++..+|.+|...|++++|.+.++.+...
T Consensus 197 ~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 197 MERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccc--cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999988765543 2233678899999999999999999999988754
No 71
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=2.8e-12 Score=134.58 Aligned_cols=215 Identities=6% Similarity=-0.060 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 174 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 174 ~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
++-+|..-+.++...|++++|++.+++++.. .+. -...+.++|.++..+|
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----------~P~--------------------~~~a~~~~g~~l~~~g 145 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL----------NAA--------------------NYTVWHFRRVLLKSLQ 145 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----------Ccc--------------------CHHHHHHHHHHHHHcc
Confidence 5556666777788899999999999999988 122 2344678899999999
Q ss_pred C-HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhC
Q 008796 254 G-FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 332 (553)
Q Consensus 254 r-~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~G 332 (553)
+ +++|++.+.+|+++ .|+ -+.+++++|.++..+|++++|+..|.+|+++.-+ -+.++.++|.++...|
T Consensus 146 ~d~~eAl~~~~~al~l---~P~-----~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~---~~~a~~~lg~~~~~~g 214 (382)
T 2h6f_A 146 KDLHEEMNYITAIIEE---QPK-----NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK---NYHAWQHRQWVIQEFK 214 (382)
T ss_dssp CCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHH---CCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcC
Confidence 7 99999999999987 454 2558999999999999999999999999987543 4578899999999999
Q ss_pred ChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhccChHhHH
Q 008796 333 DAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR-QQDFQEA-----RNRLAKGLQIAHNHMGNLQLVS 402 (553)
Q Consensus 333 d~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~-qGr~~EA-----~~~L~eAL~Lar~elGdr~leA 402 (553)
++++ +++|+++ .+- -+.+++++|.++.. .|.+++| +.++.+|+++. -.+ .
T Consensus 215 ~~~eAl~~~~~al~l-~P~------------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~---P~~----~ 274 (382)
T 2h6f_A 215 LWDNELQYVDQLLKE-DVR------------NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV---PHN----E 274 (382)
T ss_dssp CCTTHHHHHHHHHHH-CTT------------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS---TTC----H
T ss_pred ChHHHHHHHHHHHHh-CCC------------CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC---CCC----H
Confidence 9886 6677664 221 35789999999999 5665888 58999999884 222 4
Q ss_pred HHHHHHHHHHHHCC--ChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q 008796 403 QYLTILGNLALALH--DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG 456 (553)
Q Consensus 403 ~aL~~LG~i~lalG--d~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alG 456 (553)
.+++++|.++...| ++.+|.+.++.+ + ..+.-.+++..||.+|...|
T Consensus 275 ~a~~~l~~ll~~~g~~~~~~a~~~~~~~----~---~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 275 SAWNYLKGILQDRGLSKYPNLLNQLLDL----Q---PSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHHTTTCGGGCHHHHHHHHHH----T---TTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCccchHHHHHHHHHh----c---cCCCCHHHHHHHHHHHHHHh
Confidence 58899999999998 678887776553 1 22333578899999999986
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=2.9e-12 Score=120.38 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
.+.++|.++...|+|++|++.+.+++++... ++ ..++..+|.++..+|++++|..+|.+|++...+ ...+
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~ 78 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QD------SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANA 78 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CC------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHH
Confidence 4678899999999999999999999988531 22 246777999999999999999999999976443 6778
Q ss_pred HHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 321 HAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
+.++|.+|...|++++ +.+++.+.-... ......+.+++.+|.++...|++++|...|++++++.
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----- 147 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA------TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT----- 147 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-----
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-----
Confidence 9999999999999987 667776543220 1122356889999999999999999999999999873
Q ss_pred ChHhHHHHHHHHHHHHHHCCCh
Q 008796 397 NLQLVSQYLTILGNLALALHDT 418 (553)
Q Consensus 397 dr~leA~aL~~LG~i~lalGd~ 418 (553)
.....+.++..||.++...|+.
T Consensus 148 p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 148 SKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHH
Confidence 1111467899999999887765
No 73
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=3.7e-12 Score=131.53 Aligned_cols=208 Identities=10% Similarity=0.019 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCc-hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch--
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT-ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-- 314 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~d-l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~-- 314 (553)
++.+.++||.++..+|++++|++++.+|+++++.... ......+.++.++|.++..+|++++|..+|.+|+++....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3445688999999999999999999999999987432 2223356788999999999999999999999999976542
Q ss_pred ---hhHHHHHHHHHHHHHHhCC--hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHH---HHcCCHHHHHH
Q 008796 315 ---SMQAMCHAYAAVSYFCIGD--AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLL---MRQQDFQEARN 382 (553)
Q Consensus 315 ---~g~A~aL~NLA~vyl~~Gd--~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~---~~qGr~~EA~~ 382 (553)
...+.++.++|+++...|. +++ +++|+++- |. -..++..+|.++ ...|++++|..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~------------~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PK------------NPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TT------------CHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CC------------CHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 2356778888888877664 544 66666542 21 123455555554 45678889999
Q ss_pred HHHHHHHHHHHhccChHhHHHHHHHHHH----HHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCc
Q 008796 383 RLAKGLQIAHNHMGNLQLVSQYLTILGN----LALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDR 458 (553)
Q Consensus 383 ~L~eAL~Lar~elGdr~leA~aL~~LG~----i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~ 458 (553)
.|++|+++. -.+. .+...+|. ++...|++.+|..++++|+.+. +....++..+|.+|...|++
T Consensus 197 ~~~~al~l~---p~~~----~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~------~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 197 PLRQAIRLN---PDNQ----YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA------PGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp HHHHHHHHC---SSCH----HHHHHHHHHHHHCC------CHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhcC---Ccch----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC------ccHHHHHHHHHHHHHHcCch
Confidence 999999883 2232 23444444 4445567778888888887652 23345678899999999999
Q ss_pred hHHHHHHHHHHHH
Q 008796 459 GNEMENDEYRRKK 471 (553)
Q Consensus 459 ~~A~e~~e~a~~~ 471 (553)
++|.+.++.+...
T Consensus 264 ~~A~~~~~~al~~ 276 (472)
T 4g1t_A 264 DKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887764
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.44 E-value=3.8e-12 Score=122.58 Aligned_cols=209 Identities=14% Similarity=0.024 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 240 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 240 ~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
..+..+|.+++..|+|++|++.+.++++.. |+. ...+.++..+|.++..+|+|++|...|.++++...+......
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTH--EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCC--cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456788999999999999999999998764 441 224678999999999999999999999999998876667778
Q ss_pred HHHHHHHHHHH--------hCChHH----HHHHHHhhcccccccccc-----cchhHHHHHHHHHHHHHHHcCCHHHHHH
Q 008796 320 CHAYAAVSYFC--------IGDAES----SSQAIDLIGPVYQMKDTI-----NGVREEASLHFAYGLLLMRQQDFQEARN 382 (553)
Q Consensus 320 aL~NLA~vyl~--------~Gd~e~----~~qAL~L~r~lgd~~g~~-----~~lr~eA~aL~~LG~~~~~qGr~~EA~~ 382 (553)
++.++|.+|.. .|++++ +.+++...-... ..... ......+..++.+|.++..+|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE-LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999 777765 445544322110 00000 0000012334899999999999999999
Q ss_pred HHHHHHHHHHHhccChHhHHHHHHHHHHHHHHC----------CChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 008796 383 RLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL----------HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALY 452 (553)
Q Consensus 383 ~L~eAL~Lar~elGdr~leA~aL~~LG~i~lal----------Gd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly 452 (553)
.|+++++..- +......++..+|.++..+ |++++|...+++++... ++...-..+...|+.++
T Consensus 170 ~~~~~l~~~p----~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 170 TYEAVFDAYP----DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---PDSPLLRTAEELYTRAR 242 (261)
T ss_dssp HHHHHHHHCT----TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC----CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHH
Confidence 9999998742 1233567899999999987 88899999999988654 56666667788888888
Q ss_pred HHcCCchHH
Q 008796 453 QQLGDRGNE 461 (553)
Q Consensus 453 ~alGd~~~A 461 (553)
...|+.+.+
T Consensus 243 ~~~~~~~~~ 251 (261)
T 3qky_A 243 QRLTELEGD 251 (261)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhhhh
Confidence 887776544
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=6.6e-12 Score=142.34 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
+-+|..-+..+...|++++|++++++|++. .+. -...+.+||.++..+|+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----------~P~--------------------~~~a~~nLg~~l~~~g~ 58 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV----------FPE--------------------FAAAHSNLASVLQQQGK 58 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CSC--------------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC--------------------CHHHHHHHHHHHHHcCC
Confidence 456667788889999999999999999988 122 23456899999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCCh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~ 334 (553)
+++|+++|++|+++ .|+ -+.+++++|.++..+|++++|+..|++|+++..+
T Consensus 59 ~~eA~~~~~~Al~l---~P~-----~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--------------------- 109 (723)
T 4gyw_A 59 LQEALMHYKEAIRI---SPT-----FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA--------------------- 109 (723)
T ss_dssp HHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------------
T ss_pred HHHHHHHHHHHHHh---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------
Confidence 99999999999987 455 2558999999999999999999999988865221
Q ss_pred HHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHH
Q 008796 335 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA 414 (553)
Q Consensus 335 e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~la 414 (553)
-+.+++++|.++..+|++++|+..|++||++. ...+.++.+||.++..
T Consensus 110 -------------------------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 110 -------------------------FADAHSNLASIHKDSGNIPEAIASYRTALKLK-------PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHhhhhhHHHh
Confidence 23456666666666666666666666666662 1123456666666666
Q ss_pred CCChHHHHHHHHHHHHHHHH
Q 008796 415 LHDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 415 lGd~~eA~~~l~~AL~LArk 434 (553)
+|++++|.+.+++++++..+
T Consensus 158 ~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTCCTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhChh
Confidence 66666666666666666543
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=2e-11 Score=114.60 Aligned_cols=157 Identities=17% Similarity=0.080 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccc
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 356 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~ 356 (553)
+..+..+|..+...|+|++|...|.+|++...... ..+..++|.+|...|++++ +.+|+.+- | .
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p---------~ 74 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD--SVTAYNCGVCADNIKKYKEAADYFDIAIKKN-Y---------N 74 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-C---------S
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-c---------c
Confidence 46889999999999999999999999998874111 2566779999999999887 55665431 1 1
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC
Q 008796 357 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 436 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg 436 (553)
-+.+++.+|.++..+|++++|...+++++++.-....-....+.++..+|.++...|++++|.+.+++|+.+.
T Consensus 75 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---- 147 (228)
T 4i17_A 75 ---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---- 147 (228)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS----
T ss_pred ---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC----
Confidence 5678999999999999999999999999998531111123456789999999999999999999999999762
Q ss_pred ChHH--HHHHHHHHHHHHHHcCCc
Q 008796 437 DIPT--QIWALSVLTALYQQLGDR 458 (553)
Q Consensus 437 D~~~--qa~aL~~Lg~ly~alGd~ 458 (553)
+. -..++..||.+|...|+.
T Consensus 148 --p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 148 --SKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcccHHHHHHHHHHHHHHHHH
Confidence 23 466888999999988887
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=7.9e-12 Score=133.39 Aligned_cols=193 Identities=9% Similarity=-0.012 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 175 ALVDLMVVILGRPKGLF-KECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~-dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
+-+++..+..+...|++ ++|++++++|++. .+. ....+.++|.++..+|
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----------~p~--------------------~~~a~~~lg~~~~~~g 151 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKL----------EPE--------------------LVEAWNQLGEVYWKKG 151 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhh----------CCC--------------------CHHHHHHHHHHHHHcC
Confidence 45677778888899999 9999999999987 112 1234678999999999
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHccchhhHHHHHHHH
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV---------GCYSEAAFHYVEAAKITESKSMQAMCHAYA 324 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~al---------G~yeeAl~~f~~AL~l~~d~~g~A~aL~NL 324 (553)
++++|++.+.+|+++. |+ +.++..+|.++..+ |++++|..+|++|+++..+ .+.++.++
T Consensus 152 ~~~~A~~~~~~al~~~---p~------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 219 (474)
T 4abn_A 152 DVTSAHTCFSGALTHC---KN------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---DGRSWYIL 219 (474)
T ss_dssp CHHHHHHHHHHHHTTC---CC------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC---CC------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 9999999999999873 55 36899999999999 9999999999999987544 35678999
Q ss_pred HHHHHHh--------CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 325 AVSYFCI--------GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 325 A~vyl~~--------Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
|.+|... |++++ +++|+.+- |. ....+.+++++|.++..+|++++|...|++|+++.-
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RK---------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GG---------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CC---------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999988 77776 66666652 20 012568999999999999999999999999999842
Q ss_pred HhccChHhHHHHHHHHHHHHHHCCChHHHHHHHH
Q 008796 393 NHMGNLQLVSQYLTILGNLALALHDTVQAREILR 426 (553)
Q Consensus 393 ~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~ 426 (553)
. -..++..+|.++..+|++.+|.+.+.
T Consensus 290 ---~----~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 290 ---A----WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp ---T----CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---C----CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 24678899999999998887776543
No 78
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.34 E-value=1.4e-10 Score=109.89 Aligned_cols=225 Identities=12% Similarity=-0.003 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008796 173 VYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR 252 (553)
Q Consensus 173 ~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~ 252 (553)
-.+-++...+..+...|++++|.+++++++.. .+. ....+.++|.++...
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------~~~--------------------~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI----------RPD--------------------MPEVFNYLGIYLTQA 90 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CCC--------------------CHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----------CCC--------------------cHHHHHHHHHHHHHc
Confidence 44667777888889999999999999999987 111 112356788999999
Q ss_pred CCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhC
Q 008796 253 SGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 332 (553)
Q Consensus 253 Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~G 332 (553)
|++++|++.+.+++++. |+ -+.++..+|.++..+|++++|...|.++++...+.. .+. ..++.. ...|
T Consensus 91 ~~~~~A~~~~~~al~~~---~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~--~~~~~~-~~~~ 158 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD---PT-----YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-FRS--LWLYLA-EQKL 158 (275)
T ss_dssp TCHHHHHHHHHHHHHHC---TT-----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHH--HHHHHH-HHHH
T ss_pred cCHHHHHHHHHHHHhcC---cc-----ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-HHH--HHHHHH-HHhc
Confidence 99999999999999874 33 135889999999999999999999999998765543 222 222322 4557
Q ss_pred ChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHH
Q 008796 333 DAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 408 (553)
Q Consensus 333 d~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~L 408 (553)
++++ +.+++....+. .....++.++...+++++|...+.++++... . .....+.++..+
T Consensus 159 ~~~~A~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~~~~l 221 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEKSDKE--------------QWGWNIVEFYLGNISEQTLMERLKADATDNT-S--LAEHLSETNFYL 221 (275)
T ss_dssp CHHHHHHHHHHHHHHSCCC--------------STHHHHHHHHTTSSCHHHHHHHHHHHCCSHH-H--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcc--------------hHHHHHHHHHHHhcCHHHHHHHHHHHhcccc-c--ccccccHHHHHH
Confidence 7765 44444432221 1124577888899999999999999988753 2 222347889999
Q ss_pred HHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 409 GNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 409 G~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
|.++...|++.+|..++++++.+.. .+... .+.++...|++++|.+.+
T Consensus 222 a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~-------~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 222 GKYYLSLGDLDSATALFKLAVANNV--HNFVE-------HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC--TTCHH-------HHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCc--hhHHH-------HHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999997631 12222 244556667777776665
No 79
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.34 E-value=2.2e-11 Score=127.72 Aligned_cols=193 Identities=9% Similarity=-0.078 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHccchhhH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC-YSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~-yeeAl~~f~~AL~l~~d~~g~ 317 (553)
..++.++|.++...|++++|++.+.+++++ .|+ -+.+++.+|.++..+|+ +++|+..|.+|+++.-+ -
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~-----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~ 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAA-----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---N 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---C
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh---Ccc-----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---C
Confidence 344677888889999999999999999976 455 25589999999999997 99999999999987544 4
Q ss_pred HHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
+.++.++|.+|...|++++ +.+|+++- +- -+.+++++|.++...|++++|+.++++++++.
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~------------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-- 230 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQD-AK------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-- 230 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TT------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cc------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Confidence 6789999999999999886 77777652 21 35789999999999999999999999999983
Q ss_pred hccChHhHHHHHHHHHHHHHH-CCChHHH-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC--CchHHHHHH
Q 008796 394 HMGNLQLVSQYLTILGNLALA-LHDTVQA-----REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLG--DRGNEMEND 465 (553)
Q Consensus 394 elGdr~leA~aL~~LG~i~la-lGd~~eA-----~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alG--d~~~A~e~~ 465 (553)
-. -..+++++|.++.. .|...+| .+++++|+.+. +.-..+...++.++...| ++++|.+.+
T Consensus 231 -P~----~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 231 -VR----NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV------PHNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp -TT----CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred -CC----CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 22 35688999999999 5665788 48888888763 222347788999999988 688888777
Q ss_pred HHH
Q 008796 466 EYR 468 (553)
Q Consensus 466 e~a 468 (553)
+..
T Consensus 300 ~~~ 302 (382)
T 2h6f_A 300 LDL 302 (382)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=5.7e-11 Score=104.76 Aligned_cols=165 Identities=10% Similarity=0.049 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
....+.++|.++...|++++|++.+.++++. .|+ .+.++..+|..+...|++++|...|.++++...+ .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~ 75 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDA---DAF-----DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD---N 75 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT---TSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---Ccc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---C
Confidence 4556778899999999999999999888765 333 2457888999999999999999999998876432 3
Q ss_pred HHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
..++.++|.+|...|++++ +.+++.+... ...+++.+|.++...|++++|..++.+++++..
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~- 141 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP- 141 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-
Confidence 4567778888888888776 4444443111 235677888888888888888888888877641
Q ss_pred hccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 008796 394 HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 433 (553)
Q Consensus 394 elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LAr 433 (553)
.+ ..++..+|.++...|++++|..++++++.+..
T Consensus 142 --~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 142 --NE----GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp --TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --cc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 11 45677888888888888888888888877653
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.5e-10 Score=101.96 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccccccccccc
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 355 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~ 355 (553)
.+.++..+|..+...|++++|...|.++++...+ ...++.++|.+|...|++++ +.+++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------- 73 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF---DVDVALHLGIAYVKTGAVDRGTELLERSLADAP---------- 73 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------
Confidence 5678899999999999999999999988765432 36788999999999999887 555554411
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Q 008796 356 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL 435 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl 435 (553)
. ...+++.+|.++...|++++|..++.+++++.. . ...++..+|.++...|++++|.+++++++...
T Consensus 74 ~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 140 (186)
T 3as5_A 74 D---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP---I----NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--- 140 (186)
T ss_dssp T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred C---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc---H----hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---
Confidence 1 356789999999999999999999999998842 1 24678899999999999999999999999873
Q ss_pred CChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 436 YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 436 gD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
+ ....++..+|.++...|++++|.+.++.+....
T Consensus 141 ~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 141 P---NEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred c---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2 224678899999999999999999998887654
No 82
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.28 E-value=5e-10 Score=111.92 Aligned_cols=192 Identities=11% Similarity=-0.050 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 240 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 240 ~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
..+..++..+...|++++|++.++++++.- ..|+ -+.++..+|.++...|++++|+..|.+ .....
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~-~~P~-----~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~ 131 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRS-VDVT-----NTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLE 131 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSC-CCCS-----CHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-cCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHH
Confidence 455667888889999999999998876421 1465 245789999999999999999999985 34456
Q ss_pred HHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 008796 320 CHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM 395 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~el 395 (553)
+..++|.+|...|++++ +.+++.+- |. ......+.++..+ +...|++++|...|+++++.. -
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~-------~~~~~l~~a~~~l---~~~~~~~~eA~~~~~~~l~~~---p 197 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD-ED-------ATLTQLATAWVSL---AAGGEKLQDAYYIFQEMADKC---S 197 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-------CHHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHS---C
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cC-------cHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHhC---C
Confidence 78889999999999887 55555542 21 0100112222222 234589999999999999873 1
Q ss_pred cChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHH-HHHHHHHH
Q 008796 396 GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE-MENDEYRR 469 (553)
Q Consensus 396 Gdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A-~e~~e~a~ 469 (553)
..+.+++++|.++..+|++++|...+++|+.+- +.-..++..+|.++...|++.++ .++++.+.
T Consensus 198 ----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 198 ----PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp ----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 135689999999999999999999999999773 23344688999999999999764 45555543
No 83
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=2.9e-10 Score=107.94 Aligned_cols=194 Identities=10% Similarity=-0.002 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
.+.++|..++..|+|++|++.+.++++. .|+- .....++..+|..+..+|++++|...|.++++...+......+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~---~p~~--~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNR---YPFG--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 4678888999999999999999999986 4441 2235688999999999999999999999999988776666778
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh
Q 008796 321 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 400 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l 400 (553)
+.++|.+|...|.. ....+..++..+..+|++++|+..|+++++..- ......
T Consensus 81 ~~~~g~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P--~~~~a~ 133 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-------------------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP--NSQYTT 133 (225)
T ss_dssp HHHHHHHHHHHHC---------------------------------------CCHHHHHHHHHHHHHHTTCT--TCTTHH
T ss_pred HHHHHHHHHhhhhh-------------------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc--CChhHH
Confidence 89999999775531 011234556666677888888888888877641 111111
Q ss_pred ------------HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 008796 401 ------------VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 468 (553)
Q Consensus 401 ------------eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a 468 (553)
.+.....+|.++...|++.+|...+++++... ++.+....++..+|.+|..+|++++|.+.++..
T Consensus 134 ~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 134 DATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 12233678999999999999999999998764 444445578899999999999999999877644
Q ss_pred H
Q 008796 469 R 469 (553)
Q Consensus 469 ~ 469 (553)
.
T Consensus 211 ~ 211 (225)
T 2yhc_A 211 A 211 (225)
T ss_dssp H
T ss_pred H
Confidence 3
No 84
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.26 E-value=1.1e-09 Score=115.67 Aligned_cols=188 Identities=16% Similarity=0.043 Sum_probs=142.2
Q ss_pred HHHHHHHHHh----hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccc
Q 008796 242 LENKVAVELT----RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 242 LenLg~~~l~----~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~a----lG~yeeAl~~f~~AL~l~~d 313 (553)
..+||.++.. .+++++|++.++++++. ++ +.+...+|..+.. .+++++|..+|++|++.
T Consensus 222 ~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~------~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--- 288 (490)
T 2xm6_A 222 QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GN------SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--- 288 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TC------HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---
Confidence 4566666665 77888888888877653 22 4467788888887 88899999999888753
Q ss_pred hhhHHHHHHHHHHHHHHh-----CChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 008796 314 KSMQAMCHAYAAVSYFCI-----GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ---DFQEARNRLA 385 (553)
Q Consensus 314 ~~g~A~aL~NLA~vyl~~-----Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qG---r~~EA~~~L~ 385 (553)
+...+..++|.+|... +++++ |+..++..... +-..+++++|.++...| ++++|..+|+
T Consensus 289 --~~~~a~~~Lg~~y~~~~~g~~~~~~~---A~~~~~~a~~~--------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 289 --GNSDGQYYLAHLYDKGAEGVAKNREQ---AISWYTKSAEQ--------GDATAQANLGAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp --TCHHHHHHHHHHHHHCBTTBCCCHHH---HHHHHHHHHHT--------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHcCCCCCcCCHHH---HHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 3456778889888876 55554 33332222111 13468899999999877 8999999999
Q ss_pred HHHHHHHHhccChHhHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----cCC
Q 008796 386 KGLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ----LGD 457 (553)
Q Consensus 386 eAL~Lar~elGdr~leA~aL~~LG~i~la----lGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~a----lGd 457 (553)
+|++. |+ +.+++.||.++.. .+++.+|..++++|+.. ++ ..+...||.+|.. .||
T Consensus 356 ~a~~~-----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~----~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 356 KAAAK-----GE----KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----GL----SAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp HHHHT-----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHC-----CC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCCCCC
Confidence 98754 33 5689999999999 89999999999999763 43 4578899999998 899
Q ss_pred chHHHHHHHHHHHHH
Q 008796 458 RGNEMENDEYRRKKL 472 (553)
Q Consensus 458 ~~~A~e~~e~a~~~~ 472 (553)
+++|.++|+.+...-
T Consensus 419 ~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 419 YVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999988765
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=3.4e-10 Score=108.82 Aligned_cols=174 Identities=13% Similarity=0.001 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccccccccccc
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 355 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~ 355 (553)
.+..+..+|..+...|+|++|...|.++++...+......++.++|.+|...|++++ +.+++.+.-..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~-------- 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID-------- 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--------
Confidence 366889999999999999999999999998776666678999999999999999887 55665543211
Q ss_pred chhHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhccChHhHHHHH--------------HHHHHHHH
Q 008796 356 GVREEASLHFAYGLLLMR--------QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYL--------------TILGNLAL 413 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~--------qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL--------------~~LG~i~l 413 (553)
. ....+++.+|.++.. +|++++|+..|++++++.- . + .....++ ..+|.++.
T Consensus 86 ~--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~--~-~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 86 P--RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-N--H-ELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp T--THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-T--C-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-C--c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 146789999999999 9999999999999998852 1 1 1122233 89999999
Q ss_pred HCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc----------CCchHHHHHHHHHHH
Q 008796 414 ALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL----------GDRGNEMENDEYRRK 470 (553)
Q Consensus 414 alGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~al----------Gd~~~A~e~~e~a~~ 470 (553)
..|++.+|...+++++... ++......++..+|.+|..+ |++++|...++...+
T Consensus 160 ~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 9999999999999998753 44444566888999999988 666777777766554
No 86
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.26 E-value=8.8e-10 Score=116.50 Aligned_cols=175 Identities=13% Similarity=0.012 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh----hCCHHHHHHHHH
Q 008796 188 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELT----RSGFVEAQEALV 263 (553)
Q Consensus 188 ~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~----~Gr~aeAl~~l~ 263 (553)
.+++++|.++++++.+. |..+ ....||.++.. .+++++|++.++
T Consensus 56 ~~~~~~A~~~~~~a~~~--------~~~~------------------------a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--------GYTP------------------------AEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--------TCHH------------------------HHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC--------CCHH------------------------HHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 89999999999998653 2211 13445666666 778888888888
Q ss_pred HHHHHHHHCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH----hCChH
Q 008796 264 QMKNWFIRFPTILQACESMIEMLRGQYAHS----VGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC----IGDAE 335 (553)
Q Consensus 264 qAL~L~r~~~dl~~~~~A~~~~lLG~~~~a----lG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~----~Gd~e 335 (553)
+|.+. ++ +.++..+|.++.. .+++++|..+|++|++. +.+.+..+||.+|.. .++++
T Consensus 104 ~a~~~----~~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 104 KAALK----GL------PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-----GRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHT----TC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHC----CC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 77652 22 4466777777777 67788888888877653 345667777777766 34443
Q ss_pred HHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHH
Q 008796 336 SSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 411 (553)
Q Consensus 336 ~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~----qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i 411 (553)
+ |+..++..-+. +-+.+++.+|.++.. .+++++|..+|+++++. |+ ..+...||.+
T Consensus 169 ~---A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~ 228 (490)
T 2xm6_A 169 M---AREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GD----ELGQLHLADM 228 (490)
T ss_dssp H---HHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHH
T ss_pred H---HHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CC----HHHHHHHHHH
Confidence 3 33332222110 123455666666665 56666666666665432 22 2344445555
Q ss_pred HHH----CCChHHHHHHHHHHH
Q 008796 412 ALA----LHDTVQAREILRSSL 429 (553)
Q Consensus 412 ~la----lGd~~eA~~~l~~AL 429 (553)
+.. .+++.+|...+++|+
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHH
Confidence 543 445555555444443
No 87
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.23 E-value=1.3e-09 Score=108.90 Aligned_cols=194 Identities=12% Similarity=-0.032 Sum_probs=137.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
+....+.++...|++++|++.+++.+.. +..+. ...++..+|.++...|+++
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~--------~~~P~--------------------~~~~~~~la~~~~~~g~~~ 118 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSR--------SVDVT--------------------NTTFLLMAASIYFYDQNPD 118 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHS--------CCCCS--------------------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhc--------ccCCC--------------------CHHHHHHHHHHHHHCCCHH
Confidence 3444455666778888887776665543 11222 1223567888899999999
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHH--HHHH--HhC
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAA--VSYF--CIG 332 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA--~vyl--~~G 332 (553)
+|++.+.+ |+ -..++..+|.++..+|++++|...|+++++...+.. ..+++ ++.+ ..|
T Consensus 119 ~Al~~l~~--------~~-----~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----~~~l~~a~~~l~~~~~ 180 (291)
T 3mkr_A 119 AALRTLHQ--------GD-----SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----LTQLATAWVSLAAGGE 180 (291)
T ss_dssp HHHHHHTT--------CC-----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC--------CC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----HHHHHHHHHHHHhCch
Confidence 99999987 44 234788999999999999999999999998864421 22332 2222 224
Q ss_pred ChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHH
Q 008796 333 DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLA 412 (553)
Q Consensus 333 d~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~ 412 (553)
+++ +|+.++++..... .+ -+.+++++|.++..+|++++|...|+++|++. ..-+.+++++|.++
T Consensus 181 ~~~---eA~~~~~~~l~~~---p~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-------p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 181 KLQ---DAYYIFQEMADKC---SP---TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-------SGHPETLINLVVLS 244 (291)
T ss_dssp HHH---HHHHHHHHHHHHS---CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHhC---CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 444 4444444332111 11 35789999999999999999999999999884 22355799999999
Q ss_pred HHCCChHH-HHHHHHHHHHHH
Q 008796 413 LALHDTVQ-AREILRSSLTLA 432 (553)
Q Consensus 413 lalGd~~e-A~~~l~~AL~LA 432 (553)
...|+..+ +.+++++++.+.
T Consensus 245 ~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 245 QHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHTTCCHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHhC
Confidence 99999976 568888888663
No 88
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.22 E-value=2.9e-10 Score=123.61 Aligned_cols=152 Identities=10% Similarity=-0.022 Sum_probs=126.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHC-CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRF-PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~-~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
+.+.+.....+|+|++|+..+++++++.++. |+ .....+.++++||.++..+|+|++|+.++++|+++...
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~------- 383 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFAD-TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK------- 383 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-------
Confidence 3445556678999999999999999999883 33 23457889999999999999999999999977764221
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-hH
Q 008796 321 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQ 399 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd-r~ 399 (553)
.+++. +. ..|.+++++|.+|..+|+|++|..+|++||+|..+..|. +.
T Consensus 384 ----------------------~lG~~-------Hp--~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 384 ----------------------LYHHN-------NA--QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp ----------------------HSCTT-------CH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred ----------------------HcCCC-------CH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 12221 22 279999999999999999999999999999999877786 67
Q ss_pred hHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 400 LVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 400 leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
.++..+..|+.++..+|.+.+|+.+|+.|.+-|
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999997666
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.21 E-value=1.5e-10 Score=129.30 Aligned_cols=197 Identities=12% Similarity=0.005 Sum_probs=149.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 008796 186 RPKGLFKECMQRIQSGMQTIQDALLKLG-ITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 264 (553)
Q Consensus 186 ~~~G~~dka~ky~ekAL~~~~~~l~klG-~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~q 264 (553)
...|++++|++.++++++.. ..+.+ ..+. -...+.++|.++..+|++++|++.+.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~---~~~~~~~~p~--------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~ 458 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGA---LDADGVDFSE--------------------SVELPLMEVRALLDLGDVAKATRKLDD 458 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC----------CCTT--------------------CSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhc---cccccccccc--------------------chhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 78999999999999998321 11111 1122 122356788888999999999999999
Q ss_pred HHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH---HHHHH
Q 008796 265 MKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES---SSQAI 341 (553)
Q Consensus 265 AL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~---~~qAL 341 (553)
++++. |+ -+.+++++|.++..+|++++|..+|++|+++.-+ .+.++.|+|.+|...|++++ +++|+
T Consensus 459 al~~~---p~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~lg~~~~~~g~~~~~~~~~~al 527 (681)
T 2pzi_A 459 LAERV---GW-----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG---ELAPKLALAATAELAGNTDEHKFYQTVW 527 (681)
T ss_dssp HHHHH---CC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CSHHHHHHHHHHHHHTCCCTTCHHHHHH
T ss_pred HhccC---cc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99873 44 2558999999999999999999999999987643 35678899999999999887 66666
Q ss_pred HhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHH
Q 008796 342 DLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQA 421 (553)
Q Consensus 342 ~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA 421 (553)
++- +. -+.+++++|.++..+|++++|+..|++|+++. ..-+.++.++|.+++..|++.+|
T Consensus 528 ~~~-P~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 528 STN-DG------------VISAAFGLARARSAEGDRVGAVRTLDEVPPTS-------RHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHC-TT------------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-------TTHHHHHHHHHHHTC-------C
T ss_pred HhC-Cc------------hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-------cccHHHHHHHHHHHHccCCCCCC
Confidence 642 21 34689999999999999999999999998874 23356788999999888887776
Q ss_pred -HHHHHHHHHHHHHhC
Q 008796 422 -REILRSSLTLAKKLY 436 (553)
Q Consensus 422 -~~~l~~AL~LArklg 436 (553)
.+.+++|+....++.
T Consensus 588 ~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 588 TEEQIRDAARRVEALP 603 (681)
T ss_dssp CHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHhhCC
Confidence 788888888887774
No 90
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.20 E-value=4.7e-10 Score=121.91 Aligned_cols=131 Identities=9% Similarity=-0.069 Sum_probs=110.9
Q ss_pred HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-hHhHHHHHHHHHHHHHHC
Q 008796 337 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALAL 415 (553)
Q Consensus 337 ~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd-r~leA~aL~~LG~i~lal 415 (553)
++++|++...+.... +. ..+.+++++|.+|..+|+|++|..+++++|++..+..|. +..+|.++++||.+|..+
T Consensus 332 ~~~aL~~~~~~lg~~---Hp--~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~ 406 (490)
T 3n71_A 332 CRECLEKQEPVFADT---NL--YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA 406 (490)
T ss_dssp HHHHHHHHTTTBCTT---SH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCC---CH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC
Confidence 445555555543211 22 379999999999999999999999999999999877776 678899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 416 HDTVQAREILRSSLTLAKKL--YDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 416 Gd~~eA~~~l~~AL~LArkl--gD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
|++++|+.++++||++.++. .|++.-+.....|+.++..+|.+.+|...|.++...+
T Consensus 407 G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 407 GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887 4578888899999999999999999999888875433
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=4.5e-10 Score=105.78 Aligned_cols=178 Identities=11% Similarity=0.035 Sum_probs=130.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH---HcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 178 DLMVVILGRPKGLFKECMQRIQSGMQTIQDALL---KLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 178 ~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~---klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
.+..+......|++++|+.+++++++.--+... ..|.... .. +...+..++|.++..+|+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------~~---------~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKN--------SE---------ISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTT--------SH---------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcch--------hh---------hhHHHHHHHHHHHHHCCC
Confidence 455677778899999999999999987211110 0111111 00 122334679999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCCh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~ 334 (553)
+++|++.+.+++++ .|+- +.++..+|.++..+|++++|...|++++++..+ -+.++.++|.+|...|+.
T Consensus 70 ~~~A~~~~~~al~~---~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 70 YDKAYLFYKELLQK---APNN-----VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD---NLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHhHH
Confidence 99999999999987 4552 458899999999999999999999999987543 356889999999887764
Q ss_pred HHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 335 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 335 e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
+. ..+...+..+... . ....+++..|.++...|+|++|+.+|++|+++.
T Consensus 139 ~~-~~~~~~~~~~~~~-----~--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 139 EK-KKLETDYKKLSSP-----T--KMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HH-HHHHHHHC---CC-----C--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HH-HHHHHHHHHHhCC-----C--chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 42 2333333333111 1 134578899999999999999999999999884
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.17 E-value=3.6e-09 Score=100.43 Aligned_cols=189 Identities=10% Similarity=0.025 Sum_probs=137.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Q 008796 177 VDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFV 256 (553)
Q Consensus 177 v~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~a 256 (553)
+++..+..+...|+|++|++++++++.. .+.. +. ....+.++|.++..+|+++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~---------~p~~---------~~---------~~~a~~~lg~~~~~~~~~~ 58 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNR---------YPFG---------PY---------SQQVQLDLIYAYYKNADLP 58 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTS---------TT---------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCC---------hH---------HHHHHHHHHHHHHhcCCHH
Confidence 4555667788899999999999998876 1111 00 2334677899999999999
Q ss_pred HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHccchhhHH
Q 008796 257 EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS------------------VGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 257 eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~a------------------lG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
+|++.+.++++.+-..+. ...++..+|..+.. .|++++|...|.++++...+.....
T Consensus 59 ~A~~~~~~~l~~~P~~~~-----~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 59 LAQAAIDRFIRLNPTHPN-----IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHHHHHHHHHHCTTCTT-----HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred HHHHHHHHHHHHCcCCCc-----HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 999999999987544333 34567777777665 5789999999998887765533322
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh
Q 008796 319 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL 398 (553)
Q Consensus 319 ~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr 398 (553)
.++..++.+... .+.....+|.++..+|++++|+..|+++++..- ++
T Consensus 134 ~a~~~l~~~~~~-----------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p---~~- 180 (225)
T 2yhc_A 134 DATKRLVFLKDR-----------------------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP---DT- 180 (225)
T ss_dssp HHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST---TS-
T ss_pred HHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc---CC-
Confidence 333333322211 234457789999999999999999999998852 22
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLT 430 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~ 430 (553)
.....++..+|.++..+|++++|.+.++.+..
T Consensus 181 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 181 QATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 33457899999999999999999999886543
No 93
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=1.1e-09 Score=103.75 Aligned_cols=180 Identities=16% Similarity=0.051 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCC-h
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD-A 334 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd-~ 334 (553)
.+|++.++++.+. ++ +.++..+|.++...+++++|..+|++|++. +.+.+..+||.+|.. |. .
T Consensus 3 ~eA~~~~~~aa~~----g~------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~~~a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----GD------RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GDGDALALLAQLKIR-NPQQ 66 (212)
T ss_dssp -CTTHHHHHHHHT----TC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHTTS-STTS
T ss_pred chHHHHHHHHHHC----CC------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHc-CCCC
Confidence 3566667776643 33 568899999999999999999999999864 457889999999998 51 1
Q ss_pred HHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHH
Q 008796 335 ESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGN 410 (553)
Q Consensus 335 e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~----qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~ 410 (553)
..+.+|+..++..-+. +-+.+++++|.++.. .+++++|..+|++|++. |+....+.+.++||.
T Consensus 67 ~~~~~A~~~~~~A~~~--------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 67 ADYPQARQLAEKAVEA--------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SESDAAVDAQMLLGL 133 (212)
T ss_dssp CCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CCCcchHHHHHHHHH
Confidence 1244555555544111 246789999999998 89999999999999654 443355778999999
Q ss_pred HHHH----CCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc-C-----CchHHHHHHHHHHHH
Q 008796 411 LALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQL-G-----DRGNEMENDEYRRKK 471 (553)
Q Consensus 411 i~la----lGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~al-G-----d~~~A~e~~e~a~~~ 471 (553)
+|.. .+|+.+|..++++|+.+ -++.. +...||.+|... | ++++|..+++.+.+.
T Consensus 134 ~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~----a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 134 IYASGVHGPEDDVKASEYFKGSSSL---SRTGY----AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHT---SCTTH----HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHc---CCCHH----HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 9999 89999999999999765 23332 678999999764 3 899999999888765
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.14 E-value=1.4e-10 Score=129.71 Aligned_cols=191 Identities=15% Similarity=0.034 Sum_probs=146.7
Q ss_pred HhhCCHHHHHHHHHHHHHHH-----HHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWF-----IRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYA 324 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~-----r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NL 324 (553)
...|++++|++.+.++++.. ...|+ -+.++..+|..+..+|++++|...|.+|++...+ .+.++.++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-----SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---RWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-----CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-----chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---hHHHHHHH
Confidence 77899999999999998322 23344 2458899999999999999999999999987543 36789999
Q ss_pred HHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh
Q 008796 325 AVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 400 (553)
Q Consensus 325 A~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l 400 (553)
|.+|...|++++ +++|+++- |. -+.+++++|.++..+|++++ ...|++|+++. ..
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~-P~------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~ 532 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF-PG------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DG 532 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TT------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CC------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------Cc
Confidence 999999999887 66776652 21 24688999999999999999 99999999984 12
Q ss_pred HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHHHHH
Q 008796 401 VSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE-MENDEYRRKKLDEL 475 (553)
Q Consensus 401 eA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A-~e~~e~a~~~~d~L 475 (553)
.+.++++||.++..+|++++|.+.+++|+.+. +.-..++..+|.++...|+++++ .+.++.+.+....+
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPTS------RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS------TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC------cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 24588999999999999999999999998763 33455778889998877775555 55666666655554
No 95
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.12 E-value=1.8e-09 Score=94.41 Aligned_cols=106 Identities=17% Similarity=0.235 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhH
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 359 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~ 359 (553)
.|.++..+|..+...|+|++|+.+|.+|+++ .|.
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----------------------------------~p~------------ 40 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----------------------------------DPS------------ 40 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------CTT------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------CCC------------
Confidence 4667777777777777777777777766643 121
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
-+.+++++|.++..+|+|++|+..+.+|+++......+....+.++.+||.++..+|++.+|.+.+++||..
T Consensus 41 ~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 41 NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356889999999999999999999999999986555567788999999999999999999999999999975
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=2.3e-10 Score=102.90 Aligned_cols=147 Identities=10% Similarity=0.005 Sum_probs=94.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHH
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 323 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~N 323 (553)
+||.++..+|++++|++.+.+++..-... +..+..+|.++..+|+|++|..+|.+|+++..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~--------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p----------- 62 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK--------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQE----------- 62 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH--------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------
Confidence 35666677778888887777777654332 33556778888888888888888887765421
Q ss_pred HHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHH
Q 008796 324 AAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ 403 (553)
Q Consensus 324 LA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~ 403 (553)
- -+.+++++|.++..+|++++|..+|++++++. ..-..
T Consensus 63 -----------------------~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~ 100 (150)
T 4ga2_A 63 -----------------------R------------DPKAHRFLGLLYELEENTDKAVECYRRSVELN-------PTQKD 100 (150)
T ss_dssp -----------------------T------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHH
T ss_pred -----------------------C------------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-------CCCHH
Confidence 1 24567777777777888888888888877773 11244
Q ss_pred HHHHHHHHHHHCCChHHHHHH-HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC
Q 008796 404 YLTILGNLALALHDTVQAREI-LRSSLTLAKKLYDIPTQIWALSVLTALYQQLGD 457 (553)
Q Consensus 404 aL~~LG~i~lalGd~~eA~~~-l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd 457 (553)
++..||.++...|++.+|... +++|+.+. + .-..++...+.++...|+
T Consensus 101 ~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P---~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 101 LVLKIAELLCKNDVTDGRAKYWVERAAKLF---P---GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---T---TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhC---c---CCHHHHHHHHHHHHHhCc
Confidence 677788888888777665544 47777663 1 122345666667766664
No 97
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.09 E-value=1.9e-09 Score=94.27 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC-C
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY-D 437 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg-D 437 (553)
+.|.++.++|.+++.+|+|++|+.+|++|+++. ...+.+++++|.++..+|++.+|++.+++|+.+..+.. +
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 478999999999999999999999999999984 12356899999999999999999999999999988765 4
Q ss_pred hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 438 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 438 ~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
....+.++..+|.++...|++++|.+.|+.+...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677889999999999999999999999887653
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.08 E-value=2e-09 Score=101.35 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchh--------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTIL--------QACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~--------~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d 313 (553)
+...|...+..|++++|++.+.+++++.-..++.. ....+.+.+.+|.++..+|++++|...|.+|+++..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 45678888999999999999999998743332210 0111223333888888888888888888877765432
Q ss_pred hhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHH--HHHHHHHHH
Q 008796 314 KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQ--EARNRLAKG 387 (553)
Q Consensus 314 ~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~--EA~~~L~eA 387 (553)
-..++.++|.+|...|++++ +++++++ .|. -+.+++++|.+++.+|+.. +|...+.++
T Consensus 87 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 87 ---NVDCLEACAEMQVCRGQEKDALRMYEKILQL-EAD------------NLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC------------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 23455666666666666554 4444443 111 2345666666665554322 223333332
Q ss_pred HHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 388 LQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 388 L~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
+. ..-...+...+|.++...|++.+|..++++|+.+
T Consensus 151 ~~--------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 151 SS--------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp -C--------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred hC--------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 11 1111234455566666666666666666666654
No 99
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.07 E-value=1e-08 Score=101.85 Aligned_cols=188 Identities=13% Similarity=0.065 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCCh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~ 334 (553)
+++|.+.+++|++.+ .|+ -..++..+|.+....|++++|...|++|+++..+. ...++.++|.++...|++
T Consensus 80 ~~~A~~~~~rAl~~~--~p~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~ 150 (308)
T 2ond_A 80 SDEAANIYERAISTL--LKK-----NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--PTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp HHHHHHHHHHHHTTT--TTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC--THHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHh--Ccc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC--ccHHHHHHHHHHHHhcCH
Confidence 499999999999832 344 24588899999999999999999999999854322 123788999999999998
Q ss_pred HH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHH
Q 008796 335 ES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR-QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILG 409 (553)
Q Consensus 335 e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~-qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG 409 (553)
++ +.+|+.+- +. ...++...|..... .|++++|+..|++++++.- . .+.++..+|
T Consensus 151 ~~A~~~~~~a~~~~-p~------------~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~------~~~~~~~~~ 210 (308)
T 2ond_A 151 KSGRMIFKKAREDA-RT------------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-D------IPEYVLAYI 210 (308)
T ss_dssp HHHHHHHHHHHTST-TC------------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-T------CHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------cHHHHHHHH
Confidence 86 55554421 11 12344445554333 7999999999999999852 1 256789999
Q ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 410 NLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 410 ~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
.++...|++.+|+..+++|+.... + ++.........++..+...|+.++|...++++....-
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~-l-~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSGS-L-PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSSS-S-CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhccC-C-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 999999999999999999986410 0 1112233456677888899999999988887776554
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=1.6e-09 Score=107.45 Aligned_cols=162 Identities=14% Similarity=0.049 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHH
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~a 320 (553)
.+..+|...+..|++++|++.+++++++ .|+ -+.++..+|.++...|++++|...|.++++... .....
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~-----~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~~~~~ 187 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQL---SNQ-----NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---DTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTS-----CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---SHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCc-----chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---chHHH
Confidence 4567888889999999999999999876 455 245889999999999999999999998876544 33456
Q ss_pred HHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 321 HAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
..+.+..+...|+.++ +.+++++ .|- -..+++++|.++...|++++|...|++++++.- .
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~-~P~------------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p-~-- 251 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAE-NPE------------DAALATQLALQLHQVGRNEEALELLFGHLRXDL-T-- 251 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHH-CTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T--
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhc-CCc------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-c--
Confidence 6677777777777654 5666554 221 356899999999999999999999999999842 1
Q ss_pred ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 397 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 397 dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
...+.+..+||.++...|+..+|...++++|..
T Consensus 252 --~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 252 --AADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp --GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --cccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 233567899999999999999999999999875
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=1.6e-09 Score=116.86 Aligned_cols=152 Identities=11% Similarity=0.018 Sum_probs=111.6
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHh
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~ 331 (553)
.|++++|++.+++++++. |+ .+.++..+|..+...|++++|..+|++|++...+ .+.++.++|.+|...
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQ-----DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQ 70 (568)
T ss_dssp ----------------------C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHC
Confidence 588999999999998873 33 2458899999999999999999999999986543 367889999999999
Q ss_pred CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHH
Q 008796 332 GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTI 407 (553)
Q Consensus 332 Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~ 407 (553)
|++++ +++|+++. +. -+.+++++|.++..+|++++|..+|++++++.- .+ ..++.+
T Consensus 71 g~~~~A~~~~~~al~~~-p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~ 130 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAA-PE------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP---EE----PYITAQ 130 (568)
T ss_dssp TCHHHHHHHHHHHHHHC-TT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHH
Confidence 99887 66666652 11 357899999999999999999999999999842 22 467899
Q ss_pred HHHHHHHC---CChHHHHHHHHHHHHHHHH
Q 008796 408 LGNLALAL---HDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 408 LG~i~lal---Gd~~eA~~~l~~AL~LArk 434 (553)
||.++..+ |++++|.+.+++++.....
T Consensus 131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 99999999 9999999999999987544
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.04 E-value=4.1e-09 Score=97.05 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
+..+.++|.++...|++++|++.+.+++ .|+ +.++..+|.++..+|++++|...|.+|++..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------- 67 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ-----DPH------SRICFNIGCMYTILKNMTEAEKAFTRSINRD------- 67 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 3445566777777777777777776663 111 3466677777777777777777776555321
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc--
Q 008796 319 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-- 396 (553)
Q Consensus 319 ~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG-- 396 (553)
+. .+.+++++|.++..+|++++|...|++++++.. ...
T Consensus 68 ---------------------------~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~ 107 (213)
T 1hh8_A 68 ---------------------------KH------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR-GNQLI 107 (213)
T ss_dssp ---------------------------TT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCSEE
T ss_pred ---------------------------cc------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CccHH
Confidence 11 346789999999999999999999999999863 332
Q ss_pred --------ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 397 --------NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 397 --------dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
.....+.++.++|.++...|++.+|...++.|+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 334457889999999999999999999999998764
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=2.3e-09 Score=97.70 Aligned_cols=160 Identities=11% Similarity=0.018 Sum_probs=118.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
+..+|.+++..|++++|+..+++++++.-.+ +.++..+|.++...|++++|...|.++++...+ . ...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~---~~~ 76 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR--------GDVKLAKADCLLETKQFELAQELLATIPLEYQD-N---SYK 76 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC-H---HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC-h---HHH
Confidence 4567778899999999999999999875433 448899999999999999999999988765441 1 122
Q ss_pred HHHHHHHH-Hh-CChHH---HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 322 AYAAVSYF-CI-GDAES---SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 322 ~NLA~vyl-~~-Gd~e~---~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
..++.+.. .. +..+. +.+++++ .|. -..+++++|.++...|++++|+..|++++++.- .
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al~~-~P~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~-- 140 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQELAA-NPD------------NFELACELAVQYNQVGRDEEALELLWNILKVNL-G-- 140 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHH-STT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-T--
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHh-CCC------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-c--
Confidence 22333322 22 22211 6666653 121 347889999999999999999999999987731 1
Q ss_pred ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 397 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 397 dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
.....++..||.++..+|+.++|...|+++|.-
T Consensus 141 --~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 141 --AQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp --TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred --cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 223457889999999999999999999998753
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=3e-08 Score=98.28 Aligned_cols=168 Identities=10% Similarity=0.032 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
...+..+|..+...|++++|...|+++++...+ .+.++.++|.+|...|++++... .++.+.... .+ -
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~---~l~~~~~~~---p~---~ 184 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEA---VLXTIPLQD---QD---T 184 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHH---HHTTSCGGG---CS---H
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHH---HHHhCchhh---cc---h
Confidence 457788999999999999999999999987654 35689999999999999886433 344332111 11 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
.......+..+..+|+.++|...|++++++. ..-..++..||.++...|++++|.+.+++++..... ..
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~----~~ 253 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN-------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT----AA 253 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----GG
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc----cc
Confidence 4667778888999999999999999999884 223458899999999999999999999999987322 22
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 441 QIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 441 qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
...+...|+.++...|+.++|...|+++...
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3557789999999999999999999887653
No 105
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.96 E-value=1.7e-08 Score=88.35 Aligned_cols=141 Identities=11% Similarity=-0.017 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
.+..+.++|.++...|++++|++.+.+++++. |+ -+.++..+|.++..+|++++|...|.++++...+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---- 79 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN---PS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK---- 79 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----
Confidence 55667888888888888888888888888763 33 1457778888888888888888888877654211
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
-..+++.+|.++...|++++|..++.+++++.. .+
T Consensus 80 ------------------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p---~~ 114 (166)
T 1a17_A 80 ------------------------------------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKP---HD 114 (166)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TC
T ss_pred ------------------------------------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CC
Confidence 234667778888888888888888888877642 12
Q ss_pred hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC
Q 008796 398 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 398 r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD 437 (553)
..+.....++..+...|++.+|...+..+..+......
T Consensus 115 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 115 --KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence 22334455666677778888888888777777666543
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.95 E-value=9.2e-09 Score=94.68 Aligned_cols=138 Identities=13% Similarity=0.043 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 317 QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 317 ~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
.+..+.++|.++...|++++ |+..+....+. .+.+++++|.++..+|++++|...|.+++++..
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~---A~~~~~~a~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---- 68 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKG---ALDAFSAVQDP---------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---- 68 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHH---HHHHHHTSSSC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHHHhCCHHH---HHHHHHHHcCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----
Confidence 34455666666666666554 22233332111 246899999999999999999999999998841
Q ss_pred ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC----------ChHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 008796 397 NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY----------DIPTQIWALSVLTALYQQLGDRGNEMENDE 466 (553)
Q Consensus 397 dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg----------D~~~qa~aL~~Lg~ly~alGd~~~A~e~~e 466 (553)
..+.++.++|.++...|++++|...+++++.+..+.. ..+....++..+|.+|...|++++|.+.++
T Consensus 69 ---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 69 ---HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 2256889999999999999999999999999866544 445567889999999999999999999999
Q ss_pred HHHHHHH
Q 008796 467 YRRKKLD 473 (553)
Q Consensus 467 ~a~~~~d 473 (553)
.+.....
T Consensus 146 ~al~~~p 152 (213)
T 1hh8_A 146 LATSMKS 152 (213)
T ss_dssp HHHTTCC
T ss_pred HHHHcCc
Confidence 8876543
No 107
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.94 E-value=8.4e-10 Score=116.99 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=130.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH---HH
Q 008796 181 VVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF---VE 257 (553)
Q Consensus 181 tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~---ae 257 (553)
.+.....+|++++|.++++++.+. |+.+. +.+||.++...|++ ++
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--------g~~~A------------------------~~~Lg~~y~~~g~~~d~~~ 56 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--------GYSEA------------------------QVGLADIQVGTRDPAQIKQ 56 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------TCCTG------------------------GGTCC--------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--------CCHHH------------------------HHHHHHHHHccCCCCCHHH
Confidence 345556789999999999987543 44444 23455555777888 89
Q ss_pred HHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHccchh-----------------
Q 008796 258 AQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-----CYSEAAFHYVEAAKITESKS----------------- 315 (553)
Q Consensus 258 Al~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG-----~yeeAl~~f~~AL~l~~d~~----------------- 315 (553)
|++.|++|++. .|+ ++..+|.+....+ ++++|..+|++|++. ++..
T Consensus 57 A~~~~~~A~~~---~~~--------A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 57 AEATYRAAADT---SPR--------AQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp -------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCT
T ss_pred HHHHHHHHHhC---CHH--------HHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCC
Confidence 99999888865 333 5677888555555 788999999998872 1111
Q ss_pred --------------hHHHHHHHHHHHHHHhCChHH-HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcC---CH
Q 008796 316 --------------MQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ---DF 377 (553)
Q Consensus 316 --------------g~A~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qG---r~ 377 (553)
+.+.+..++|.+|...|.+++ ...+..+.+.... ++ ..+++++|.++...| ++
T Consensus 125 ~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-----~~----~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 125 NVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-----TT----DICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp TCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-----TC----TTHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-----CC----HHHHHHHHHHHHHcCCcccH
Confidence 112234444444444444443 3333333332210 12 238899999999999 99
Q ss_pred HHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHC----CChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH-H
Q 008796 378 QEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL----HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTAL-Y 452 (553)
Q Consensus 378 ~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lal----Gd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~l-y 452 (553)
++|...|++|.+. | ...++.+++||.++... +|+.+|...+++|. ++-..+...||.+ |
T Consensus 196 ~~A~~~~~~aa~~-----g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---------~g~~~a~~~Lg~~~~ 259 (452)
T 3e4b_A 196 AELLKQMEAGVSR-----G--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---------PGYPASWVSLAQLLY 259 (452)
T ss_dssp HHHHHHHHHHHHT-----T--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---------GGSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-----C--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---------CCCHHHHHHHHHHHH
Confidence 9999999988655 2 23456678999998665 68889999988885 2334577889998 5
Q ss_pred --HHcCCchHHHHHHHHHHH
Q 008796 453 --QQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 453 --~alGd~~~A~e~~e~a~~ 470 (553)
...|++++|.++|+.+.+
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHH
Confidence 678999999999998764
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=7.3e-09 Score=111.68 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 008796 188 KGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKN 267 (553)
Q Consensus 188 ~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~ 267 (553)
.|++++|.++++++++. .+. ....+.++|.++..+|++++|++.++++++
T Consensus 2 ~g~~~~A~~~~~~al~~----------~p~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 51 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----------RPQ--------------------DFVAWLMLADAELGMGDTTAGEMAVQRGLA 51 (568)
T ss_dssp -----------------------------C--------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHh----------CCC--------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999998876 112 123467889999999999999999999998
Q ss_pred HHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHh
Q 008796 268 WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDL 343 (553)
Q Consensus 268 L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L 343 (553)
+ .|+ -+.++..+|.++..+|++++|..+|++|++...+ .+.++.++|.+|...|++++ +++++++
T Consensus 52 ~---~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 52 L---HPG-----HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp T---STT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h---CCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6 344 2558899999999999999999999999987543 36788999999999999887 6666655
Q ss_pred hcccccccccccchhHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHH
Q 008796 344 IGPVYQMKDTINGVREEASLHFAYGLLLMRQ---QDFQEARNRLAKGLQIA 391 (553)
Q Consensus 344 ~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~q---Gr~~EA~~~L~eAL~La 391 (553)
... -..++.++|.++..+ |++++|...+++++++.
T Consensus 121 ~p~-------------~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 121 LPE-------------EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CTT-------------CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred CCC-------------CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 211 346889999999999 99999999999999985
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=1.1e-07 Score=90.01 Aligned_cols=159 Identities=12% Similarity=-0.017 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHccchhhH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG----CYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG----~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
+.+||.++...+++++|++.+++|++. ++ +.+++.+|.++.. + ++++|..+|++|++. +.
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-----g~ 84 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQ----GD------GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-----GS 84 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT----TC------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-----TC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc----CC------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-----CC
Confidence 567888888899999999999999763 33 5688899999887 7 999999999999753 56
Q ss_pred HHHHHHHHHHHHH----hCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFC----IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQ 389 (553)
Q Consensus 318 A~aL~NLA~vyl~----~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~----qGr~~EA~~~L~eAL~ 389 (553)
+.+..+||.+|.. .++ +.+|+..++..-+. +...+.+.+++++|.+|.. .+++++|..+|++|++
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATD---VAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCC---HHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccC---HHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 7889999999976 444 44555555544221 1101237899999999999 8999999999999976
Q ss_pred HHHHhccChHhHHHHHHHHHHHHHHC-C-----ChHHHHHHHHHHHHH
Q 008796 390 IAHNHMGNLQLVSQYLTILGNLALAL-H-----DTVQAREILRSSLTL 431 (553)
Q Consensus 390 Lar~elGdr~leA~aL~~LG~i~lal-G-----d~~eA~~~l~~AL~L 431 (553)
+ -|+ +.+..+||.+|..- | |+.+|..+++.|...
T Consensus 158 ~----~~~----~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 158 L----SRT----GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp T----SCT----THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred c----CCC----HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5 133 23689999999865 3 899999999999765
No 110
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.92 E-value=2e-08 Score=106.40 Aligned_cols=185 Identities=12% Similarity=-0.015 Sum_probs=140.2
Q ss_pred HHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHccch
Q 008796 242 LENKVAVELTRS---GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV----GCYSEAAFHYVEAAKITESK 314 (553)
Q Consensus 242 LenLg~~~l~~G---r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~al----G~yeeAl~~f~~AL~l~~d~ 314 (553)
..+||.++...| ++.+|++.+++|.+.- +. .+..++.+|.++... +++++|..+|++|+
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~-----~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa------ 244 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVSRG---TV-----TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA------ 244 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CS-----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG------
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CH-----HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc------
Confidence 457788888899 9999999999887642 22 355678899998665 69999999999886
Q ss_pred hhHHHHHHHHHHHHH---HhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcC-----CHHHHHHHHHH
Q 008796 315 SMQAMCHAYAAVSYF---CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-----DFQEARNRLAK 386 (553)
Q Consensus 315 ~g~A~aL~NLA~vyl---~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qG-----r~~EA~~~L~e 386 (553)
.+-+.+..++|.+|. ..|+ +.+|+..++..-+ .+-+.+++++|.+|. .| ++++|..+|++
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d---~~~A~~~~~~Aa~--------~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGD---VEQMMKYLDNGRA--------ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCC---HHHHHHHHHHHHH--------TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHH--------CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 566788999999954 3444 4455555554311 114578999999998 67 99999999999
Q ss_pred HHHHHHHhccChHhHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----cCCc
Q 008796 387 GLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ----LGDR 458 (553)
Q Consensus 387 AL~Lar~elGdr~leA~aL~~LG~i~la----lGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~a----lGd~ 458 (553)
|. .|+ +.+.++||.+|.. ..|+.+|...+++|.. .|+. .+...||.+|.. ..|+
T Consensus 313 Aa------~g~----~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----~g~~----~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 313 AV------GRE----VAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR----NGQN----SADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp TT------TTC----HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT----TTCT----THHHHHHHHHHSCTTBCCCH
T ss_pred Hh------CCC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh----hChH----HHHHHHHHHHHhCCCCCCCH
Confidence 87 233 4688999998887 3499999999999875 3553 356789999974 4588
Q ss_pred hHHHHHHHHHHH
Q 008796 459 GNEMENDEYRRK 470 (553)
Q Consensus 459 ~~A~e~~e~a~~ 470 (553)
.+|..+|+.+..
T Consensus 375 ~~A~~~~~~A~~ 386 (452)
T 3e4b_A 375 LNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 111
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=5e-08 Score=85.25 Aligned_cols=140 Identities=12% Similarity=0.041 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhH
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 359 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~ 359 (553)
.+..+..+|..+...|++++|...|.++++.. +.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~------------ 45 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN----------------------------------PS------------ 45 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TT------------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------------CC------------
Confidence 45566667777777777777777776555421 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++++|.++...|++++|...+.+++++.. . .+.++..+|.++...|++.+|..++++++.+.. ..
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p----~~ 114 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIELDK---K----YIKGYYRRAASNMALGKFRAALRDYETVVKVKP----HD 114 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---c----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----CC
Confidence 246788999999999999999999999999842 1 246889999999999999999999999997732 23
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 476 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~ 476 (553)
...+....++..+...|++++|.+.++......+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (166)
T 1a17_A 115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 151 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccc
Confidence 3455556666678889999999999988877776543
No 112
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=5.5e-08 Score=80.50 Aligned_cols=127 Identities=23% Similarity=0.223 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccch
Q 008796 282 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGV 357 (553)
Q Consensus 282 ~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~l 357 (553)
.+++.+|..+...|++++|...|.++++...+ ...++.++|.++...|+++. +.+++.....
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----------- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-----------
Confidence 36778899999999999999999998876432 24567788888888888776 4444432110
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
...+++.+|.++...|++++|...+.+++++.. .+ ..++..+|.++...|++.+|...+++++.+
T Consensus 68 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 68 --SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RS----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp --CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CC----hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 235678888888888888888888888887641 11 346778888888888888888888888764
No 113
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.89 E-value=3.2e-08 Score=98.30 Aligned_cols=180 Identities=15% Similarity=-0.000 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHHccchhhHHHHH
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAH-------SVGCY-------SEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~-------alG~y-------eeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
.+|+..|++|+.++-..++ ++...|.+.. ..|++ ++|...|++|++... ..-..+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~--------~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPD--------IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHH
Confidence 7889999999988654444 4555555544 35775 999999999998321 2334678
Q ss_pred HHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 322 AYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
.++|.++...|++++ +++|+.+ .+. . -..++.++|.++.++|++++|+..|++|+++.. .+
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~-~p~--------~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p---~~ 167 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAI-EDI--------D---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR---TR 167 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS-SSS--------C---THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT---CC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-ccc--------C---ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---CC
Confidence 899999999999887 6666653 121 1 112899999999999999999999999988742 11
Q ss_pred hHhHHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 398 LQLVSQYLTILGNLALA-LHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 398 r~leA~aL~~LG~i~la-lGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
+.+....+.+... .|++++|+..+++|+.+.- + ...+...++.++...|++++|...|+++..
T Consensus 168 ----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p---~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 168 ----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---D---IPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp ----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2334444544333 7999999999999998742 2 245668899999999999999999998876
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=7.1e-08 Score=79.83 Aligned_cols=126 Identities=21% Similarity=0.190 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
+.++|.++...|++++|++.+.++++. .|+ ...++..+|..+...|++++|...|.+++....+ ...++
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~ 72 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL---DPR-----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAW 72 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc---CCc-----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHH
Confidence 467888899999999999999999876 343 2457788999999999999999999999886543 34577
Q ss_pred HHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 322 AYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
.++|.++...|++++ +.+++..... ...+++.+|.++...|++++|...+.+++++.
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALELDPR-------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 899999999999887 4444443211 24678899999999999999999999998763
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.85 E-value=2.7e-08 Score=101.18 Aligned_cols=194 Identities=9% Similarity=-0.030 Sum_probs=147.8
Q ss_pred hhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHccc------h-hh
Q 008796 251 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLR-------GQYAHSVGCYSEAAFHYVEAAKITES------K-SM 316 (553)
Q Consensus 251 ~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lL-------G~~~~alG~yeeAl~~f~~AL~l~~d------~-~g 316 (553)
.-+++++|.+.|.+++++.-..+| ++..+ |.+...++++.++...+..++.+.-. . .|
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~D--------aw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACD--------AWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHH--------HHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred cCCCHHHHHHHHHHHHHhChhhhH--------HHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 589999999999999988443333 56666 77778888888888888888874322 1 11
Q ss_pred -----------HHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008796 317 -----------QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLA 385 (553)
Q Consensus 317 -----------~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~ 385 (553)
..-+....|.++...|++++ |.+++...-.. + .+.. +.+++|.+++..|++++|+.+|+
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~e---A~~~l~~~~~~-----~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYAD---AMEALEAAPVA-----G-SEHL-VAWMKAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHH---HHHHHTSSCCT-----T-CHHH-HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHH---HHHHHHHHHhc-----C-CchH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566677888999999775 44444443211 1 1245 89999999999999999999998
Q ss_pred HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHcCCchHHHH
Q 008796 386 KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD--IPTQIWALSVLTALYQQLGDRGNEME 463 (553)
Q Consensus 386 eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD--~~~qa~aL~~Lg~ly~alGd~~~A~e 463 (553)
++.+ ..++...+.+...||.++..+|++++|++.|++++. +. +.....+...+|.+++.+|+.++|.+
T Consensus 160 ~a~~-----~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 160 SAGK-----WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-----SPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp TGGG-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred Hhhc-----cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6633 335556677999999999999999999999999872 33 33366788999999999999999999
Q ss_pred HHHHHHHHH
Q 008796 464 NDEYRRKKL 472 (553)
Q Consensus 464 ~~e~a~~~~ 472 (553)
.++......
T Consensus 230 ~l~~a~a~~ 238 (282)
T 4f3v_A 230 LLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 998877654
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=8.7e-09 Score=92.47 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++.+|.+|+..|+|++|+.+|++++++. ..-+.++..||.++...|++++|...+++|+.+- +
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------p 96 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-------ERDPKAHRFLGLLYELEENTDKAVECYRRSVELN------P 96 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC------C
Confidence 56788999999999999999999999999984 1235689999999999999999999999999873 3
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHH-HHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMEND-EYRRK 470 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~-e~a~~ 470 (553)
....++..||.+|...|++++|.+.+ +.+.+
T Consensus 97 ~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 97 TQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 33557899999999999998877654 65554
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=9.3e-08 Score=81.47 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
+..+..+|..+...|+|++|...|.+|++...+ -
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------------------------------------------~ 37 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------------------------------------------D 37 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------------------------------C
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------------------------------------------C
Confidence 445666677777777777777777665543211 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
+.+++++|.++..+|++++|...+++++++.- . ...++..+|.++..+|++++|...+++++.+..+.++.+.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~ 110 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---N----FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---C----cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchh
Confidence 35667777777777777777777777777631 1 1456777777777777777777777777777766555555
Q ss_pred HHHHHHHHHHHHH
Q 008796 441 QIWALSVLTALYQ 453 (553)
Q Consensus 441 qa~aL~~Lg~ly~ 453 (553)
...+...|+.+..
T Consensus 111 ~~~~~~~l~~~~~ 123 (126)
T 3upv_A 111 AREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555655543
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=2.7e-08 Score=87.12 Aligned_cols=99 Identities=10% Similarity=-0.011 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.|.++.+.|.+++.+|+|++|+.+|++|+++. ..-+.++.++|.++..+|++.+|...+++|+.+- +
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p 78 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD------S 78 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh------h
Confidence 68999999999999999999999999999884 1225689999999999999999999999999872 2
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.-..++..+|.+|..+|++++|.+.++.+.++
T Consensus 79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23457889999999999999999999998775
No 119
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.82 E-value=4.7e-08 Score=104.61 Aligned_cols=104 Identities=9% Similarity=-0.075 Sum_probs=95.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhccC-hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh--CChHHHHHHHHHH
Q 008796 372 MRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL--YDIPTQIWALSVL 448 (553)
Q Consensus 372 ~~qGr~~EA~~~L~eAL~Lar~elGd-r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl--gD~~~qa~aL~~L 448 (553)
...|+|++|...++++|++..+.+|+ ...++.++++||.+|..+|++++|+.++++||.+.++. ++++..+.++++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 35689999999999999998767776 56789999999999999999999999999999999887 4588999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHH
Q 008796 449 TALYQQLGDRGNEMENDEYRRKKLDEL 475 (553)
Q Consensus 449 g~ly~alGd~~~A~e~~e~a~~~~d~L 475 (553)
|.+|..+|++++|...++++.++....
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 120
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.81 E-value=1.3e-07 Score=88.54 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCc----hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT----ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~d----l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d 313 (553)
.+..+.++|......|+|++|++.|.+|+++.-.+|+ -....-+.++.++|.++..+|+|++|+..|.+|+++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 5667889999999999999999999999999887654 111223558889999999999999999998888764
Q ss_pred hhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 314 KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLH----FAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 314 ~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL----~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
+.+.|+ +.| +.+.+| ++.|.++..+|+++||+..|++|++
T Consensus 87 --------------~n~~~e----------~~p------------d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 87 --------------FNRRGE----------LNQ------------DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --------------HHHHCC----------TTS------------THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------hhcccc----------CCC------------chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 111111 111 145667 9999999999999999999999999
Q ss_pred HHHH
Q 008796 390 IAHN 393 (553)
Q Consensus 390 Lar~ 393 (553)
+.-.
T Consensus 131 l~p~ 134 (159)
T 2hr2_A 131 MIEE 134 (159)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 9743
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=8.4e-08 Score=87.25 Aligned_cols=164 Identities=12% Similarity=-0.046 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHH
Q 008796 283 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEAS 362 (553)
Q Consensus 283 ~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~ 362 (553)
....+|..+...|++++|...|+++++... .-+.++.++|.+|...|++++ |+..++...... . . ..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~~~~~g~~~~---A~~~~~~a~~~~----p-~--~~ 74 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ---SRGDVKLAKADCLLETKQFEL---AQELLATIPLEY----Q-D--NS 74 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH---TSHHHHHHHHHHHHHTTCHHH---HHHHHTTCCGGG----C-C--HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHCCCHHH---HHHHHHHhhhcc----C-C--hH
Confidence 356788889999999999999998876543 346789999999999999776 444444432111 1 0 12
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHH
Q 008796 363 LHFAYGLLL-MRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 441 (553)
Q Consensus 363 aL~~LG~~~-~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~q 441 (553)
.....|.+. ...++..+|...+++++++. -. -..++..||.++...|++++|...+++++.+... +..
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~---P~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~ 143 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAAN---PD----NFELACELAVQYNQVGRDEEALELLWNILKVNLG----AQD 143 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHS---TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----TTT
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc----cCh
Confidence 223334332 23345567899999999873 12 2468899999999999999999999999876321 122
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 008796 442 IWALSVLTALYQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 442 a~aL~~Lg~ly~alGd~~~A~e~~e~a~~ 470 (553)
..+...|+.++...|+.++|...|+++..
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 34678899999999999999999987754
No 122
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.79 E-value=7e-08 Score=103.31 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh-C-
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL-Y- 436 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd-r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl-g- 436 (553)
.+.+++++|.+|..+|+|++|..+++++|++..+..|. +..+|.++++||.+|..+|++++|+.++++||++..+. |
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~ 418 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGK 418 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999999999877775 78889999999999999999999999999999998887 3
Q ss_pred ChHHHHHHHHHH
Q 008796 437 DIPTQIWALSVL 448 (553)
Q Consensus 437 D~~~qa~aL~~L 448 (553)
|++.-+.....|
T Consensus 419 ~Hp~~~~l~~~l 430 (433)
T 3qww_A 419 DHPYISEIKQEI 430 (433)
T ss_dssp TCHHHHHHHHHH
T ss_pred CChHHHHHHHHH
Confidence 355544444444
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.78 E-value=9.1e-08 Score=97.41 Aligned_cols=170 Identities=20% Similarity=0.156 Sum_probs=94.7
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHh
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~ 331 (553)
..+|.+|++.+..+++.. ...+.++..+|..+...|+|++|...|.+|+++..+....
T Consensus 126 L~~~~~A~~~~~~a~~~~--------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------- 183 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------- 183 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC--------------
T ss_pred EeecccccchhcCCHHHH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC--------------
Confidence 445556666665555432 2356789999999999999999999999999977553210
Q ss_pred CChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHH
Q 008796 332 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 411 (553)
Q Consensus 332 Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i 411 (553)
+.+ .+.. ..+. .+.+++++|.++..+|+|++|+.+|++|+++.- . -+.+++++|.+
T Consensus 184 -~~~---~~~~-~~~~------------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p---~----~~~a~~~lg~~ 239 (336)
T 1p5q_A 184 -SNE---EAQK-AQAL------------RLASHLNLAMCHLKLQAFSAAIESCNKALELDS---N----NEKGLSRRGEA 239 (336)
T ss_dssp -CSH---HHHH-HHHH------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHH
T ss_pred -ChH---HHHH-HHHH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C----cHHHHHHHHHH
Confidence 000 0000 0011 345555555555555555566655555555521 1 13455555555
Q ss_pred HHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHHH
Q 008796 412 ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNE-MENDEYRRKKLD 473 (553)
Q Consensus 412 ~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A-~e~~e~a~~~~d 473 (553)
+..+|++++|...+++|+.+.. +. ..++..|+.++...|++.+| ...|+.......
T Consensus 240 ~~~~g~~~~A~~~~~~al~l~P---~~---~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 240 HLAVNDFELARADFQKVLQLYP---NN---KAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCS---SC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC---CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555655555555555555531 11 12445555555555555555 444444433333
No 124
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.78 E-value=1.3e-07 Score=100.94 Aligned_cols=96 Identities=10% Similarity=-0.052 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh--C
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL--Y 436 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd-r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl--g 436 (553)
.+.+++++|.+|..+|+|++|..+++++|++..+..|. ...+|.++++||.+|..+|++++|+.++++|+++.++. .
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~ 407 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR 407 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999776766 77889999999999999999999999999999999887 4
Q ss_pred ChHHHHHHHHHHHHHHHHc
Q 008796 437 DIPTQIWALSVLTALYQQL 455 (553)
Q Consensus 437 D~~~qa~aL~~Lg~ly~al 455 (553)
|++.-+.++..|+.+....
T Consensus 408 ~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 408 EHSLIEDLILLLEECDANI 426 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 5777778888888877543
No 125
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.78 E-value=4.6e-07 Score=108.37 Aligned_cols=259 Identities=13% Similarity=0.025 Sum_probs=177.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHH---HHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHH
Q 008796 182 VILGRPKGLFKECMQRIQSGMQTIQ---DALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEA 258 (553)
Q Consensus 182 v~~~~~~G~~dka~ky~ekAL~~~~---~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeA 258 (553)
+......|.|++|...|+++-...+ ..++.+|..+.+.|-- -++- .-.+..++|.++...|++.+|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~A--------ervn---~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFA--------ERCN---EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHH--------HhcC---CHHHHHHHHHHHHhCCCHHHH
Confidence 5566678999999999888754422 1223333322210000 0000 123456899999999999999
Q ss_pred HHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHH
Q 008796 259 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSS 338 (553)
Q Consensus 259 l~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~ 338 (553)
++.|.+| .| +..+..+|.++...|+|++|.++|..|.+..++..- -..+|.+|...++.+.++
T Consensus 1125 IdsYiKA-------dD------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I----dt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1125 IDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV----ETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HHHHHhc-------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc----cHHHHHHHHhhcCHHHHH
Confidence 9999776 33 235667999999999999999999988876544322 224889998888877655
Q ss_pred HHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCCh
Q 008796 339 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 418 (553)
Q Consensus 339 qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~ 418 (553)
..+ ... ....+..+|..+...|+|++|+.+|.+| .....||.++..+|++
T Consensus 1188 ~fI---~~~------------n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1188 EFI---NGP------------NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHH---hCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------hHHHHHHHHHHHhCCH
Confidence 443 111 1245668999999999999999999996 2456788899999999
Q ss_pred HHHHHHHHHHHHHH------------------HHhCC-hHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-------HHHH
Q 008796 419 VQAREILRSSLTLA------------------KKLYD-IPTQIWALSVLTALYQQLGDRGNEMENDEYR-------RKKL 472 (553)
Q Consensus 419 ~eA~~~l~~AL~LA------------------rklgD-~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a-------~~~~ 472 (553)
.+|.+.+++|.... +..|. ......-+..++..|...|.+++|...++.+ +.++
T Consensus 1238 q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1238 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 99999988874432 11111 1112234567888999999999999999877 4467
Q ss_pred HHHhhHHHHhh--cchhhHHHHhhhcchh
Q 008796 473 DELQKRLADAY--SSIHHIELISKVKLEV 499 (553)
Q Consensus 473 d~L~~~~~~A~--~~~~h~~l~~~~~~~~ 499 (553)
+++..-..... ...+|.. .-|.|+.+
T Consensus 1318 tELaiLyaKy~peklmEhlk-~f~~rini 1345 (1630)
T 1xi4_A 1318 TELAILYSKFKPQKMREHLE-LFWSRVNI 1345 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHH-HHHHhccc
Confidence 77666666554 5566775 45777775
No 126
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.77 E-value=8.3e-08 Score=85.75 Aligned_cols=106 Identities=15% Similarity=0.008 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC------------hHhHHHHHHHHHHHHHHCCChHHHHHHHH
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN------------LQLVSQYLTILGNLALALHDTVQAREILR 426 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd------------r~leA~aL~~LG~i~lalGd~~eA~~~l~ 426 (553)
..+..+...|..++..|+|++|..+|++|+.+.. ...+ ....+.++.++|.++..+|++.+|...++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLD-TLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3689999999999999999999999999999964 2221 35667899999999999999999999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 427 SSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 427 ~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.|+.+- +.-..++..+|.+|...|++++|.+.++.+...
T Consensus 88 ~al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKRE------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 999882 334568899999999999999999999988876
No 127
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.76 E-value=1.7e-07 Score=87.72 Aligned_cols=114 Identities=12% Similarity=0.056 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc------cChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM------GNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~el------Gdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
..|..+.+.|..++..|+|++|...|++||++.. .. .....-+.++.++|.++..+|++++|+..+++||.++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p-~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISH-TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3689999999999999999999999999999974 31 1112345699999999999999999999999999986
Q ss_pred HHhCC-hHHHHHHH----HHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 433 KKLYD-IPTQIWAL----SVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 433 rklgD-~~~qa~aL----~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
.+.+. .+.-..++ ..+|.++..+|++++|.+.|+.+..+.-
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 66654 33445555 9999999999999999999999988754
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=1.6e-07 Score=82.10 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccccccccccc
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 355 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~ 355 (553)
.+..+..+|..+...|+|++|..+|.+|+++..+ .+.++.++|.+|...|++++ +.+|+.+ .+.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~-------- 79 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIRL-DSK-------- 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-hhh--------
Confidence 5778999999999999999999999999987543 36788999999999999987 7777765 221
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 356 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
-+.+++++|.++..+|++++|+..|+++|++.
T Consensus 80 ----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 80 ----FIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34689999999999999999999999999983
No 129
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.73 E-value=2.4e-07 Score=76.94 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh-CCh
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKL-YDI 438 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArkl-gD~ 438 (553)
.+.+++.+|.++...|++++|..++.+++++.. . .+.++..+|.++...|++.+|..++++++.+.... ++.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP-T------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-c------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 678899999999999999999999999998842 1 24678999999999999999999999999998875 455
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 439 PTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 439 ~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.....++..+|.+|...|++++|.+.++.+...
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 555788999999999999999999999888764
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=2e-08 Score=92.79 Aligned_cols=167 Identities=14% Similarity=0.082 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccccccccc-c
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDT-I 354 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~-~ 354 (553)
.+..+...|.....+|.|+.|...+.... .+....+..+.++|.++...|++++ +.+|+.+.....+.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 79 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQGAKKSIYDYTD---EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL 79 (198)
T ss_dssp -------------------CCCSGGGCCH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH
T ss_pred CcccccchhhhhhhhhhccccCchhhCCH---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhH
Confidence 34566677777777777777777766221 2244567777888888888888776 66666654332110000 0
Q ss_pred --cchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 355 --NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 355 --~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
....-.+.+++++|.++...|++++|+.++.+++++.- ..+.++..+|.++..+|++++|...+++|+.+.
T Consensus 80 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 80 LDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-------NNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 00000258899999999999999999999999999841 225689999999999999999999999999873
Q ss_pred HHhCChHHHHHHHHHHHHHHHHcCCchHHH
Q 008796 433 KKLYDIPTQIWALSVLTALYQQLGDRGNEM 462 (553)
Q Consensus 433 rklgD~~~qa~aL~~Lg~ly~alGd~~~A~ 462 (553)
. .-..+...|+.++...|+..++.
T Consensus 153 p------~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 P------NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp T------TCHHHHHHHHHHHHHHHHHHC--
T ss_pred C------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22456778888888887776665
No 131
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.73 E-value=9.4e-08 Score=101.96 Aligned_cols=119 Identities=12% Similarity=0.104 Sum_probs=101.9
Q ss_pred HHcCCHHHHHHHHHHHHHHccc-----hhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHH
Q 008796 292 HSVGCYSEAAFHYVEAAKITES-----KSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEAS 362 (553)
Q Consensus 292 ~alG~yeeAl~~f~~AL~l~~d-----~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~ 362 (553)
..+|+|++|+..|++++++... ....+.+++|||.+|..+|++++ +.++|++...++... +. ..|.
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~---Hp--~~a~ 372 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS---HP--VRGV 372 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS---CH--HHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC---Ch--HHHH
Confidence 4589999999999999987644 33588999999999999999997 999999988775332 33 3799
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-hHhHHHHHHHHHHHHHHC
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN-LQLVSQYLTILGNLALAL 415 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd-r~leA~aL~~LG~i~lal 415 (553)
+++++|.+|..+|++++|..+|++||+|.....|. +..++.++++|+.+...+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877786 678899999999887543
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.3e-07 Score=80.65 Aligned_cols=101 Identities=12% Similarity=0.013 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++.+|..++..|+|++|...|++++++.- . .+.++.++|.++..+|++++|...+++|+.+. +
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP---E----DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------P 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---C----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------C
Confidence 678999999999999999999999999999842 2 25789999999999999999999999999873 2
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
.-..++..+|.++...|++++|.+.++.+.....
T Consensus 70 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 2256788999999999999999999999888763
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=6.4e-08 Score=88.46 Aligned_cols=101 Identities=12% Similarity=0.003 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
-+.+++.+|.+++.+|+|++|...|++++++. ..-+.++.+||.++..+|++++|.+.+++|+.+.-.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~----- 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN----- 102 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-----
Confidence 57899999999999999999999999999983 223568999999999999999999999999988532
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
-..++..+|.+|..+|++++|..+|+.+.....
T Consensus 103 -~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 103 -DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 234778999999999999999999999887653
No 134
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.71 E-value=4.3e-07 Score=75.44 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
+.++..+|..+...|++++|..+|.++++.. +. -
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~------------~ 37 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD----------------------------------PT------------N 37 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TT------------C
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----------------------------------Cc------------c
Confidence 4566677777777777777777777655431 11 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
+.+++.+|.++...|++++|..++.+++++......+....+.++..+|.++...|++.+|...++.++.+. ++
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--- 111 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH---RT--- 111 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CC---
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC---
Confidence 357788999999999999999999999999753345555568899999999999999999999999999863 22
Q ss_pred HHHHHHHHHHHHHHcC
Q 008796 441 QIWALSVLTALYQQLG 456 (553)
Q Consensus 441 qa~aL~~Lg~ly~alG 456 (553)
..+...++.+....+
T Consensus 112 -~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 112 -PDVLKKCQQAEKILK 126 (131)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH
Confidence 234455555555443
No 135
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.68 E-value=4e-07 Score=81.42 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
.+..+..+|.++...|+|++|++.+.+++++. |+ -+.++..+|.++..+|+|++|..+|.+|+++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 75 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PA-----NPIYLSNRAAAYSASGQHEKAAEDAELATVVD------ 75 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---Cc-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------
Confidence 44556778888888888888888888888764 33 14577788888888888888888888766541
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
+. -..+++++|.++..+|++++|+.+|++++++.
T Consensus 76 ----------------------------p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 76 ----------------------------PK------------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----------------------------TT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------------------CC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 11 24678899999999999999999999999996
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=1.6e-07 Score=95.53 Aligned_cols=132 Identities=13% Similarity=-0.004 Sum_probs=98.4
Q ss_pred HcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHH
Q 008796 293 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYG 368 (553)
Q Consensus 293 alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG 368 (553)
.++.+++|...|..++.. ....+.++.++|.+|...|++++ +.+|+.+..... ..
T Consensus 125 ~L~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~----------- 183 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES-------SF----------- 183 (336)
T ss_dssp EEEEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC-------CC-----------
T ss_pred EEeecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc-------cC-----------
Confidence 456666777666654432 34578899999999999999987 788887754431 10
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008796 369 LLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVL 448 (553)
Q Consensus 369 ~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~L 448 (553)
.. .++..+ ....+.++++||.++..+|++.+|..++++|+.+. +.-..++..+
T Consensus 184 -------~~-------~~~~~~-------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~l 236 (336)
T 1p5q_A 184 -------SN-------EEAQKA-------QALRLASHLNLAMCHLKLQAFSAAIESCNKALELD------SNNEKGLSRR 236 (336)
T ss_dssp -------CS-------HHHHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHH
T ss_pred -------Ch-------HHHHHH-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHH
Confidence 00 111111 13446788999999999999999999999999883 2235688999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHHH
Q 008796 449 TALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 449 g~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
|.+|..+|++++|.+.++.+....
T Consensus 237 g~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 237 GEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999987753
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=1.5e-07 Score=86.95 Aligned_cols=132 Identities=14% Similarity=0.053 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhh--------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQA--------CESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 309 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~--------~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~ 309 (553)
.+..+.++|.++...|+|++|++.+.+++++....++.... ....++.++|.++..+|+|++|..+|.+|++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45567889999999999999999999999998777652110 0124556666666666666666666665543
Q ss_pred HccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 310 ITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 310 l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
+ .+. -..+++.+|.++..+|++++|+.+|+++++
T Consensus 117 ~----------------------------------~p~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 117 I----------------------------------DKN------------NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp H----------------------------------STT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred h----------------------------------Ccc------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 111 246788999999999999999999999998
Q ss_pred HHHHhccChHhHHHHHHHHHHHHHHCCChHHHH
Q 008796 390 IAHNHMGNLQLVSQYLTILGNLALALHDTVQAR 422 (553)
Q Consensus 390 Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~ 422 (553)
+.- .+ ..++..|+.++...|+..++.
T Consensus 151 ~~p---~~----~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 151 LNP---NN----LDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HST---TC----HHHHHHHHHHHHHHHHHHC--
T ss_pred HCC---Cc----HHHHHHHHHHHHHHHHHHHHH
Confidence 841 22 456778888888887776666
No 138
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.66 E-value=3.1e-07 Score=82.00 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---------------hhhHHHHHHHHHHHHHHhCChHH----HHH
Q 008796 279 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---------------KSMQAMCHAYAAVSYFCIGDAES----SSQ 339 (553)
Q Consensus 279 ~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---------------~~g~A~aL~NLA~vyl~~Gd~e~----~~q 339 (553)
..+..+...|..+...|+|++|..+|.+|++.... ....+.++.|+|.+|...|+++. +.+
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35778899999999999999999999999998432 34467899999999999999987 777
Q ss_pred HHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 340 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 340 AL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
|+.+ .|. -+.+++.+|.++..+|++++|+..|++++++.
T Consensus 89 al~~-~p~------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 89 VLKR-EET------------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHH-STT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhc-CCc------------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 7775 222 35789999999999999999999999999994
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=2.4e-07 Score=82.89 Aligned_cols=101 Identities=19% Similarity=0.082 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCCh
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 438 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~ 438 (553)
..+.+++.+|.+++..|+|++|..+|++++++.- . .+.++.++|.++..+|++.+|...+++|+.+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 75 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP---A----NPIYLSNRAAAYSASGQHEKAAEDAELATVVD------ 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---c----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------
Confidence 3789999999999999999999999999999852 1 25689999999999999999999999999884
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 439 PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 439 ~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
+.-..++..+|.+|...|++++|.++++.+....
T Consensus 76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2235678999999999999999999999988764
No 140
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.65 E-value=1.2e-06 Score=93.25 Aligned_cols=190 Identities=12% Similarity=0.057 Sum_probs=137.7
Q ss_pred hCCHH-------HHHHHHHHHHH-HHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHH
Q 008796 252 RSGFV-------EAQEALVQMKN-WFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 323 (553)
Q Consensus 252 ~Gr~a-------eAl~~l~qAL~-L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~N 323 (553)
.|+++ +|.+.+++|++ + .|+ -..++..+|.+....|++++|...|.+|+++..+ ..+.++.+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~---~p~-----~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~ 361 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTL---LKK-----NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DPTLVYIQ 361 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTT---CSS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--CHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHh---Ccc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--CchHHHHH
Confidence 78887 88888888886 4 455 2558889999999999999999999999986433 22457888
Q ss_pred HHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhccCh
Q 008796 324 AAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL-LMRQQDFQEARNRLAKGLQIAHNHMGNL 398 (553)
Q Consensus 324 LA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~-~~~qGr~~EA~~~L~eAL~Lar~elGdr 398 (553)
.|.++.+.|+.++ +.+|+..... ....+...|.+ +...|++++|+..|+++++..- .+
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~~~-------------~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p---~~- 424 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDART-------------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---DI- 424 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTC-------------CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT---TC-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCC-------------chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC---CC-
Confidence 8888888888766 4455432110 11233344444 3468999999999999999851 12
Q ss_pred HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 399 QLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 399 ~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
..++..+|.+....|+..+|+..+++|+..... ++...........+.....|+.+.+...+.++.+...
T Consensus 425 ---~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 425 ---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp ---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred ---HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 457789999999999999999999999875221 2211222334455667788999999988888877765
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=7.2e-07 Score=81.42 Aligned_cols=103 Identities=9% Similarity=-0.124 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008796 175 ALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSG 254 (553)
Q Consensus 175 ~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr 254 (553)
+-+++..+..+...|++++|.+++++++.. .|. -...+.++|.++..+|+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------~P~--------------------~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----------DFY--------------------NVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCC--------------------CHHHHHHHHHHHHHHcc
Confidence 345666677888999999999999999988 122 12346789999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 315 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~ 315 (553)
|++|++.|.+|+++. |+- +.++.++|.++..+|++++|...|.+|+++..+..
T Consensus 86 ~~~Ai~~~~~al~l~---P~~-----~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 86 FQQAADLYAVAFALG---KND-----YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHHS---SSC-----CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhhC---CCC-----cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999885 441 34789999999999999999999999999987755
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.61 E-value=9.8e-07 Score=73.00 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhH
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 359 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~ 359 (553)
.+.++..+|..+...|++++|...|.+++....+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------------------------------------- 44 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA---------------------------------------------- 44 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------------------------------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------------------------------------------
Confidence 4556667777777777777777777766543211
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++.+|.++...|++++|...+.+++++.. .+ ..++..+|.++...|++.+|...+++++.+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p------ 111 (131)
T 2vyi_A 45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP---AY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDP------ 111 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------
T ss_pred CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---cC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc------
Confidence 134566677777777777777777777776531 11 34666777777777777777777777766521
Q ss_pred HHHHHHHHHHHHHHHcCCc
Q 008796 440 TQIWALSVLTALYQQLGDR 458 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~ 458 (553)
....+...++.++...|++
T Consensus 112 ~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 112 DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHhcC
Confidence 1123556666777666654
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=4.5e-07 Score=75.94 Aligned_cols=124 Identities=13% Similarity=-0.017 Sum_probs=97.3
Q ss_pred chhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008796 169 PKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAV 248 (553)
Q Consensus 169 p~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~ 248 (553)
+.....+-.+...+..+...|++++|.++++++++. .+. ...++.++|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------~~~--------------------~~~~~~~la~~ 59 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----------NPK--------------------DAKLYSNRAAC 59 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----------CTT--------------------CHHHHHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCC--------------------cHHHHHHHHHH
Confidence 334445666677778888999999999999999876 111 12235788999
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Q 008796 249 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 328 (553)
Q Consensus 249 ~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vy 328 (553)
+...|++++|++.+.+++++ .|+ .+.++..+|.++..+|++++|..+|.++++...+ ...+..++|.++
T Consensus 60 ~~~~~~~~~A~~~~~~a~~~---~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 128 (133)
T 2lni_A 60 YTKLLEFQLALKDCEECIQL---EPT-----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS---CKEAADGYQRCM 128 (133)
T ss_dssp HTTTTCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG---GTHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCC-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC---chHHHHHHHHHH
Confidence 99999999999999999987 344 2458899999999999999999999999987543 245677888888
Q ss_pred HHhCC
Q 008796 329 FCIGD 333 (553)
Q Consensus 329 l~~Gd 333 (553)
...|+
T Consensus 129 ~~~~~ 133 (133)
T 2lni_A 129 MAQYN 133 (133)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 87764
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=1.4e-07 Score=93.39 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccc
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 356 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~ 356 (553)
+..+..+|..+...|+|++|..+|.+|++...+ .+.++.|+|.+|...|++++ +.+|+.+ .+ +
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p---------~ 70 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALEL-DG---------Q 70 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CT---------T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC---------C
Confidence 567889999999999999999999999987544 46788999999999999887 4444432 11 1
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 357 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
-..+++++|.++..+|++++|...|++++++.-
T Consensus 71 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 71 ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 357899999999999999999999999999974
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.57 E-value=1.1e-06 Score=77.10 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
+..+.++|.++...|+|++|++.+.+++.+ .|+ -+.++..+|.++..+|+|++|...|.+|+++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------- 82 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML---DHY-----DARYFLGLGACRQSLGLYEQALQSYSYGALMD------- 82 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------
Confidence 344567888888899999999999888865 444 24577888888888999999998888776531
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 319 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 319 ~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
|. -..+++++|.++...|++++|+..|++++++.-
T Consensus 83 ---------------------------p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 83 ---------------------------IN------------EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ---------------------------TT------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CC------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 11 124678899999999999999999999999963
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=5.6e-07 Score=80.67 Aligned_cols=101 Identities=8% Similarity=-0.031 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++.+|.++..+|+|++|...|++++++. -. -+.++..+|.++..+|++++|...+++|+.+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------ 86 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HY----DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI------ 86 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC------
Confidence 56789999999999999999999999999884 12 256788999999999999999999999998742
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
.-..++..+|.+|...|++++|.+.++.+.+...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2234678999999999999999999998877654
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=8.8e-07 Score=75.51 Aligned_cols=102 Identities=18% Similarity=0.087 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++.+|.+++..|++++|..+|.+++.+.- . .+.++..+|.++..+|++.+|...+++++.+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------ 74 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-L------VAVYYTNRALCYLKMQQPEQALADCRRALELDG------ 74 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-C------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------
Confidence 478999999999999999999999999999842 1 256899999999999999999999999998742
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
....++..+|.+|...|++++|.+.++.+......
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 23457889999999999999999999999887654
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=3e-07 Score=82.69 Aligned_cols=121 Identities=20% Similarity=0.202 Sum_probs=72.0
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYF 329 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl 329 (553)
...|++++|++.+.++++. .|+ .+.++..+|.++...|++++|..+|.+|++...+. .
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~----------- 78 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQ-----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---A----------- 78 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---H-----------
T ss_pred hhccCHHHHHHHHHHHHHh---CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---H-----------
Confidence 4567888888888888875 344 24577888888888899999998888777653321 2
Q ss_pred HhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHHhccChHhHHHHHH
Q 008796 330 CIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL-LMRQQDF--QEARNRLAKGLQIAHNHMGNLQLVSQYLT 406 (553)
Q Consensus 330 ~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~-~~~qGr~--~EA~~~L~eAL~Lar~elGdr~leA~aL~ 406 (553)
.+++.+|.+ +...|++ ++|...+.+++++.- .+ ..++.
T Consensus 79 --------------------------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~ 119 (177)
T 2e2e_A 79 --------------------------------ELYAALATVLYYQASQHMTAQTRAMIDKALALDS---NE----ITALM 119 (177)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT---TC----HHHHH
T ss_pred --------------------------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC---Cc----HHHHH
Confidence 344455555 4455555 556666655555521 11 23455
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 407 ILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 407 ~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
.+|.++...|++.+|...+++++.+
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5566666666666666665555554
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.54 E-value=1e-06 Score=75.16 Aligned_cols=101 Identities=20% Similarity=0.126 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
+..+..+|..+...|+|++|...|.+|++...+ -
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------------------------------------------~ 42 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------------------------------------------V 42 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------------------------------C
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC----------------------------------------------c
Confidence 557777888888888888888888876653211 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArk 434 (553)
+.+++++|.++..+|++++|...+++++++.. . .+.++..+|.++...|++.+|...+++++.+...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDG---Q----SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---h----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 35778888888888888888888888888741 1 2457888888898999999999999888888766
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=8.8e-07 Score=79.37 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
+..+.++|.++..+|+|++|++.+.+++++ .|+ -+.++..+|.++..+|++++|...|.+|+++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------- 85 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHY-----DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD------- 85 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---Ccc-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------
Confidence 334567777888888888888888887765 343 14466778888888888888888888666431
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 319 MCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 319 ~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
|. -..+++++|.++...|++++|+.+|++++++.
T Consensus 86 ---------------------------p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 ---------------------------IX------------EPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ---------------------------TT------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------------CC------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 11 23577899999999999999999999999996
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=2.2e-06 Score=70.82 Aligned_cols=123 Identities=11% Similarity=-0.020 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008796 171 SAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVEL 250 (553)
Q Consensus 171 ~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l 250 (553)
..-.+.++...+..+...|++++|.+++++++.. .+. ....+.++|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~--------------------~~~~~~~~a~~~~ 57 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----------NPA--------------------NAVYFCNRAAAYS 57 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc----------CCC--------------------CHHHHHHHHHHHH
Confidence 3345667777888888999999999999999876 111 1223567888889
Q ss_pred hhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH
Q 008796 251 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC 330 (553)
Q Consensus 251 ~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~ 330 (553)
..|++++|++.+.+++++ .|+ .+.++..+|.++..+|++++|...|.++++...+ ...+..++|.++..
T Consensus 58 ~~~~~~~A~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 58 KLGNYAGAVQDCERAICI---DPA-----YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD---NETYKSNLKIAELK 126 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHH
T ss_pred HhhchHHHHHHHHHHHhc---Ccc-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHH
Confidence 999999999999999986 444 2457899999999999999999999999987543 24577899999998
Q ss_pred hCCh
Q 008796 331 IGDA 334 (553)
Q Consensus 331 ~Gd~ 334 (553)
.|++
T Consensus 127 ~~~~ 130 (131)
T 2vyi_A 127 LREA 130 (131)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 8875
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=9.6e-07 Score=73.87 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccc
Q 008796 279 CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI 354 (553)
Q Consensus 279 ~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~ 354 (553)
.....+..+|..+...|++++|...|.++++...+ ...++.++|.+|...|++++ +.+++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------- 82 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-------- 82 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--------
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------
Confidence 35678999999999999999999999999876543 36788999999999999887 5566554211
Q ss_pred cchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCC
Q 008796 355 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHD 417 (553)
Q Consensus 355 ~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd 417 (553)
...+++.+|.++...|++++|..++.+++++.. .. ..+...+|.++..+|+
T Consensus 83 -----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 -----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS-SC------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GG------THHHHHHHHHHHHHTC
T ss_pred -----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-Cc------hHHHHHHHHHHHHhcC
Confidence 356889999999999999999999999998842 11 3467788888877664
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=8.7e-07 Score=77.80 Aligned_cols=101 Identities=14% Similarity=0.011 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
...+++.+|.+++..|++++|...|++++.+. -. .+.++..||.++...|++++|...+++|+.+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------ 83 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD---HY----DARYFLGLGACRQSLGLYEQALQSYSYGALMDI------ 83 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC---Cc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC------
Confidence 56789999999999999999999999999873 12 246788999999999999999999999998742
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
....++..+|.+|...|++++|.+.++.+.+...
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 2234678899999999999999999999887654
No 154
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.7e-07 Score=76.83 Aligned_cols=98 Identities=12% Similarity=0.026 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++.+|.++..+|++++|...|++++++.- .+ +.++.++|.++..+|++++|...+++|+.+....++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP---QN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHH
Confidence 567899999999999999999999999999842 22 56789999999999999999999999999877766767
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMEN 464 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~ 464 (553)
....++..+|.++...|+++.|.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhH
Confidence 7788899999999999988877653
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.49 E-value=3.4e-06 Score=69.08 Aligned_cols=81 Identities=23% Similarity=0.202 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 441 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~q 441 (553)
.+++.+|.++...|++++|...+++++++.. .+ ..++..+|.++...|++.+|...+++++.+. + ..
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~---~~ 110 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P---NN 110 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T---TC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---cc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---C---Cc
Confidence 3556666666666667777766666665521 11 2455666666777777777766666666542 1 11
Q ss_pred HHHHHHHHHHHHHc
Q 008796 442 IWALSVLTALYQQL 455 (553)
Q Consensus 442 a~aL~~Lg~ly~al 455 (553)
..+...++.++...
T Consensus 111 ~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 111 AEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 23445555555443
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.48 E-value=1.6e-06 Score=73.02 Aligned_cols=104 Identities=11% Similarity=0.029 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 441 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~q 441 (553)
.+++.+|.+++..|++++|...|.++++.. -.+ ...+.++..+|.++...|++++|...+++++... ++....
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~ 75 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELY---PNG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKA 75 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCccc
Confidence 357889999999999999999999998874 222 4456789999999999999999999999998764 333334
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 442 IWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 442 a~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
..++..+|.+|...|++++|.+.++...+..
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5688999999999999999999998877643
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=4.8e-06 Score=84.59 Aligned_cols=209 Identities=11% Similarity=-0.037 Sum_probs=139.7
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 008796 185 GRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQ 264 (553)
Q Consensus 185 ~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~q 264 (553)
.+..++++.|.+++.++++. ++.. ...|+|.+= .=..=+.+....++..+++..+.+
T Consensus 16 ~~~~~d~~~A~~~F~~a~~~---------dP~~--------~Daw~g~~a------~g~~~~~~L~~~~r~~~a~~~~~~ 72 (282)
T 4f3v_A 16 SMLPMSEARSLDLFTEITNY---------DESA--------CDAWIGRIR------CGDTDRVTLFRAWYSRRNFGQLSG 72 (282)
T ss_dssp HHTTTCHHHHHHHHHHHHHH---------CTTC--------HHHHHHHHH------TTCCCHHHHHHHHHTGGGTTHHHH
T ss_pred cccCCCHHHHHHHHHHHHHh---------Chhh--------hHHHHhHHH------ccCCcHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999998 1111 233432200 000002333555566777777777
Q ss_pred HHHHHHHC-Cchhh-h-----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHh
Q 008796 265 MKNWFIRF-PTILQ-A-----------CESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCI 331 (553)
Q Consensus 265 AL~L~r~~-~dl~~-~-----------~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~ 331 (553)
++.+--.. +-.+. . ....+....+..+...|+|++|.+.|...+. +. .+.. +..++|.++...
T Consensus 73 ~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~-p~~~-~~~~~a~l~~~~ 148 (282)
T 4f3v_A 73 SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--AG-SEHL-VAWMKAVVYGAA 148 (282)
T ss_dssp TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TT-CHHH-HHHHHHHHHHHT
T ss_pred HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CchH-HHHHHHHHHHHc
Confidence 77652221 10111 1 1234555567778889999999999985432 22 3444 889999999999
Q ss_pred CChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHH
Q 008796 332 GDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL 411 (553)
Q Consensus 332 Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i 411 (553)
|+++..... +++....+ .....+.+++.+|.++..+|++++|+.+|++++. ...++.....+++.+|.+
T Consensus 149 ~r~~dA~~~---l~~a~~~~----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~gla 217 (282)
T 4f3v_A 149 ERWTDVIDQ---VKSAGKWP----DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAMA 217 (282)
T ss_dssp TCHHHHHHH---HTTGGGCS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHH
T ss_pred CCHHHHHHH---HHHhhccC----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHH
Confidence 998764444 44442221 1112467899999999999999999999999862 112134466789999999
Q ss_pred HHHCCChHHHHHHHHHHHHH
Q 008796 412 ALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 412 ~lalGd~~eA~~~l~~AL~L 431 (553)
+..+|+.++|+..+++++..
T Consensus 218 L~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 218 RRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999875
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.46 E-value=1e-06 Score=93.61 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=104.0
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh------------hHHH
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS------------MQAM 319 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~------------g~A~ 319 (553)
.++|.+|++.+..+++.. ...+.++..+|..+...|+|++|..+|.+|+++..+.. ..+.
T Consensus 247 l~~~~~A~~~~~~~~~~~--------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK--------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEECCCCGGGSCHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH--------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 344555555555444432 23567899999999999999999999999999765531 3467
Q ss_pred HHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 008796 320 CHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM 395 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~el 395 (553)
++.|+|.+|...|++++ +.+|+.+--. -+.+++++|.++..+|++++|+..|++|+++.-
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P--- 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP--- 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---
Confidence 88888888888888886 6666664211 246788888888888888888888888888742
Q ss_pred cChHhHHHHHHHHHHHHHHCCChHHHH
Q 008796 396 GNLQLVSQYLTILGNLALALHDTVQAR 422 (553)
Q Consensus 396 Gdr~leA~aL~~LG~i~lalGd~~eA~ 422 (553)
.-..++..||.++...|+..+|.
T Consensus 383 ----~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 383 ----QNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 12246778888888888777665
No 159
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.46 E-value=1.4e-06 Score=90.54 Aligned_cols=133 Identities=13% Similarity=0.086 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCc--------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT--------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 309 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~d--------l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~ 309 (553)
.+..+.++|.++...|+|++|++.|.+|++++...+. ......+.++.++|.++..+|+|++|..+|.+|++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4566889999999999999999999999998776421 01222345566666666666666666666665543
Q ss_pred HccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 310 ITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 310 l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
+ .+. .+.+++.+|.++..+|++++|+..|++|++
T Consensus 302 ~----------------------------------~p~------------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 302 I----------------------------------DPS------------NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp T----------------------------------CTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h----------------------------------Cch------------hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 111 356788999999999999999999999998
Q ss_pred HHHHhccChHhHHHHHHHHHHHHHHCCChHHHHH
Q 008796 390 IAHNHMGNLQLVSQYLTILGNLALALHDTVQARE 423 (553)
Q Consensus 390 Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~ 423 (553)
+.- .+ ..+...|+.++...++..++..
T Consensus 336 l~P---~~----~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 336 IAP---ED----KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HCT---TC----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCC---CC----HHHHHHHHHHHHHHHHHHHHHH
Confidence 842 22 3466778888877777766653
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=1.4e-06 Score=70.92 Aligned_cols=99 Identities=12% Similarity=-0.042 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++.+|..+...|++++|..++++++.+.. .+ ..++..+|.++...|++.+|...+++++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP---HN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------ 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---Cc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc------
Confidence 578899999999999999999999999998742 12 56889999999999999999999999998732
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
....++..+|.++...|++++|.+.++.+...
T Consensus 70 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 70 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 22457789999999999999999998877654
No 161
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.43 E-value=3.3e-06 Score=89.98 Aligned_cols=180 Identities=15% Similarity=0.000 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HccchhhHHHH
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHS-------VGCYS-------EAAFHYVEAAK-ITESKSMQAMC 320 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~a-------lG~ye-------eAl~~f~~AL~-l~~d~~g~A~a 320 (553)
.+|+..|++|+..+-.. +.++...|.+... .|+++ +|...|.+|++ ... .-..+
T Consensus 255 ~~a~~~y~~al~~~p~~--------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p---~~~~l 323 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHH--------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---KNMLL 323 (530)
T ss_dssp HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS---SCHHH
T ss_pred HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc---ccHHH
Confidence 47888999999875433 3467778888775 79987 99999999986 332 23567
Q ss_pred HHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 321 HAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
..++|.++...|+++. +++++.+ .+. . -+.++..+|.+..++|++++|+..|.+|++... ..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~--------~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~ 389 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI-EDI--------D---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TR 389 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS-SSS--------C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc-ccc--------C---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--Cc
Confidence 7888999999999886 6677663 111 1 235899999999999999999999999987631 11
Q ss_pred ChHhHHHHHHHHHHH-HHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 397 NLQLVSQYLTILGNL-ALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 397 dr~leA~aL~~LG~i-~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
.......+.+ +...|++++|+..+++|+... ++. ..+...+++++...|+.++|...|+++...
T Consensus 390 -----~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~---p~~---~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 390 -----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp -----THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH---TTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred -----hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC---CCC---HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 1222233333 346999999999999999875 332 235578889999999999999999988653
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.41 E-value=7.9e-07 Score=76.96 Aligned_cols=97 Identities=12% Similarity=-0.009 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 441 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~q 441 (553)
..++.+|.++...|++++|+..|++++++. ..-+.++..||.++...|++.+|+..+++|+.+.- .-
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~ 84 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------KD 84 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CC
Confidence 357889999999999999999999999984 12256889999999999999999999999998732 22
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 442 IWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 442 a~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
..++..||.+|...|++++|.+.++.+.+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 347789999999999999999999887654
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=3.5e-06 Score=70.94 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchh
Q 008796 283 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVR 358 (553)
Q Consensus 283 ~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr 358 (553)
.+..+|..+...|+|++|...|.++++...+......++.++|.+|...|++++ +.+++.+.-.. .
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~--------~-- 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH--------D-- 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS--------T--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC--------c--
Confidence 467889999999999999999999999887766677899999999999999887 55555532111 1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
....+++.+|.++..+|++++|+..|+++++..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 136789999999999999999999999999874
No 164
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.41 E-value=6e-07 Score=96.66 Aligned_cols=211 Identities=13% Similarity=0.034 Sum_probs=77.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHA 322 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~ 322 (553)
..||.+++..|++.+|++.|.++ +| ...+..+|..+...|+|++|..++..+.+. ...+.+..
T Consensus 36 s~La~A~l~~g~~~eAIdsfika-------~D------~~~y~~V~~~ae~~g~~EeAi~yl~~ark~----~~~~~i~~ 98 (449)
T 1b89_A 36 SQLAKAQLQKGMVKEAIDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHcC-------CC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CccchhHH
Confidence 47788889999999999999653 34 225677888899999999999999977663 22356678
Q ss_pred HHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHH
Q 008796 323 YAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVS 402 (553)
Q Consensus 323 NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA 402 (553)
.++.+|...|+.+. +.++++. + + ..+++++|..++..|+|++|+.+|.++
T Consensus 99 ~Li~~Y~Klg~l~e---~e~f~~~----p----n----~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------- 148 (449)
T 1b89_A 99 ELIFALAKTNRLAE---LEEFING----P----N----NAHIQQVGDRCYDEKMYDAAKLLYNNV--------------- 148 (449)
T ss_dssp ----------CHHH---HTTTTTC----C------------------------CTTTHHHHHHHT---------------
T ss_pred HHHHHHHHhCCHHH---HHHHHcC----C----c----HHHHHHHHHHHHHcCCHHHHHHHHHHh---------------
Confidence 88999999888765 2223322 1 1 138999999999999999999999866
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHH---------HHHhCCh-H---------HHHHHHHHHHHHHHHcCCchHHHH
Q 008796 403 QYLTILGNLALALHDTVQAREILRSSLTL---------AKKLYDI-P---------TQIWALSVLTALYQQLGDRGNEME 463 (553)
Q Consensus 403 ~aL~~LG~i~lalGd~~eA~~~l~~AL~L---------ArklgD~-~---------~qa~aL~~Lg~ly~alGd~~~A~e 463 (553)
.....||.++..+|++.+|.+.+++|-.. +-++|+- . ....-+..+...|...|.+++|..
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHH
Confidence 24567888889999999988887777322 1111210 0 001112346688999999999999
Q ss_pred HHHHH-------HHHHHHHhhHHHHhh--cchhhHHHHhhhcchhhc
Q 008796 464 NDEYR-------RKKLDELQKRLADAY--SSIHHIELISKVKLEVQQ 501 (553)
Q Consensus 464 ~~e~a-------~~~~d~L~~~~~~A~--~~~~h~~l~~~~~~~~~~ 501 (553)
.++.+ +.++..+.--++.-. ..-+|-. .-|.|+.+..
T Consensus 229 lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~-~~~~~ini~k 274 (449)
T 1b89_A 229 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE-LFWSRVNIPK 274 (449)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHH-HHSTTSCHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHhcCcH
Confidence 99888 677777754444433 4456664 4577776644
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.39 E-value=1.3e-06 Score=92.78 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=116.2
Q ss_pred HcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccc--cchhHHHHHHHH
Q 008796 293 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTI--NGVREEASLHFA 366 (553)
Q Consensus 293 alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~--~~lr~eA~aL~~ 366 (553)
.+++|++|...|..++.. ....+.++.++|.+|...|+++. +.+|+.+.....+..+.. ......+.++++
T Consensus 246 ~l~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 566677777776644432 34578899999999999999987 888888754431000000 000113789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q 008796 367 YGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALS 446 (553)
Q Consensus 367 LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~ 446 (553)
+|.++..+|+|++|+.+|.+||++.- . -+.+++++|.++..+|++.+|...+++|+.+.. .-..++.
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~p---~----~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P------~~~~a~~ 389 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLDS---A----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP------QNKAARL 389 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCC---c----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHH
Confidence 99999999999999999999999842 2 267899999999999999999999999998742 2235778
Q ss_pred HHHHHHHHcCCchHHHH
Q 008796 447 VLTALYQQLGDRGNEME 463 (553)
Q Consensus 447 ~Lg~ly~alGd~~~A~e 463 (553)
.|+.++...|++.+|..
T Consensus 390 ~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 390 QISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999998877654
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=3.3e-06 Score=72.08 Aligned_cols=102 Identities=14% Similarity=0.027 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+..++.+|..+...|++++|...|++++++. .+......++..+|.++...|++.+|...+++++.+. ++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~-- 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GG-- 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SC--
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---cc--
Confidence 57899999999999999999999999998763 2334457899999999999999999999999999872 22
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
...++..+|.++...|++++|...++.+...
T Consensus 98 -~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 -DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2567789999999999999999999888765
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=4.2e-06 Score=71.42 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhccccccccccc
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTIN 355 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~ 355 (553)
.+..+..+|..+...|+|++|...|.++++...+......++.++|.+|...|++++ +.+++.+. +.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~-------- 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GG-------- 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-cc--------
Confidence 467889999999999999999999999998776665668999999999999999887 55555541 11
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 356 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
...+++.+|.++...|++++|..+|++++++.
T Consensus 98 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 98 ----DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 25788999999999999999999999999884
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.37 E-value=4.3e-06 Score=68.46 Aligned_cols=99 Identities=22% Similarity=0.198 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++.+|.++...|++++|...+.+++++.. . ...++..+|.++...|++++|...+++++.+. +
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~--- 74 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---N----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P--- 74 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---C----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---C---
Confidence 478899999999999999999999999998741 1 24578899999999999999999999998762 1
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
....++..++.+|...|++++|...++.+...
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 12356789999999999999999999887765
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=1.7e-06 Score=74.83 Aligned_cols=96 Identities=14% Similarity=-0.025 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
+..+|.+++..|++++|+..+++++++ .|+ -+.++..+|.++..+|++++|+..|++|+++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------- 82 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------- 82 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------
Confidence 356777888999999999999998876 455 245788899999999999999999987776422
Q ss_pred HHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 322 AYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 322 ~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
. -..+++++|.++...|++++|+..|++++++.
T Consensus 83 -------------------------~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 83 -------------------------K------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp -------------------------T------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -------------------------C------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1 23467788888888888888888888888763
No 170
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=3.6e-06 Score=87.36 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc----------ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG----------NLQLVSQYLTILGNLALALHDTVQAREILRSS 428 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG----------dr~leA~aL~~LG~i~lalGd~~eA~~~l~~A 428 (553)
..+.+++.+|..++.+|+|++|..+|++|+++.. ... .....+.+++++|.++..+|++.+|.+++++|
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE-GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-cCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3688899999999999999999999999999864 321 34566889999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 429 LTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 429 L~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
+.+. +....++..+|.+|..+|++++|.+.++.+.+.
T Consensus 300 l~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 300 LEID------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9862 234678899999999999999999999988876
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=2.4e-07 Score=99.39 Aligned_cols=123 Identities=12% Similarity=0.014 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccc
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTING 356 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~ 356 (553)
+..+..+|..+...|+|++|..+|.+|+++..+ .+.++.++|.+|...|++++ +.+|+++- +.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~--------- 72 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KK--------- 72 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TT---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC---------
Confidence 445667888889999999999999999988543 37889999999999999987 66776651 11
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHH--HHHCCChHHHHHHHH
Q 008796 357 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL--ALALHDTVQAREILR 426 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i--~lalGd~~eA~~~l~ 426 (553)
-+.+++++|.++..+|++++|+..|++|+++.- ... .++..+|.+ +..+|++++|.+.++
T Consensus 73 ---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~------~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 ---YIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDK------DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCT------THHHHHHHHHHHHHHHHHCCC-----
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 357899999999999999999999999999842 222 255667777 888899999999998
No 172
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.31 E-value=4.7e-06 Score=69.35 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
-+.+++.+|.++..+|++++|+.+|++++++.- . + ..++..||.++...|++++|.+.+++|+.+..+.++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~--~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-D--Y----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-T--C----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 357899999999999999999999999999842 1 2 34889999999999999999999999999999998876
Q ss_pred HHHHHH
Q 008796 440 TQIWAL 445 (553)
Q Consensus 440 ~qa~aL 445 (553)
......
T Consensus 79 ~~~~l~ 84 (100)
T 3ma5_A 79 DLSELQ 84 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=2.1e-07 Score=99.82 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 240 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 240 ~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
..+.++|.++..+|+|++|++.+++|+++ .|+ .+.++.++|.++..+|+|++|...|.+|+++.. ..+.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~---~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~ 75 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPS-----NAIYYGNRSLAYLRTECYGYALGDATRAIELDK---KYIK 75 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---TCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCc-----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CCHH
Confidence 34556777789999999999999999998 454 266899999999999999999999999998743 3467
Q ss_pred HHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHH--HHHcCCHHHHHHHHH--------
Q 008796 320 CHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL--LMRQQDFQEARNRLA-------- 385 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~--~~~qGr~~EA~~~L~-------- 385 (553)
++.++|.+|...|++++ +.+|+++.-. ...++..+|.+ +..+|++++|...++
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-------------~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 142 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKVKPH-------------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 142 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-------------CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhh
Confidence 88999999999999987 6777765221 12355667766 889999999999999
Q ss_pred ---HHHHHHHHhccChH----hHHHHHHHHHHHHHHCCCh--HHHHHHHHHHHHHHHH-----------------hCChH
Q 008796 386 ---KGLQIAHNHMGNLQ----LVSQYLTILGNLALALHDT--VQAREILRSSLTLAKK-----------------LYDIP 439 (553)
Q Consensus 386 ---eAL~Lar~elGdr~----leA~aL~~LG~i~lalGd~--~eA~~~l~~AL~LArk-----------------lgD~~ 439 (553)
+++++...-.|... .....+..+.+.+...+.. ..+...+..+..+..+ +||.+
T Consensus 143 ~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~~~~~~~~~~~~vigDiH 222 (477)
T 1wao_1 143 LDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTH 222 (477)
T ss_dssp CTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCSSCEEEEECBCT
T ss_pred hhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeEEeecCCCcceEEEeCCC
Confidence 66666422122211 1233444555555555543 3455678888777654 36777
Q ss_pred HHHHHHHHH
Q 008796 440 TQIWALSVL 448 (553)
Q Consensus 440 ~qa~aL~~L 448 (553)
++...+..+
T Consensus 223 G~~~~l~~~ 231 (477)
T 1wao_1 223 GQFYDLLNI 231 (477)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 776555443
No 174
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=6.2e-06 Score=67.00 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 240 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 240 ~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
..+..+|.++...|++++|++.+.+++++. |+ -+.++..+|..+..+|++++|...|.++++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------- 69 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD---PH-----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------- 69 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CC-----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------
Confidence 345566666677777777777777766652 32 133566666666667777777766665554311
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 320 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
. ...+++.+|.++...|++++|...+.+++++.
T Consensus 70 ---------------------------~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 70 ---------------------------D------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp ---------------------------T------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ---------------------------c------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 0 23567788888888888888888888887763
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.28 E-value=1.3e-06 Score=89.00 Aligned_cols=149 Identities=17% Similarity=0.043 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhH
Q 008796 280 ESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVRE 359 (553)
Q Consensus 280 ~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~ 359 (553)
.+..+..+|..+...|+|++|..+|.+|++...+.. .+...|+++ .+... +
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----------~~~~~~~~~---~~~~~---l------------ 228 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----------MFQLYGKYQ---DMALA---V------------ 228 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----------HHTCCHHHH---HHHHH---H------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----------hhhhcccHH---HHHHH---H------------
Confidence 466788999999999999999999999998765422 011111111 11100 0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
...+++++|.++..+|+|++|+.+|+++|++.- .-+.+++++|.++..+|++++|...+++|+.+.....
T Consensus 229 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~--- 298 (338)
T 2if4_A 229 KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE-------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK--- 298 (338)
T ss_dssp HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---
Confidence 123556666666666666666666666665521 1134556666666666666666666666666654321
Q ss_pred HHHHHHHHHHHH-HHHcCCchHHHHHHHHHHH
Q 008796 440 TQIWALSVLTAL-YQQLGDRGNEMENDEYRRK 470 (553)
Q Consensus 440 ~qa~aL~~Lg~l-y~alGd~~~A~e~~e~a~~ 470 (553)
.+...|+.+ ....+..+++...|.....
T Consensus 299 ---~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 299 ---AIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp --------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 223333333 4444555555555544433
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=8.3e-07 Score=71.81 Aligned_cols=99 Identities=12% Similarity=0.159 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
+.+++.+|.++...|++++|..++.+++++.. .+ ..++..+|.++...|++++|...+++++.+.. + ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~-~~ 74 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP---EE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIE---D-EY 74 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC---C-TT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc---c-cc
Confidence 34678899999999999999999999998841 22 45788999999999999999999999997632 2 11
Q ss_pred HHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Q 008796 441 QIWALSVLTALYQQL-GDRGNEMENDEYRRK 470 (553)
Q Consensus 441 qa~aL~~Lg~ly~al-Gd~~~A~e~~e~a~~ 470 (553)
...++..+|.++... |++++|.++++....
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 345788999999999 999999998887653
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=3.8e-06 Score=71.18 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=68.0
Q ss_pred HcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHH
Q 008796 293 SVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYG 368 (553)
Q Consensus 293 alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG 368 (553)
.+|++++|..+|.+|+++..+....+.++.++|.+|...|++++ +.+++.+.- . -..+++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~------------~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-N------------HQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T------------CHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C------------chHHHHHHH
Confidence 47899999999999998654445678899999999999999887 666665421 1 257889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 008796 369 LLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 369 ~~~~~qGr~~EA~~~L~eAL~La 391 (553)
.++...|++++|+..+++++++.
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999985
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=4.6e-06 Score=82.38 Aligned_cols=101 Identities=17% Similarity=0.066 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++.+|.+++..|+|++|...|++++++.- . .+.++.++|.++..+|++++|...+++|+.+. +
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p 69 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP---L----VAVYYTNRALCYLKMQQPEQALADCRRALELD------G 69 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------T
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---c----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------C
Confidence 467899999999999999999999999999841 1 35688999999999999999999999999762 2
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
.-..++..+|.+|...|++++|...++.+.+..-
T Consensus 70 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3346789999999999999999999999887654
No 179
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.19 E-value=0.0001 Score=88.62 Aligned_cols=228 Identities=15% Similarity=0.065 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Q 008796 176 LVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF 255 (553)
Q Consensus 176 Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~ 255 (553)
-+|.--+......|.+++|+++|.+| ++.+. ...+|.+....|+|
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----------dD~sa------------------------y~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----------DDPSS------------------------YMEVVQAANTSGNW 1150 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc-----------CChHH------------------------HHHHHHHHHHcCCH
Confidence 45666677777888888888888665 11111 23466666778888
Q ss_pred HHHHHHHHHHHHHHHH-------------CCc-------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh
Q 008796 256 VEAQEALVQMKNWFIR-------------FPT-------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 315 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~-------------~~d-------l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~ 315 (553)
++|++++..|.+.-+. .+. +.....+ ....+|.++...|+|++|..+|..|
T Consensus 1151 EEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~a-d~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred HHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 8888888776644311 011 0001112 3346888888888888888888854
Q ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccc------------cc-------cchhHHHHHHHHHHHHHHHcCC
Q 008796 316 MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKD------------TI-------NGVREEASLHFAYGLLLMRQQD 376 (553)
Q Consensus 316 g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g------------~~-------~~lr~eA~aL~~LG~~~~~qGr 376 (553)
.-...+|.+|...|++++ |.+.++...+... .+ .....-+..+..++..|...|.
T Consensus 1222 ---~ny~rLA~tLvkLge~q~---AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQA---AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY 1295 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHH---HHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC
Confidence 356677778877777553 4444433311100 00 0000012233445555555555
Q ss_pred HHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH-----HHHHHHHHHHHH
Q 008796 377 FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP-----TQIWALSVLTAL 451 (553)
Q Consensus 377 ~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~-----~qa~aL~~Lg~l 451 (553)
++||..+++.+|.+-+ -.......||.++..- .++.-+++++ ....++.-+. .+++....+.-+
T Consensus 1296 feEAI~LlE~aL~Ler-------aH~gmftELaiLyaKy-~peklmEhlk---~f~~rini~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1296 FEELITMLEAALGLER-------AHMGMFTELAILYSKF-KPQKMREHLE---LFWSRVNIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHHHHHHHHhccCh-------hHhHHHHHHHHHHHhC-CHHHHHHHHH---HHHHhcccchHhHHHHHHHHHHHHHHH
Confidence 6666555555555421 1122333344433332 2222222111 0112222222 455556677778
Q ss_pred HHHcCCchHHHHH
Q 008796 452 YQQLGDRGNEMEN 464 (553)
Q Consensus 452 y~alGd~~~A~e~ 464 (553)
|..-|++++|...
T Consensus 1365 Y~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1365 YDKYEEYDNAIIT 1377 (1630)
T ss_pred HHhcccHHHHHHH
Confidence 8888888888743
No 180
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.18 E-value=1.5e-05 Score=71.49 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHH-HHHCCCh--HHHHHHHHHHHHHHHHhCC
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNL-ALALHDT--VQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i-~lalGd~--~eA~~~l~~AL~LArklgD 437 (553)
+.+++.+|.++...|++++|..+|++++++.- .+ ..++..+|.+ +...|++ .+|..++++++.+.
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~----- 111 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRG---EN----AELYAALATVLYYQASQHMTAQTRAMIDKALALD----- 111 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC---SC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-----
Confidence 46889999999999999999999999999852 22 4578899999 8899998 99999999999873
Q ss_pred hHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q 008796 438 IPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 438 ~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~ 472 (553)
+....++..+|.+|...|++++|.+.++.+....
T Consensus 112 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 112 -SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred -CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 1224577899999999999999999998887653
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=8.1e-06 Score=66.68 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch---h
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK---S 315 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~---~ 315 (553)
+..+.++|.++...|+|++|++.+.+++++ .|+ -+.++.++|.++..+|++++|...|.+|+++..+. .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQ-----NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHH
Confidence 445788999999999999999999999987 444 25588999999999999999999999999876553 3
Q ss_pred hHHHHHHHHHHHHHHhCChHH
Q 008796 316 MQAMCHAYAAVSYFCIGDAES 336 (553)
Q Consensus 316 g~A~aL~NLA~vyl~~Gd~e~ 336 (553)
....++.++|.++...|+++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHhHhh
Confidence 357788999999999887553
No 182
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.13 E-value=1.6e-05 Score=62.72 Aligned_cols=84 Identities=25% Similarity=0.250 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.+++.+|.++...|++++|..++++++++.. . ...++..+|.++...|++++|...+++++.+. +
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---N----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------P 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---T----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---C----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------C
Confidence 578899999999999999999999999998841 1 24678999999999999999999999999873 2
Q ss_pred HHHHHHHHHHHHHHHcC
Q 008796 440 TQIWALSVLTALYQQLG 456 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alG 456 (553)
....+...||.++...|
T Consensus 75 ~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 22456778888887655
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=2.1e-05 Score=65.83 Aligned_cols=81 Identities=22% Similarity=0.169 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
+.+++.+|.++...|++++|...|++++++.- ..+.++..||.++...|++++|...+++++.+....++...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-------TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQV 91 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHH
Confidence 57899999999999999999999999998841 12457899999999999999999999999999988887655
Q ss_pred HHHHHHHH
Q 008796 441 QIWALSVL 448 (553)
Q Consensus 441 qa~aL~~L 448 (553)
.......|
T Consensus 92 ~~~l~~~l 99 (115)
T 2kat_A 92 VKELQVFL 99 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44433333
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.08 E-value=6.3e-06 Score=69.82 Aligned_cols=90 Identities=11% Similarity=-0.019 Sum_probs=71.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 008796 373 RQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALY 452 (553)
Q Consensus 373 ~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly 452 (553)
.+|++++|+.+|++++++. ..+ ...+.++..||.++..+|++++|..++++|+.+. ++ ...++..+|.++
T Consensus 2 ~~g~~~~A~~~~~~al~~~---~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~---~~~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG---LQG-KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PN---HQALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSC---CCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT---CHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC---CCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC---chHHHHHHHHHH
Confidence 4689999999999999872 112 4457789999999999999999999999999873 22 256788999999
Q ss_pred HHcCCchHHHHHHHHHHHHH
Q 008796 453 QQLGDRGNEMENDEYRRKKL 472 (553)
Q Consensus 453 ~alGd~~~A~e~~e~a~~~~ 472 (553)
...|++++|.+.++.+....
T Consensus 72 ~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887653
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.04 E-value=1.3e-05 Score=64.66 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
+..+|.++...|++++|+..+.+++++ .|+ .+.++..+|.++..+|++++|...|.++++...+ .....++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 79 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL---DPE-----ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVW 79 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH---CCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh---CcC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHH
Confidence 457788889999999999999999987 344 2457889999999999999999999999987654 2246788
Q ss_pred HHHHHHHHHh-CChHHHHHHHH
Q 008796 322 AYAAVSYFCI-GDAESSSQAID 342 (553)
Q Consensus 322 ~NLA~vyl~~-Gd~e~~~qAL~ 342 (553)
.++|.+|... |++++..+.+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999 99887444333
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.03 E-value=8.8e-06 Score=82.89 Aligned_cols=142 Identities=8% Similarity=-0.048 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCc---------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPT---------ILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAA 308 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~d---------l~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL 308 (553)
.+..+.++|.++...|+|.+|+..|.+|+++....+. ........+++++|.++..+|+|++|..+|.+|+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566789999999999999999999999988533221 0001112488999999999999999999999999
Q ss_pred HHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 008796 309 KITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLL-LMRQQDFQEARNRLAKG 387 (553)
Q Consensus 309 ~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~-~~~qGr~~EA~~~L~eA 387 (553)
++.. ..+.++.++|.+|...|++++....+...-.+. + .-..++..++.+ ....+..++|+..|.++
T Consensus 258 ~~~p---~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p--------~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 258 TEEE---KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-P--------DDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HHCT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-C--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8754 336788999999999999887444433333221 1 023566777777 45567788999999998
Q ss_pred HHHH
Q 008796 388 LQIA 391 (553)
Q Consensus 388 L~La 391 (553)
+...
T Consensus 326 l~~~ 329 (338)
T 2if4_A 326 FKGK 329 (338)
T ss_dssp ----
T ss_pred hCCC
Confidence 8775
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.99 E-value=4.3e-05 Score=60.12 Aligned_cols=83 Identities=17% Similarity=0.044 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQA 318 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A 318 (553)
...+.++|.++...|++++|++.+.+++++. |+ -+.++..+|.++..+|++++|..+|.++++...+ ..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~ 77 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PN-----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NA 77 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CH
Confidence 4456789999999999999999999999873 44 2457889999999999999999999999987533 35
Q ss_pred HHHHHHHHHHHHhC
Q 008796 319 MCHAYAAVSYFCIG 332 (553)
Q Consensus 319 ~aL~NLA~vyl~~G 332 (553)
.++.++|.++...|
T Consensus 78 ~~~~~l~~~~~~~g 91 (91)
T 1na3_A 78 EAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 67788999887765
No 188
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.89 E-value=0.0021 Score=65.48 Aligned_cols=238 Identities=13% Similarity=0.065 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008796 174 YALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRS 253 (553)
Q Consensus 174 ~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~G 253 (553)
-+.-|+-.++- ...+.++|.+.++++|.. .+.. ++.| -| +-.+|.+++. .
T Consensus 34 ~~~~~~~a~~~--~~e~s~~aL~~t~~~L~~---------nP~~--------~taW---n~---R~~~L~~l~~-----~ 83 (306)
T 3dra_A 34 QIMGLLLALMK--AEEYSERALHITELGINE---------LASH--------YTIW---IY---RFNILKNLPN-----R 83 (306)
T ss_dssp HHHHHHHHHHH--TTCCSHHHHHHHHHHHHH---------CTTC--------HHHH---HH---HHHHHHTCTT-----S
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHHHHHH---------CcHH--------HHHH---HH---HHHHHHHccc-----c
Confidence 34444444333 234446888888888888 2222 4444 12 4444433332 3
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHccchhhHHHHHHHHHH
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYA----HSV---GCYSEAAFHYVEAAKITESKSMQAMCHAYAAV 326 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~----~al---G~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~ 326 (553)
++.++++.+..++.+ +|.- ..+.+..|.+. ... +++++++..+.++++.... -..+..+-++
T Consensus 84 ~~~eeL~~~~~~L~~---nPk~-----y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk---ny~aW~~R~~ 152 (306)
T 3dra_A 84 NLYDELDWCEEIALD---NEKN-----YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK---NHHVWSYRKW 152 (306)
T ss_dssp CHHHHHHHHHHHHHH---CTTC-----CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH---Cccc-----HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Confidence 999999999999875 4551 23666666666 556 7899999999999875322 2345666677
Q ss_pred HHHHhCChH--H----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHh
Q 008796 327 SYFCIGDAE--S----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD------FQEARNRLAKGLQIAHNH 394 (553)
Q Consensus 327 vyl~~Gd~e--~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr------~~EA~~~L~eAL~Lar~e 394 (553)
+....|.++ + +.+++++- +- =..+++..|.+....|+ ++++++++.+++.+.
T Consensus 153 vl~~l~~~~~~~EL~~~~~~i~~d-~~------------N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--- 216 (306)
T 3dra_A 153 LVDTFDLHNDAKELSFVDKVIDTD-LK------------NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC--- 216 (306)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHC-TT------------CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHhcccChHHHHHHHHHHHHhC-CC------------CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC---
Confidence 777788765 3 44544421 11 24788999999999988 999999999999883
Q ss_pred ccChHhHHHHHHHHHHHHHHCCChHHH-HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q 008796 395 MGNLQLVSQYLTILGNLALALHDTVQA-REILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLD 473 (553)
Q Consensus 395 lGdr~leA~aL~~LG~i~lalGd~~eA-~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d 473 (553)
-.| ..+.+.++.++...|+..++ .+.+.+.+.+- + ....-..++..|+++|...|+.++|.+.++....+.|
T Consensus 217 p~n----~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-~--~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 217 PQN----PSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-K--DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp SSC----HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG-G--TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCC----ccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc-C--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 455 34678899999999985443 34444444321 0 0122345789999999999999999999988765444
Q ss_pred HH
Q 008796 474 EL 475 (553)
Q Consensus 474 ~L 475 (553)
-+
T Consensus 290 pi 291 (306)
T 3dra_A 290 PI 291 (306)
T ss_dssp GG
T ss_pred hH
Confidence 33
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.88 E-value=7.7e-05 Score=62.35 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHh
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQL 400 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~l 400 (553)
+.+++.+|.++..+|++++|+..|++++++.. ..++...
T Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~ 91 (115)
T 2kat_A 53 SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ-SRGDQQV 91 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccccHHH
Confidence 45788999999999999999999999999974 5666443
No 190
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.81 E-value=4.1e-05 Score=82.46 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHH
Q 008796 283 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEAS 362 (553)
Q Consensus 283 ~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~ 362 (553)
..+.+|..+...|.|++|..+|.++ .-..++|.++...|++++ |.+.++..+ ...
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~---AVea~~KA~-----------~~~ 178 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQA---AVDGARKAN-----------STR 178 (449)
T ss_dssp -------------CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHH---HHHHHHHHT-----------CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHH---HHHHHHHcC-----------Cch
Confidence 5566666666666666666666633 244555666666666554 222222221 124
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHH
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQI 442 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa 442 (553)
+|...+.++...|+++.|..+... |. ..+.-+..+...|...|.+.+|..++++||.+= +...
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~-L~----------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le------~ah~ 241 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLH-IV----------VHADELEELINYYQDRGYFEELITMLEAALGLE------RAHM 241 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTT-TT----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST------TCCH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHH-HH----------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc------HHHH
Confidence 555566666666666666443332 11 112224457889999999999999999998653 3334
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 443 WALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 443 ~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
.....|+-+|..- .|++-+++.+.+-
T Consensus 242 ~~ftel~il~~ky-~p~k~~ehl~~~~ 267 (449)
T 1b89_A 242 GMFTELAILYSKF-KPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 4566778888665 5888888777554
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.81 E-value=0.00022 Score=58.99 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
+.++..+|.++..+|+|++|..+|.+|+++ .|. -
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------------------------~p~------------~ 40 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET----------------------------------DPD------------Y 40 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------STT------------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------CCC------------c
Confidence 456777788888888888888887766543 111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTIL 408 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~L 408 (553)
..+++.+|.++...|++++|+..|++++++.. ..++..........|
T Consensus 41 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 41 VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR-EEGTQKDLSELQDAK 87 (100)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh-cCCchhHHHHHHHHH
Confidence 35789999999999999999999999999985 677765554443333
No 192
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.71 E-value=0.0008 Score=69.15 Aligned_cols=172 Identities=12% Similarity=0.009 Sum_probs=114.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-hh--hHHH
Q 008796 243 ENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KS--MQAM 319 (553)
Q Consensus 243 enLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-~~--g~A~ 319 (553)
..+|.++...|++++|++.+.+.+.. .|. .+...+...+..++..+|+.+.|...++...+...+ .. ....
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~---~~~---~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l 177 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDN---DEA---EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTS---SCS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc---CCC---cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHH
Confidence 36778889999999999999887442 221 123446678889999999999999999977655442 12 3334
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCh-
Q 008796 320 CHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNL- 398 (553)
Q Consensus 320 aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr- 398 (553)
....-|++.+..|. +.+..|..++.++.+..+ + ..-...+.+ ++..+|++++|...++..+++.- +.++.
T Consensus 178 ~~Laea~v~l~~g~-~~~q~A~~~f~El~~~~p---~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p-~~~~k~ 248 (310)
T 3mv2_B 178 LNLAESYIKFATNK-ETATSNFYYYEELSQTFP---T-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYY-SVEQKE 248 (310)
T ss_dssp HHHHHHHHHHHHTC-STTTHHHHHHHHHHTTSC---S-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHH-HTTTCH
T ss_pred HHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhCC---C-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcc-cccccc
Confidence 44444667887773 124455555555533321 1 011334444 89999999999999998777742 22221
Q ss_pred ---HhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 399 ---QLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 399 ---~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
..-+.+|.++..+...+|+ +|.++++++..+
T Consensus 249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3457889899889999998 677777766554
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.66 E-value=0.00019 Score=63.48 Aligned_cols=111 Identities=9% Similarity=-0.027 Sum_probs=84.1
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH-
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC- 330 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~- 330 (553)
..++.+|++.+++|.+.- .++ +. +|.++...+.+++|..+|++|.+. +.+.+..+||.+|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~------a~----lg~~y~~g~~~~~A~~~~~~Aa~~-----g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMF------GC----LSLVSNSQINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTT------HH----HHHHTCTTSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHcCC--CHh------hh----HHHHHHcCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHcC
Confidence 356788888888887542 222 22 999999889999999999999875 567899999999987
Q ss_pred ---hCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 008796 331 ---IGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQI 390 (553)
Q Consensus 331 ---~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~----qGr~~EA~~~L~eAL~L 390 (553)
.++++ +|+..++..-+ .+-+.+.+++|.+|.. .+++++|+.+|++|.+.
T Consensus 71 ~g~~~d~~---~A~~~~~~Aa~--------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 71 KYVKKDLR---KAAQYYSKACG--------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHH---HHHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCccHH---HHHHHHHHHHc--------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 44544 44444444311 1245788999999999 99999999999999654
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.63 E-value=0.00031 Score=62.17 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH-
Q 008796 295 GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR- 373 (553)
Q Consensus 295 G~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~- 373 (553)
.++++|..+|++|.+.- +.... +|.+|...+..++ |+..++..-+ .+-+.+.+++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~------lg~~y~~g~~~~~---A~~~~~~Aa~--------~g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC------LSLVSNSQINKQK---LFQYLSKACE--------LNSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH------HHHHTCTTSCHHH---HHHHHHHHHH--------TTCHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh------HHHHHHcCCCHHH---HHHHHHHHHc--------CCCHHHHHHHHHHHHcC
Confidence 46889999999888642 32222 8888877655554 5555444311 1245788999999998
Q ss_pred ---cCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHH----CCChHHHHHHHHHHHHH
Q 008796 374 ---QQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALA----LHDTVQAREILRSSLTL 431 (553)
Q Consensus 374 ---qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~la----lGd~~eA~~~l~~AL~L 431 (553)
.+++++|..+|++|.+. |+ +.+..+||.+|.. .+|+.+|...+++|...
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~-----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL-----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHcC-----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 89999999999998543 44 5678899999999 89999999999988754
No 195
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.52 E-value=0.013 Score=62.08 Aligned_cols=188 Identities=14% Similarity=-0.010 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch--hhHHHHHHHHHHHHHHhCChHH-----HHHHHHhhcccccccccc
Q 008796 282 MIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--SMQAMCHAYAAVSYFCIGDAES-----SSQAIDLIGPVYQMKDTI 354 (553)
Q Consensus 282 ~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~--~g~A~aL~NLA~vyl~~Gd~e~-----~~qAL~L~r~lgd~~g~~ 354 (553)
.+...||.++...|++++-...+......+... .-.|-..+++=..+....+..+ +..+++-.+.. +
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~----- 93 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE-K----- 93 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-T-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-H-----
Confidence 356678888899999999998887554444432 2244445555555544333222 33444333322 0
Q ss_pred cchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 008796 355 NGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 355 ~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArk 434 (553)
-..-+...-..+|.+|+..|+|++|...+.+.++-++ ...|....-.+...-..+|..+|+...+.+.+.+|.+.+..
T Consensus 94 -r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~-~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 94 -RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELK-KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 1111344445899999999999999999999999985 56666777788888899999999999999999999999999
Q ss_pred h-CChHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhh
Q 008796 435 L-YDIPTQIWALSVLTALYQ-QLGDRGNEMENDEYRRKKLDELQK 477 (553)
Q Consensus 435 l-gD~~~qa~aL~~Lg~ly~-alGd~~~A~e~~e~a~~~~d~L~~ 477 (553)
+ .++..++.....-|.+|. ..|++..|...|-.+..-+++.+.
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~ 216 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDS 216 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCH
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccccc
Confidence 9 889999999999999999 899999999888776555554443
No 196
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.47 E-value=0.007 Score=62.12 Aligned_cols=187 Identities=12% Similarity=-0.050 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH
Q 008796 281 SMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE 360 (553)
Q Consensus 281 A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e 360 (553)
..++..+|.++...|++++|+..+.+++.... ..+..-+..-++.+|+..|+.+....-+.-+..... +...-...
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~---d~~~~~d~ 175 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE---DTVSGDNE 175 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC---HHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---cccccchH
Confidence 34567999999999999999999998754322 135566667788999999998875555544444310 00000113
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCCh
Q 008796 361 ASLHFAYGLLLMRQQ--DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 438 (553)
Q Consensus 361 A~aL~~LG~~~~~qG--r~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~ 438 (553)
..+...-|++.+.+| ++++|...|++... ..++ ......|.+ ++..+|++.+|...++..+.+.-+.+..
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~----~~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k 247 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQ----TFPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQK 247 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT----TSCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hCCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccccc
Confidence 344445577788888 99999999999532 2333 122233333 8999999999999999776665332111
Q ss_pred ----HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhHHHHhhcchhhHHHHhh
Q 008796 439 ----PTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQKRLADAYSSIHHIELISK 494 (553)
Q Consensus 439 ----~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~~~~~~A~~~~~h~~l~~~ 494 (553)
+.-..++.++..+...+|+ +|.++.++.. ...|.|..+.+.
T Consensus 248 ~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~-------------~~~P~hp~i~d~ 292 (310)
T 3mv2_B 248 ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV-------------KLDHEHAFIKHH 292 (310)
T ss_dssp HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH-------------HTTCCCHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH-------------HhCCCChHHHHH
Confidence 2335567677777778887 4443333222 145777766654
No 197
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.46 E-value=0.00071 Score=57.05 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 361 ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 361 A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
+.-.+.+|..++.+|+|..|...|++|++....+.......+.++..||.++..+|++..|..++++|+.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34568999999999999999999999999974322112455788999999999999999999999999976
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=0.00011 Score=68.54 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=66.0
Q ss_pred hhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHccchhhHHHH
Q 008796 251 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCY----------SEAAFHYVEAAKITESKSMQAMC 320 (553)
Q Consensus 251 ~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~y----------eeAl~~f~~AL~l~~d~~g~A~a 320 (553)
+.+.|++|++.+++|+++ .|+ -+.+++++|.+...++++ ++|...|++|+++.-+ .+.+
T Consensus 14 r~~~feeA~~~~~~Ai~l---~P~-----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A 82 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS---NPL-----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHhHHHHHHHHHHHHHHH---CCC-----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHH
Confidence 456789999999999887 455 245778888888887765 5888888888776432 3344
Q ss_pred HHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 321 HAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 321 L~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
+.|+|.+|...|.. .|- .. ++ .|++++|..+|++|+++-
T Consensus 83 ~~~LG~ay~~lg~l----------~P~--------~~--~a------------~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 83 VWCIGNAYTSFAFL----------TPD--------ET--EA------------KHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHH----------CCC--------HH--HH------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccc----------Ccc--------hh--hh------------hccHHHHHHHHHHHHHhC
Confidence 55556555554331 110 00 11 268999999999999994
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.29 E-value=0.00023 Score=66.36 Aligned_cols=87 Identities=17% Similarity=0.054 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCH----------HHH
Q 008796 189 GLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGF----------VEA 258 (553)
Q Consensus 189 G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~----------aeA 258 (553)
+.|++|++.++++++. .+. .+..+.++|.+....|++ ++|
T Consensus 16 ~~feeA~~~~~~Ai~l----------~P~--------------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eA 65 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS----------NPL--------------------DADNLTRWGGVLLELSQFHSISDAKQMIQEA 65 (158)
T ss_dssp HHHHHHHHHHHHHHHH----------CTT--------------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----------CCC--------------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHH
Confidence 4577777777777776 222 234467778888888775 588
Q ss_pred HHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHccc
Q 008796 259 QEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-----------CYSEAAFHYVEAAKITES 313 (553)
Q Consensus 259 l~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG-----------~yeeAl~~f~~AL~l~~d 313 (553)
+..|++|+++ .|+ -+.+++++|.++.++| +|++|..+|++|+++--+
T Consensus 66 i~~le~AL~l---dP~-----~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 66 ITKFEEALLI---DPK-----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHH---CTT-----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHh---CcC-----cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 8888888888 455 2447888888888775 899999999999987654
No 200
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.28 E-value=0.014 Score=61.34 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=95.7
Q ss_pred HHCCchhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH---hC-ChHH----HH
Q 008796 270 IRFPTILQACESMIEMLRGQYAHSVG---CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC---IG-DAES----SS 338 (553)
Q Consensus 270 r~~~dl~~~~~A~~~~lLG~~~~alG---~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~---~G-d~e~----~~ 338 (553)
+.-|+ ...|.-+++.|..+...+ .+.+|..+|++|+++--+ -+.++..++++|.. .+ .... +.
T Consensus 188 ~~~p~---~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~---~a~A~A~la~a~~~~~~~~~~~~~~~~~l~ 261 (372)
T 3ly7_A 188 KILPH---RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE---FTYARAEKALVDIVRHSQHPLDEKQLAALN 261 (372)
T ss_dssp HHSCS---SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred ccCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence 44555 234666777777777654 458999999999887544 22222233333321 11 1111 44
Q ss_pred HHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCCh
Q 008796 339 QAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 418 (553)
Q Consensus 339 qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~ 418 (553)
+++.....+. .....+.++..+|.++...|++++|...+++|+.+- + . +.++..+|.++.-.|++
T Consensus 262 ~a~~a~~a~~-------~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~-s--~~a~~llG~~~~~~G~~ 326 (372)
T 3ly7_A 262 TEIDNIVTLP-------ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M-S--WLNYVLLGKVYEMKGMN 326 (372)
T ss_dssp HHHHHHHTCG-------GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C-C--HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcc-------cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C-C--HHHHHHHHHHHHHCCCH
Confidence 5554332221 111257888999999999999999999999999992 1 1 45778999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008796 419 VQAREILRSSLTL 431 (553)
Q Consensus 419 ~eA~~~l~~AL~L 431 (553)
++|.+.+.+|+.+
T Consensus 327 ~eA~e~~~~AlrL 339 (372)
T 3ly7_A 327 REAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999988
No 201
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.11 E-value=0.12 Score=54.77 Aligned_cols=191 Identities=8% Similarity=-0.007 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch-hh
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK-SM 316 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~-~g 316 (553)
+=..+..||..+..+|++++-.+.+.+....+..+|- ...+-.+-+++-.+...-+..+.=...+..+++-+... ..
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~ 95 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISK--AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRT 95 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668888889999999999988888888777766 12223344444444444566666667777777655432 22
Q ss_pred --HHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 317 --QAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQI 390 (553)
Q Consensus 317 --~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~L 390 (553)
.......+|..|+..|++.+ +.+.+.-+..+.|. .-.-.++.....+|+.+|++.+++..|.+|.++
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~-------~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK-------NLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc-------hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 34466799999999999886 34444444443211 114566677788899999999999999999999
Q ss_pred HHHhc-cChHhHHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHHHHhCCh
Q 008796 391 AHNHM-GNLQLVSQYLTILGNLAL-ALHDTVQAREILRSSLTLAKKLYDI 438 (553)
Q Consensus 391 ar~el-Gdr~leA~aL~~LG~i~l-alGd~~eA~~~l~~AL~LArklgD~ 438 (553)
.. .+ .++...|..-..-|-++. ..+++.+|...+-+|+.-..+.++.
T Consensus 169 ~~-ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~ 217 (394)
T 3txn_A 169 AN-AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSV 217 (394)
T ss_dssp HH-HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHH
T ss_pred hc-cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccH
Confidence 85 56 889999999999999999 8999999999999999888777764
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.06 E-value=0.0013 Score=52.92 Aligned_cols=61 Identities=23% Similarity=0.157 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHH-HHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 365 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQ-YLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 365 ~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~-aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
+..|..+...|++++|...|++++++. -.+ .. ++..+|.++...|++++|...+++++.+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE---PVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC---SST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC---CCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 578999999999999999999999874 122 34 88999999999999999999999999773
No 203
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.80 E-value=0.024 Score=59.04 Aligned_cols=254 Identities=8% Similarity=0.003 Sum_probs=154.8
Q ss_pred chhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 008796 169 PKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAV 248 (553)
Q Consensus 169 p~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~ 248 (553)
+.+-..+.-|+-.++. ..++.++|.+.+++++.. ++.. ++.|- | +-.+|.
T Consensus 50 ~~~y~~~~~~~r~~~~--~~e~se~AL~lt~~~L~~---------nP~~--------ytaWn---~---R~~iL~----- 99 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAA--KEEKSERALELTEIIVRM---------NPAH--------YTVWQ---Y---RFSLLT----- 99 (349)
T ss_dssp CHHHHHHHHHHHHHHH--TTCCSHHHHHHHHHHHHH---------CTTC--------HHHHH---H---HHHHHH-----
T ss_pred CHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh---------Cchh--------HHHHH---H---HHHHHH-----
Confidence 3333444444444433 344567788888888877 2222 54551 1 333443
Q ss_pred HHhhC-CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHccchhhHHHHHHHHH
Q 008796 249 ELTRS-GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV-G-CYSEAAFHYVEAAKITESKSMQAMCHAYAA 325 (553)
Q Consensus 249 ~l~~G-r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~al-G-~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA 325 (553)
..| .+.++++.+..++. .+|.- ..+.+..|.+...+ + +++++++.+.+++.... + -..+..+-+
T Consensus 100 --~l~~~l~eEL~~~~~~L~---~nPKn-----y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-k--Ny~AW~~R~ 166 (349)
T 3q7a_A 100 --SLNKSLEDELRLMNEFAV---QNLKS-----YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-K--NYHTWAYLH 166 (349)
T ss_dssp --HTTCCHHHHHHHHHHHHH---TTCCC-----HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-T--CHHHHHHHH
T ss_pred --HhhhhHHHHHHHHHHHHH---hCCCc-----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-C--CHHHHHHHH
Confidence 345 59999999998874 45662 45788888888888 7 89999999998875332 1 223444455
Q ss_pred HHHHHhCChH----H-HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHH
Q 008796 326 VSYFCIGDAE----S-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD-------FQEARNRLAKGLQIAHN 393 (553)
Q Consensus 326 ~vyl~~Gd~e----~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr-------~~EA~~~L~eAL~Lar~ 393 (553)
++....|.++ + ..++++.+....... .. =..+++..|.+....|+ ++++++++.+++.+.
T Consensus 167 wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~---N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-- 238 (349)
T 3q7a_A 167 WLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GR---NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-- 238 (349)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TT---CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhccccccchhhHHHHHHHHHHHHHhC---CC---CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--
Confidence 5555555444 1 334444444321111 00 24789999999999987 789999999998873
Q ss_pred hccChHhHHHHHHHHHHHHHHCCChHH-----------------HHHHHHHHHHHHHHhC---ChHHHHHHHHHHHHHHH
Q 008796 394 HMGNLQLVSQYLTILGNLALALHDTVQ-----------------AREILRSSLTLAKKLY---DIPTQIWALSVLTALYQ 453 (553)
Q Consensus 394 elGdr~leA~aL~~LG~i~lalGd~~e-----------------A~~~l~~AL~LArklg---D~~~qa~aL~~Lg~ly~ 453 (553)
-+| ..+.+.+..+....|+... -.+...-++.+....+ ....=..++..|+++|.
T Consensus 239 -P~n----~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 313 (349)
T 3q7a_A 239 -PHN----VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFI 313 (349)
T ss_dssp -TTC----HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHH
T ss_pred -CCC----HHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHH
Confidence 445 2456777788888776510 0122333333333221 11233458899999999
Q ss_pred HcCCchHHHHHHHHHHHHHHHHhhH
Q 008796 454 QLGDRGNEMENDEYRRKKLDELQKR 478 (553)
Q Consensus 454 alGd~~~A~e~~e~a~~~~d~L~~~ 478 (553)
..|+..+|.+.++.-....|-+...
T Consensus 314 ~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 314 EQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp HTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred hcCCHHHHHHHHHHHHhhhChHHHH
Confidence 9999999999888876666655443
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.77 E-value=0.0068 Score=48.60 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=53.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESM-IEMLRGQYAHSVGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~-~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d 313 (553)
++|.++...|++++|++.+.+++++ .|+ -+. ++..+|.++..+|++++|..+|.+|+++..+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~---~p~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT---EPV-----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---CSS-----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---CCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 5677779999999999999999886 455 245 8899999999999999999999999987544
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.74 E-value=0.025 Score=59.44 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 008796 316 MQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMR----QQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 316 g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~----qGr~~EA~~~L~eAL~La 391 (553)
..|+-+.--|.-|+..++.+.+.+|.+++++.-..... -+.++-.++.+|.. .+.......-++++++..
T Consensus 194 ~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp GGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45555555566677778888777887777765322100 12333333433322 112233445556666644
Q ss_pred HHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 392 HNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 392 r~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
. .+......+.++..+|.+++..|++++|...+++|+.+- ++ ..++..+|.++...|++++|.++++.+..+
T Consensus 268 ~-a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 268 V-TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MS----WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp H-TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2 444446678889999999999999999999999999993 22 346688999999999999999999988776
Q ss_pred H
Q 008796 472 L 472 (553)
Q Consensus 472 ~ 472 (553)
.
T Consensus 340 ~ 340 (372)
T 3ly7_A 340 R 340 (372)
T ss_dssp S
T ss_pred C
Confidence 3
No 206
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.70 E-value=0.022 Score=47.73 Aligned_cols=80 Identities=6% Similarity=-0.111 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCH 321 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL 321 (553)
...||......++|.+|+.-+++|++.....+.. ....+.++..+|..+..+|++++|..++++|+++.-+. ..++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~ 83 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH---QRAN 83 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC-cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHH
Confidence 4578889999999999999999999998765321 22357899999999999999999999999999875443 3446
Q ss_pred HHHH
Q 008796 322 AYAA 325 (553)
Q Consensus 322 ~NLA 325 (553)
+|++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7766
No 207
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.36 Score=51.32 Aligned_cols=220 Identities=10% Similarity=-0.039 Sum_probs=150.3
Q ss_pred hhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHH
Q 008796 251 TRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-KSMQAMCHAYAAVSYF 329 (553)
Q Consensus 251 ~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-~~g~A~aL~NLA~vyl 329 (553)
..|++.+|++.+...-.-+|...|... ...+...+-..+...++++...+++. .|.-.+. .........+...-|+
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~~d~~s--~~r~l~~iv~l~~~~~~~~~l~e~i~-~Lskkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQASDLAS--SKEVLAKIVDLLASRNKWDDLNEQLT-LLSKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSTTT--CHHHHHHHHHHHHHHSCHHHHHHHHH-HHHTTTTTSHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhhccchhh--HHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHH
Confidence 457888998877665566666677422 35566777788889999999888775 2322111 1111222333344443
Q ss_pred Hh-CChHH--HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHH
Q 008796 330 CI-GDAES--SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLT 406 (553)
Q Consensus 330 ~~-Gd~e~--~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~ 406 (553)
.. ...+. ....++..+.+-. |...-..++|..-..|+.++...|++.+|.+.+.+-..-+. ..-+...-.....
T Consensus 105 ~~~~~~d~~~~~~~i~~l~~vte--~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~-~~~~~~~kve~~l 181 (445)
T 4b4t_P 105 KSSKSLDLNTRISVIETIRVVTE--NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY-GSMEMSEKIQFIL 181 (445)
T ss_dssp HHHCTTHHHHHHHHHHCCSSSSS--CCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-SSSCHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-hcccHHHHHHHHH
Confidence 21 22221 2233333333211 10111234688889999999999999999999999877664 4566777788888
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Q 008796 407 ILGNLALALHDTVQAREILRSSLTLAKKLY-DIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKLDELQ 476 (553)
Q Consensus 407 ~LG~i~lalGd~~eA~~~l~~AL~LArklg-D~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~L~ 476 (553)
....+++..+|+.+|...++++.+.+.... ++..++.-....|.+|...+++.+|..+|...........
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~ 252 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS 252 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC
Confidence 999999999999999999999987666554 5667888889999999999999999888877766655443
No 208
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.55 Score=49.90 Aligned_cols=190 Identities=12% Similarity=0.060 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-h-----
Q 008796 241 FLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES-K----- 314 (553)
Q Consensus 241 lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d-~----- 314 (553)
++..++.++...++++...+++.- +....+.+-......+...++.+.. ....+.. ....-+..... .
T Consensus 58 ~l~~iv~l~~~~~~~~~l~e~i~~---Lskkr~qlk~ai~~~V~~~~~~l~~-~~~~d~~--~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 58 VLAKIVDLLASRNKWDDLNEQLTL---LSKKHGQLKLSIQYMIQKVMEYLKS-SKSLDLN--TRISVIETIRVVTENKIF 131 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHH---HHTTTTTSHHHHHHHHHHHHHHHHH-HCTTHHH--HHHHHHHCCSSSSSCCCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHhc-CCchhHH--HHHHHHHHHHHHhccchH
Confidence 355667777888888877665532 2333333222223333333333322 2222211 11122222222 1
Q ss_pred --hhHHHHHHHHHHHHHHhCChHH-HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 315 --SMQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 315 --~g~A~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
...|..-..||.+|...|++.+ +.---++..+.+.. .+...+...+.....+++..+++..|...++++....
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~----~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS----MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS----SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 1267778899999999999886 22222223334332 2455678888999999999999999999999998766
Q ss_pred HHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 392 HNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 392 r~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
.....++...+......|.++.+.+++.+|..+|.+++......+|...
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~ 256 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAK 256 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHH
Confidence 5566778889999999999999999999999999999999888888653
No 209
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.54 E-value=0.032 Score=52.40 Aligned_cols=107 Identities=13% Similarity=0.008 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN--HMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~--elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD 437 (553)
---+++.-....+..|-|+.|.....-++.+... +...+...++++..+|+++...|++.+|...|++||.+.+.+..
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3345666677778899999999999999999852 23357899999999999999999999999999999999886532
Q ss_pred -------------------hHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 008796 438 -------------------IPTQIWALSVLTALYQQLGDRGNEMENDE 466 (553)
Q Consensus 438 -------------------~~~qa~aL~~Lg~ly~alGd~~~A~e~~e 466 (553)
...+.....-++..|.+.|++..|...++
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 23355677889999999999999987654
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.48 E-value=0.18 Score=51.45 Aligned_cols=136 Identities=11% Similarity=0.033 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHH-HHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHH---HcCC------HHHHHHHH
Q 008796 315 SMQAMCHAYAAVS-YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLM---RQQD------FQEARNRL 384 (553)
Q Consensus 315 ~g~A~aL~NLA~v-yl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~---~qGr------~~EA~~~L 384 (553)
...+.+..+-+++ -+..|+...+..+|.-..+. ++ ++..|..++..-. ..|. ..+|+..+
T Consensus 117 ~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------dv--e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~l 186 (301)
T 3u64_A 117 ALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRV--------DV--GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMML 186 (301)
T ss_dssp HHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGG--------GH--HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCccHHHHHHhcchhhHHHHHHHcCcc--------cc--HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHH
Confidence 4455666656666 56667766688887766654 22 4444444444332 1232 46788888
Q ss_pred HHHHHHHHHhccChHhHHHHHHHHHHHHHHC-----CChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-cCCc
Q 008796 385 AKGLQIAHNHMGNLQLVSQYLTILGNLALAL-----HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQ-LGDR 458 (553)
Q Consensus 385 ~eAL~Lar~elGdr~leA~aL~~LG~i~lal-----Gd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~a-lGd~ 458 (553)
++|+++- .....+.++..||.+|... |+.+.|+.++++||++.-.- -..+....|+.+.. .|++
T Consensus 187 erAleLD-----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-----~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 187 ERACDLW-----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-----DPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHC-----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-----CSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHhC-----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHHhcCCH
Confidence 8888774 2366788999999999996 99999999999999996311 13466778887777 5999
Q ss_pred hHHHHHHHHHHH
Q 008796 459 GNEMENDEYRRK 470 (553)
Q Consensus 459 ~~A~e~~e~a~~ 470 (553)
+.|..+++.+..
T Consensus 257 ~~a~~~L~kAL~ 268 (301)
T 3u64_A 257 AGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999998888765
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.26 E-value=0.01 Score=49.60 Aligned_cols=68 Identities=16% Similarity=0.052 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQD---FQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr---~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArk 434 (553)
-+..+..+|.+++..++ .++|..++++||++- .....++..||.++...|++.+|.++|++.+.....
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35788899999987777 799999999999984 334568899999999999999999999999876544
No 212
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.20 E-value=0.52 Score=48.49 Aligned_cols=186 Identities=13% Similarity=0.014 Sum_probs=106.9
Q ss_pred HHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHcc
Q 008796 238 LMQFLENKVAV---ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC--YSEAAFHYVEAAKITE 312 (553)
Q Consensus 238 ~a~lLenLg~~---~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~--yeeAl~~f~~AL~l~~ 312 (553)
+-.+|..++.- .-....+.++++.+..++.. +|. -..+.+..|.+...++. +++++..+.+++..-.
T Consensus 70 Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~---~PK-----ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp 141 (331)
T 3dss_A 70 RREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPK-----SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE 141 (331)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh---CCC-----CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC
Confidence 55666666531 01112256666666666543 555 24588888899888984 9999999999987532
Q ss_pred chhhHHHHHHHHHHHHHHhCCh-HH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHc-------------
Q 008796 313 SKSMQAMCHAYAAVSYFCIGDA-ES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ------------- 374 (553)
Q Consensus 313 d~~g~A~aL~NLA~vyl~~Gd~-e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~q------------- 374 (553)
.-..|.++-+++....|.+ ++ +.++++. .+- -..+++..|.+....
T Consensus 142 ---rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~p~------------N~SAW~~R~~ll~~l~~~~~~~~~~~~~ 205 (331)
T 3dss_A 142 ---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFS------------NYSSWHYRSCLLPQLHPQPDSGPQGRLP 205 (331)
T ss_dssp ---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CSC------------CHHHHHHHHHHHHHHSCCC------CCC
T ss_pred ---CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-CCC------------CHHHHHHHHHHHHHhhhccccccccccc
Confidence 2234556666777777874 33 4444432 111 246788888888777
Q ss_pred -CCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHC-CCh---HHHHHHHHHHHHHHHHhCC-hHHHHHHHHHH
Q 008796 375 -QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-HDT---VQAREILRSSLTLAKKLYD-IPTQIWALSVL 448 (553)
Q Consensus 375 -Gr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lal-Gd~---~eA~~~l~~AL~LArklgD-~~~qa~aL~~L 448 (553)
+.++++.+++.+++.+. -+|. .+.+.+..+.... |.. ..=.+++++++...+++-+ -+.-.|++..+
T Consensus 206 ~~~~~eEle~~~~ai~~~---P~d~----SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 206 ENVLLKELELVQNAFFTD---PNDQ----SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp HHHHHHHHHHHHHHHHHS---TTCH----HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 56899999999999884 3442 2333333333333 321 1112444444444444311 11126777666
Q ss_pred HHHHHH
Q 008796 449 TALYQQ 454 (553)
Q Consensus 449 g~ly~a 454 (553)
..+...
T Consensus 279 ~~~~~~ 284 (331)
T 3dss_A 279 ILLMRA 284 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655443
No 213
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.19 E-value=0.31 Score=49.43 Aligned_cols=184 Identities=8% Similarity=-0.060 Sum_probs=126.2
Q ss_pred HHHHHHHHhhCCH-HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHccchhhHHH
Q 008796 243 ENKVAVELTRSGF-VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG--CYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 243 enLg~~~l~~Gr~-aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG--~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
.+........|++ .+|++.+..++.+ .|+- .++.+..|.+...+| ++++++..+..++...-+. ..
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~---nP~~-----~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~---y~ 104 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINE---LASH-----YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN---YQ 104 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC---CH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH---CcHH-----HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc---HH
Confidence 3444445566777 5899999999877 5662 558899999999999 9999999999998765332 22
Q ss_pred HHHHHHHHH----HHh---CChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHH--HHHHHHHH
Q 008796 320 CHAYAAVSY----FCI---GDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQ--EARNRLAK 386 (553)
Q Consensus 320 aL~NLA~vy----l~~---Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~--EA~~~L~e 386 (553)
+.++-+.+. ... +++++ +.+++++--. =..+++..|.+....|+++ +++.++.+
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-------------NHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-------------CHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 333334444 333 45443 4555443111 2478999999999999999 99999999
Q ss_pred HHHHHHHhccChHhHHHHHHHHHHHHHHCCC------hHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchH
Q 008796 387 GLQIAHNHMGNLQLVSQYLTILGNLALALHD------TVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGN 460 (553)
Q Consensus 387 AL~Lar~elGdr~leA~aL~~LG~i~lalGd------~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~ 460 (553)
++++- ..| -.+.+.-|.+....|+ +.++.+++.+++.+ .-...- +-+.++-++...|+...
T Consensus 172 ~i~~d---~~N----~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~----~p~n~S--aW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 172 VIDTD---LKN----NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK----CPQNPS--TWNYLLGIHERFDRSIT 238 (306)
T ss_dssp HHHHC---TTC----HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH----CSSCHH--HHHHHHHHHHHTTCCGG
T ss_pred HHHhC---CCC----HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh----CCCCcc--HHHHHHHHHHhcCCChH
Confidence 99872 444 2467777888888876 67777777777654 222222 34567778888888665
Q ss_pred HHH
Q 008796 461 EME 463 (553)
Q Consensus 461 A~e 463 (553)
+..
T Consensus 239 ~~~ 241 (306)
T 3dra_A 239 QLE 241 (306)
T ss_dssp GGH
T ss_pred HHH
Confidence 443
No 214
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.92 E-value=0.55 Score=52.83 Aligned_cols=194 Identities=10% Similarity=0.038 Sum_probs=121.3
Q ss_pred HHhhCCHHHHH-HHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc---------hh---
Q 008796 249 ELTRSGFVEAQ-EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITES---------KS--- 315 (553)
Q Consensus 249 ~l~~Gr~aeAl-~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d---------~~--- 315 (553)
....|+.++|. +.+++|+.. .|.- ..+......+....|++++|...|.+++..... +.
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~---~P~s-----~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC---IPNS-----AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 34568888997 999999864 4652 235556777788899999999999999985310 10
Q ss_pred -------hHHHHHHHHHHHHHHhCChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcC-CHHHHHHH
Q 008796 316 -------MQAMCHAYAAVSYFCIGDAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-DFQEARNR 383 (553)
Q Consensus 316 -------g~A~aL~NLA~vyl~~Gd~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qG-r~~EA~~~ 383 (553)
..+.+....+....+.|+.+. +.+|+....+. . ...+...+.+-...| +++.|+..
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-------~-----~~lyi~~A~lE~~~~~d~e~Ar~i 492 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-------T-----PDIYLENAYIEYHISKDTKTACKV 492 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-------C-----THHHHHHHHHHHTTTSCCHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-------C-----hHHHHHHHHHHHHhCCCHHHHHHH
Confidence 122233334444455565554 44444331111 1 123334455555554 59999999
Q ss_pred HHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHH
Q 008796 384 LAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEME 463 (553)
Q Consensus 384 L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e 463 (553)
|+++|+.+- ...+ .....+......|+...|+..+++|+.... +...-........+.-...|+.+.+..
T Consensus 493 fe~~Lk~~p-~~~~------~w~~y~~fe~~~~~~~~AR~lferal~~~~---~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 493 LELGLKYFA-TDGE------YINKYLDFLIYVNEESQVKSLFESSIDKIS---DSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp HHHHHHHHT-TCHH------HHHHHHHHHHHHTCHHHHHHHHHHHTTTSS---STTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHCC-CchH------HHHHHHHHHHhCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999862 2222 234556667778999999999999987543 211122233445566678899988877
Q ss_pred HHHHHHHHH
Q 008796 464 NDEYRRKKL 472 (553)
Q Consensus 464 ~~e~a~~~~ 472 (553)
...+.....
T Consensus 563 v~~R~~~~~ 571 (679)
T 4e6h_A 563 LEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 776665443
No 215
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.87 E-value=0.32 Score=53.24 Aligned_cols=137 Identities=7% Similarity=-0.079 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhC
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG--CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIG 332 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG--~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~G 332 (553)
+.+|++.+.++++ ..|. -..+.+..|.+...++ ++++|++.+.+++++-.. -..|.++-+++....|
T Consensus 89 ~~~eL~~~~~~l~---~~pK-----~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~---N~~aW~~R~~~l~~l~ 157 (567)
T 1dce_A 89 VKAELGFLESCLR---VNPK-----SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAA 157 (567)
T ss_dssp HHHHHHHHHHHHH---HCTT-----CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH---hCCC-----CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc---cccHHHHHHHHHHHcC
Confidence 8999999998875 4566 2458888999999999 779999999999986432 2566777788888888
Q ss_pred -ChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhccC
Q 008796 333 -DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQ--------------QDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 333 -d~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~q--------------Gr~~EA~~~L~eAL~Lar~elGd 397 (553)
.+++ +++-+....... .. -..+|+..|.+.... +.+++|.+++.+|+.+. -.|
T Consensus 158 ~~~~~---el~~~~~~I~~~---p~---n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~---P~~ 225 (567)
T 1dce_A 158 VAPAE---ELAFTDSLITRN---FS---NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---PND 225 (567)
T ss_dssp CCHHH---HHHHHHTTTTTT---CC---CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC---SSC
T ss_pred CChHH---HHHHHHHHHHHC---CC---CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC---CCC
Confidence 5443 333333221111 01 357889999988875 56899999999999874 223
Q ss_pred hHhHHHHHHHHHHHHHHCCCh
Q 008796 398 LQLVSQYLTILGNLALALHDT 418 (553)
Q Consensus 398 r~leA~aL~~LG~i~lalGd~ 418 (553)
..+.+.++.++...|++
T Consensus 226 ----~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 226 ----QSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp ----SHHHHHHHHHHSCCCCC
T ss_pred ----ccHHHHHHHHHhcCCCc
Confidence 24677788888776653
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.71 E-value=0.13 Score=52.60 Aligned_cols=69 Identities=7% Similarity=0.058 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQ-----QDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL-HDTVQAREILRSSLTLAK 433 (553)
Q Consensus 360 eA~aL~~LG~~~~~q-----Gr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lal-Gd~~eA~~~l~~AL~LAr 433 (553)
...++..+|.+|... |+.++|+.+|++||+|. ..|+ ..+.+..|+.+... ||+.+|..++++|++.--
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~----id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHD----PDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTC----SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCC----chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 567899999999995 99999999999999995 2232 34678899988884 999999999999998643
Q ss_pred H
Q 008796 434 K 434 (553)
Q Consensus 434 k 434 (553)
.
T Consensus 272 ~ 272 (301)
T 3u64_A 272 E 272 (301)
T ss_dssp G
T ss_pred C
Confidence 3
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.68 E-value=0.056 Score=50.00 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCC
Q 008796 297 YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD 376 (553)
Q Consensus 297 yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr 376 (553)
...+...|.+++.. +. .-..+..++|+++.+...+....++..++..+.+.. .......++|++|..+++.|+
T Consensus 14 l~~~~~~y~~e~~~-~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-GS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHT-TC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcc-CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccC
Confidence 34556666666542 11 345777888999988877777888888888775431 122367899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 008796 377 FQEARNRLAKGLQI 390 (553)
Q Consensus 377 ~~EA~~~L~eAL~L 390 (553)
|++|++++.++|++
T Consensus 87 Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 87 YEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999998
No 218
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.43 E-value=0.16 Score=55.71 Aligned_cols=176 Identities=7% Similarity=-0.080 Sum_probs=123.1
Q ss_pred HHHHHhhCCH-HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHccch
Q 008796 246 VAVELTRSGF-VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC----------YSEAAFHYVEAAKITESK 314 (553)
Q Consensus 246 g~~~l~~Gr~-aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~----------yeeAl~~f~~AL~l~~d~ 314 (553)
.......|++ ++|++.+.+++++ .|+- .++.+..|.+...+|+ +++|++.+..+++..-.
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~---nP~~-----~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK- 105 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGA---NPDF-----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK- 105 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH---Cchh-----HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-
Confidence 3344455665 4668888888776 5662 4588889999999988 99999999999875432
Q ss_pred hhHHHHHHHHHHHHHHhCCh--HH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 008796 315 SMQAMCHAYAAVSYFCIGDA--ES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQ-DFQEARNRLAKG 387 (553)
Q Consensus 315 ~g~A~aL~NLA~vyl~~Gd~--e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qG-r~~EA~~~L~eA 387 (553)
-..+..+-+++....|++ ++ +.+++++--. -..||+..|.+....| .+++|.+++.++
T Consensus 106 --~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-------------N~~aW~~R~~~l~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 106 --SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-------------NFHCWDYRRFVAAQAAVAPAEELAFTDSL 170 (567)
T ss_dssp --CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-------------cccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 345667778888888843 43 5666554211 2578999999999999 899999999999
Q ss_pred HHHHHHhccChHhHHHHHHHHHHHHHHC--------------CChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 008796 388 LQIAHNHMGNLQLVSQYLTILGNLALAL--------------HDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 453 (553)
Q Consensus 388 L~Lar~elGdr~leA~aL~~LG~i~lal--------------Gd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~ 453 (553)
+++. ..| ..+.+..|.+.... +.+++|.+++.+|+.+. + .... +...++-++.
T Consensus 171 I~~~---p~n----~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~---P-~~~s--aW~y~~~ll~ 237 (567)
T 1dce_A 171 ITRN---FSN----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---P-NDQS--AWFYHRWLLG 237 (567)
T ss_dssp TTTT---CCC----HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC---S-SCSH--HHHHHHHHHS
T ss_pred HHHC---CCC----ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC---C-CCcc--HHHHHHHHHh
Confidence 8762 444 35778888888775 44677888888887652 1 1122 3344566666
Q ss_pred HcCCc
Q 008796 454 QLGDR 458 (553)
Q Consensus 454 alGd~ 458 (553)
..|++
T Consensus 238 ~~~~~ 242 (567)
T 1dce_A 238 RAEPH 242 (567)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 65553
No 219
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.40 E-value=2.1 Score=48.02 Aligned_cols=171 Identities=6% Similarity=0.017 Sum_probs=109.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHH--------HCCch------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFI--------RFPTI------LQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 309 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r--------~~~dl------~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~ 309 (553)
..+......|++++|.+.|++++.... ..|.- .....+.+......+....|..+.|...|..|++
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555678999999999999998752 23420 0011233555556677778899999999999987
Q ss_pred HccchhhHHHHHHHHHHHHHHhC-ChHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008796 310 ITESKSMQAMCHAYAAVSYFCIG-DAES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRL 384 (553)
Q Consensus 310 l~~d~~g~A~aL~NLA~vyl~~G-d~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L 384 (553)
.........+ ...|.+....| +++. ++.+|..+... ...+...+......|+.+.|+..|
T Consensus 463 ~~~~~~~~ly--i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~-------------~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 463 LKKLVTPDIY--LENAYIEYHISKDTKTACKVLELGLKYFATD-------------GEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp TGGGSCTHHH--HHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCCChHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc-------------hHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6322222222 24455554544 3554 77777764432 123455566667789999999999
Q ss_pred HHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH
Q 008796 385 AKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAK 433 (553)
Q Consensus 385 ~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LAr 433 (553)
++|++... +.................-|+...+....++++...-
T Consensus 528 eral~~~~----~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 528 ESSIDKIS----DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHTTTSS----STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHhcC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99987642 1112224555566667777888888888887776643
No 220
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.81 E-value=0.23 Score=46.64 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-------------------ChHhHHHHHHHHHHHHHHCC
Q 008796 356 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-------------------NLQLVSQYLTILGNLALALH 416 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG-------------------dr~leA~aL~~LG~i~lalG 416 (553)
....++.++..+|.+++.+|+|..|...|++||.+.+ -+- +..-+...-+.++..|..+|
T Consensus 58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k-~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~ 136 (167)
T 3ffl_A 58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK-ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLK 136 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-CC--------------------CCCCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH-HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHC
Confidence 4455899999999999999999999999999999974 221 12234578899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 008796 417 DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQ 453 (553)
Q Consensus 417 d~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~ 453 (553)
++++|+.+++ .|+....-..+.-.||++|+
T Consensus 137 ~~~~Ai~~Le-------~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 137 QDKDAIAILD-------GIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp CHHHHHHHHH-------TSCGGGCCHHHHHHHHHHCC
T ss_pred CHHHHHHHHh-------cCCchhcCHHHHHHHHHHhc
Confidence 9888777654 34433333344556666653
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.74 E-value=0.11 Score=43.20 Aligned_cols=78 Identities=13% Similarity=-0.088 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 241 FLENKVAVELTRSG---FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 241 lLenLg~~~l~~Gr---~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
++..+|.+....++ .++|.+.+.+|+++ .|+ ...+...+|..+...|+|++|..++++.++...+....
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~-----~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPY-----NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 45667777777766 79999999999986 455 35588999999999999999999999998866553344
Q ss_pred HHHHHHHHH
Q 008796 318 AMCHAYAAV 326 (553)
Q Consensus 318 A~aL~NLA~ 326 (553)
......+..
T Consensus 80 ~~i~~~I~~ 88 (93)
T 3bee_A 80 VTIIESINK 88 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.05 E-value=2 Score=46.96 Aligned_cols=177 Identities=10% Similarity=-0.006 Sum_probs=99.1
Q ss_pred hcCCCHHHHHH-HH-----HHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Q 008796 186 RPKGLFKECMQ-RI-----QSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQ 259 (553)
Q Consensus 186 ~~~G~~dka~k-y~-----ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl 259 (553)
...|+|++|.+ ++ ..-+..+-..+++.|..+.+-+.--++ ..-....+..|++++|.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-----------------~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQ-----------------DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCCH-----------------HHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCCc-----------------chheehhhhcCCHHHHH
Confidence 46788988877 65 555555555555544432200000000 01112234555655554
Q ss_pred HHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHH
Q 008796 260 EALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQ 339 (553)
Q Consensus 260 ~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~q 339 (553)
+ +++...+ ......+|.++...|+++.|+..|. ..++.. .+..+|...|+.+.+.+
T Consensus 673 ~-------~~~~~~~------~~~W~~la~~al~~~~~~~A~~~y~----~~~d~~-------~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 673 D-------LLTDESA------EMKWRALGDASLQRFNFKLAIEAFT----NAHDLE-------SLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp H-------HHTTCCC------HHHHHHHHHHHHHTTCHHHHHHHHH----HHTCHH-------HHHHHHHHTTCHHHHHH
T ss_pred H-------HHHhhCc------HhHHHHHHHHHHHcCCHHHHHHHHH----HccChh-------hhHHHHHHcCCHHHHHH
Confidence 4 4555554 3578899999999999999999999 444433 34455666788777555
Q ss_pred HHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHHHHhccChH-hHHHHHHHHHHHH
Q 008796 340 AIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLA------KGLQIAHNHMGNLQ-LVSQYLTILGNLA 412 (553)
Q Consensus 340 AL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~------eAL~Lar~elGdr~-leA~aL~~LG~i~ 412 (553)
...+....+ . . ..-..++...|++++|.+.|. +|+.+++ ..+... .....+...+.-.
T Consensus 729 ~~~~a~~~~-------~-~------~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~-~~~~~~~~i~~~~~~~~~~L 793 (814)
T 3mkq_A 729 LAKDAETTG-------K-F------NLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGS-TYGLGDNEVNDIVTKWKENL 793 (814)
T ss_dssp HHHHHHHTT-------C-H------HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHH-HTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-------c-h------HHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHH-HhCCChHHHHHHHHHHHHHH
Confidence 555444431 1 1 111234666899999988774 4666664 444422 1344444444444
Q ss_pred HHCCCh
Q 008796 413 LALHDT 418 (553)
Q Consensus 413 lalGd~ 418 (553)
...|+.
T Consensus 794 ~~~~~~ 799 (814)
T 3mkq_A 794 ILNGKN 799 (814)
T ss_dssp HTTTCH
T ss_pred Hhccch
Confidence 455543
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.35 E-value=2.7 Score=45.17 Aligned_cols=163 Identities=9% Similarity=-0.084 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHcc
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSV---------GCYSEAAFHYVEAAKITE 312 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~al---------G~yeeAl~~f~~AL~l~~ 312 (553)
+.++...+...|++++|++.|.+|.+- .--||.. .++.+=..+... +.+++|...|.+-... +
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~------tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-G 100 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQY------HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-K 100 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHH------HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHh------HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-C
Confidence 455566778999999999999999763 1236631 222222222222 2367777777643321 1
Q ss_pred chhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 313 SKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 313 d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
..--..+.+.+-..|...|+.++..+.++-....|-.+ -..+++.+=..+.+.|+.++|.+.+.+-.+
T Consensus 101 -~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P--------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~--- 168 (501)
T 4g26_A 101 -VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP--------RLRSYGPALFGFCRKGDADKAYEVDAHMVE--- 168 (501)
T ss_dssp -CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------ccceehHHHHHHHHCCCHHHHHHHHHHHHh---
Confidence 11123456677777888888765333333333332111 245667777778888999999888887532
Q ss_pred HhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHH
Q 008796 393 NHMGNLQLVSQYLTILGNLALALHDTVQAREILRS 427 (553)
Q Consensus 393 ~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~ 427 (553)
.|- ..-..+++.|=..+...|+.++|.+++++
T Consensus 169 --~G~-~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 169 --SEV-VPEEPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp --TTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --cCC-CCCHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 333 22345677888888899998888888665
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=93.30 E-value=5.5 Score=42.73 Aligned_cols=161 Identities=12% Similarity=-0.026 Sum_probs=100.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------C
Q 008796 183 ILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTR---------S 253 (553)
Q Consensus 183 ~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~---------G 253 (553)
...-..|++++|.+.++... +.|+.+. . .+| +.|..++... +
T Consensus 34 d~c~k~G~~~~A~~lf~~M~--------~~Gv~pd--------~-----~ty--------n~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEAR--------RNGVQLS--------Q-----YHY--------NVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHH--------HHTCCCC--------H-----HHH--------HHHHHHHTTCCCCSSSSCCH
T ss_pred HHHHhCCCHHHHHHHHHHHH--------HcCCCCC--------H-----hHH--------HHHHHHHHhCCchhhhhhcc
Confidence 34456899999888777643 3477666 1 233 1222233322 3
Q ss_pred CHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCC
Q 008796 254 GFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGD 333 (553)
Q Consensus 254 r~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd 333 (553)
..++|.+.+.++.+- .-.||. ..++.+=..+...|++++|...|.+-.+. + ..--..+.+.+-..|...|+
T Consensus 85 ~l~~A~~lf~~M~~~-G~~Pd~------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g-~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 85 GLSRGFDIFKQMIVD-KVVPNE------ATFTNGARLAVAKDDPEMAFDMVKQMKAF-G-IQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHHHHHT-TCCCCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T-CCCCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHh-CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCccceehHHHHHHHHCCC
Confidence 356777777766532 113562 35566666777899999999999865432 1 11134456666677888898
Q ss_pred hHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 334 AESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 334 ~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
.++..+.++.+...|-.+ -..+++.+=.++.+.|+.++|.+.|++--+
T Consensus 156 ~~~A~~l~~~M~~~G~~P--------d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVP--------EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHHHTTCCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 776444444433332222 346788888899999999999999988543
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.98 E-value=9.2 Score=41.64 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=54.8
Q ss_pred HhhCCHHHHHH-HHHHHHHHHHHCC-chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQE-ALVQMKNWFIRFP-TILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVS 327 (553)
Q Consensus 250 l~~Gr~aeAl~-~l~qAL~L~r~~~-dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~v 327 (553)
+..+++++|.+ .+ ...+ .. ....+-.+....|.+++|.... ++.... -..
T Consensus 610 ~~~~~~~~a~~~~l-------~~i~~~~-------~~~~~~~~l~~~~~~~~a~~~~-------~~~~~~-------f~~ 661 (814)
T 3mkq_A 610 TLRGEIEEAIENVL-------PNVEGKD-------SLTKIARFLEGQEYYEEALNIS-------PDQDQK-------FEL 661 (814)
T ss_dssp HHTTCHHHHHHHTG-------GGCCCHH-------HHHHHHHHHHHTTCHHHHHHHC-------CCHHHH-------HHH
T ss_pred HHhCCHHHHHHHHH-------hcCCchH-------HHHHHHHHHHhCCChHHheecC-------CCcchh-------eeh
Confidence 56788888865 33 1122 10 0133334556667766665433 332111 112
Q ss_pred HHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008796 328 YFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKG 387 (553)
Q Consensus 328 yl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eA 387 (553)
.+..|+.+ .|+++.+.+. .-..|..+|..+...|+++.|.++|.++
T Consensus 662 ~l~~~~~~---~A~~~~~~~~-----------~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLT---LARDLLTDES-----------AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHH---HHHHHHTTCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHH---HHHHHHHhhC-----------cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34456644 5666666552 1257788888888889999888888875
No 226
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=92.95 E-value=1.7 Score=44.57 Aligned_cols=160 Identities=6% Similarity=-0.087 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHH
Q 008796 241 FLENKVAVELTRSGFV-EAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGC----------YSEAAFHYVEAAK 309 (553)
Q Consensus 241 lLenLg~~~l~~Gr~a-eAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~----------yeeAl~~f~~AL~ 309 (553)
-+.+.+......|+++ +|++.+..++.+ .|+- .++.+..|.+...++. +++++..+..++.
T Consensus 31 ~~~~~~~~~~~~~e~s~eaL~~t~~~L~~---nP~~-----ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 31 SATQAVFQKRQAGELDESVLELTSQILGA---NPDF-----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 102 (331)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHTT---CTTC-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH---Cchh-----HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 3444455556678887 788888888766 5662 3466666666666655 6788888887776
Q ss_pred HccchhhHHHHHHHHHHHHHHhCC--hHH----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCC-HHHHHH
Q 008796 310 ITESKSMQAMCHAYAAVSYFCIGD--AES----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD-FQEARN 382 (553)
Q Consensus 310 l~~d~~g~A~aL~NLA~vyl~~Gd--~e~----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr-~~EA~~ 382 (553)
... --..+.++-+++....|+ +++ +.+++++--. =..+|+.-|.+....|+ ++++++
T Consensus 103 ~~P---Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-------------Ny~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 103 VNP---KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-------------NFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HCT---TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCC---CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-------------CHHHHHHHHHHHHHhCcCHHHHHH
Confidence 432 223455666677777775 332 5555543111 24789999999999999 699999
Q ss_pred HHHHHHHHHHHhccChHhHHHHHHHHHHHHHHC--------------CChHHHHHHHHHHHHH
Q 008796 383 RLAKGLQIAHNHMGNLQLVSQYLTILGNLALAL--------------HDTVQAREILRSSLTL 431 (553)
Q Consensus 383 ~L~eAL~Lar~elGdr~leA~aL~~LG~i~lal--------------Gd~~eA~~~l~~AL~L 431 (553)
++.+++++ ...| ..+.+..|.+.... +.+.++.+++.+|+.+
T Consensus 167 ~~~~~I~~---~p~N----~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 167 FTDSLITR---NFSN----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHHHHH---CSCC----HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---CCCC----HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 99999987 2555 24566777776665 3356677777777654
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=92.57 E-value=0.45 Score=43.86 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQ---DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTL 431 (553)
Q Consensus 360 eA~aL~~LG~~~~~qG---r~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~L 431 (553)
-..+.|++|+++.+.. +.+++...|++.++.. ++.....++++||-.+...|++.+|+++++.+|++
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3578899999999988 6679999999988753 22234568999999999999999999999999977
No 228
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=92.48 E-value=2 Score=44.51 Aligned_cols=153 Identities=11% Similarity=-0.078 Sum_probs=104.7
Q ss_pred hCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH
Q 008796 252 RSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVG-CYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFC 330 (553)
Q Consensus 252 ~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG-~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~ 330 (553)
.....+|++.+.+++.+ .|+- .++.+..|.+...+| .+++++..+..++...-+ -..+.++-+++...
T Consensus 67 ~e~se~AL~lt~~~L~~---nP~~-----ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM---NPAH-----YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHHRLLLLDR 135 (349)
T ss_dssp TCCSHHHHHHHHHHHHH---CTTC-----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh---Cchh-----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHH
Confidence 34446899999988877 5552 458888999999999 599999999998865432 23445555666666
Q ss_pred h-C-ChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHhccChHh
Q 008796 331 I-G-DAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQ--------EARNRLAKGLQIAHNHMGNLQL 400 (553)
Q Consensus 331 ~-G-d~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~--------EA~~~L~eAL~Lar~elGdr~l 400 (553)
. | +++ ++|+.+....... .. =..+++..+.+....|+++ ++++++.+++++- ..|
T Consensus 136 l~~~~~~---~EL~~~~k~L~~d----pk--Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N--- 200 (349)
T 3q7a_A 136 ISPQDPV---SEIEYIHGSLLPD----PK--NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRN--- 200 (349)
T ss_dssp HCCSCCH---HHHHHHHHHTSSC----TT--CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTC---
T ss_pred hcCCChH---HHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCC---
Confidence 5 5 554 3334333332111 10 2478899999999988888 9999999998872 444
Q ss_pred HHHHHHHHHHHHHHCCC-------hHHHHHHHHHHHHH
Q 008796 401 VSQYLTILGNLALALHD-------TVQAREILRSSLTL 431 (553)
Q Consensus 401 eA~aL~~LG~i~lalGd-------~~eA~~~l~~AL~L 431 (553)
-.+.+..|.+....|+ ..++.+++.+++.+
T Consensus 201 -~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 201 -NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp -HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 3477888888888886 45566666666543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.44 E-value=0.93 Score=40.55 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCC
Q 008796 297 YSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQD 376 (553)
Q Consensus 297 yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr 376 (553)
...+...|..++.. +. .-..+..++|+++.+...+....+++.++.++.+.. ..-..=.+++.+|..+++.|+
T Consensus 17 l~~~~~~y~~e~~~-~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHH-SC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcc-CC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhh
Confidence 34455556655432 12 334667788888888777777888998888876542 122355789999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 008796 377 FQEARNRLAKGLQI 390 (553)
Q Consensus 377 ~~EA~~~L~eAL~L 390 (553)
|++|++++...|++
T Consensus 90 Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 90 YEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999998
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.06 E-value=3.2 Score=39.16 Aligned_cols=100 Identities=17% Similarity=0.062 Sum_probs=67.3
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH
Q 008796 249 ELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSY 328 (553)
Q Consensus 249 ~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vy 328 (553)
.+..|+++.|.+..+ ...+ ......||..+...|+++-|...|. ..+|. ..+..+|
T Consensus 15 AL~lg~l~~A~e~a~-------~l~~------~~~Wk~Lg~~AL~~gn~~lAe~cy~----~~~D~-------~~L~~Ly 70 (177)
T 3mkq_B 15 ALEYGNLDAALDEAK-------KLND------SITWERLIQEALAQGNASLAEMIYQ----TQHSF-------DKLSFLY 70 (177)
T ss_dssp HHHTTCHHHHHHHHH-------HHCC------HHHHHHHHHHHHHTTCHHHHHHHHH----HTTCH-------HHHHHHH
T ss_pred HHhcCCHHHHHHHHH-------HhCC------HHHHHHHHHHHHHcCChHHHHHHHH----HhCCH-------HHHHHHH
Confidence 366777777766543 3333 4478899999999999999999999 55553 3455677
Q ss_pred HHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008796 329 FCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAK 386 (553)
Q Consensus 329 l~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~e 386 (553)
...|+.+.+..-..+....+ . ++.-..+++.+|+++++.+.|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g-------~-------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE-------D-------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT-------C-------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc-------c-------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 78888877554444333321 1 13345567788999888877643
No 231
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.85 E-value=0.7 Score=48.75 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
.+.++..+|..+...|++++|.+.|.++...+. ..+. . ......+-.+++..+|+..+...+.+|-.+..+.+|..
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-~~~~--k-id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-STGA--K-IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-CCCS--H-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-ChHH--H-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHH
Confidence 455778899999999999999999999998873 3443 2 23445555678889999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 008796 440 TQIWALSVLTALYQQLGDRGNEMENDEYR 468 (553)
Q Consensus 440 ~qa~aL~~Lg~ly~alGd~~~A~e~~e~a 468 (553)
.+......-|.++...+++..|...|-..
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 77777777788889999999998877553
No 232
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.59 E-value=5.2 Score=42.03 Aligned_cols=123 Identities=14% Similarity=0.050 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHH--CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHH
Q 008796 259 QEALVQMKNWFIR--FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAES 336 (553)
Q Consensus 259 l~~l~qAL~L~r~--~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~ 336 (553)
++.+.+.++.+.. .++. -...++..+|.++...|++++|...|.+...-.....-...+..++..+++..|++..
T Consensus 110 l~~l~~~~~~~~~~~~~e~---e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~ 186 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGEL---EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLY 186 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCC---CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhhccccH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHH
Confidence 4556666666655 3442 1234678899999999999999999999888776666666677777788888899887
Q ss_pred ----HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 337 ----SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 337 ----~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
+.+|..++...++. .-++......|.++...++|.+|-.+|.+++.-.
T Consensus 187 ~~~~~~ka~~~~~~~~d~-------~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 187 VKEKLEAVNSMIEKGGDW-------ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHHTTCCCT-------HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhcCCCH-------HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 66776666655322 2244555667889999999999999999988765
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.24 E-value=3.5 Score=42.78 Aligned_cols=108 Identities=12% Similarity=-0.003 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc-----ChH----------hHHHHHHHHHHHHHHCCChHHHHHHHHHH
Q 008796 364 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG-----NLQ----------LVSQYLTILGNLALALHDTVQAREILRSS 428 (553)
Q Consensus 364 L~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG-----dr~----------leA~aL~~LG~i~lalGd~~eA~~~l~~A 428 (553)
+..-|......|++++|.+.+++||.+++.... ... .--.++..+.+.++..|++.+|...++..
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444455678999999999999999742211 111 11245667889999999999999988887
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH-HHHhh
Q 008796 429 LTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRRKKL-DELQK 477 (553)
Q Consensus 429 L~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~-d~L~~ 477 (553)
+.. |+..+. ....|=.++...|+..+|.+.|+...+.. ++++-
T Consensus 198 ~~~-----~P~~E~-~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~ 241 (388)
T 2ff4_A 198 TFE-----HPYREP-LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 241 (388)
T ss_dssp HHH-----STTCHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHh-----CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 654 233332 45566678899999999999998887754 44553
No 234
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.74 E-value=13 Score=40.65 Aligned_cols=204 Identities=16% Similarity=0.080 Sum_probs=91.0
Q ss_pred HhhCCHHHHHHHHHHHH--HHHHHCCc-hhhhhHHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHHc---cc
Q 008796 250 LTRSGFVEAQEALVQMK--NWFIRFPT-ILQACESMIEMLRGQYAHSVGCYSEA----------AFHYVEAAKIT---ES 313 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL--~L~r~~~d-l~~~~~A~~~~lLG~~~~alG~yeeA----------l~~f~~AL~l~---~d 313 (553)
+...+|++|.++-...+ +....+.. .+-...|.++.-.+..+...|...+. ...+..+++.+ .|
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 45788888888877665 23332211 11123455555555555555555442 23445555544 45
Q ss_pred hhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008796 314 KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHN 393 (553)
Q Consensus 314 ~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~ 393 (553)
..++|..++.+=..|+..+.+++.. .++...- -+.+..+-...+.-++-+|.++..+++|.+|.++|..|+..+..
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~---~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSAS---DFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHH---HHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cchhHHHHHHHHHHHHccCcHHHHH---HHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 6789999999999999988877633 3322221 11111122345888899999999999999999999999987532
Q ss_pred hc-cC-hHhHHHHHHHHHHHHHHCCCh-----------HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchH
Q 008796 394 HM-GN-LQLVSQYLTILGNLALALHDT-----------VQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGN 460 (553)
Q Consensus 394 el-Gd-r~leA~aL~~LG~i~lalGd~-----------~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~ 460 (553)
.. .. ....+.-+..+-.+. +|+. ..+..-|. .|.-|=+.||...-..++..-...+...|.+.-
T Consensus 303 ~~~a~gfr~~a~K~lI~V~LL--lG~iP~r~lf~q~~l~~~L~pY~-~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~L 379 (523)
T 4b4t_S 303 NSKSLGFLQQSNKLHCCIQLL--MGDIPELSFFHQSNMQKSLLPYY-HLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQL 379 (523)
T ss_dssp SSSCSHHHHHHHHHHHHHHHH--HTCCCCHHHHTTTSCHHHHHHHH-HHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHH
T ss_pred chhhhhHHHHHHHHHHhHHhh--cCCCCChHHhhchhHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHhcceeccCChhHH
Confidence 11 11 133333233333322 3542 22222221 133344667777766666666777777776653
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.15 E-value=1.9 Score=39.05 Aligned_cols=74 Identities=8% Similarity=0.076 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
..+..|.|++..+..+.+...++..++.++.+.. .-.+=.+++-+|..+.+.|+|++|+++....|++ +=+|
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---eP~N 111 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERNN 111 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CTTC
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---CCCC
Confidence 4667788888888777777888888887765431 1125689999999999999999999999999987 3455
Q ss_pred hH
Q 008796 398 LQ 399 (553)
Q Consensus 398 r~ 399 (553)
++
T Consensus 112 ~Q 113 (134)
T 3o48_A 112 KQ 113 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 236
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=85.56 E-value=37 Score=35.95 Aligned_cols=184 Identities=10% Similarity=-0.029 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCCh
Q 008796 255 FVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 255 ~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~ 334 (553)
.......|++|+..+... +.+...-+.+....|+.++|...|.+|+.. -... .. .+ .|....+.
T Consensus 195 ~~Rv~~~ye~al~~~p~~--------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~--~l---~~--~y~~~~e~ 258 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYA--------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM--FL---SL--YYGLVMDE 258 (493)
T ss_dssp HHHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS--HH---HH--HHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH--HH---HH--HHHhhcch
Confidence 345667888888765322 456777788888999999999999999988 3322 11 11 12111111
Q ss_pred HH-HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHH
Q 008796 335 ES-SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLAL 413 (553)
Q Consensus 335 e~-~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~l 413 (553)
++ ++.............+.......-...+...+....+.|+.+.|+..|.+| .. .+. ...+....+.+..
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~~~---~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 259 EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----EGV---GPHVFIYCAFIEY 330 (493)
T ss_dssp THHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----SCC---CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----CCC---ChHHHHHHHHHHH
Confidence 11 222111110000000000000012345566666666788999999999999 21 111 2233344455555
Q ss_pred HCC-ChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 008796 414 ALH-DTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYR 468 (553)
Q Consensus 414 alG-d~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a 468 (553)
..| +++.|+..++.|+... ++.+. .|. ...+.....|+.++|+..|+.+
T Consensus 331 ~~~~d~~~ar~ife~al~~~---~~~~~-~~~--~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH---PDSTL-LKE--EFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC---TTCHH-HHH--HHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHCCChHHHHHHHHHHHHHC---CCCHH-HHH--HHHHHHHHcCCHHHHHHHHHHH
Confidence 555 6999999999999854 44332 222 2455667789999888877775
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.02 E-value=2.6 Score=38.56 Aligned_cols=75 Identities=8% Similarity=0.080 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Q 008796 317 QAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMG 396 (553)
Q Consensus 317 ~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elG 396 (553)
-..+..|.|++..+....+...+++.++.++.+.. . -.+=.+++-++..+++.|+|++|+++....|++ +=+
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~----~-~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~ 109 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----E-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERN 109 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC----C-STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----c-cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCC
Confidence 44566778888888777777888888887775432 1 124578999999999999999999999999988 456
Q ss_pred ChH
Q 008796 397 NLQ 399 (553)
Q Consensus 397 dr~ 399 (553)
|++
T Consensus 110 n~Q 112 (144)
T 1y8m_A 110 NKQ 112 (144)
T ss_dssp CHH
T ss_pred cHH
Confidence 644
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.87 E-value=15 Score=37.87 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=63.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHccchh-------------------hHHHHHHHHHHHHHHhCChHH-HHHHHHhhcccccc
Q 008796 291 AHSVGCYSEAAFHYVEAAKITESKS-------------------MQAMCHAYAAVSYFCIGDAES-SSQAIDLIGPVYQM 350 (553)
Q Consensus 291 ~~alG~yeeAl~~f~~AL~l~~d~~-------------------g~A~aL~NLA~vyl~~Gd~e~-~~qAL~L~r~lgd~ 350 (553)
....|+.++|.+.+.+|+.+++... ....++..++..++..|++++ ...+-.++. .
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~-~--- 200 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF-E--- 200 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H---
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h---
Confidence 3446788888888888888764310 122445667778888999887 222222211 1
Q ss_pred cccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC
Q 008796 351 KDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGN 397 (553)
Q Consensus 351 ~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGd 397 (553)
...++. .+..+=.++...|+..+|++.|+++-+...+++|-
T Consensus 201 ----~P~~E~--~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~ 241 (388)
T 2ff4_A 201 ----HPYREP--LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 241 (388)
T ss_dssp ----STTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 122334 34455566789999999999999999987777775
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=76.49 E-value=16 Score=34.32 Aligned_cols=84 Identities=11% Similarity=-0.125 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQ 441 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~q 441 (553)
..|..+|...+.+|+++-|.++|+++=... .|.-+|...|+.+ .+..=..++..-||....
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~---------------~L~~Ly~~tg~~e----~L~kla~iA~~~g~~n~a 95 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHSFD---------------KLSFLYLVTGDVN----KLSKMQNIAQTREDFGSM 95 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCHH---------------HHHHHHHHHTCHH----HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCCHH---------------HHHHHHHHhCCHH----HHHHHHHHHHHCccHHHH
Confidence 579999999999999999999997663332 2445566666653 333334555666665544
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 442 IWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 442 a~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
-.+ +.-+|+.+++.+.+....+.
T Consensus 96 f~~-------~l~lGdv~~~i~lL~~~~r~ 118 (177)
T 3mkq_B 96 LLN-------TFYNNSTKERSSIFAEGGSL 118 (177)
T ss_dssp HHH-------HHHHTCHHHHHHHHHHTTCH
T ss_pred HHH-------HHHcCCHHHHHHHHHHCCCh
Confidence 433 33446666666655444433
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=71.17 E-value=20 Score=33.30 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=62.3
Q ss_pred HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC
Q 008796 337 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 416 (553)
Q Consensus 337 ~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG 416 (553)
|++|.+.+-+.. + ..-+.-+..|...+.. ...++.++|++.|+.|+.+ ++.. |-+...-++...++|
T Consensus 42 YerAia~~Pp~k----~-~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~-hKkF------AKiwi~~AqFEiRqg 108 (161)
T 4h7y_A 42 YSQAIEALPPDK----Y-GQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN-CKKF------AFVHISFAQFELSQG 108 (161)
T ss_dssp HHHHHHHSCGGG----G-TTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH-CTTB------HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccc----c-ccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH-hHHH------HHHHHHHHHHHHHcc
Confidence 778877766652 1 1222235666666655 5668999999999999998 4333 888888999999999
Q ss_pred ChHHHHHHHHHHHHH
Q 008796 417 DTVQAREILRSSLTL 431 (553)
Q Consensus 417 d~~eA~~~l~~AL~L 431 (553)
+...|+..+..|+.+
T Consensus 109 nl~kARkILg~AiG~ 123 (161)
T 4h7y_A 109 NVKKSKQLLQKAVER 123 (161)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcc
Confidence 999999999999874
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=69.45 E-value=44 Score=30.96 Aligned_cols=90 Identities=9% Similarity=0.066 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 008796 192 KECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVELTRSGFVEAQEALVQMKNWFIR 271 (553)
Q Consensus 192 dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~ 271 (553)
++.+..|++|... +++. .+.-|-.=+|+-++.++++. .++.++|.+.|..|+.+++.
T Consensus 36 ~rlrd~YerAia~---------~Pp~-------k~~~wrrYI~LWIrYA~~~e-------i~D~d~aR~vy~~a~~~hKk 92 (161)
T 4h7y_A 36 NKLIGRYSQAIEA---------LPPD-------KYGQNESFARIQVRFAELKA-------IQEPDDARDYFQMARANCKK 92 (161)
T ss_dssp HHHHHHHHHHHHH---------SCGG-------GGTTCHHHHHHHHHHHHHHH-------HHCGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHc---------CCcc-------ccccHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHhHH
Confidence 6666677766666 1222 02344334555555555532 27999999999999998443
Q ss_pred CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 008796 272 FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 312 (553)
Q Consensus 272 ~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~ 312 (553)
+ |-++..-...-.++|+...|...+.+|+...-
T Consensus 93 F--------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 93 F--------AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp B--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred H--------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 3 67888889999999999999999999987543
No 242
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=67.80 E-value=10 Score=41.12 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHH
Q 008796 240 QFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAM 319 (553)
Q Consensus 240 ~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~ 319 (553)
..|.+||-+..+++.+..|..+|.+|..+ .|+ .+..++.||.++...|++-+|.-||.+|+.. ..+ -..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~---~P~-----~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~P--f~~ 221 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL---VPS-----NGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFP--FPA 221 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT-----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBC--CHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh---CCC-----CCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCC--Chh
Confidence 46889999999999999999999999988 455 2458999999999999999999999999843 333 344
Q ss_pred HHHHHHHHHH
Q 008796 320 CHAYAAVSYF 329 (553)
Q Consensus 320 aL~NLA~vyl 329 (553)
+..||...+.
T Consensus 222 a~~nL~~~f~ 231 (497)
T 1ya0_A 222 ASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556655553
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.37 E-value=80 Score=37.01 Aligned_cols=205 Identities=5% Similarity=-0.046 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH-CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc----
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIR-FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE---- 312 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~-~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~---- 312 (553)
++..+-.||.++. |+.+++++.+..-+. .. .++ ..-.+-+...+|.++...+ +++.+....-+.-..
T Consensus 375 k~sA~aSLGlIh~--g~~~~gl~~L~~yL~--~~~s~~--~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~ 446 (963)
T 4ady_A 375 KFTATASLGVIHK--GNLLEGKKVMAPYLP--GSRASS--RFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSG 446 (963)
T ss_dssp HHHHHHHHHHHTS--SCTTTHHHHHTTTST--TSCCSC--HHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHhhhhcc--CchHHHHHHHHHhcc--ccCCCc--HHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCcccccc
Confidence 5566677887765 555555544433221 00 112 2345667888888876555 467877777665443
Q ss_pred c---hhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 313 S---KSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQ 389 (553)
Q Consensus 313 d---~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~ 389 (553)
+ ..-+.-+-..||.+|.-.|+.+-++.-+.++..-. .. -...+-+.+|.++.-.|+.+.....+.-+.+
T Consensus 447 ~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-------~~-~~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 447 DEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-------AT-SGEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-------HH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-------HH-HHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 1 22222355588999887776554444444333220 11 1235667789999988887776666665543
Q ss_pred HHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 008796 390 IAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDEYRR 469 (553)
Q Consensus 390 Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~ 469 (553)
- -+....-.+-..||.+ ..|+.+++... +.......|+...-.+-..+|-+|...|+...-...+....
T Consensus 519 ~-----~~e~vrR~aalgLGll--~~g~~e~~~~l----i~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 519 T-----QHGNITRGLAVGLALI--NYGRQELADDL----ITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp C-----SCHHHHHHHHHHHHHH--TTTCGGGGHHH----HHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred c-----CcHHHHHHHHHHHHhh--hCCChHHHHHH----HHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 1 1212222233445544 56666544444 34445678888888888889999999999765555555544
No 244
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=64.86 E-value=11 Score=35.06 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--cChHhHHHHH-HHHHHHHHHCCChHHHHHHHHHHHHHHHHhCC
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHM--GNLQLVSQYL-TILGNLALALHDTVQAREILRSSLTLAKKLYD 437 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~el--Gdr~leA~aL-~~LG~i~lalGd~~eA~~~l~~AL~LArklgD 437 (553)
.-+.-|..++..|+|=+|-+.|+..=+-.. .- -.....+.+. ..-|..++..|+...|..++.+|+...+....
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~-~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~ 110 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYG-RGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN 110 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTC-SSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 346678889999999999999998755431 11 0124556666 66788889999999999999999998777655
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=63.29 E-value=15 Score=39.71 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 008796 362 SLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLT 430 (553)
Q Consensus 362 ~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~ 430 (553)
.++..+|-+......++.|+.+|.+|+.+.= ..|. .+|.||-++...|+.-+|.-+|.+||.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P-~~G~------~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQ------PYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSH------HHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCC-CCCc------hHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 4778899999999999999999999999963 4554 789999999999999999998888875
No 246
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.18 E-value=1.9e+02 Score=31.51 Aligned_cols=224 Identities=11% Similarity=-0.014 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--HHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008796 172 AVYALVDLMVVILGRPKGLFKECMQRIQSGM--QTIQDALLKLGITDGVREVDLQHSAIWMAGVYLMLLMQFLENKVAVE 249 (553)
Q Consensus 172 ~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL--~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L~a~lLenLg~~~ 249 (553)
.+-+.++++++++..-.+.++++.++..+.. +.++...++ . |+ ..-|.+| ...+.++
T Consensus 133 E~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrr-----t-----lD---~l~ak~~--------fY~s~~~ 191 (523)
T 4b4t_S 133 EINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLR-----S-----LN---LINAKLW--------FYIYLSH 191 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHH-----h-----HH---HHHHHHH--------HHHHHHH
Confidence 5667889999999999999999888887665 232221111 1 11 1123333 3344444
Q ss_pred HhhCCHHHHH-------HHHHHHHHHHHHC---CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc--chhhH
Q 008796 250 LTRSGFVEAQ-------EALVQMKNWFIRF---PTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE--SKSMQ 317 (553)
Q Consensus 250 l~~Gr~aeAl-------~~l~qAL~L~r~~---~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~--d~~g~ 317 (553)
-..|+..+.. ..-...+..+|.. .| ..+.+.+++++=..+...+.|+.|.....++--.-. .....
T Consensus 192 e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D--~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~ 269 (523)
T 4b4t_S 192 ETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD--NETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLE 269 (523)
T ss_dssp -----------CHHHHHHHHTHHHHHHHHCCSCSS--SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHH
T ss_pred HHhcccccccccccchhhHHHHHHHHHHHHhcccC--cchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHH
Confidence 4555554432 2233445556652 22 245788999999999999999999999886642211 12234
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHh-hcccccccccccchhHHHHHHHHHHHHHHHcCCHH-----------HHHHHHH
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDL-IGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQ-----------EARNRLA 385 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L-~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~-----------EA~~~L~ 385 (553)
+.=+.++|.++.-+++|.+..+.|.. ++.. +.+......+-.++.-+-.+.+..|+.. .++.-|.
T Consensus 270 ~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka---p~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~ 346 (523)
T 4b4t_S 270 ARYFFYLSKINAIQLDYSTANEYIIAAIRKA---PHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYY 346 (523)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC---SCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHH
Confidence 66678899999999998873333332 2211 0010111113333333333333456643 3333344
Q ss_pred HHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHH
Q 008796 386 KGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQARE 423 (553)
Q Consensus 386 eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~ 423 (553)
.-...+ ..||......++..-..++...|.+.-...
T Consensus 347 ~Lv~Av--r~GdL~~F~~~L~~h~~~F~~Dgty~LI~r 382 (523)
T 4b4t_S 347 HLTKAV--KLGDLKKFTSTITKYKQLLLKDDTYQLCVR 382 (523)
T ss_dssp HHHHHH--HHTCHHHHHHHHHHTHHHHHHTTCTHHHHH
T ss_pred HHHHHH--HcCCHHHHHHHHHHhcceeccCChhHHHHH
Confidence 333343 479988888899999999999998876543
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.97 E-value=71 Score=32.87 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHH-HHHHHHHHHHHHHHhCC-hHHH
Q 008796 364 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQ-AREILRSSLTLAKKLYD-IPTQ 441 (553)
Q Consensus 364 L~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~e-A~~~l~~AL~LArklgD-~~~q 441 (553)
++.=+...+..|++.-|-+..---++... +-+-.. ....+..|..+.......+. =....+.|+.|+.+.|+ ..+-
T Consensus 58 L~~GA~~ll~~~Q~~sg~DL~~llvevy~-~~~~~~-~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gd 135 (336)
T 3lpz_A 58 LASVSQTLLRSGQGGSGGDLAVLLVDTFR-QAGQRV-DGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGD 135 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCCC-CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHH-HcCCCC-CHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCC
Confidence 33344555555666666666555555543 222211 12456666666665553222 24678999999998764 5565
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHH
Q 008796 442 IWALSVLTALYQQLGDRGNEMENDE 466 (553)
Q Consensus 442 a~aL~~Lg~ly~alGd~~~A~e~~e 466 (553)
-.-+..+|..|...|++.+|..++-
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 6677889999999999999888774
No 248
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=56.35 E-value=20 Score=30.13 Aligned_cols=71 Identities=17% Similarity=-0.039 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCCh
Q 008796 365 FAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDI 438 (553)
Q Consensus 365 ~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~ 438 (553)
+..|..++..|+|=||-+.+++.=.-.. ..-.....+.+...-|..+...|+. |..++.+|+...+..++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~-~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~~ 75 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKAT-GEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPCP 75 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCCc
Confidence 3467778888999999999998866541 1112345677777778888889998 999999999988777654
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=55.32 E-value=56 Score=33.18 Aligned_cols=127 Identities=6% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC
Q 008796 337 SSQAIDLIGPVYQMKDTINGVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 416 (553)
Q Consensus 337 ~~qAL~L~r~lgd~~g~~~~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG 416 (553)
+-+|.-.+|-+..+......-.+-...++.-+......|++..|-+...--++.. +..+.......+..|.++...-.
T Consensus 29 yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~--~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 29 YYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVY--DLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCSHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHHCC
Q ss_pred ChHHHH-HHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 008796 417 DTVQAR-EILRSSLTLAKKLYD-IPTQIWALSVLTALYQQLGDRGNEMEND 465 (553)
Q Consensus 417 d~~eA~-~~l~~AL~LArklgD-~~~qa~aL~~Lg~ly~alGd~~~A~e~~ 465 (553)
.....+ ..++.|+.|+.+.|+ ..+--.-+..+|..|...|++.+|..++
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
No 250
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=55.28 E-value=69 Score=28.33 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhC
Q 008796 360 EASLHFAYGLLLMRQQDFQE---ARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLY 436 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~E---A~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklg 436 (553)
-..+.|++|+++.+.....+ +...|++.++- +++...=.++..||-.+..+|++..|+.+++.-|.. .
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~----e 104 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----E 104 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----C
Confidence 34678999999988887777 66666654332 322233457889999999999999999999988866 2
Q ss_pred ChHHHHHHHHH
Q 008796 437 DIPTQIWALSV 447 (553)
Q Consensus 437 D~~~qa~aL~~ 447 (553)
-...|+.+|..
T Consensus 105 P~n~QA~~Lk~ 115 (126)
T 1nzn_A 105 PQNNQAKELER 115 (126)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 22345555443
No 251
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.98 E-value=2e+02 Score=29.56 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=59.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITE 312 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~ 312 (553)
.++..++..|++++|...+.++-.+....++......+..+...|.|+...+.|..+-.++..++....
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 456677889999999999999999999987755555688889999999999999999999998887544
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.21 E-value=59 Score=38.30 Aligned_cols=151 Identities=10% Similarity=0.030 Sum_probs=85.5
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHH--HHHHHHHHHH
Q 008796 166 EWLPKSAVYALVDLMVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGV--YLMLLMQFLE 243 (553)
Q Consensus 166 ~WLp~~~~~~Lv~l~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~v--y~~L~a~lLe 243 (553)
.|+|..... .+|.+.++...|.+++|..++++|-.- ++.... ...+...-..+... +.........
T Consensus 836 ~~~~~~~~~---~yl~g~~~L~~ge~~~A~~~F~kaa~~-------~~~~~~--l~~~~~~~~~~~~~~~~~~~l~~YY~ 903 (1139)
T 4fhn_B 836 GWLNSDPIA---VYLKALIYLKSKEAVKAVRCFKTTSLV-------LYSHTS--QFAVLREFQEIAEKYHHQNLLSCYYL 903 (1139)
T ss_dssp HHSCCCHHH---HHHHHHHHHHTTCHHHHHHHHHTCCCS-------CTTCCC--SCSSHHHHHHHHHTTTSCCSSHHHHH
T ss_pred hhccCCcHH---HHHHHHHHHhcCCHHHHHHHHHHHhhh-------hcccch--hhhhhcccccccccccccccHHHHHH
Confidence 388877654 377788889999999999999876332 111000 00000000000000 0000011234
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHH
Q 008796 244 NKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAY 323 (553)
Q Consensus 244 nLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~N 323 (553)
+++.+.-..+-++.+++....|++.....++ .....++..+=.++..+|+|++|-.-.. ...+...+-.|+..
T Consensus 904 hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~---~~~~~l~~~iFk~~L~l~~ye~Ay~aL~----~~pd~~~r~~cLr~ 976 (1139)
T 4fhn_B 904 HLSKKLFEESAYIDALEFSLLADASKETDDE---DLSIAITHETLKTACAAGKFDAAHVALM----VLSTTPLKKSCLLD 976 (1139)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHCCSCCH---HHHHHHHHHHHHHHHHHCCSGGGGHHHH----HHHHSSSCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccCCCh---hhHHHHHHHHHHHHHhhCCHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 4444556778999999999999876433222 1234467777788888999999865543 33444455566666
Q ss_pred HHHHHHHhCChH
Q 008796 324 AAVSYFCIGDAE 335 (553)
Q Consensus 324 LA~vyl~~Gd~e 335 (553)
+-......|..+
T Consensus 977 LV~~lce~~~~~ 988 (1139)
T 4fhn_B 977 FVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCHH
T ss_pred HHHHHHhCCChh
Confidence 655555555544
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.63 E-value=72 Score=37.59 Aligned_cols=103 Identities=11% Similarity=-0.018 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------HhccChHhHHHHHHHHHHHHHHCCChHHHHHHHH
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQIAH----------------NHMGNLQLVSQYLTILGNLALALHDTVQAREILR 426 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar----------------~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~ 426 (553)
.-|.+|.+++..|++++|..+|.+|-.-.. .......+.+..+..+..++-..|-++.+.+..+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 349999999999999999999988721110 0011123345567778888999999999999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 008796 427 SSLTLAKKLYDIPTQIWALSVLTALYQQLGDRGNEMENDE 466 (553)
Q Consensus 427 ~AL~LArklgD~~~qa~aL~~Lg~ly~alGd~~~A~e~~e 466 (553)
.|+..+.. +|......-+..+=+.+.+.|++++|....-
T Consensus 924 lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 924 LADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99876432 3444344445666778889999999977764
No 254
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=45.22 E-value=2.7e+02 Score=28.56 Aligned_cols=125 Identities=17% Similarity=0.137 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhhhhhhHHHHHHHHHhcccCCCcccccccccccccccccccccccc---CCCCCCc
Q 008796 89 QQLSSELDALNQSLSRPDLPSRERSALAGRQAKLQQRLRSLEDSSLTGKEFLEPSYFGNARQAWGDKLVL---APSPMDG 165 (553)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 165 (553)
.+|.++|+.+.+.+-.++-++.-+..|..-+.+|..=...+..+. .... +.| .|.|-+.. +..+...
T Consensus 46 ~~l~~~l~~lR~~~~~~~~~~~~~~~l~~Y~~~L~~l~~rf~~~~----~~~~-i~F-----~W~d~l~~~~~~~~~~~~ 115 (392)
T 1zb1_A 46 EKATSELDHLRNNANGELAPSSLSEQNLKYYSFLEHLYFRLGSKG----SRLK-MDF-----TWYDAEYSSAQKGLKYTQ 115 (392)
T ss_dssp HHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHGGGG----GGGC-CCE-----EEECCCCSSSCSSCEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHhcCCCCC----Cccc-cee-----eeecccccccCCCCceec
Confidence 344456666777766665445556666666665544333321110 1111 222 35554431 1111111
Q ss_pred cccchhhHHHHHHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhh
Q 008796 166 EWLPKSAVYALVDLMVVI----LGRPKGLFKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS 226 (553)
Q Consensus 166 ~WLp~~~~~~Lv~l~tv~----~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~ 226 (553)
.=+-=|-.+||.-+-.+. ....+..++.|.+++++|--+.+-+.+..-..+ -+||++.
T Consensus 116 ~~l~fE~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~---~~Dls~~ 177 (392)
T 1zb1_A 116 HTLAFEKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSP---SVDLQSE 177 (392)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCS---SGGGCHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCcCCHH
Confidence 111223344443322211 122333689999999999888665544433222 3566444
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=41.66 E-value=1.7e+02 Score=26.57 Aligned_cols=65 Identities=8% Similarity=-0.133 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 310 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l 310 (553)
-.+.+.+.........-.+-+.-.-++++..|+.- -..++.|+.-+..+|+|++|..+....|+.
T Consensus 42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~----RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 42 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR----RECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch----hHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35778888887777766666666667777777632 336788888888999999999999877754
No 256
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.92 E-value=1.8e+02 Score=29.94 Aligned_cols=102 Identities=16% Similarity=0.030 Sum_probs=74.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcc----------ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChH
Q 008796 370 LLMRQQDFQEARNRLAKGLQIAHNHMG----------NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIP 439 (553)
Q Consensus 370 ~~~~qGr~~EA~~~L~eAL~Lar~elG----------dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~ 439 (553)
+.....++++|.+++.+.........+ +......+...++..|+..|+..+|...++++=......+|..
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 344567899999999876443321111 1123445667889999999999999999999999999988754
Q ss_pred --HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 008796 440 --TQIWALSVLTALYQQLGDRGNEMENDEYRRKK 471 (553)
Q Consensus 440 --~qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~ 471 (553)
....-+...+..|+..+++..+..+.-.+...
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 55556677788899999998887766555543
No 257
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.76 E-value=40 Score=27.59 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=31.0
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 356 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
....+|..+...|.-.-..|+|++|..+|.+|++...
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4455788888888888999999999999999998874
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=38.69 E-value=1.7e+02 Score=26.24 Aligned_cols=65 Identities=8% Similarity=-0.120 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 242 LENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 310 (553)
Q Consensus 242 LenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l 310 (553)
-.+.+.+.+.......-.+-+.-.-++++..|.. .--.++.++..+..+|+|++|..+....|+.
T Consensus 43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~----~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3467777777766655444444445566666642 2346778888888999999999999876653
No 259
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=37.77 E-value=97 Score=29.12 Aligned_cols=57 Identities=14% Similarity=0.014 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccch--hhHHHHHHHHHHHHHHhCCh
Q 008796 278 ACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESK--SMQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 278 ~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~--~g~A~aL~NLA~vyl~~Gd~ 334 (553)
....+-++.+|.+++..++|.+|..+|.+|++..... .-.-.++..+-.+-+..|+.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 4456778899999999999999999999999986542 23556777777777788883
No 260
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.69 E-value=1.4e+02 Score=34.47 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------hccChHhHHHHHHHHHHHHHHCCChHHHHHHHH
Q 008796 363 LHFAYGLLLMRQQDFQEARNRLAKGLQIAHN----------------HMGNLQLVSQYLTILGNLALALHDTVQAREILR 426 (553)
Q Consensus 363 aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~----------------elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~ 426 (553)
.-|.+|.++...|++++|..+|++|-.-... ...-....+..+..+..++-..+-++.+.+..+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3499999999999999999999876421100 000011233355666667777777777777777
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q 008796 427 SSLTLAKKLYDIPTQIWALSVLTALYQQLG 456 (553)
Q Consensus 427 ~AL~LArklgD~~~qa~aL~~Lg~ly~alG 456 (553)
-|+..+. ..|...+......+=+++.+.|
T Consensus 922 lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 922 LADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 7776543 2444444444444444444443
No 261
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=36.24 E-value=37 Score=27.93 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC---ChhhhhhhhhhHHHHHHHHHhc
Q 008796 86 QEIQQLSSELDALNQSLSRPDL---PSRERSALAGRQAKLQQRLRSL 129 (553)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 129 (553)
..|..|..++..|+..|+.|++ ++.+-..|...+..+++.|..+
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999997 4456677888888888888773
No 262
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=36.23 E-value=4e+02 Score=27.88 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhCChHH
Q 008796 362 SLHFAYGLLLMRQQ-DFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKKLYDIPT 440 (553)
Q Consensus 362 ~aL~~LG~~~~~qG-r~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArklgD~~~ 440 (553)
..+...+..-...| +++.|+..|+.+++.. ++... .....+......|+...|+..++.+. ...
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~----~~~~~---~~~~yid~e~~~~~~~~aR~l~er~~--------k~~ 384 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH----PDSTL---LKEEFFLFLLRIGDEENARALFKRLE--------KTS 384 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC----TTCHH---HHHHHHHHHHHHTCHHHHHHHHHHSC--------CBH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHH--------HHH
Confidence 34444455555555 6999999999999864 22111 12234566678899999999999982 122
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Q 008796 441 QIWALSVLTALYQQLGDRGNEMENDEYRRKKLDE 474 (553)
Q Consensus 441 qa~aL~~Lg~ly~alGd~~~A~e~~e~a~~~~d~ 474 (553)
..| ....+.-...|+.+.+...+++.......
T Consensus 385 ~lw--~~~~~fE~~~G~~~~~r~v~~~~~~~~~~ 416 (493)
T 2uy1_A 385 RMW--DSMIEYEFMVGSMELFRELVDQKMDAIKA 416 (493)
T ss_dssp HHH--HHHHHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred HHH--HHHHHHHHHCCCHHHHHHHHHHHHHHhcc
Confidence 222 33334445669999999999888877664
No 263
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=35.95 E-value=3.7e+02 Score=27.48 Aligned_cols=141 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCCH---------HHHHHHHHHHHHHHHHC---------CchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008796 238 LMQFLENKVAVELTRSGF---------VEAQEALVQMKNWFIRF---------PTILQACESMIEMLRGQYAHSVGCYSE 299 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~---------aeAl~~l~qAL~L~r~~---------~dl~~~~~A~~~~lLG~~~~alG~yee 299 (553)
++.+|.|+|.++...|.. ..|.+++.+|--+|.-. +.......+.++..+..++.++..
T Consensus 141 ~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~AAG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l~LAQAQ--- 217 (380)
T 3c3r_A 141 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQ--- 217 (380)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCTTTSHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccc-------cchhHHHHHHHHHHHHHH
Q 008796 300 AAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTI-------NGVREEASLHFAYGLLLM 372 (553)
Q Consensus 300 Al~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~-------~~lr~eA~aL~~LG~~~~ 372 (553)
+-.+.+|+.--......|..-...+..| .+|++.+. ..+..... ....-+|.+++-.|....
T Consensus 218 -E~~~~Kai~~~~k~~liAkLa~~~~~~Y---------~~A~~~l~-~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~ 286 (380)
T 3c3r_A 218 -EVFFLKATRDKMKDAIIAKLANQAADYF---------GDAFKQCQ-YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAK 286 (380)
T ss_dssp -HHHHHHHHHTTCCHHHHHHHHHHHHHHH---------HHHHHHHT-TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCCChhHHHHHHHHHHHHH---------HHHHHHHc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HcCCHHHHHHHHHHHHHHHH
Q 008796 373 RQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 373 ~qGr~~EA~~~L~eAL~Lar 392 (553)
..+++.+|..+|+.|.+...
T Consensus 287 e~~k~GeaIa~L~~A~~~l~ 306 (380)
T 3c3r_A 287 QQKKFGEEIARLQHAAELIK 306 (380)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHH
No 264
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=35.66 E-value=5e+02 Score=28.88 Aligned_cols=141 Identities=12% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCC---------HHHHHHHHHHHHHHHHHC---------CchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008796 238 LMQFLENKVAVELTRSG---------FVEAQEALVQMKNWFIRF---------PTILQACESMIEMLRGQYAHSVGCYSE 299 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr---------~aeAl~~l~qAL~L~r~~---------~dl~~~~~A~~~~lLG~~~~alG~yee 299 (553)
++.+|.|+|.++...|. ...|.++|.+|--+|.-. +......-+.++..+..++.++..
T Consensus 126 ~a~vLfNlaal~s~~A~~~~r~~~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~~~~~Dls~~~l~~L~~l~LAQAQ--- 202 (704)
T 2xs1_A 126 KSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQ--- 202 (704)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCGGGSHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcccCHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccc-------cchhHHHHHHHHHHHHHH
Q 008796 300 AAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTI-------NGVREEASLHFAYGLLLM 372 (553)
Q Consensus 300 Al~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~-------~~lr~eA~aL~~LG~~~~ 372 (553)
+-.+.+|+.--......|......+..| .+|+..+. +.+..... ....-+|.+++..|....
T Consensus 203 -E~~~~Kai~~~~k~~liAkLa~~~~~~Y---------~~A~~~l~-~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~ 271 (704)
T 2xs1_A 203 -EVFFLKATRDKMKDAIIAKLANQAADYF---------GDAFKQCQ-YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAK 271 (704)
T ss_dssp -HHHHHHHHHTTCCHHHHHHHHHHHHHHH---------HHHHHHHH-TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCCChhHHHHHHHHHHHHH---------HHHHHHHc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HcCCHHHHHHHHHHHHHHHH
Q 008796 373 RQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 373 ~qGr~~EA~~~L~eAL~Lar 392 (553)
..+++.+|..+|+.|.....
T Consensus 272 e~~k~GeaIa~L~~A~~~l~ 291 (704)
T 2xs1_A 272 QQYYFGEEIARLQHAAELIK 291 (704)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
No 265
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=33.84 E-value=27 Score=28.53 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008796 180 MVVILGRPKGLFKECMQRIQSGMQTIQDALLKLGIT 215 (553)
Q Consensus 180 ~tv~~~~~~G~~dka~ky~ekAL~~~~~~l~klG~~ 215 (553)
-.+--+-.-|+||.|..||+-+++.+++.+..++++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~ 52 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDT 52 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 334445567999999999999999999999887744
No 266
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=33.38 E-value=3.2e+02 Score=30.97 Aligned_cols=122 Identities=11% Similarity=-0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHH--
Q 008796 283 IEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREE-- 360 (553)
Q Consensus 283 ~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~e-- 360 (553)
+..++......-+.++.|...|+ ......-.+..+...+.+.......++--+|..++.+. .
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le----~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~------------l~~ 314 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLK----GLTKKDPIHDIYYKTAMITILDHIETKELDMITILNET------------LDP 314 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHH----HHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHcccccHHHHHHHHHH----HHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH------------HHH
Q ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCCCh
Q 008796 361 ----------------------ASLHFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALHDT 418 (553)
Q Consensus 361 ----------------------A~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalGd~ 418 (553)
+..|..-+......|+|+-|+....+|..++ ..+-.+...|+++|..+||+
T Consensus 315 ~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~ 387 (754)
T 4gns_B 315 LLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEY 387 (754)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCH
T ss_pred hhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccH
Q ss_pred HHHHHHHHH
Q 008796 419 VQAREILRS 427 (553)
Q Consensus 419 ~eA~~~l~~ 427 (553)
+.|.=.+.+
T Consensus 388 e~ALLtLNS 396 (754)
T 4gns_B 388 EKALFAINS 396 (754)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
No 267
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=32.53 E-value=4.2e+02 Score=27.05 Aligned_cols=142 Identities=13% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhC------------CHHHHHHHHHHHHHHHHH-----CCc------hhhhhHHHHHHHHHHHHHHc
Q 008796 238 LMQFLENKVAVELTRS------------GFVEAQEALVQMKNWFIR-----FPT------ILQACESMIEMLRGQYAHSV 294 (553)
Q Consensus 238 ~a~lLenLg~~~l~~G------------r~aeAl~~l~qAL~L~r~-----~~d------l~~~~~A~~~~lLG~~~~al 294 (553)
++.+|.|+|.++...| ....|.++|.+|--+|.- .+. ........++..+-.++.++
T Consensus 113 ~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~~~~~~~~~~~~~~Dls~~~l~~L~~l~LAQ 192 (376)
T 3r9m_A 113 LISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQCQAE 192 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTGGGCSSCCCTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCHHHHHHHHHHHHHH
Q ss_pred CCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccc-------cchhHHHHHHHHH
Q 008796 295 GCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTI-------NGVREEASLHFAY 367 (553)
Q Consensus 295 G~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~-------~~lr~eA~aL~~L 367 (553)
+ =+-.+.+|+.--......|..-...+..| .+|.+.+....+..... ....-+|.+++-.
T Consensus 193 A----QE~~~~Kai~~~~k~~liAKLa~q~~~~Y---------~~a~~~l~~~~~~i~~~W~~~v~~K~~~~~A~A~y~~ 259 (376)
T 3r9m_A 193 A----QEVTIARAIELKHAPGLIAALAYETANFY---------QKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYH 259 (376)
T ss_dssp H----HHHHHHHHHHTTCCHHHHHHHHHHHHHHH---------HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHhcCCChHHHHHHHHHHHHHH---------HHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 368 GLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 368 G~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
|......+++.||..+|+.|.+..+
T Consensus 260 a~~~~~~~k~GeaIa~L~~A~~~l~ 284 (376)
T 3r9m_A 260 GETLLASDKCGEAIRSLQEAEKLYA 284 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHH
No 268
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=31.85 E-value=78 Score=25.65 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 359 EEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 359 ~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.+|..+...|.-.-..|+|++|..+|.+|++...
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4677777777888888999999999999988864
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.33 E-value=73 Score=27.06 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 358 REEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 358 r~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.+.|..+-..+..+...|+|+||+++.++|.....
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 44788999999999999999999999999987764
No 270
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=31.03 E-value=3.4e+02 Score=26.35 Aligned_cols=74 Identities=8% Similarity=0.016 Sum_probs=54.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhccC--hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH----HHhCChHHHHHHHH
Q 008796 373 RQQDFQEARNRLAKGLQIAHNHMGN--LQLVSQYLTILGNLALALHDTVQAREILRSSLTLA----KKLYDIPTQIWALS 446 (553)
Q Consensus 373 ~qGr~~EA~~~L~eAL~Lar~elGd--r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA----rklgD~~~qa~aL~ 446 (553)
..|+-+.|...|++|.+++..++.. +...+-+||.==--|--++++++|..+.++|+..+ +...|....+.+..
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~~E~m~~~~~~~~ 216 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENMDRKAQITV 216 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 3566789999999999999754443 55567777776667778999999999999998874 34444444444433
No 271
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=29.23 E-value=68 Score=27.24 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=28.0
Q ss_pred hhhhhHHHHHHHHHHHhH----HHHHHHHHHHHHHhhcC
Q 008796 69 HHVDNLDAAMKADKQKMQ----EIQQLSSELDALNQSLS 103 (553)
Q Consensus 69 ~~~~~ld~~~~~~~~~~~----~~~~l~~~~~~~~~~~~ 103 (553)
+-|..|-+.++.+.-+.+ +++||+.|+..|++.|+
T Consensus 46 qTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 46 LTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999988755543 46899999999999774
No 272
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=28.97 E-value=88 Score=25.62 Aligned_cols=34 Identities=6% Similarity=-0.001 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIR 271 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~ 271 (553)
.+..+-.-+.-.-..|+|.+|+..|.+|++.|-.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555666666667889999999999999998775
No 273
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=28.20 E-value=1.1e+02 Score=24.53 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 357 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
...+|..+...|.-.-..|+|++|..+|.+|++.+-
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 345788888888888899999999999999999763
No 274
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.17 E-value=1.1e+02 Score=28.25 Aligned_cols=67 Identities=7% Similarity=-0.062 Sum_probs=49.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHccc
Q 008796 247 AVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIE-MLRGQYAHSVGCYSEAAFHYVEAAKITES 313 (553)
Q Consensus 247 ~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~-~lLG~~~~alG~yeeAl~~f~~AL~l~~d 313 (553)
...+..|+|-+|-+.++....-.....+--....+.|. ...|.++...|+..-|...+.+|+.....
T Consensus 40 i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~ 107 (161)
T 2ijq_A 40 VRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRG 107 (161)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 34466799999999999876543221111123467788 88999999999999999999999986654
No 275
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=27.15 E-value=5.2e+02 Score=30.84 Aligned_cols=89 Identities=12% Similarity=-0.077 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH--CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchh
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIR--FPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKS 315 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~--~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~ 315 (553)
.-..++.|..++...|+.++|.+.+..+.++..+ .||. ..++.+=.-++..|++++|...|.+=...--.+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv------vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL------DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH------hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 3456788899999999999999999998776433 5773 3667777777889999999999984432111122
Q ss_pred hHHHHHHHHHHHHHHhCCh
Q 008796 316 MQAMCHAYAAVSYFCIGDA 334 (553)
Q Consensus 316 g~A~aL~NLA~vyl~~Gd~ 334 (553)
..+.+.+-..+.+.|+.
T Consensus 200 --vvTYntLI~glcK~G~~ 216 (1134)
T 3spa_A 200 --LLSYAAALQCMGRQDQD 216 (1134)
T ss_dssp --HHHHHHHHHHHHHHTCC
T ss_pred --HHHHHHHHHHHHhCCCc
Confidence 23333333355556664
No 276
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=25.86 E-value=5.4e+02 Score=26.15 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccccchhh
Q 008796 191 FKECMQRIQSGMQTIQDALLKLGITDGVREVDLQHS 226 (553)
Q Consensus 191 ~dka~ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~ 226 (553)
++.|.+++++|--+.+=+.+..... .-+|+.+.
T Consensus 142 lK~A~~~fq~AAG~f~~l~~~~~~~---~~~Dls~~ 174 (363)
T 3rau_A 142 MKVSCTHFQCAAGAFAYLREHFPQA---YSVDMSRQ 174 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSC---SSGGGSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---CCCcCCHH
Confidence 6778888888877765554444322 23466444
No 277
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=25.74 E-value=96 Score=26.90 Aligned_cols=36 Identities=11% Similarity=-0.043 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 357 VREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 357 lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
...+|..+...|.-.-..|+|++|+.+|.+|++++-
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 455778888888888888999999999999998864
No 278
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.53 E-value=1.1e+02 Score=25.14 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 360 EASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 360 eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.|..+..-|.-.-..|+|++|..+|.+|++.+-
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 566777777888889999999999999998864
No 279
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.15 E-value=1.3e+02 Score=24.92 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008796 356 GVREEASLHFAYGLLLMRQQDFQEARNRLAKGLQIAH 392 (553)
Q Consensus 356 ~lr~eA~aL~~LG~~~~~qGr~~EA~~~L~eAL~Lar 392 (553)
.....|..+...|.-.-..|+|++|..+|.+|++..-
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~ 46 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL 46 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4445788888888888999999999999999998874
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.08 E-value=1.6e+02 Score=34.02 Aligned_cols=108 Identities=8% Similarity=-0.073 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHhCChHHHHHHHHhhcccccccccccchhHHHHH
Q 008796 284 EMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQAMCHAYAAVSYFCIGDAESSSQAIDLIGPVYQMKDTINGVREEASL 363 (553)
Q Consensus 284 ~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~A~aL~NLA~vyl~~Gd~e~~~qAL~L~r~lgd~~g~~~~lr~eA~a 363 (553)
-+.+|..+...|++++|..+|++|..-....... +.. ......++.+... ... .+.-
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~--------------~~~--~~~~~~ll~~~e~-----~~~--~~~Y 899 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ--------------FAV--LREFQEIAEKYHH-----QNL--LSCY 899 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCS--------------CGG--GHHHHHHHHHTTT-----CSH--HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccc--------------ccc--hhhhhhccCcccc-----cch--hHHH
Confidence 3778888888888888888888664322110000 000 0111111111100 011 2335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccChHhHHHHHHHHHHHHHHCC
Q 008796 364 HFAYGLLLMRQQDFQEARNRLAKGLQIAHNHMGNLQLVSQYLTILGNLALALH 416 (553)
Q Consensus 364 L~~LG~~~~~qGr~~EA~~~L~eAL~Lar~elGdr~leA~aL~~LG~i~lalG 416 (553)
+..+..+.-..|-|+-+..+.+.|+..+ +..|.......+..+=.++.++|
T Consensus 900 Y~hV~~LFE~~~a~~~vi~fA~lAI~~~--~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 900 YLHLSKKLFEESAYIDALEFSLLADASK--ETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhc--ccCCccchHHHHHHHHHHHhhCC
Confidence 5666777778888999999999998876 35676777776666666665554
No 281
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=24.99 E-value=97 Score=24.91 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccchh
Q 008796 285 MLRGQYAHSVGCYSEAAFHYVEAAKITESKS 315 (553)
Q Consensus 285 ~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~ 315 (553)
..+|....+.|.+++|..||-.|+...+.+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 4578888999999999999999999877754
No 282
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=24.81 E-value=45 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 365 FAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 365 ~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
..+|..+..+|++++|..||.+|+.++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 457999999999999999999999986
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=24.70 E-value=1.3e+02 Score=28.12 Aligned_cols=94 Identities=13% Similarity=-0.022 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccchhhH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKITESKSMQ 317 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~g~ 317 (553)
.+..+..+|..++.+++|.+|.+++.+|...|.+... ...-.++..+=-+.+-+|+++.-.- ++ ...- .
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~---~~k~~IL~yLIp~~Ll~G~iP~~~l-l~----~~~~---~ 81 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ---KNKRMILIYLLPVKMLLGHMPTVEL-LK----KYHL---M 81 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH---HHHHHHHHHHHHHHHHTTCEECHHH-HH----HTTC---G
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH---HHHHHHHHHHHHHHHHcCCCCCHHH-hh----hCch---h
Confidence 5667899999999999999999999999988654332 3344566666556666777654221 21 1111 1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHhhc
Q 008796 318 AMCHAYAAVSYFCIGDAESSSQAIDLIG 345 (553)
Q Consensus 318 A~aL~NLA~vyl~~Gd~e~~~qAL~L~r 345 (553)
...++..++ +.||...++++|+-.+
T Consensus 82 --~y~~L~~Av-r~Gdl~~f~~~l~~~~ 106 (203)
T 3t5x_A 82 --QFAEVTRAV-SEGNLLLLHEALAKHE 106 (203)
T ss_dssp --GGHHHHHHH-HHTCHHHHHHHHHHTH
T ss_pred --HHHHHHHHH-HhCCHHHHHHHHHHhH
Confidence 233555444 3488777777776443
No 284
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.13 E-value=90 Score=27.45 Aligned_cols=36 Identities=31% Similarity=0.496 Sum_probs=28.2
Q ss_pred hhhhhhHHHHHHHHHHHh-HHHHHHHHHHHHHHhhcC
Q 008796 68 AHHVDNLDAAMKADKQKM-QEIQQLSSELDALNQSLS 103 (553)
Q Consensus 68 ~~~~~~ld~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 103 (553)
.+-|..|-+.++.+.-+. ..+|||+.|+..|++.|+
T Consensus 52 NqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 52 NHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889998888764333 346999999999999875
No 285
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=23.98 E-value=2.4e+02 Score=27.54 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhcc--ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 008796 378 QEARNRLAKGLQIAHNHMG--NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 378 ~EA~~~L~eAL~Lar~elG--dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArk 434 (553)
+.|...|++|.+++..++. ++...+-+||.=-.-|--++++++|..+.++|++-|-.
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~ 208 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMA 208 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 6788999999999965565 46677888887555556789999999999999987643
No 286
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.85 E-value=1.6e+02 Score=25.01 Aligned_cols=37 Identities=14% Similarity=-0.027 Sum_probs=31.1
Q ss_pred hHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Q 008796 398 LQLVSQYLTILGNLALALHDTVQAREILRSSLTLAKK 434 (553)
Q Consensus 398 r~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LArk 434 (553)
+...|+.....++.++..|++++|+++++.|.+...+
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4556888889999999999999999999999876433
No 287
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.67 E-value=73 Score=26.97 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008796 365 FAYGLLLMRQQDFQEARNRLAKGLQIA 391 (553)
Q Consensus 365 ~~LG~~~~~qGr~~EA~~~L~eAL~La 391 (553)
..+|..+..+|++++|..||.+|+.++
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 457999999999999999999999987
No 288
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=22.99 E-value=1.1e+02 Score=26.48 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNWFIR 271 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~ 271 (553)
++..|-..+.-.=..|+|.+|+.+|.+|+++|-.
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3334444554455678888888888888888765
No 289
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=22.78 E-value=1.3e+02 Score=24.21 Aligned_cols=33 Identities=18% Similarity=0.014 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Q 008796 239 MQFLENKVAVELTRSGFVEAQEALVQMKNWFIR 271 (553)
Q Consensus 239 a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L~r~ 271 (553)
+..+-..+.-.-..|+|.+|+..|.+|++.|..
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 333444444445678888888888888887665
No 290
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=22.63 E-value=2.6e+02 Score=27.72 Aligned_cols=55 Identities=11% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcc--ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 378 QEARNRLAKGLQIAHNHMG--NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 378 ~EA~~~L~eAL~Lar~elG--dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
+.|...|++|.+++..++. ++...+-+||.=---|--++++++|..+.++|++-|
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
No 291
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.03 E-value=7.2e+02 Score=26.26 Aligned_cols=160 Identities=8% Similarity=0.024 Sum_probs=0.0
Q ss_pred Ccccc--chhhHHHHHHHHHHHHHhcCCCHHHHH----HHHHHHHHHHHHHHHHcCCCCCcccccchhhHHHHHHHHHHH
Q 008796 164 DGEWL--PKSAVYALVDLMVVILGRPKGLFKECM----QRIQSGMQTIQDALLKLGITDGVREVDLQHSAIWMAGVYLML 237 (553)
Q Consensus 164 ~~~WL--p~~~~~~Lv~l~tv~~~~~~G~~dka~----ky~ekAL~~~~~~l~klG~~~~~~e~~l~~~~~~~a~vy~~L 237 (553)
++.|+ =-+-+....-++.......--..+.-. ...+.+-..+.+...-+...++..-..-.+.+-| ++|
T Consensus 102 ~~~wi~~l~p~~~~~~~~l~~~a~~lD~~~~~~~~~~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~--~~l--- 176 (455)
T 3t5v_B 102 NAPHIEMLIPVATRETEFIINLAGKLDSFHLQLHTRSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQR--ILL--- 176 (455)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCTTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHH--HHH---
T ss_pred CCchHHHhHHHHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcccccccccch--hHH---
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH-----HHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-c
Q 008796 238 LMQFLENKVAVELTRSGFVEAQEALVQMKNW-----FIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI-T 311 (553)
Q Consensus 238 ~a~lLenLg~~~l~~Gr~aeAl~~l~qAL~L-----~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l-~ 311 (553)
-+.++|--++...++..-+-..++..-.- +..+|. ....+-++-+|.++...++|.+|..++.+|++. .
T Consensus 177 --~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~---~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lc 251 (455)
T 3t5v_B 177 --YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQL---DQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLL 251 (455)
T ss_dssp --HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCc---cceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcC
Q ss_pred c-------chhhHHHHHHHHHHHHHHhCC
Q 008796 312 E-------SKSMQAMCHAYAAVSYFCIGD 333 (553)
Q Consensus 312 ~-------d~~g~A~aL~NLA~vyl~~Gd 333 (553)
- ...-.-.++..+-.+.+..|+
T Consensus 252 p~~~~~~~~~~n~~~ILkyLIpv~LLlG~ 280 (455)
T 3t5v_B 252 NLPLTNQAITRNGTRILNYMIPTGLILGK 280 (455)
T ss_dssp HCCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CccccchhhhhHHHHHHHHHHHHHHHcCC
No 292
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=21.97 E-value=5.8e+02 Score=25.12 Aligned_cols=55 Identities=9% Similarity=-0.178 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008796 256 VEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAKI 310 (553)
Q Consensus 256 aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~l 310 (553)
+.|.+.|++|.++....|..-....+.++|.--.|+.-++..++|.....+|..-
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 227 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM 227 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4788899999999933444222335677888888888899999999998888763
No 293
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.85 E-value=2.8e+02 Score=27.27 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcc--ChHhHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Q 008796 378 QEARNRLAKGLQIAHNHMG--NLQLVSQYLTILGNLALALHDTVQAREILRSSLTLA 432 (553)
Q Consensus 378 ~EA~~~L~eAL~Lar~elG--dr~leA~aL~~LG~i~lalGd~~eA~~~l~~AL~LA 432 (553)
+.|...|++|..++..++. ++...+-+||.==.-|--++++.+|..+.++|++-|
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
No 294
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.68 E-value=1.8e+02 Score=24.12 Aligned_cols=56 Identities=11% Similarity=-0.005 Sum_probs=24.3
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008796 250 LTRSGFVEAQEALVQMKNWFIRFPTILQACESMIEMLRGQYAHSVGCYSEAAFHYVEAAK 309 (553)
Q Consensus 250 l~~Gr~aeAl~~l~qAL~L~r~~~dl~~~~~A~~~~lLG~~~~alG~yeeAl~~f~~AL~ 309 (553)
+..|+|-+|-+.++....-... |. -....+.|....|.++...|+. |...+.+|+.
T Consensus 12 fn~g~~~eaHEvlE~~W~~~~~-~~-~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 12 WRAGRYYEVHEVLEPYWLKATG-EE-RRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCH-HH-HHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHhhCCC-ch-HHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3445555555555544433210 11 0112344444455555445544 5555554444
No 295
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=20.16 E-value=1.3e+02 Score=25.35 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccchh
Q 008796 285 MLRGQYAHSVGCYSEAAFHYVEAAKITESKS 315 (553)
Q Consensus 285 ~lLG~~~~alG~yeeAl~~f~~AL~l~~d~~ 315 (553)
..+|....+.|.++.|+.||-.|+...+.+.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 4578888899999999999999998776654
Done!