Query 008797
Match_columns 553
No_of_seqs 93 out of 105
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 16:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05918 API5: Apoptosis inhib 100.0 3E-162 8E-167 1312.7 37.7 534 10-553 1-556 (556)
2 KOG2213 Apoptosis inhibitor 5/ 100.0 3E-117 6E-122 913.1 37.5 398 9-480 2-400 (460)
3 KOG2213 Apoptosis inhibitor 5/ 98.8 1.8E-09 3.9E-14 113.9 4.1 305 92-475 122-435 (460)
4 PF05918 API5: Apoptosis inhib 98.8 3.7E-06 8.1E-11 93.6 29.1 378 30-468 57-463 (556)
5 PF01602 Adaptin_N: Adaptin N 97.8 0.0019 4.1E-08 70.2 20.6 127 40-170 88-218 (526)
6 PF10508 Proteasom_PSMB: Prote 97.8 0.014 2.9E-07 65.0 27.4 341 9-371 53-430 (503)
7 PTZ00429 beta-adaptin; Provisi 97.6 0.027 5.8E-07 65.7 27.2 103 34-138 70-173 (746)
8 PF12717 Cnd1: non-SMC mitotic 97.6 0.002 4.3E-08 61.8 14.5 143 46-196 3-154 (178)
9 PF13646 HEAT_2: HEAT repeats; 96.4 0.012 2.6E-07 48.6 7.2 75 43-129 12-87 (88)
10 PF12717 Cnd1: non-SMC mitotic 96.4 0.039 8.4E-07 52.9 11.3 126 81-217 1-135 (178)
11 PF01602 Adaptin_N: Adaptin N 96.4 0.2 4.2E-06 54.7 18.0 133 32-170 42-178 (526)
12 PRK09687 putative lyase; Provi 96.3 0.17 3.7E-06 52.4 16.4 130 30-168 52-183 (280)
13 KOG1020 Sister chromatid cohes 96.2 0.35 7.5E-06 59.6 20.3 105 30-135 853-961 (1692)
14 cd00020 ARM Armadillo/beta-cat 96.2 0.017 3.6E-07 49.3 7.0 98 67-169 6-116 (120)
15 PF10363 DUF2435: Protein of u 96.2 0.018 4E-07 50.3 7.2 83 67-149 2-87 (92)
16 PF13646 HEAT_2: HEAT repeats; 95.9 0.032 7E-07 46.0 7.1 84 70-166 1-85 (88)
17 PTZ00429 beta-adaptin; Provisi 95.9 1.2 2.6E-05 52.3 22.2 102 43-144 152-277 (746)
18 PRK09687 putative lyase; Provi 95.8 0.12 2.6E-06 53.5 12.2 126 32-169 90-217 (280)
19 KOG3973 Uncharacterized conser 95.4 1.3 2.8E-05 47.5 18.2 26 527-552 356-384 (465)
20 KOG3973 Uncharacterized conser 95.3 5.2 0.00011 43.1 23.5 8 473-480 319-326 (465)
21 KOG1058 Vesicle coat complex C 95.2 0.92 2E-05 52.8 17.5 250 62-368 128-396 (948)
22 cd00020 ARM Armadillo/beta-cat 94.9 0.16 3.4E-06 43.3 8.2 90 43-132 19-118 (120)
23 PF14500 MMS19_N: Dos2-interac 94.4 2.4 5.2E-05 43.7 16.8 227 77-332 8-258 (262)
24 PLN03200 cellulose synthase-in 94.3 1.5 3.3E-05 56.4 17.8 116 34-149 448-574 (2102)
25 KOG0921 Dosage compensation co 94.2 0.062 1.3E-06 63.1 5.2 25 60-84 676-700 (1282)
26 KOG1061 Vesicle coat complex A 94.1 1.9 4E-05 50.3 16.6 114 35-150 52-170 (734)
27 PRK13800 putative oxidoreducta 93.5 1.4 2.9E-05 52.7 14.9 78 43-131 633-710 (897)
28 PF01603 B56: Protein phosphat 92.8 4.2 9E-05 44.5 16.3 188 101-355 128-321 (409)
29 KOG2171 Karyopherin (importin) 92.7 4.1 8.8E-05 49.4 17.0 142 29-171 115-276 (1075)
30 PRK13800 putative oxidoreducta 91.8 0.63 1.4E-05 55.5 9.1 90 66-169 619-709 (897)
31 KOG1059 Vesicle coat complex A 91.3 6.5 0.00014 46.0 15.8 133 74-213 305-459 (877)
32 KOG1061 Vesicle coat complex A 91.1 4.2 9.1E-05 47.5 14.3 316 33-371 69-426 (734)
33 KOG0921 Dosage compensation co 90.9 0.29 6.3E-06 57.8 4.9 15 451-467 1128-1142(1282)
34 PF12348 CLASP_N: CLASP N term 90.5 1.4 3.1E-05 42.9 8.9 162 29-207 23-192 (228)
35 PF05804 KAP: Kinesin-associat 90.4 14 0.0003 43.5 18.0 77 277-364 532-611 (708)
36 KOG2274 Predicted importin 9 [ 90.4 48 0.0011 40.0 22.3 91 50-140 469-565 (1005)
37 PF02985 HEAT: HEAT repeat; I 89.9 0.16 3.5E-06 35.3 1.1 28 70-97 2-29 (31)
38 KOG1059 Vesicle coat complex A 89.7 9.2 0.0002 44.8 15.3 236 63-334 139-381 (877)
39 PLN03200 cellulose synthase-in 89.4 5.5 0.00012 51.6 14.6 130 33-167 610-758 (2102)
40 PF10508 Proteasom_PSMB: Prote 88.8 46 0.00099 37.4 22.2 124 43-170 50-186 (503)
41 PF13001 Ecm29: Proteasome sta 88.4 2.6 5.6E-05 47.2 10.0 131 5-135 268-444 (501)
42 PF13513 HEAT_EZ: HEAT-like re 88.3 0.75 1.6E-05 35.3 4.0 49 83-131 2-54 (55)
43 KOG0212 Uncharacterized conser 87.5 12 0.00026 42.8 14.1 143 31-180 124-286 (675)
44 cd06561 AlkD_like A new struct 87.2 3.1 6.6E-05 39.7 8.4 115 29-149 71-185 (197)
45 KOG2023 Nuclear transport rece 86.8 2.6 5.7E-05 48.8 8.7 193 73-270 220-450 (885)
46 COG5096 Vesicle coat complex, 86.6 48 0.001 39.4 18.9 94 43-138 67-160 (757)
47 PF12755 Vac14_Fab1_bd: Vacuol 86.6 1.3 2.8E-05 39.1 5.0 67 67-134 26-96 (97)
48 PF08713 DNA_alkylation: DNA a 84.4 3.1 6.6E-05 40.2 6.9 80 67-148 119-198 (213)
49 KOG2945 Predicted RNA-binding 84.3 0.58 1.3E-05 50.4 2.0 31 518-550 307-341 (365)
50 KOG1062 Vesicle coat complex A 82.1 68 0.0015 38.3 17.4 70 80-149 246-318 (866)
51 KOG2259 Uncharacterized conser 82.1 68 0.0015 37.7 17.0 94 72-170 377-472 (823)
52 KOG3428 Small nuclear ribonucl 81.6 0.81 1.8E-05 41.4 1.6 16 535-551 94-109 (109)
53 COG5096 Vesicle coat complex, 81.6 9.6 0.00021 45.0 10.6 113 34-149 76-210 (757)
54 smart00638 LPD_N Lipoprotein N 81.1 19 0.00041 40.6 12.5 136 7-142 324-483 (574)
55 smart00543 MIF4G Middle domain 80.5 48 0.001 31.1 13.3 137 232-402 35-174 (200)
56 KOG1943 Beta-tubulin folding c 80.3 14 0.00031 44.9 11.5 65 52-118 527-592 (1133)
57 KOG0116 RasGAP SH3 binding pro 78.4 2.2 4.8E-05 47.0 3.9 12 16-27 23-34 (419)
58 PF04826 Arm_2: Armadillo-like 78.4 12 0.00025 38.7 9.0 131 30-169 10-159 (254)
59 KOG2256 Predicted protein invo 78.3 92 0.002 36.4 16.6 92 55-148 269-370 (661)
60 KOG2171 Karyopherin (importin) 77.2 23 0.0005 43.3 12.0 83 67-149 388-476 (1075)
61 KOG3172 Small nuclear ribonucl 76.3 1.5 3.2E-05 39.6 1.6 11 457-467 74-84 (119)
62 PF12348 CLASP_N: CLASP N term 75.9 28 0.0006 33.9 10.5 92 45-137 67-163 (228)
63 TIGR02270 conserved hypothetic 75.2 15 0.00032 40.5 9.2 86 69-169 87-172 (410)
64 PF13513 HEAT_EZ: HEAT-like re 74.4 2.7 5.8E-05 32.2 2.4 49 47-95 3-55 (55)
65 cd07064 AlkD_like_1 A new stru 73.7 41 0.00088 33.4 11.1 108 34-147 85-192 (208)
66 PF02854 MIF4G: MIF4G domain; 73.6 22 0.00048 33.2 8.9 164 203-404 10-185 (209)
67 PF08506 Cse1: Cse1; InterPro 73.0 54 0.0012 35.6 12.7 55 278-336 301-358 (370)
68 PF10521 DUF2454: Protein of u 72.8 25 0.00054 36.4 9.8 66 70-135 121-204 (282)
69 KOG0116 RasGAP SH3 binding pro 72.5 3 6.5E-05 46.0 3.1 10 533-542 396-405 (419)
70 KOG2973 Uncharacterized conser 72.3 49 0.0011 35.6 11.7 67 306-375 221-290 (353)
71 PF11698 V-ATPase_H_C: V-ATPas 72.2 5.7 0.00012 36.7 4.3 52 44-95 57-113 (119)
72 PF12719 Cnd3: Nuclear condens 71.2 33 0.00073 35.5 10.3 63 76-138 35-97 (298)
73 KOG2259 Uncharacterized conser 70.8 31 0.00067 40.4 10.5 71 50-125 180-254 (823)
74 PF05823 Gp-FAR-1: Nematode fa 70.6 9.9 0.00022 36.3 5.8 80 246-325 69-152 (154)
75 PF10165 Ric8: Guanine nucleot 70.6 1.8E+02 0.0039 32.3 18.3 73 75-147 39-120 (446)
76 KOG3262 H/ACA small nucleolar 69.7 13 0.00028 37.0 6.4 6 546-551 208-213 (215)
77 KOG2956 CLIP-associating prote 69.4 1.2E+02 0.0026 34.4 14.3 86 101-186 283-372 (516)
78 KOG2160 Armadillo/beta-catenin 68.1 1.5E+02 0.0033 32.2 14.5 105 12-117 105-221 (342)
79 PF14500 MMS19_N: Dos2-interac 67.9 67 0.0014 33.2 11.6 192 155-369 10-217 (262)
80 KOG1077 Vesicle coat complex A 67.9 1.8E+02 0.0039 34.7 15.7 32 36-67 153-184 (938)
81 PF01347 Vitellogenin_N: Lipop 67.5 31 0.00068 39.0 9.9 73 68-145 521-598 (618)
82 COG5181 HSH155 U2 snRNP splice 66.1 51 0.0011 38.5 10.9 260 68-351 604-907 (975)
83 PRK11634 ATP-dependent RNA hel 65.9 6.9 0.00015 45.2 4.3 55 47-110 83-140 (629)
84 KOG2567 Uncharacterized conser 64.5 4.6 9.9E-05 39.3 2.1 30 449-480 63-93 (179)
85 PF01347 Vitellogenin_N: Lipop 63.6 2.6E+02 0.0057 31.7 16.9 117 30-149 393-531 (618)
86 KOG3293 Small nuclear ribonucl 63.4 4.4 9.6E-05 37.5 1.8 16 459-474 53-68 (134)
87 KOG2137 Protein kinase [Signal 60.7 36 0.00078 39.9 8.7 209 117-364 285-500 (700)
88 KOG1077 Vesicle coat complex A 60.4 3.7E+02 0.008 32.3 17.5 98 61-165 322-425 (938)
89 PRK11634 ATP-dependent RNA hel 59.8 11 0.00023 43.7 4.4 28 451-478 503-532 (629)
90 PF12243 CTK3: CTD kinase subu 59.7 15 0.00032 34.8 4.6 71 29-118 5-75 (139)
91 KOG0213 Splicing factor 3b, su 59.4 1.3E+02 0.0027 36.2 12.6 244 69-351 800-1102(1172)
92 smart00582 RPR domain present 59.2 24 0.00051 31.4 5.7 36 84-119 11-46 (121)
93 PF04380 BMFP: Membrane fusoge 59.0 24 0.00053 30.1 5.4 38 181-218 24-61 (79)
94 PRK10590 ATP-dependent RNA hel 58.8 7.2 0.00016 42.8 2.7 14 294-307 279-292 (456)
95 TIGR00207 fliG flagellar motor 58.8 2.4E+02 0.0051 30.3 14.0 157 9-167 55-241 (338)
96 KOG0953 Mitochondrial RNA heli 58.7 17 0.00036 41.8 5.5 100 232-333 517-626 (700)
97 PF08064 UME: UME (NUC010) dom 57.7 32 0.0007 30.6 6.2 79 71-149 18-98 (107)
98 PF01465 GRIP: GRIP domain; I 57.6 14 0.00031 28.4 3.4 32 108-139 10-41 (46)
99 KOG3080 Nucleolar protein-like 57.4 58 0.0013 34.7 8.8 13 346-358 146-158 (328)
100 KOG4653 Uncharacterized conser 57.0 2.1E+02 0.0045 34.8 14.0 88 29-116 724-836 (982)
101 PRK10590 ATP-dependent RNA hel 56.9 15 0.00032 40.3 4.8 17 58-74 20-36 (456)
102 COG1413 FOG: HEAT repeat [Ener 56.7 27 0.00058 36.1 6.4 76 67-149 179-254 (335)
103 PF04286 DUF445: Protein of un 55.8 2.6E+02 0.0055 29.0 14.1 140 29-174 139-305 (367)
104 COG3280 TreY Maltooligosyl tre 55.7 2.1E+02 0.0045 34.5 13.5 155 210-414 432-597 (889)
105 KOG3172 Small nuclear ribonucl 55.3 12 0.00025 34.1 3.0 10 538-547 103-112 (119)
106 PF14225 MOR2-PAG1_C: Cell mor 54.7 97 0.0021 32.2 10.0 119 12-131 130-254 (262)
107 KOG0166 Karyopherin (importin) 54.5 1.4E+02 0.003 34.2 11.7 102 34-135 90-225 (514)
108 PF12530 DUF3730: Protein of u 54.4 1.4E+02 0.0029 30.2 10.8 64 76-139 9-72 (234)
109 KOG3428 Small nuclear ribonucl 54.1 6.8 0.00015 35.6 1.3 16 531-547 94-109 (109)
110 PF12719 Cnd3: Nuclear condens 54.1 1.9E+02 0.0042 29.9 12.2 138 32-170 26-182 (298)
111 PF00514 Arm: Armadillo/beta-c 53.6 8.9 0.00019 27.8 1.7 30 68-97 12-41 (41)
112 KOG4501 Transcription coactiva 53.2 9.1 0.0002 43.4 2.4 82 29-114 110-201 (707)
113 PF12830 Nipped-B_C: Sister ch 53.2 1.9E+02 0.0042 28.0 11.3 145 35-179 11-172 (187)
114 PF05327 RRN3: RNA polymerase 53.1 2.9E+02 0.0062 31.7 14.3 193 119-332 10-213 (563)
115 KOG2137 Protein kinase [Signal 51.8 75 0.0016 37.4 9.4 90 84-174 306-400 (700)
116 PF10363 DUF2435: Protein of u 50.8 54 0.0012 28.7 6.4 82 32-116 3-88 (92)
117 PTZ00034 40S ribosomal protein 50.3 10 0.00023 35.2 1.9 25 449-478 38-64 (124)
118 COG2960 Uncharacterized protei 50.1 66 0.0014 29.1 6.8 43 176-218 28-70 (103)
119 TIGR02270 conserved hypothetic 49.7 62 0.0013 35.7 8.1 102 29-146 114-216 (410)
120 KOG4413 26S proteasome regulat 48.8 3.1E+02 0.0067 30.2 12.6 239 14-279 63-340 (524)
121 PF07539 DRIM: Down-regulated 47.7 1.2E+02 0.0026 28.7 8.6 120 66-217 15-138 (141)
122 PF02985 HEAT: HEAT repeat; I 46.8 40 0.00086 23.2 4.0 28 107-134 2-29 (31)
123 KOG0212 Uncharacterized conser 46.2 1.8E+02 0.0039 33.8 11.0 213 16-241 189-427 (675)
124 KOG3758 Uncharacterized conser 45.9 2.9E+02 0.0064 32.3 12.6 171 157-358 398-582 (655)
125 COG1413 FOG: HEAT repeat [Ener 44.2 61 0.0013 33.5 6.7 75 66-149 72-147 (335)
126 COG5181 HSH155 U2 snRNP splice 43.5 6E+02 0.013 30.3 14.5 182 83-289 703-929 (975)
127 COG5240 SEC21 Vesicle coat com 43.4 1.8E+02 0.0038 34.1 10.3 117 50-169 283-408 (898)
128 KOG2025 Chromosome condensatio 43.1 1.3E+02 0.0028 35.8 9.4 108 33-144 86-198 (892)
129 KOG2479 Translation initiation 43.1 19 0.00041 40.0 2.8 12 533-544 141-152 (549)
130 PRK05686 fliG flagellar motor 43.0 3.3E+02 0.0072 29.0 12.1 156 10-167 59-244 (339)
131 PF07794 DUF1633: Protein of u 42.8 17 0.00037 41.0 2.4 14 527-540 456-469 (790)
132 PF11698 V-ATPase_H_C: V-ATPas 42.4 1.4E+02 0.0029 27.8 7.8 69 105-196 43-112 (119)
133 PF12235 FXR1P_C: Fragile X-re 42.3 11 0.00023 36.4 0.7 12 538-549 112-123 (155)
134 KOG1060 Vesicle coat complex A 42.1 3.6E+02 0.0077 32.7 12.7 68 77-144 401-468 (968)
135 KOG0166 Karyopherin (importin) 42.0 1E+02 0.0023 35.1 8.4 100 36-135 157-267 (514)
136 KOG2235 Uncharacterized conser 41.0 6.3E+02 0.014 29.9 14.2 119 229-361 605-735 (776)
137 KOG2025 Chromosome condensatio 40.3 1.9E+02 0.004 34.6 10.1 47 190-239 22-70 (892)
138 PTZ00034 40S ribosomal protein 39.9 19 0.00042 33.5 1.9 12 454-465 75-86 (124)
139 PF12530 DUF3730: Protein of u 39.3 3.4E+02 0.0075 27.3 11.0 142 6-149 13-169 (234)
140 PF03914 CBF: CBF/Mak21 family 39.0 1.9E+02 0.0042 27.2 8.7 73 257-331 21-96 (164)
141 PF12755 Vac14_Fab1_bd: Vacuol 38.6 87 0.0019 27.6 5.8 53 85-137 3-59 (97)
142 KOG1824 TATA-binding protein-i 38.2 3.2E+02 0.007 33.8 11.8 103 74-180 1013-1140(1233)
143 KOG1991 Nuclear transport rece 38.1 8.7E+02 0.019 30.2 15.3 213 104-357 480-708 (1010)
144 PF14631 FancD2: Fanconi anaem 37.8 76 0.0016 40.5 7.2 67 48-119 175-241 (1426)
145 KOG0213 Splicing factor 3b, su 36.8 8.7E+02 0.019 29.7 17.6 115 35-149 802-970 (1172)
146 COG1747 Uncharacterized N-term 36.8 3.7E+02 0.0081 31.2 11.5 119 183-319 564-688 (711)
147 PF11935 DUF3453: Domain of un 36.5 4.7E+02 0.01 26.5 11.7 22 76-97 1-22 (239)
148 PF12460 MMS19_C: RNAPII trans 36.0 6E+02 0.013 27.6 15.5 83 277-366 318-400 (415)
149 smart00185 ARM Armadillo/beta- 35.9 22 0.00047 24.8 1.3 28 69-96 13-40 (41)
150 KOG1943 Beta-tubulin folding c 35.4 1E+03 0.022 30.0 19.7 149 16-179 657-820 (1133)
151 COG5240 SEC21 Vesicle coat com 35.2 2.5E+02 0.0054 33.0 9.9 131 30-170 409-555 (898)
152 PF10193 Telomere_reg-2: Telom 35.1 70 0.0015 29.0 4.8 69 81-149 18-94 (114)
153 PF08360 TetR_C_5: QacR-like p 34.8 1.1E+02 0.0024 28.3 6.2 103 9-133 18-125 (131)
154 KOG1949 Uncharacterized conser 34.0 2.5E+02 0.0054 33.7 9.8 67 44-113 187-267 (1005)
155 KOG1058 Vesicle coat complex C 33.9 9.5E+02 0.021 29.3 15.6 63 53-116 228-290 (948)
156 PF15320 RAM: mRNA cap methyla 33.8 68 0.0015 27.8 4.2 6 471-476 30-35 (81)
157 PLN03134 glycine-rich RNA-bind 33.1 37 0.00081 31.8 2.8 9 470-478 104-112 (144)
158 KOG2956 CLIP-associating prote 33.0 2E+02 0.0042 32.8 8.6 82 68-149 329-416 (516)
159 PF13764 E3_UbLigase_R4: E3 ub 33.0 8.1E+02 0.018 29.8 14.2 183 141-333 119-328 (802)
160 KOG2202 U2 snRNP splicing fact 32.8 54 0.0012 34.2 4.0 18 536-553 242-259 (260)
161 PF11935 DUF3453: Domain of un 32.5 2.2E+02 0.0047 28.9 8.4 114 250-368 4-153 (239)
162 PF04826 Arm_2: Armadillo-like 32.1 2E+02 0.0043 29.7 8.1 66 62-129 67-158 (254)
163 KOG2032 Uncharacterized conser 31.6 2.6E+02 0.0057 32.0 9.3 141 161-314 234-374 (533)
164 KOG0211 Protein phosphatase 2A 31.2 2.1E+02 0.0045 34.3 9.0 80 53-135 220-306 (759)
165 KOG0105 Alternative splicing f 30.9 34 0.00075 34.3 2.2 7 456-462 23-29 (241)
166 COG1498 SIK1 Protein implicate 29.8 1.2E+02 0.0026 33.6 6.2 16 160-175 225-240 (395)
167 cd00159 RhoGAP RhoGAP: GTPase- 28.8 78 0.0017 29.0 4.1 66 50-115 54-122 (169)
168 PF03130 HEAT_PBS: PBS lyase H 28.3 75 0.0016 21.4 2.9 26 84-115 1-26 (27)
169 KOG1243 Protein kinase [Genera 28.3 4.9E+02 0.011 30.9 11.0 164 189-404 237-416 (690)
170 KOG0412 Golgi transport comple 28.2 2.5E+02 0.0055 33.4 8.7 28 32-66 195-223 (773)
171 PF02020 W2: eIF4-gamma/eIF5/e 28.0 1E+02 0.0023 26.0 4.5 41 85-125 4-44 (84)
172 KOG2945 Predicted RNA-binding 27.9 61 0.0013 35.4 3.6 10 544-553 161-170 (365)
173 KOG1525 Sister chromatid cohes 27.6 1.3E+03 0.028 29.7 15.0 125 45-176 199-332 (1266)
174 KOG1993 Nuclear transport rece 27.6 7.4E+02 0.016 30.3 12.3 128 63-196 521-663 (978)
175 PRK14507 putative bifunctional 26.8 1.6E+03 0.035 29.8 18.3 167 203-413 1205-1383(1693)
176 PF06861 BALF1: BALF1 protein; 26.8 2.9E+02 0.0063 27.4 7.6 88 187-290 55-151 (182)
177 PHA02713 hypothetical protein; 26.4 2.3E+02 0.0049 32.3 8.1 104 31-137 93-202 (557)
178 COG4912 Predicted DNA alkylati 26.1 4.9E+02 0.011 26.8 9.4 102 30-138 86-187 (222)
179 PF14664 RICTOR_N: Rapamycin-i 26.0 2.8E+02 0.0061 30.2 8.3 101 33-133 68-175 (371)
180 KOG2072 Translation initiation 25.7 7.2E+02 0.016 30.4 11.8 31 386-416 769-803 (988)
181 PF14631 FancD2: Fanconi anaem 25.2 4.9E+02 0.011 33.6 11.2 174 34-223 344-544 (1426)
182 PRK04537 ATP-dependent RNA hel 25.2 46 0.001 38.0 2.3 17 292-308 289-305 (572)
183 COG3945 Uncharacterized conser 24.9 1.9E+02 0.0041 28.9 6.1 62 232-295 21-82 (189)
184 PF14675 FANCI_S1: FANCI solen 24.8 5.9E+02 0.013 26.0 9.8 50 30-79 5-54 (223)
185 cd03562 CID CID (CTD-Interacti 24.8 1.5E+02 0.0033 26.0 5.1 38 85-122 17-54 (114)
186 smart00755 Grip golgin-97, Ran 24.8 1.1E+02 0.0023 23.8 3.5 31 108-139 9-39 (46)
187 KOG2062 26S proteasome regulat 24.8 7.9E+02 0.017 29.8 11.8 210 72-353 8-222 (929)
188 KOG0211 Protein phosphatase 2A 24.7 1.3E+03 0.028 27.9 15.3 266 31-331 357-645 (759)
189 KOG2135 Proteins containing th 24.7 73 0.0016 35.9 3.6 27 471-497 260-286 (526)
190 PF03715 Noc2: Noc2p family; 24.6 3.6E+02 0.0079 28.5 8.6 156 83-284 129-296 (299)
191 TIGR01648 hnRNP-R-Q heterogene 24.5 97 0.0021 35.8 4.7 10 470-479 297-306 (578)
192 PF06419 COG6: Conserved oligo 24.2 1.2E+03 0.025 27.2 14.9 36 259-294 463-498 (618)
193 PRK14511 maltooligosyl trehalo 23.9 1.4E+03 0.031 28.1 18.6 168 202-413 420-598 (879)
194 KOG1241 Karyopherin (importin) 23.9 1.4E+03 0.03 27.9 14.7 115 30-145 404-541 (859)
195 KOG2081 Nuclear transport regu 23.9 1.8E+02 0.0039 33.5 6.4 82 346-465 29-113 (559)
196 KOG1824 TATA-binding protein-i 23.2 1.6E+03 0.034 28.3 18.6 256 60-338 39-312 (1233)
197 TIGR01648 hnRNP-R-Q heterogene 22.9 53 0.0012 37.9 2.2 9 253-261 109-117 (578)
198 smart00567 EZ_HEAT E-Z type HE 22.7 79 0.0017 21.3 2.2 28 83-116 2-29 (30)
199 PRK07994 DNA polymerase III su 22.6 1.3E+03 0.027 27.4 13.2 115 50-170 162-291 (647)
200 cd00864 PI3Ka Phosphoinositide 22.4 2E+02 0.0042 27.4 5.6 73 32-116 39-113 (152)
201 smart00324 RhoGAP GTPase-activ 22.0 1.2E+02 0.0026 28.3 4.1 44 50-93 58-103 (174)
202 PRK13858 type IV secretion sys 21.9 1.2E+02 0.0027 29.1 4.1 82 371-467 23-105 (147)
203 PF12830 Nipped-B_C: Sister ch 21.5 2.7E+02 0.0059 27.0 6.6 68 71-138 11-78 (187)
204 PRK12678 transcription termina 21.5 72 0.0016 37.3 2.8 8 233-240 50-57 (672)
205 PF05084 GRA6: Granule antigen 21.3 85 0.0018 30.8 2.9 7 498-504 183-189 (215)
206 COG5215 KAP95 Karyopherin (imp 21.3 1.4E+03 0.031 27.1 13.8 92 11-113 429-542 (858)
207 PF11838 ERAP1_C: ERAP1-like C 20.9 8.8E+02 0.019 24.5 12.5 122 92-241 136-263 (324)
208 PF10136 SpecificRecomb: Site- 20.8 7.3E+02 0.016 29.3 10.7 99 208-317 6-115 (643)
209 PF06685 DUF1186: Protein of u 20.7 2.2E+02 0.0047 29.6 5.9 51 66-116 109-161 (249)
210 KOG2021 Nuclear mRNA export fa 20.6 1.6E+03 0.035 27.5 20.4 63 83-145 81-149 (980)
211 KOG0132 RNA polymerase II C-te 20.4 90 0.0019 37.2 3.3 11 212-222 278-288 (894)
212 KOG1020 Sister chromatid cohes 20.3 2.1E+03 0.045 28.6 15.0 101 67-170 815-918 (1692)
No 1
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=100.00 E-value=3.5e-162 Score=1312.66 Aligned_cols=534 Identities=56% Similarity=0.882 Sum_probs=353.4
Q ss_pred HHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHh
Q 008797 10 QIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAI 89 (553)
Q Consensus 10 ~ie~LY~~~~~L~~akdk~~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~ai 89 (553)
+||+||++||||++|+|+++|+++|++||+++||++++|+|||||||||||+||+|+++||||++|||||||++||+|||
T Consensus 1 ~ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai 80 (556)
T PF05918_consen 1 NIEKLYENYEILADAKDKSQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI 80 (556)
T ss_dssp -HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred CHHHHHHHHhHhhcCCCcccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 90 RGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 90 k~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
|+||.|||+||||++||||||+|||||||++|+++|++||++||++||++||++||+||.++ +++||.+|||+|+||+
T Consensus 81 k~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~--~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 81 KGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS--KSGDEQVRERALKFLR 158 (556)
T ss_dssp HHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HS-HHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--ccCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999853 4678999999999999
Q ss_pred hhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCC-CchhHHHHHHHHHHHhhhccccC
Q 008797 170 DKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEK-APTERMKELIGIIEGQADLDAQF 248 (553)
Q Consensus 170 ~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~-s~~gr~qeLv~~i~eqa~Ld~~f 248 (553)
+||++++.++++|++|+|++|+++||| +|+|||++||++||++|++|++|+.. ++.|| |+||++|.+||+||++|
T Consensus 159 ~kl~~l~~~~~~p~~E~e~~i~~~ikk---vL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~-qeLv~ii~eQa~Ld~~f 234 (556)
T PF05918_consen 159 EKLKPLKPELLTPQKEMEEFIVDEIKK---VLQDVTAEEFELFMSLLKSLKIYGGKQTIEGR-QELVDIIEEQADLDQPF 234 (556)
T ss_dssp HHGGGS-TTTS---HHHHHHHHHHHHH---HCTT--HHHHHHHHHHHHTSGG---GSSHHHH-HHHHHHHHHHHTTTS--
T ss_pred HHHhhCcHHHhhchHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHhCccccccCChHHH-HHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999 99999999999999999999998644 45555 99999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHH
Q 008797 249 NVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVL 328 (553)
Q Consensus 249 ~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~ 328 (553)
+++|+++|||+|+|+++|+|||+++++|++||+|||++|||+|++||++.|+++||+|||+||||++++++++||+||++
T Consensus 235 ~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~ 314 (556)
T PF05918_consen 235 DPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQL 314 (556)
T ss_dssp -SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHHHHHH
Q 008797 329 LKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRAT 408 (553)
Q Consensus 329 L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~y 408 (553)
|++|||.+.+ +|++||||||||||+||+||+|+|++++++||||+||||||||+|+|++++++|||+|||||++++|+|
T Consensus 315 L~~ymP~~~~-~~~l~fs~vEcLL~afh~La~k~p~~~~~lCgyk~vtgQpsd~~~~~~~~~~kdf~~RL~yl~~~~q~y 393 (556)
T PF05918_consen 315 LKKYMPSKKT-EPKLQFSYVECLLYAFHQLARKSPNSLNFLCGYKIVTGQPSDRYGEDDAEKLKDFRERLQYLARGTQAY 393 (556)
T ss_dssp HHTTS-----------HHHHHHHHHHHHHHHTT-THHHH---------------------TTTHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCC-CCcccchHhhHHHHHHHHHhhhCcchhhhHhhhcccccccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998764 899999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCccccccccccCCCCCC--
Q 008797 409 MKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPS-- 486 (553)
Q Consensus 409 ikkl~~~l~~~~K~~~~~k~ee~k~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pPsf~~~~~i~lSW~~~~k~~~~~-- 486 (553)
||+|+++|.+|+|+++++|+|+++.++++++|++++|||||+||++||++|||+||+|+++.+||+||++++++...+
T Consensus 394 ikkl~~~l~~~~k~~~~~k~~k~~~~lk~~~q~~~~aLkt~~NI~~lik~L~~~pPsf~~~~~itlSWk~~~~~~~~k~~ 473 (556)
T PF05918_consen 394 IKKLKQALSEHNKAMSAAKTDKTKAELKTEEQIKVTALKTTNNILALIKDLFHNPPSFKSTKNITLSWKEAKKPKLGKKH 473 (556)
T ss_dssp HHHHHHHH-----------TT--CCHHCSHHHHHHHHHHHHHHHHHHHCC----------------TTS-----------
T ss_pred HHHHHHHhhhhcccccccCCccchHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcccccccccceeeeeccchhhcccc
Confidence 999999999999999999999999999998999999999999999999999999999999656999999988743222
Q ss_pred ----------CCCCCCCCCCCcCCCCC-CcccccCCCCCCcchhhhhhhhcCCCCCC-----CCCCCCcccC-CCC--CC
Q 008797 487 ----------TTTASGGKRPASINGSG-NTASKKGRGSGGLQNQLVNRALEGISRGG-----RGGIRGRGRG-WGA--RG 547 (553)
Q Consensus 487 ----------~~~~~~gkr~~~~~g~~-~~~~~~gr~~~~~~~~~~~~~~~g~~~~~-----~~g~rgrgr~-~g~--~g 547 (553)
+.+..+|||++ ||.+ |...++||+++ +||+.++++..|.+++| |||+|||||| ||| ||
T Consensus 474 ~~~~~~~~~~~~~~~~~k~~~--~g~~~~~~~k~~~~~~-~~~~y~~p~~k~ss~~~~~~~~~g~gr~rg~~~ggg~grg 550 (556)
T PF05918_consen 474 QPITFRNNASQQANTGGKRPA--NGKSNNSPAKKGRQQN-MQQQYVPPSGKYSSNGGNSGRGRGGGRGRGRRSGGGRGRG 550 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccccccccccccccCCCc--CCCCCCcccccccchh-hccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCc
Confidence 23445688886 4433 44678899887 89999999999987444 4566666665 333 66
Q ss_pred CCCCCC
Q 008797 548 RGRGYR 553 (553)
Q Consensus 548 r~~~~~ 553 (553)
||||||
T Consensus 551 ~~r~~~ 556 (556)
T PF05918_consen 551 RGRGFW 556 (556)
T ss_dssp ------
T ss_pred ccccCC
Confidence 667999
No 2
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-117 Score=913.07 Aligned_cols=398 Identities=58% Similarity=0.863 Sum_probs=361.9
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHH
Q 008797 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQA 88 (553)
Q Consensus 9 ~~ie~LY~~~~~L~~akdk~~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~a 88 (553)
++||+||++||||++|+||+||+++|++||+++||+.|+||||||||||||||||+|+++|||||+|||||+|++||+||
T Consensus 2 ~~ie~ly~~~e~l~~a~dk~q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qa 81 (460)
T KOG2213|consen 2 DNIEKLYEFYEILSEATDKSQHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQA 81 (460)
T ss_pred chHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008797 89 IRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 89 ik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl 168 (553)
||+||.||++ +.++||+|||+|||+ +++|++||.||. .+||++|||+++||
T Consensus 82 ik~lp~fc~~--d~~~rv~d~l~qLLn----------------------k~sl~~Lf~~~~-----~~D~~irek~l~fi 132 (460)
T KOG2213|consen 82 IKGLPLFCKG--DALSRVNDVLVQLLN----------------------KASLTGLFGQIE-----VGDEQIREKVLKFI 132 (460)
T ss_pred HhccchhccC--chhhhhHHHHHHHHH----------------------HHHHHHHHhhhh-----hhhHHHHHHHHHHH
Confidence 9999999999 899999999999999 899999999998 57999999999999
Q ss_pred HhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccC
Q 008797 169 RDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQF 248 (553)
Q Consensus 169 ~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f 248 (553)
++|+++++.|++ ++|+|++|+++||| +|+|||++||.+||++|++|+++|+++|+.|+|+|+++++++|+||. |
T Consensus 133 ~tKl~~l~~e~L--~kevE~~iv~eikk---al~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~lda-f 206 (460)
T KOG2213|consen 133 RTKLITLKGEVL--TKEVERHIVDEIKK---ALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDA-F 206 (460)
T ss_pred HHHhhcccHHHh--hhHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCc-c
Confidence 999999999999 58999999999999 99999999999999999999999999999999999999999999999 9
Q ss_pred CCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccC-CCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHH
Q 008797 249 NVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPV-FDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAV 327 (553)
Q Consensus 249 ~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~-l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~ 327 (553)
++||+|+|||||+|+.+|+|||++|++||+||.|+|++|+|+ |+.+++++||++||+|||||+||+.+.|+++||+||+
T Consensus 207 ~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~e 286 (460)
T KOG2213|consen 207 NVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAARQMLPSIVE 286 (460)
T ss_pred cCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHHHHH
Q 008797 328 LLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRA 407 (553)
Q Consensus 328 ~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~ 407 (553)
+|++|||.|.+ .|+++|||||||||+||+||||.|+|++..||||+++|| |++|++|+.|.
T Consensus 287 lLk~yMpa~kt-~ee~~fsyvEClly~~h~Lg~k~pn~t~ak~d~K~L~~~------------------~ad~l~r~fq~ 347 (460)
T KOG2213|consen 287 LLKEYMPAPKT-GEEMQFSYVECLLYALHHLGHKKPNFTNAKCDAKKLKDF------------------RADYLARGFQE 347 (460)
T ss_pred HHHHhcccCCc-cHHHHHHHHHHHHHHHHHHhhcCcchhhhhcchhhhccc------------------hHHHHhhhhHH
Confidence 99999999987 899999999999999999999999999999998888855 45555555566
Q ss_pred HHHHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCCcccccccccc
Q 008797 408 TMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEAT 480 (553)
Q Consensus 408 yikkl~~~l~~~~K~~~~~k~ee~k~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pPsf~~~~~i~lSW~~~~ 480 (553)
||| |..++++++|+++|. +++++++||+.+++++++.||.|+. .+++||..+.
T Consensus 348 y~K----------~t~E~L~t~edqiKa--------t~~klT~~is~l~Kal~~~k~~~e~--~~~Li~~l~Q 400 (460)
T KOG2213|consen 348 YIK----------KTGEALKTEEDQIKA--------TALKLTQNISELIKALFHAKPDPEE--EKQLIWTLVQ 400 (460)
T ss_pred HHH----------HHHHHHHHHHHHHHH--------hhhhhhccHHHHHhhHhcCCCchhH--HHHHHHHHHH
Confidence 655 223334455555443 5556666666666666666666654 5555555543
No 3
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=1.8e-09 Score=113.93 Aligned_cols=305 Identities=24% Similarity=0.271 Sum_probs=182.1
Q ss_pred cccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhh
Q 008797 92 LPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDK 171 (553)
Q Consensus 92 Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~k 171 (553)
.-..||.-|...+|+.+++..+|. .+.|..+|...-++|-+.+-. .++.+++++.+....++
T Consensus 122 ~~irek~l~fi~tKl~~l~~e~L~--kevE~~iv~eikkal~dVtge-ef~lfm~~L~~lk~~~~--------------- 183 (460)
T KOG2213|consen 122 EQIREKVLKFIRTKLITLKGEVLT--KEVERHIVDEIKKALEDVTGE-EFTLFMDILASLKSLQT--------------- 183 (460)
T ss_pred HHHHHHHHHHHHHHhhcccHHHhh--hHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHhhhcccC---------------
Confidence 334577777778999999999999 889999999998888888755 77777777653211110
Q ss_pred cccchhhhcCChHHHHHHHHHHHHHH-hhhcccccHHHH-HHHHHHH-hhccccCCCCchhHHHHHHHHHHHhhhccccC
Q 008797 172 VFPLKAELLKPQEEMERHITDLIKKV-LQSLEDVTGAEF-RMFMDFL-KSLSLFGEKAPTERMKELIGIIEGQADLDAQF 248 (553)
Q Consensus 172 l~~l~~e~l~~~eE~E~~i~~~ikK~-~~vL~dVT~eEF-~l~m~lL-~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f 248 (553)
..+.+++.+.+...=.++ ++. =+++-.+- +.|++.+ ..+|.|..-.|+-| .++++-++.=.. .|
T Consensus 184 --------k~~~a~lqeLa~~~e~~a~lda-f~~sD~d~VdRfisCl~~AvPfFargapSsk---f~~y~n~~~ip~-~f 250 (460)
T KOG2213|consen 184 --------KAGEARLQELAEEQEGLADLDA-FNVSDADYVDRFISCLLMAVPFFARGAPSSK---FVEYLNKHIIPH-HF 250 (460)
T ss_pred --------CCCHHHHHHHHHHHhhhhccCc-ccCCChHHHHHHHHHHHHhhhhhhcCCchhH---HHHHHHhhhccc-cc
Confidence 011223333222211111 221 11211111 2233322 23455544344422 444444432111 23
Q ss_pred CCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchh--hhhhhHHHH
Q 008797 249 NVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQD--SRQILPSVA 326 (553)
Q Consensus 249 ~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~--a~~~l~~i~ 326 (553)
+.+ .-+|=+..++- +.=+|+.-... -..+.||. =.++||..+.+.-+|..+. .-+|+-+++
T Consensus 251 dkl---~e~rkL~lLK~-lAEMss~ttaq-----~a~q~Lps--------i~elLk~yMpa~kt~ee~~fsyvEClly~~ 313 (460)
T KOG2213|consen 251 DKL---TEERKLDLLKA-LAEMSSYTTAQ-----AARQMLPS--------IVELLKEYMPAPKTGEEMQFSYVECLLYAL 313 (460)
T ss_pred ccc---hHHHHHHHHHH-HHHhCccchHH-----HHHHHHHH--------HHHHHHHhcccCCccHHHHHHHHHHHHHHH
Confidence 222 11222222211 11111111110 01233332 2366777777777776554 667889999
Q ss_pred HHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHHHH
Q 008797 327 VLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTR 406 (553)
Q Consensus 327 ~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q 406 (553)
..|....|.-.. +-++ +++-.+|=.. .++++|....|+|..+|.-.+...+
T Consensus 314 h~Lg~k~pn~t~-------ak~d---------~K~L~~~~ad-------------~l~r~fq~y~K~t~E~L~t~edqiK 364 (460)
T KOG2213|consen 314 HHLGHKKPNFTN-------AKCD---------AKKLKDFRAD-------------YLARGFQEYIKKTGEALKTEEDQIK 364 (460)
T ss_pred HHHhhcCcchhh-------hhcc---------hhhhccchHH-------------HHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999988875221 1111 1223332122 1445788999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhHhhcCCh--HHHHHHHhhhccchhhhhhhccHHHHhhh--hhcCCCCccCCCccccc
Q 008797 407 ATMKKLTQGLADHNKEMAAAKTD--EAKEKIKTQKQNTTTGLRTCNNILAMSKP--LHSKTPSFIGDKSVNLS 475 (553)
Q Consensus 407 ~yikkl~~~l~~~~K~~~~~k~e--e~k~k~~~~~q~~~~aL~~~~NI~~li~~--L~~~pPsf~~~~~i~lS 475 (553)
++..++++.|+.|.|.+...|++ +.+.-+....|..++++++|+|++.++.. +++..|+|++ .-+.|
T Consensus 365 at~~klT~~is~l~Kal~~~k~~~e~~~~Li~~l~Q~~aiG~r~a~~~La~t~~~~~~~~s~~~~~--~a~~s 435 (460)
T KOG2213|consen 365 ATALKLTQNISELIKALFHAKPDPEEEKQLIWTLVQNTTIGLRTANNILAMTKGFCFHHKSRSPMG--HARRS 435 (460)
T ss_pred HhhhhhhccHHHHHhhHhcCCCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcccCCCCChhhhh--ccCcc
Confidence 99999999999999999999999 45555566789999999999999999976 8999999987 44444
No 4
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.81 E-value=3.7e-06 Score=93.64 Aligned_cols=378 Identities=15% Similarity=0.212 Sum_probs=171.2
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008797 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (553)
Q Consensus 30 ~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaD 108 (553)
.++++-.++|... -+..+.+=|=.-||.+.|+=|++-..-.|.+.-|.--||+.-+..+=+.|..+-+-+|. .-+..
T Consensus 57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--~tL~~ 134 (556)
T PF05918_consen 57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--GTLTG 134 (556)
T ss_dssp HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--HHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--HHHHH
Confidence 5667889999999 77889999999999999999999999999999999988888888888888888887752 33788
Q ss_pred HHHHHHh--hchhHHHHHHHHHHHHHHcc----------chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh-hcc--
Q 008797 109 ILVQLLA--AEEIVERDAVHKALMSLLRQ----------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD-KVF-- 173 (553)
Q Consensus 109 VL~QLLq--sdd~~E~~~v~~aL~sllk~----------D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~-kl~-- 173 (553)
++.|++. +.|..-++-+=+-|..-+.. +...-+...+..+..+ -.++|- +-++.||+. +++
T Consensus 135 lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D--VTaeEF--~l~m~lL~~lk~~~~ 210 (556)
T PF05918_consen 135 LFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD--VTAEEF--ELFMSLLKSLKIYGG 210 (556)
T ss_dssp HHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT----HHHH--HHHHHHHHTSGG---
T ss_pred HHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh--ccHHHH--HHHHHHHHhCccccc
Confidence 8899983 22223333333333333332 2333333333433310 011111 233444443 331
Q ss_pred -cchhhhcCChHHHHHHHHHHHHHHhhhccccc-HHHHHHHHHHHh-hccccCCCCchhHHHHHHHHHHHhhhccccCCC
Q 008797 174 -PLKAELLKPQEEMERHITDLIKKVLQSLEDVT-GAEFRMFMDFLK-SLSLFGEKAPTERMKELIGIIEGQADLDAQFNV 250 (553)
Q Consensus 174 -~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT-~eEF~l~m~lL~-sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~ 250 (553)
..... ..|+-+.|.++.. |+.--+++ .+-++.|+..+. .+|.|.. .+ +-.+++.++.++. |. .|+.
T Consensus 211 ~~t~~g----~qeLv~ii~eQa~--Ld~~f~~sD~e~Idrli~C~~~Alp~fs~-~v--~Sskfv~y~~~kv-lP-~l~~ 279 (556)
T PF05918_consen 211 KQTIEG----RQELVDIIEEQAD--LDQPFDPSDPESIDRLISCLRQALPFFSR-GV--SSSKFVNYMCEKV-LP-KLSD 279 (556)
T ss_dssp GSSHHH----HHHHHHHHHHHHT--TTS---SSSHHHHHHHHHHHHHHGGG-BT-TB----HHHHHHHHHHT-CC-CTT-
T ss_pred cCChHH----HHHHHHHHHHHhc--cCCCCCCcCHHHHHHHHHHHHHhhHHhcC-CC--ChHHHHHHHHHHh-cC-Chhh
Confidence 11111 1233333333221 11111222 333444555443 4677753 22 2367999998861 11 2222
Q ss_pred CChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhh---ccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHH
Q 008797 251 SDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHI---IPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAV 327 (553)
Q Consensus 251 sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~I---lP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~ 327 (553)
.+.+.==+++..+-.+.||..... +..++..+-+.+ +|.=.. .++.++. --+++-..|.
T Consensus 280 l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~-~~~l~fs----------------~vEcLL~afh 341 (556)
T PF05918_consen 280 LPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKT-EPKLQFS----------------YVECLLYAFH 341 (556)
T ss_dssp ----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS-----------HH----------------HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCC-CCcccch----------------HhhHHHHHHH
Confidence 222322356777777788877555 677776665544 451110 0111111 1234444555
Q ss_pred HHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHHHHH
Q 008797 328 LLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRA 407 (553)
Q Consensus 328 ~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~ 407 (553)
.|...-|. ++.-.|....-|- -|..... . .-++.+. ||-.||.=|-..+|---..+..
T Consensus 342 ~La~k~p~---------~~~~lCgyk~vtg----Qpsd~~~-------~-~~~~~~k-df~~RL~yl~~~~q~yikkl~~ 399 (556)
T PF05918_consen 342 QLARKSPN---------SLNFLCGYKIVTG----QPSDRYG-------E-DDAEKLK-DFRERLQYLARGTQAYIKKLKQ 399 (556)
T ss_dssp HHHTT-TH---------HHH---------------------------------TTTH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhCcc---------hhhhHhhhccccc----ccccccc-------c-ccHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55555542 2222232222111 2222210 0 1123344 8899999998888877777777
Q ss_pred HH----HHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcC---CCCccC
Q 008797 408 TM----KKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSK---TPSFIG 468 (553)
Q Consensus 408 yi----kkl~~~l~~~~K~~~~~k~ee~k~k~~~~~q~~~~aL~~~~NI~~li~~L~~~---pPsf~~ 468 (553)
.+ |++..+.++ |..+++|+|+ |.++..- .-+.+-+.++.++.+=--.+..+ .|||+.
T Consensus 400 ~l~~~~k~~~~~k~~--k~~~~lk~~~-q~~~~aL-kt~~NI~~lik~L~~~pPsf~~~~~itlSWk~ 463 (556)
T PF05918_consen 400 ALSEHNKAMSAAKTD--KTKAELKTEE-QIKVTAL-KTTNNILALIKDLFHNPPSFKSTKNITLSWKE 463 (556)
T ss_dssp HH-----------TT----CCHHCSHH-HHHHHHH-HHHHHHHHHHCC----------------TTS-
T ss_pred HhhhhcccccccCCc--cchHHHHHHH-HHHHHHH-HHHhhHHHHHHHHhhCCcccccccccceeeee
Confidence 77 666666677 7778889988 7664321 11223444454444433333332 467775
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.82 E-value=0.0019 Score=70.20 Aligned_cols=127 Identities=16% Similarity=0.262 Sum_probs=97.1
Q ss_pred HhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-HHHHHHHHHhhch
Q 008797 40 AAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-IVDILVQLLAAEE 118 (553)
Q Consensus 40 ~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r-iaDVL~QLLqsdd 118 (553)
....++-.+-+|=.+++..- -|++.+.-+..+..+..|.++-||+.|+-.+..+++..|+.+.. +.+.|.++|.+.+
T Consensus 88 l~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~ 165 (526)
T PF01602_consen 88 LNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKD 165 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSS
T ss_pred hcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCc
Confidence 33466778888888888865 78888888889999999999999999999999999999999888 7999999998888
Q ss_pred hHHHHHHHHHHHHHHccchHH---HHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 119 IVERDAVHKALMSLLRQDVKA---SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 119 ~~E~~~v~~aL~sllk~D~k~---tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
+..+..+-.+|..+ +.++.. .+..++..+... -+..++-++..++++|..
T Consensus 166 ~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~-l~~~~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 166 PSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQL-LSDPDPWLQIKILRLLRR 218 (526)
T ss_dssp HHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHH-HTCCSHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhc-ccccchHHHHHHHHHHHh
Confidence 87777777777777 555554 455555554310 014566778888888774
No 6
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.81 E-value=0.014 Score=65.00 Aligned_cols=341 Identities=18% Similarity=0.226 Sum_probs=190.6
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHH-Hh-cCCHHHHHHHhhhhhHHhccCCC-----cchHHHHHhhhhhcccc
Q 008797 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIE-AA-KTSLKAKQLAAQLIPRFFKFFPD-----LSSRAVDAHLDLIEEEE 81 (553)
Q Consensus 9 ~~ie~LY~~~~~L~~akdk~~~~~~y~~Il~-~~-kgs~k~K~LAaqfI~kffk~FP~-----L~e~Ai~a~lDLcEDed 81 (553)
+.|+..=+..+++-++.+-..-...|...|. +. +.++.+|+||..-|.+...+-.. ...+-+..++++..|+|
T Consensus 53 e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc
Confidence 3344333333444343332222445555444 44 48899999999999999887665 44667788899999999
Q ss_pred hhHHHHHhhccccccccCcchhhhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHccchHH--HH--HHHHHhhccCC
Q 008797 82 LGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVKA--SL--TALFKHIGSVD 152 (553)
Q Consensus 82 ~~IR~~aik~Lp~lck~~~e~~~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~--tL--~~lf~qI~~~~ 152 (553)
..|-..|++.|-.+|+.. ..+..+ ...|.+++...+...+--|...++.+.+..+.. .. +|+|+.+..
T Consensus 133 ~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~-- 209 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLK-- 209 (503)
T ss_pred HHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHH--
Confidence 999999999999999864 555555 778899999977788888999999998885432 11 235666552
Q ss_pred CCC-ChHHHHHHHHHHHHhhcc-cchhhhcCChHHHHHHHHHHHHHHhhhcccccHHH-HH-----HHHHHHhhccccCC
Q 008797 153 EPS-TDEFIREKVLSFIRDKVF-PLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAE-FR-----MFMDFLKSLSLFGE 224 (553)
Q Consensus 153 e~~-~eE~vREr~lkFl~~kl~-~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eE-F~-----l~m~lL~sl~~~~~ 224 (553)
+-. +|-.++.-++..|.+=.. +-...++ .+.-|++.|-. .+.+.+.+. +. -+|.+...+-.++.
T Consensus 210 eL~~dDiLvqlnalell~~La~~~~g~~yL-----~~~gi~~~L~~---~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~ 281 (503)
T PF10508_consen 210 ELDSDDILVQLNALELLSELAETPHGLQYL-----EQQGIFDKLSN---LLQDSEEDPRLSSLLLPGRMKFFGNLARVSP 281 (503)
T ss_pred HhcCccHHHHHHHHHHHHHHHcChhHHHHH-----HhCCHHHHHHH---HHhccccCCcccchhhhhHHHHHHHHHhcCh
Confidence 223 444579999987765222 1122222 12223333333 555555444 32 23444444444321
Q ss_pred CCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHH--------HHHhhhccCCCCCCh
Q 008797 225 KAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLN--------YLNKHIIPVFDKLPE 296 (553)
Q Consensus 225 ~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~--------y~~~~IlP~l~~l~~ 296 (553)
....++...++..+. ..++..|+....-.+. ++-.+...+.+-.++. -+.+.+.-.....+.
T Consensus 282 ~~v~~~~p~~~~~l~------~~~~s~d~~~~~~A~d----tlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 282 QEVLELYPAFLERLF------SMLESQDPTIREVAFD----TLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHHHHHHHHHHHHH------HHhCCCChhHHHHHHH----HHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 111111122232222 3344556654443333 5555655555555551 122233333444466
Q ss_pred hhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCCCCCC-----CCccchHHHHHHHHHHHHhhhcCchhhhhccC
Q 008797 297 ERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTG-----GEEMNFTYVECLLYTFHHLAHKAPNATNSLCG 371 (553)
Q Consensus 297 ~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~-----~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg 371 (553)
+.|++.|..|+.+-...+.....+++ .+-+...+.+...|.. --+=.|..+-|--|.|=+-.-.+|-....+|.
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~~i~-~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~ 430 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDNDIL-SITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICS 430 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHH-HHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 88999999999995443332222222 3333333444433321 12235667777666654444444444444443
No 7
>PTZ00429 beta-adaptin; Provisional
Probab=97.63 E-value=0.027 Score=65.72 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=89.4
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH
Q 008797 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (553)
Q Consensus 34 y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~Q 112 (553)
|-.++..+. .+...|+|.--++-.|.+.-|++.--|+|++..=|.|.++.||--|||-|..|.. |+.+.-+..-+.+
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l~~~lkk 147 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYTLEPLRR 147 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHHHHHHHH
Confidence 444444444 6788999999999999999999999999999988999999999999999988775 5778888888899
Q ss_pred HHhhchhHHHHHHHHHHHHHHccchH
Q 008797 113 LLAAEEIVERDAVHKALMSLLRQDVK 138 (553)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D~k 138 (553)
+|...+|-++..+=-++..+++.+|.
T Consensus 148 ~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 148 AVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 99999999999888899999988874
No 8
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.58 E-value=0.002 Score=61.80 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=100.7
Q ss_pred HHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-HHHHHHHHHhhchhHHHHH
Q 008797 46 KAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-IVDILVQLLAAEEIVERDA 124 (553)
Q Consensus 46 k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r-iaDVL~QLLqsdd~~E~~~ 124 (553)
..+.-+--.+.-.-..||++-|.-+..+++...|+++.||++|+.-|-.+-..+.--+.- +-.-++.+|..+++..+..
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 344445555666778899999999999999999999999999999999988764322222 3133445888899999999
Q ss_pred HHHHHHHHHcc-chHHHH---HHHHHhhccCCC-C---CChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHH
Q 008797 125 VHKALMSLLRQ-DVKASL---TALFKHIGSVDE-P---STDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKK 196 (553)
Q Consensus 125 v~~aL~sllk~-D~k~tL---~~lf~qI~~~~e-~---~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK 196 (553)
++..|.++... +|.... -.+++++....+ + ..++.-|.++++||-..|.. .+..+..+..++.+
T Consensus 83 A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--------d~~~~~l~~kl~~~ 154 (178)
T PF12717_consen 83 ARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--------DKQKESLVEKLCQR 154 (178)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHH
Confidence 99999999998 665433 333344432221 1 24456789999999877753 23445555555555
No 9
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.44 E-value=0.012 Score=48.63 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=53.7
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHH-
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVE- 121 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E- 121 (553)
.++..+.-|+..+.++- ..+++..++.++.|+|+.||.+|+..|-.+- -++..+.|.++|++++...
T Consensus 12 ~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~~l~~~~~~~v 79 (88)
T PF13646_consen 12 PDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIKLLQDDDDEVV 79 (88)
T ss_dssp SSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHHHHTC-SSHHH
T ss_pred CCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHHHHcCCCcHHH
Confidence 66778888888777442 3478888888888888888988888888874 2468888888888865432
Q ss_pred HHHHHHHH
Q 008797 122 RDAVHKAL 129 (553)
Q Consensus 122 ~~~v~~aL 129 (553)
+..+-.||
T Consensus 80 r~~a~~aL 87 (88)
T PF13646_consen 80 REAAAEAL 87 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 44444443
No 10
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.38 E-value=0.039 Score=52.94 Aligned_cols=126 Identities=21% Similarity=0.291 Sum_probs=92.2
Q ss_pred chhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccch---HHHH-HHHHHhhccCCCCCC
Q 008797 81 ELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV---KASL-TALFKHIGSVDEPST 156 (553)
Q Consensus 81 d~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~---k~tL-~~lf~qI~~~~e~~~ 156 (553)
|+.||..++-.+.++|.-.|..+....+-|..+|.++++..+..+=..|..|+..|. ++.+ ..++.-+. .+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~-----D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLV-----DE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHc-----CC
Confidence 578999999999999999999999999999999999999999999999999988864 5555 55666554 55
Q ss_pred hHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcc-----cccHHHHHHHHHHHh
Q 008797 157 DEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLE-----DVTGAEFRMFMDFLK 217 (553)
Q Consensus 157 eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~-----dVT~eEF~l~m~lL~ 217 (553)
++.+|.-+..|+.+-.....++. .-.++.+.|-.+-+..+ .++.++|..+|.++-
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~------i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll 135 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNI------IYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLL 135 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchH------HHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHH
Confidence 67899999999887554432222 23444444443111111 466777777777663
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.36 E-value=0.2 Score=54.67 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=108.3
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHH
Q 008797 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (553)
Q Consensus 32 ~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL 110 (553)
..|-.++.... .+...|||+==++..|+..=|++.--++|++..=+.++++.||--|++.|..+| +|+.+.-+.+.+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v 119 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDV 119 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHH
Confidence 45666777655 778999999999999999999999999999999899999999999999999999 789999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHccchHHH---HHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 111 VQLLAAEEIVERDAVHKALMSLLRQDVKAS---LTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 111 ~QLLqsdd~~E~~~v~~aL~sllk~D~k~t---L~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
.++|.+.++..+..+=-++..+++.+|... +...+.++.. +.+..|+.-++..+..
T Consensus 120 ~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~----d~~~~V~~~a~~~l~~ 178 (526)
T PF01602_consen 120 IKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLS----DKDPSVVSAALSLLSE 178 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTT----HSSHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhcc----CCcchhHHHHHHHHHH
Confidence 999999999888888889999998877642 2333344431 3334677777776653
No 12
>PRK09687 putative lyase; Provisional
Probab=96.32 E-value=0.17 Score=52.36 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=94.4
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhh-hcccchhHHHHHhhccccccccCcchhhhHH
Q 008797 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (553)
Q Consensus 30 ~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDL-cEDed~~IR~~aik~Lp~lck~~~e~~~ria 107 (553)
..+.+..+..+.+ .++.+.+.|+.-+..+ ++=+.-+.+++..+..+ .+|+|..||..|+..|-.+|...+.+.++..
T Consensus 52 ~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~ 130 (280)
T PRK09687 52 GQDVFRLAIELCSSKNPIERDIGADILSQL-GMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIV 130 (280)
T ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHH
Confidence 4456666777666 6778888888777774 43222357889988888 8999999999999999999998888888888
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008797 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl 168 (553)
..|..++.++++..+-.+=.||-. +.....+..|+.-+. ..+..||..++.-|
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg~---~~~~~ai~~L~~~L~-----d~~~~VR~~A~~aL 183 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALSV---INDEAAIPLLINLLK-----DPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhc-----CCCHHHHHHHHHHH
Confidence 888888888888887777777643 333455666666554 34445777666543
No 13
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.23 E-value=0.35 Score=59.57 Aligned_cols=105 Identities=26% Similarity=0.365 Sum_probs=85.9
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008797 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (553)
Q Consensus 30 ~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaD 108 (553)
|.+--.++..-.- .+..++.=|=-++.||.-..|++..+=.+.+..=+-|..+.||+-|||=|-++|-++|+ .+++.|
T Consensus 853 ~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-f~~i~~ 931 (1692)
T KOG1020|consen 853 RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD-FSKIVD 931 (1692)
T ss_pred CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-hhhHHH
Confidence 3333333433333 56788888999999999999999999999999999999999999999999999999987 678999
Q ss_pred HHHHHHhh---chhHHHHHHHHHHHHHHcc
Q 008797 109 ILVQLLAA---EEIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 109 VL~QLLqs---dd~~E~~~v~~aL~sllk~ 135 (553)
+.+.+|-- ||..--..|...+..++=.
T Consensus 932 ~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 932 MCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 99999864 4444778888888888744
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.20 E-value=0.017 Score=49.32 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=70.5
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHccchH---
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--- 138 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--- 138 (553)
...+..+++++.|.+..+|..|+..|-.+|..+|++... +.+.|.++|.++++.-+..+-.+|.+|....+.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 346788889999999999999999999999987766443 667899999998888888888888888766532
Q ss_pred -----HHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 139 -----ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 139 -----~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+.+..+...+. .++..+|+.++.+|.
T Consensus 86 ~~~~~g~l~~l~~~l~-----~~~~~~~~~a~~~l~ 116 (120)
T cd00020 86 IVLEAGGVPKLVNLLD-----SSNEDIQKNATGALS 116 (120)
T ss_pred HHHHCCChHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 23444444443 334456666655543
No 15
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.18 E-value=0.018 Score=50.30 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=75.2
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCc---chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHH
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP---EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTA 143 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~---e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~ 143 (553)
.++++..+..+.|..+.||..|+..|-.+.+... ..+++|.+++.+.|..+|+=..-.+=++|.+|...+|..++..
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 4667777888899999999999999999998876 6788999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 008797 144 LFKHIG 149 (553)
Q Consensus 144 lf~qI~ 149 (553)
|+..-.
T Consensus 82 L~~~y~ 87 (92)
T PF10363_consen 82 LLDEYA 87 (92)
T ss_pred HHHHHh
Confidence 988765
No 16
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.89 E-value=0.032 Score=46.00 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=62.4
Q ss_pred HHHhhhhh-cccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhh
Q 008797 70 VDAHLDLI-EEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (553)
Q Consensus 70 i~a~lDLc-EDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI 148 (553)
|+.+++++ +|+++.||..|++.|-.+.. +++.+.|.++|+++++..+..+-.+|- .+.....+..|...+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~---~i~~~~~~~~L~~~l 71 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKDEDPMVRRAAARALG---RIGDPEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTSSSHHHHHHHHHHHH---CCHHHHTHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Confidence 56788988 99999999999999997753 478999999998888876666555555 555666777777766
Q ss_pred ccCCCCCChHHHHHHHHH
Q 008797 149 GSVDEPSTDEFIREKVLS 166 (553)
Q Consensus 149 ~~~~e~~~eE~vREr~lk 166 (553)
.+ +.+..+|+-++.
T Consensus 72 ~~----~~~~~vr~~a~~ 85 (88)
T PF13646_consen 72 QD----DDDEVVREAAAE 85 (88)
T ss_dssp TC-----SSHHHHHHHHH
T ss_pred cC----CCcHHHHHHHHh
Confidence 52 234567877664
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=95.87 E-value=1.2 Score=52.32 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=72.5
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHH--HHHhhhhhcccchhHHHHHhhccccccccCcch-------hhhHHHHH---
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSSRA--VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-------LSKIVDIL--- 110 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e~A--i~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~-------~~riaDVL--- 110 (553)
.++-+++=||--|.|.|+.+|++-+++ ++.+.+|..|.|+.|...|+..|-.+|..+|+. +.++...|
T Consensus 152 ~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~ 231 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPEC 231 (746)
T ss_pred CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcC
Confidence 778999999999999999999996544 888999999999999999999999998776432 33332222
Q ss_pred --------HHHHhh---chhHHHHHHHHHHHHHHcc-chHHHHHHH
Q 008797 111 --------VQLLAA---EEIVERDAVHKALMSLLRQ-DVKASLTAL 144 (553)
Q Consensus 111 --------~QLLqs---dd~~E~~~v~~aL~sllk~-D~k~tL~~l 144 (553)
..+|.. ++..|...+=+.+...|++ ++.++|+++
T Consensus 232 ~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Ai 277 (746)
T PTZ00429 232 NEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAI 277 (746)
T ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 122222 3345555555556665554 677776654
No 18
>PRK09687 putative lyase; Provisional
Probab=95.76 E-value=0.12 Score=53.52 Aligned_cols=126 Identities=17% Similarity=0.082 Sum_probs=99.6
Q ss_pred hhHHHHHHH-hc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008797 32 KDYEGIIEA-AK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (553)
Q Consensus 32 ~~y~~Il~~-~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDV 109 (553)
+.+..+... .+ .++.+..-|+.-+..+-..-+....+|++.+.-+..|++..||..|+.+|..+.- ....+.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------~~ai~~ 163 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------EAAIPL 163 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------HHHHHH
Confidence 455555554 34 6788898999999888777777778899988888999999999999999987752 368899
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
|.++|..+++..+..+-.+|-.+ ..+...+...|..-+. ..++.||..++.-|.
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~-~~~~~~~~~~L~~~L~-----D~~~~VR~~A~~aLg 217 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSN-KYDNPDIREAFVAMLQ-----DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhc-----CCChHHHHHHHHHHH
Confidence 99999999998777777777776 5456677777777775 667789999887664
No 19
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.40 E-value=1.3 Score=47.50 Aligned_cols=26 Identities=69% Similarity=1.182 Sum_probs=16.7
Q ss_pred CCCCCCCC---CCCCcccCCCCCCCCCCC
Q 008797 527 GISRGGRG---GIRGRGRGWGARGRGRGY 552 (553)
Q Consensus 527 g~~~~~~~---g~rgrgr~~g~~gr~~~~ 552 (553)
|-+|||++ |+||+|||.||||.|+||
T Consensus 356 gg~Rgg~Gg~~gGrGgGRGggG~GGGggy 384 (465)
T KOG3973|consen 356 GGSRGGSGGNWGGRGGGRGGGGRGGGGGY 384 (465)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 44565544 466666666677777786
No 20
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.30 E-value=5.2 Score=43.08 Aligned_cols=8 Identities=25% Similarity=0.621 Sum_probs=5.3
Q ss_pred cccccccc
Q 008797 473 NLSWKEAT 480 (553)
Q Consensus 473 ~lSW~~~~ 480 (553)
.+||.+-.
T Consensus 319 mpswqqqq 326 (465)
T KOG3973|consen 319 MPSWQQQQ 326 (465)
T ss_pred CCcHHHhc
Confidence 57887643
No 21
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=0.92 Score=52.82 Aligned_cols=250 Identities=20% Similarity=0.197 Sum_probs=145.6
Q ss_pred CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHH
Q 008797 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL 141 (553)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL 141 (553)
=|+|-+.=+-++.+-.|-.-+=||+.||-++..|-|.....++...+++.-.|.+|. +-.--+||++.|+..||.-.|
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~--DpsCkRNAFi~L~~~D~ErAl 205 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQ--DPSCKRNAFLMLFTTDPERAL 205 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhcc--CchhHHHHHHHHHhcCHHHHH
Confidence 488999999999999999999999999999999999876778889999999888874 456779999999999988777
Q ss_pred HHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHH----HHHHHHHHh
Q 008797 142 TALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAE----FRMFMDFLK 217 (553)
Q Consensus 142 ~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eE----F~l~m~lL~ 217 (553)
.-+.+-|. +++ .++....-.|++.|+| +-. -+.+| |+.+|.+|.
T Consensus 206 ~Yl~~~id------------------------qi~----~~~~~LqlViVE~Irk---v~~-~~p~~~~~~i~~i~~lL~ 253 (948)
T KOG1058|consen 206 NYLLSNID------------------------QIP----SFNDSLQLVIVELIRK---VCL-ANPAEKARYIRCIYNLLS 253 (948)
T ss_pred HHHHhhHh------------------------hcc----CccHHHHHHHHHHHHH---HHh-cCHHHhhHHHHHHHHHHh
Confidence 66655553 111 2344555566666666 222 12222 345555665
Q ss_pred hccccCCCCchhHHHHHHHHHHHhhh-ccccCCCCChHHHHHHHHHHHHhhhhhccC--------------CchhhHHHH
Q 008797 218 SLSLFGEKAPTERMKELIGIIEGQAD-LDAQFNVSDADHIDRLISCLYMALPFFLRG--------------ASGSKFLNY 282 (553)
Q Consensus 218 sl~~~~~~s~~gr~qeLv~~i~eqa~-Ld~~f~~sd~d~idrli~cl~~Alp~fs~~--------------v~st~f~~y 282 (553)
+.... . + . |-|+ |-.. ++||..|.+..+|+-..+---|.+ ...-+.++=
T Consensus 254 stssa---V---~-f-------Eaa~tlv~l--S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~ 317 (948)
T KOG1058|consen 254 STSSA---V---I-F-------EAAGTLVTL--SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQG 317 (948)
T ss_pred cCCch---h---h-h-------hhcceEEEc--cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHH
Confidence 43211 0 0 0 0000 1000 234444433333322211111110 111222333
Q ss_pred HHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcC
Q 008797 283 LNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKA 362 (553)
Q Consensus 283 ~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~ 362 (553)
+.-.||++|+.=+-+.+--.|-.--.++ ..-.++.+.+.|++-+-....++-+=+-.|=-.|+=++|..+-++
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLv-------ssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F 390 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLV-------SSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF 390 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhh-------hhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC
Confidence 3335666665321121111121111221 222456677777765543333345667788888999999999999
Q ss_pred chhhhh
Q 008797 363 PNATNS 368 (553)
Q Consensus 363 P~~~~~ 368 (553)
|+....
T Consensus 391 p~~aat 396 (948)
T KOG1058|consen 391 PEVAAT 396 (948)
T ss_pred hHHHHH
Confidence 986543
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.85 E-value=0.16 Score=43.26 Aligned_cols=90 Identities=19% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-----HHHHHHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQ 112 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r-----iaDVL~Q 112 (553)
++...+.-|...+..+.+..|+... .++..++++..|+++.||..|+..|-.+|.+.++.... +..+|.+
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~ 98 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence 5577777777777777777665544 56678999999999999999999999999988664332 5778899
Q ss_pred HHhhchhHHHHHHHHHHHHH
Q 008797 113 LLAAEEIVERDAVHKALMSL 132 (553)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sl 132 (553)
+|++++...+..+-.+|.+|
T Consensus 99 ~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 99 LLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHh
Confidence 99988877777776666655
No 23
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.35 E-value=2.4 Score=43.72 Aligned_cols=227 Identities=17% Similarity=0.267 Sum_probs=119.8
Q ss_pred hcccchhHHHHHhhccccccccCc-chhhh-HHHHHHHHHhh--chhHHHHHHHHHHHHHHcc------chHHHHHHHHH
Q 008797 77 IEEEELGVRVQAIRGLPLFCKDTP-EYLSK-IVDILVQLLAA--EEIVERDAVHKALMSLLRQ------DVKASLTALFK 146 (553)
Q Consensus 77 cEDed~~IR~~aik~Lp~lck~~~-e~~~r-iaDVL~QLLqs--dd~~E~~~v~~aL~sllk~------D~k~tL~~lf~ 146 (553)
.-++|..+|..|+.-|..+...-| +++++ =+-+|++.+.+ +|..-+..+=++|.+|+++ .....+..+|+
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQ 87 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHH
Confidence 346888999999988887766555 33444 55667666666 6666666668888999877 33456666666
Q ss_pred hhccCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHH--------HHHHHHHHHhh
Q 008797 147 HIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGA--------EFRMFMDFLKS 218 (553)
Q Consensus 147 qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~e--------EF~l~m~lL~s 218 (553)
++.. ++=-...|-.+.+.+..=+..-..++..-+ .++|... ++-+++| =|.++.-++..
T Consensus 88 ~~~~---q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~---~~fv~~~-------i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 88 NVDV---QSLPQSTRYAVYQLLDSLLENHREALQSMG---DDFVYGF-------IQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hCCh---hhhhHHHHHHHHHHHHHHHHHhHHHHHhch---hHHHHHH-------HHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 5542 111223576666655443322222221111 1222211 1112222 13444444443
Q ss_pred ccccCCCCchhHHHHHHHHHHHhhhccccCCCCCh------HHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCC
Q 008797 219 LSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDA------DHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFD 292 (553)
Q Consensus 219 l~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~------d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~ 292 (553)
.++ . .-..+|-+.+.-===++=.-++.|| |-...+..|+. |-|.|. .|..-.++-+|+
T Consensus 155 ~~~-~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa---------~~~~p~LleKL~ 218 (262)
T PF14500_consen 155 FDI-S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFA---------PFAFPLLLEKLD 218 (262)
T ss_pred ccc-c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhH---------HHHHHHHHHHHc
Confidence 332 1 1123344444321001000113455 34456666654 333333 333334444444
Q ss_pred CCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHh
Q 008797 293 KLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY 332 (553)
Q Consensus 293 ~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~ 332 (553)
.=....|.+.|+.|....+-=++......+..|++.|+..
T Consensus 219 s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 219 STSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred CCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 4334689999999999876446666777888888888754
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.26 E-value=1.5 Score=56.44 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=84.6
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-
Q 008797 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI- 106 (553)
Q Consensus 34 y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ri- 106 (553)
...++...+ ++...++.|+..|....+.=++.. .-||..+..|....+..||.+|+-.|..+|.+.++.-..|
T Consensus 448 Ip~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~ 527 (2102)
T PLN03200 448 VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVE 527 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 445555455 778889999988888877555543 3678899999999999999999999999999764433324
Q ss_pred ----HHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhc
Q 008797 107 ----VDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (553)
Q Consensus 107 ----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~ 149 (553)
..-|+++|.+.++.-...+-++|.+|.+..-..++.-+..-+.
T Consensus 528 ~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 528 SAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 3367899999887666777777777776655555555554443
No 25
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.15 E-value=0.062 Score=63.09 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=14.2
Q ss_pred ccCCCcchHHHHHhhhhhcccchhH
Q 008797 60 KFFPDLSSRAVDAHLDLIEEEELGV 84 (553)
Q Consensus 60 k~FP~L~e~Ai~a~lDLcEDed~~I 84 (553)
.+||..+-..+..|=.+.|.+-..|
T Consensus 676 ~ilp~Hsq~~~~eqrkvf~~~p~gv 700 (1282)
T KOG0921|consen 676 EILPLHSQLTSQEQRKVFEPVPEGV 700 (1282)
T ss_pred ccccchhhcccHhhhhccCcccccc
Confidence 4566666666666666655554443
No 26
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=1.9 Score=50.29 Aligned_cols=114 Identities=21% Similarity=0.253 Sum_probs=94.1
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHH
Q 008797 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL 113 (553)
Q Consensus 35 ~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QL 113 (553)
-..+.... .+-..|+|.=.-+-.|-+--|+++.-|+|..++=|+|+++.||.-|+|.+-.+-.+ ..+..+.|=|.-+
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ey~~~Pl~~~ 129 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITEYLCDPLLKC 129 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHHHHHHHHHHh
Confidence 33333333 45779999999999999999999999999999999999999999999999887765 4566688888889
Q ss_pred HhhchhHHHHHHHHHHHHHHccchHH----HHHHHHHhhcc
Q 008797 114 LAAEEIVERDAVHKALMSLLRQDVKA----SLTALFKHIGS 150 (553)
Q Consensus 114 Lqsdd~~E~~~v~~aL~sllk~D~k~----tL~~lf~qI~~ 150 (553)
|.+++|-++..|.-+...+++.|+.- .|-..++++.+
T Consensus 130 l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~ 170 (734)
T KOG1061|consen 130 LKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS 170 (734)
T ss_pred ccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc
Confidence 99999999999999999999997752 34444556653
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.48 E-value=1.4 Score=52.74 Aligned_cols=78 Identities=18% Similarity=0.151 Sum_probs=36.4
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (553)
.++.+.+.|++.+.++. .++++..+.-+.+|+|..||..|+..|-.+...-+ -.++|.++|+++++..+
T Consensus 633 ~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-----~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 633 PDPGVRRTAVAVLTETT------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-----PAPALRDHLGSPDPVVR 701 (897)
T ss_pred CCHHHHHHHHHHHhhhc------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----chHHHHHHhcCCCHHHH
Confidence 44555555555555543 13344555555555555555555555544421110 12345555555555444
Q ss_pred HHHHHHHHH
Q 008797 123 DAVHKALMS 131 (553)
Q Consensus 123 ~~v~~aL~s 131 (553)
..+=.+|..
T Consensus 702 ~~A~~aL~~ 710 (897)
T PRK13800 702 AAALDVLRA 710 (897)
T ss_pred HHHHHHHHh
Confidence 444444433
No 28
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=92.81 E-value=4.2 Score=44.45 Aligned_cols=188 Identities=19% Similarity=0.272 Sum_probs=100.9
Q ss_pred chhh-hHHHHHHHHHhhchhHHHHHHHHHHHHHHcc--chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchh
Q 008797 101 EYLS-KIVDILVQLLAAEEIVERDAVHKALMSLLRQ--DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKA 177 (553)
Q Consensus 101 e~~~-riaDVL~QLLqsdd~~E~~~v~~aL~sllk~--D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~ 177 (553)
.|+. +.+==|+.++.|+|+.|++.++.-|..++.. +-+..+..- +-...+.|+.+--..-+
T Consensus 128 ~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~---------------i~~~~~~fi~e~~~~~g- 191 (409)
T PF01603_consen 128 KYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS---------------INNIFYRFIYETERHNG- 191 (409)
T ss_dssp TTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH---------------HHHHHHHHHHTTS--ST-
T ss_pred HHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH---------------HHHHHHHHhcCcccccC-
Confidence 4555 3666688899999999999999988888864 222222211 12233445543221111
Q ss_pred hhcCChHHHHHHHHHHHHHHhhhcc-cccHHHHH-HHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHH
Q 008797 178 ELLKPQEEMERHITDLIKKVLQSLE-DVTGAEFR-MFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADH 255 (553)
Q Consensus 178 e~l~~~eE~E~~i~~~ikK~~~vL~-dVT~eEF~-l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~ 255 (553)
-.|+-+.+-.-|+. .. .. .+|+. .|+.++ +|+..++.-. ..
T Consensus 192 -----I~elLeil~sii~g----f~~pl-k~eh~~fl~~vl--lPLh~~~~~~-------------------------~y 234 (409)
T PF01603_consen 192 -----IAELLEILGSIING----FAVPL-KEEHKQFLRKVL--LPLHKSPHLS-------------------------SY 234 (409)
T ss_dssp -----HHHHHHHHHHHHTT------SS---HHHHHHHHHTT--GGGGGSTGGG-------------------------GT
T ss_pred -----HHHHHHHHHHHHhc----cCCCC-cHHHHHHHHHHH--HHHhcCCcHH-------------------------HH
Confidence 11222222111111 11 22 23333 345555 3444322211 12
Q ss_pred HHHHHHHHHHhhhhhccCCch-hhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcC
Q 008797 256 IDRLISCLYMALPFFLRGASG-SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMP 334 (553)
Q Consensus 256 idrli~cl~~Alp~fs~~v~s-t~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP 334 (553)
-..+..|+.+-+ .+.... ..++.|+. +..|+ .....++-+|..+.++...+.+.+-..+..++|..|...+-
T Consensus 235 ~~~L~~~~~~f~---~kdp~l~~~~i~~ll-k~WP~---t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~ 307 (409)
T PF01603_consen 235 HQQLSYCVVQFL---EKDPSLAEPVIKGLL-KHWPK---TNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCIS 307 (409)
T ss_dssp HHHHHHHHHHHH---HH-GGGHHHHHHHHH-HHS-S---S-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHH-HhCCC---CCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Confidence 244555555422 222222 33333333 34453 33578899999999999999988989999999999999995
Q ss_pred CCCCCCCccchHHHHHHHHHH
Q 008797 335 LRKTGGEEMNFTYVECLLYTF 355 (553)
Q Consensus 335 ~~~~~~~~l~fs~vEcLL~af 355 (553)
+ .+|..+|-.|+.+
T Consensus 308 S-------~h~qVAErAl~~w 321 (409)
T PF01603_consen 308 S-------PHFQVAERALYFW 321 (409)
T ss_dssp S-------SSHHHHHHHHGGG
T ss_pred C-------CCHHHHHHHHHHH
Confidence 4 6777777777654
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=4.1 Score=49.40 Aligned_cols=142 Identities=17% Similarity=0.230 Sum_probs=96.1
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHH---Hhhhh-hcccchhHHHHHhhccccccccC---c
Q 008797 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVD---AHLDL-IEEEELGVRVQAIRGLPLFCKDT---P 100 (553)
Q Consensus 29 ~~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~---a~lDL-cEDed~~IR~~aik~Lp~lck~~---~ 100 (553)
+-.+-.+.++..++ ++++....|=-.+..+=-.|++-.-.=|+ .++-= .-|.+..||+.|+|++-.+...+ +
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 45566777788888 77888888877777777777766654333 33332 35667779999999999888766 3
Q ss_pred ch-------hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccC-----CCCCChHHHHHHHHHHH
Q 008797 101 EY-------LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV-----DEPSTDEFIREKVLSFI 168 (553)
Q Consensus 101 e~-------~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~-----~e~~~eE~vREr~lkFl 168 (553)
.- +|++..||.-+++.+|..-..-+=++|.+|+...|| .|+-.|++|... ..-+=|+.+|-.+|.||
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33 445555555566667766678888999999999998 445555554321 11223556788888887
Q ss_pred Hhh
Q 008797 169 RDK 171 (553)
Q Consensus 169 ~~k 171 (553)
..-
T Consensus 274 vs~ 276 (1075)
T KOG2171|consen 274 VSL 276 (1075)
T ss_pred HHH
Confidence 753
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=91.76 E-value=0.63 Score=55.49 Aligned_cols=90 Identities=24% Similarity=0.293 Sum_probs=68.9
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc-chHHHHHHH
Q 008797 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKASLTAL 144 (553)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D~k~tL~~l 144 (553)
...+++.++..++|+|+.||..|++.|..+.. +.....|.++|.++++..+..+=.+|..+... .+.. .+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~---~L 689 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAP---AL 689 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchH---HH
Confidence 44577889999999999999999999999863 35788999999999999999998998887543 2222 33
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHH
Q 008797 145 FKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 145 f~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
...+. +.++.||.-++..|.
T Consensus 690 ~~~L~-----~~d~~VR~~A~~aL~ 709 (897)
T PRK13800 690 RDHLG-----SPDPVVRAAALDVLR 709 (897)
T ss_pred HHHhc-----CCCHHHHHHHHHHHH
Confidence 33333 356678888887655
No 31
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.26 E-value=6.5 Score=45.97 Aligned_cols=133 Identities=13% Similarity=0.259 Sum_probs=83.3
Q ss_pred hhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc-chHHHHHHHHHhhccCC
Q 008797 74 LDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKASLTALFKHIGSVD 152 (553)
Q Consensus 74 lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D~k~tL~~lf~qI~~~~ 152 (553)
=-||||.|.+.+--|.=++..+.|.+|..++.-=||..++|...|++-+.-+-.=|..++.- +-......|+.|...
T Consensus 305 r~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~-- 382 (877)
T KOG1059|consen 305 RIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEK-- 382 (877)
T ss_pred hhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--
Confidence 34689999999999999999999999999999999999999998887665544444444443 334444567777763
Q ss_pred CCCChHHHHHHHHH-------------------HHHh--hcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHH
Q 008797 153 EPSTDEFIREKVLS-------------------FIRD--KVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRM 211 (553)
Q Consensus 153 e~~~eE~vREr~lk-------------------Fl~~--kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l 211 (553)
++...-|..++. ||+. .|..++..-. +..+.+.++++.-+ +.++..++..++-.
T Consensus 383 --ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~--G~~I~eQi~Dv~iR-V~~iR~fsV~~m~~ 457 (877)
T KOG1059|consen 383 --AEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRH--GSLIAEQIIDVAIR-VPSIRPFSVSQMSA 457 (877)
T ss_pred --ccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccch--hhHHHHHHHHHhee-chhhhHhHHHHHHH
Confidence 222334443332 1111 2334433222 45566667776655 34455566655544
Q ss_pred HH
Q 008797 212 FM 213 (553)
Q Consensus 212 ~m 213 (553)
+.
T Consensus 458 Ll 459 (877)
T KOG1059|consen 458 LL 459 (877)
T ss_pred HH
Confidence 43
No 32
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=4.2 Score=47.49 Aligned_cols=316 Identities=18% Similarity=0.197 Sum_probs=169.7
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhhhHHhc-----------------cCCCcchHHHHHhhhhhcccchhHHHHHhhccccc
Q 008797 33 DYEGIIEAAKTSLKAKQLAAQLIPRFFK-----------------FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLF 95 (553)
Q Consensus 33 ~y~~Il~~~kgs~k~K~LAaqfI~kffk-----------------~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~l 95 (553)
-|.=++.-+++.+..-.+|-.+|-+=|+ .++...+-+++.+.-.-.|+++-||+.|.=..-.+
T Consensus 69 vyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl 148 (734)
T KOG1061|consen 69 VYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKL 148 (734)
T ss_pred HHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence 4666677777776666666555444333 25667788899999999999999999998777777
Q ss_pred cccCcchhhh--HHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccC-CC--CCChHHHHHHHHHHHHh
Q 008797 96 CKDTPEYLSK--IVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV-DE--PSTDEFIREKVLSFIRD 170 (553)
Q Consensus 96 ck~~~e~~~r--iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~-~e--~~~eE~vREr~lkFl~~ 170 (553)
-..+++++-. +.|.|.+|+-+++|..+..+-.||..+..++|-..+..+-.++... -+ ..-+|=-+--++.++..
T Consensus 149 ~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~ 228 (734)
T KOG1061|consen 149 FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAE 228 (734)
T ss_pred hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 7777777544 9999999999999999999999999999998742222222222100 00 01111123334444333
Q ss_pred hcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCC
Q 008797 171 KVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNV 250 (553)
Q Consensus 171 kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~ 250 (553)
.+-+ +..|++..+..+.-..-.+-..|--..-..+|..+..++.+. ..+.+-+..+ |-...+.
T Consensus 229 y~p~-------d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~--------~~~~~K~~~p--l~tlls~ 291 (734)
T KOG1061|consen 229 YVPK-------DSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVN--------ELLFKKVAPP--LVTLLSS 291 (734)
T ss_pred cCCC-------CchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHH--------HHHHHHhccc--ceeeecc
Confidence 2211 222444333222222000111222222344555554443321 2233333322 1111110
Q ss_pred -CChHHH-HHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCC---CCC----hhhhhhHHHHHHHhCCCCCchh---h
Q 008797 251 -SDADHI-DRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFD---KLP----EERKLDLLKALAEISPYTTPQD---S 318 (553)
Q Consensus 251 -sd~d~i-drli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~---~l~----~~~kl~lLK~lAe~s~~~~~~~---a 318 (553)
+...++ =|=|..+-+..|.+-+ .+.-.|+|+.-=|..- ++. ...+-.+-.+++|+..||+..| +
T Consensus 292 ~~e~qyvaLrNi~lil~~~p~~~~----~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fv 367 (734)
T KOG1061|consen 292 ESEIQYVALRNINLILQKRPEILK----VEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFV 367 (734)
T ss_pred cchhhHHHHhhHHHHHHhChHHHH----hHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHH
Confidence 111221 1223334444554322 3555566665555322 221 1234455678899999998766 4
Q ss_pred hhhhHHHHHHHHHhcCCCCC--------CCCccchHHHHHHHHHHHHhhhcCchhhhhccC
Q 008797 319 RQILPSVAVLLKKYMPLRKT--------GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCG 371 (553)
Q Consensus 319 ~~~l~~i~~~L~~~mP~~~~--------~~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg 371 (553)
++-+-.|++.-.++=.. .. -+.+-++-.-||..+ +..+.||+|+-..++|-
T Consensus 368 rkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vv-i~dilRkyP~~~~~vv~ 426 (734)
T KOG1061|consen 368 RKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVV-IRDILRKYPNKYESVVA 426 (734)
T ss_pred HHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHH-HHhhhhcCCCchhhhhh
Confidence 55555555544443332 10 134455666677664 66789999997655543
No 33
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=90.87 E-value=0.29 Score=57.79 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=9.5
Q ss_pred cHHHHhhhhhcCCCCcc
Q 008797 451 NILAMSKPLHSKTPSFI 467 (553)
Q Consensus 451 NI~~li~~L~~~pPsf~ 467 (553)
-++.||++++. ||+.
T Consensus 1128 rllnmiRdIs~--pSAa 1142 (1282)
T KOG0921|consen 1128 RLLNMIRDISR--PSAA 1142 (1282)
T ss_pred HHHHHHHHhcc--cccc
Confidence 45667777765 4555
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.51 E-value=1.4 Score=42.92 Aligned_cols=162 Identities=15% Similarity=0.185 Sum_probs=92.3
Q ss_pred cChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008797 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (553)
Q Consensus 29 ~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaD 108 (553)
.+.+....+-..++|+. ...+.+.|+..+. +.+..+.....|.-+.|-+.|+.-|-.++..-..++...+|
T Consensus 23 ~r~~al~~L~~l~~~~~-----~~~~~~~~~~~l~----~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGNA-----PEDFPPDFVECLR----QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HHHHHHHHHHHHHHH-B----------HHHHHHHH-------HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-----ccccHHHHHHHHH----HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 45556666666666441 1334444544443 44567777788888999999988888887776666666666
Q ss_pred HHHHHH----hhchhHHHHHHHHHHHHHHccch--HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccch--hhhc
Q 008797 109 ILVQLL----AAEEIVERDAVHKALMSLLRQDV--KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLK--AELL 180 (553)
Q Consensus 109 VL~QLL----qsdd~~E~~~v~~aL~sllk~D~--k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~--~e~l 180 (553)
.++..| .+....-++.+.++|.+++..-+ ..++..++.+... +-...+|..++.||..-+...+ ...+
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~----~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLK----SKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-----S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 655544 44556888999999999999977 4443566665543 4456799999999998877776 3444
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccHH
Q 008797 181 KPQEEMERHITDLIKKVLQSLEDVTGA 207 (553)
Q Consensus 181 ~~~eE~E~~i~~~ikK~~~vL~dVT~e 207 (553)
..... -..++..|.+ .|.|-+.+
T Consensus 170 ~~~~~-~~~l~~~l~~---~l~D~~~~ 192 (228)
T PF12348_consen 170 QKSAF-LKQLVKALVK---LLSDADPE 192 (228)
T ss_dssp --HHH-HHHHHHHHHH---HHTSS-HH
T ss_pred cccch-HHHHHHHHHH---HCCCCCHH
Confidence 32111 2445666666 67776654
No 35
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=90.39 E-value=14 Score=43.47 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=48.1
Q ss_pred hhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCC--CCchh-hhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHH
Q 008797 277 SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPY--TTPQD-SRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLY 353 (553)
Q Consensus 277 t~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~--~~~~~-a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~ 353 (553)
..|+.|+.+.+.|... ++|..+++.-.+.-+|.. |...- ...+++.++++|..+.- +=-+|==++|
T Consensus 532 ~~llp~L~~~L~~g~~--~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe---------DdE~VlQil~ 600 (708)
T PF05804_consen 532 YNLLPWLKDLLKPGAS--EDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE---------DDEIVLQILY 600 (708)
T ss_pred CCHHHHHHHHhCCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc---------hHHHHHHHHH
Confidence 4666777777777433 357788888888877642 21111 23346777777776652 2233445789
Q ss_pred HHHHhhhcCch
Q 008797 354 TFHHLAHKAPN 364 (553)
Q Consensus 354 afh~L~~k~P~ 364 (553)
+|++|.++.+.
T Consensus 601 ~f~~ll~h~~t 611 (708)
T PF05804_consen 601 VFYQLLFHEET 611 (708)
T ss_pred HHHHHHcChHH
Confidence 99999887443
No 36
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.38 E-value=48 Score=39.98 Aligned_cols=91 Identities=22% Similarity=0.194 Sum_probs=70.4
Q ss_pred HHhhhhhHHhccCCC---cchHHHHHhhh-hhcccchhHHHHHhhccccccccCc--chhhhHHHHHHHHHhhchhHHHH
Q 008797 50 LAAQLIPRFFKFFPD---LSSRAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTP--EYLSKIVDILVQLLAAEEIVERD 123 (553)
Q Consensus 50 LAaqfI~kffk~FP~---L~e~Ai~a~lD-LcEDed~~IR~~aik~Lp~lck~~~--e~~~riaDVL~QLLqsdd~~E~~ 123 (553)
=|--+|++|-+.||. +-..=+|+.+- |-.|+-+.||+.|++.+--+|+-.+ ...+.|-|+|.||...-......
T Consensus 469 Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~ 548 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLV 548 (1005)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHH
Confidence 355678889888764 33344444443 4566677799999999999996442 23788999999999988888899
Q ss_pred HHHHHHHHHHccchHHH
Q 008797 124 AVHKALMSLLRQDVKAS 140 (553)
Q Consensus 124 ~v~~aL~sllk~D~k~t 140 (553)
.+-.+|.+..+.||+-+
T Consensus 549 llmE~Ls~vv~~dpef~ 565 (1005)
T KOG2274|consen 549 LLMEALSSVVKLDPEFA 565 (1005)
T ss_pred HHHHHHHHHhccChhhh
Confidence 99999999999999854
No 37
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.86 E-value=0.16 Score=35.28 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=23.7
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccc
Q 008797 70 VDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (553)
Q Consensus 70 i~a~lDLcEDed~~IR~~aik~Lp~lck 97 (553)
+..++.+++|+++.||.+|+..|..+|+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999988875
No 38
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.68 E-value=9.2 Score=44.81 Aligned_cols=236 Identities=21% Similarity=0.261 Sum_probs=141.6
Q ss_pred CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHH-
Q 008797 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL- 141 (553)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL- 141 (553)
|+|+.+--+-++-|..---+=||+.||--|..+|--.||-+.---+=|.-=|-+.||....++=+.+.+|-+-+|+.-|
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 8999999999999999999999999999999999999999988999999999999999999999999999999999855
Q ss_pred -HHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH----
Q 008797 142 -TALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFL---- 216 (553)
Q Consensus 142 -~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL---- 216 (553)
.-+|-++.+ .+..-=+--|+||.. ..|-++.+-+ ++-+=+-|+++|.. -.-|++|
T Consensus 219 LAP~ffkllt---tSsNNWmLIKiiKLF-~aLtplEPRL---gKKLieplt~li~s-------------T~AmSLlYECv 278 (877)
T KOG1059|consen 219 LAPLFYKLLV---TSSNNWVLIKLLKLF-AALTPLEPRL---GKKLIEPITELMES-------------TVAMSLLYECV 278 (877)
T ss_pred ccHHHHHHHh---ccCCCeehHHHHHHH-hhccccCchh---hhhhhhHHHHHHHh-------------hHHHHHHHHHH
Confidence 455655552 122223455666622 2455554333 12222334444443 0012222
Q ss_pred hhccccCCCC-chhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCC
Q 008797 217 KSLSLFGEKA-PTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLP 295 (553)
Q Consensus 217 ~sl~~~~~~s-~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~ 295 (553)
+..-...=.+ .+.+ ...+++.+.. |...+..+|+- =+.|.|+-+. .+.+ ...++|+-.-+-|+-.|++-+
T Consensus 279 NTVVa~s~s~g~~d~-~asiqLCvqK--Lr~fiedsDqN--LKYlgLlam~--KI~k--tHp~~Vqa~kdlIlrcL~DkD 349 (877)
T KOG1059|consen 279 NTVVAVSMSSGMSDH-SASIQLCVQK--LRIFIEDSDQN--LKYLGLLAMS--KILK--THPKAVQAHKDLILRCLDDKD 349 (877)
T ss_pred HHheeehhccCCCCc-HHHHHHHHHH--HhhhhhcCCcc--HHHHHHHHHH--HHhh--hCHHHHHHhHHHHHHHhccCC
Confidence 1100000000 0011 3344444432 22222222221 1223322211 1111 123445555556666777777
Q ss_pred hhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcC
Q 008797 296 EERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMP 334 (553)
Q Consensus 296 ~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP 334 (553)
+-.|++-|-+|=.|.. .+.+-.|...|+.+|-
T Consensus 350 ~SIRlrALdLl~gmVs-------kkNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 350 ESIRLRALDLLYGMVS-------KKNLMEIVKTLMKHVE 381 (877)
T ss_pred chhHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 7789998888877754 5555566666666664
No 39
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.42 E-value=5.5 Score=51.62 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=98.0
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc-----chHHHHHhhhhhcccchhHHHHHhhccccccccCcch----
Q 008797 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY---- 102 (553)
Q Consensus 33 ~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~---- 102 (553)
.-..|.+..+ |++..|+.|+..|..||..=|+. ...+|--++.|....+..||++|-..|-.+.....+.
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~ 689 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVS 689 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4555666666 88999999999999999977775 3457788999999999999999999999888644322
Q ss_pred -hhh-HHHHHHHHHhhchhHHHHHHHHHHHHHHccch-------HHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 008797 103 -LSK-IVDILVQLLAAEEIVERDAVHKALMSLLRQDV-------KASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (553)
Q Consensus 103 -~~r-iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~-------k~tL~~lf~qI~~~~e~~~eE~vREr~lkF 167 (553)
+.. ++-.|++||.+.+....+.+-.+|..+++..- .+.+..|...+. +|.+..|+.+-.=
T Consensus 690 ~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr-----~G~~~~k~~Aa~A 758 (2102)
T PLN03200 690 YAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR-----EGTLEGKRNAARA 758 (2102)
T ss_pred HHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH-----hCChHHHHHHHHH
Confidence 222 66789999999999888999899888888631 123455555555 6666677655543
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=88.77 E-value=46 Score=37.40 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=88.8
Q ss_pred CCHHHHHHHhhhhhHHhccCC--CcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchh-----hhHHHHHHHHHh
Q 008797 43 TSLKAKQLAAQLIPRFFKFFP--DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL-----SKIVDILVQLLA 115 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP--~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~-----~riaDVL~QLLq 115 (553)
.+...-.++...|.+.|+.++ ++..+....+......+++.||.-+++.|-.+..++...+ ..+...+.++|.
T Consensus 50 ~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~ 129 (503)
T PF10508_consen 50 SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR 129 (503)
T ss_pred cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc
Confidence 345555688899999998764 3456777888888889999999999999877776654421 236677889999
Q ss_pred hchhHHHHHHHHHHHHHHccchHHH-H-----HHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 116 AEEIVERDAVHKALMSLLRQDVKAS-L-----TALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 116 sdd~~E~~~v~~aL~sllk~D~k~t-L-----~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
.+|......+-++|..+.+..+.-. | -.-+.++.. ..++.+|-|++..+..
T Consensus 130 ~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~----~~~~~vR~Rv~el~v~ 186 (503)
T PF10508_consen 130 DPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMS----QSSDIVRCRVYELLVE 186 (503)
T ss_pred CCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHh----ccCHHHHHHHHHHHHH
Confidence 9999999999999999998754321 1 111233331 3367788888887664
No 41
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.43 E-value=2.6 Score=47.19 Aligned_cols=131 Identities=22% Similarity=0.289 Sum_probs=89.3
Q ss_pred ccchHHHHHHHHHhh--hhhhc-------------------ccc-c--cChhhHHHHHHHhcCC---HHHHHHHhhhh--
Q 008797 5 SDEAKQIEKLYEFGE--RLNEA-------------------KDK-S--QNVKDYEGIIEAAKTS---LKAKQLAAQLI-- 55 (553)
Q Consensus 5 ~~~~~~ie~LY~~~~--~L~~a-------------------kdk-~--~~~~~y~~Il~~~kgs---~k~K~LAaqfI-- 55 (553)
=||..-|++||..|- .+... |.. + ....--+.+.++..|+ .+.|.++-|||
T Consensus 268 ~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~ 347 (501)
T PF13001_consen 268 LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRG 347 (501)
T ss_pred CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhc
Confidence 477788999999997 21111 000 0 1122234444555544 79999999999
Q ss_pred -hHHhccCCCcchHH-----HHHhhhhhc--------ccchhHHHHHhhccccccccCcchhhhHHHHHHHH---Hhhch
Q 008797 56 -PRFFKFFPDLSSRA-----VDAHLDLIE--------EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL---LAAEE 118 (553)
Q Consensus 56 -~kffk~FP~L~e~A-----i~a~lDLcE--------Ded~~IR~~aik~Lp~lck~~~e~~~riaDVL~QL---Lqsdd 118 (553)
..=+++++.-.=+. ++....+.+ -++...|-.||..|-.+++..|..+.+-.+++..| |..++
T Consensus 348 ~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~ 427 (501)
T PF13001_consen 348 SSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDES 427 (501)
T ss_pred chHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcc
Confidence 98888888744333 334445553 24567899999999999999999986655555444 44577
Q ss_pred hHHHHHHHHHHHHHHcc
Q 008797 119 IVERDAVHKALMSLLRQ 135 (553)
Q Consensus 119 ~~E~~~v~~aL~sllk~ 135 (553)
+.-+..+..||.++...
T Consensus 428 ~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 428 PEVRVSIQEALSSLAPA 444 (501)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 78888999998887765
No 42
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.27 E-value=0.75 Score=35.31 Aligned_cols=49 Identities=29% Similarity=0.330 Sum_probs=37.1
Q ss_pred hHHHHHhhccccccccCcch----hhhHHHHHHHHHhhchhHHHHHHHHHHHH
Q 008797 83 GVRVQAIRGLPLFCKDTPEY----LSKIVDILVQLLAAEEIVERDAVHKALMS 131 (553)
Q Consensus 83 ~IR~~aik~Lp~lck~~~e~----~~riaDVL~QLLqsdd~~E~~~v~~aL~s 131 (553)
.||..|+..|-.++...++. ++.+...|.++|+++++..+..+-.+|-+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 58889999998887666554 56788888899988887777777666543
No 43
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.46 E-value=12 Score=42.83 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=96.3
Q ss_pred hhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHH--HHHhhhhh----cccchhHHHHHhhcc------cccccc
Q 008797 31 VKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRA--VDAHLDLI----EEEELGVRVQAIRGL------PLFCKD 98 (553)
Q Consensus 31 ~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~A--i~a~lDLc----EDed~~IR~~aik~L------p~lck~ 98 (553)
.+-|..+-..+..+...=+=+|....|-+|+-+.-+..+ +...+-|. -+-++..|+.-++=| |.+---
T Consensus 124 n~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~ 203 (675)
T KOG0212|consen 124 NEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI 203 (675)
T ss_pred HHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH
Confidence 344555555566666666667777777777766544422 22222222 223666777666544 333222
Q ss_pred CcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc---ch-----HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 99 TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DV-----KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 99 ~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---D~-----k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
.|++-+-|.|.++|.....+.+++...+|.++|+- +| ..+++.+-.|.. +.++.++.++|++|.+
T Consensus 204 --~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~-----ss~~~iq~~al~Wi~e 276 (675)
T KOG0212|consen 204 --SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ-----SSEPEIQLKALTWIQE 276 (675)
T ss_pred --hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc-----CCcHHHHHHHHHHHHH
Confidence 47899999999999988888888999988888763 44 446777777776 7788899999999999
Q ss_pred hcccchhhhc
Q 008797 171 KVFPLKAELL 180 (553)
Q Consensus 171 kl~~l~~e~l 180 (553)
=+..-+.+++
T Consensus 277 fV~i~g~~~l 286 (675)
T KOG0212|consen 277 FVKIPGRDLL 286 (675)
T ss_pred HhcCCCcchh
Confidence 7766665554
No 44
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=87.25 E-value=3.1 Score=39.69 Aligned_cols=115 Identities=24% Similarity=0.212 Sum_probs=95.5
Q ss_pred cChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008797 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (553)
Q Consensus 29 ~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaD 108 (553)
.+.+.|...|..+..-.-+=.+|+.++..+....|.+ ..+.....+++.-+|..|+=.+-.+.+. ..++..+-+
T Consensus 71 ~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~~~-----~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~ 144 (197)
T cd06561 71 EDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEPEL-----DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLE 144 (197)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCcch-----HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHH
Confidence 5667778788755555667788899888888888877 7788899999999999998888777776 357888999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhc
Q 008797 109 ILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (553)
Q Consensus 109 VL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~ 149 (553)
++..++.+++.-...+|-++|.++.+.+|..++.-+-.+..
T Consensus 145 ~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~~ 185 (197)
T cd06561 145 IIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNGL 185 (197)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877755543
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.78 E-value=2.6 Score=48.75 Aligned_cols=193 Identities=21% Similarity=0.226 Sum_probs=102.0
Q ss_pred hhhhhcccchhHHHHHhhccccccccCcc----hhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc-chHHHHHHHHHh
Q 008797 73 HLDLIEEEELGVRVQAIRGLPLFCKDTPE----YLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKASLTALFKH 147 (553)
Q Consensus 73 ~lDLcEDed~~IR~~aik~Lp~lck~~~e----~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D~k~tL~~lf~q 147 (553)
++-|..|+|+.||++.-++|.-+----|+ |+.-|+.-..|..|+-|....--+-.=..++-.+ .++..|..-+.+
T Consensus 220 lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~k 299 (885)
T KOG2023|consen 220 LFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDK 299 (885)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 45688999999999999988776544443 4566777777777763332222222223333322 677777766666
Q ss_pred hccC---------------CCCCChHHH--HHHHHH--HHHhhcccchhhhcCChHHH------------HHHHHHHHHH
Q 008797 148 IGSV---------------DEPSTDEFI--REKVLS--FIRDKVFPLKAELLKPQEEM------------ERHITDLIKK 196 (553)
Q Consensus 148 I~~~---------------~e~~~eE~v--REr~lk--Fl~~kl~~l~~e~l~~~eE~------------E~~i~~~ikK 196 (553)
|.+. ....+|+.+ ||.=|+ |-+.|....+.+-- .|+- .=-+-.....
T Consensus 300 liPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~--~eDdddDe~DDdD~~~dWNLRkCSAA 377 (885)
T KOG2023|consen 300 LIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDAD--DEDDDDDEDDDDDAFSDWNLRKCSAA 377 (885)
T ss_pred HHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccc--cccccccccccccccccccHhhccHH
Confidence 6432 101112222 444333 54455444433210 1111 1123334455
Q ss_pred HhhhcccccHHHH-HHHHHHHhhccccC-CCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhh
Q 008797 197 VLQSLEDVTGAEF-RMFMDFLKSLSLFG-EKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFF 270 (553)
Q Consensus 197 ~~~vL~dVT~eEF-~l~m~lL~sl~~~~-~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~f 270 (553)
+++||..|-++|. ..+|-+|+. .++. +=..++-..-.+..++| +=-+-|.+.=|+-|.-+++|+.-=-|.+
T Consensus 378 aLDVLanvf~~elL~~l~PlLk~-~L~~~~W~vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L~DKkplV 450 (885)
T KOG2023|consen 378 ALDVLANVFGDELLPILLPLLKE-HLSSEEWKVREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLLDDKKPLV 450 (885)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH-HcCcchhhhhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHhccCccce
Confidence 6889999999887 356666664 2221 11111111112355554 2334466666777888888877665554
No 46
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=86.58 E-value=48 Score=39.41 Aligned_cols=94 Identities=26% Similarity=0.330 Sum_probs=56.0
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (553)
-+.+.|||.==-+-+|-|.-|+++=.|+|++.+=.+|.++-||-.|||.+..+=. ++.+.-+.|-+-|++....+-++
T Consensus 67 rd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~~~~~~ik~~l~d~~ayVR 144 (757)
T COG5096 67 RDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELLGNIIDPIKKLLTDPHAYVR 144 (757)
T ss_pred cCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCCcHHHH
Confidence 3456666666666666666666666666666666666666666666666655433 25555555555555555555555
Q ss_pred HHHHHHHHHHHccchH
Q 008797 123 DAVHKALMSLLRQDVK 138 (553)
Q Consensus 123 ~~v~~aL~sllk~D~k 138 (553)
..|--|+..+++.|+.
T Consensus 145 k~Aalav~kly~ld~~ 160 (757)
T COG5096 145 KTAALAVAKLYRLDKD 160 (757)
T ss_pred HHHHHHHHHHHhcCHh
Confidence 5555555555555444
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.57 E-value=1.3 Score=39.14 Aligned_cols=67 Identities=24% Similarity=0.247 Sum_probs=52.0
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcch----hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHc
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LSKIVDILVQLLAAEEIVERDAVHKALMSLLR 134 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~----~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk 134 (553)
++-+.-++....|+|..||-.|...|.+++|..++- ...|=|+|..++..-|+..+..+ ..|..++|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 356888999999999999999999999999875543 46688888888887777766655 44554443
No 48
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=84.37 E-value=3.1 Score=40.20 Aligned_cols=80 Identities=24% Similarity=0.243 Sum_probs=67.2
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHH
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~ 146 (553)
+.+..-+...++++++-+|..|+-.+-.+.+. ++...+-+++..++.+++.-...+|-.+|.++.+.||.-++.-|-.
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 55677788899999999999999998888887 7788999999999999999999999999999999999887777655
Q ss_pred hh
Q 008797 147 HI 148 (553)
Q Consensus 147 qI 148 (553)
+.
T Consensus 197 ~~ 198 (213)
T PF08713_consen 197 NS 198 (213)
T ss_dssp S-
T ss_pred Cc
Confidence 43
No 49
>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]
Probab=84.31 E-value=0.58 Score=50.44 Aligned_cols=31 Identities=42% Similarity=0.700 Sum_probs=17.1
Q ss_pred hhhhhhhhcCCC--CCCC--CCCCCcccCCCCCCCCC
Q 008797 518 NQLVNRALEGIS--RGGR--GGIRGRGRGWGARGRGR 550 (553)
Q Consensus 518 ~~~~~~~~~g~~--~~~~--~g~rgrgr~~g~~gr~~ 550 (553)
.++|....|+++ +++. +|.||||| ||||+|.
T Consensus 307 ~~vf~k~~n~~~~~~~~~~~~~~RgrGr--GgRg~gg 341 (365)
T KOG2945|consen 307 INVFDKPANFNSDRLEGNGGGGPRGRGR--GGRGEGG 341 (365)
T ss_pred hheeeccccccccccccCCCCCCccCCC--CCCCCCC
Confidence 567777777774 2222 34444444 6666554
No 50
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.09 E-value=68 Score=38.29 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=57.0
Q ss_pred cchhHHHHHhhccccccccCcchhhhHHHHHHHHHhh-chh--HHHHHHHHHHHHHHccchHHHHHHHHHhhc
Q 008797 80 EELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA-EEI--VERDAVHKALMSLLRQDVKASLTALFKHIG 149 (553)
Q Consensus 80 ed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqs-dd~--~E~~~v~~aL~sllk~D~k~tL~~lf~qI~ 149 (553)
.|+=+.++.+|=|-.+.++++++-....|||+|+.-- |.. +=-.+...+..+++.++|.+-|..+--.|.
T Consensus 246 ~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiL 318 (866)
T KOG1062|consen 246 SDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINIL 318 (866)
T ss_pred CchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 4555899999999999999999888899999999864 322 455667788899999999988888766665
No 51
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.06 E-value=68 Score=37.71 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=67.6
Q ss_pred HhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc--chHHHHHHHHHhhc
Q 008797 72 AHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ--DVKASLTALFKHIG 149 (553)
Q Consensus 72 a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~--D~k~tL~~lf~qI~ 149 (553)
|++-=.|||=-.||++|+-.+-.+....|.+-.+--|.|+-+++.|..+.+.-+-++|..+-.. =-..-|..++.-|.
T Consensus 377 A~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~ 456 (823)
T KOG2259|consen 377 ALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLE 456 (823)
T ss_pred eeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHH
Confidence 4444568888889999999999999999999999999999999999998888887777655443 01223344444443
Q ss_pred cCCCCCChHHHHHHHHHHHHh
Q 008797 150 SVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 150 ~~~e~~~eE~vREr~lkFl~~ 170 (553)
.....+|+-+...|+.
T Consensus 457 -----D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 457 -----DRSVDVREALRELLKN 472 (823)
T ss_pred -----hcCHHHHHHHHHHHHh
Confidence 2334566666655553
No 52
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=81.60 E-value=0.81 Score=41.37 Aligned_cols=16 Identities=75% Similarity=1.238 Sum_probs=6.8
Q ss_pred CCCCcccCCCCCCCCCC
Q 008797 535 GIRGRGRGWGARGRGRG 551 (553)
Q Consensus 535 g~rgrgr~~g~~gr~~~ 551 (553)
.+|||||| +|||||+|
T Consensus 94 ~~rgrgrg-~Grg~~~g 109 (109)
T KOG3428|consen 94 VGRGRGRG-RGRGRGRG 109 (109)
T ss_pred cccccccc-cccCCCCC
Confidence 44444444 33334443
No 53
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=81.59 E-value=9.6 Score=44.99 Aligned_cols=113 Identities=20% Similarity=0.219 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHhhhhhHHhcc-----------------CCCcchHHHHHhhhhhcccchhHHHHHhhcccccc
Q 008797 34 YEGIIEAAKTSLKAKQLAAQLIPRFFKF-----------------FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFC 96 (553)
Q Consensus 34 y~~Il~~~kgs~k~K~LAaqfI~kffk~-----------------FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lc 96 (553)
|.=++--+|+.|.+-.||...|-+=|.| =|++.+.+++++.++.+|...-||+.|+=++-.+-
T Consensus 76 ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 76 YLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 3334445555666666666666554443 37888999999999999999999999999999999
Q ss_pred ccCcchhhhH--HHHHHHHHhhchhHHHHHHHHHHHHHHccchH---HHHHHHHHhhc
Q 008797 97 KDTPEYLSKI--VDILVQLLAAEEIVERDAVHKALMSLLRQDVK---ASLTALFKHIG 149 (553)
Q Consensus 97 k~~~e~~~ri--aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k---~tL~~lf~qI~ 149 (553)
+-+++++.-. .|+|.-|+.+.||. ++.+||.++...||. +-++.++.+|.
T Consensus 156 ~ld~~l~~~~g~~~~l~~l~~D~dP~---Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~ 210 (757)
T COG5096 156 RLDKDLYHELGLIDILKELVADSDPI---VIANALASLAEIDPELAHGYSLEVILRIP 210 (757)
T ss_pred hcCHhhhhcccHHHHHHHHhhCCCch---HHHHHHHHHHHhchhhhhhHHHHHHHHhh
Confidence 8888888875 66776666677765 466777777777766 55666667765
No 54
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.05 E-value=19 Score=40.55 Aligned_cols=136 Identities=21% Similarity=0.158 Sum_probs=84.8
Q ss_pred chHHHHHHHHHhhh--------hhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhc
Q 008797 7 EAKQIEKLYEFGER--------LNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIE 78 (553)
Q Consensus 7 ~~~~ie~LY~~~~~--------L~~akdk~~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcE 78 (553)
+.+.|+.+|+.... +=||--.+.+.++++.|.+..+...-.-.-|++++..-+..=|.-..+.++++++||+
T Consensus 324 ~~e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~ 403 (574)
T smart00638 324 SEEQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAE 403 (574)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhc
Confidence 44567777775432 3344444456667777777666443333457788877777667778899999999999
Q ss_pred ccc----hhHHHHHhhcccc----ccccCc--------chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHH
Q 008797 79 EEE----LGVRVQAIRGLPL----FCKDTP--------EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLT 142 (553)
Q Consensus 79 Ded----~~IR~~aik~Lp~----lck~~~--------e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~ 142 (553)
++. ..+|..|+=++-. .|.+++ +|++.+.+-|.+..+..+..|..+.-+||=.+=....-.+|.
T Consensus 404 ~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~ 483 (574)
T smart00638 404 SPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLE 483 (574)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHH
Confidence 863 3467776655543 677664 344445555555555566677777777766554444433333
No 55
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=80.48 E-value=48 Score=31.07 Aligned_cols=137 Identities=21% Similarity=0.222 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCC---hhhhhhHHHHHHH
Q 008797 232 KELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLP---EERKLDLLKALAE 308 (553)
Q Consensus 232 qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~---~~~kl~lLK~lAe 308 (553)
..++..+.+.+--. +.....+-+++.-+....| .-...+++++.+.+-..++... -.+...+++.++|
T Consensus 35 ~~l~~~i~~~~~~~----~~~~~~ya~L~~~l~~~~~-----~f~~~ll~~~~~~f~~~~e~~~~~~~~~~~~~i~fl~e 105 (200)
T smart00543 35 KYILELIFEKAVEE----PNFIPAYARLCALLNAKNP-----DFGSLLLERLQEEFEKGLESEEESDKQRRLGLVRFLGE 105 (200)
T ss_pred HHHHHHHHHHHHcC----cchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHH
Confidence 66777777664433 2334455666665555443 1224455555544433222211 1356688999999
Q ss_pred hCCCCCchhhhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCcCCcChh
Q 008797 309 ISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFS 388 (553)
Q Consensus 309 ~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg~k~~Tgqpsd~lgeD~~ 388 (553)
+..+ +..... .+++.+...+.......+.-+...|||++..+... |+.+..+ ++ +
T Consensus 106 L~~~-~~i~~~----~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~------------G~~l~~~-------~~-~ 160 (200)
T smart00543 106 LYNF-QVLTSK----IILELLKELLNDLTKLDPPRSDFSVECLLSLLPTC------------GKDLERE-------KS-P 160 (200)
T ss_pred HHHc-ccCcHH----HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHh------------hHHHcCc-------cc-H
Confidence 9654 222222 24444444444332222335678999999999884 4444320 12 5
Q ss_pred hhHHHHHHHHHHHH
Q 008797 389 DCYKDFTERLTTVE 402 (553)
Q Consensus 389 ~~~kdFr~RLqyl~ 402 (553)
+.+++|..+++...
T Consensus 161 ~~~~~~l~~l~~~~ 174 (200)
T smart00543 161 KLLDEILERLQDYL 174 (200)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777776666544
No 56
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=80.26 E-value=14 Score=44.85 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=51.7
Q ss_pred hhhhhHHhccCCCcchHHHHHhhhh-hcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhch
Q 008797 52 AQLIPRFFKFFPDLSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEE 118 (553)
Q Consensus 52 aqfI~kffk~FP~L~e~Ai~a~lDL-cEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd 118 (553)
---|+.+++.||.+.+.-||-++-= .=-=|+.||-+|=.+|-.+..-.|+|.+ .++|.++|-+=+
T Consensus 527 y~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a--~~~L~~lld~~l 592 (1133)
T KOG1943|consen 527 YLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLA--DYVLPPLLDSTL 592 (1133)
T ss_pred HHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhc--ccchhhhhhhhc
Confidence 3468899999999999999988754 3345678999999999999988887654 367888887633
No 57
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=78.42 E-value=2.2 Score=47.02 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=5.8
Q ss_pred HHhhhhhhcccc
Q 008797 16 EFGERLNEAKDK 27 (553)
Q Consensus 16 ~~~~~L~~akdk 27 (553)
.||.+|..+++.
T Consensus 23 qYY~~L~~~P~~ 34 (419)
T KOG0116|consen 23 QYYNVLQNSPSK 34 (419)
T ss_pred HHHHHHhhChHH
Confidence 444555444444
No 58
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=78.42 E-value=12 Score=38.66 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=81.0
Q ss_pred ChhhHHHHHHHhc----CCHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhccccccccCc
Q 008797 30 NVKDYEGIIEAAK----TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP 100 (553)
Q Consensus 30 ~~~~y~~Il~~~k----gs~k~K~LAaqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~ 100 (553)
...+++.++..-+ ...+++-+.+--. ...||.-++- ++.-+.++..+.++.||.+|+..|-.++-+.
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n---~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~- 85 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGN---SAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND- 85 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHh---hccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-
Confidence 4455666666544 3344555554444 3557755543 4567889999999999999999999887765
Q ss_pred chhhhHHHHHHHHHhh---c-hhHHHH-HHHHHHHHHHccc-----hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 101 EYLSKIVDILVQLLAA---E-EIVERD-AVHKALMSLLRQD-----VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 101 e~~~riaDVL~QLLqs---d-d~~E~~-~v~~aL~sllk~D-----~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
|...+|-..+.|++.. . -.++++ +.-+.|.++--.+ -...+..+|.-+. +|++.+|..+++.|.
T Consensus 86 en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~-----~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 86 ENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLS-----SGSEKTKVQVLKVLV 159 (254)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHH-----cCChHHHHHHHHHHH
Confidence 5566666666666552 2 123333 3334444332112 2345677776666 778888888888665
No 59
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=78.30 E-value=92 Score=36.42 Aligned_cols=92 Identities=22% Similarity=0.305 Sum_probs=68.3
Q ss_pred hhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhh----------chhHHHHH
Q 008797 55 IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA----------EEIVERDA 124 (553)
Q Consensus 55 I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqs----------dd~~E~~~ 124 (553)
..-||-.||.+...-|.++.-+----+..+|+.|.==|-.+|+... -.=+-+||-++..+ +.-.=.+-
T Consensus 269 l~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~--~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~F 346 (661)
T KOG2256|consen 269 LVPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFK--STCLDPVLKTMYLAFVRNSKFVTVNTLPLINF 346 (661)
T ss_pred HHHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhCCCCCCcccchhHH
Confidence 4458889999999999999988888888999999999988998642 23355666555543 22234556
Q ss_pred HHHHHHHHHccchHHHHHHHHHhh
Q 008797 125 VHKALMSLLRQDVKASLTALFKHI 148 (553)
Q Consensus 125 v~~aL~sllk~D~k~tL~~lf~qI 148 (553)
.+++|+.|+.+|+...-.--|--|
T Consensus 347 l~~slvEL~~ld~~~~Yq~aF~yI 370 (661)
T KOG2256|consen 347 LQNSLVELLGLDLQVSYQHAFVYI 370 (661)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Confidence 788888898888886666555544
No 60
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.15 E-value=23 Score=43.30 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=68.9
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcch-----hhhHHHHHHHHHhhch-hHHHHHHHHHHHHHHccchHHH
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLAAEE-IVERDAVHKALMSLLRQDVKAS 140 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~-----~~riaDVL~QLLqsdd-~~E~~~v~~aL~sllk~D~k~t 140 (553)
++-++.++-...|.++-||-.|..+|+++..|=.-. ..++-+.|...|-+.+ +.+-.++-.||+.++--.++..
T Consensus 388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~ 467 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI 467 (1075)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH
Confidence 346788899999999999999999999999985444 5556777777776644 4777888899999999999999
Q ss_pred HHHHHHhhc
Q 008797 141 LTALFKHIG 149 (553)
Q Consensus 141 L~~lf~qI~ 149 (553)
|...+.+|.
T Consensus 468 l~pYLd~lm 476 (1075)
T KOG2171|consen 468 LEPYLDGLM 476 (1075)
T ss_pred HHHHHHHHH
Confidence 999988887
No 61
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=76.25 E-value=1.5 Score=39.65 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=7.3
Q ss_pred hhhhcCCCCcc
Q 008797 457 KPLHSKTPSFI 467 (553)
Q Consensus 457 ~~L~~~pPsf~ 467 (553)
-|+++|.|.|+
T Consensus 74 PdmLKnAPmFk 84 (119)
T KOG3172|consen 74 PDMLKNAPMFK 84 (119)
T ss_pred chHhhcCcccc
Confidence 56666666666
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=75.92 E-value=28 Score=33.93 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=67.8
Q ss_pred HHHHHHHhhhhhHHhc----cCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-HHHHHHHHhhchh
Q 008797 45 LKAKQLAAQLIPRFFK----FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-VDILVQLLAAEEI 119 (553)
Q Consensus 45 ~k~K~LAaqfI~kffk----~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ri-aDVL~QLLqsdd~ 119 (553)
.++=+.|.++|...+. +|....+.-+..+++.|-|.-..||..|...|-.+|...+ +.+++ ..+|.+.+.+-.+
T Consensus 67 s~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 67 SKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNP 145 (228)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCH
Confidence 3344566676666664 4666678889999999999999999999999999999875 67887 9999999999999
Q ss_pred HHHHHHHHHHHHHHccch
Q 008797 120 VERDAVHKALMSLLRQDV 137 (553)
Q Consensus 120 ~E~~~v~~aL~sllk~D~ 137 (553)
.-+..+-+.|..++..-+
T Consensus 146 ~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 999999888888888766
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=75.21 E-value=15 Score=40.50 Aligned_cols=86 Identities=22% Similarity=0.211 Sum_probs=64.7
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhh
Q 008797 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (553)
Q Consensus 69 Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI 148 (553)
+++++++..+|.++.||..+++.|-.+-. +...+.|..+|.++++..+-.+=.+| .....||-..|..+++
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------~~a~~~L~~~L~~~~p~vR~aal~al-~~r~~~~~~~L~~~L~-- 157 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG------RQAEPWLEPLLAASEPPGRAIGLAAL-GAHRHDPGPALEAALT-- 157 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc------hHHHHHHHHHhcCCChHHHHHHHHHH-HhhccChHHHHHHHhc--
Confidence 59999999999999999999999976543 47889999999999998776665444 4444566655555543
Q ss_pred ccCCCCCChHHHHHHHHHHHH
Q 008797 149 GSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 149 ~~~~e~~~eE~vREr~lkFl~ 169 (553)
.++-.||...+.-|.
T Consensus 158 ------d~d~~Vra~A~raLG 172 (410)
T TIGR02270 158 ------HEDALVRAAALRALG 172 (410)
T ss_pred ------CCCHHHHHHHHHHHH
Confidence 445678887776553
No 64
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=74.40 E-value=2.7 Score=32.18 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=33.9
Q ss_pred HHHHHhhhhhHHh----ccCCCcchHHHHHhhhhhcccchhHHHHHhhccccc
Q 008797 47 AKQLAAQLIPRFF----KFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLF 95 (553)
Q Consensus 47 ~K~LAaqfI~kff----k~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~l 95 (553)
++.-|+..|...- .....+..+.+..++++.+|++..||..|...|-+|
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4444555554322 223335668889999999999999999999887543
No 65
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=73.71 E-value=41 Score=33.37 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHH
Q 008797 34 YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL 113 (553)
Q Consensus 34 y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QL 113 (553)
|..++.-...=.-+=.+|..++..|+.+.|.+ ...+..++.|++.=+|..||=..-.+.+++ + ...+-+|...+
T Consensus 85 ~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~----~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~-~-~~~l~~~~~~~ 158 (208)
T cd07064 85 LEELITTKSWWDTVDSLAKVVGGILLADYPEF----EPVMDEWSTDENFWLRRTAILHQLKYKEKT-D-TDLLFEIILAN 158 (208)
T ss_pred HHHHHcCCchHHHHHHHHHHHhHHHHhCChhH----HHHHHHHHcCCcHHHHHHHHHHHHHHHHcc-C-HHHHHHHHHHh
Confidence 44444443222445667778888888877654 677889999999999888886655555543 2 34566666677
Q ss_pred HhhchhHHHHHHHHHHHHHHccchHHHHHHHHHh
Q 008797 114 LAAEEIVERDAVHKALMSLLRQDVKASLTALFKH 147 (553)
Q Consensus 114 Lqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~q 147 (553)
+.+++.=...+|-.+|.++-+.||..++.=|-.+
T Consensus 159 ~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~ 192 (208)
T cd07064 159 LGSKEFFIRKAIGWALREYSKTNPDWVRDFVAAH 192 (208)
T ss_pred CCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 7788878888888999999999988766655444
No 66
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=73.60 E-value=22 Score=33.18 Aligned_cols=164 Identities=21% Similarity=0.274 Sum_probs=87.5
Q ss_pred cccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHH
Q 008797 203 DVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNY 282 (553)
Q Consensus 203 dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y 282 (553)
.+|...|..+++-+..+..-. .+. ....+++.|.+.+-... .....+-+++.-+....| +.|...
T Consensus 10 klt~~n~~~~~~~l~~~~~~~--~~~-~~~~i~~~i~~~a~~~~----~~~~~~a~l~~~l~~~~~--------~~f~~~ 74 (209)
T PF02854_consen 10 KLTPSNFESIIDELIKLNWSD--DPE-TLKEIVKLIFEKAVEEP----NFSPLYARLCAALNSRFP--------SEFRSL 74 (209)
T ss_dssp HCSSTTHHHHHHHHHHHHHHS--CHH-HHHHHHHHHHHHHHHSG----GGHHHHHHHHHHHHHHCH--------HHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhc--cHH-HHHHHHHHHhhhhhcCc----hHHHHHHHHHHHHhccch--------hhHHHH
Confidence 345555554444443333321 122 23667788877655443 234455666666666555 344444
Q ss_pred HHhhhccCCCC------C------ChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCCCCCCCCccchHHHHH
Q 008797 283 LNKHIIPVFDK------L------PEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVEC 350 (553)
Q Consensus 283 ~~~~IlP~l~~------l------~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEc 350 (553)
+.+.+.-.|.. . ...+....++.+||+-.+ +......++..++.++....+... +.-+...|||
T Consensus 75 ll~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~-~vv~~~~i~~~l~~ll~~~~~~~~---~~~~~~~ie~ 150 (209)
T PF02854_consen 75 LLNRCQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNF-GVVSEKIIFDILRELLSDGTDECQ---PPPDEENIEC 150 (209)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHTSHHCC---HHTCHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhh-ccccchhHHHHHHHHHhccccccc---CCCcHhHHHH
Confidence 44433333332 1 013577899999999543 222333344434433333332111 4567899999
Q ss_pred HHHHHHHhhhcCchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHH
Q 008797 351 LLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDL 404 (553)
Q Consensus 351 LL~afh~L~~k~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~ 404 (553)
++-.+...|++--.. + +-+..+++|..+++.....
T Consensus 151 ~~~lL~~~G~~l~~~------------------~-~~~~~l~~~~~~~~~~~~~ 185 (209)
T PF02854_consen 151 LCTLLKTCGKKLENS------------------E-ESPKALDEIFERLQKYANS 185 (209)
T ss_dssp HHHHHHHHHHHHHHC------------------H-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC------------------C-CchhHHHHHHHHHHHHHHh
Confidence 999999977664410 0 1156677777666665544
No 67
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=72.97 E-value=54 Score=35.61 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=35.7
Q ss_pred hHHHHHHhhhccCCC-CCCh--hhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCCC
Q 008797 278 KFLNYLNKHIIPVFD-KLPE--ERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLR 336 (553)
Q Consensus 278 ~f~~y~~~~IlP~l~-~l~~--~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~~ 336 (553)
.+..|+.++|+|-|. +... =.|.+.+|.++-+...-+ .+.+..+++.|...+..+
T Consensus 301 ~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~----~~~l~~~~~~l~~~L~~~ 358 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP----KEQLLQIFPLLVNHLQSS 358 (370)
T ss_dssp -HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS
T ss_pred cHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCC
Confidence 789999999999777 2211 256777777777755433 445566777777777653
No 68
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=72.77 E-value=25 Score=36.38 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=49.1
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccccCcchh----------hhHHHHHHHHHh--------hchhHHHHHHHHHHHH
Q 008797 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL----------SKIVDILVQLLA--------AEEIVERDAVHKALMS 131 (553)
Q Consensus 70 i~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~----------~riaDVL~QLLq--------sdd~~E~~~v~~aL~s 131 (553)
+=++|-|.+|.++.+|.+|++-|-.|...-+.-. +=+-|.|..+|- .+...=+.++.-+|.+
T Consensus 121 iP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~ 200 (282)
T PF10521_consen 121 IPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLS 200 (282)
T ss_pred HhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHH
Confidence 4467889999999999999999999987554332 225566777777 4555666777888888
Q ss_pred HHcc
Q 008797 132 LLRQ 135 (553)
Q Consensus 132 llk~ 135 (553)
|++.
T Consensus 201 L~~~ 204 (282)
T PF10521_consen 201 LLKT 204 (282)
T ss_pred HHHh
Confidence 8775
No 69
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=72.45 E-value=3 Score=45.97 Aligned_cols=10 Identities=70% Similarity=1.219 Sum_probs=4.5
Q ss_pred CCCCCCcccC
Q 008797 533 RGGIRGRGRG 542 (553)
Q Consensus 533 ~~g~rgrgr~ 542 (553)
++|+||.|||
T Consensus 396 ~gg~~~~g~~ 405 (419)
T KOG0116|consen 396 RGGGRGDGGG 405 (419)
T ss_pred CCCCcCCCCC
Confidence 4444444443
No 70
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.31 E-value=49 Score=35.60 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=42.6
Q ss_pred HHHhCCCCCchh-hhhhhHHHHHHHHHhcCCCCC--CCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccc
Q 008797 306 LAEISPYTTPQD-SRQILPSVAVLLKKYMPLRKT--GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIV 375 (553)
Q Consensus 306 lAe~s~~~~~~~-a~~~l~~i~~~L~~~mP~~~~--~~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg~k~~ 375 (553)
-+-+.|.|++++ +++=...+..-| .|.|..+. .+|.+-=..|||++....+ +.--+.+.+.-+|-|+
T Consensus 221 p~iLlPlagpee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~kgvYpil 290 (353)
T KOG2973|consen 221 PAILLPLAGPEELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRSKGVYPIL 290 (353)
T ss_pred HHHHhhcCCccccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHhcCchHHH
Confidence 355678888877 555555555555 89997654 4677888999998865543 1222345554555544
No 71
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=72.16 E-value=5.7 Score=36.67 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=40.0
Q ss_pred CHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhccccc
Q 008797 44 SLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLF 95 (553)
Q Consensus 44 s~k~K~LAaqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~~aik~Lp~l 95 (553)
++.+--.|+.=|..|.+++|.-..- |-..++.|+..+|+.||.+|++.+-.+
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6778888999999999999985432 456789999999999999999876443
No 72
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=71.25 E-value=33 Score=35.50 Aligned_cols=63 Identities=22% Similarity=0.261 Sum_probs=52.2
Q ss_pred hhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchH
Q 008797 76 LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (553)
Q Consensus 76 LcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k 138 (553)
-..-.|..||..|++-|-.+|-=++++......++.+.++.++......+=+++..++-....
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc
Confidence 345677899999999999999999999999999999999888777777777777777666543
No 73
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.78 E-value=31 Score=40.39 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=51.5
Q ss_pred HHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHH----HHHhhchhHHHHHH
Q 008797 50 LAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILV----QLLAAEEIVERDAV 125 (553)
Q Consensus 50 LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~----QLLqsdd~~E~~~v 125 (553)
..--++..+=+..|.=.+-|+..+.+||.|.|..||.+|+++|-.+.-. .|+--++. .+|..|+...+.++
T Consensus 180 ~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-----~kL~~~~Y~~A~~~lsD~~e~VR~aA 254 (823)
T KOG2259|consen 180 CFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG-----FKLSKACYSRAVKHLSDDYEDVRKAA 254 (823)
T ss_pred HHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc-----ccccHHHHHHHHHHhcchHHHHHHHH
Confidence 3344566777788888999999999999999999999999999888863 33333443 44444554544444
No 74
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=70.60 E-value=9.9 Score=36.31 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=35.7
Q ss_pred ccCCCCChHHHHHHHHHHHHhhhhh---ccCCc-hhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhh
Q 008797 246 AQFNVSDADHIDRLISCLYMALPFF---LRGAS-GSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQI 321 (553)
Q Consensus 246 ~~f~~sd~d~idrli~cl~~Alp~f---s~~v~-st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~ 321 (553)
..++..+|++-.-+-..+..++..+ ..|.. ....+..+...++-.+..||++.|-+|-+.|-+++.|.+....+.+
T Consensus 69 ~ki~~L~peak~Fv~~li~~~~~l~~~~~~G~~~~~~~lk~~~k~~~~~ykaLs~~ak~dL~k~FP~i~~~~~~~k~~~~ 148 (154)
T PF05823_consen 69 KKIDKLSPEAKAFVKELIAKARSLYAQYSAGEKPDLEELKQLAKKVIDSYKALSPEAKDDLKKNFPIIASFLQNDKFQAL 148 (154)
T ss_dssp HTTTT--HHHHHHHHHHHHHHHHHHHHHHHT----THHHHHHH----HHHHTS-HHHHHHHHHH-TT-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhHHHHHcCCHHHHHHHHHHCccchhhhhhhhhhhc
Confidence 4577777876654444444444443 23332 3445667777888999999999999999999999999877766655
Q ss_pred hHHH
Q 008797 322 LPSV 325 (553)
Q Consensus 322 l~~i 325 (553)
+..+
T Consensus 149 ~~~~ 152 (154)
T PF05823_consen 149 IKKL 152 (154)
T ss_dssp ----
T ss_pred cccc
Confidence 5443
No 75
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=70.59 E-value=1.8e+02 Score=32.33 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=43.6
Q ss_pred hhhcccchhHHHHHhhccccccccCcchhh-----hHHHHHHHHHhhc----hhHHHHHHHHHHHHHHccchHHHHHHHH
Q 008797 75 DLIEEEELGVRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAE----EIVERDAVHKALMSLLRQDVKASLTALF 145 (553)
Q Consensus 75 DLcEDed~~IR~~aik~Lp~lck~~~e~~~-----riaDVL~QLLqsd----d~~E~~~v~~aL~sllk~D~k~tL~~lf 145 (553)
+..++.|..|++.|+|-|-++.=.+|.--. ..++-|+..|... .+.|....--=|.=|+.-........++
T Consensus 39 ~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~ 118 (446)
T PF10165_consen 39 DEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLI 118 (446)
T ss_pred ccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHH
Confidence 334677788999999988877666554311 2445566667665 2555555554455555544454444444
Q ss_pred Hh
Q 008797 146 KH 147 (553)
Q Consensus 146 ~q 147 (553)
.+
T Consensus 119 ~e 120 (446)
T PF10165_consen 119 EE 120 (446)
T ss_pred HH
Confidence 43
No 76
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=69.66 E-value=13 Score=37.00 Aligned_cols=6 Identities=100% Similarity=1.880 Sum_probs=3.1
Q ss_pred CCCCCC
Q 008797 546 RGRGRG 551 (553)
Q Consensus 546 ~gr~~~ 551 (553)
|||+|+
T Consensus 208 rgrgR~ 213 (215)
T KOG3262|consen 208 RGRGRG 213 (215)
T ss_pred CCCCCC
Confidence 555554
No 77
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=69.43 E-value=1.2e+02 Score=34.37 Aligned_cols=86 Identities=21% Similarity=0.265 Sum_probs=53.0
Q ss_pred chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccC--CC--CCChHHHHHHHHHHHHhhcccch
Q 008797 101 EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV--DE--PSTDEFIREKVLSFIRDKVFPLK 176 (553)
Q Consensus 101 e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~--~e--~~~eE~vREr~lkFl~~kl~~l~ 176 (553)
++.+-|+|-|-++=.+|..+|..-+...|..++.-+.-++.+.-|.+|..+ +. .+.++..|+-++.-|..-+..=|
T Consensus 283 ~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 283 DQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred chhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 444556776666666677788887777777777666444444444442211 11 13566788888888887666666
Q ss_pred hhhcCChHHH
Q 008797 177 AELLKPQEEM 186 (553)
Q Consensus 177 ~e~l~~~eE~ 186 (553)
.-+..++|.+
T Consensus 363 ~~l~DstE~a 372 (516)
T KOG2956|consen 363 ARLFDSTEIA 372 (516)
T ss_pred HhhhchHHHH
Confidence 6665554444
No 78
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.14 E-value=1.5e+02 Score=32.20 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=71.7
Q ss_pred HHHHHHhhhhhhccccccChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHH-----hhh-hhcccchhH
Q 008797 12 EKLYEFGERLNEAKDKSQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDA-----HLD-LIEEEELGV 84 (553)
Q Consensus 12 e~LY~~~~~L~~akdk~~~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a-----~lD-LcEDed~~I 84 (553)
+.|=.+.+-+++|-|-..+. -....+...+ +++..+.+||+.|..-+..=|..|+..|+. ++- |--|.+..+
T Consensus 105 d~Le~lve~iDnAndl~~~g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~ 183 (342)
T KOG2160|consen 105 DNLEELVEDIDNANDLISLG-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTV 183 (342)
T ss_pred HHHHHHHHhhhhHHhHhhcc-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchH
Confidence 33444444444554443221 2334444666 779999999999999999999999998874 222 235666678
Q ss_pred HHHHhhccccccccCcchhhh-----HHHHHHHHHhhc
Q 008797 85 RVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAAE 117 (553)
Q Consensus 85 R~~aik~Lp~lck~~~e~~~r-----iaDVL~QLLqsd 117 (553)
|.+|+-++..+-+.++-=+.+ ...+|.-+|++.
T Consensus 184 r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~ 221 (342)
T KOG2160|consen 184 RTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN 221 (342)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC
Confidence 999999999999988643322 456777777773
No 79
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.92 E-value=67 Score=33.23 Aligned_cols=192 Identities=17% Similarity=0.251 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHH--HHHHHHHhhccccCCCCchhHHH
Q 008797 155 STDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEF--RMFMDFLKSLSLFGEKAPTERMK 232 (553)
Q Consensus 155 ~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF--~l~m~lL~sl~~~~~~s~~gr~q 232 (553)
++|+.+|+|.+.+|+.=+..+|++.+.. +|++ .+++-... -|.|.....- .-+-.++ .++.+. .+...
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~-~ev~-~L~~F~~~---rl~D~~~~~~~l~gl~~L~-~~~~~~----~~~~~ 79 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSR-QEVQ-VLLDFFCS---RLDDHACVQPALKGLLALV-KMKNFS----PESAV 79 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccH-HHHH-HHHHHHHH---HhccHhhHHHHHHHHHHHH-hCcCCC----hhhHH
Confidence 5677889999999999888888887743 4443 33333333 3554433221 2222223 334432 23345
Q ss_pred HHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhcc--CCchhhHHHHHHhhhccCCCCCChh--hhhhHHHHHHH
Q 008797 233 ELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLR--GASGSKFLNYLNKHIIPVFDKLPEE--RKLDLLKALAE 308 (553)
Q Consensus 233 eLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~--~v~st~f~~y~~~~IlP~l~~l~~~--~kl~lLK~lAe 308 (553)
.+++.+....+. +.+..++.-.+=+++. ..+.-+.. ..-+..|+.-+++-+-- +.=|.. .=.++++.+..
T Consensus 80 ~i~~~l~~~~~~-q~~~q~~R~~~~~ll~---~l~~~~~~~l~~~~~~fv~~~i~~~~g--EkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 80 KILRSLFQNVDV-QSLPQSTRYAVYQLLD---SLLENHREALQSMGDDFVYGFIQLIDG--EKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred HHHHHHHHhCCh-hhhhHHHHHHHHHHHH---HHHHHhHHHHHhchhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHH
Confidence 666666543332 1121221111111111 11111111 11234565555543221 000111 12244454444
Q ss_pred hCCCCCchhhhhhhHHHHHHHHHhcCC---CCCCCC------ccchHHHHHHHHHHHHhhhc-Cchhhhhc
Q 008797 309 ISPYTTPQDSRQILPSVAVLLKKYMPL---RKTGGE------EMNFTYVECLLYTFHHLAHK-APNATNSL 369 (553)
Q Consensus 309 ~s~~~~~~~a~~~l~~i~~~L~~~mP~---~~~~~~------~l~fs~vEcLL~afh~L~~k-~P~~~~~~ 369 (553)
.-+ ..+..+.+|+.+.-|.|- ||.++| +|.-+.-+|+- +=+.+|.. .|..+.++
T Consensus 154 ~~~------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~~~~p~LleKL 217 (262)
T PF14500_consen 154 EFD------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAPFAFPLLLEKL 217 (262)
T ss_pred hcc------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHHHHHHHHHHHH
Confidence 322 366788999999999998 555443 56666667764 33333322 34444443
No 80
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.91 E-value=1.8e+02 Score=34.72 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=25.8
Q ss_pred HHHHHhcCCHHHHHHHhhhhhHHhccCCCcch
Q 008797 36 GIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSS 67 (553)
Q Consensus 36 ~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e 67 (553)
.||-+....+-+|+=||=-+-+.|+.+||+..
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 55656666678899999999999999998865
No 81
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=67.55 E-value=31 Score=38.97 Aligned_cols=73 Identities=27% Similarity=0.357 Sum_probs=44.3
Q ss_pred HHHHHhhhhhccc---chhHHHHHhhccccccccCcchhhhHHHHHHHHHhh-chhHHHHHHHHHHHHHHccchHHH-HH
Q 008797 68 RAVDAHLDLIEEE---ELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA-EEIVERDAVHKALMSLLRQDVKAS-LT 142 (553)
Q Consensus 68 ~Ai~a~lDLcEDe---d~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqs-dd~~E~~~v~~aL~sllk~D~k~t-L~ 142 (553)
.+++.+.-+++++ +..||.+||.+|..+....| .++-++|.+++.. .++.|+-++ |+..|++.+|-.. |.
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---~~v~~~l~~I~~n~~e~~EvRia--A~~~lm~~~P~~~~l~ 595 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---EKVREILLPIFMNTTEDPEVRIA--AYLILMRCNPSPSVLQ 595 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H---HHHHHHHHHHHH-TTS-HHHHHH--HHHHHHHT---HHHHH
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc---HHHHHHHHHHhcCCCCChhHHHH--HHHHHHhcCCCHHHHH
Confidence 4777777777777 56688888888887755443 3688888887765 444554443 4677777755533 33
Q ss_pred HHH
Q 008797 143 ALF 145 (553)
Q Consensus 143 ~lf 145 (553)
.|.
T Consensus 596 ~i~ 598 (618)
T PF01347_consen 596 RIA 598 (618)
T ss_dssp HHH
T ss_pred HHH
Confidence 343
No 82
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=66.08 E-value=51 Score=38.54 Aligned_cols=260 Identities=17% Similarity=0.206 Sum_probs=133.5
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccc------cccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHH
Q 008797 68 RAVDAHLDLIEEEELGVRVQAIRGLPLF------CKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASL 141 (553)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~~aik~Lp~l------ck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL 141 (553)
.-+...|.+.....++||++|.+-...+ |-+. +.+.+..-||+.-|..|+|..+-.+-+|+.++++..--..+
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~-~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET-KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH-HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 3456677777777888999887644333 4444 45888999999999999999999999999988876221111
Q ss_pred HHHHHhhccCCCC---CChHHHHHHHHHHHHhhcccchhhhcC-----------------ChHHHHHHHHHHHHHHhhhc
Q 008797 142 TALFKHIGSVDEP---STDEFIREKVLSFIRDKVFPLKAELLK-----------------PQEEMERHITDLIKKVLQSL 201 (553)
Q Consensus 142 ~~lf~qI~~~~e~---~~eE~vREr~lkFl~~kl~~l~~e~l~-----------------~~eE~E~~i~~~ikK~~~vL 201 (553)
.-=.++|.+.=.| +-.+.+-+..|+|+-. +....+++.. |++|+.+...+-..- +-
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~-I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~---Is 758 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGT-ICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGC---IS 758 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHH-HHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh---HH
Confidence 1111233221011 1223344555666543 2222333332 233333322221111 11
Q ss_pred ccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHh--hhccccCCC-----CChHHHHHHHH-HHHHhhhhh-cc
Q 008797 202 EDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQ--ADLDAQFNV-----SDADHIDRLIS-CLYMALPFF-LR 272 (553)
Q Consensus 202 ~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eq--a~Ld~~f~~-----sd~d~idrli~-cl~~Alp~f-s~ 272 (553)
+.|-.. +.+--+|+.|+. ++|+|.....+.=. |+-..+|++ +|-++=+-..+ =+-.|+-|| ..
T Consensus 759 ~aiGPq--dvL~~LlnnLkv------qeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 759 RAIGPQ--DVLDILLNNLKV------QERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred hhcCHH--HHHHHHHhcchH------HHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 112222 224445555444 35655443322111 334455553 22222222222 222244443 22
Q ss_pred CCc-hhhHHHHHHhhhccCCCCC--Ch---hh--hhhHHHHHHHhCCCCCchhh-hhhhHHHHHHHHHhcCCCCCCCCcc
Q 008797 273 GAS-GSKFLNYLNKHIIPVFDKL--PE---ER--KLDLLKALAEISPYTTPQDS-RQILPSVAVLLKKYMPLRKTGGEEM 343 (553)
Q Consensus 273 ~v~-st~f~~y~~~~IlP~l~~l--~~---~~--kl~lLK~lAe~s~~~~~~~a-~~~l~~i~~~L~~~mP~~~~~~~~l 343 (553)
-.. |-+|+. .|+|.+++. +. .+ -+.+.+.|+.-++-++.+|+ --+++.++..+++-. |-.
T Consensus 831 ig~~s~dYvy----~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~s-------Phv 899 (975)
T COG5181 831 IGQASLDYVY----SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPS-------PHV 899 (975)
T ss_pred HHHHHHHHHH----HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCC-------cHH
Confidence 111 222221 478888775 22 33 55999999999998888884 334455555444433 446
Q ss_pred chHHHHHH
Q 008797 344 NFTYVECL 351 (553)
Q Consensus 344 ~fs~vEcL 351 (553)
.-+..||+
T Consensus 900 i~~~~Eg~ 907 (975)
T COG5181 900 IQSFDEGM 907 (975)
T ss_pred HHHHHHHH
Confidence 77888886
No 83
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=65.85 E-value=6.9 Score=45.19 Aligned_cols=55 Identities=25% Similarity=0.448 Sum_probs=34.5
Q ss_pred HHHHHhhh---hhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHH
Q 008797 47 AKQLAAQL---IPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDIL 110 (553)
Q Consensus 47 ~K~LAaqf---I~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL 110 (553)
++.||-|. +.+|.+++|.+. +..+....+...+..+++.-|++...+|. ++.|.|
T Consensus 83 TreLa~Qv~~~l~~~~~~~~~i~------v~~~~gG~~~~~q~~~l~~~~~IVVgTPg---rl~d~l 140 (629)
T PRK11634 83 TRELAVQVAEAMTDFSKHMRGVN------VVALYGGQRYDVQLRALRQGPQIVVGTPG---RLLDHL 140 (629)
T ss_pred cHHHHHHHHHHHHHHHhhcCCce------EEEEECCcCHHHHHHHhcCCCCEEEECHH---HHHHHH
Confidence 45566555 555666666532 23334455556777788888999999985 555544
No 84
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.47 E-value=4.6 Score=39.29 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=15.9
Q ss_pred hccHHH-HhhhhhcCCCCccCCCcccccccccc
Q 008797 449 CNNILA-MSKPLHSKTPSFIGDKSVNLSWKEAT 480 (553)
Q Consensus 449 ~~NI~~-li~~L~~~pPsf~~~~~i~lSW~~~~ 480 (553)
|.-|+. =|-.|+.. +-++-+.|+.+|+...
T Consensus 63 caEilKrRipgLhQ~--t~l~~~sv~d~W~p~~ 93 (179)
T KOG2567|consen 63 CAEILKRRIPGLHQV--TRLRYTSVEDVWEPTE 93 (179)
T ss_pred HHHHHhhhCcchhhh--ceeeeeehhhcccccc
Confidence 333433 34455554 2222248899998754
No 85
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=63.60 E-value=2.6e+02 Score=31.65 Aligned_cols=117 Identities=21% Similarity=0.161 Sum_probs=64.9
Q ss_pred ChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccc----hhHHHHHhhccc----ccccc---
Q 008797 30 NVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEE----LGVRVQAIRGLP----LFCKD--- 98 (553)
Q Consensus 30 ~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed----~~IR~~aik~Lp----~lck~--- 98 (553)
..+..+.|++..+...-.-..|++.|......=+.-..+.++.+++||+... ..+|..|+=.+- ..|..
T Consensus 393 T~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~ 472 (618)
T PF01347_consen 393 TNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDS 472 (618)
T ss_dssp SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccc
Confidence 4445555555555433334457777766555444777999999999999653 457777776543 34666
Q ss_pred -------CcchhhhHHHHHHHHHh----hchhHHHHHHHHHHHHHHccchHHHHHHHHHhhc
Q 008797 99 -------TPEYLSKIVDILVQLLA----AEEIVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (553)
Q Consensus 99 -------~~e~~~riaDVL~QLLq----sdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~ 149 (553)
...-..++++.|.+.|. ..+..+..++=+||-.+=.- .++..|...|.
T Consensus 473 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~---~~i~~l~~~i~ 531 (618)
T PF01347_consen 473 AEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP---ESIPVLLPYIE 531 (618)
T ss_dssp --------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G---GGHHHHHTTST
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc---hhhHHHHhHhh
Confidence 23334455555655555 45567778887887766432 35555555453
No 86
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=63.39 E-value=4.4 Score=37.50 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=8.5
Q ss_pred hhcCCCCccCCCcccc
Q 008797 459 LHSKTPSFIGDKSVNL 474 (553)
Q Consensus 459 L~~~pPsf~~~~~i~l 474 (553)
||..|.-|+-.++|.+
T Consensus 53 f~r~pEcYirGttIky 68 (134)
T KOG3293|consen 53 FFRMPECYIRGTTIKY 68 (134)
T ss_pred eeecceeEEecceeEE
Confidence 5566666665444433
No 87
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=60.74 E-value=36 Score=39.91 Aligned_cols=209 Identities=19% Similarity=0.271 Sum_probs=104.8
Q ss_pred chhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHH
Q 008797 117 EEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKK 196 (553)
Q Consensus 117 dd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK 196 (553)
-|+.+-..--++|..++..=|..+ +|..|.+ .--+|.+=+.+.-++.--+..+... .+..|-+..++..|+.
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv---~~~kiLP---~L~~el~n~~~vp~~LP~v~~i~~~--~s~~~~~~~~~p~l~p 356 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARV---LFQKILP---TLVAELVNTKMVPIVLPLVLLIAEG--LSQNEFGPKMLPALKP 356 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHH---HHHhhhh---HHHHHhccccccccccchhhhhhhc--cchhhhhhhhhHHHHH
Confidence 345566666666777777655533 3333331 0001111123332222222222221 2344556667777777
Q ss_pred HhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHH-HHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCc
Q 008797 197 VLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKE-LIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGAS 275 (553)
Q Consensus 197 ~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qe-Lv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~ 275 (553)
++.-.-..+--+| |+..+.+...+++.+++.+ .+.++-. -|+.+|.-.=+++++ .+|-+.....
T Consensus 357 ---i~~~~~~~~~~l~--i~e~mdlL~~Kt~~e~~~~~IlplL~~------S~~~~~~~iQ~~~L~----~lptv~e~iD 421 (700)
T KOG2137|consen 357 ---IYSASDPKQALLF--ILENMDLLKEKTPPEEVKEKILPLLYR------SLEDSDVQIQELALQ----ILPTVAESID 421 (700)
T ss_pred ---HhccCCcccchhh--HHhhHHHHHhhCChHHHHHHHHHHHHH------HhcCcchhhHHHHHH----hhhHHHHhcc
Confidence 4432222222111 2222233334566655443 4454432 233333322233333 3444433332
Q ss_pred hhhHHHHHHhhhccCCCCCC-----hhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHh-cCCCCCCCCccchHHHH
Q 008797 276 GSKFLNYLNKHIIPVFDKLP-----EERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY-MPLRKTGGEEMNFTYVE 349 (553)
Q Consensus 276 st~f~~y~~~~IlP~l~~l~-----~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~-mP~~~~~~~~l~fs~vE 349 (553)
+.++-+.|+|.+..+. ...|.++|-.+|.++ ...|.-.+++.+.-+++.+ .++|. .+=
T Consensus 422 ----~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~~v~d~~lpi~~~~~~~dp~---------iv~ 485 (700)
T KOG2137|consen 422 ----VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKAAVLDELLPILKCIKTRDPA---------IVM 485 (700)
T ss_pred ----HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHhcCCCcH---------HHH
Confidence 6778889999888872 268999999999998 4456666777777777777 44432 233
Q ss_pred HHHHHHHHhhhcCch
Q 008797 350 CLLYTFHHLAHKAPN 364 (553)
Q Consensus 350 cLL~afh~L~~k~P~ 364 (553)
.++-++|.|+-..|+
T Consensus 486 ~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 486 GFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHHHHHhhccc
Confidence 344455555555444
No 88
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.41 E-value=3.7e+02 Score=32.31 Aligned_cols=98 Identities=21% Similarity=0.283 Sum_probs=78.4
Q ss_pred cCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch--hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc---
Q 008797 61 FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY--LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ--- 135 (553)
Q Consensus 61 ~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~--~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~--- 135 (553)
.=|+|=..|.|.+=++.-+.+++||-=|+..+-.+|-..+-+ +++--|...-.|.+| ..+.+.++|+.=|+-|
T Consensus 322 ~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkte--rDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 322 SEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTE--RDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred CcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhch
Confidence 347788899999999999999999999999999988875544 777788888888876 3467788888888877
Q ss_pred -chHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 008797 136 -DVKASLTALFKHIGSVDEPSTDEFIREKVL 165 (553)
Q Consensus 136 -D~k~tL~~lf~qI~~~~e~~~eE~vREr~l 165 (553)
+.|-.+..|+.-|. .-|-.+||.+.
T Consensus 400 ~Nak~IV~elLqYL~-----tAd~sireeiv 425 (938)
T KOG1077|consen 400 SNAKQIVAELLQYLE-----TADYSIREEIV 425 (938)
T ss_pred hhHHHHHHHHHHHHh-----hcchHHHHHHH
Confidence 78888899988887 34556776654
No 89
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=59.79 E-value=11 Score=43.70 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=16.7
Q ss_pred cHHHHhhhhhcCCCCccCCCcc--cccccc
Q 008797 451 NILAMSKPLHSKTPSFIGDKSV--NLSWKE 478 (553)
Q Consensus 451 NI~~li~~L~~~pPsf~~~~~i--~lSW~~ 478 (553)
||.-+|..-..-|..+++...| ++|+-.
T Consensus 503 ~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~ 532 (629)
T PRK11634 503 HIVGAIANEGDISSRYIGNIKLFASHSTIE 532 (629)
T ss_pred HHHHHHHhhcCCChhhCCcEEEeCCceEEE
Confidence 6666666666667777775433 444444
No 90
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=59.70 E-value=15 Score=34.83 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=53.8
Q ss_pred cChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008797 29 QNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (553)
Q Consensus 29 ~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaD 108 (553)
+-.-.|..+|.....|.+.=+=||+|.-|| .++.|+-++++++-||+++.+.|+.=. -..|
T Consensus 5 E~r~~F~~~L~~L~aS~qSi~kaa~fAlk~----~~~~edL~~cIle~le~~~lN~R~nI~---------------~fID 65 (139)
T PF12243_consen 5 EVRMQFTQLLRRLNASQQSIQKAAQFALKN----RDMEEDLWSCILEQLEKENLNTRINIF---------------YFID 65 (139)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHc----cccHHHHHHHHHHHHhccchhhHHHHH---------------HHHH
Confidence 344567778877776666666689998887 899999999999999999999896543 4556
Q ss_pred HHHHHHhhch
Q 008797 109 ILVQLLAAEE 118 (553)
Q Consensus 109 VL~QLLqsdd 118 (553)
.|++.-+...
T Consensus 66 ~l~e~~~~~~ 75 (139)
T PF12243_consen 66 SLCESSQKSK 75 (139)
T ss_pred HHHHHHHhcc
Confidence 6666555554
No 91
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=59.40 E-value=1.3e+02 Score=36.22 Aligned_cols=244 Identities=18% Similarity=0.273 Sum_probs=126.1
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccc------cccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccc------
Q 008797 69 AVDAHLDLIEEEELGVRVQAIRGLPLF------CKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQD------ 136 (553)
Q Consensus 69 Ai~a~lDLcEDed~~IR~~aik~Lp~l------ck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D------ 136 (553)
-+-..|-+...-.+.||.||.+-+..+ |-+. +.+....=||+..|..|+|..+-.+-+|+.+++..-
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee-~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE-KLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH-HHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 344556666777777888887655544 3221 345667777888888899998888888888887653
Q ss_pred -h----HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHH---HHHH---HHHhhhccccc
Q 008797 137 -V----KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHI---TDLI---KKVLQSLEDVT 205 (553)
Q Consensus 137 -~----k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i---~~~i---kK~~~vL~dVT 205 (553)
| -.+|+-++. +-.|.|.|.+|.|+-. +....+|+... .|-.+.- ++++ || .+.--+
T Consensus 879 pPi~dllPrltPILk--------nrheKVqen~IdLvg~-IadrgpE~v~a-REWMRIcfeLlelLkahkK---~iRRaa 945 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILK--------NRHEKVQENCIDLVGT-IADRGPEYVSA-REWMRICFELLELLKAHKK---EIRRAA 945 (1172)
T ss_pred CChhhhcccchHhhh--------hhHHHHHHHHHHHHHH-HHhcCcccCCH-HHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 1 123344433 3346778888887653 22333343322 1211111 1111 12 111122
Q ss_pred HHHH----------HHHHHHHhhccccCCCCchhHHHHHH-----HHHHHhhhccccCCCC-----ChHHHHHHH-HHHH
Q 008797 206 GAEF----------RMFMDFLKSLSLFGEKAPTERMKELI-----GIIEGQADLDAQFNVS-----DADHIDRLI-SCLY 264 (553)
Q Consensus 206 ~eEF----------~l~m~lL~sl~~~~~~s~~gr~qeLv-----~~i~eqa~Ld~~f~~s-----d~d~idrli-~cl~ 264 (553)
.+-| +.+-.+|+.|+. ++|++... .++. +-..+|.+. |-..=+-.. +=+-
T Consensus 946 ~nTfG~IakaIGPqdVLatLlnnLkv------qeRq~RvcTtvaIaIVa---E~c~pFtVLPalmneYrtPe~nVQnGVL 1016 (1172)
T KOG0213|consen 946 VNTFGYIAKAIGPQDVLATLLNNLKV------QERQNRVCTTVAIAIVA---ETCGPFTVLPALMNEYRTPEANVQNGVL 1016 (1172)
T ss_pred HhhhhHHHHhcCHHHHHHHHHhcchH------HHHHhchhhhhhhhhhh---hhcCchhhhHHHHhhccCchhHHHHhHH
Confidence 2222 335555655554 34544332 2333 344455432 000001111 1111
Q ss_pred HhhhhhccCCchhhHHHHHHh-------hhccCCCCC--Ch---hh--hhhHHHHHHHhCCCCCchhh-hhhhHHHHHHH
Q 008797 265 MALPFFLRGASGSKFLNYLNK-------HIIPVFDKL--PE---ER--KLDLLKALAEISPYTTPQDS-RQILPSVAVLL 329 (553)
Q Consensus 265 ~Alp~fs~~v~st~f~~y~~~-------~IlP~l~~l--~~---~~--kl~lLK~lAe~s~~~~~~~a-~~~l~~i~~~L 329 (553)
.|+.| ||+|+-+ .|+|.|++. +. .+ -..+.|.+|.-++-.+-+|+ --+++.|+..+
T Consensus 1017 kalsf---------~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNI 1087 (1172)
T KOG0213|consen 1017 KALSF---------MFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNI 1087 (1172)
T ss_pred HHHHH---------HHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhh
Confidence 23333 3333222 578888775 22 24 45899999998777777774 44455566555
Q ss_pred HHhcCCCCCCCCccchHHHHHH
Q 008797 330 KKYMPLRKTGGEEMNFTYVECL 351 (553)
Q Consensus 330 ~~~mP~~~~~~~~l~fs~vEcL 351 (553)
++.. |-..-+..||+
T Consensus 1088 le~s-------Phviqa~~e~~ 1102 (1172)
T KOG0213|consen 1088 LETS-------PHVIQAFDEAM 1102 (1172)
T ss_pred cCCC-------hHHHHHHHHHH
Confidence 5544 34666777775
No 92
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=59.21 E-value=24 Score=31.37 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=31.6
Q ss_pred HHHHHhhccccccccCcchhhhHHHHHHHHHhhchh
Q 008797 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (553)
Q Consensus 84 IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~ 119 (553)
.-...|+.+..+|.++.++-+.|++++.+-+....+
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~ 46 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPP 46 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 456789999999999999999999999999888666
No 93
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=59.03 E-value=24 Score=30.06 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhh
Q 008797 181 KPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKS 218 (553)
Q Consensus 181 ~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~s 218 (553)
.+.+|++..|-..+.+++.-|.=||.+||+....+|..
T Consensus 24 ~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~ 61 (79)
T PF04380_consen 24 GPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLAR 61 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHH
Confidence 34789999999999998888999999999999888864
No 94
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=58.76 E-value=7.2 Score=42.77 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=6.0
Q ss_pred CChhhhhhHHHHHH
Q 008797 294 LPEERKLDLLKALA 307 (553)
Q Consensus 294 l~~~~kl~lLK~lA 307 (553)
++...+..++..|.
T Consensus 279 ~~~~~R~~~l~~F~ 292 (456)
T PRK10590 279 KSQGARTRALADFK 292 (456)
T ss_pred CCHHHHHHHHHHHH
Confidence 33344444444443
No 95
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=58.76 E-value=2.4e+02 Score=30.32 Aligned_cols=157 Identities=17% Similarity=0.226 Sum_probs=92.0
Q ss_pred HHHHHH-HHHhhhhhhccccccChhhH-HHHHHHhcCCHHHHHHHhhhhhH-Hhc-cCCCcchHHHHHhhhhhcccchh-
Q 008797 9 KQIEKL-YEFGERLNEAKDKSQNVKDY-EGIIEAAKTSLKAKQLAAQLIPR-FFK-FFPDLSSRAVDAHLDLIEEEELG- 83 (553)
Q Consensus 9 ~~ie~L-Y~~~~~L~~akdk~~~~~~y-~~Il~~~kgs~k~K~LAaqfI~k-ffk-~FP~L~e~Ai~a~lDLcEDed~~- 83 (553)
+.++.+ .+|+..+...+.-...-.+| +.+|..+-|..+++.+-..+-+. -.+ .|..|+.---..+.+++.+|-++
T Consensus 55 ~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~~~~~~~~~~L~~~~~~~la~~l~~EhPQ~ 134 (338)
T TIGR00207 55 QQKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSLQTAPGFEFLRKAEPQQIADFIQQEHPQT 134 (338)
T ss_pred HHHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHhcCHHHHHHHHHHHhcccccCchhHHHHCCCHHHHHHHHHccCHHH
Confidence 344444 56666665543333566677 88999998988888765555443 234 37777777777888999999887
Q ss_pred -----------------------HHHHHhhccccccccCcchhhhHHHHHHHHHhhc--hhHHHHHHHHHHHHHHccchH
Q 008797 84 -----------------------VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAE--EIVERDAVHKALMSLLRQDVK 138 (553)
Q Consensus 84 -----------------------IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsd--d~~E~~~v~~aL~sllk~D~k 138 (553)
.|..-+..+-.+-.=+|+-+..|.++|-+.+..- ......- .+.+..+|..=++
T Consensus 135 iAliLs~L~p~~AA~VL~~Lp~~~~~ei~~ria~l~~vs~~~i~~ie~~L~~~~~~~~~~~~~~gG-~~~~a~ILN~~~~ 213 (338)
T TIGR00207 135 IALILSHLDPAQAADILSLFPEEVQAEVARRIATMGRTSPEVVAEVERVLEGKLDSLNSDYTKMGG-VRAVAEIINLMDR 213 (338)
T ss_pred HHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccccccCCh-HHHHHHHHHhCCc
Confidence 3444444444455555666666666666555432 1111111 1334466666666
Q ss_pred HHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 008797 139 ASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (553)
Q Consensus 139 ~tL~~lf~qI~~~~e~~~eE~vREr~lkF 167 (553)
.+-..++..|.. ..|.--+.+|++++.|
T Consensus 214 ~~~~~il~~L~~-~dp~la~~Ir~~mF~F 241 (338)
T TIGR00207 214 KTEKTIITSLEE-FDPELAEEIKKEMFVF 241 (338)
T ss_pred hHHHHHHHHHHH-hCHHHHHHHHHHccCH
Confidence 666677777752 1122223467777666
No 96
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=58.70 E-value=17 Score=41.82 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHh-hhhhccCCchhhHH----HHHHhhhcc---CCCCCChhhhhhHH
Q 008797 232 KELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA-LPFFLRGASGSKFL----NYLNKHIIP---VFDKLPEERKLDLL 303 (553)
Q Consensus 232 qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~A-lp~fs~~v~st~f~----~y~~~~IlP---~l~~l~~~~kl~lL 303 (553)
+.|++++...+..|..|-..+-++...++..++|. ||+..+.+-.+.=+ -|.|..++- .+++ .+...+.-|
T Consensus 517 snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~L~l~dr~~fc~aPvnk~~p~v~~~f~kfa~~~s~-~~~l~~~~l 595 (700)
T KOG0953|consen 517 SNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIELPLKDRYKFCTAPVNKKMPRVCSAFLKFARQYSQ-NEPLTFLWL 595 (700)
T ss_pred HHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCCcchhhhheeecCcccccCchHHHHHHHHHHHHhc-CCcccHHHH
Confidence 44999999988888888888888888888777766 77765543221110 112211111 1110 012333344
Q ss_pred HHHHHhCCCCCchh--hhhhhHHHHHHHHHhc
Q 008797 304 KALAEISPYTTPQD--SRQILPSVAVLLKKYM 333 (553)
Q Consensus 304 K~lAe~s~~~~~~~--a~~~l~~i~~~L~~~m 333 (553)
| .+..-|.|.+.. .-+.|+++|+.|..||
T Consensus 596 ~-~~~~~p~~~p~t~~~L~~LEs~h~il~lYm 626 (700)
T KOG0953|consen 596 K-FNLGWPNKIPKTIYELEDLESLHDILDLYM 626 (700)
T ss_pred H-HhhcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 4 555556554333 3344667777777666
No 97
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=57.66 E-value=32 Score=30.64 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=58.9
Q ss_pred HHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhh--chhHHHHHHHHHHHHHHccchHHHHHHHHHhh
Q 008797 71 DAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA--EEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (553)
Q Consensus 71 ~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqs--dd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI 148 (553)
+.+.|+....+..-|+++|++|-.+.|-...|++..+-=++-+||+ +.+.=...+=++...+++.=....|+.+++|+
T Consensus 18 ~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~ 97 (107)
T PF08064_consen 18 DVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQI 97 (107)
T ss_pred HHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4566777788888999999999999998888888877666777776 45544455556666666664457788888877
Q ss_pred c
Q 008797 149 G 149 (553)
Q Consensus 149 ~ 149 (553)
.
T Consensus 98 ~ 98 (107)
T PF08064_consen 98 F 98 (107)
T ss_pred H
Confidence 5
No 98
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=57.60 E-value=14 Score=28.39 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=23.8
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHccchHH
Q 008797 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (553)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~ 139 (553)
-|+.|.|.++++.++...=.+|.++|+.+|..
T Consensus 10 Nvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e 41 (46)
T PF01465_consen 10 NVLLQFLESREPSEREQLLPVIATLLKFSPEE 41 (46)
T ss_dssp HHHHHHHTTSS---HHHHHHHHHHHTT--HHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHCCCHHH
Confidence 37899999999999998889999999998864
No 99
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=57.37 E-value=58 Score=34.65 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHh
Q 008797 346 TYVECLLYTFHHL 358 (553)
Q Consensus 346 s~vEcLL~afh~L 358 (553)
.-+++.|-||-.|
T Consensus 146 Qa~~aVl~A~~rL 158 (328)
T KOG3080|consen 146 QALSAVLEAFPRL 158 (328)
T ss_pred HHHHHHHHHHHHH
Confidence 3456666666543
No 100
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.97 E-value=2.1e+02 Score=34.83 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=68.8
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhc-cCC---CcchHHHHHhhhhhcccchhHHHHHhhccccccccC----
Q 008797 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFK-FFP---DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT---- 99 (553)
Q Consensus 29 ~~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk-~FP---~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~---- 99 (553)
.+.+-|++-|...+ .-...|--|=+.+.+.|+ +.| ..++.-+...+|..+|+|+=|=..||+++..+|--.
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 56777999999888 557788888888888887 222 246778999999999999999999999999888433
Q ss_pred ----------------cchhhhHHHHHHHHHhh
Q 008797 100 ----------------PEYLSKIVDILVQLLAA 116 (553)
Q Consensus 100 ----------------~e~~~riaDVL~QLLqs 116 (553)
++++=||..+++++++.
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa 836 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQA 836 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHH
Confidence 35556667777777665
No 101
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=56.92 E-value=15 Score=40.35 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=9.4
Q ss_pred HhccCCCcchHHHHHhh
Q 008797 58 FFKFFPDLSSRAVDAHL 74 (553)
Q Consensus 58 ffk~FP~L~e~Ai~a~l 74 (553)
-|+.+-..|.+||.+++
T Consensus 20 g~~~pt~iQ~~ai~~il 36 (456)
T PRK10590 20 GYREPTPIQQQAIPAVL 36 (456)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 44555556666665554
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=56.73 E-value=27 Score=36.13 Aligned_cols=76 Identities=25% Similarity=0.344 Sum_probs=56.8
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHH
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~ 146 (553)
..++..+..+++|.+..||..|+.+|..++-++ .-+++.+.+.++.++...+..+- ..+-.++.......+..
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~---~~l~~~~~~~~~~~l~~ 251 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAAL---LALGEIGDEEAVDALAK 251 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHH---HHhcccCcchhHHHHHH
Confidence 467788888999999999999999999998876 35778888888888877665554 44445555555666666
Q ss_pred hhc
Q 008797 147 HIG 149 (553)
Q Consensus 147 qI~ 149 (553)
.+.
T Consensus 252 ~l~ 254 (335)
T COG1413 252 ALE 254 (335)
T ss_pred HHh
Confidence 665
No 103
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=55.77 E-value=2.6e+02 Score=29.03 Aligned_cols=140 Identities=21% Similarity=0.306 Sum_probs=69.3
Q ss_pred cChhhHHHHHHHhc---CCH----HHHHHHhhhhhHHhcc--CCCcchHHHHH---hhh-hhcccchhHHHHHhhc---c
Q 008797 29 QNVKDYEGIIEAAK---TSL----KAKQLAAQLIPRFFKF--FPDLSSRAVDA---HLD-LIEEEELGVRVQAIRG---L 92 (553)
Q Consensus 29 ~~~~~y~~Il~~~k---gs~----k~K~LAaqfI~kffk~--FP~L~e~Ai~a---~lD-LcEDed~~IR~~aik~---L 92 (553)
.+..-+..|++... .++ ..+++...++.+|.+. ...+++...+. +++ +.+|.+..+|....+. +
T Consensus 139 ~~~~l~~~il~~i~~~l~~~e~~~~I~~~i~~~~~~~~~~~~~~~l~~~i~~~l~~~l~~l~~~~~~~lr~~~~~~l~~~ 218 (367)
T PF04286_consen 139 QHQKLLDRILEKIKEYLKSEETRERIRDLIEEFLEEYLGKSFLDKLAEKIQDELDSLLEKLQEDPDHPLRQEIDQKLREL 218 (367)
T ss_pred chHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCcccHhHHHHHHHHHHH
Confidence 34444555554333 223 3556666666666555 33444444444 333 3336777777655544 3
Q ss_pred ccccccCcchhhhHHHHHHHHHhhchhHHH-HHHHHHHHHHHccch------HHHHHH----HHHhhccCCCCCChHHHH
Q 008797 93 PLFCKDTPEYLSKIVDILVQLLAAEEIVER-DAVHKALMSLLRQDV------KASLTA----LFKHIGSVDEPSTDEFIR 161 (553)
Q Consensus 93 p~lck~~~e~~~riaDVL~QLLqsdd~~E~-~~v~~aL~sllk~D~------k~tL~~----lf~qI~~~~e~~~eE~vR 161 (553)
..--..+|++..++..+.-++|......+. ..+...+...+..+. ...+.. +.+.+. +++.++
T Consensus 219 i~~L~~d~~~~~~i~~~~~~~l~~~~~~~~~~~l~~~l~~~i~~~l~~~~~i~~~i~~~l~~~~~~l~------~~~~l~ 292 (367)
T PF04286_consen 219 IERLLTDPELREKIEELKDKLLSELILEEFLEELWDSLREWIKEDLSREEFIEQIISELLEELIDKLK------EDPELR 292 (367)
T ss_pred HHHHhcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHh------cCHHHH
Confidence 333334556777777777776654332221 112223333332222 122233 334442 337788
Q ss_pred HHHHHHHHhhccc
Q 008797 162 EKVLSFIRDKVFP 174 (553)
Q Consensus 162 Er~lkFl~~kl~~ 174 (553)
+++..|+...+..
T Consensus 293 ~~i~~~i~~~l~~ 305 (367)
T PF04286_consen 293 EKINRFIENLLER 305 (367)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876644
No 104
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=55.70 E-value=2.1e+02 Score=34.46 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=86.6
Q ss_pred HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhcc
Q 008797 210 RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIP 289 (553)
Q Consensus 210 ~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP 289 (553)
..+.++|.++|.|.|+.+. .-.+.+|+.+|++.+.-.+.-.| ++.. .-+.| .+++++
T Consensus 432 ~Ai~ella~~pvYRTY~~~-----------------~G~~~~d~~~i~~~~~~ak~~~~----~~~~-~~~~~-l~~~l~ 488 (889)
T COG3280 432 RALAELLAAFPVYRTYADY-----------------EGIGASDPCILREAVEEAKALAP----GLDL-IAAAF-LSRVLG 488 (889)
T ss_pred HHHHHHHHhCcchhcccCc-----------------cCCCcccHHHHHHHHHHHhhcCC----ccCh-HHHHH-HHHhcC
Confidence 6688889999999877654 22345677777766664443333 1111 11222 234443
Q ss_pred CCCCCChhhhhhH--HHHHHHhCCCCCchhh---hhhhHHHHHHHHH--hcCCCCCCCCccchHHHHHHHHHHHHhhhc-
Q 008797 290 VFDKLPEERKLDL--LKALAEISPYTTPQDS---RQILPSVAVLLKK--YMPLRKTGGEEMNFTYVECLLYTFHHLAHK- 361 (553)
Q Consensus 290 ~l~~l~~~~kl~l--LK~lAe~s~~~~~~~a---~~~l~~i~~~L~~--~mP~~~~~~~~l~fs~vEcLL~afh~L~~k- 361 (553)
.+.+.+++++. +--|.++ |++..| ++..=..|.-|+. .+...|. -+-+|. =-||+.+..
T Consensus 489 --ge~~~~~~~~~~f~~RfQQl---sgpv~AK~VEDT~fYr~~rLlSlNEVG~dP~---~F~~s~-----~~FH~~~~~R 555 (889)
T COG3280 489 --GEPAGDRELRAEFAVRFQQL---SGPVMAKAVEDTTFYRYARLLSLNEVGGDPR---RFGVSA-----AEFHHAMATR 555 (889)
T ss_pred --CCCchhhHHHHHHHHHHHHh---ccHHHhhhhhhhhhhHHhhhhhHhhccCCch---hcCCCH-----HHHHHHHHHH
Confidence 22223444443 5555554 555443 3333445555543 3433331 133333 248887665
Q ss_pred ---CchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008797 362 ---APNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQ 414 (553)
Q Consensus 362 ---~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikkl~~ 414 (553)
-|..|+.. -|. | ..+=+|-|+||..|.+.=+.+-..+..
T Consensus 556 a~~wP~am~at-----sTH--------D-TKRGED~RARl~vLSEiP~~W~e~v~~ 597 (889)
T COG3280 556 ARLWPHAMLAT-----STH--------D-TKRGEDVRARLNVLSEIPQEWAEFVNR 597 (889)
T ss_pred HhcCchhhhcc-----ccc--------c-cccchhHHHHHHHhhcChHHHHHHHHH
Confidence 48887652 122 4 577789999999999998887776653
No 105
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=55.25 E-value=12 Score=34.06 Aligned_cols=10 Identities=70% Similarity=1.328 Sum_probs=3.9
Q ss_pred CcccCCCCCC
Q 008797 538 GRGRGWGARG 547 (553)
Q Consensus 538 grgr~~g~~g 547 (553)
+||||.|+||
T Consensus 103 ~~grg~g~rg 112 (119)
T KOG3172|consen 103 ARGRGRGGRG 112 (119)
T ss_pred ccCCCCCCCC
Confidence 3333334433
No 106
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=54.70 E-value=97 Score=32.17 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=85.7
Q ss_pred HHHHHHhhhhhhccccccChhhHHHHHH-Hhc-CCHHHHHHHhhhhhHHhccC-CCcchHHHHHhhhhhcccchhHHHHH
Q 008797 12 EKLYEFGERLNEAKDKSQNVKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFF-PDLSSRAVDAHLDLIEEEELGVRVQA 88 (553)
Q Consensus 12 e~LY~~~~~L~~akdk~~~~~~y~~Il~-~~k-gs~k~K~LAaqfI~kffk~F-P~L~e~Ai~a~lDLcEDed~~IR~~a 88 (553)
.+..+.++.|+..-+..+. ....+||. -++ .-...+...+|.++-+-.+| |++.-+++.-++-|.+..-..+|.+.
T Consensus 130 ~~~~~~A~~La~~a~~~~~-~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 130 QECIEIAEALAQVAEAQGL-PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 5667788888877654333 34555555 344 33667788888887777755 99999999999999999999999988
Q ss_pred hhccccccc---cCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHH
Q 008797 89 IRGLPLFCK---DTPEYLSKIVDILVQLLAAEEIVERDAVHKALMS 131 (553)
Q Consensus 89 ik~Lp~lck---~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~s 131 (553)
++=|-.+-. -..-+.+.+.-+|.++||||--.|..-|-+..++
T Consensus 209 L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 209 LQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHHHHHHHHHHHh
Confidence 765533322 2222566677788999999999887777655554
No 107
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.51 E-value=1.4e+02 Score=34.23 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhhhHHh-----ccCCCcchHHHHHh-----------------------hhhhcccchhHH
Q 008797 34 YEGIIEAAKTSLKAKQLAAQLIPRFF-----KFFPDLSSRAVDAH-----------------------LDLIEEEELGVR 85 (553)
Q Consensus 34 y~~Il~~~kgs~k~K~LAaqfI~kff-----k~FP~L~e~Ai~a~-----------------------lDLcEDed~~IR 85 (553)
+..++.--+..+-..-+-++.||+|- ..+|.++.+|--|+ +.|....+..||
T Consensus 90 ~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~ 169 (514)
T KOG0166|consen 90 FRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVR 169 (514)
T ss_pred HHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHH
Confidence 34444333333444555556666653 23366666665443 334445555566
Q ss_pred HHHhhccccccccCcchhhh-----HHHHHHHHHhhchh-HHHHHHHHHHHHHHcc
Q 008797 86 VQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAAEEI-VERDAVHKALMSLLRQ 135 (553)
Q Consensus 86 ~~aik~Lp~lck~~~e~~~r-----iaDVL~QLLqsdd~-~E~~~v~~aL~sllk~ 135 (553)
-||+=+|-.+..|.|.+-.- +.+-|+++++..++ .=+-.+.++|..|.+.
T Consensus 170 eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 170 EQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred HHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 66666666666666655221 44556666666655 2222244444444443
No 108
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=54.43 E-value=1.4e+02 Score=30.15 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=50.9
Q ss_pred hhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHH
Q 008797 76 LIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (553)
Q Consensus 76 LcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~ 139 (553)
+-++.++.+....++.||.+|+.+.+.++-+..+|+.|..+....=..+...-+..+++.+++.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~ 72 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH 72 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH
Confidence 7788999999999999999999875667779999998877766444456666667777777765
No 109
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=54.06 E-value=6.8 Score=35.60 Aligned_cols=16 Identities=69% Similarity=1.120 Sum_probs=9.6
Q ss_pred CCCCCCCCcccCCCCCC
Q 008797 531 GGRGGIRGRGRGWGARG 547 (553)
Q Consensus 531 ~~~~g~rgrgr~~g~~g 547 (553)
.||+.+|||||| ++||
T Consensus 94 ~~rgrgrg~Grg-~~~g 109 (109)
T KOG3428|consen 94 VGRGRGRGRGRG-RGRG 109 (109)
T ss_pred cccccccccccC-CCCC
Confidence 456666666776 5554
No 110
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=54.05 E-value=1.9e+02 Score=29.90 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=90.6
Q ss_pred hhHHHHH-HHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCc---------
Q 008797 32 KDYEGII-EAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP--------- 100 (553)
Q Consensus 32 ~~y~~Il-~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~--------- 100 (553)
.-+..|| -+++ .++..+.+|=.-+.-|==.-++++.+.+.-++...+.++..||+.|++.|-++..-..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 3455555 4666 6677777777776666666667777777766666666788899999988876654321
Q ss_pred ----chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc---ch-HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 101 ----EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DV-KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 101 ----e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---D~-k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
.....+.++|...|.++++.-..++=.+|.-|+-. ++ ...|..|+-.--++.. .++..+|.-+=-|+..
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t-~~~~~LrQ~L~~Ffp~ 182 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPST-EDNQRLRQCLSVFFPV 182 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHH
Confidence 12346889999999999888888888888877755 33 5566665544332222 2233566655556554
No 111
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=53.64 E-value=8.9 Score=27.79 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.1
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccc
Q 008797 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCK 97 (553)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~~aik~Lp~lck 97 (553)
-++..+++|..+.|..||.+|.-.|-.+|+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 467888999999999999999988877763
No 112
>KOG4501 consensus Transcription coactivator complex, P100 component [Transcription]
Probab=53.18 E-value=9.1 Score=43.43 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=38.8
Q ss_pred cChhhHHHHHHHhc-C---------CHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhcccccccc
Q 008797 29 QNVKDYEGIIEAAK-T---------SLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD 98 (553)
Q Consensus 29 ~~~~~y~~Il~~~k-g---------s~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~ 98 (553)
.|.+.|+++++.+- | +...=+=-|+|+.-.+..|===..+-++-++-+-+-.-+..| |.+-.+.+-
T Consensus 110 ~~~Dl~k~l~d~V~~~v~rl~t~kes~dhfISP~~fg~~ly~n~l~~~p~lldllV~~gd~n~plL~----~~f~~~f~q 185 (707)
T KOG4501|consen 110 LHSDLLKELMDFVNDGVVRLDTFKESYDHFISPAVFGLALYVNTLYGSPELLDLLVRLGDSNLPLLH----RGFQVLFKQ 185 (707)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccccCHHHHHHHhhhhhhcCcHHHHHHHHHhcccCcHHHH----HHHHHHhhc
Confidence 46777877777654 1 111112335566555555533222222222222222222233 233345566
Q ss_pred CcchhhhHHHHHHHHH
Q 008797 99 TPEYLSKIVDILVQLL 114 (553)
Q Consensus 99 ~~e~~~riaDVL~QLL 114 (553)
+|||.+.+-++|.-++
T Consensus 186 Qpey~~dL~e~l~~~~ 201 (707)
T KOG4501|consen 186 QPEYHDDLSEILTSLN 201 (707)
T ss_pred CchhhhhHHHHHHHHH
Confidence 6777777777765444
No 113
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=53.16 E-value=1.9e+02 Score=28.04 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=84.6
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-HHHHH--
Q 008797 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-IVDIL-- 110 (553)
Q Consensus 35 ~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r-iaDVL-- 110 (553)
..||+..- .+.+.-.+|-++|.--.+.==--=-+++-+++.|.-|.++.||..|++-+-.++...+.++.. ..+-.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~ 90 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRL 90 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666555 667777777777766665433333567888888999999999999999999998888777544 44433
Q ss_pred ---HHH-Hhhchh-HH---HHHHHHHHHHHHcc---chHHHHHHHHHhhccCCCC--CChHHHHHHHHHHHHhhcccchh
Q 008797 111 ---VQL-LAAEEI-VE---RDAVHKALMSLLRQ---DVKASLTALFKHIGSVDEP--STDEFIREKVLSFIRDKVFPLKA 177 (553)
Q Consensus 111 ---~QL-Lqsdd~-~E---~~~v~~aL~sllk~---D~k~tL~~lf~qI~~~~e~--~~eE~vREr~lkFl~~kl~~l~~ 177 (553)
.|. +..+.. .. ....-..|-++++. .-+.-+.+|++........ .++..-.-..+.|+++.|..+|-
T Consensus 91 af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA~l~y 170 (187)
T PF12830_consen 91 AFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENLATLPY 170 (187)
T ss_pred HHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHhcCCC
Confidence 122 222222 11 55555666666662 2233444444444321100 11122334566778877777764
Q ss_pred hh
Q 008797 178 EL 179 (553)
Q Consensus 178 e~ 179 (553)
..
T Consensus 171 ~~ 172 (187)
T PF12830_consen 171 QT 172 (187)
T ss_pred CC
Confidence 33
No 114
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=53.11 E-value=2.9e+02 Score=31.70 Aligned_cols=193 Identities=15% Similarity=0.169 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChH--HHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHH
Q 008797 119 IVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDE--FIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKK 196 (553)
Q Consensus 119 ~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE--~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK 196 (553)
......|++||.++.+-|+. ....|..++..+.+..+.. ..-...|+=|..-+-.|... .+..|...++-
T Consensus 10 ~~~~~~V~~AL~~~~~Gd~~-~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~-------~~~LV~ail~~ 81 (563)
T PF05327_consen 10 EMYKSFVRSALESHEKGDSS-QYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS-------CKQLVEAILSL 81 (563)
T ss_dssp HHHHHHHHHHHHHHHTT--H-HHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC-------CHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHhcCCHH-HHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHcC
Confidence 35567889999999877553 6667777773222222221 11233333333333333221 22222222211
Q ss_pred HhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHh----hhccccCC----CCChHHHHHHHHHHHHhhh
Q 008797 197 VLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQ----ADLDAQFN----VSDADHIDRLISCLYMALP 268 (553)
Q Consensus 197 ~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eq----a~Ld~~f~----~sd~d~idrli~cl~~Alp 268 (553)
.--....+-...+++++..|=..++ ......+.++++. -......+ ....+..+|+...++.
T Consensus 82 ---~W~~~~~~~v~~y~~Fl~~Lvsa~~----~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~--- 151 (563)
T PF05327_consen 82 ---NWLGRDEDFVEAYIQFLINLVSAQP----KYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQK--- 151 (563)
T ss_dssp ---TGGGS-HHHHHHHHHHHHHHHHH-G----GGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHH---
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHH---
Confidence 1113333222345666655544431 1234555655543 11111111 1122233445444444
Q ss_pred hhccCCc-hhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHh
Q 008797 269 FFLRGAS-GSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKY 332 (553)
Q Consensus 269 ~fs~~v~-st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~ 332 (553)
+-+-++ +..++.=+..+-+|+.. -|......-++.+-.++.|| +.-...++..|.+.|.+.
T Consensus 152 -Il~lvP~s~~~L~~~l~~~FP~~~-~~~~~~~~Yv~NlL~l~~Y~-P~L~~~Il~lIi~rLi~i 213 (563)
T PF05327_consen 152 -ILRLVPTSPSFLIPILVQNFPHKR-KSKDEHVNYVRNLLRLTEYC-PELRSDILSLIIERLIKI 213 (563)
T ss_dssp -HHHH-GGGHHHHHHHHHHTS--TT-S-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHHHH
T ss_pred -HHHHcCCCHHHHHHHHHHcCcCCC-CChHHHHHHHHHHHHHHcch-HHHHHHHHHHHHHHHHHH
Confidence 434444 35555666668889875 35567788999999999999 555667888887777653
No 115
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=51.83 E-value=75 Score=37.41 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=52.3
Q ss_pred HHHHHhhccccccccCcchhhhHHHHH--HHHHhhchhHH--HHHHHHHHHHHHc-cchHHHHHHHHHhhccCCCCCChH
Q 008797 84 VRVQAIRGLPLFCKDTPEYLSKIVDIL--VQLLAAEEIVE--RDAVHKALMSLLR-QDVKASLTALFKHIGSVDEPSTDE 158 (553)
Q Consensus 84 IR~~aik~Lp~lck~~~e~~~riaDVL--~QLLqsdd~~E--~~~v~~aL~sllk-~D~k~tL~~lf~qI~~~~e~~~eE 158 (553)
=|++-.|=||.+|.+- ....=+++|| ++++....+.. -..+.-+|..+++ .||+-++-=||.....--+--..|
T Consensus 306 ~rv~~~kiLP~L~~el-~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e 384 (700)
T KOG2137|consen 306 ARVLFQKILPTLVAEL-VNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE 384 (700)
T ss_pred HHHHHHhhhhHHHHHh-ccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH
Confidence 3888888899999742 1112255555 44444444433 4556677777777 688777776666652111112345
Q ss_pred HHHHHHHHHHHhhccc
Q 008797 159 FIREKVLSFIRDKVFP 174 (553)
Q Consensus 159 ~vREr~lkFl~~kl~~ 174 (553)
.+.+.++.+|..-+..
T Consensus 385 ~~~~~IlplL~~S~~~ 400 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLED 400 (700)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5666666666655544
No 116
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=50.85 E-value=54 Score=28.72 Aligned_cols=82 Identities=16% Similarity=0.249 Sum_probs=53.9
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhhHHhccC---CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH
Q 008797 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (553)
Q Consensus 32 ~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~F---P~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ria 107 (553)
+.|+.++.-.. +-+..+--+=..+.+-++.= ....+..++-++...+|+|+=|=..||++|..+|.-.|+ ++.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---~vl 79 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---EVL 79 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---HHH
Confidence 34555555444 33444444434444444332 244456677888899999999999999999999987663 577
Q ss_pred HHHHHHHhh
Q 008797 108 DILVQLLAA 116 (553)
Q Consensus 108 DVL~QLLqs 116 (553)
+.|++-...
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 777765544
No 117
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=50.33 E-value=10 Score=35.24 Aligned_cols=25 Identities=20% Similarity=0.574 Sum_probs=15.0
Q ss_pred hccHHHH--hhhhhcCCCCccCCCcccccccc
Q 008797 449 CNNILAM--SKPLHSKTPSFIGDKSVNLSWKE 478 (553)
Q Consensus 449 ~~NI~~l--i~~L~~~pPsf~~~~~i~lSW~~ 478 (553)
+.|+.++ .+.|.+. -|. .-++||..
T Consensus 38 vpNL~Vik~mqSL~Sr--g~V---ke~f~Wrh 64 (124)
T PTZ00034 38 VPNLHVMMLMRSLKSR--GLV---KEQFAWQH 64 (124)
T ss_pred CccHHHHHHHHccccC--Cce---EEEEeeEE
Confidence 4454443 4666664 344 67889987
No 118
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.10 E-value=66 Score=29.11 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=35.8
Q ss_pred hhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhh
Q 008797 176 KAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKS 218 (553)
Q Consensus 176 ~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~s 218 (553)
+...--+.+|+|..+-..+...++.|.=||.|||+.-+.+|-.
T Consensus 28 a~~~~~~~~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~r 70 (103)
T COG2960 28 AGAAQEVRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLR 70 (103)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 4444456789999998888888889999999999999998864
No 119
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=49.74 E-value=62 Score=35.73 Aligned_cols=102 Identities=13% Similarity=-0.000 Sum_probs=69.5
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH
Q 008797 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (553)
Q Consensus 29 ~~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ria 107 (553)
........++.+.+ .++.....+..-... + ..++...++.+.+|+|..||.+|++.|-.++.. +.++.
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~--r-----~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--~a~~~-- 182 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGA--H-----RHDPGPALEAALTHEDALVRAAALRALGELPRR--LSEST-- 182 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHh--h-----ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--cchHH--
Confidence 35555677778777 667777766655544 1 223455666667799999999999999998864 44444
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHH
Q 008797 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (553)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~ 146 (553)
|..++++++++++..+-.+|..+ .. ...+..+..
T Consensus 183 --L~~al~d~~~~VR~aA~~al~~l-G~--~~A~~~l~~ 216 (410)
T TIGR02270 183 --LRLYLRDSDPEVRFAALEAGLLA-GS--RLAWGVCRR 216 (410)
T ss_pred --HHHHHcCCCHHHHHHHHHHHHHc-CC--HhHHHHHHH
Confidence 56779999999998888777333 22 444444443
No 120
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=48.80 E-value=3.1e+02 Score=30.24 Aligned_cols=239 Identities=17% Similarity=0.220 Sum_probs=139.0
Q ss_pred HHHHhhhhhhccccccChhhHHHHHH-Hhc-CCHHHHHHHhhhhhHHhccCCC--cc-------hHHHHHhhhhhcccch
Q 008797 14 LYEFGERLNEAKDKSQNVKDYEGIIE-AAK-TSLKAKQLAAQLIPRFFKFFPD--LS-------SRAVDAHLDLIEEEEL 82 (553)
Q Consensus 14 LY~~~~~L~~akdk~~~~~~y~~Il~-~~k-gs~k~K~LAaqfI~kffk~FP~--L~-------e~Ai~a~lDLcEDed~ 82 (553)
+-.+-++|=.|+...--...|.--|. |.+ .+..+|.||..-|.+...+--. .. .+-+.-++|.+-.+|-
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 56677788778777544444544443 455 7889999999999888765441 11 1223346788888888
Q ss_pred hHHHHHhhccccccccCcchhhhHHHHHHHHHhhch--------------hHHHHHHHHHHHHHHccchHH----HHHHH
Q 008797 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEE--------------IVERDAVHKALMSLLRQDVKA----SLTAL 144 (553)
Q Consensus 83 ~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd--------------~~E~~~v~~aL~sllk~D~k~----tL~~l 144 (553)
.|-+.||+.|..+..- -|-|.-+.-|+- ...+--|-.-++.+++..|.. +-+||
T Consensus 143 eVAkAAiesikrialf--------paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGL 214 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALF--------PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGL 214 (524)
T ss_pred HHHHHHHHHHHHHHhc--------HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhH
Confidence 9999999988877652 233333333321 123344455567777776543 45788
Q ss_pred HHhhccCCCCCChHHHHHHHHHHHHhhcccc-hhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHH---H---HHHh
Q 008797 145 FKHIGSVDEPSTDEFIREKVLSFIRDKVFPL-KAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMF---M---DFLK 217 (553)
Q Consensus 145 f~qI~~~~e~~~eE~vREr~lkFl~~kl~~l-~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~---m---~lL~ 217 (553)
++++.....+.+|-.||-.||....+=+-.- ..+++ .++-++++|.. +..--+..-|..| | .+++
T Consensus 215 ldlLeaElkGteDtLVianciElvteLaeteHgrefl-----aQeglIdlicn---IIsGadsdPfekfralmgfgkffg 286 (524)
T KOG4413|consen 215 LDLLEAELKGTEDTLVIANCIELVTELAETEHGREFL-----AQEGLIDLICN---IISGADSDPFEKFRALMGFGKFFG 286 (524)
T ss_pred HHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhc-----chhhHHHHHHH---HhhCCCCCcHHHHHHHHHHHHHhc
Confidence 8888743334444457999998766533222 33343 25566778777 6655555555544 2 3444
Q ss_pred hccccCCCCchhHHHHHHHHHHHhhhccccCC---CCChHHHHHHHHHHHHhhhhhccCCchhhH
Q 008797 218 SLSLFGEKAPTERMKELIGIIEGQADLDAQFN---VSDADHIDRLISCLYMALPFFLRGASGSKF 279 (553)
Q Consensus 218 sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~---~sd~d~idrli~cl~~Alp~fs~~v~st~f 279 (553)
.+.+|+ +++ +..++.+.- -.|..|. ..|+|.+.-.|. |+-.+.+++.+...
T Consensus 287 keaimd-vse----eaicealii--aidgsfEmiEmnDpdaieaAiD----alGilGSnteGadl 340 (524)
T KOG4413|consen 287 KEAIMD-VSE----EAICEALII--AIDGSFEMIEMNDPDAIEAAID----ALGILGSNTEGADL 340 (524)
T ss_pred chHHhh-cCH----HHHHHHHHH--HHHhhHHhhhcCCchHHHHHHH----HHHhccCCcchhHH
Confidence 444553 232 222222211 1223333 467887777666 66666666655444
No 121
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=47.67 E-value=1.2e+02 Score=28.65 Aligned_cols=120 Identities=24% Similarity=0.310 Sum_probs=72.8
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHH
Q 008797 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALF 145 (553)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf 145 (553)
+++--+.+++|+-+.|+.|++.|++.|-..-. .|+.+-.|-|..||... ..+..|.++...+..++
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L~~Lldd~------~frdeL~~f~~~~~~~~----- 80 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNLENLLDDK------TFRDELTTFNLSDESSV----- 80 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHHHHHcCcc------hHHHHHHhhcccCCcCC-----
Confidence 56778889999999999999999999988643 47888889999888643 22223333222221111
Q ss_pred HhhccCCCCCChHHHHHHHH----HHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHh
Q 008797 146 KHIGSVDEPSTDEFIREKVL----SFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLK 217 (553)
Q Consensus 146 ~qI~~~~e~~~eE~vREr~l----kFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~ 217 (553)
| ++.=|+.++ .-|-.||..-+..-.+ ....+.. | +..|...+.+|+..|++++-
T Consensus 81 --I--------~~ehR~~l~pvvlRILygk~~~~~~~~~~--~~~rR~a---I---L~~L~~l~~~El~~Fl~l~~ 138 (141)
T PF07539_consen 81 --I--------EEEHRPELMPVVLRILYGKMQSRKGSGSK--KASRRAA---I---LRFLAGLSEEELGLFLDLML 138 (141)
T ss_pred --C--------CHHHHhHHHHHHHHHHHHHHhhcCCCCCc--chHHHHH---H---HHHHhCCCHHHHHHHHHHHh
Confidence 1 123344444 4445566554332221 1122211 2 34677888999999988763
No 122
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=46.84 E-value=40 Score=23.16 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.2
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHc
Q 008797 107 VDILVQLLAAEEIVERDAVHKALMSLLR 134 (553)
Q Consensus 107 aDVL~QLLqsdd~~E~~~v~~aL~sllk 134 (553)
...|.|+|+++++..+.++-.+|..+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999888764
No 123
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.25 E-value=1.8e+02 Score=33.79 Aligned_cols=213 Identities=18% Similarity=0.238 Sum_probs=124.8
Q ss_pred HHhhhhhhccccc--cChhhHH-HHHHHhc-CCHHHHHHHhhhhhHHhc---cCCCc--chHHHHHhhhhhcccchhHHH
Q 008797 16 EFGERLNEAKDKS--QNVKDYE-GIIEAAK-TSLKAKQLAAQLIPRFFK---FFPDL--SSRAVDAHLDLIEEEELGVRV 86 (553)
Q Consensus 16 ~~~~~L~~akdk~--~~~~~y~-~Il~~~k-gs~k~K~LAaqfI~kffk---~FP~L--~e~Ai~a~lDLcEDed~~IR~ 86 (553)
+.-..|+..+|-. -+-.++. +++.-.. .++...+++.-.+..|-+ .=|+- -++-|+.+.+=.-..++-|+.
T Consensus 189 ~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~ 268 (675)
T KOG0212|consen 189 SWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQL 268 (675)
T ss_pred HHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHH
Confidence 3344555555542 2333322 2233222 556666677766666643 22332 234566666666677788998
Q ss_pred HHhhccccccccCc-chhhhHHHHHHHHHhh---chh---HHHHHH-HHHHHHHHcc-------chHHHHHHHHHhhccC
Q 008797 87 QAIRGLPLFCKDTP-EYLSKIVDILVQLLAA---EEI---VERDAV-HKALMSLLRQ-------DVKASLTALFKHIGSV 151 (553)
Q Consensus 87 ~aik~Lp~lck~~~-e~~~riaDVL~QLLqs---dd~---~E~~~v-~~aL~sllk~-------D~k~tL~~lf~qI~~~ 151 (553)
.||.=|-.|.+-.+ +.+.-.++||+-+|-. .++ .|..+. +..|+.++.. |...++.++-.++.
T Consensus 269 ~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~-- 346 (675)
T KOG0212|consen 269 KALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLS-- 346 (675)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhh--
Confidence 88888877766543 4466688888777754 222 344444 4467777765 55568888888887
Q ss_pred CCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhH-
Q 008797 152 DEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTER- 230 (553)
Q Consensus 152 ~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr- 230 (553)
.+-+..|-.++++|..=....|.+++.- -.-|..-.-+ .|.|-+.+=..+-.+++.++-.-+ .++.=|
T Consensus 347 ---~~~~~tri~~L~Wi~~l~~~~p~ql~~h----~~~if~tLL~---tLsd~sd~vvl~~L~lla~i~~s~-~~~~~~~ 415 (675)
T KOG0212|consen 347 ---DDREETRIAVLNWIILLYHKAPGQLLVH----NDSIFLTLLK---TLSDRSDEVVLLALSLLASICSSS-NSPNLRK 415 (675)
T ss_pred ---cchHHHHHHHHHHHHHHHhhCcchhhhh----ccHHHHHHHH---hhcCchhHHHHHHHHHHHHHhcCc-ccccHHH
Confidence 7778899999999998666677777642 2222333333 677776654444455555433322 122212
Q ss_pred -HHHHHHHHHHh
Q 008797 231 -MKELIGIIEGQ 241 (553)
Q Consensus 231 -~qeLv~~i~eq 241 (553)
.+.|++++.++
T Consensus 416 fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 416 FLLSLLEMFKED 427 (675)
T ss_pred HHHHHHHHHhhh
Confidence 45577777775
No 124
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.87 E-value=2.9e+02 Score=32.33 Aligned_cols=171 Identities=13% Similarity=0.249 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHhhcccc------hh-hhcCChHHHHHHH---HHHHH--HHhhhcccccHHHHHHHHHHHhhccccCC
Q 008797 157 DEFIREKVLSFIRDKVFPL------KA-ELLKPQEEMERHI---TDLIK--KVLQSLEDVTGAEFRMFMDFLKSLSLFGE 224 (553)
Q Consensus 157 eE~vREr~lkFl~~kl~~l------~~-e~l~~~eE~E~~i---~~~ik--K~~~vL~dVT~eEF~l~m~lL~sl~~~~~ 224 (553)
++..+.+++..|.+++..+ |+ +++ |.+.+.+++ .+.++ .++-+.+|+-..+|.++.+.+-
T Consensus 398 ~d~s~q~~~~~l~~~~~~l~~~~l~p~~DLl-Ppp~v~~~l~ll~ei~~~~~a~~~~~d~~~~df~~l~s~vl------- 469 (655)
T KOG3758|consen 398 EDISKQRFIGYLEDHVKKLMRKELSPPSDLL-PPPAVREYLNLLVEIFEIYEASHTAEDGEQLDFKLLLSCVL------- 469 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccC-CCHHHHHHHHHHHHHHHHhhhhhccccccccchHHHHHHHH-------
Confidence 4567899999998876553 22 444 446676655 23333 2233567888888886654431
Q ss_pred CCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHH
Q 008797 225 KAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLK 304 (553)
Q Consensus 225 ~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK 304 (553)
++|++++...|... ++.+|...+=-.|+|+.+.....++..--.+.+.++-.++--+++.|. .
T Consensus 470 -------dpilq~c~~sae~~--lp~~d~~~~if~iNcL~~iks~l~~~e~~~~~~e~lq~~ie~~~d~L~--------t 532 (655)
T KOG3758|consen 470 -------DPILQMCQKSAEAH--LPTSDKGSLIFMINCLDLIKSRLARYEFLDERVEMLQAKIEAYLDTLV--------T 532 (655)
T ss_pred -------HHHHHHHHHHHHhc--CCCcccccceehhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 66888887766544 666777766667899999888877766666666666644433333221 0
Q ss_pred HHHHhCCCCCchhhhhhhHHHHHHHHHhcCCCC--CCCCccchHHHHHHHHHHHHh
Q 008797 305 ALAEISPYTTPQDSRQILPSVAVLLKKYMPLRK--TGGEEMNFTYVECLLYTFHHL 358 (553)
Q Consensus 305 ~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~~~--~~~~~l~fs~vEcLL~afh~L 358 (553)
+.+ ...-+..=|-.+|+.+-..-|..+ +..+++.-..+-..+-.|...
T Consensus 533 ~q~------s~ll~~~GLs~~~q~~~~~~p~~~~ls~~~~l~s~~~~~~i~~fd~~ 582 (655)
T KOG3758|consen 533 LQV------SFLLENTGLSDLYQKFNMITPEDSVLSLDPDLESALLDEAIVKFDMF 582 (655)
T ss_pred HHH------HHHHHHcChHHHHHHHHhcCcchhhhhccccccHHHHHHHHHHHHHH
Confidence 000 001122235567888887788777 456777777776666666664
No 125
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=44.17 E-value=61 Score=33.48 Aligned_cols=75 Identities=28% Similarity=0.279 Sum_probs=49.7
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhh-chhHHHHHHHHHHHHHHccchHHHHHHH
Q 008797 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA-EEIVERDAVHKALMSLLRQDVKASLTAL 144 (553)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqs-dd~~E~~~v~~aL~sllk~D~k~tL~~l 144 (553)
.++|+..+.++|.|++..||.+|+-.|-.+-- +..++.|+.+|++ ++...+..+-.+ |.+...+..+..+
T Consensus 72 ~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------~~a~~~li~~l~~d~~~~vR~~aa~a---L~~~~~~~a~~~l 142 (335)
T COG1413 72 SEEAVPLLRELLSDEDPRVRDAAADALGELGD------PEAVPPLVELLENDENEGVRAAAARA---LGKLGDERALDPL 142 (335)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC------hhHHHHHHHHHHcCCcHhHHHHHHHH---HHhcCchhhhHHH
Confidence 46788888888888888888888886655542 3567788888885 555555554444 4444444446666
Q ss_pred HHhhc
Q 008797 145 FKHIG 149 (553)
Q Consensus 145 f~qI~ 149 (553)
+..+.
T Consensus 143 ~~~l~ 147 (335)
T COG1413 143 LEALQ 147 (335)
T ss_pred HHHhc
Confidence 66654
No 126
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=43.49 E-value=6e+02 Score=30.31 Aligned_cols=182 Identities=17% Similarity=0.223 Sum_probs=104.5
Q ss_pred hHHHHHhhccccccccCcchhh-----hHHHHHHHHHhhchhHHHHHHHHHHHHHHcc-chHHHHHHHHHhhccCCCCCC
Q 008797 83 GVRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKASLTALFKHIGSVDEPST 156 (553)
Q Consensus 83 ~IR~~aik~Lp~lck~~~e~~~-----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D~k~tL~~lf~qI~~~~e~~~ 156 (553)
.|-...|+=+-.||+..|||++ ||+==|+-+|.+-..+=+-.+.+++=-+-+. .|..+|-.|++.+. ..
T Consensus 703 Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-----vq 777 (975)
T COG5181 703 KVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-----VQ 777 (975)
T ss_pred HHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-----HH
Confidence 4778889999999999999975 6887888888887766666666665555443 66777777777665 22
Q ss_pred hHHHHH--------------------------------------HHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHh
Q 008797 157 DEFIRE--------------------------------------KVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVL 198 (553)
Q Consensus 157 eE~vRE--------------------------------------r~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~ 198 (553)
|-+.|- |+++|+-+++.....++ --.|+-++.-
T Consensus 778 eRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dY-------vy~itPlleD-- 848 (975)
T COG5181 778 ERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDY-------VYSITPLLED-- 848 (975)
T ss_pred HHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHh--
Confidence 223221 23333333332221111 2234555555
Q ss_pred hhcccccHHHHHHHHHHHhhccccCCCCchhH-HHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchh
Q 008797 199 QSLEDVTGAEFRMFMDFLKSLSLFGEKAPTER-MKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGS 277 (553)
Q Consensus 199 ~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr-~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st 277 (553)
.|.|-...--..-|.+.+.|-+.-..++.+- +--|+.++-- .-|+++ |..|.++.+|+.- |+.--++.
T Consensus 849 -AltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwp-----NIle~s-Phvi~~~~Eg~e~----~~~~lg~g 917 (975)
T COG5181 849 -ALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWP-----NILEPS-PHVIQSFDEGMES----FATVLGSG 917 (975)
T ss_pred -hhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhh-----hccCCC-cHHHHHHHHHHHH----HHHHhccH
Confidence 4555555555667777776666532232210 1112232221 223333 5566777676654 44445568
Q ss_pred hHHHHHHhhhcc
Q 008797 278 KFLNYLNKHIIP 289 (553)
Q Consensus 278 ~f~~y~~~~IlP 289 (553)
.|++|+..-+|.
T Consensus 918 ~~m~Yv~qGLFH 929 (975)
T COG5181 918 AMMKYVQQGLFH 929 (975)
T ss_pred HHHHHHHHhccC
Confidence 899999987775
No 127
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=43.39 E-value=1.8e+02 Score=34.14 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=75.8
Q ss_pred HHhhhhhHHhccC--CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHH
Q 008797 50 LAAQLIPRFFKFF--PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHK 127 (553)
Q Consensus 50 LAaqfI~kffk~F--P~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~ 127 (553)
=+|..|-+|--.. |++-.+++.++--+.-.--+..|-.|+|-|-+++...|+-+.- +.-=+.=|.+|+ -++...=
T Consensus 283 E~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v-cN~evEsLIsd~--Nr~Isty 359 (898)
T COG5240 283 EAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV-CNKEVESLISDE--NRTISTY 359 (898)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee-cChhHHHHhhcc--cccchHH
Confidence 3455555544433 6666677777777777777778999999999888877765331 111122344443 3566677
Q ss_pred HHHHHHccchHHHHHHHHHhhccCCCCCCh-------HHHHHHHHHHHH
Q 008797 128 ALMSLLRQDVKASLTALFKHIGSVDEPSTD-------EFIREKVLSFIR 169 (553)
Q Consensus 128 aL~sllk~D~k~tL~~lf~qI~~~~e~~~e-------E~vREr~lkFl~ 169 (553)
|+-+|||.....++..|.++|.+.-....| |.+|..++.|=+
T Consensus 360 AITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~ 408 (898)
T COG5240 360 AITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS 408 (898)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH
Confidence 889999999999999998888654333333 346777666543
No 128
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.11 E-value=1.3e+02 Score=35.85 Aligned_cols=108 Identities=17% Similarity=0.236 Sum_probs=68.7
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchH----HHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH
Q 008797 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (553)
Q Consensus 33 ~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~----Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ria 107 (553)
-|.-+|.+.. .+.++.-=..|+|.+--..--+.-+. -+.+++-=.-|.++.||+||+..|..+=-+..+===+|.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~ 165 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVV 165 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHH
Confidence 3666777777 66777777888888877643333333 444556667799999999999999877643333223466
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHH
Q 008797 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTAL 144 (553)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~l 144 (553)
-+|.-++|-|-+.|+ +.|.++-+..|+. |+.-+
T Consensus 166 n~l~~liqnDpS~EV---RRaaLsnI~vdns-Tlp~I 198 (892)
T KOG2025|consen 166 NLLKDLIQNDPSDEV---RRAALSNISVDNS-TLPCI 198 (892)
T ss_pred HHHHHHHhcCCcHHH---HHHHHHhhccCcc-cchhH
Confidence 677777777666653 4444444444433 44433
No 129
>KOG2479 consensus Translation initiation factor 3, subunit d (eIF-3d) [Translation, ribosomal structure and biogenesis]
Probab=43.09 E-value=19 Score=40.00 Aligned_cols=12 Identities=50% Similarity=0.614 Sum_probs=5.8
Q ss_pred CCCCCCcccCCC
Q 008797 533 RGGIRGRGRGWG 544 (553)
Q Consensus 533 ~~g~rgrgr~~g 544 (553)
|+++|+|||.+|
T Consensus 141 r~~~~~~g~rfg 152 (549)
T KOG2479|consen 141 RLYGRNRGRRFG 152 (549)
T ss_pred hhcccccccccc
Confidence 334455555444
No 130
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=42.98 E-value=3.3e+02 Score=29.03 Aligned_cols=156 Identities=16% Similarity=0.228 Sum_probs=82.0
Q ss_pred HHHH-HHHHhhhhhhccccc-cChhhHHHHHHHhcCCHHHHHHHhhhhhH-HhccCCCcchHHHHHhhhhhcccchhHHH
Q 008797 10 QIEK-LYEFGERLNEAKDKS-QNVKDYEGIIEAAKTSLKAKQLAAQLIPR-FFKFFPDLSSRAVDAHLDLIEEEELGVRV 86 (553)
Q Consensus 10 ~ie~-LY~~~~~L~~akdk~-~~~~~y~~Il~~~kgs~k~K~LAaqfI~k-ffk~FP~L~e~Ai~a~lDLcEDed~~IR~ 86 (553)
.++. |.++++.+.....-. ...+.-..||..+-|..+++.+-..+-.. --.-|..|..---..+..+..++++++=.
T Consensus 59 ~~~~vL~ef~~~~~~~~~~~~gg~~~~~~iL~~~l~~~~a~~il~~i~~~~~~~~fe~L~~ld~~~l~~lL~~EhpqtiA 138 (339)
T PRK05686 59 QVEAVLEEFEDEFEAGAYILMGGIDYARSLLEKALGEEKADSILERILESLGTSGFDFLRKMDPQQLANFIRNEHPQTIA 138 (339)
T ss_pred HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHcCHHHHHHHHHHHhccccCchHHHHhcCCHHHHHHHHHhcCHHHHH
Confidence 3444 356666665433222 45555677888777777766655443221 00244455544445556677788877433
Q ss_pred HH------------------------hhccccccccCcchhhhHHHHHHHHHhh---chhHHHHHHHHHHHHHHccchHH
Q 008797 87 QA------------------------IRGLPLFCKDTPEYLSKIVDILVQLLAA---EEIVERDAVHKALMSLLRQDVKA 139 (553)
Q Consensus 87 ~a------------------------ik~Lp~lck~~~e~~~riaDVL~QLLqs---dd~~E~~~v~~aL~sllk~D~k~ 139 (553)
-+ +..+-.+-.=+|+.+..|.++|-+.+.. .......-+ +.+..+|..=++.
T Consensus 139 ~iLs~l~~~~aa~vL~~l~~~~~~~v~~ria~l~~v~~~~~~~i~~~L~~~l~~~~~~~~~~~~g~-~~~a~Iln~~~~~ 217 (339)
T PRK05686 139 LILSYLKPDQAAEILSLLPEELRADVMMRIATLEGVSPEALKEVEEVLEKKLSSMANADRTKMGGV-KTVAEILNNLDRQ 217 (339)
T ss_pred HHHhCCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhhcccccccccCcH-HHHHHHHhcCCch
Confidence 33 3333334444455566666666666643 122222222 2345666666666
Q ss_pred HHHHHHHhhccCCCCCChHHHHHHHHHH
Q 008797 140 SLTALFKHIGSVDEPSTDEFIREKVLSF 167 (553)
Q Consensus 140 tL~~lf~qI~~~~e~~~eE~vREr~lkF 167 (553)
+-..++..|.. ..|.--+.+|++++.|
T Consensus 218 ~~~~il~~L~~-~d~~~a~~Ir~~mF~F 244 (339)
T PRK05686 218 TEKTILESLEE-EDPELAEKIKDLMFVF 244 (339)
T ss_pred HHHHHHHHHHh-hCHHHHHHHHHHhcCH
Confidence 66677777752 1222223467777766
No 131
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=42.84 E-value=17 Score=40.99 Aligned_cols=14 Identities=57% Similarity=0.959 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCcc
Q 008797 527 GISRGGRGGIRGRG 540 (553)
Q Consensus 527 g~~~~~~~g~rgrg 540 (553)
|.|.||.||.|||+
T Consensus 456 g~s~~~grgsrg~~ 469 (790)
T PF07794_consen 456 GRSQGGGRGSRGRS 469 (790)
T ss_pred ccccCCCcCCCCCC
Confidence 55555555555554
No 132
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=42.40 E-value=1.4e+02 Score=27.78 Aligned_cols=69 Identities=13% Similarity=0.320 Sum_probs=42.9
Q ss_pred hHHHHHHHHH-hhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchhhhcCCh
Q 008797 105 KIVDILVQLL-AAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQ 183 (553)
Q Consensus 105 riaDVL~QLL-qsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~ 183 (553)
++.-+|.++| .++|+..+.++=+=|-.+.+..|.| ..+..++. .+++++..+. +++
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg----------~K~~vM~Lm~-----------h~d 99 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLG----------AKERVMELMN-----------HED 99 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHS----------HHHHHHHHTS------------SS
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcC----------hHHHHHHHhc-----------CCC
Confidence 3445566666 5567888888888888888887775 44445544 6777776543 235
Q ss_pred HHHHHHHHHHHHH
Q 008797 184 EEMERHITDLIKK 196 (553)
Q Consensus 184 eE~E~~i~~~ikK 196 (553)
.|+...-+..+.|
T Consensus 100 ~eVr~eAL~avQk 112 (119)
T PF11698_consen 100 PEVRYEALLAVQK 112 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555555
No 133
>PF12235 FXR1P_C: Fragile X-related 1 protein C terminal; InterPro: IPR022034 Fragile X mental retardation 1 protein (FMR1P) , fragile X-related 1 protein (FXR1P) and fragile X-related 2 protein (FXR2P) are members of a small family of RNA-binding proteins that are thought to transport mRNA and to control their translation []. The proteins contain two KH domains and a RGG box that are characteristic motifs in RNA-binding proteins as well as nuclear localization and export signals. ; GO: 0003723 RNA binding; PDB: 2LA5_B.
Probab=42.26 E-value=11 Score=36.40 Aligned_cols=12 Identities=83% Similarity=1.589 Sum_probs=2.2
Q ss_pred CcccCCCCCCCC
Q 008797 538 GRGRGWGARGRG 549 (553)
Q Consensus 538 grgr~~g~~gr~ 549 (553)
|||||.++||||
T Consensus 112 grgRg~~~rgR~ 123 (155)
T PF12235_consen 112 GRGRGRGGRGRG 123 (155)
T ss_dssp SSSTT-------
T ss_pred CCCCCCCCCCCC
Confidence 444444666663
No 134
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.08 E-value=3.6e+02 Score=32.74 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=39.8
Q ss_pred hcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHH
Q 008797 77 IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTAL 144 (553)
Q Consensus 77 cEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~l 144 (553)
+.+.|-.+=..||++|.........+.+-.-+-|+|||.+.|...+...=.++..|++.||+--+.-|
T Consensus 401 I~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii 468 (968)
T KOG1060|consen 401 IKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEIL 468 (968)
T ss_pred HhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHH
Confidence 33444445555566666655555555555666666666666665555555666666666666554433
No 135
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.96 E-value=1e+02 Score=35.14 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=82.6
Q ss_pred HHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHH-----Hhhhhhcccch-hHHHHHhhccccccccCc-----chhh
Q 008797 36 GIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVD-----AHLDLIEEEEL-GVRVQAIRGLPLFCKDTP-----EYLS 104 (553)
Q Consensus 36 ~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~-----a~lDLcEDed~-~IR~~aik~Lp~lck~~~-----e~~~ 104 (553)
.|.-...++...+.=|..-+.....+=|.+.+-.++ .++.+....+. .+.+++.-.|..||+.-. +.++
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 344455678888888888888888888888887654 57888888886 678899999999999874 6688
Q ss_pred hHHHHHHHHHhhchhHHHHHHHHHHHHHHcc
Q 008797 105 KIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 105 riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (553)
.+-.+|..||.+.|+..+.-+-+||..|-+-
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999899998877654
No 136
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.03 E-value=6.3e+02 Score=29.91 Aligned_cols=119 Identities=16% Similarity=0.214 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHh--hhccccCCCCChHHHHHHHHHHHHhhhhhc-------cCCchhhHHHHHHhhhccCCCCC-Chh-
Q 008797 229 ERMKELIGIIEGQ--ADLDAQFNVSDADHIDRLISCLYMALPFFL-------RGASGSKFLNYLNKHIIPVFDKL-PEE- 297 (553)
Q Consensus 229 gr~qeLv~~i~eq--a~Ld~~f~~sd~d~idrli~cl~~Alp~fs-------~~v~st~f~~y~~~~IlP~l~~l-~~~- 297 (553)
+| .+|++-+.++ .-|-..|.+.+..+||.|+.|++.|..=++ +-..-.=...| -+.+.-.+..- ++.
T Consensus 605 qR-~kla~nl~~~lr~all~l~~aLn~ksiDdF~~a~~saaea~sl~lKKvDKK~er~ll~~~-rk~L~eQl~~~~ePal 682 (776)
T KOG2235|consen 605 QR-EKLAENLPEMLRDALLSLFAALNSKSIDDFHDAVYSAAEACSLALKKVDKKGERELLAKH-RKELHEQLCSQTEPAL 682 (776)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHH-HHHHHHHHhcccchHH
Confidence 44 6677777666 335567778888999999999997654321 11111111111 11111111100 111
Q ss_pred -hhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhc
Q 008797 298 -RKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK 361 (553)
Q Consensus 298 -~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k 361 (553)
.-+-.|=+|+-+.. .-...+..+++.|..+|+..+|... =+||-++|.|.=+
T Consensus 683 lL~l~vllLf~ki~~-s~lhA~Gk~Vsaiiahik~kl~Edq-----------~alL~~yq~~vvt 735 (776)
T KOG2235|consen 683 LLHLSVLLLFAKITN-SPLHASGKFVSAIIAHIKDKLPEDQ-----------FALLQAYQKLVVT 735 (776)
T ss_pred HHHHHHHHHHHHHcC-CcccCccchHHHHHHHHHhhCChhH-----------HHHHHHHHhhhhh
Confidence 11122223333321 1123367788889999999888632 3788888887766
No 137
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.33 E-value=1.9e+02 Score=34.61 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhcccccHHHHH-HHHHHHh-hccccCCCCchhHHHHHHHHHH
Q 008797 190 ITDLIKKVLQSLEDVTGAEFR-MFMDFLK-SLSLFGEKAPTERMKELIGIIE 239 (553)
Q Consensus 190 i~~~ikK~~~vL~dVT~eEF~-l~m~lL~-sl~~~~~~s~~gr~qeLv~~i~ 239 (553)
+..++.| +++--|..+|. -|..+++ -|+.++..+...|..+++.-|.
T Consensus 22 ~~kl~~k---~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv 70 (892)
T KOG2025|consen 22 YSKLLAK---VMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFV 70 (892)
T ss_pred HHHHHHH---HHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHH
Confidence 4445566 33334444443 2444444 4566665555566555544443
No 138
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=39.91 E-value=19 Score=33.55 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=6.8
Q ss_pred HHhhhhhcCCCC
Q 008797 454 AMSKPLHSKTPS 465 (553)
Q Consensus 454 ~li~~L~~~pPs 465 (553)
..++..+|=||.
T Consensus 75 eyLR~yL~LP~e 86 (124)
T PTZ00034 75 EYLRTYLHLPPD 86 (124)
T ss_pred HHHHHHhCCCcc
Confidence 445566666654
No 139
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=39.30 E-value=3.4e+02 Score=27.27 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=84.2
Q ss_pred cchHHHHHHHHHhhhhhhccccccChhh-HHHHHHHhcCC-HHHHHHHhhhhhHHhc----cCCCcchHHHHHhhh---h
Q 008797 6 DEAKQIEKLYEFGERLNEAKDKSQNVKD-YEGIIEAAKTS-LKAKQLAAQLIPRFFK----FFPDLSSRAVDAHLD---L 76 (553)
Q Consensus 6 ~~~~~ie~LY~~~~~L~~akdk~~~~~~-y~~Il~~~kgs-~k~K~LAaqfI~kffk----~FP~L~e~Ai~a~lD---L 76 (553)
.+...+-.+.+.-..|...++ ....- -+.|-..+++. ....-++-+...++++ .||.|+.-.....++ .
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~ 90 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSS 90 (234)
T ss_pred CChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccc
Confidence 344455566666666666664 33333 44444456644 4444455555555554 567777665554443 1
Q ss_pred hcccc--hhHHHHHhhccccccccCcchhhhHHHHHHHHH-hhchhHHHHHHHHHHHHHHcc---chHHHHHHHHHhhc
Q 008797 77 IEEEE--LGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL-AAEEIVERDAVHKALMSLLRQ---DVKASLTALFKHIG 149 (553)
Q Consensus 77 cEDed--~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLL-qsdd~~E~~~v~~aL~sllk~---D~k~tL~~lf~qI~ 149 (553)
+-+++ -.+.+..--.+-.+|+..|++-.-+.-.|.++| +.++++-....=.+|..+... |+..+..++-.++.
T Consensus 91 ~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~ 169 (234)
T PF12530_consen 91 FSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLS 169 (234)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcC
Confidence 22222 223333223444679999886666666678888 777777777777888888865 77777777777774
No 140
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=39.03 E-value=1.9e+02 Score=27.22 Aligned_cols=73 Identities=32% Similarity=0.439 Sum_probs=48.9
Q ss_pred HHHHHHHHHhh--hhh-ccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHH
Q 008797 257 DRLISCLYMAL--PFF-LRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKK 331 (553)
Q Consensus 257 drli~cl~~Al--p~f-s~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~ 331 (553)
+||...+...+ |.. +....+.-|++.+..-+ .=+.+|..+-.-++|-|+.+|.++.+..+-.++.-|..+|..
T Consensus 21 ~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l--~~~~~~~~rvaAFiKRLl~~sl~~~~~~~~~~L~~i~~ll~~ 96 (164)
T PF03914_consen 21 DRFYRALYSLLLDPELFSSSDKSALLLNLLDKSL--KSDHLPIQRVAAFIKRLLQLSLHLPPSFALAILALIRKLLKR 96 (164)
T ss_pred HHHHHHHHHHHcchhhccccchHHHHHHHHHHHH--cccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 77777777776 332 22222344888777655 556667788888899999998877776666666666666554
No 141
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=38.56 E-value=87 Score=27.62 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=40.2
Q ss_pred HHHHhhcccccccc----CcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccch
Q 008797 85 RVQAIRGLPLFCKD----TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV 137 (553)
Q Consensus 85 R~~aik~Lp~lck~----~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~ 137 (553)
|+.|+-+|-.+|.. -.+|++.|...+..++.+.|+..+-.+=.||-.+.+.-.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 55555555544433 346778888888899999999999999999999988743
No 142
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=38.20 E-value=3.2e+02 Score=33.81 Aligned_cols=103 Identities=23% Similarity=0.384 Sum_probs=64.6
Q ss_pred hhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHH----------------------HHHHHHHHHH
Q 008797 74 LDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVE----------------------RDAVHKALMS 131 (553)
Q Consensus 74 lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E----------------------~~~v~~aL~s 131 (553)
|-+..|+|..||..|+-.|-...++-|-.+..+-+-|.++|-++-..- +.++=.++-+
T Consensus 1013 l~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmyt 1092 (1233)
T KOG1824|consen 1013 LKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYT 1092 (1233)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHH
Confidence 447899999999999999999999988766666666677777655432 2333344444
Q ss_pred HHcc-chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh-hcccc-hhhhc
Q 008797 132 LLRQ-DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD-KVFPL-KAELL 180 (553)
Q Consensus 132 llk~-D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~-kl~~l-~~e~l 180 (553)
|+.+ --+.-++.++++... .=+|.-=-|++.|+-. |+..+ |+.++
T Consensus 1093 LLdscld~~dit~Fl~~~~~----GL~DhydiKmlt~l~l~rLa~lcPs~Vl 1140 (1233)
T KOG1824|consen 1093 LLDSCLDRLDITEFLNHVED----GLEDHYDIKMLTFLMLARLADLCPSAVL 1140 (1233)
T ss_pred HHHhhhhhccHHHHHHHHHh----hcchhhHHHHHHHHHHHHHHhhCcHHHH
Confidence 4444 223334445554431 1122234577777766 77776 66665
No 143
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.10 E-value=8.7e+02 Score=30.17 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred hhHHHHHHHHH---hhchhHHHHHHHHHHHHHH-------ccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcc
Q 008797 104 SKIVDILVQLL---AAEEIVERDAVHKALMSLL-------RQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF 173 (553)
Q Consensus 104 ~riaDVL~QLL---qsdd~~E~~~v~~aL~sll-------k~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~ 173 (553)
+|.++||.|.= =.|...=.++.+.....+. +.+++-.|..+.+... .-+|-+|..+-.-+..=+.
T Consensus 480 arac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~-----~~~e~~~~hvp~~mq~lL~ 554 (1010)
T KOG1991|consen 480 ARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE-----QADEKVSAHVPPIMQELLK 554 (1010)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch-----hhhhhHhhhhhHHHHHHHH
Q ss_pred cchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCCh
Q 008797 174 PLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDA 253 (553)
Q Consensus 174 ~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~ 253 (553)
- ..|+|.-.++.+-. .+-.-.++|..-|--=|- |.|+..+..-+.=+.+.+.+|.
T Consensus 555 L--------~ne~End~Lt~vme---~iV~~fseElsPfA~eL~--------------q~La~~F~k~l~~~~~~~~~~d 609 (1010)
T KOG1991|consen 555 L--------SNEVENDDLTNVME---KIVCKFSEELSPFAVELC--------------QNLAETFLKVLQTSEDEDESDD 609 (1010)
T ss_pred H--------HHhcchhHHHHHHH---HHHHHHHHhhchhHHHHH--------------HHHHHHHHHHHhccCCCCccch
Q ss_pred HHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCC------chhhhhhhHHHHH
Q 008797 254 DHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT------PQDSRQILPSVAV 327 (553)
Q Consensus 254 d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~------~~~a~~~l~~i~~ 327 (553)
|-==..+-|++..-.+...-......+.++--.++|+.+.+-.....++-.-+-+++.+|| ....=++++.|++
T Consensus 610 dk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e 689 (1010)
T KOG1991|consen 610 DKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILE 689 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHH
Q ss_pred HHHHhcCCCCCCCCccchHHHHHHHHHHHH
Q 008797 328 LLKKYMPLRKTGGEEMNFTYVECLLYTFHH 357 (553)
Q Consensus 328 ~L~~~mP~~~~~~~~l~fs~vEcLL~afh~ 357 (553)
.+.++- +-|.+-.+.+||+
T Consensus 690 ~~~~~~-----------~dyf~d~~~~l~N 708 (1010)
T KOG1991|consen 690 VFQDDG-----------IDYFTDMMPALHN 708 (1010)
T ss_pred HHhhhh-----------HHHHHHHHHHHhh
No 144
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=37.77 E-value=76 Score=40.48 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=49.7
Q ss_pred HHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchh
Q 008797 48 KQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (553)
Q Consensus 48 K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~ 119 (553)
+.+-+|| || =++.-=.++-.+.++|+.+--...++...|-.||+|+-|. -...+++.|.+||+.+..
T Consensus 175 ~Lil~Ql--rw-Ld~i~d~~~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds--~h~~v~~~L~~ll~~~~~ 241 (1426)
T PF14631_consen 175 RLILNQL--RW-LDRIVDSEELTDKLFEVLSIAPVELQKEIISSLPEILDDS--QHDEVVEELLELLQENPE 241 (1426)
T ss_dssp HHHHGGG--TT--S--SSHHHHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GG--GHHHHHHHHHHHHHH-ST
T ss_pred HHHHHHh--hc-cccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHhcCCc
Confidence 5555665 33 2355557888999999999888899999999999999874 368899999999998743
No 145
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=36.84 E-value=8.7e+02 Score=29.70 Aligned_cols=115 Identities=24% Similarity=0.291 Sum_probs=82.9
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhh-----hhhcccchh-------------------------
Q 008797 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHL-----DLIEEEELG------------------------- 83 (553)
Q Consensus 35 ~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~l-----DLcEDed~~------------------------- 83 (553)
.+||-..+ .++++.+=||..|.+-.+---.++|+.+-+.+ .-...+++.
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi 881 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI 881 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence 34555555 88999999999999888776666666553322 222222222
Q ss_pred -----------------HHHHHhhccccccccCcchhh-----hHHHHHHHHHhhchhHHHHHHHHHHHHHHcc-chHHH
Q 008797 84 -----------------VRVQAIRGLPLFCKDTPEYLS-----KIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DVKAS 140 (553)
Q Consensus 84 -----------------IR~~aik~Lp~lck~~~e~~~-----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D~k~t 140 (553)
|....|.=+-.||...|||++ ||+==|+-+|.+-...=+-++.|++=-+-+. -|..+
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdV 961 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDV 961 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHH
Confidence 666677777788999999976 6888888899888887777777777766665 78888
Q ss_pred HHHHHHhhc
Q 008797 141 LTALFKHIG 149 (553)
Q Consensus 141 L~~lf~qI~ 149 (553)
|..|++.+.
T Consensus 962 LatLlnnLk 970 (1172)
T KOG0213|consen 962 LATLLNNLK 970 (1172)
T ss_pred HHHHHhcch
Confidence 888888776
No 146
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=36.78 E-value=3.7e+02 Score=31.22 Aligned_cols=119 Identities=16% Similarity=0.129 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhh--ccccCCCCChHHHHHHH
Q 008797 183 QEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQAD--LDAQFNVSDADHIDRLI 260 (553)
Q Consensus 183 ~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~--Ld~~f~~sd~d~idrli 260 (553)
+.++.+.+..++++ |....| .+|-.++.+-|+| .+++=++...+. =|.-|+++|.+.+..++
T Consensus 564 s~~l~e~lyk~~~~------dpr~vE-~lfkyv~dnqpi~---------~eafIWlfkk~~~~Edglfd~ddke~vR~~l 627 (711)
T COG1747 564 SLELREALYKEGEK------DPRVVE-ALFKYVADNQPIY---------PEAFIWLFKKAYSIEDGLFDSDDKETVRMSL 627 (711)
T ss_pred cHHHHHHHHHHhhc------CHHHHH-HHHHHHHhcCcch---------HHHHHHHHHHhccccccccChhhHHHHHHHH
Confidence 56777777777766 332222 3566666666666 345545544322 23568888887777777
Q ss_pred HHHHHhhhhhccCCch---hhHHHHHHhhhccCCCCC-ChhhhhhHHHHHHHhCCCCCchhhh
Q 008797 261 SCLYMALPFFLRGASG---SKFLNYLNKHIIPVFDKL-PEERKLDLLKALAEISPYTTPQDSR 319 (553)
Q Consensus 261 ~cl~~Alp~fs~~v~s---t~f~~y~~~~IlP~l~~l-~~~~kl~lLK~lAe~s~~~~~~~a~ 319 (553)
...-.++|--+...+. ..+.+|+..+-+-.--.+ .++ .+++|-|--+|.+|..--+.
T Consensus 628 ~Sal~~m~qnas~ssk~lgk~l~~lLVgq~yl~~~~~i~~~--~e~akef~ll~~kcpqF~~~ 688 (711)
T COG1747 628 GSALCAMPQNASTSSKRLGKKLWTLLVGQRYLGVRQLITEA--EETAKEFGLLSEKCPQFPPK 688 (711)
T ss_pred HHHHHhhhcccCcchHHHHHHHHHHHhcccceeeehhhhhh--HHHHHHHHHHHHhcCCCChh
Confidence 7666666665555544 566677665543322222 223 78999999999999644333
No 147
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=36.48 E-value=4.7e+02 Score=26.50 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=15.7
Q ss_pred hhcccchhHHHHHhhccccccc
Q 008797 76 LIEEEELGVRVQAIRGLPLFCK 97 (553)
Q Consensus 76 LcEDed~~IR~~aik~Lp~lck 97 (553)
|++|+|+.|-+.+|...-.+-+
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~ 22 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYP 22 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 6789999999888876655443
No 148
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=36.04 E-value=6e+02 Score=27.63 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=60.4
Q ss_pred hhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHH
Q 008797 277 SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFH 356 (553)
Q Consensus 277 t~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh 356 (553)
.+||+++.-+++-.+...+.+.|...|..|+-+..++....-..-++.|..+|+.-+..+. ++...+.+++|.-.
T Consensus 318 QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~---~~v~~s~L~tL~~~-- 392 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD---ADVLLSSLETLKMI-- 392 (415)
T ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--
Confidence 6888888888877777776668999999999999988877766677777777887775544 34666666665544
Q ss_pred HhhhcCchhh
Q 008797 357 HLAHKAPNAT 366 (553)
Q Consensus 357 ~L~~k~P~~~ 366 (553)
....|+.+
T Consensus 393 --l~~~~~~i 400 (415)
T PF12460_consen 393 --LEEAPELI 400 (415)
T ss_pred --HHcCHHHH
Confidence 34456654
No 149
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=35.88 E-value=22 Score=24.79 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=20.2
Q ss_pred HHHHhhhhhcccchhHHHHHhhcccccc
Q 008797 69 AVDAHLDLIEEEELGVRVQAIRGLPLFC 96 (553)
Q Consensus 69 Ai~a~lDLcEDed~~IR~~aik~Lp~lc 96 (553)
+|..++.|+..+|..|+.+|+..|-.+|
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5667777777777777777777766655
No 150
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=35.36 E-value=1e+03 Score=29.99 Aligned_cols=149 Identities=18% Similarity=0.227 Sum_probs=87.8
Q ss_pred HHhhhhhhccccc---cChhhHHHHHHHhcCCHH-----HHHHHhhhhhHHhccCCCcchHHHHHhhhhhccc-chhHHH
Q 008797 16 EFGERLNEAKDKS---QNVKDYEGIIEAAKTSLK-----AKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEE-ELGVRV 86 (553)
Q Consensus 16 ~~~~~L~~akdk~---~~~~~y~~Il~~~kgs~k-----~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDe-d~~IR~ 86 (553)
++-+.++++++.. -..+.|+.||...=.++. ++.=.+++-..|.+.=+..+.+-|...++=|-+. ++.||.
T Consensus 657 ~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~ 736 (1133)
T KOG1943|consen 657 KFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPNQIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRR 736 (1133)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHH
Confidence 3445677777653 255668888876553333 5555678888899888888777779999988877 888998
Q ss_pred HHhhccccccccCcchhhh-HHHHHHHHHhhchhHH-----HHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHH
Q 008797 87 QAIRGLPLFCKDTPEYLSK-IVDILVQLLAAEEIVE-----RDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFI 160 (553)
Q Consensus 87 ~aik~Lp~lck~~~e~~~r-iaDVL~QLLqsdd~~E-----~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~v 160 (553)
--+=++-.+|.. .+.. .=|+|.++.-+-.|.- +...=.+|..+.+. .-+.+|+ ..-++.
T Consensus 737 g~~lal~~lp~~---~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~----~~~~~~~--------~~~~k~ 801 (1133)
T KOG1943|consen 737 GLILALGVLPSE---LIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKT----VTSLLFS--------ESIEKF 801 (1133)
T ss_pred HHHHHHccCcHH---hhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHH----HHHhhcc--------ccHHHH
Confidence 877777777742 2222 4556666555433322 22222222222211 1122222 223567
Q ss_pred HHHHHHHHHhhcccchhhh
Q 008797 161 REKVLSFIRDKVFPLKAEL 179 (553)
Q Consensus 161 REr~lkFl~~kl~~l~~e~ 179 (553)
||.+++-+.+.-.+-..++
T Consensus 802 ~e~LL~~lddYttd~rGDV 820 (1133)
T KOG1943|consen 802 RETLLNALDDYTTDSRGDV 820 (1133)
T ss_pred HHHHHHHHhhcccccCccH
Confidence 7777777666655554444
No 151
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=35.23 E-value=2.5e+02 Score=33.01 Aligned_cols=131 Identities=23% Similarity=0.305 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHh---cCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccc---hhHHHHHhhccccccccCcch-
Q 008797 30 NVKDYEGIIEAA---KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEE---LGVRVQAIRGLPLFCKDTPEY- 102 (553)
Q Consensus 30 ~~~~y~~Il~~~---kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed---~~IR~~aik~Lp~lck~~~e~- 102 (553)
....|..+|..+ +|.-+-|+-+-.-|..-.++-|+..|.|+..+-+.+||-+ ..||+-+| +.++.|.-
T Consensus 409 k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~i-----LG~EgP~a~ 483 (898)
T COG5240 409 KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGI-----LGREGPRAK 483 (898)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHH-----hcccCCCCC
Confidence 344566655532 5999999999999999999999999999999999999875 33566554 45555432
Q ss_pred -hhh-HHHHHHHHHhhchhHHHHHHHHHHHHHH--ccc--hHHHHHHHHHhhccCCCCCChHHHHHHH---HHHHHh
Q 008797 103 -LSK-IVDILVQLLAAEEIVERDAVHKALMSLL--RQD--VKASLTALFKHIGSVDEPSTDEFIREKV---LSFIRD 170 (553)
Q Consensus 103 -~~r-iaDVL~QLLqsdd~~E~~~v~~aL~sll--k~D--~k~tL~~lf~qI~~~~e~~~eE~vREr~---lkFl~~ 170 (553)
=+| |--|+-- +.-|....+.++-.||.-+- ..| .--++..++..+.. .-||.+|+|+ ++|+..
T Consensus 484 ~P~~yvrhIyNR-~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRcln----D~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 484 TPGKYVRHIYNR-LILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLN----DQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred CcchHHHHHHHH-HHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhh----cccHHHHHHHHHHHHhhhh
Confidence 123 4444433 33456666666666663321 112 23456677777773 3466788775 555554
No 152
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=35.06 E-value=70 Score=28.98 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=44.3
Q ss_pred chhHHHHHhhccccccccCcch---hhhHHHHHHHHHhh-ch----hHHHHHHHHHHHHHHccchHHHHHHHHHhhc
Q 008797 81 ELGVRVQAIRGLPLFCKDTPEY---LSKIVDILVQLLAA-EE----IVERDAVHKALMSLLRQDVKASLTALFKHIG 149 (553)
Q Consensus 81 d~~IR~~aik~Lp~lck~~~e~---~~riaDVL~QLLqs-dd----~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~ 149 (553)
|......|++..|.+-+-.+.| +...|.=|++.|.. ++ +.=-..-.+||++++-.+|..+..-|++++-
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~~~~~L~~~f~ 94 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEKVAPYLTEEFF 94 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGGHHH-HHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 6777888999999999888884 55555445444444 22 2223567899999999999988888888887
No 153
>PF08360 TetR_C_5: QacR-like protein, C-terminal region; InterPro: IPR013571 This entry represents the C-terminal domain found in the multidrug-binding transcription regulator QacR (P23217 from SWISSPROT) from Staphylococcus aureus, which is a member of the TetR (tetracycline-resistance) transcriptional regulator family of proteins. QacR is able to bind various environmental agents, which include a number of cationic lipophilic compounds, and thus regulate the transcription of QacA (P23215 from SWISSPROT), a multidrug efflux pump []. The C-terminal region of QacR contains a multifaceted, expansive drug-binding pocket, which is composed of several separate, but linked, binding sites []. The C-terminal domains of QacR and TetR share a multi-helical, interlocking structure.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G0E_E 1JUM_A 1RPW_D 1QVT_B 2HQ5_D 1JT0_B 2DTZ_E 1JUP_D 1JT6_D 1JUS_E ....
Probab=34.78 E-value=1.1e+02 Score=28.34 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHH-HhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHH
Q 008797 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIE-AAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQ 87 (553)
Q Consensus 9 ~~ie~LY~~~~~L~~akdk~~~~~~y~~Il~-~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~ 87 (553)
...||||..++-+.+.-+.+ -..+-.++.. ..+...-.+++-+ +.-+|...|-++=++
T Consensus 18 t~~eKLy~~a~~~~~~i~~p-l~~a~~EF~~~~~~~~ev~~~l~~-i~~~~~~~~~~ilee------------------- 76 (131)
T PF08360_consen 18 TATEKLYGMAEHMLDDIQTP-LSKAGEEFYSNQSKNPEVLEKLNE-IRRKYLEFFQKILEE------------------- 76 (131)
T ss_dssp SHHHHHHHHHHHHHHSSSGG-GHHHHHHHHHHCSSSHHHHHHHHH-HHHHHHHHHHHHHHH-------------------
T ss_pred CHHHHHHHHHHHHHHHhccH-HHHHHHHHHHcccCCHHHHHHHHH-HHHHHHHHHHHHHHH-------------------
Confidence 35899999998776443332 1122222233 3444445555554 333443333222222
Q ss_pred HhhccccccccCcchhhhH----HHHHHHHHhhchhHHHHHHHHHHHHHH
Q 008797 88 AIRGLPLFCKDTPEYLSKI----VDILVQLLAAEEIVERDAVHKALMSLL 133 (553)
Q Consensus 88 aik~Lp~lck~~~e~~~ri----aDVL~QLLqsdd~~E~~~v~~aL~sll 133 (553)
||+ --.|+.+|++-++.+ -|-|.|+.-..+..|+..+.+..+++|
T Consensus 77 GI~-~GEF~~~dv~~~a~il~s~l~GL~~~~~~~~~~e~~~l~~~ai~if 125 (131)
T PF08360_consen 77 GID-SGEFSIDDVEELAYILMSLLDGLSQWYYEKDKEELEALYRKAIDIF 125 (131)
T ss_dssp HHT-TTSS--STHHHHHHHHHHHHHHHHHTTTSS-HHHHHHHHHHHHHHH
T ss_pred HHH-cCcccCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 221 246777777766553 344566666667777777777766665
No 154
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.95 E-value=2.5e+02 Score=33.66 Aligned_cols=67 Identities=28% Similarity=0.411 Sum_probs=39.1
Q ss_pred CHHHHHHHhhhhhHHhccCC----CcchHHHHH--------hhhhhcccchhHHHHHhhccccccccCcchhhh--HHHH
Q 008797 44 SLKAKQLAAQLIPRFFKFFP----DLSSRAVDA--------HLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--IVDI 109 (553)
Q Consensus 44 s~k~K~LAaqfI~kffk~FP----~L~e~Ai~a--------~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r--iaDV 109 (553)
...+..=||.. ||..|| |+-.+++|. ++||.+|+-+.||-.||+++-.+--.-=+.+|+ +.|+
T Consensus 187 Ns~VrsnAa~l---f~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~l 263 (1005)
T KOG1949|consen 187 NSEVRSNAALL---FVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDL 263 (1005)
T ss_pred chhhhhhHHHH---HHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 33444444443 566665 555555554 568999999999999998864333222222444 4455
Q ss_pred HHHH
Q 008797 110 LVQL 113 (553)
Q Consensus 110 L~QL 113 (553)
|...
T Consensus 264 l~kI 267 (1005)
T KOG1949|consen 264 LKKI 267 (1005)
T ss_pred HHHH
Confidence 5443
No 155
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.93 E-value=9.5e+02 Score=29.28 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=28.8
Q ss_pred hhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhh
Q 008797 53 QLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (553)
Q Consensus 53 qfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqs 116 (553)
+||.+--..=|....+=|.+++.|.-..++.|+-.|--.|..++-+ |.-++.-|+-+.+|+..
T Consensus 228 E~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~Aa~~~i~l~~k 290 (948)
T KOG1058|consen 228 ELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKAAASTYIDLLVK 290 (948)
T ss_pred HHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHHHHHHHHHHHHh
Confidence 3444433344444444444444444444444444444444444432 34444444444444443
No 156
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=33.81 E-value=68 Score=27.85 Aligned_cols=6 Identities=17% Similarity=0.728 Sum_probs=4.5
Q ss_pred cccccc
Q 008797 471 SVNLSW 476 (553)
Q Consensus 471 ~i~lSW 476 (553)
+|..-|
T Consensus 30 PIV~~W 35 (81)
T PF15320_consen 30 PIVEPW 35 (81)
T ss_pred CEecCc
Confidence 677778
No 157
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=33.06 E-value=37 Score=31.78 Aligned_cols=9 Identities=0% Similarity=0.154 Sum_probs=6.4
Q ss_pred Ccccccccc
Q 008797 470 KSVNLSWKE 478 (553)
Q Consensus 470 ~~i~lSW~~ 478 (553)
..+..+|..
T Consensus 104 r~l~V~~a~ 112 (144)
T PLN03134 104 RHIRVNPAN 112 (144)
T ss_pred EEEEEEeCC
Confidence 578888854
No 158
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=33.00 E-value=2e+02 Score=32.77 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=59.4
Q ss_pred HHHHHhhhhhcc-cchhHHHHHhhccccccccCcchhhhHHHH-HHHHHh----hchhHHHHHHHHHHHHHHccchHHHH
Q 008797 68 RAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSKIVDI-LVQLLA----AEEIVERDAVHKALMSLLRQDVKASL 141 (553)
Q Consensus 68 ~Ai~a~lDLcED-ed~~IR~~aik~Lp~lck~~~e~~~riaDV-L~QLLq----sdd~~E~~~v~~aL~sllk~D~k~tL 141 (553)
+-+..+++.-.| +|..+|+-|+|-|-.+|+.+|.-+-.=+.+ .+.+|. +.+.+-..++..++..+-.++|-.-+
T Consensus 329 ~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I 408 (516)
T KOG2956|consen 329 EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCI 408 (516)
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHH
Confidence 456677777888 899999999999999999998533222222 233443 36667777777888888888888777
Q ss_pred HHHHHhhc
Q 008797 142 TALFKHIG 149 (553)
Q Consensus 142 ~~lf~qI~ 149 (553)
..+.--|.
T Consensus 409 ~~i~~~Il 416 (516)
T KOG2956|consen 409 VNISPLIL 416 (516)
T ss_pred HHHhhHHh
Confidence 77766666
No 159
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=32.99 E-value=8.1e+02 Score=29.77 Aligned_cols=183 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHHHh--hcccchhhhcCChHHHHHHHHHHHHHHhhhcc----cccHHHHHHHHH
Q 008797 141 LTALFKHIGSVDEPSTDEFIREKVLSFIRD--KVFPLKAELLKPQEEMERHITDLIKKVLQSLE----DVTGAEFRMFMD 214 (553)
Q Consensus 141 L~~lf~qI~~~~e~~~eE~vREr~lkFl~~--kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~----dVT~eEF~l~m~ 214 (553)
|..|++-|.+......+..+=..+++.|.- |+..-+..++ .--+=..++..++++++.-. +-.+++.-.+|+
T Consensus 119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll--~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALL--ELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHH--HcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Q ss_pred HHhhccccCCCCchhH----------HHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCch--hhHHHH
Q 008797 215 FLKSLSLFGEKAPTER----------MKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASG--SKFLNY 282 (553)
Q Consensus 215 lL~sl~~~~~~s~~gr----------~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~s--t~f~~y 282 (553)
.+-+-..-++...... ..+-|+++.++ |++++.-+++..++-++. .+||+..|-.. ..+++|
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~--l~s~~~r~~~~i~~~l~R----iLP~Lt~G~~e~m~~Lv~~ 270 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLER--LNSPFVRSNPQILQALAR----ILPFLTYGNEEKMDALVEH 270 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHH--hcCccccCCHHHHHHHHH----HhhHHhcCCHHHHHHHHHH
Q ss_pred HHhhhccCCCCCChh------hhhhHHHHHHHhCC--CCCchhhhhhhHH-HHHHHHHhc
Q 008797 283 LNKHIIPVFDKLPEE------RKLDLLKALAEISP--YTTPQDSRQILPS-VAVLLKKYM 333 (553)
Q Consensus 283 ~~~~IlP~l~~l~~~------~kl~lLK~lAe~s~--~~~~~~a~~~l~~-i~~~L~~~m 333 (553)
|...+ .|+..+.+ .+++.+-.+++..| ++|..=-+.++.. |.+.+..|+
T Consensus 271 F~p~l--~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL 328 (802)
T PF13764_consen 271 FKPYL--DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYL 328 (802)
T ss_pred HHHhc--ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHH
No 160
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=32.77 E-value=54 Score=34.18 Aligned_cols=18 Identities=44% Similarity=0.560 Sum_probs=8.3
Q ss_pred CCCcccCCCCCCCCCCCC
Q 008797 536 IRGRGRGWGARGRGRGYR 553 (553)
Q Consensus 536 ~rgrgr~~g~~gr~~~~~ 553 (553)
.|..+++.|+++-|++||
T Consensus 242 ~Rr~~~~~~~~~~~~~~r 259 (260)
T KOG2202|consen 242 ERRSGRRGGTGLQGRYYR 259 (260)
T ss_pred cccccccCCccccccccc
Confidence 344444444444555554
No 161
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=32.47 E-value=2.2e+02 Score=28.89 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=69.4
Q ss_pred CCChHHHHHHHHHHHHhhhhhccCCch----hh---HHHHHHhhhccCCCCCChhhhhhHHHHHHHhC----CCC-----
Q 008797 250 VSDADHIDRLISCLYMALPFFLRGASG----SK---FLNYLNKHIIPVFDKLPEERKLDLLKALAEIS----PYT----- 313 (553)
Q Consensus 250 ~sd~d~idrli~cl~~Alp~fs~~v~s----t~---f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s----~~~----- 313 (553)
..|+..+.+.|+|.-..-|..=+.+.. .. .++-+-+.|+..|+.-.+..|+..+|-+-.+. +-.
T Consensus 4 d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~ 83 (239)
T PF11935_consen 4 DEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPP 83 (239)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 457788888888888887764222221 22 23344457777777666667777777554431 110
Q ss_pred --------------------CchhhhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchhhhh
Q 008797 314 --------------------TPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNATNS 368 (553)
Q Consensus 314 --------------------~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~P~~~~~ 368 (553)
....-++--..+++.|+.++-.+. +.-+.+-+++-++..|+++.|.++..
T Consensus 84 ~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~-----i~~~~~~a~insL~~Iak~RP~~~~~ 153 (239)
T PF11935_consen 84 RRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPH-----ISSPLLTAIINSLSNIAKQRPQFMSR 153 (239)
T ss_dssp -GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT-------HHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred ccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcc-----cchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 111111112347778888776533 88899999999999999999999754
No 162
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=32.12 E-value=2e+02 Score=29.70 Aligned_cols=66 Identities=27% Similarity=0.378 Sum_probs=33.9
Q ss_pred CCCcchHHHHHhhhhhcccc----------------------hhHHHHHhhccccccccCcch---hhh-HHHHHHHHHh
Q 008797 62 FPDLSSRAVDAHLDLIEEEE----------------------LGVRVQAIRGLPLFCKDTPEY---LSK-IVDILVQLLA 115 (553)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed----------------------~~IR~~aik~Lp~lck~~~e~---~~r-iaDVL~QLLq 115 (553)
.|...+.|++|+-.|..+.+ +.++..|+|.|-.++..+ +| +.+ +.| |.+||.
T Consensus 67 ~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~~~i~~-ll~LL~ 144 (254)
T PF04826_consen 67 NPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLANYIPD-LLSLLS 144 (254)
T ss_pred ChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHHhhHHH-HHHHHH
Confidence 34555556666665555444 445566666666666554 22 222 333 356666
Q ss_pred hchhHHHHHHHHHH
Q 008797 116 AEEIVERDAVHKAL 129 (553)
Q Consensus 116 sdd~~E~~~v~~aL 129 (553)
+.+..-...|-+.|
T Consensus 145 ~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 145 SGSEKTKVQVLKVL 158 (254)
T ss_pred cCChHHHHHHHHHH
Confidence 65554444444443
No 163
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.65 E-value=2.6e+02 Score=31.98 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHH
Q 008797 161 REKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEG 240 (553)
Q Consensus 161 REr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~e 240 (553)
|.--++|+.+.+.+.. +.++.-+...++.+-.| ..|-++.--.+.+..|..+-.+-.....-+.+.+++.+.-
T Consensus 234 ritd~Af~ael~~~~~---l~~~~lL~s~~~~la~k----a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~ 306 (533)
T KOG2032|consen 234 RITDIAFFAELKRPKE---LDKTGLLGSVLLSLANK----ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIR 306 (533)
T ss_pred hHHHHHHHHHHhCccc---ccccccHHHHHHHHHHh----ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHH
Confidence 5555566665554431 11122334444444444 5566665556777777655444111112233455555554
Q ss_pred hhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCC
Q 008797 241 QADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT 314 (553)
Q Consensus 241 qa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~ 314 (553)
+ |.. ..|.+.+=..+.|+.+-++..+.-.-.+=| --+...+-|.|++...+-+..-..+|-.+++|||
T Consensus 307 g--L~D---~~~~~V~leam~~Lt~v~~~~~~~~l~~~~-l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 307 G--LYD---DLNEEVQLEAMKCLTMVLEKASNDDLESYL-LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred H--Hhc---CCccHHHHHHHHHHHHHHHhhhhcchhhhc-hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 2 443 344667778899999988887544333333 3334467777776655666666777888888885
No 164
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=31.21 E-value=2.1e+02 Score=34.34 Aligned_cols=80 Identities=25% Similarity=0.309 Sum_probs=59.3
Q ss_pred hhhhHHhccCCCcchHHHHH-----hhhhhcccchhHHHHHhhccccccccCcchhhh--HHHHHHHHHhhchhHHHHHH
Q 008797 53 QLIPRFFKFFPDLSSRAVDA-----HLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--IVDILVQLLAAEEIVERDAV 125 (553)
Q Consensus 53 qfI~kffk~FP~L~e~Ai~a-----~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r--iaDVL~QLLqsdd~~E~~~v 125 (553)
+.+.+-+..+| +.++.+ .--||.|+.+.||..+=+.+..+.+--+...-+ +-=.+.+|+..|....+.++
T Consensus 220 glf~~~~~~~~---~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a 296 (759)
T KOG0211|consen 220 GLFGKLYVSLP---DDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAA 296 (759)
T ss_pred hhhHHhccCCC---hHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHH
Confidence 44444444444 455544 447999999999999999999998865543222 33345788889999999999
Q ss_pred HHHHHHHHcc
Q 008797 126 HKALMSLLRQ 135 (553)
Q Consensus 126 ~~aL~sllk~ 135 (553)
-+++.+++..
T Consensus 297 ~~~~~~l~~l 306 (759)
T KOG0211|consen 297 VESLVSLLDL 306 (759)
T ss_pred HHHHHHHHHh
Confidence 9999999887
No 165
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=30.87 E-value=34 Score=34.28 Aligned_cols=7 Identities=29% Similarity=0.187 Sum_probs=3.6
Q ss_pred hhhhhcC
Q 008797 456 SKPLHSK 462 (553)
Q Consensus 456 i~~L~~~ 462 (553)
|.+||++
T Consensus 23 ieDlFyK 29 (241)
T KOG0105|consen 23 IEDLFYK 29 (241)
T ss_pred HHHHHhh
Confidence 4555553
No 166
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=29.80 E-value=1.2e+02 Score=33.60 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhcccc
Q 008797 160 IREKVLSFIRDKVFPL 175 (553)
Q Consensus 160 vREr~lkFl~~kl~~l 175 (553)
.|+++..||..+|..+
T Consensus 225 ~R~~l~~Yi~~~M~~v 240 (395)
T COG1498 225 LREQLEEYIESKMSEI 240 (395)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445555554444443
No 167
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=28.76 E-value=78 Score=28.99 Aligned_cols=66 Identities=17% Similarity=0.332 Sum_probs=44.3
Q ss_pred HHhhhhhHHhccCCC--cchHHHHHhhhhhcccchhHHHHHhhcccc-ccccCcchhhhHHHHHHHHHh
Q 008797 50 LAAQLIPRFFKFFPD--LSSRAVDAHLDLIEEEELGVRVQAIRGLPL-FCKDTPEYLSKIVDILVQLLA 115 (553)
Q Consensus 50 LAaqfI~kffk~FP~--L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~-lck~~~e~~~riaDVL~QLLq 115 (553)
-.|..+.+||+..|+ +..+..+.+++.+.+.+...|+..++.+-. +.+.+-.-+..+...|..+..
T Consensus 54 ~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~ 122 (169)
T cd00159 54 DVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQ 122 (169)
T ss_pred HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 567899999999987 677889999999988888888877765533 222221223444444444433
No 168
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=28.30 E-value=75 Score=21.39 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.6
Q ss_pred HHHHHhhccccccccCcchhhhHHHHHHHHHh
Q 008797 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLA 115 (553)
Q Consensus 84 IR~~aik~Lp~lck~~~e~~~riaDVL~QLLq 115 (553)
||..|++.|-.++- ++..+.|.++|+
T Consensus 1 VR~~Aa~aLg~igd------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------HHHHHHHHHHhc
Confidence 78899999999886 577888888775
No 169
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=28.29 E-value=4.9e+02 Score=30.93 Aligned_cols=164 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhh-ccccCCCCChHHHHHHHHHHHHhh
Q 008797 189 HITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQAD-LDAQFNVSDADHIDRLISCLYMAL 267 (553)
Q Consensus 189 ~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~-Ld~~f~~sd~d~idrli~cl~~Al 267 (553)
..+.++.. +......+|...|.+|..+.+. +..+| +.+...+.+..+ +...+ +-.|+..-+-.++
T Consensus 237 ~~~~~~~~----~~gff~n~fvd~~~fLeel~lk---s~~eK-~~Ff~~L~~~l~~~pe~i------~~~kvlp~Ll~~~ 302 (690)
T KOG1243|consen 237 RFILECRL----LGGFFRNDFVDTLLFLEELRLK---SVEEK-QKFFSGLIDRLDNFPEEI------IASKVLPILLAAL 302 (690)
T ss_pred hHHHHHHh----ccccccchHHHHHHHHHhcccC---cHHHH-HHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHh
Q ss_pred hhhc-------------cCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchh-hhhhhHHHHHHHHHhc
Q 008797 268 PFFL-------------RGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQD-SRQILPSVAVLLKKYM 333 (553)
Q Consensus 268 p~fs-------------~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~-a~~~l~~i~~~L~~~m 333 (553)
+|-. +-...-.|-.++...|++.|..-+...|+.||.-+=+...+-+.+. -++++|.+-.-+...=
T Consensus 303 ~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn 382 (690)
T KOG1243|consen 303 EFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTN 382 (690)
T ss_pred hccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCC
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHhhhc-CchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHH
Q 008797 334 PLRKTGGEEMNFTYVECLLYTFHHLAHK-APNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDL 404 (553)
Q Consensus 334 P~~~~~~~~l~fs~vEcLL~afh~L~~k-~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~ 404 (553)
| +.+|=.|-++-.|+-| .++-++. +||.||+++
T Consensus 383 ~-----------~Lre~Tlksm~~La~kL~~~~Ln~---------------------------Ellr~~ar~ 416 (690)
T KOG1243|consen 383 A-----------TLREQTLKSMAVLAPKLSKRNLNG---------------------------ELLRYLARL 416 (690)
T ss_pred H-----------HHHHHHHHHHHHHHhhhchhhhcH---------------------------HHHHHHHhh
No 170
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.17 E-value=2.5e+02 Score=33.37 Aligned_cols=28 Identities=43% Similarity=0.622 Sum_probs=19.3
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcc
Q 008797 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS 66 (553)
Q Consensus 32 ~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~ 66 (553)
=--+.++.|++ ++-++ |.||||-||=+.
T Consensus 195 l~~~~f~eA~r~~D~~e-------i~RffKmFPliG 223 (773)
T KOG0412|consen 195 LFKERFTEAVRKQDLKE-------ITRFFKMFPLIG 223 (773)
T ss_pred HHHHHHHHHHhcccHHH-------HHHHHHHccccC
Confidence 34456677777 55544 789999999544
No 171
>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []. The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.
Probab=28.03 E-value=1e+02 Score=26.04 Aligned_cols=41 Identities=24% Similarity=0.472 Sum_probs=30.2
Q ss_pred HHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHH
Q 008797 85 RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAV 125 (553)
Q Consensus 85 R~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v 125 (553)
.+..+.+|-.+|.+++...+.+.=||.+|...|=-.|-...
T Consensus 4 Q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~Dil~Eeail 44 (84)
T PF02020_consen 4 QVDLLNALEEFCAENPNLMPLFPKILQQLYDEDILEEEAIL 44 (84)
T ss_dssp HHHHHHHHHHHHHHTCGHGGHHHHHHHHHHHTTSS-HHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHhhhhhccHHHHH
Confidence 35677788888888888888888888888887765554444
No 172
>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]
Probab=27.86 E-value=61 Score=35.39 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=6.8
Q ss_pred CCCCCCCCCC
Q 008797 544 GARGRGRGYR 553 (553)
Q Consensus 544 g~~gr~~~~~ 553 (553)
|++|+|||+|
T Consensus 161 ~r~G~Grg~~ 170 (365)
T KOG2945|consen 161 GRQGGGRGNW 170 (365)
T ss_pred CCCCccCCCC
Confidence 3467777777
No 173
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.55 E-value=1.3e+03 Score=29.70 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=89.9
Q ss_pred HHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhccc--chhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008797 45 LKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEE--ELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (553)
Q Consensus 45 ~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDe--d~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (553)
+..-+||.+.|-+.-..=-+.--.-++.. +|++. -..+++.-..-|..+-+..|+.+.-|+==|.+=|++|+..++
T Consensus 199 ~~a~~la~~li~~~a~~~~~~i~~f~~~~--~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~R 276 (1266)
T KOG1525|consen 199 KEADKLASDLIERCADNLEDTIANFLNSC--LTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVR 276 (1266)
T ss_pred HHHHHHHHHHHHHhhhhhchhHHHHHHHH--HhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHH
Confidence 56777888888776654332222233333 34443 345677777777788888899999999999999999999999
Q ss_pred HHHHHHHHHHHcc-------chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccch
Q 008797 123 DAVHKALMSLLRQ-------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLK 176 (553)
Q Consensus 123 ~~v~~aL~sllk~-------D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~ 176 (553)
..|-+-+-.+|.. .-..++..+|..+. .....||-.+++++...+.+-|
T Consensus 277 l~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~-----D~~~~vR~~~v~~~~~~l~~~~ 332 (1266)
T KOG1525|consen 277 LKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFN-----DISVEVRMECVESIKQCLLNNP 332 (1266)
T ss_pred HHHHHHHHHHHhcchhhhcccchHHHHHHHHHhc-----cCChhhhhhHHHHhHHHHhcCc
Confidence 8887776666654 13457778888887 5667799999999998887744
No 174
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.55 E-value=7.4e+02 Score=30.26 Aligned_cols=128 Identities=23% Similarity=0.343 Sum_probs=86.0
Q ss_pred CCcchHHHHHhhhhhccc-chhHHHHHhhccccccccCc-------chhhhHHHHHHHHHhhchhHH-HHHHHHHHHHHH
Q 008797 63 PDLSSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTP-------EYLSKIVDILVQLLAAEEIVE-RDAVHKALMSLL 133 (553)
Q Consensus 63 P~L~e~Ai~a~lDLcEDe-d~~IR~~aik~Lp~lck~~~-------e~~~riaDVL~QLLqsdd~~E-~~~v~~aL~sll 133 (553)
-|+..-+-.|.+-|..|+ |.-||..+++.+-....|-+ .|++-+=+.|-+||.+-+..+ ...|=+.|..++
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI 600 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLI 600 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 345556667788888888 88899999999877665531 236667788899998855444 334444444443
Q ss_pred cc------chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHH
Q 008797 134 RQ------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKK 196 (553)
Q Consensus 134 k~------D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK 196 (553)
-. +=.+++-.++.++= ++.+++..+|-.+|.-|+.=+..++. .++++--++...|..
T Consensus 601 ~r~~e~I~P~~~~ivq~lp~LW--e~s~~e~lLr~alL~~L~~lV~alg~----qS~~~~~fL~pVIel 663 (978)
T KOG1993|consen 601 ERVSEHIAPYASTIVQYLPLLW--EESEEEPLLRCALLATLRNLVNALGA----QSFEFYPFLYPVIEL 663 (978)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH--hhhccCcHHHHHHHHHHHHHHHHhcc----CCccchHHHHHHHHH
Confidence 32 33455666666654 45556667899999888776766653 245777888888888
No 175
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=26.79 E-value=1.6e+03 Score=29.75 Aligned_cols=167 Identities=14% Similarity=0.180 Sum_probs=95.3
Q ss_pred cccHHHHH-HHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHH
Q 008797 203 DVTGAEFR-MFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLN 281 (553)
Q Consensus 203 dVT~eEF~-l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~ 281 (553)
|+|..... .+.+++.++|.|.|+.+. ......|..+|++.+.-.+...| ......+.
T Consensus 1205 D~t~~~lr~al~e~la~fPVYRtY~~~-----------------~~~~~~d~~~i~~a~~~Ar~~~~-----~~~~~~~~ 1262 (1693)
T PRK14507 1205 DFTRNALRRALAEIVARFPVYRTYLPP-----------------TEVSAEDVRYIEGAVRKAKRRSR-----LPDRSVHD 1262 (1693)
T ss_pred cCCHHHHHHHHHHHHHcCCccccCCCC-----------------CCCCHHHHHHHHHHHHHHHhhCC-----ccchHHHH
Confidence 66766654 689999999999987743 12233445555555544443221 11235666
Q ss_pred HHHhhhccCCC--CCChhhhhhHHHHHHHhCCCCCchhhhhh---hHHHHHHHHH--hcCCCCCCCCccchHHHHHHHHH
Q 008797 282 YLNKHIIPVFD--KLPEERKLDLLKALAEISPYTTPQDSRQI---LPSVAVLLKK--YMPLRKTGGEEMNFTYVECLLYT 354 (553)
Q Consensus 282 y~~~~IlP~l~--~l~~~~kl~lLK~lAe~s~~~~~~~a~~~---l~~i~~~L~~--~mP~~~~~~~~l~fs~vEcLL~a 354 (553)
|+-.-++.... .++++.+-..+....-+-+||++..|+-+ .=..|.-|+. -+...|. .+-.| .=+
T Consensus 1263 ~i~~~L~~~~~~~~~~~~~~~~~~~f~~rfQQ~tgpvmAKgvEDTaFYry~rL~slNEVGg~P~---~fg~~-----~~~ 1334 (1693)
T PRK14507 1263 FVRDVLLGRIDLGGAGHPLRQLVLRFRRRFQQFTAPVMAKSLEDTLFYRYVRLVSLNEVGGDPG---EFGLD-----AEH 1334 (1693)
T ss_pred HHHHHHcCCcccccccchhhHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhhhccCCCCcc---ccCCC-----HHH
Confidence 66665554332 23343333334444445556777665433 3345666654 3333221 11111 235
Q ss_pred HHHhhhc----CchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008797 355 FHHLAHK----APNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLT 413 (553)
Q Consensus 355 fh~L~~k----~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikkl~ 413 (553)
||+.... .|..|+.. =|. | .+|-+|-|+||..|++.-......++
T Consensus 1335 FH~~~~~R~~~~P~~m~at-----sTH--------D-tKRgEDvRARl~vLSE~p~eW~~~v~ 1383 (1693)
T PRK14507 1335 FHALNAARARDWPHAMLAT-----STH--------D-TKRSEDVRARILVLSEMPEEWRLALD 1383 (1693)
T ss_pred HHHHHHHHHHhCCccccch-----hhc--------c-ccccHHHHHHHHHHhcCHHHHHHHHH
Confidence 7766544 68888652 132 5 68899999999999999888777665
No 176
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=26.78 E-value=2.9e+02 Score=27.41 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHh
Q 008797 187 ERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA 266 (553)
Q Consensus 187 E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~A 266 (553)
|..++.+||+ ++ .++|.+|.++..+.+.-. .-.++.|-|++++..- --..-|++.|+.-.+-.|
T Consensus 55 E~lL~~LVk~---~i----Kk~~~~~~elv~~~~~~~--~~h~~iq~l~~iir~~-------Y~D~~D~~~rL~~tLa~a 118 (182)
T PF06861_consen 55 EALLCWLVKQ---SI----KKNFKQLAELVCQPSHNA--DKHAHIQWLMSIIRAV-------YRDHYDSWSRLCATLAYA 118 (182)
T ss_pred HHHHHHHHHH---HH----HHHHHHHHHHHhccCCCC--chhHHHHHHHHHHHHH-------HhchhhHHHHHHHHHHHH
Confidence 4566777777 54 589999999777665543 3447778788888753 112346788988877777
Q ss_pred hhhhccCCc---------hhhHHHHHHhhhccC
Q 008797 267 LPFFLRGAS---------GSKFLNYLNKHIIPV 290 (553)
Q Consensus 267 lp~fs~~v~---------st~f~~y~~~~IlP~ 290 (553)
.-|.-+.-. +..+-+|++.+=.+.
T Consensus 119 ~~y~~~~l~~d~e~~s~v~~~lA~Fy~~~r~~W 151 (182)
T PF06861_consen 119 SMYAMRNLLNDHENASLVSHALAHFYLRYRRAW 151 (182)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 666533322 344455555544443
No 177
>PHA02713 hypothetical protein; Provisional
Probab=26.38 E-value=2.3e+02 Score=32.32 Aligned_cols=104 Identities=9% Similarity=0.064 Sum_probs=62.6
Q ss_pred hhhHHHHHHHhc--CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHH
Q 008797 31 VKDYEGIIEAAK--TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVD 108 (553)
Q Consensus 31 ~~~y~~Il~~~k--gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaD 108 (553)
.+.-+.+|.++. .=+..|.++++|+.+.+.--==+.=-++=+.+. |.+-...++.-..+.++.+++. +|++.=..+
T Consensus 93 ~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~-~~~L~~~a~~~i~~~f~~v~~~-~ef~~L~~~ 170 (557)
T PHA02713 93 SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMS-HIPIVKYIKRMLMSNIPTLITT-DAFKKTVFE 170 (557)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHhCC-hhhhhCCHH
Confidence 345667777776 778899999999987665211111111111111 1122234666677888888874 588877888
Q ss_pred HHHHHHhhchh----HHHHHHHHHHHHHHccch
Q 008797 109 ILVQLLAAEEI----VERDAVHKALMSLLRQDV 137 (553)
Q Consensus 109 VL~QLLqsdd~----~E~~~v~~aL~sllk~D~ 137 (553)
-|.++|.+|+. .|-.+. +|++.-++.|+
T Consensus 171 ~l~~lL~~d~~l~v~~Ee~v~-eav~~W~~~d~ 202 (557)
T PHA02713 171 ILFDIISTNDNVYLYREGYKV-TILLKWLEYNY 202 (557)
T ss_pred HHHHHhccccccCCCcHHHHH-HHHHHHHhcCH
Confidence 88889988762 344444 45555555543
No 178
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=26.06 E-value=4.9e+02 Score=26.79 Aligned_cols=102 Identities=23% Similarity=0.285 Sum_probs=76.2
Q ss_pred ChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008797 30 NVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (553)
Q Consensus 30 ~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDV 109 (553)
..+.|...+.-+..=..+=-||..|+. ++++|+|-+. ..-.-+++..=+|..+|=-+--.|++++. .+-+.+|
T Consensus 86 ~~~~~~~~i~~~nnW~vvD~la~~~V~--~~~~~~li~~----~~a~~~~~~~w~rraaiv~~l~~~k~~~~-~~~if~i 158 (222)
T COG4912 86 TYEEYDQWINTVNNWAVVDTLANHFVG--IPLWPDLIEE----WAADAEEDNRWERRAAIVHQLVYKKKTLD-LLEIFEI 158 (222)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhhc--cccCHHHHHH----HHhccccchHHHHHHHHHHHHHHhcCccc-hhHHHHH
Confidence 336677777655555667788888887 8889887543 33444455556789999999999999864 4478888
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHccchH
Q 008797 110 LVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (553)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~D~k 138 (553)
-=++|.+.+.=..-++..+|.++-+..+.
T Consensus 159 ~E~~l~d~e~fV~KAigWaLrq~~k~~~e 187 (222)
T COG4912 159 IELLLGDKEFFVQKAIGWALRQIGKHSNE 187 (222)
T ss_pred HHHHccChHHHHHHHHHHHHHHHHhhchH
Confidence 88999998888889999999988885444
No 179
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=25.98 E-value=2.8e+02 Score=30.19 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=71.3
Q ss_pred hHHHHHHHhc--CCHHHHHHHhhhhhHHhcc--CC-CcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh--
Q 008797 33 DYEGIIEAAK--TSLKAKQLAAQLIPRFFKF--FP-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-- 105 (553)
Q Consensus 33 ~y~~Il~~~k--gs~k~K~LAaqfI~kffk~--FP-~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r-- 105 (553)
+|-.++...+ ...-|+.=|=.||.+|-.. .| ++..--+.|+..+.|++|-..|..++.-|-++|--+|+.+.+
T Consensus 68 d~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~g 147 (371)
T PF14664_consen 68 DIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECG 147 (371)
T ss_pred chhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcC
Confidence 3445555555 3455777777788777766 55 445667789999999999999999999999999999998765
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 008797 106 IVDILVQLLAAEEIVERDAVHKALMSLL 133 (553)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sll 133 (553)
..-+|.+.+..........+-.++..++
T Consensus 148 G~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 148 GIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred CHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 6788888877632233333333333333
No 180
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=25.70 E-value=7.2e+02 Score=30.40 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=21.8
Q ss_pred ChhhhHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 008797 386 DFSDCYKDFTERLTT----VEDLTRATMKKLTQGL 416 (553)
Q Consensus 386 D~~~~~kdFr~RLqy----l~~~~q~yikkl~~~l 416 (553)
.+.+++++|-+||.- |++..+.-+.+-+++.
T Consensus 769 ~~~e~~~~~ea~leaer~rl~erk~~R~eerk~~~ 803 (988)
T KOG2072|consen 769 EYEEKLKQFEARLEAERNRLAERKRARIEERKQAY 803 (988)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 346889999999874 5666666666666543
No 181
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=25.23 E-value=4.9e+02 Score=33.59 Aligned_cols=174 Identities=20% Similarity=0.306 Sum_probs=104.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhhhHHhccCCC-cchHHHHHhhhhh-----cccchhH----HH-------------HHhh
Q 008797 34 YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPD-LSSRAVDAHLDLI-----EEEELGV----RV-------------QAIR 90 (553)
Q Consensus 34 y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~-L~e~Ai~a~lDLc-----EDed~~I----R~-------------~aik 90 (553)
...|++..|.+-..+...++-.-|..+.=++ -.-.+||-++=|+ ++.-..| |+ ++++
T Consensus 344 ~~lil~~lks~lr~~k~l~eawiK~I~~~~~~~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~ 423 (1426)
T PF14631_consen 344 EKLILDVLKSGLRFSKDLSEAWIKAIESLEDASDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQTFK 423 (1426)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHGGGSTT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHhcCCCccccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHHHHh
Confidence 5788888887766555555555555553332 2334455433321 1111111 21 1223
Q ss_pred ccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc-ch---HHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 008797 91 GLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-DV---KASLTALFKHIGSVDEPSTDEFIREKVLS 166 (553)
Q Consensus 91 ~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D~---k~tL~~lf~qI~~~~e~~~eE~vREr~lk 166 (553)
+-+.+-+ +|.+-+-++.-.||.+.++..+.........+|.. |. ..+++.|..||. +|.+.--.-+|.
T Consensus 424 ~~~~vL~---~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~-----sg~~~ev~~aL~ 495 (1426)
T PF14631_consen 424 GHSEVLK---DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIG-----SGNSQEVDAALD 495 (1426)
T ss_dssp HHHHHHT---TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHH-----H--HHHHHHHHH
T ss_pred hhHHHHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHc-----CCcHHHHHHHHH
Confidence 3233333 56777888888899999999999999999888887 33 579999999997 455543355666
Q ss_pred HHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccC
Q 008797 167 FIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFG 223 (553)
Q Consensus 167 Fl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~ 223 (553)
.|+.=...- .+++..| ...|+.+|+.|.+.+-.....+|++|..|-.-+
T Consensus 496 vL~~L~~~~-------~~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 496 VLCELAEKN-------PSELQPF-ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHHHHH--------HHHHHHT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc-------HHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 665322111 1233333 557788888889999999988999988776544
No 182
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=25.17 E-value=46 Score=37.99 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=9.6
Q ss_pred CCCChhhhhhHHHHHHH
Q 008797 292 DKLPEERKLDLLKALAE 308 (553)
Q Consensus 292 ~~l~~~~kl~lLK~lAe 308 (553)
.+++...+.+++..|..
T Consensus 289 g~l~~~eR~~il~~Fr~ 305 (572)
T PRK04537 289 GDVPQKKRESLLNRFQK 305 (572)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 34455556666666654
No 183
>COG3945 Uncharacterized conserved protein [Function unknown]
Probab=24.95 E-value=1.9e+02 Score=28.88 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCC
Q 008797 232 KELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLP 295 (553)
Q Consensus 232 qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~ 295 (553)
.+++.++..-.++-..- +-|++.|.++|.+++.-..-+.++..-.-+|+||.....| +...|
T Consensus 21 lraL~iLr~~~~~~~~g-~i~y~~v~~iidFi~nfaDkcHH~KEE~~LF~~m~~~g~~-~~~~~ 82 (189)
T COG3945 21 LRALSILRKALDLIKNG-PIDYSDVKEIIDFIRNFADKCHHGKEEKLLFNYMEHEGGP-FEEGP 82 (189)
T ss_pred HHHHHHHHHHHhcccCC-CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-cccCc
Confidence 44555555544444444 6688999999999999888888888889999999999999 55554
No 184
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.84 E-value=5.9e+02 Score=25.98 Aligned_cols=50 Identities=14% Similarity=0.184 Sum_probs=37.2
Q ss_pred ChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcc
Q 008797 30 NVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEE 79 (553)
Q Consensus 30 ~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcED 79 (553)
+.+-|+-+|.......=....|++.|.+..-++|.+....+-++.++|=|
T Consensus 5 r~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~ 54 (223)
T PF14675_consen 5 RFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVD 54 (223)
T ss_dssp HHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44568888998884444456899999999999999999988888888753
No 185
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=24.80 E-value=1.5e+02 Score=26.00 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008797 85 RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (553)
Q Consensus 85 R~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (553)
=...|..|-.+|.++..+.+.|++++.+.+..-.+.-.
T Consensus 17 S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~K 54 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQK 54 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 34678888889999988899999999888877666333
No 186
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=24.79 E-value=1.1e+02 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=25.0
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHccchHH
Q 008797 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (553)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~ 139 (553)
-||.|.|.+.|.. +...-.++.++|+.+|..
T Consensus 9 NVll~fl~~~e~~-r~~ll~vi~tlL~fs~~e 39 (46)
T smart00755 9 NVLLQFLTLRESE-RETLLKVISTVLQLSPEE 39 (46)
T ss_pred HHHHHHhccCcch-HHHHHHHHHHHhCCCHHH
Confidence 3789999998865 777778899999888764
No 187
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.79 E-value=7.9e+02 Score=29.83 Aligned_cols=210 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred HhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccC
Q 008797 72 AHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSV 151 (553)
Q Consensus 72 a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~ 151 (553)
.++.|.++..+.+.+-|+..|..+...-=-.|+.-....-+|+-.++..|+..+ .=.++.+|-.+.
T Consensus 8 ~lialL~e~~~~lk~~Al~~in~vVd~~WpEIsd~l~~IE~lyed~~F~er~~A------------aL~~SKVyy~Lg-- 73 (929)
T KOG2062|consen 8 GLIALLREPEPSLKVHALFKINNVVDQFWPEISDSLPKIESLYEDETFPERQLA------------ALLASKVYYYLG-- 73 (929)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHhccCCCchhHHH------------HHHHHHHHHHHH--
Q ss_pred CCCCChHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHH
Q 008797 152 DEPSTDEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERM 231 (553)
Q Consensus 152 ~e~~~eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~ 231 (553)
-=|++|+| .|+..-.-.-.+--+|+.+.|-| ++
T Consensus 74 --------eye~Al~y------AL~ag~~F~Vd~~S~y~etivak---~i------------------------------ 106 (929)
T KOG2062|consen 74 --------EYEDALEY------ALRAGDDFDVDENSDYVETIVAK---CI------------------------------ 106 (929)
T ss_pred --------HHHHHHHH------HHcCCccccccCccchhhHHHHH---HH------------------------------
Q ss_pred HHHHHHHHHhhhccccCCCCCh---HHHHHHHH-HHHH-hhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHH
Q 008797 232 KELIGIIEGQADLDAQFNVSDA---DHIDRLIS-CLYM-ALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKAL 306 (553)
Q Consensus 232 qeLv~~i~eqa~Ld~~f~~sd~---d~idrli~-cl~~-Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~l 306 (553)
...++-..++.+.+.+-++-|+ +.|+|+|+ |+.- =..+.-.-.-.++=+..+-+-+++ .+........+|.++
T Consensus 107 d~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~--~d~~~~~~~yll~l~ 184 (929)
T KOG2062|consen 107 DMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILK--SDSVIGNLTYLLELL 184 (929)
T ss_pred HHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhcc--ccccchHHHHHHHHH
Q ss_pred HHhCCCCCchhhhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHH
Q 008797 307 AEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLY 353 (553)
Q Consensus 307 Ae~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~ 353 (553)
--+.. +.+=....|+-+++.|||.|.+ .-|+.++|+.|
T Consensus 185 ~s~v~-----~~efR~~vlr~lv~~y~~~~~P----Dy~~vc~c~v~ 222 (929)
T KOG2062|consen 185 ISLVN-----NREFRNKVLRLLVKTYLKLPSP----DYFSVCQCYVF 222 (929)
T ss_pred HHHHh-----hHHHHHHHHHHHHHHHccCCCC----CeeeeeeeeEE
No 188
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=24.71 E-value=1.3e+03 Score=27.91 Aligned_cols=266 Identities=17% Similarity=0.233 Sum_probs=138.7
Q ss_pred hhhHHHHHHHhcCCHHHHHHHhhhhhHHhcc-----CCCcchHH-HHHhhhhhcccchhHHHHHhhc----cccccccCc
Q 008797 31 VKDYEGIIEAAKTSLKAKQLAAQLIPRFFKF-----FPDLSSRA-VDAHLDLIEEEELGVRVQAIRG----LPLFCKDTP 100 (553)
Q Consensus 31 ~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~-----FP~L~e~A-i~a~lDLcEDed~~IR~~aik~----Lp~lck~~~ 100 (553)
..-|..++.-.... .-..+|+-+.+|=.+ ||+....- +-++-.||.|...-||...--. .|.+-|++.
T Consensus 357 ~~~~~~l~~~~~~e--~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~t 434 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWE--VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERT 434 (759)
T ss_pred hhhHHHHhcchhhh--hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcC
Confidence 44444444433322 222344444444332 55555544 4899999999999999776443 355556644
Q ss_pred chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc-c---hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccch
Q 008797 101 EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-D---VKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLK 176 (553)
Q Consensus 101 e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-D---~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~ 176 (553)
++-.-.++..+|+.+.+..+.-...-|..+... + ......+++..|....+. ...-+|..++.|+-....++.
T Consensus 435 --i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d-~~wRvr~ail~~ip~la~q~~ 511 (759)
T KOG0211|consen 435 --ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED-LLWRVRLAILEYIPQLALQLG 511 (759)
T ss_pred --ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc-hhHHHHHHHHHHHHHHHHhhh
Confidence 666788889999999988877776544333222 1 122333444444421111 124578888988888777766
Q ss_pred hhhcCChHHHHHHHHHHHHHHhhhccc-ccH--HHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCCh
Q 008797 177 AELLKPQEEMERHITDLIKKVLQSLED-VTG--AEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDA 253 (553)
Q Consensus 177 ~e~l~~~eE~E~~i~~~ikK~~~vL~d-VT~--eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~ 253 (553)
.+.+.+ ..- ..+.. -|.| |.. +--...+..+ ...|+. . --+ ++++-.+..+ ..++
T Consensus 512 ~~~~~~--~~~----~l~~~---~l~d~v~~Ir~~aa~~l~~l--~~~~G~-~-w~~-~~~i~k~L~~--~~q~------ 569 (759)
T KOG0211|consen 512 VEFFDE--KLA----ELLRT---WLPDHVYSIREAAARNLPAL--VETFGS-E-WAR-LEEIPKLLAM--DLQD------ 569 (759)
T ss_pred hHHhhH--HHH----HHHHh---hhhhhHHHHHHHHHHHhHHH--HHHhCc-c-hhH-HHhhHHHHHH--hcCc------
Confidence 444421 111 11111 1111 000 0000011111 112221 1 112 4444333322 1111
Q ss_pred HHHHHH--HHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCC---C-hhhhhhHHHHHHHhCCCCCchhhhhhhHHHHH
Q 008797 254 DHIDRL--ISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL---P-EERKLDLLKALAEISPYTTPQDSRQILPSVAV 327 (553)
Q Consensus 254 d~idrl--i~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l---~-~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~ 327 (553)
-+.-|. +.|+....+.++. .++|++++|.+..+ | +..|+.++|.|-.+-++-.....+..+-++.+
T Consensus 570 ~y~~R~t~l~si~~la~v~g~--------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~ 641 (759)
T KOG0211|consen 570 NYLVRMTTLFSIHELAEVLGQ--------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLE 641 (759)
T ss_pred ccchhhHHHHHHHHHHHHhcc--------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 122222 3344444444443 45788999988777 2 26899999999999998777666656555555
Q ss_pred HHHH
Q 008797 328 LLKK 331 (553)
Q Consensus 328 ~L~~ 331 (553)
.|..
T Consensus 642 ~L~~ 645 (759)
T KOG0211|consen 642 TLSS 645 (759)
T ss_pred Hhcc
Confidence 5543
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=24.68 E-value=73 Score=35.93 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=14.8
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCC
Q 008797 471 SVNLSWKEATKPSVPSTTTASGGKRPA 497 (553)
Q Consensus 471 ~i~lSW~~~~k~~~~~~~~~~~gkr~~ 497 (553)
++-+=|.-+.|+-.+.++...|-++|.
T Consensus 260 ~l~~~~ynptk~~~~~~~~fag~~~pt 286 (526)
T KOG2135|consen 260 TLPPPGYNPTKPKDEVKAAFAGRCLPT 286 (526)
T ss_pred cCCCCCcCCCCCCCCccccCccccCCC
Confidence 345555555555544445566656664
No 190
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=24.56 E-value=3.6e+02 Score=28.48 Aligned_cols=156 Identities=21% Similarity=0.322 Sum_probs=81.6
Q ss_pred hHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHH------HHHHHccchHHHHHHHHHhhccCCCCCC
Q 008797 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKA------LMSLLRQDVKASLTALFKHIGSVDEPST 156 (553)
Q Consensus 83 ~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~a------L~sllk~D~k~tL~~lf~qI~~~~e~~~ 156 (553)
..|..-|+.|-.+|..+.-|+| ++-.|+.+|.+-+..... +.+ +...++..+.-.=+.-|
T Consensus 129 Plrlh~ir~L~~L~~~t~~fIP-l~~~lleiL~~~~~~~~~--k~~~~kp~d~~~~Lk~~k~~l~t~~~----------- 194 (299)
T PF03715_consen 129 PLRLHCIRSLNRLSQSTGTFIP-LAPYLLEILESSEFNKKP--KKSSMKPLDFECLLKVSKSQLRTRQF----------- 194 (299)
T ss_pred chHHHHHHHHHHHHHhcCceEe-cHHHHHHHHhChhhcCCC--CCCCCCCcCHHHHhhccHHHhccHHH-----------
Confidence 4789999999999988887765 334444444443211110 011 22223332221111111
Q ss_pred hHHHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHH
Q 008797 157 DEFIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIG 236 (553)
Q Consensus 157 eE~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~ 236 (553)
-|.+.+.++.-|.+.+......+-= .|+---++..+|+ .+.......|.. .++.|++
T Consensus 195 ~d~v~e~~~~LL~e~la~~s~sIaF--PEl~~pii~~LKr---~~K~~k~~~~~~------------------~ik~Li~ 251 (299)
T PF03715_consen 195 QDGVIEEVYELLLEYLAIYSYSIAF--PELALPIIVQLKR---FLKSCKNAKFKR------------------QIKQLID 251 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc--hhhHHHHHHHHHH---HHHHcccHHHHH------------------HHHHHHH
Confidence 1234555555555555444333321 2665666666677 444444444432 2345555
Q ss_pred HHHHhhh------ccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHH
Q 008797 237 IIEGQAD------LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLN 284 (553)
Q Consensus 237 ~i~eqa~------Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~ 284 (553)
-+.++++ -.-.|.+.|.+.|+.+.+.++ ..+|++-.|+.
T Consensus 252 kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~---------~~~tPl~~~~~ 296 (299)
T PF03715_consen 252 KIEENSKFIESKRSKVDFSPKDQAQVEAFESELK---------WEGTPLGKYYA 296 (299)
T ss_pred HHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhcc---------cCCCCHHHHHH
Confidence 5555533 234599999999998887443 34566666664
No 191
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=24.46 E-value=97 Score=35.85 Aligned_cols=10 Identities=0% Similarity=0.268 Sum_probs=8.4
Q ss_pred Cccccccccc
Q 008797 470 KSVNLSWKEA 479 (553)
Q Consensus 470 ~~i~lSW~~~ 479 (553)
..|.++|..+
T Consensus 297 r~I~V~~Akp 306 (578)
T TIGR01648 297 SEIEVTLAKP 306 (578)
T ss_pred EEEEEEEccC
Confidence 6999999865
No 192
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=24.24 E-value=1.2e+03 Score=27.22 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=24.9
Q ss_pred HHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCC
Q 008797 259 LISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKL 294 (553)
Q Consensus 259 li~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l 294 (553)
.|+|+..+..-++.....+..+..+..+|=-+.+.|
T Consensus 463 ~iNCl~~i~s~L~~~~~~~~~~e~L~~~id~~~~~L 498 (618)
T PF06419_consen 463 MINCLDLIQSTLSPFEFTSERVEELQDQIDAHVDTL 498 (618)
T ss_pred HHHhHHHHHHHccChHhHHHHHHHHHHHHHHHHHHH
Confidence 578888888777777766677777776665544444
No 193
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=23.93 E-value=1.4e+03 Score=28.10 Aligned_cols=168 Identities=15% Similarity=0.195 Sum_probs=93.5
Q ss_pred ccccHHHH-HHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHH
Q 008797 202 EDVTGAEF-RMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFL 280 (553)
Q Consensus 202 ~dVT~eEF-~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~ 280 (553)
.|+|.... ..+.+++.++|.|.|+.+. ......|...|+..+.-.+...|- .....+
T Consensus 420 rD~t~~~l~~al~e~la~fpVYRtY~~~-----------------~~~~~~d~~~i~~a~~~ar~~~~~-----~~~~~~ 477 (879)
T PRK14511 420 RDFTLGALRRALVELIAAFPVYRTYLPA-----------------CGRSARDRQVIEQAAARARRRLPE-----ADWPVL 477 (879)
T ss_pred ccCCHHHHHHHHHHHHHcCCccCcCCCC-----------------CCCCHHHHHHHHHHHHHHHHhCCc-----cchHHH
Confidence 36676655 4689999999999987742 122233444455444433332221 123455
Q ss_pred HHHHhhhccCC-CCCChhhhhhHHHHHHHhCCCCCchhhhhh---hHHHHHHHHH--hcCCCCCCCCccchHHHHHHHHH
Q 008797 281 NYLNKHIIPVF-DKLPEERKLDLLKALAEISPYTTPQDSRQI---LPSVAVLLKK--YMPLRKTGGEEMNFTYVECLLYT 354 (553)
Q Consensus 281 ~y~~~~IlP~l-~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~---l~~i~~~L~~--~mP~~~~~~~~l~fs~vEcLL~a 354 (553)
.|+-.-++... ..++++.+-..+....-+-++|++..|+-. .=..|.-|+. -+...|. .+-.| + =+
T Consensus 478 ~~l~~~L~~~~~~~~~~~~~~~~~~f~~rfQQ~tgpvmAKgvEDTaFYry~rL~slNEVGg~P~---~f~~s-~----~~ 549 (879)
T PRK14511 478 DFLEDVLLGRAARELPRGRRKLRLEFAVRFQQLTGPVMAKGVEDTAFYRYNRLLSLNEVGGDPE---RFSAS-V----ED 549 (879)
T ss_pred HHHHHHhcCCccccCchhhhHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhhhhhccCCCCcc---ccCCC-H----HH
Confidence 66665555433 223443333334444445566777665433 3345555553 3333331 11111 2 35
Q ss_pred HHHhhh----cCchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008797 355 FHHLAH----KAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLT 413 (553)
Q Consensus 355 fh~L~~----k~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikkl~ 413 (553)
||.... ..|..|+.. =|. | .+|-+|-|+||..|++.-...-..+.
T Consensus 550 FH~~~~~R~~~~P~~m~at-----sTH--------D-TKRgEDvRARi~vLSE~p~~W~~~v~ 598 (879)
T PRK14511 550 FHAANAERLRRFPHSMLTT-----STH--------D-TKRGEDVRARISVLSELPDEWAAAVE 598 (879)
T ss_pred HHHHHHHHHHhCCccccch-----hhc--------c-ccccHHHHHHHHHHhcCHHHHHHHHH
Confidence 776654 478888652 132 5 68899999999999999888776664
No 194
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.92 E-value=1.4e+03 Score=27.91 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=69.2
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHH------hhhhhcccchhHHHHHhhcccccc------
Q 008797 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDA------HLDLIEEEELGVRVQAIRGLPLFC------ 96 (553)
Q Consensus 30 ~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a------~lDLcEDed~~IR~~aik~Lp~lc------ 96 (553)
-..+-..|+.+.. .+--+|.=+|.-+.|-+++-|+........ ++-=.-| ++.|=..+=.+++.|.
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHh
Confidence 4455677777777 556688999999999999888443322221 1111112 2223222222222222
Q ss_pred -ccC---cchhhhHHHHHHHHHhh------chhHHHHHHHHHHHHHHccchHHHHHHHH
Q 008797 97 -KDT---PEYLSKIVDILVQLLAA------EEIVERDAVHKALMSLLRQDVKASLTALF 145 (553)
Q Consensus 97 -k~~---~e~~~riaDVL~QLLqs------dd~~E~~~v~~aL~sllk~D~k~tL~~lf 145 (553)
..+ +.+.+--=+|+.+||.. .+..=|.++..||+++++.-|+.+...+.
T Consensus 483 ~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~ 541 (859)
T KOG1241|consen 483 AVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ 541 (859)
T ss_pred ccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 222 12234566788888876 23456889999999999999888776653
No 195
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.88 E-value=1.8e+02 Score=33.54 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCcCCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 008797 346 TYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAA 425 (553)
Q Consensus 346 s~vEcLL~afh~L~~k~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikkl~~~l~~~~K~~~~ 425 (553)
.-+|+++|++++|+.|-...|.++ +| + .++.+-.-...=++++.......+.+|.-+|..
T Consensus 29 ~~~~~~~FaaqTlr~Ki~~~F~~L--------p~-~----~~~slrdsl~thl~~l~~~~~~i~tQL~vavA~------- 88 (559)
T KOG2081|consen 29 CDVEALLFAAQTLRNKIQYDFSEL--------PP-L----THASLRDSLITHLKELHDHPDVIRTQLAVAVAA------- 88 (559)
T ss_pred chHHHHHHHHHHHHHHHHhhHHhc--------Cc-c----hhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH-------
Confidence 457999999999999988888764 22 1 122222223334566666666566666666643
Q ss_pred cCChHHHHHHHhhhccchhhhhhh--cc-HHHHhhhhhcCCCC
Q 008797 426 AKTDEAKEKIKTQKQNTTTGLRTC--NN-ILAMSKPLHSKTPS 465 (553)
Q Consensus 426 ~k~ee~k~k~~~~~q~~~~aL~~~--~N-I~~li~~L~~~pPs 465 (553)
-|+++. +| |..+++.+.++||+
T Consensus 89 ------------------Lal~~~~W~n~I~e~v~~~~~~~~~ 113 (559)
T KOG2081|consen 89 ------------------LALHMPEWVNPIFELVRALSNKHPA 113 (559)
T ss_pred ------------------HHHHhHhhcchHHHHHHHhhcCCcc
Confidence 245554 58 99999999999988
No 196
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=23.23 E-value=1.6e+03 Score=28.32 Aligned_cols=256 Identities=18% Similarity=0.147 Sum_probs=140.4
Q ss_pred ccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch-hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccch-
Q 008797 60 KFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV- 137 (553)
Q Consensus 60 k~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~-~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~- 137 (553)
+-=-|...+-+..++.|-||-...|.--|+|=|-.+...-|++ +.-++|-|+-=+.+...+=++.-.-+|......=|
T Consensus 39 ~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 39 KLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred hccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence 3344566677889999999999999999999998887777766 55688888877777766777776666666554422
Q ss_pred ----------HHHHHHHHHhhccCCCCCChH-HHHHHHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccH
Q 008797 138 ----------KASLTALFKHIGSVDEPSTDE-FIREKVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTG 206 (553)
Q Consensus 138 ----------k~tL~~lf~qI~~~~e~~~eE-~vREr~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~ 206 (553)
-.++++.|.+-.. .+++. .++=.++.-|.+-+-..+.-+- +.+.-|+....- -|+.--.
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~---~qe~~sai~~e~lDil~d~lsr~g~ll~----~fh~~il~~l~~---ql~s~R~ 188 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAIS---KQEDVSAIKCEVLDILADVLSRFGTLLP----NFHLSILKCLLP---QLQSPRL 188 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhh---hcccchhhHHHHHHHHHHHHHhhcccCc----chHHHHHHHHhh---cccChHH
Confidence 2234444544432 12222 3565566555553333221111 122222211111 1111000
Q ss_pred HHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhh----hhh-ccCCchhhHHH
Q 008797 207 AEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMAL----PFF-LRGASGSKFLN 281 (553)
Q Consensus 207 eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Al----p~f-s~~v~st~f~~ 281 (553)
.=-..-...++.|-++- +. .-.++++..- |+..-++..+..+.-.|+|+-... .=| ++.....+++.
T Consensus 189 aVrKkai~~l~~la~~~---~~---~ly~~li~~L--l~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~ 260 (1233)
T KOG1824|consen 189 AVRKKAITALGHLASSC---NR---DLYVELIEHL--LKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVA 260 (1233)
T ss_pred HHHHHHHHHHHHHHHhc---CH---HHHHHHHHHH--HhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHH
Confidence 00001112233333331 21 2233333321 223333456677888888875442 222 44444577777
Q ss_pred HHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCCCCC
Q 008797 282 YLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKT 338 (553)
Q Consensus 282 y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~ 338 (553)
=||+++ +.-|++.+--.|.+|--+-.+|.. +.-.+.|.|.+++.+|+--.|.
T Consensus 261 ~y~~~~----e~~dDELrE~~lQale~fl~rcp~-ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 261 DYCNKI----EEDDDELREYCLQALESFLRRCPK-EILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred HHhccc----ccCcHHHHHHHHHHHHHHHHhChh-hhcccchHHHHHHHHHhccCCC
Confidence 778777 444555565666666666666543 3445789999999999977664
No 197
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=22.89 E-value=53 Score=37.91 Aligned_cols=9 Identities=0% Similarity=0.180 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q 008797 253 ADHIDRLIS 261 (553)
Q Consensus 253 ~d~idrli~ 261 (553)
.+..++.|.
T Consensus 109 ~e~A~~Ai~ 117 (578)
T TIGR01648 109 KEEAKEAVK 117 (578)
T ss_pred HHHHHHHHH
Confidence 333343333
No 198
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=22.68 E-value=79 Score=21.27 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=21.9
Q ss_pred hHHHHHhhccccccccCcchhhhHHHHHHHHHhh
Q 008797 83 GVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (553)
Q Consensus 83 ~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqs 116 (553)
.||..|+..|-.+.- ++..+.|.++|++
T Consensus 2 ~vR~~aa~aLg~~~~------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC------HhHHHHHHHHhcC
Confidence 589999999998843 4677888888865
No 199
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=22.57 E-value=1.3e+03 Score=27.39 Aligned_cols=115 Identities=13% Similarity=0.201 Sum_probs=62.9
Q ss_pred HHhhhhhHHhc-cCCCcchHHHHH-hhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchh-H------
Q 008797 50 LAAQLIPRFFK-FFPDLSSRAVDA-HLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI-V------ 120 (553)
Q Consensus 50 LAaqfI~kffk-~FP~L~e~Ai~a-~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~-~------ 120 (553)
|-.-+.+|+.. +|+.+..+.|.. +-..|+.+...+--.|++.|-..|.+.+.. .-.+|-|.+..... .
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~---Al~lldqaia~~~~~it~~~v~ 238 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRD---ALSLTDQAIASGNGQVTTDDVS 238 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH---HHHHHHHHHHhcCCCcCHHHHH
Confidence 33456666543 477786666654 456677776667778888888888887643 22333233322110 0
Q ss_pred ------HHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 121 ------ERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 121 ------E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
..+.+.+-|..+.+.|+...+..+ .++.. ...+-+.+=+.++.|+++
T Consensus 239 ~~lg~~d~~~~~~ll~al~~~d~~~~l~~~-~~l~~--~g~d~~~~L~~l~~~lrd 291 (647)
T PRK07994 239 AMLGTLDDDQALSLLEALVEGDGERVMALI-NQLAE--RGPDWEGLLVELLELLHR 291 (647)
T ss_pred HHHccCCHHHHHHHHHHHHcCCHHHHHHHH-HHHHH--hCCCHHHHHHHHHHHHHH
Confidence 022345555666677877776655 33331 112222344566666665
No 200
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=22.38 E-value=2e+02 Score=27.41 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=38.9
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc-chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008797 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (553)
Q Consensus 32 ~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L-~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDV 109 (553)
...-.+|..+. .++.+..-+-+++... |.+ -.+|+.=+-.-+ .|+.||.-|++-|-.+..+ .+...
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W----~~~~~~~aL~LL~~~~--~~~~vr~yAv~~L~~~~~~------~l~~y 106 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWW----APLSPEDALELLSPKY--PDPVVRQYAVRVLESASDD------ELLLY 106 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcC----CCCCHHHHHHHcCCcC--CCHHHHHHHHHHHHhCCHH------HHHHH
Confidence 44444555555 3444444444444443 222 223333332222 3478999999888774432 56777
Q ss_pred HHHHHhh
Q 008797 110 LVQLLAA 116 (553)
Q Consensus 110 L~QLLqs 116 (553)
|-||.|+
T Consensus 107 lpQLVQa 113 (152)
T cd00864 107 LPQLVQA 113 (152)
T ss_pred HHHHHHH
Confidence 7777665
No 201
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=22.00 E-value=1.2e+02 Score=28.33 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=35.2
Q ss_pred HHhhhhhHHhccCCC--cchHHHHHhhhhhcccchhHHHHHhhccc
Q 008797 50 LAAQLIPRFFKFFPD--LSSRAVDAHLDLIEEEELGVRVQAIRGLP 93 (553)
Q Consensus 50 LAaqfI~kffk~FP~--L~e~Ai~a~lDLcEDed~~IR~~aik~Lp 93 (553)
.+|..+.+||+..|+ +-.+.++.++++|...+..-|+.+++.+.
T Consensus 58 ~va~~lK~~Lr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (174)
T smart00324 58 DVAGLLKLFLRELPEPLIPYELYEEFIEAAKVEDETERLRALRELI 103 (174)
T ss_pred HHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 578889999999998 56778999999998777777766666543
No 202
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=21.94 E-value=1.2e+02 Score=29.10 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=47.6
Q ss_pred CcccccCCCCCcCCcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhc
Q 008797 371 GYKIVTGQPSDRLGEDFSDCYKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCN 450 (553)
Q Consensus 371 g~k~~Tgqpsd~lgeD~~~~~kdFr~RLqyl~~~~q~yikkl~~~l~~~~K~~~~~k~ee~k~k~~~~~q~~~~aL~~~~ 450 (553)
||++||= ++. ++-|..|..|..-..--.-.||+++-....+ ...=+..+-+.=.++. ..==+++|
T Consensus 23 ~~kvVsv----RLT---e~Ey~~L~~rA~~aGlS~SEfIRqAi~~~~g--~V~v~r~T~e~~~~li------r~l~gian 87 (147)
T PRK13858 23 GFKVVST----RLR---SAEYESFSAQARLLGLSDSMAIRVAVRRIGG--FLEIDAETREKMEAIL------QSIGTLSS 87 (147)
T ss_pred CCeEEEE----ecC---HHHHHHHHHHHHHcCCCHHHHHHHHHHhcCC--eEeecccCHHHHHHHH------HHHHHHHH
Confidence 7887763 344 4668889888887776666688766433222 1110111211110221 11125688
Q ss_pred cHHHHhhhhhcCC-CCcc
Q 008797 451 NILAMSKPLHSKT-PSFI 467 (553)
Q Consensus 451 NI~~li~~L~~~p-Psf~ 467 (553)
|+|.|.+.+..+| |-|.
T Consensus 88 NLNQLAr~aN~~~~~~~~ 105 (147)
T PRK13858 88 NIAALLSAYAENPRPDLE 105 (147)
T ss_pred HHHHHHHHHhcCCCCcHH
Confidence 9999999999987 6554
No 203
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=21.54 E-value=2.7e+02 Score=26.98 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=53.4
Q ss_pred HHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchH
Q 008797 71 DAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (553)
Q Consensus 71 ~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k 138 (553)
+.++++|-+.+..||..|++=|-.+-+-+=-|=...+-.|.-|..+.++.-+..+...|..+..-.+-
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 46899999999999999999888777765444456788888777777888888887777777766654
No 204
>PRK12678 transcription termination factor Rho; Provisional
Probab=21.50 E-value=72 Score=37.27 Aligned_cols=8 Identities=50% Similarity=0.655 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 008797 233 ELIGIIEG 240 (553)
Q Consensus 233 eLv~~i~e 240 (553)
+||..|.+
T Consensus 50 eLI~AI~~ 57 (672)
T PRK12678 50 ELIAAIKE 57 (672)
T ss_pred HHHHHHHH
Confidence 35555544
No 205
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=21.34 E-value=85 Score=30.84 Aligned_cols=7 Identities=57% Similarity=0.824 Sum_probs=3.5
Q ss_pred cCCCCCC
Q 008797 498 SINGSGN 504 (553)
Q Consensus 498 ~~~g~~~ 504 (553)
++.|+.|
T Consensus 183 sgdgG~~ 189 (215)
T PF05084_consen 183 SGDGGGN 189 (215)
T ss_pred CCCCCCC
Confidence 3455555
No 206
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=21.29 E-value=1.4e+03 Score=27.13 Aligned_cols=92 Identities=13% Similarity=0.163 Sum_probs=47.5
Q ss_pred HHHHHHHhhhhhhccccccChh-hHHHHHHHhcCCHH------------------HHHHHhhhhhHHhccCCCcchHHHH
Q 008797 11 IEKLYEFGERLNEAKDKSQNVK-DYEGIIEAAKTSLK------------------AKQLAAQLIPRFFKFFPDLSSRAVD 71 (553)
Q Consensus 11 ie~LY~~~~~L~~akdk~~~~~-~y~~Il~~~kgs~k------------------~K~LAaqfI~kffk~FP~L~e~Ai~ 71 (553)
-.-+|....-++++-++-+|.. .-+..+-|.--.++ +-+=--.||.+|| | .-+|
T Consensus 429 Awc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY---~----ai~~ 501 (858)
T COG5215 429 AWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFY---L----AILN 501 (858)
T ss_pred HHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHH---H----HHHH
Confidence 3446777777777777755543 22222333322222 2222233444443 2 3355
Q ss_pred Hhh---hhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHH
Q 008797 72 AHL---DLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL 113 (553)
Q Consensus 72 a~l---DLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QL 113 (553)
+++ ++. +.|.+.|+.++-.|-.+--=-|+ -|+|+++-.
T Consensus 502 ~Lv~~t~~~-~Ne~n~R~s~fsaLgtli~~~~d---~V~~~~a~~ 542 (858)
T COG5215 502 ALVKGTELA-LNESNLRVSLFSALGTLILICPD---AVSDILAGF 542 (858)
T ss_pred HHHHHHHhh-ccchhHHHHHHHHHHHHHhhcch---hHHHHHHHH
Confidence 555 455 77888999888777654421111 366776643
No 207
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.86 E-value=8.8e+02 Score=24.53 Aligned_cols=122 Identities=18% Similarity=0.281 Sum_probs=64.3
Q ss_pred cccccccCcchhhhHHHHHHHHHhhch----hHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 008797 92 LPLFCKDTPEYLSKIVDILVQLLAAEE----IVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSF 167 (553)
Q Consensus 92 Lp~lck~~~e~~~riaDVL~QLLqsdd----~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkF 167 (553)
+...| ++++-+....+.+-+++...+ ...-+.-...+...++........-++..... ..+...|.++|.=
T Consensus 136 ~~~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~a 210 (324)
T PF11838_consen 136 LSLAC-GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSA 210 (324)
T ss_dssp HHHHH-T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHH
T ss_pred HHHhc-cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHh
Confidence 45566 777777777788888887533 23444555567777777767667777777763 2234456666652
Q ss_pred HHhhcccchhhhcCChHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHh
Q 008797 168 IRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLED--VTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQ 241 (553)
Q Consensus 168 l~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~d--VT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eq 241 (553)
|. . .++++.-..+ +.. +|.+ |...+...+|.-+.+ .++.|| ..+.+++.+.
T Consensus 211 La----~------~~d~~~~~~~---l~~---~l~~~~v~~~d~~~~~~~~~~------~~~~~~-~~~~~~~~~n 263 (324)
T PF11838_consen 211 LA----C------SPDPELLKRL---LDL---LLSNDKVRSQDIRYVLAGLAS------SNPVGR-DLAWEFFKEN 263 (324)
T ss_dssp HT----T-------S-HHHHHHH---HHH---HHCTSTS-TTTHHHHHHHHH-------CSTTCH-HHHHHHHHHC
T ss_pred hh----c------cCCHHHHHHH---HHH---HcCCcccccHHHHHHHHHHhc------CChhhH-HHHHHHHHHH
Confidence 22 1 1233333333 333 3333 667766555544421 134455 5566777654
No 208
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=20.82 E-value=7.3e+02 Score=29.34 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhccccCCCC------chhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCc-----h
Q 008797 208 EFRMFMDFLKSLSLFGEKA------PTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALPFFLRGAS-----G 276 (553)
Q Consensus 208 EF~l~m~lL~sl~~~~~~s------~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~-----s 276 (553)
.+..+.+++.++.--.... ..+|.+.|++.+....++-..| ...+-+++.-.++.--|..-|.. -
T Consensus 6 ~~~~L~~Lv~wlR~~~~~~~~~~~~a~~rl~~Ll~~L~~~p~~~~~l----~~~l~~~l~~~~~~~L~~d~Gi~~~~gF~ 81 (643)
T PF10136_consen 6 RHDWLIDLVDWLRPADPDDDDSVAAAHARLRALLDVLERNPELRAAL----RRYLRRLLRERRQYPLLTDSGILSRSGFF 81 (643)
T ss_pred HHHHHHHHHHHhCccCCCCccccchHHHHHHHHHHHHHhCHHHHHHH----HHHHHHHHhcCCcchHHHhcCCCCCccHH
Confidence 3445566666666332221 3467777888887653333222 12233333322222223333333 3
Q ss_pred hhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchh
Q 008797 277 SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQD 317 (553)
Q Consensus 277 t~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~ 317 (553)
+++..=+-++++|..- +.-++--+|..+ |+.+.|
T Consensus 82 ~El~~Rl~~r~lP~~~-----d~~~l~~lf~~l--F~~~~D 115 (643)
T PF10136_consen 82 SELSRRLYERLLPAPP-----DPNDLSDLFNLL--FPRPSD 115 (643)
T ss_pred HHHHHHHHhhcCCCCC-----ChhHHHHHHHHH--CCCCCc
Confidence 4444455557777322 334555666666 556655
No 209
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.69 E-value=2.2e+02 Score=29.57 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=41.3
Q ss_pred chHHHHHhhhhhcccchh--HHHHHhhccccccccCcchhhhHHHHHHHHHhh
Q 008797 66 SSRAVDAHLDLIEEEELG--VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA 116 (553)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~--IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqs 116 (553)
.+-.++.+.++++|++.. ||..|+++|..+...+|..-..++..+.+++..
T Consensus 109 ~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 109 GDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344567778889988866 799999999999999987666688888888865
No 210
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=20.65 E-value=1.6e+03 Score=27.50 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=46.9
Q ss_pred hHHHHHhhcccccccc-----Ccchhh-hHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHH
Q 008797 83 GVRVQAIRGLPLFCKD-----TPEYLS-KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALF 145 (553)
Q Consensus 83 ~IR~~aik~Lp~lck~-----~~e~~~-riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf 145 (553)
-||...++-|-...-+ .|.|+. |+|-||+-|.-.+-|.=-.-+=-.|++++..||.+...-+|
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dff 149 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFF 149 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHH
Confidence 4777666554433333 256665 59999999999999988888889999999999999444444
No 211
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=20.45 E-value=90 Score=37.25 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=5.5
Q ss_pred HHHHHhhcccc
Q 008797 212 FMDFLKSLSLF 222 (553)
Q Consensus 212 ~m~lL~sl~~~ 222 (553)
||.+..+++..
T Consensus 278 ~~n~~qs~p~~ 288 (894)
T KOG0132|consen 278 FMNVPQSIPSG 288 (894)
T ss_pred cccccccCCCC
Confidence 55555555443
No 212
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.32 E-value=2.1e+03 Score=28.62 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=62.0
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhh---chhHHHHHHHHHHHHHHccchHHHHHH
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAA---EEIVERDAVHKALMSLLRQDVKASLTA 143 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqs---dd~~E~~~v~~aL~sllk~D~k~tL~~ 143 (553)
+--++-++-.....-+.||-.|+|-|..+.-..|.-+++ =||..++.+- -..++++++=.=+-.++=.+ ..+.-.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~-~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~q 892 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR-PDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQ 892 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC-HHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHH
Confidence 344455566667777899999999999998888876544 4666666544 33466666654333333333 345556
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 144 LFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 144 lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
.|.+|.. +--...=.||.|+|+-+++
T Consensus 893 yY~~i~e-rIlDtgvsVRKRvIKIlrd 918 (1692)
T KOG1020|consen 893 YYDQIIE-RILDTGVSVRKRVIKILRD 918 (1692)
T ss_pred HHHHHHh-hcCCCchhHHHHHHHHHHH
Confidence 6676652 2222223578888776665
Done!