Query 008797
Match_columns 553
No_of_seqs 93 out of 105
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u0r_A Apoptosis inhibitor 5; 100.0 2E-143 8E-148 1145.5 43.0 445 8-503 4-466 (507)
2 2vgl_B AP-2 complex subunit be 98.2 0.00044 1.5E-08 75.3 26.0 134 31-170 48-186 (591)
3 1w63_A Adapter-related protein 97.9 0.00052 1.8E-08 75.4 20.2 133 34-170 72-205 (618)
4 4fdd_A Transportin-1; heat rep 97.8 0.0021 7.2E-08 72.1 24.3 136 30-170 126-282 (852)
5 4fdd_A Transportin-1; heat rep 97.8 0.00035 1.2E-08 78.4 17.7 284 37-336 95-412 (852)
6 2vgl_A Adaptor protein complex 97.8 0.002 6.7E-08 71.2 22.2 287 43-364 123-437 (621)
7 4hxt_A De novo protein OR329; 97.7 0.0065 2.2E-07 56.4 21.2 131 35-170 5-154 (252)
8 2jdq_A Importin alpha-1 subuni 97.7 0.0036 1.2E-07 63.5 20.7 300 32-365 64-395 (450)
9 1qgr_A Protein (importin beta 97.6 0.0053 1.8E-07 67.8 22.6 128 37-170 95-243 (876)
10 2bpt_A Importin beta-1 subunit 97.6 0.034 1.2E-06 61.2 28.9 130 36-170 99-250 (861)
11 1ibr_B P95, importin beta-1 su 97.6 0.007 2.4E-07 61.3 21.5 128 37-170 95-243 (462)
12 1b3u_A Protein (protein phosph 97.6 0.0024 8.3E-08 66.9 17.8 131 34-169 12-151 (588)
13 1wa5_B Importin alpha subunit; 97.5 0.0023 7.8E-08 67.8 17.5 132 33-169 131-282 (530)
14 4b8j_A Importin subunit alpha- 97.5 0.0011 3.8E-08 69.9 15.0 297 34-365 119-448 (528)
15 2jdq_A Importin alpha-1 subuni 97.5 0.014 4.6E-07 59.2 22.3 133 34-170 22-176 (450)
16 2bpt_A Importin beta-1 subunit 97.5 0.0085 2.9E-07 66.0 21.9 297 44-364 194-533 (861)
17 1b3u_A Protein (protein phosph 97.5 0.0042 1.4E-07 65.0 18.5 130 36-170 285-428 (588)
18 4db6_A Armadillo repeat protei 97.5 0.0046 1.6E-07 56.6 16.5 136 30-170 10-164 (210)
19 1ibr_B P95, importin beta-1 su 97.5 0.0065 2.2E-07 61.5 19.1 288 43-361 49-396 (462)
20 2vgl_B AP-2 complex subunit be 97.4 0.015 5.1E-07 63.3 22.7 120 43-169 98-227 (591)
21 4db8_A Armadillo-repeat protei 97.4 0.0072 2.5E-07 56.8 17.8 137 28-169 8-163 (252)
22 4b8j_A Importin subunit alpha- 97.4 0.01 3.4E-07 62.6 20.8 301 30-369 72-410 (528)
23 1wa5_B Importin alpha subunit; 97.4 0.012 4.2E-07 62.1 21.5 134 31-169 86-240 (530)
24 4hxt_A De novo protein OR329; 97.4 0.0045 1.5E-07 57.5 16.0 133 33-170 45-196 (252)
25 4db6_A Armadillo repeat protei 97.4 0.0015 5E-08 60.0 11.6 132 33-169 55-205 (210)
26 2qk2_A LP04448P; mini spindles 97.3 0.021 7E-07 54.3 19.9 128 43-175 27-164 (242)
27 1qgr_A Protein (importin beta 97.3 0.019 6.6E-07 63.3 21.4 296 44-358 187-539 (876)
28 1xqr_A HSPBP1 protein; armadil 97.0 0.0074 2.5E-07 61.0 13.4 132 34-170 83-235 (296)
29 1oyz_A Hypothetical protein YI 96.9 0.015 5E-07 56.0 14.5 114 43-168 103-216 (280)
30 1u6g_C TIP120 protein, CAND1; 96.9 0.073 2.5E-06 62.2 22.4 275 43-334 345-660 (1230)
31 4db8_A Armadillo-repeat protei 96.9 0.0038 1.3E-07 58.7 9.4 132 33-169 97-247 (252)
32 3ltj_A Alpharep-4; protein eng 96.8 0.02 6.8E-07 52.3 13.9 121 29-169 11-132 (201)
33 3ltm_A Alpha-REP4; protein eng 96.8 0.011 3.6E-07 54.6 12.1 119 31-169 49-168 (211)
34 3ltj_A Alpharep-4; protein eng 96.8 0.011 3.8E-07 54.0 11.9 146 31-196 44-195 (201)
35 1oyz_A Hypothetical protein YI 96.8 0.2 6.7E-06 48.1 21.2 123 35-169 26-153 (280)
36 3ltm_A Alpha-REP4; protein eng 96.8 0.011 3.9E-07 54.4 11.7 121 29-169 16-137 (211)
37 3gs3_A Symplekin, LD45768P; he 96.6 0.014 4.6E-07 58.5 11.5 80 63-150 48-127 (257)
38 3o2t_A Symplekin; heat repeat, 96.5 0.0053 1.8E-07 64.9 8.3 75 61-135 56-130 (386)
39 1w63_A Adapter-related protein 96.3 0.11 3.7E-06 57.0 18.0 114 50-169 296-410 (618)
40 2z6g_A B-catenin; FULL-length, 96.3 0.09 3.1E-06 59.3 17.7 127 36-169 119-259 (780)
41 1u6g_C TIP120 protein, CAND1; 96.3 0.058 2E-06 63.0 16.4 136 33-172 7-162 (1230)
42 1te4_A Conserved protein MTH18 96.1 0.027 9.1E-07 48.8 9.5 113 35-168 15-128 (131)
43 3ul1_B Importin subunit alpha- 96.1 0.75 2.6E-05 48.8 22.3 118 44-166 114-254 (510)
44 3ul1_B Importin subunit alpha- 95.9 2.2 7.6E-05 45.2 26.0 117 33-149 58-195 (510)
45 3tpo_A Importin subunit alpha- 95.7 1.5 5.3E-05 46.5 22.7 118 32-149 76-214 (529)
46 1te4_A Conserved protein MTH18 95.6 0.02 6.8E-07 49.7 6.2 85 34-130 44-129 (131)
47 2z6h_A Catenin beta-1, beta-ca 95.3 3.3 0.00011 44.9 24.3 132 32-168 56-207 (644)
48 2vgl_A Adaptor protein complex 95.3 1.1 3.9E-05 49.2 20.7 130 34-170 76-213 (621)
49 3gs3_A Symplekin, LD45768P; he 95.2 0.046 1.6E-06 54.6 8.2 139 7-169 29-169 (257)
50 1xqr_A HSPBP1 protein; armadil 95.2 0.04 1.4E-06 55.6 7.9 121 43-169 52-192 (296)
51 1jdh_A Beta-catenin; beta-cate 95.1 3.5 0.00012 42.5 25.4 129 34-168 19-167 (529)
52 2qk2_A LP04448P; mini spindles 95.1 0.16 5.6E-06 48.1 11.4 98 36-135 102-206 (242)
53 1jdh_A Beta-catenin; beta-cate 95.0 1 3.5E-05 46.5 18.2 103 62-169 11-126 (529)
54 3tpo_A Importin subunit alpha- 95.0 1.7 5.8E-05 46.2 20.1 119 46-169 224-360 (529)
55 2z6h_A Catenin beta-1, beta-ca 94.8 1 3.5E-05 48.9 18.4 103 62-169 8-123 (644)
56 2z6g_A B-catenin; FULL-length, 94.5 2.5 8.6E-05 47.6 21.1 130 34-169 152-301 (780)
57 3l9t_A Putative uncharacterize 94.3 0.11 3.7E-06 51.6 8.3 104 43-149 116-222 (240)
58 2qk1_A Protein STU2; STU2P, XM 93.9 0.46 1.6E-05 46.2 11.7 107 31-137 55-178 (249)
59 2qk1_A Protein STU2; STU2P, XM 93.6 0.77 2.6E-05 44.6 12.8 137 32-175 19-177 (249)
60 2x1g_F Cadmus; transport prote 93.3 3.5 0.00012 46.8 19.4 89 44-135 519-616 (971)
61 1wa5_C Importin alpha RE-expor 93.2 2.7 9.3E-05 48.0 18.4 147 44-196 471-648 (960)
62 2x19_B Importin-13; nuclear tr 93.1 5.2 0.00018 45.1 20.4 125 9-136 464-601 (963)
63 3ibv_A Exportin-T; karyopherin 91.7 5.7 0.00019 46.3 18.8 282 14-306 619-956 (980)
64 3m1i_C Exportin-1; heat repeat 91.7 5.1 0.00018 46.3 18.3 92 57-148 529-633 (1049)
65 3o2t_A Symplekin; heat repeat, 90.8 1.7 5.7E-05 45.9 12.0 139 7-169 39-179 (386)
66 3fga_B Serine/threonine-protei 89.6 19 0.00065 38.2 18.8 85 257-355 232-317 (403)
67 1xm9_A Plakophilin 1; armadill 89.5 0.79 2.7E-05 48.1 8.2 106 43-148 14-136 (457)
68 2npp_B PP2A, B subunit, serine 88.9 18 0.00061 38.9 18.2 189 101-355 157-350 (449)
69 3opb_A SWI5-dependent HO expre 88.8 1.4 4.6E-05 50.5 10.0 96 68-170 606-725 (778)
70 3tjz_B Coatomer subunit gamma; 88.6 1.6 5.6E-05 45.3 9.7 101 43-147 80-180 (355)
71 2jak_A Serine/threonine-protei 88.3 13 0.00044 39.3 16.4 189 101-355 169-362 (392)
72 3ibv_A Exportin-T; karyopherin 88.0 46 0.0016 38.7 23.4 64 42-105 506-574 (980)
73 1wa5_C Importin alpha RE-expor 87.9 27 0.00094 39.7 20.2 63 37-99 90-154 (960)
74 1lsh_A Lipovitellin (LV-1N, LV 87.4 28 0.00096 40.8 20.2 137 8-148 325-480 (1056)
75 3now_A UNC-45 protein, SD10334 87.1 16 0.00056 41.9 17.5 131 34-169 538-690 (810)
76 2x1g_F Cadmus; transport prote 82.0 16 0.00056 41.3 14.6 24 251-274 797-820 (971)
77 3jxy_A Alkylpurine DNA glycosy 81.3 2.5 8.5E-05 40.8 6.6 98 45-147 111-208 (232)
78 2b6c_A Hypothetical protein EF 81.1 5.1 0.00017 38.3 8.6 87 53-144 112-198 (220)
79 2x19_B Importin-13; nuclear tr 79.9 83 0.0028 35.3 23.2 66 67-135 489-557 (963)
80 3b2a_A TON_1937, putative unch 79.7 17 0.00058 36.4 11.8 153 11-170 51-215 (265)
81 3nmw_A APC variant protein; AR 79.4 1.7 5.9E-05 44.6 5.0 69 69-137 264-337 (354)
82 3u0r_A Apoptosis inhibitor 5; 78.0 73 0.0025 34.7 17.1 103 67-170 28-130 (507)
83 3tt9_A Plakophilin-2; cell adh 77.2 7.3 0.00025 37.9 8.5 97 35-131 11-121 (233)
84 1lsh_A Lipovitellin (LV-1N, LV 74.5 53 0.0018 38.5 16.2 222 104-368 288-515 (1056)
85 3nmz_A APC variant protein; pr 74.2 2.6 9E-05 45.0 4.8 69 69-137 380-453 (458)
86 3grl_A General vesicular trans 74.1 1.2E+02 0.0041 34.1 21.7 72 106-190 123-204 (651)
87 3l6x_A Catenin delta-1; cateni 73.7 9 0.00031 42.3 8.9 105 30-134 46-163 (584)
88 1xm9_A Plakophilin 1; armadill 72.3 9.4 0.00032 39.8 8.4 96 70-169 4-112 (457)
89 3now_A UNC-45 protein, SD10334 71.9 3.6 0.00012 47.2 5.4 94 43-137 635-740 (810)
90 4ffb_C Protein STU2; tubulin f 71.6 19 0.00066 34.6 9.9 131 43-175 67-214 (278)
91 3nmw_A APC variant protein; AR 71.2 11 0.00038 38.6 8.4 67 68-134 73-156 (354)
92 3nmz_A APC variant protein; pr 69.9 11 0.00038 40.1 8.4 66 69-134 190-272 (458)
93 3tjz_B Coatomer subunit gamma; 68.9 19 0.00064 37.4 9.6 114 60-179 59-173 (355)
94 3gjx_A Exportin-1; transport, 68.0 2E+02 0.0067 34.1 19.8 81 251-337 219-304 (1073)
95 1lrv_A LRV, leucine-rich repea 67.6 2 6.9E-05 42.2 1.9 56 53-128 42-97 (244)
96 3tt9_A Plakophilin-2; cell adh 66.8 16 0.00053 35.6 8.0 67 70-136 10-83 (233)
97 2db0_A 253AA long hypothetical 64.7 1.1E+02 0.0037 29.9 14.5 90 67-161 31-124 (253)
98 1hu3_A EIF4GII; heat repeat, t 64.7 36 0.0012 33.3 10.3 151 188-361 9-196 (260)
99 4ffb_C Protein STU2; tubulin f 63.6 1E+02 0.0036 29.3 13.6 59 257-315 157-216 (278)
100 4ady_A RPN2, 26S proteasome re 62.3 7.7 0.00026 45.4 5.6 96 66-168 575-671 (963)
101 2db0_A 253AA long hypothetical 62.1 50 0.0017 32.3 10.3 96 43-138 119-214 (253)
102 4hat_C Exportin-1; heat repeat 61.5 2.4E+02 0.0084 32.9 20.4 74 251-329 207-284 (1023)
103 3l6x_A Catenin delta-1; cateni 61.5 13 0.00044 41.1 7.0 97 65-165 45-155 (584)
104 3grl_A General vesicular trans 60.7 13 0.00044 41.8 6.8 116 49-170 108-238 (651)
105 3l9t_A Putative uncharacterize 60.5 35 0.0012 33.7 9.2 92 66-170 69-165 (240)
106 4ady_A RPN2, 26S proteasome re 59.2 7.6 0.00026 45.5 4.9 101 30-137 575-679 (963)
107 3m1i_C Exportin-1; heat repeat 57.6 2.6E+02 0.009 32.0 20.8 39 318-361 445-483 (1049)
108 3b2a_A TON_1937, putative unch 55.9 87 0.003 31.4 11.1 104 30-135 109-219 (265)
109 3dad_A FH1/FH2 domain-containi 55.4 1.8E+02 0.006 30.2 13.8 96 33-135 119-229 (339)
110 3s4w_B Protein FACD2, fanconi 49.9 50 0.0017 40.0 9.8 52 66-119 155-206 (1323)
111 3opb_A SWI5-dependent HO expre 49.7 3.4E+02 0.012 31.0 17.2 139 47-217 94-237 (778)
112 1wj7_A Hypothetical protein (R 48.5 20 0.00069 31.2 4.6 34 443-483 58-92 (104)
113 1t06_A Hypothetical protein; s 41.9 83 0.0028 30.2 8.5 83 54-140 98-186 (235)
114 3hjl_A Flagellar motor switch 39.4 39 0.0013 34.7 5.9 132 16-149 63-223 (329)
115 3qml_C Protein SLS1, nucleotid 36.4 3.7E+02 0.013 27.5 12.6 173 80-266 82-298 (315)
116 2yu0_A Interferon-activable pr 35.8 86 0.0029 26.7 6.5 23 198-221 11-33 (94)
117 1lrv_A LRV, leucine-rich repea 34.7 12 0.0004 36.7 1.1 84 40-165 154-238 (244)
118 3a6p_A Exportin-5; exportin-5, 34.5 1.4E+02 0.0047 35.4 10.3 100 34-133 531-656 (1204)
119 3oc3_A Helicase MOT1, MOT1; re 34.1 47 0.0016 37.4 5.7 90 42-135 273-362 (800)
120 3u5c_h Suppressor protein STM1 33.2 9 0.00031 38.6 0.0 12 530-541 237-248 (273)
121 2of3_A ZYG-9; multifunctional 32.1 32 0.0011 34.3 3.8 29 108-136 210-238 (266)
122 1ho8_A Vacuolar ATP synthase s 32.0 35 0.0012 37.0 4.3 53 43-95 417-474 (480)
123 4fu3_A Regulation of nuclear P 31.9 27 0.00092 30.4 2.9 50 66-120 5-54 (135)
124 3lay_A Zinc resistance-associa 30.5 14 0.00049 34.8 0.9 14 421-434 103-116 (175)
125 3gjx_A Exportin-1; transport, 29.8 7.5E+02 0.026 29.1 15.7 76 5-81 607-685 (1073)
126 2vso_E Eukaryotic initiation f 29.7 1.7E+02 0.0058 28.8 8.7 72 190-268 36-108 (284)
127 4gmo_A Putative uncharacterize 29.5 76 0.0026 35.0 6.7 67 65-132 31-103 (684)
128 2knz_A Ubiquilin-4; cytoplasm, 29.3 23 0.00079 26.7 1.7 22 444-465 31-53 (53)
129 2dbg_A MNDA, myeloid cell nucl 26.8 47 0.0016 28.8 3.4 23 198-221 18-40 (103)
130 2ozb_B U4/U6 small nuclear rib 23.9 2.7E+02 0.0092 27.6 8.8 39 29-67 12-54 (260)
131 2pk2_A Cyclin-T1, protein TAT; 23.4 17 0.00059 37.5 0.0 31 522-552 277-307 (358)
132 3d9j_A RNA-binding protein 16; 22.9 2.2E+02 0.0074 25.4 7.3 51 69-119 6-56 (145)
133 3fx7_A Putative uncharacterize 22.8 1.1E+02 0.0036 26.2 4.8 33 386-418 49-81 (94)
134 2of3_A ZYG-9; multifunctional 22.7 4.1E+02 0.014 26.2 9.9 94 70-170 134-233 (266)
135 4hat_C Exportin-1; heat repeat 22.2 73 0.0025 37.3 4.9 82 56-137 528-621 (1023)
136 1sz9_A PCF11 protein; RNA poly 21.6 1.9E+02 0.0065 25.8 6.6 82 85-170 23-111 (144)
137 1d9c_A Interferon-gamma; helic 21.4 46 0.0016 29.7 2.3 55 9-65 6-60 (121)
138 4flb_A Regulation of nuclear P 21.0 1.3E+02 0.0043 26.1 5.2 49 67-120 7-55 (132)
139 3clj_A Protein NRD1; CTD-inter 20.5 2.6E+02 0.009 25.7 7.4 106 68-181 8-139 (157)
140 4hrt_A Globin-2 A chain; oxyge 20.2 4.3E+02 0.015 23.0 10.5 68 34-119 19-88 (150)
141 2rig_A Interferon-gamma; cytok 20.2 57 0.002 29.9 2.8 55 9-65 6-60 (144)
142 1h2v_Z 20 kDa nuclear CAP bind 20.0 35 0.0012 29.9 1.4 71 445-549 84-154 (156)
No 1
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=100.00 E-value=2.4e-143 Score=1145.53 Aligned_cols=445 Identities=36% Similarity=0.594 Sum_probs=407.7
Q ss_pred hHHHHHHHHHhhhhhhcccc-ccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHH
Q 008797 8 AKQIEKLYEFGERLNEAKDK-SQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRV 86 (553)
Q Consensus 8 ~~~ie~LY~~~~~L~~akdk-~~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~ 86 (553)
.++||+||++||||+||+|+ ++|+++|++||+|+||++++|+|||||||||||+||+|+++|||||+|||||+|++||+
T Consensus 4 ~~~ie~LY~~~~~L~da~dk~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~ 83 (507)
T 3u0r_A 4 MPTVEELYRNYGILADATEQVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRR 83 (507)
T ss_dssp -CCHHHHHHHHHHHHHTGGGGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred cchHHHHHHHhhHhhhccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHH
Confidence 34699999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 008797 87 QAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLS 166 (553)
Q Consensus 87 ~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lk 166 (553)
||||+||.|||+ +|++||||||+||||+||++|+++|+|||++||++||++||++||+||. .+||.+|||+|+
T Consensus 84 qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~-----~~~e~~Rer~lk 156 (507)
T 3u0r_A 84 QAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQIL-----QGEDIVRERAIK 156 (507)
T ss_dssp HHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-----HSCHHHHHHHHH
T ss_pred HHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHHHc-----ccchHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999 678999999999
Q ss_pred HHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccc
Q 008797 167 FIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDA 246 (553)
Q Consensus 167 Fl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~ 246 (553)
||++||++++.+++ ++|+|++|+++|+| +|+|||++||++||++|++|++|+ ++.|| |+||+++.+||+|+.
T Consensus 157 Fi~~kl~~l~~~~l--~~E~E~~i~~~ikK---~L~DVT~~EF~L~m~lL~~lkl~~--t~~g~-qeLv~ii~eQa~L~~ 228 (507)
T 3u0r_A 157 FLSTKLKTLPDEVL--TKEVEELILTESKK---VLEDVTGEEFVLFMKILSGLKSLQ--TVSGR-QQLVELVAEQADLEQ 228 (507)
T ss_dssp HHHHHGGGSCTTTS--CHHHHHHHHHHHHH---HTTSCCHHHHHHHHHHHHTSGGGS--SHHHH-HHHHHHHHHHHTTTS
T ss_pred HHHHHHhhcchhhc--cHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHhccccc--CchHH-HHHHHHHHHHHhccC
Confidence 99999999999999 69999999999999 999999999999999999999998 46677 999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChh-----hhhhHHHHHHHhCCCCC-chhhhh
Q 008797 247 QFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEE-----RKLDLLKALAEISPYTT-PQDSRQ 320 (553)
Q Consensus 247 ~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~-----~kl~lLK~lAe~s~~~~-~~~a~~ 320 (553)
+|+++|+|+|||+|+|+++|+||||++++|++||+|||++|||+|++|++. .|+++||+||||||||+ .+++++
T Consensus 229 ~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~ 308 (507)
T 3u0r_A 229 TFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLET 308 (507)
T ss_dssp CCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHH
Confidence 999999999999999999999999999999999999999999999999763 89999999999999999 677999
Q ss_pred hhHHHHHHHHHhcCCCCC----------CCCccchHHHHHHHHHHHHhhhcCchhhhhccCcccccCCCCCcCCcChhhh
Q 008797 321 ILPSVAVLLKKYMPLRKT----------GGEEMNFTYVECLLYTFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSDC 390 (553)
Q Consensus 321 ~l~~i~~~L~~~mP~~~~----------~~~~l~fs~vEcLL~afh~L~~k~P~~~~~~cg~k~~Tgqpsd~lgeD~~~~ 390 (553)
+|++||++|++|||.||+ ++|+|||||||||||+||+||+|+|+|+.+ +|++++
T Consensus 309 ~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e----------------~~~~~~ 372 (507)
T 3u0r_A 309 NLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA----------------KLNAEK 372 (507)
T ss_dssp HHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC----------------C--CCT
T ss_pred HHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc----------------cccHHH
Confidence 999999999999999996 458999999999999999999999999843 256899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCChHHHHHHHhhhccchhhhhhhccHHHHhhhhhcCCCCccCCC
Q 008797 391 YKDFTERLTTVEDLTRATMKKLTQGLADHNKEMAAAKTDEAKEKIKTQKQNTTTGLRTCNNILAMSKPLHSKTPSFIGDK 470 (553)
Q Consensus 391 ~kdFr~RLqyl~~~~q~yikkl~~~l~~~~K~~~~~k~ee~k~k~~~~~q~~~~aL~~~~NI~~li~~L~~~pPsf~~~~ 470 (553)
|||||.|||||+|++|+|||+|+++|++ |+++++|+||||+|+ +|||||+||++||++|||+||+|++
T Consensus 373 lkdfr~RLqy~ar~~q~yikkL~~~~~~--K~~~~~kteenk~kv--------~alkt~~NI~~likdlfh~pPsFk~-- 440 (507)
T 3u0r_A 373 LKDFKIRLQYFARGLQVYIRQLRLALQG--KTGEALKTEENKIKV--------VALKITNNINVLIKDLFHIPPSYKS-- 440 (507)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTT--CCTTGGGSHHHHHHH--------HHHHHHHHHHHHHHHCC--CCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhhcchHHHHHH--------HHHHHHhhHHHHHHHHhcCCCCcee--
Confidence 9999999999999999999999999987 999999999999998 7999999999999999999999998
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCC-cCCCCC
Q 008797 471 SVNLSWKEATKPSVPSTTTASGGKRPA-SINGSG 503 (553)
Q Consensus 471 ~i~lSW~~~~k~~~~~~~~~~~gkr~~-~~~g~~ 503 (553)
+||+||++++| ..+|||++ ..+|++
T Consensus 441 ~v~lSWk~~~~--------~~~~kr~~~~~~~~~ 466 (507)
T 3u0r_A 441 TVTLSWKPVQK--------VEIGQKRASEDTTSG 466 (507)
T ss_dssp CCCCTTSCC-------------------------
T ss_pred eeeeeeecccc--------cccCCCCCCccCCCC
Confidence 99999998764 34688887 455544
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.18 E-value=0.00044 Score=75.33 Aligned_cols=134 Identities=13% Similarity=0.203 Sum_probs=110.4
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008797 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (553)
Q Consensus 31 ~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDV 109 (553)
...|-.++.... .+...|+++...+..|++.-|++.--++|++...+.|+++.||..|++.|..++ +++.+.-+...
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~ 125 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEP 125 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHH
Confidence 445777777776 678999999999999999999999999999999999999999999999999997 67888889999
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHccchHHH----HHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKAS----LTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~D~k~t----L~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
|.++|.+.++..+..+=.+|..+++.+|... +-..+.++.. +.+..||.-++.-|..
T Consensus 126 l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~----d~d~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 126 LRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA----DSNPMVVANAVAALSE 186 (591)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTS----CSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhC----CCChhHHHHHHHHHHH
Confidence 9999999999999999999999998876532 2233344442 3455788888777665
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.91 E-value=0.00052 Score=75.43 Aligned_cols=133 Identities=8% Similarity=0.032 Sum_probs=103.1
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH
Q 008797 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (553)
Q Consensus 34 y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~Q 112 (553)
|-.++.... .+-..|+|.--.+..|++.=|++.--++|++..-+.|.++.||-.|++.|..++ +++.+.-+...+.+
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~ 149 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEK 149 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 334444333 567899999999999999999999999999998889999999999999999998 46888888999999
Q ss_pred HHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 113 LLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
+|.+.++..+..+-.+|..+++.+|. .+..++..+..- -.+.+..|+.-++..|..
T Consensus 150 ~L~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~~l-L~D~d~~V~~~Al~~L~~ 205 (618)
T 1w63_A 150 LLKTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPATKNL-LNEKNHGVLHTSVVLLTE 205 (618)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTTTS-TTCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHHHH-hCCCCHhHHHHHHHHHHH
Confidence 99999999999999999999998885 233444333311 012334567766665553
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.85 E-value=0.0021 Score=72.14 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=106.6
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc---------chHHHHHhhhhhcccchhHHHHHhhccccccccC
Q 008797 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL---------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT 99 (553)
Q Consensus 30 ~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L---------~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~ 99 (553)
-.+....++.... ++...+..|...+.+.++.+|+. -+..+..++.+..|++..||..|++.|-.++...
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~ 205 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR 205 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 4455666777666 67889999999999999999876 3457778888999999999999999999998765
Q ss_pred cc----hhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchH-------HHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008797 100 PE----YLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 100 ~e----~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k-------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl 168 (553)
++ ++..+...|.++++++++..+..+-.+|..+.+..|+ ..+..++..+. +.++.+|..++.|+
T Consensus 206 ~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-----~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 206 TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-----DQDENVALEACEFW 280 (852)
T ss_dssp CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-----CSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-----CCcHHHHHHHHHHH
Confidence 53 3456777888888889999999999999999987664 23444444443 45678999999998
Q ss_pred Hh
Q 008797 169 RD 170 (553)
Q Consensus 169 ~~ 170 (553)
..
T Consensus 281 ~~ 282 (852)
T 4fdd_A 281 LT 282 (852)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.84 E-value=0.00035 Score=78.40 Aligned_cols=284 Identities=14% Similarity=0.117 Sum_probs=160.8
Q ss_pred HHHHhc-CCHHHHHHHhhhhhHHhcc-CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch---------hhh
Q 008797 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY---------LSK 105 (553)
Q Consensus 37 Il~~~k-gs~k~K~LAaqfI~kffk~-FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~---------~~r 105 (553)
++.+.. .++..+.-+|+.|...+++ ||+--.+.+..++.++.+.+..+|..|+..|-.+|++.++. +..
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~ 174 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNI 174 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHH
Confidence 344444 6678999999999998876 67777788999999999999999999999999999988776 344
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHccchH-------HHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchhh
Q 008797 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK-------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAE 178 (553)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k-------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e 178 (553)
+...|.++|+++++..+..+-++|..+++..+. ..+..++..+. ++++.+|..++.-|..=+...+ +
T Consensus 175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~-----d~~~~vr~~a~~~L~~l~~~~~-~ 248 (852)
T 4fdd_A 175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG-----DEEPEVRKNVCRALVMLLEVRM-D 248 (852)
T ss_dssp HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT-----CCCHHHHHHHHHHHHHHHHHCH-H
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHhCH-H
Confidence 667778888888888888888999887766543 45666766554 5667888877776553222222 2
Q ss_pred hcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccc---cCC-CCchhHHHHHHHHHHHhhhc--------cc
Q 008797 179 LLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSL---FGE-KAPTERMKELIGIIEGQADL--------DA 246 (553)
Q Consensus 179 ~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~---~~~-~s~~gr~qeLv~~i~eqa~L--------d~ 246 (553)
.+.+ -++. ++..+-+ ++.|...+=-..-++++..+-- ... ..| ....|+..+...... .+
T Consensus 249 ~~~~--~l~~-l~~~l~~---~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~--~~~~l~p~ll~~l~~~e~d~~~~~~ 320 (852)
T 4fdd_A 249 RLLP--HMHN-IVEYMLQ---RTQDQDENVALEACEFWLTLAEQPICKDVLVR--HLPKLIPVLVNGMKYSDIDIILLKG 320 (852)
T ss_dssp HHGG--GHHH-HHHHHHH---HHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTT--THHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred HHHH--HHHH-HHHHHHH---HccCCcHHHHHHHHHHHHHHhcchhHHHHHHH--HHHHHHHHHHHHcCCcHhHHHHhcC
Confidence 2211 1222 3444444 5555432111122333332211 000 001 124566555443200 01
Q ss_pred cC--CCCChHH--HHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhh
Q 008797 247 QF--NVSDADH--IDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQIL 322 (553)
Q Consensus 247 ~f--~~sd~d~--idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l 322 (553)
+. +..|.|. --.+..+.-.++..++...+ ...+..+...+...+.+-....|...+..|..++..|+. .....+
T Consensus 321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l 398 (852)
T 4fdd_A 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYL 398 (852)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGH
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHH
Confidence 10 1111000 00111122222222222111 122232333333333332335677888899999988864 333577
Q ss_pred HHHHHHHHHhcCCC
Q 008797 323 PSVAVLLKKYMPLR 336 (553)
Q Consensus 323 ~~i~~~L~~~mP~~ 336 (553)
+.+...|...+-++
T Consensus 399 ~~~l~~l~~~l~d~ 412 (852)
T 4fdd_A 399 PELIPHLIQCLSDK 412 (852)
T ss_dssp HHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCC
Confidence 88888888888654
No 6
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.78 E-value=0.002 Score=71.25 Aligned_cols=287 Identities=11% Similarity=0.143 Sum_probs=161.2
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhh--cccchhHHHHHhhccccccccCcchhh--hHHHHHHHHHhhch
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLI--EEEELGVRVQAIRGLPLFCKDTPEYLS--KIVDILVQLLAAEE 118 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLc--EDed~~IR~~aik~Lp~lck~~~e~~~--riaDVL~QLLqsdd 118 (553)
+++-..-||-.++...- =|++.+.-+..+..++ .|.++-||+.|+=.+..+++-+|+.++ ...+.|.++|.+.+
T Consensus 123 ~n~~ir~lALr~L~~i~--~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d 200 (621)
T 2vgl_A 123 RNPTFMGLALHCIANVG--SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQH 200 (621)
T ss_dssp CCHHHHHHHHHHHHHHC--CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSC
T ss_pred CCHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCC
Confidence 44555556666666653 3666666677777777 899999999999999999999999988 89999999998888
Q ss_pred hHHHHHHHHHHHHHHccchHH---H---HHHHHHhhccC-CCC-CC-------hHHHHHHHHHHHHhhcccchhhhcCCh
Q 008797 119 IVERDAVHKALMSLLRQDVKA---S---LTALFKHIGSV-DEP-ST-------DEFIREKVLSFIRDKVFPLKAELLKPQ 183 (553)
Q Consensus 119 ~~E~~~v~~aL~sllk~D~k~---t---L~~lf~qI~~~-~e~-~~-------eE~vREr~lkFl~~kl~~l~~e~l~~~ 183 (553)
+..+..+-.+|.++...+|.. . +-.++.++... +-+ .+ ++-.+-++|++|..-. +. ..
T Consensus 201 ~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~-~~------~d 273 (621)
T 2vgl_A 201 LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP-PP------ED 273 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS-SC------SS
T ss_pred ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC-CC------CC
Confidence 888888888888888777753 1 22333344321 111 11 4678888888876422 11 12
Q ss_pred HHHHHHHHHHHHHHhhhccccc--------HHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHH
Q 008797 184 EEMERHITDLIKKVLQSLEDVT--------GAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADH 255 (553)
Q Consensus 184 eE~E~~i~~~ikK~~~vL~dVT--------~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~ 255 (553)
.++.+.+.+.+..+++.+.+.. ...-..+++..+.+-.+. .. .+++..+.+. |-..+..+|++.
T Consensus 274 ~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~-----~~~~~~~~~~--L~~~L~~~~~ni 345 (621)
T 2vgl_A 274 PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SE-----PNLLVRACNQ--LGQFLQHRETNL 345 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CC-----HHHHHHHHHH--HHHHSSCSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-Cc-----HHHHHHHHHH--HHHHhcCCCcch
Confidence 3455555555555333322211 001112222222222221 11 1222222221 112233344421
Q ss_pred HHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCC-CCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcC
Q 008797 256 IDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFD-KLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMP 334 (553)
Q Consensus 256 idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~-~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP 334 (553)
|++. +. ++-.+....++..++.-....|++.+. +=|...|...|.++..++ ++. .+..|...|++|+.
T Consensus 346 --ry~a-L~-~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~----Nv~~Iv~eL~~yl~ 414 (621)
T 2vgl_A 346 --RYLA-LE-SMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRS----NAQQIVAEMLSYLE 414 (621)
T ss_dssp --HHHH-HH-HHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHH----HHHHHHHHHHHHHH
T ss_pred --HHHH-HH-HHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---Chh----hHHHHHHHHHHHHH
Confidence 1111 01 111111111123444444556666665 555566777777777774 333 45667777788875
Q ss_pred CCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008797 335 LRKTGGEEMNFTYVECLLYTFHHLAHKAPN 364 (553)
Q Consensus 335 ~~~~~~~~l~fs~vEcLL~afh~L~~k~P~ 364 (553)
. .+..+.+-+.-+.+.+|.|+|.
T Consensus 415 ~-------~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 415 T-------ADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp H-------CCHHHHHHHHHHHHHHHHHHCS
T ss_pred h-------cCHHHHHHHHHHHHHHHHhcCC
Confidence 3 3456777778888888877654
No 7
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.70 E-value=0.0065 Score=56.38 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=103.7
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh---
Q 008797 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK--- 105 (553)
Q Consensus 35 ~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r--- 105 (553)
..++...+ +++..+.-|+..|.......|+... .++..++.+..+++..||..|+..|-.+|.+++++...
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 84 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 84 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34555555 6677888888888888887774433 47899999999999999999999999999988776543
Q ss_pred --HHHHHHHHHhhchhHHHHHHHHHHHHHHccchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 106 --IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 106 --iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
+.+.|+++|.++++..+..+-.+|..+...++. +.+..|+..+. ++++.+|+.++..|..
T Consensus 85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~-----~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-----STDSEVQKEAARALAN 154 (252)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 688999999999988888999999998866554 46777777665 5567788888877663
No 8
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.67 E-value=0.0036 Score=63.49 Aligned_cols=300 Identities=11% Similarity=0.053 Sum_probs=170.0
Q ss_pred hhHHHHHHHhc-C-CHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhh
Q 008797 32 KDYEGIIEAAK-T-SLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS 104 (553)
Q Consensus 32 ~~y~~Il~~~k-g-s~k~K~LAaqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ 104 (553)
.....++...+ + ++..+.-|+..+......-|+.. ..++..++.++.++++.||.+|+..|..+|.+++++..
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 34566666666 5 68899999999999887655433 45899999999999999999999999999998876543
Q ss_pred -----hHHHHHHHHHhh-chhHHHHHHHHHHHHHHccc-h-------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 105 -----KIVDILVQLLAA-EEIVERDAVHKALMSLLRQD-V-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 105 -----riaDVL~QLLqs-dd~~E~~~v~~aL~sllk~D-~-------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
.+...|+++|.+ .++..+..+-.+|..+...+ | .+.+..|+..+. ++++.+|+.+...|..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~-----~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF-----VSDTDVLADACWALSY 218 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT-----CCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHH
Confidence 367889999996 57788888888999888654 3 467777777775 5567788776665543
Q ss_pred hcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHH-----HHHHHHHhhhcc
Q 008797 171 KVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKE-----LIGIIEGQADLD 245 (553)
Q Consensus 171 kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qe-----Lv~~i~eqa~Ld 245 (553)
=....+ +.. ..-.+.-+ +..+++.|.+-+.+--......|..+-.. .+ ...+. ++..+..
T Consensus 219 l~~~~~-~~~--~~~~~~~~---i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~-~~~~~~~~~~~l~~L~~----- 283 (450)
T 2jdq_A 219 LSDGPN-DKI--QAVIDAGV---CRRLVELLMHNDYKVVSPALRAVGNIVTG---DD-IQTQVILNCSALQSLLH----- 283 (450)
T ss_dssp HTSSSH-HHH--HHHHHTTT---HHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CH-HHHHHHHTTTHHHHHHH-----
T ss_pred HHCCCc-HHH--HHHHHcCc---HHHHHHHHCCCchhHHHHHHHHHHHHhhC---Ch-HHHHHHHHCccHHHHHH-----
Confidence 111100 000 00011112 22223355544332222233333333221 11 11121 2222222
Q ss_pred ccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHH-HHHhhhccCCCCC----ChhhhhhHHHHHHHhCCCCCchhhhh
Q 008797 246 AQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLN-YLNKHIIPVFDKL----PEERKLDLLKALAEISPYTTPQDSRQ 320 (553)
Q Consensus 246 ~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~-y~~~~IlP~l~~l----~~~~kl~lLK~lAe~s~~~~~~~a~~ 320 (553)
.+...++......+.++.. ++.+. ..... ++...++|.|-.+ +.+.|...+.+|..++...++.....
T Consensus 284 -ll~~~~~~vr~~a~~~L~~----l~~~~--~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 356 (450)
T 2jdq_A 284 -LLSSPKESIKKEACWTISN----ITAGN--RAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 356 (450)
T ss_dssp -HTTCSSHHHHHHHHHHHHH----HTTSC--HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred -HHcCCCHHHHHHHHHHHHH----HHcCC--HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 1222334333333333332 33222 12222 2223555543332 23456666667766665444444444
Q ss_pred hhHH-HHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchh
Q 008797 321 ILPS-VAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNA 365 (553)
Q Consensus 321 ~l~~-i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~P~~ 365 (553)
++.. +...|...+..+ +....+..+.++.+|+...+.+
T Consensus 357 l~~~~~i~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~~~~~ 395 (450)
T 2jdq_A 357 LVELGCIKPLCDLLTVM-------DSKIVQVALNGLENILRLGEQE 395 (450)
T ss_dssp HHHHTCHHHHHHGGGSS-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHhchhh
Confidence 4432 555666666432 3456788888888888766653
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.62 E-value=0.0053 Score=67.80 Aligned_cols=128 Identities=12% Similarity=0.169 Sum_probs=91.8
Q ss_pred HHHHhc-CCHHHHHHHhhhhhHHhcc-CC-CcchHHHHHhhhhhccc--chhHHHHHhhccccccccC-----cchhhhH
Q 008797 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FP-DLSSRAVDAHLDLIEEE--ELGVRVQAIRGLPLFCKDT-----PEYLSKI 106 (553)
Q Consensus 37 Il~~~k-gs~k~K~LAaqfI~kffk~-FP-~L~e~Ai~a~lDLcEDe--d~~IR~~aik~Lp~lck~~-----~e~~~ri 106 (553)
++.+.. .++.. .-+++.|...+++ || +--.+.+..++.++.++ +..+|..|++.|..+|..- ..|++.+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 555554 45566 7788888877664 34 44556788899999999 9999999999999999863 3567788
Q ss_pred HHHHHHHHhhc--hhHHHHHHHHHHHHHHccch---------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 107 VDILVQLLAAE--EIVERDAVHKALMSLLRQDV---------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 107 aDVL~QLLqsd--d~~E~~~v~~aL~sllk~D~---------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
...|.++|..+ ++..+..+=++|..++..-. ...+..++..+. .+++.+|..++++|..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~vr~~a~~~l~~ 243 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-----CPDTRVRVAALQNLVK 243 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHH
Confidence 88899999887 46777888888887765311 123455554443 4567789888887765
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.62 E-value=0.034 Score=61.21 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=95.9
Q ss_pred HHHHHhc-CCHHHHHHHhhhhhHHhcc-CCC-cchHHHHHhhhhhccc-chhHHHHHhhccccccccC-------cchhh
Q 008797 36 GIIEAAK-TSLKAKQLAAQLIPRFFKF-FPD-LSSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDT-------PEYLS 104 (553)
Q Consensus 36 ~Il~~~k-gs~k~K~LAaqfI~kffk~-FP~-L~e~Ai~a~lDLcEDe-d~~IR~~aik~Lp~lck~~-------~e~~~ 104 (553)
.++.+.. .++....-+++.|...+++ ||. --.+.+..+++++.++ |+.+|..|++-|-.+|++- ..++.
T Consensus 99 ~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 178 (861)
T 2bpt_A 99 NALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN 178 (861)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Confidence 4555555 6688888899999998876 684 5578999999999999 9999999999999999853 24677
Q ss_pred hHHHHHHHHHhhc--hhHHHHHHHHHHHHHHcc---ch------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 105 KIVDILVQLLAAE--EIVERDAVHKALMSLLRQ---DV------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 105 riaDVL~QLLqsd--d~~E~~~v~~aL~sllk~---D~------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
.+...|.+.|.++ ++..+..+-++|..++.. +. ...+..++..+. +++..+|+.++.-|..
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~~~~~~r~~a~~~l~~ 250 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ-----AEDIEVQAAAFGCLCK 250 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT-----CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHH
Confidence 7888888888887 667788888888776432 11 124555554443 4567788877776654
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.60 E-value=0.007 Score=61.31 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=88.9
Q ss_pred HHHHhc-CCHHHHHHHhhhhhHHhcc-CCC-cchHHHHHhhhhhccc--chhHHHHHhhccccccccC-----cchhhhH
Q 008797 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FPD-LSSRAVDAHLDLIEEE--ELGVRVQAIRGLPLFCKDT-----PEYLSKI 106 (553)
Q Consensus 37 Il~~~k-gs~k~K~LAaqfI~kffk~-FP~-L~e~Ai~a~lDLcEDe--d~~IR~~aik~Lp~lck~~-----~e~~~ri 106 (553)
++.+.. .++.. .-+++.|...+++ ||+ .-.+.+..++.++.++ |..+|..|+..|-.+|++. ..|+..+
T Consensus 95 ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (462)
T 1ibr_B 95 VLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (462)
T ss_dssp HHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHH
T ss_pred HHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHH
Confidence 445444 44556 6678888888776 674 5567899999999998 9999999999999999865 3456778
Q ss_pred HHHHHHHHhhc--hhHHHHHHHHHHHHHHcc-----chH---H-HHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 107 VDILVQLLAAE--EIVERDAVHKALMSLLRQ-----DVK---A-SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 107 aDVL~QLLqsd--d~~E~~~v~~aL~sllk~-----D~k---~-tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
...|.++|+.+ ++..+..+-++|.+++.. +.. . .+..++..+. ++++.+|..++..|..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-----CPDTRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHH
Confidence 88889999887 567777777788775432 111 1 1333333222 4567788877766554
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.55 E-value=0.0024 Score=66.87 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=95.0
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc--chHHHHHhhhhhcccchhHHHHHhhcccccccc--CcchhhhHHH
Q 008797 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL--SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD--TPEYLSKIVD 108 (553)
Q Consensus 34 y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L--~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~--~~e~~~riaD 108 (553)
...++...+ ++......|++-+......++.- .++.+..+.+.+ |++..||..+.+.|..++.. .++|...+..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~ 90 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLP 90 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456666666 67788888888888877766432 234456666666 77889999999999999864 5678889999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHccchHHH----HHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 109 ILVQLLAAEEIVERDAVHKALMSLLRQDVKAS----LTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 109 VL~QLLqsdd~~E~~~v~~aL~sllk~D~k~t----L~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+|.+++.++++..+..+-.+|..+....|... +-.++..+.. +++..+|+-++..+.
T Consensus 91 ~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~----~~~~~~R~~a~~~l~ 151 (588)
T 1b3u_A 91 PLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAG----GDWFTSRTSACGLFS 151 (588)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHT----CSSHHHHHHHGGGHH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHH
Confidence 99999999999999999999999998766543 3334444432 334456776655444
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.54 E-value=0.0023 Score=67.79 Aligned_cols=132 Identities=18% Similarity=0.117 Sum_probs=100.0
Q ss_pred hHHHHHHHhc-C-CHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhh-
Q 008797 33 DYEGIIEAAK-T-SLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS- 104 (553)
Q Consensus 33 ~y~~Il~~~k-g-s~k~K~LAaqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~- 104 (553)
....++...+ + ++..+..|+..+......-|+.. ..++..++.+..+.+..||.+|+..|..+|.+++++..
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 3455555555 3 67888888888888887666544 34678889999999999999999999999998776533
Q ss_pred ----hHHHHHHHHHhhchhHHHHHHHHHHHHHHccc-h-------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 105 ----KIVDILVQLLAAEEIVERDAVHKALMSLLRQD-V-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 105 ----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D-~-------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
.+...|+++|.+.++..+..+-.+|..|...+ | .+.+..|+..+. ++++.+|..++..|.
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~ 282 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY-----SMDTETLVDACWAIS 282 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT-----CCCHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 36788999999988888888888999888664 3 356667776665 456778877776555
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.53 E-value=0.0011 Score=69.85 Aligned_cols=297 Identities=11% Similarity=0.056 Sum_probs=164.6
Q ss_pred HHHHHHHhc-CC-HHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-
Q 008797 34 YEGIIEAAK-TS-LKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (553)
Q Consensus 34 y~~Il~~~k-gs-~k~K~LAaqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r- 105 (553)
...++...+ ++ +..+.-|+..+......-|+... .++..++.|..+++..||.+|+..|..+|.+++++...
T Consensus 119 v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i 198 (528)
T 4b8j_A 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLV 198 (528)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 445555555 44 78888899888888876665444 38889999999999999999999999999988776444
Q ss_pred ----HHHHHHHHH-hhchhHHHHHHHHHHHHHHccch-------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcc
Q 008797 106 ----IVDILVQLL-AAEEIVERDAVHKALMSLLRQDV-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF 173 (553)
Q Consensus 106 ----iaDVL~QLL-qsdd~~E~~~v~~aL~sllk~D~-------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~ 173 (553)
+...|+++| .+.++..+..+-.+|..|....| .+.+..|...+. ++++.+++.++.-|..=.
T Consensus 199 ~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~aL~~l~- 272 (528)
T 4b8j_A 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH-----SNDEEVLTDACWALSYLS- 272 (528)
T ss_dssp HHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT-----CCCHHHHHHHHHHHHHHT-
T ss_pred HHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHH-
Confidence 456788888 56677788888888888887643 346666666665 556778887776555311
Q ss_pred cchhhhcCChHHHHHHHHH--HHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHH-----HHHHHHhhhccc
Q 008797 174 PLKAELLKPQEEMERHITD--LIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKEL-----IGIIEGQADLDA 246 (553)
Q Consensus 174 ~l~~e~l~~~eE~E~~i~~--~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeL-----v~~i~eqa~Ld~ 246 (553)
.-. .+....+++ .+..++..|.+-+..--......|..+-.. .+..+ +.+ +..+... |..
T Consensus 273 ~~~-------~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~-~~~~~~~~l~~L~~l--L~~ 339 (528)
T 4b8j_A 273 DGT-------NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG---DDAQT-QCIIDHQALPCLLSL--LTQ 339 (528)
T ss_dssp SSC-------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CHHHH-HHHHTTTHHHHHHHH--HHS
T ss_pred cCC-------HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC---CHHHH-HHHHHhhhHHHHHHH--HcC
Confidence 111 111111111 222333356554432222233344433322 11111 111 1111111 111
Q ss_pred cCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHH-hhhccCCCCC----ChhhhhhHHHHHHHhCCCCCchhhhhh
Q 008797 247 QFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLN-KHIIPVFDKL----PEERKLDLLKALAEISPYTTPQDSRQI 321 (553)
Q Consensus 247 ~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~-~~IlP~l~~l----~~~~kl~lLK~lAe~s~~~~~~~a~~~ 321 (553)
..+++....... ++--+..+ +...+.++. ..++|.|-.+ +.+.+...+.+|+-++...++.....+
T Consensus 340 ---~~~~~v~~~A~~----~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 410 (528)
T 4b8j_A 340 ---NLKKSIKKEACW----TISNITAG--NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYL 410 (528)
T ss_dssp ---CCCHHHHHHHHH----HHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ---CCcHHHHHHHHH----HHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 112322222222 22222222 222233333 3566654333 335676777777777655444444333
Q ss_pred hHH-HHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcCchh
Q 008797 322 LPS-VAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPNA 365 (553)
Q Consensus 322 l~~-i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~P~~ 365 (553)
+.. +...|...+-.+ +-..++..+.++++|.+..+..
T Consensus 411 ~~~~~i~~L~~lL~~~-------d~~v~~~al~~L~~l~~~~~~~ 448 (528)
T 4b8j_A 411 VSEGCIKPLCDLLICP-------DIRIVTVCLEGLENILKVGETD 448 (528)
T ss_dssp HHTTCHHHHHHGGGCS-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHHHHHh
Confidence 222 444455555331 2356788888888888776653
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.52 E-value=0.014 Score=59.24 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=101.5
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhc--cCCCcch-----HHHHHhhhhhccc-chhHHHHHhhccccccccCcchhh
Q 008797 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFK--FFPDLSS-----RAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEYLS 104 (553)
Q Consensus 34 y~~Il~~~k-gs~k~K~LAaqfI~kffk--~FP~L~e-----~Ai~a~lDLcEDe-d~~IR~~aik~Lp~lck~~~e~~~ 104 (553)
...++...+ +++..+..|++.+.+... .-|..+. .++..++.++.++ +..||..|...|-.+|..++++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 455666555 778899999999999765 3344332 6789999999988 899999999999999998777653
Q ss_pred -----hHHHHHHHHHhhchhHHHHHHHHHHHHHHccchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 105 -----KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 105 -----riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
.+...|+++|.++++..+..+-.+|..+...++. +.+..|...+.. +.+..+|+.++..|..
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK----QNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS----CCCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC----CCCHHHHHHHHHHHHH
Confidence 3778999999999998899999999888876642 445566555541 2456788888776654
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.49 E-value=0.0085 Score=65.98 Aligned_cols=297 Identities=6% Similarity=0.018 Sum_probs=155.0
Q ss_pred CHHHHHHHhhhhhHHhccCCCc------chHHHHHhhhhhcccchhHHHHHhhccccccccCcch----hh-hHHHHHHH
Q 008797 44 SLKAKQLAAQLIPRFFKFFPDL------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LS-KIVDILVQ 112 (553)
Q Consensus 44 s~k~K~LAaqfI~kffk~FP~L------~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~----~~-riaDVL~Q 112 (553)
++.++..|.+-+..+...|++- .+..+..+..++.+++..+|..|++.|..++...+++ +. .+..++..
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~ 273 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIA 273 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888988888865544421 1346788888999999999999999999999877765 44 56666777
Q ss_pred HHhhchhHHHHHHHHHHHHHHccch------------------------HHHHHHHHHhhccCCCCCChH--HHHHHHHH
Q 008797 113 LLAAEEIVERDAVHKALMSLLRQDV------------------------KASLTALFKHIGSVDEPSTDE--FIREKVLS 166 (553)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D~------------------------k~tL~~lf~qI~~~~e~~~eE--~vREr~lk 166 (553)
.+.++++..+..+-..|.++...-+ ...+..++..+...++..+|+ .+|..+..
T Consensus 274 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~ 353 (861)
T 2bpt_A 274 TMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHH
Confidence 7777777667777666666655421 234445555554332221122 57776666
Q ss_pred HHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCch---hHHHHHHHHHHHhhh
Q 008797 167 FIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPT---ERMKELIGIIEGQAD 243 (553)
Q Consensus 167 Fl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~---gr~qeLv~~i~eqa~ 243 (553)
.|..=...++. ++-..++..+.. .|.+-....-..-+..+.++-.. ..+. ....+++..+...
T Consensus 354 ~L~~l~~~~~~-------~~~~~l~~~l~~---~l~~~~~~~r~~a~~~l~~i~~~--~~~~~~~~~l~~il~~l~~~-- 419 (861)
T 2bpt_A 354 CLQLFAQNCGN-------HILEPVLEFVEQ---NITADNWRNREAAVMAFGSIMDG--PDKVQRTYYVHQALPSILNL-- 419 (861)
T ss_dssp HHHHHHHHHGG-------GGHHHHHHHHHH---HTTCSSHHHHHHHHHHHHHTSSS--SCHHHHHHHHHHHHHHHHHG--
T ss_pred HHHHHHHHccH-------hHHHHHHHHHHH---HcCCCChhHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHH--
Confidence 55432212222 222334455555 45444333223333334333211 0111 1112233333321
Q ss_pred ccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCC---chhhhh
Q 008797 244 LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT---PQDSRQ 320 (553)
Q Consensus 244 Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~---~~~a~~ 320 (553)
|. ..++..-...+.++.+...++.......+++.-+...++..+++= ...+......|..++..|+ ......
T Consensus 420 l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~ 494 (861)
T 2bpt_A 420 MN----DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp GG----CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred cC----CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 21 123333334444555544444433323444444444444444432 3344444555555544443 244556
Q ss_pred hhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhcCch
Q 008797 321 ILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHKAPN 364 (553)
Q Consensus 321 ~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k~P~ 364 (553)
.++.|+..|...+-.+.. ++ ..-++.+-++..++...+.
T Consensus 495 ~~~~il~~L~~~l~~~d~-~~----~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDN-EF----NARASAFSALTTMVEYATD 533 (861)
T ss_dssp GHHHHHHHHHHHHTCSCC-GG----GHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHhCcCc-ch----HHHHHHHHHHHHHHHHcch
Confidence 778888888887754221 12 3334444455555544443
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.48 E-value=0.0042 Score=65.04 Aligned_cols=130 Identities=10% Similarity=0.072 Sum_probs=81.3
Q ss_pred HHHHHhc-CCHHHHHHHhhhhhHHhccCCCc------chHHHHHhhhhhcccchhHHHHHhhccccccccCc--chhhhH
Q 008797 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL------SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP--EYLSKI 106 (553)
Q Consensus 36 ~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L------~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~--e~~~ri 106 (553)
.++...+ .++.++.-|++.+.++.+.++.- .+..+..+..++.|.+..||..|...|..+|..-. ...+.+
T Consensus 285 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 364 (588)
T 1b3u_A 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 364 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 3344444 56677777888888887777642 34566677777888888888888888888775211 224556
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHHccch-----HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 107 VDILVQLLAAEEIVERDAVHKALMSLLRQDV-----KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 107 aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~-----k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
..+|.++|.++++..+..+-.+|..+...-. ...+..|...+. +.+..+|..++..|..
T Consensus 365 ~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~-----d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE-----DAKWRVRLAIIEYMPL 428 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT-----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHH
Confidence 7777888877777777777777776665422 223333333332 2344567666665543
No 18
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.47 E-value=0.0046 Score=56.59 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=103.4
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchh
Q 008797 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL 103 (553)
Q Consensus 30 ~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~ 103 (553)
....|..+....+ .++..+.-|+..|......-|+... .++..++.+..++++.||.+|+..|-.+|.+++++.
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 3445666677666 7788888888888888776666543 478899999999999999999999999999887765
Q ss_pred hh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHccchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 104 SK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 104 ~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
.. +...|+++|.+.++..+..+-.+|..+...++. +.+..|..-+. +++..+|+.++..|..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc-----CCCHHHHHHHHHHHHH
Confidence 44 458999999999988888888888888765443 34566666655 4566788877776653
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.46 E-value=0.0065 Score=61.52 Aligned_cols=288 Identities=12% Similarity=0.076 Sum_probs=155.8
Q ss_pred CCHHHHHHHhhhhhHHhcc------------CCCcchHH----HHHhhhhhcccchhHHHHHhhccccccccC-cc-hhh
Q 008797 43 TSLKAKQLAAQLIPRFFKF------------FPDLSSRA----VDAHLDLIEEEELGVRVQAIRGLPLFCKDT-PE-YLS 104 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~------------FP~L~e~A----i~a~lDLcEDed~~IR~~aik~Lp~lck~~-~e-~~~ 104 (553)
.+..++++|+..+.++.+. |+.+.++. -+.++.++.+++..| .++...|..+++.. |+ ..+
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~ 127 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP 127 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH
Confidence 3688999999999998754 24444433 345778888888888 88888787777653 42 457
Q ss_pred hHHHHHHHHHhhc--hhHHHHHHHHHHHHHHccc-h-------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhccc
Q 008797 105 KIVDILVQLLAAE--EIVERDAVHKALMSLLRQD-V-------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFP 174 (553)
Q Consensus 105 riaDVL~QLLqsd--d~~E~~~v~~aL~sllk~D-~-------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~ 174 (553)
.+...|.++++++ ++..+..+=.+|..+.+.- + ...+..++.-+. +.+ .+..+|..+++-+..=+.-
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~-~~~--~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR-KEE--PSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHS-TTC--CCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHHHHH
Confidence 8999999999998 8888888878888777521 1 234444444443 211 1467898888766542222
Q ss_pred chhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHH----HHHHHHhhccc-cCCCCchhHHH-HHHHHHHHhhhccccC
Q 008797 175 LKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFR----MFMDFLKSLSL-FGEKAPTERMK-ELIGIIEGQADLDAQF 248 (553)
Q Consensus 175 l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~----l~m~lL~sl~~-~~~~s~~gr~q-eLv~~i~eqa~Ld~~f 248 (553)
++...- ......+++..+.. .+.+...+-.. .|..+....+- +.. ... .++.++....
T Consensus 205 ~~~~~~--~~~~~~~l~~~l~~---~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-----~~~~~l~~~~~~~~------ 268 (462)
T 1ibr_B 205 TKANFD--KESERHFIMQVVCE---ATQCPDTRVRVAALQNLVKIMSLYYQYMET-----YMGPALFAITIEAM------ 268 (462)
T ss_dssp THHHHT--SHHHHHHHHHHHHH---HTTCSSHHHHHHHHHHHHHHHHHCGGGCTT-----TTTTTHHHHHHHHH------
T ss_pred HHHhhh--hhHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH------
Confidence 221111 11234555666655 45444433222 23333332221 111 112 4555544321
Q ss_pred CCCChHHHHHHHHHHHHhhhh------hccC---------CchhhHHHHHHhhhccC----CCCCCh-------hhhhhH
Q 008797 249 NVSDADHIDRLISCLYMALPF------FLRG---------ASGSKFLNYLNKHIIPV----FDKLPE-------ERKLDL 302 (553)
Q Consensus 249 ~~sd~d~idrli~cl~~Alp~------fs~~---------v~st~f~~y~~~~IlP~----l~~l~~-------~~kl~l 302 (553)
...+++.....+.++...... +... .....++..+...++|. +.+.++ ..+...
T Consensus 269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (462)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHH
Confidence 122333322223322222111 1000 11223444334555553 332211 123334
Q ss_pred HHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhc
Q 008797 303 LKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK 361 (553)
Q Consensus 303 LK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k 361 (553)
...|..++..++ ..+++.+...+..++-+ -++..-++.++++..++..
T Consensus 349 ~~~L~~l~~~~~----~~~~~~~~~~l~~~l~~-------~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 349 GVCLMLLATCCE----DDIVPHVLPFIKEHIKN-------PDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHTT----TTHHHHHHHHHHHHTTC-------SSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhcc----HHHHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHhcC
Confidence 444444444444 25677788888877743 3688999999999999864
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.44 E-value=0.015 Score=63.27 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=100.8
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhh--hHHHHHHHHHhhchhH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS--KIVDILVQLLAAEEIV 120 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~--riaDVL~QLLqsdd~~ 120 (553)
.++-.+.+|-..+.+.- -|++.+.-+..+..+..|.++.||+.|+..|..+|+.+|+.+. .+.+.|.++|.+.++.
T Consensus 98 ~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~ 175 (591)
T 2vgl_B 98 PNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPM 175 (591)
T ss_dssp SSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHH
T ss_pred CCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChh
Confidence 67788889988888874 7888888899999999999999999999999999999999887 4889999999998988
Q ss_pred HHHHHHHHHHHHHccch--------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 121 ERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 121 E~~~v~~aL~sllk~D~--------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
.+..+=.+|..+-..+| ...+..|+..+. ..++-++-+++..+.
T Consensus 176 V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~-----~~~~~~q~~il~~l~ 227 (591)
T 2vgl_B 176 VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN-----ECTEWGQIFILDCLS 227 (591)
T ss_dssp HHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC-----CCCchHHHHHHHHHH
Confidence 88888888888887776 346788888876 345666777777664
No 21
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.44 E-value=0.0072 Score=56.78 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=107.0
Q ss_pred ccChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc-----chHHHHHhhhhhcccchhHHHHHhhccccccccCcc
Q 008797 28 SQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE 101 (553)
Q Consensus 28 ~~~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e 101 (553)
+.....|..+....+ +++..+.-|++.+.++....++- ...++..++.+..++++.||..|+..|-.+|.++++
T Consensus 8 ~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp CCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 356667888888777 77889999999998877753322 234778999999999999999999999999998877
Q ss_pred hhhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHccchHH--------HHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008797 102 YLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA--------SLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 102 ~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~--------tL~~lf~qI~~~~e~~~eE~vREr~lkFl 168 (553)
+... +...|+++|.++++..+..+-.+|..+...++.. .+..|...+. +++..+|+.++..|
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~a~~~L 162 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-----SPNEQILQEALWAL 162 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG-----CSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 7544 6778999999998888888888888887665443 5667777665 45677888877766
Q ss_pred H
Q 008797 169 R 169 (553)
Q Consensus 169 ~ 169 (553)
.
T Consensus 163 ~ 163 (252)
T 4db8_A 163 S 163 (252)
T ss_dssp H
T ss_pred H
Confidence 5
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.44 E-value=0.01 Score=62.56 Aligned_cols=301 Identities=13% Similarity=0.117 Sum_probs=170.1
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCC-Cc-----chHHHHHhhhhhcccc-hhHHHHHhhccccccccCcc
Q 008797 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFP-DL-----SSRAVDAHLDLIEEEE-LGVRVQAIRGLPLFCKDTPE 101 (553)
Q Consensus 30 ~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP-~L-----~e~Ai~a~lDLcEDed-~~IR~~aik~Lp~lck~~~e 101 (553)
..+....++.... +++..+..|++.+.+.....+ .. ...++..++.+..+++ +.||..|...|-.+|.++++
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3455777888776 778889999999999987665 22 2357888999999887 99999999999999999888
Q ss_pred hhhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHccchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008797 102 YLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 102 ~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl 168 (553)
+... +...|+++|.++++..+..+-.+|..|...++. +.+..|+..+.. ..+..++..++..|
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~----~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE----HTKLSMLRNATWTL 227 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT----TCCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc----CCCHHHHHHHHHHH
Confidence 7554 677899999999888888888888888765443 356677776632 34566777666655
Q ss_pred HhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHH-----HHHHHhhh
Q 008797 169 RDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELI-----GIIEGQAD 243 (553)
Q Consensus 169 ~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv-----~~i~eqa~ 243 (553)
..=...-+ ........-++..+-+ .|.+-+.+--......|..+-.. +..+.+.++ ..+..
T Consensus 228 ~~L~~~~~----~~~~~~~~~~l~~L~~---lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~~~~~~g~v~~Lv~--- 293 (528)
T 4b8j_A 228 SNFCRGKP----QPSFEQTRPALPALAR---LIHSNDEEVLTDACWALSYLSDG----TNDKIQAVIEAGVCPRLVE--- 293 (528)
T ss_dssp HHHHCSSS----CCCHHHHTTHHHHHHH---HTTCCCHHHHHHHHHHHHHHTSS----CHHHHHHHHHTTCHHHHHH---
T ss_pred HHHHcCCC----CCcHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCHHHHHHH---
Confidence 43111111 0112222333333334 55544433222333344433322 112212221 12221
Q ss_pred ccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHH-HHHhhhccCCCCC-----ChhhhhhHHHHHHHhCCCCCchh
Q 008797 244 LDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLN-YLNKHIIPVFDKL-----PEERKLDLLKALAEISPYTTPQD 317 (553)
Q Consensus 244 Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~-y~~~~IlP~l~~l-----~~~~kl~lLK~lAe~s~~~~~~~ 317 (553)
.+...+++.....+.++ --++.+.. .... ++...++|.|-.+ ....+...+.+|..++.. ++..
T Consensus 294 ---lL~~~~~~v~~~a~~~L----~nl~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~ 363 (528)
T 4b8j_A 294 ---LLLHPSPSVLIPALRTV----GNIVTGDD--AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQ 363 (528)
T ss_dssp ---HTTCSCHHHHHHHHHHH----HHHTTSCH--HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHH
T ss_pred ---HHcCCChhHHHHHHHHH----HHHHcCCH--HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHH
Confidence 12223333333333322 22222221 1111 1222344433222 234566667777777653 2222
Q ss_pred hh-----hhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhc-Cchhhhhc
Q 008797 318 SR-----QILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK-APNATNSL 369 (553)
Q Consensus 318 a~-----~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k-~P~~~~~~ 369 (553)
.. ..+|.+..+|.. -+....+..++++.+|+.. .|+....+
T Consensus 364 ~~~~~~~~~i~~L~~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~~l 410 (528)
T 4b8j_A 364 IQAVINAGIIGPLVNLLQT-----------AEFDIKKEAAWAISNATSGGSHDQIKYL 410 (528)
T ss_dssp HHHHHHTTCHHHHHHHHHH-----------SCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 22 345555555542 1456788889999999988 56654443
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.43 E-value=0.012 Score=62.14 Aligned_cols=134 Identities=10% Similarity=0.141 Sum_probs=100.1
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccC--CCc----chHHHHHhhhhhccc-chhHHHHHhhccccccccCcch
Q 008797 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFF--PDL----SSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEY 102 (553)
Q Consensus 31 ~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~F--P~L----~e~Ai~a~lDLcEDe-d~~IR~~aik~Lp~lck~~~e~ 102 (553)
......++...+ +++..+..|++.+.++.... |.. ...++..++.+..++ ++.||..|+..|-.+|.+++++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 345777777777 67889999999999998764 322 245788999999997 8999999999999999988776
Q ss_pred hhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHccchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 103 LSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 103 ~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
... +...|+++|.+.++..+..+-.+|..+...++. +.+..|+..+. ..+..+|..++..|.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~v~~~a~~~L~ 240 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-----SNKPSLIRTATWTLS 240 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG-----SCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc-----cCCHHHHHHHHHHHH
Confidence 543 578999999999998888888888888765432 34555555554 244556655554443
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.42 E-value=0.0045 Score=57.47 Aligned_cols=133 Identities=18% Similarity=0.224 Sum_probs=106.1
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-
Q 008797 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (553)
Q Consensus 33 ~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r- 105 (553)
....++...+ +++..+.-|+..+.....+-|+... .++..++.+..++++.||..|...|-.+|..++++...
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3555666666 7788999999999998887677655 47899999999999999999999999999888777553
Q ss_pred ----HHHHHHHHHhhchhHHHHHHHHHHHHHHccchHH--------HHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 106 ----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA--------SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 106 ----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~--------tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
+...|+++|.++++..+..+-.+|..+...++.. .+..|...+. ++++.+|+.++..|..
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~ 196 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-----STDSEVQKEAARALAN 196 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC-----CCCHHHHHHHHHHHHH
Confidence 6788999999999888888888888887755543 5666666665 5567788888877664
No 25
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.35 E-value=0.0015 Score=59.96 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=101.2
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-
Q 008797 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (553)
Q Consensus 33 ~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r- 105 (553)
....++...+ +++..+.-|+..+.......|+.... ++..++.+..+.|..||..|...|-.+|.+++++...
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556666666 77889999999999887766665433 6789999999999999999999999999988877533
Q ss_pred ----HHHHHHHHHhhchhHHHHHHHHHHHHHHccchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 106 ----IVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 106 ----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+...|+++|.++++..+..+-.+|..+...++. +.+..|..-+. ++++.+|+.+...|.
T Consensus 135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS-----HENEKIQKEAQEALE 205 (210)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG-----CSCHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 678999999999888888888888888876443 33445544444 455667777776554
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.34 E-value=0.021 Score=54.35 Aligned_cols=128 Identities=14% Similarity=0.218 Sum_probs=99.6
Q ss_pred CCHHHHHHHhhhhhHHhccCCCc----chHHHHHhhhhhc-ccchhHHHHHhhccccccccCc----chhhhHHHHHHHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDL----SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTP----EYLSKIVDILVQL 113 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L----~e~Ai~a~lDLcE-Ded~~IR~~aik~Lp~lck~~~----e~~~riaDVL~QL 113 (553)
.+-++++-|+.-|......-|++ -.+-++++..+.. |.+..||..|.+.|..+|+.-. .|+..+...|...
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK 106 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56677777777777776654432 2477889999995 9999999999999999997532 4677888888998
Q ss_pred HhhchhHHHHHHHHHHHHHHcc-chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccc
Q 008797 114 LAAEEIVERDAVHKALMSLLRQ-DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPL 175 (553)
Q Consensus 114 Lqsdd~~E~~~v~~aL~sllk~-D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l 175 (553)
|.+..+..+.++..+|.+++.. .....+..|+..+. .....+|+.++.||..-+...
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~-----~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS-----NKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHHHHHc
Confidence 8888889999999999999986 44555666666654 345679999999998766554
No 27
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.27 E-value=0.019 Score=63.31 Aligned_cols=296 Identities=9% Similarity=0.005 Sum_probs=149.6
Q ss_pred CHHHHHHHhhhhhHHhccCCCc-c-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcch----hh-hHHHHHHH
Q 008797 44 SLKAKQLAAQLIPRFFKFFPDL-S-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY----LS-KIVDILVQ 112 (553)
Q Consensus 44 s~k~K~LAaqfI~kffk~FP~L-~-----e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~----~~-riaDVL~Q 112 (553)
+...+..|.+-+..+..++++- . +..+..+..++.|+|..||..|++.|..++...+++ +. .+.+++.+
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5788888888888877665532 1 235777788889999999999999999999877654 44 67777777
Q ss_pred HHhhchhHHHHHHHHHHHHHHccch----------------------------HHHHHHHHHhhccCCCC--CChHHHHH
Q 008797 113 LLAAEEIVERDAVHKALMSLLRQDV----------------------------KASLTALFKHIGSVDEP--STDEFIRE 162 (553)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D~----------------------------k~tL~~lf~qI~~~~e~--~~eE~vRE 162 (553)
.+..+++..+..+-..+.++.+..+ ...+..++..+...++. +++..+|.
T Consensus 267 ~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~ 346 (876)
T 1qgr_A 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHH
Confidence 7777666655555555555543310 22344455555432221 11224676
Q ss_pred HHHHHHHhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCch---hHHHHHHHHHH
Q 008797 163 KVLSFIRDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPT---ERMKELIGIIE 239 (553)
Q Consensus 163 r~lkFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~---gr~qeLv~~i~ 239 (553)
-+...|..=...++. ++-..++..+.. .|.|-....-...+..+..+-.. ..|. ....+++..+.
T Consensus 347 ~a~~~l~~l~~~~~~-------~~~~~~l~~l~~---~l~~~~~~~r~~a~~~l~~i~~~--~~~~~~~~~~~~~l~~l~ 414 (876)
T 1qgr_A 347 AAGVCLMLLATCCED-------DIVPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEG--PEPSQLKPLVIQAMPTLI 414 (876)
T ss_dssp HHHHHHHHHHHHHGG-------GGHHHHHHHHHH---HTTCSSHHHHHHHHHHHHHTSSS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcH-------hhHHHHHHHHHH---HccCCChHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHH
Confidence 555554432111221 222334445555 45454332222223333322211 0111 11223444433
Q ss_pred HhhhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCC-----
Q 008797 240 GQADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTT----- 314 (553)
Q Consensus 240 eqa~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~----- 314 (553)
.. | ...++..-.....++.+....+.......+++.-+...++..+++ +...+...++.|..++..|+
T Consensus 415 ~~--l----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~ 487 (876)
T 1qgr_A 415 EL--M----KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADV 487 (876)
T ss_dssp HH--H----TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HH--h----CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhcccc
Confidence 22 2 112222223334444443333333222335555555555555554 33345555555555443322
Q ss_pred --------chhhhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHh
Q 008797 315 --------PQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHL 358 (553)
Q Consensus 315 --------~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L 358 (553)
.......++.|...|...+-........+.-..+||+-.....+
T Consensus 488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 488 ADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred ccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence 12233466778888888776543222334444555554444333
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.99 E-value=0.0074 Score=60.98 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=104.0
Q ss_pred HHHHHH-Hhc-CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcc-cchhHHHHHhhccccccccCcchhhh
Q 008797 34 YEGIIE-AAK-TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSK 105 (553)
Q Consensus 34 y~~Il~-~~k-gs~k~K~LAaqfI~kffk~FP~L~e-----~Ai~a~lDLcED-ed~~IR~~aik~Lp~lck~~~e~~~r 105 (553)
...++. ..+ +++..+.-|+..|..-...-|+.+. .|+..++.|... .+..||..|+..|..+|++++.....
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 455666 555 7899999999999999999998876 467789999985 48899999999999999998765433
Q ss_pred -----HHHHHHHHHhhchhHHHHHHHHHHHHHHccch--------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 106 -----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 106 -----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~--------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
+..+|+++|++.++.-...+-.+|..+...++ .+.+..|+..+. +.+..+|+.++.-|..
T Consensus 163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~-----~~d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR-----TEHSPFHEHVLGALCS 235 (296)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT-----SCCSTHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc-----CCChhHHHHHHHHHHH
Confidence 55599999999888888888888888876544 356677777776 4456788888877664
No 29
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.93 E-value=0.015 Score=56.02 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=61.9
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (553)
.++.++.-|+.-+.++-...|.....++..++.+..|+++.||..|+..|..+... ...+.|.++|.++++..+
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr 176 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------ATIPLLINLLKDPNGDVR 176 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTCSSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHcCCCHHHH
Confidence 45556666666666665555555556666666666666666666666666655431 245556666666665555
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008797 123 DAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 123 ~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl 168 (553)
..+-.+|..+ ..+....+..|...+. +++..+|..++.-|
T Consensus 177 ~~a~~aL~~~-~~~~~~~~~~L~~~l~-----d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 177 NWAAFAININ-KYDNSDIRDCFVEMLQ-----DKNEEVRIEAIIGL 216 (280)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTT-----CSCHHHHHHHHHHH
T ss_pred HHHHHHHHhh-ccCcHHHHHHHHHHhc-----CCCHHHHHHHHHHH
Confidence 5555555443 2233444555555443 33445565555443
No 30
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.88 E-value=0.073 Score=62.15 Aligned_cols=275 Identities=16% Similarity=0.184 Sum_probs=155.4
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcc----hHHHHHhhhhhcccchhHHHHHhhccccccccC-------------------
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLS----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT------------------- 99 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~----e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~------------------- 99 (553)
.+.++++-|+..+..+...+|+.- ++.+..+++...|.+..||..|+..|..+|+..
T Consensus 345 ~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred cCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch
Confidence 446779999999999998888632 233556677778999999999999999888632
Q ss_pred ----cchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccch-------HHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008797 100 ----PEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV-------KASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 100 ----~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~-------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl 168 (553)
..+++.+...|.++|+++++.++..+-.+|..++...+ ...+..++..+.+ +.....+|+.++.++
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d---~~~~~~v~~~a~~~l 501 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND---KSSSSNLKIDALSCL 501 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTC---SSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcC---CCCcchHHHHHHHHH
Confidence 24788899999999999998888888888888877533 3445555555542 112346888888887
Q ss_pred HhhcccchhhhcCChHHHHHHHHHHHHHHhhhcccccHH----HHHHHHHHHhhccccCCC---CchhHHHHHHHHHHHh
Q 008797 169 RDKVFPLKAELLKPQEEMERHITDLIKKVLQSLEDVTGA----EFRMFMDFLKSLSLFGEK---APTERMKELIGIIEGQ 241 (553)
Q Consensus 169 ~~kl~~l~~e~l~~~eE~E~~i~~~ikK~~~vL~dVT~e----EF~l~m~lL~sl~~~~~~---s~~gr~qeLv~~i~eq 241 (553)
..-+...+.+.+ ..++-..+..++..++|-... =...+-++...+...... .-......++..+...
T Consensus 502 ~~~~~~~~~~~~------~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 575 (1230)
T 1u6g_C 502 YVILCNHSPQVF------HPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR 575 (1230)
T ss_dssp HHHHHSSCGGGG------HHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHH------HhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH
Confidence 765544433322 222222222222245553321 111233333332210000 0001123455554432
Q ss_pred hhccccCCCCChHHHHHHHHHHHHhhhhhccCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhh
Q 008797 242 ADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQI 321 (553)
Q Consensus 242 a~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~ 321 (553)
|.. ...|++.-...+.|+......+.... .+++.-+...+.+.+. .+..+...++.+.+++......+....
T Consensus 576 --l~~--~d~~~~vr~~a~~~lg~L~~~~g~~~--~~~~~~~l~~L~~~l~--~e~~r~~~~~al~~i~~~~~~~~~~~~ 647 (1230)
T 1u6g_C 576 --LKA--ADIDQEVKERAISCMGQIICNLGDNL--GSDLPNTLQIFLERLK--NEITRLTTVKALTLIAGSPLKIDLRPV 647 (1230)
T ss_dssp --HSC--SSSCHHHHHHHHHHHHHHHHHTGGGC--CTHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHTTCSSCCCCHHH
T ss_pred --Hhc--cCCCHHHHHHHHHHHHHHHHHhCchh--hhhHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhCccccchHHH
Confidence 211 12344444566777777666554332 2333333333333322 234567788888888765544444455
Q ss_pred hHHHHHHHHHhcC
Q 008797 322 LPSVAVLLKKYMP 334 (553)
Q Consensus 322 l~~i~~~L~~~mP 334 (553)
++.|...|...+-
T Consensus 648 ~~~i~~~L~~~l~ 660 (1230)
T 1u6g_C 648 LGEGVPILASFLR 660 (1230)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 5666666655553
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.86 E-value=0.0038 Score=58.68 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=95.0
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc-----chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhh--
Q 008797 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS-- 104 (553)
Q Consensus 33 ~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~-- 104 (553)
....++...+ +++..+.-|+..+.......+.. ...++..++++..+++..||..|+..|..+|..+++...
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 176 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3455566555 77888999999888887765543 124788999999999999999999999999998877653
Q ss_pred ---hHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHH--------HHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 105 ---KIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA--------SLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 105 ---riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~--------tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
.+...|+++|.+.++..+..+-.+|..+...++.. .+..|...+. ++++.+|+.+...|.
T Consensus 177 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 177 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS-----HENEKIQKEAQEALE 247 (252)
T ss_dssp HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT-----CSSSHHHHTHHHHHH
T ss_pred HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC-----CCCHHHHHHHHHHHH
Confidence 35789999999988888888888888887655432 3333433333 334456665555443
No 32
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.84 E-value=0.02 Score=52.31 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=94.2
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH
Q 008797 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (553)
Q Consensus 29 ~~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ria 107 (553)
-+...+..+|...+ +++.++.-|+..+.++-. ..++..++.+..|+|..||..|++.|..++. +...
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------~~~~ 78 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAV 78 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGH
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHH
Confidence 46778889999888 889999999999887643 4789999999999999999999999998874 2577
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+.|..+|.++++..+..+-.+|..+-.. ..+..|...+. +.+..+|..++.-|.
T Consensus 79 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~---~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 79 EPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLIKALK-----DEDWFVRIAAAFALG 132 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 8899999998888888777777665433 34455555554 456778888877654
No 33
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.83 E-value=0.011 Score=54.59 Aligned_cols=119 Identities=22% Similarity=0.255 Sum_probs=85.0
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008797 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (553)
Q Consensus 31 ~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDV 109 (553)
.+....++...+ +++.++..|+..+.++- ..+++..++.+..|+|+.||..|+..|..++. +...+.
T Consensus 49 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~ 116 (211)
T 3ltm_A 49 ERAVEPLIKALKDEDAWVRRAAADALGQIG------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEP 116 (211)
T ss_dssp GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHH
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHH
Confidence 356666777666 67888888888887764 25688888888899999999999999988864 246778
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
|.++|.++++..+..+-.+|-.+-. ...+..|...+. +.+..||..++.-|.
T Consensus 117 L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 117 LIKALKDEDWFVRIAAAFALGEIGD---ERAVEPLIKALK-----DEDGWVRQSAADALG 168 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 8888888888888777777766633 234444544443 445677776665544
No 34
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.80 E-value=0.011 Score=53.99 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=99.3
Q ss_pred hhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHH
Q 008797 31 VKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDI 109 (553)
Q Consensus 31 ~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDV 109 (553)
.+....++...+ +++.++.-|+..+.++- ..+++..++.+..|+|+.||..|++.|-.++. +...+.
T Consensus 44 ~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~ 111 (201)
T 3ltj_A 44 ERAVEPLIKALKDEDAWVRRAAADALGQIG------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEP 111 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHH
Confidence 355667777766 77888888888888763 24788999999999999999999999988864 257788
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhh----c-ccchhhhcCChH
Q 008797 110 LVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDK----V-FPLKAELLKPQE 184 (553)
Q Consensus 110 L~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~k----l-~~l~~e~l~~~e 184 (553)
|.++|.++++..+..+-.+|-.+-. ...+..|...+. +++..+|..++.-|..- . ..+..-+-.+..
T Consensus 112 L~~~l~d~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~-----d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~ 183 (201)
T 3ltj_A 112 LIKALKDEDWFVRIAAAFALGEIGD---ERAVEPLIKALK-----DEDGWVRQSAADALGEIGGERVRAAMEKLAETGTG 183 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTC---GGGHHHHHHHTT-----CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHc-----CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCH
Confidence 8889988888888888777776643 334455554444 44567887766655431 1 112222222445
Q ss_pred HHHHHHHHHHHH
Q 008797 185 EMERHITDLIKK 196 (553)
Q Consensus 185 E~E~~i~~~ikK 196 (553)
++.......+.+
T Consensus 184 ~vr~~A~~aL~~ 195 (201)
T 3ltj_A 184 FARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655555
No 35
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.79 E-value=0.2 Score=48.07 Aligned_cols=123 Identities=9% Similarity=-0.003 Sum_probs=90.8
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH-
Q 008797 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ- 112 (553)
Q Consensus 35 ~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~Q- 112 (553)
..++...+ +++.++..|+.-+.+.- ...++..++.++.|++..||..|+..|..++... +.+..+..+|.+
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-KCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-ccchHHHHHHHHH
Confidence 45555555 67788888888887764 4689999999999999999999999999987543 456667777774
Q ss_pred HHhhchhHHHHHHHHHHHHHHccc---hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 113 LLAAEEIVERDAVHKALMSLLRQD---VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 113 LLqsdd~~E~~~v~~aL~sllk~D---~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
++.++++..+..+-.+|..+-..+ ....+..|...+. +.+..+|..++.-|.
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~-----d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAIS 153 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 567777888888888888876543 3345555555554 556778888877655
No 36
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.76 E-value=0.011 Score=54.36 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=93.2
Q ss_pred cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH
Q 008797 29 QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV 107 (553)
Q Consensus 29 ~~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ria 107 (553)
.+.+....++...+ +++..+..|+..+.++-. ..++..++.+..|+|..||..|++.|..++. +...
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~ 83 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAV 83 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------GGGH
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------HHHH
Confidence 56777888888777 778898888888887643 5899999999999999999999999999874 3567
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 108 DILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+.|.++|.++++..+..+-.+|..+-. ...+..|...+. +++..+|..++.-|.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~---~~~~~~L~~~l~-----d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIGD---ERAVEPLIKALK-----DEDWFVRIAAAFALG 137 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC---GGGHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 889999999988887777777766543 334455555444 556678887776554
No 37
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.58 E-value=0.014 Score=58.49 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=54.9
Q ss_pred CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHH
Q 008797 63 PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLT 142 (553)
Q Consensus 63 P~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~ 142 (553)
|+|-++-++.++.++.|.+..||++.+.=|-+.|+..+++++++.+.|.-||..+++..+..+=.+..++|+.
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~------- 120 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKN------- 120 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-------
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-------
Confidence 5555566667777777777778888888787888877888888888887777766665554444444445443
Q ss_pred HHHHhhcc
Q 008797 143 ALFKHIGS 150 (553)
Q Consensus 143 ~lf~qI~~ 150 (553)
.|.|+..
T Consensus 121 -~l~~i~~ 127 (257)
T 3gs3_A 121 -GLQYLCS 127 (257)
T ss_dssp -HHHHHTT
T ss_pred -HHHHHhc
Confidence 5666664
No 38
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.49 E-value=0.0053 Score=64.87 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=64.3
Q ss_pred cCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc
Q 008797 61 FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 61 ~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (553)
.=|+|-++-++-++.++-|.+..||++.+-=|-+.|+..+|++.++.|+|.-||.++++..+..|=.+..++|+.
T Consensus 56 ~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl 130 (386)
T 3o2t_A 56 KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKV 130 (386)
T ss_dssp TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 357788888889999999999999999999999999999999999999999999988887666666666666644
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.34 E-value=0.11 Score=56.98 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=84.4
Q ss_pred HHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHH
Q 008797 50 LAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKAL 129 (553)
Q Consensus 50 LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL 129 (553)
=|++.|-.. ..-|++...|++.+..++++.|++||..|+..|-.++..+|+.+.+.-+.+..+|..+|..-+..+=..|
T Consensus 296 ea~~~i~~l-~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL 374 (618)
T 1w63_A 296 ETVLTIMDI-KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELS 374 (618)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHH
Confidence 344444432 2235556679999999999999999999999999999999998888888888899988877666666666
Q ss_pred HHHHccc-hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 130 MSLLRQD-VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 130 ~sllk~D-~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
..+...+ ....+..|...+. +.++.+|..++..|.
T Consensus 375 ~~l~~~~nv~~iv~eL~~~l~-----~~d~e~r~~~v~~I~ 410 (618)
T 1w63_A 375 FALVNGNNIRGMMKELLYFLD-----SCEPEFKADCASGIF 410 (618)
T ss_dssp HHHCCSSSTHHHHHHHHHHHH-----HCCHHHHHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHH-----hCCHHHHHHHHHHHH
Confidence 6666553 5567777877776 445667776666544
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.33 E-value=0.09 Score=59.32 Aligned_cols=127 Identities=16% Similarity=0.173 Sum_probs=85.8
Q ss_pred HHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch-----hhhHHHH
Q 008797 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDI 109 (553)
Q Consensus 36 ~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~-----~~riaDV 109 (553)
.++.... ++...++-++++|.. - .-+.+...+|..++.|..++|+.||..|+..|-.||.+...- .+.+...
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~-~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINY-Q-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp -------CCSCHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHh-h-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 3444333 667777778888763 2 235677889999999999999999999999999999865311 1346778
Q ss_pred HHHHHhhc-hhHHHHHHHHHHHHHHccc-h------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 110 LVQLLAAE-EIVERDAVHKALMSLLRQD-V------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 110 L~QLLqsd-d~~E~~~v~~aL~sllk~D-~------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
|+++|.++ ++..+..+-.+|..|-..+ + .+.+..|+..+. ++++.+|..++..|.
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~-----~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG-----SPVDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 88899875 6667777777777754321 1 245666666665 446777777776555
No 41
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.30 E-value=0.058 Score=62.97 Aligned_cols=136 Identities=17% Similarity=0.176 Sum_probs=96.7
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhcc-C----CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCc-chhhh
Q 008797 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKF-F----PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTP-EYLSK 105 (553)
Q Consensus 33 ~y~~Il~~~k-gs~k~K~LAaqfI~kffk~-F----P~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~-e~~~r 105 (553)
.+..+|.... .++..++.|...+-++++. + |+..+..+..+++...|.+..||..|++.|..++..-+ +++..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~ 86 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET 86 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455666665 6667777776767666542 1 23456788999999999999999999999998886543 46788
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHccch-------------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhc
Q 008797 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDV-------------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (553)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~-------------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl 172 (553)
+.+.|.+.|.++++..+..+-.+|.++...-+ ...+..|+..+.+ +++..+|+-++..+..-+
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~----~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK----QEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC----CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHHH
Confidence 99999999988888888888889888875532 2334444444431 244567888887776544
No 42
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.13 E-value=0.027 Score=48.82 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=75.9
Q ss_pred HHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHH
Q 008797 35 EGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQL 113 (553)
Q Consensus 35 ~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QL 113 (553)
..++...+ .++..+..|+..+.++ .+.++..++.+..|+|+.||..|++.|-.++. +...+.|..+
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~-------~~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~ 81 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRM-------GDEAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKL 81 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSC-------SSTTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh-------CchHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHH
Confidence 33444444 4555666666655543 22357889999999999999999999999874 3578888899
Q ss_pred HhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008797 114 LAAEEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 114 Lqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl 168 (553)
|.++++..+..+-.+|..+- ....+..|...+. +++..||..++.-|
T Consensus 82 L~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~-----d~~~~vr~~A~~aL 128 (131)
T 1te4_A 82 LEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAE-----TGTGFARKVAVNYL 128 (131)
T ss_dssp HHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTT-----SCCTHHHHHHHHHG
T ss_pred HcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 98888888888877777654 3445566655554 34567887776544
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.07 E-value=0.75 Score=48.81 Aligned_cols=118 Identities=17% Similarity=0.168 Sum_probs=80.2
Q ss_pred CHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-----HHHHHHHH
Q 008797 44 SLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQL 113 (553)
Q Consensus 44 s~k~K~LAaqfI~kffk~FP~L~e-----~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r-----iaDVL~QL 113 (553)
++..+.-||.-+...-..-|+... -||..++.|..+++..||.+|+..|-.+|.+++++-.. +.+.|+++
T Consensus 114 ~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l 193 (510)
T 3ul1_B 114 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193 (510)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence 466777777777776665555432 36778899999999999999999999999998876443 46789999
Q ss_pred HhhchhHH-----HHHHHHHHHHHHccc--------hHHHHHHHHHhhccCCCCCChHHHHHHHHH
Q 008797 114 LAAEEIVE-----RDAVHKALMSLLRQD--------VKASLTALFKHIGSVDEPSTDEFIREKVLS 166 (553)
Q Consensus 114 Lqsdd~~E-----~~~v~~aL~sllk~D--------~k~tL~~lf~qI~~~~e~~~eE~vREr~lk 166 (553)
|.+.+..+ +..+..+|..+.+.. ..+.+..|...+. ++++.++..+..
T Consensus 194 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-----~~~~~v~~~A~~ 254 (510)
T 3ul1_B 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-----HNDPEVLADSCW 254 (510)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT-----CSCHHHHHHHHH
T ss_pred HHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh-----cCCHHHHHHHHH
Confidence 98765432 334555666665532 1345555555554 556667665544
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.90 E-value=2.2 Score=45.18 Aligned_cols=117 Identities=13% Similarity=0.216 Sum_probs=86.4
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhcc--CCCcc----hHHHHHhhhhhc-ccchhHHHHHhhccccccccCcchhh
Q 008797 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKF--FPDLS----SRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLS 104 (553)
Q Consensus 33 ~y~~Il~~~k-gs~k~K~LAaqfI~kffk~--FP~L~----e~Ai~a~lDLcE-Ded~~IR~~aik~Lp~lck~~~e~~~ 104 (553)
....|+.+.+ ++...+.-|.+-+.|.-.. -|-.+ .-+|-.++.|.. ++++.|+..|...|-.||.+++++..
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4788999999 5566666777877777532 23221 125667888775 55588999999999999999999876
Q ss_pred hH-----HHHHHHHHhhchhHHHHHHHHHHHHHHccchH--------HHHHHHHHhhc
Q 008797 105 KI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIG 149 (553)
Q Consensus 105 ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tL~~lf~qI~ 149 (553)
.| +..|+++|.+.++..+..+-.+|..|-.-.+. |.+..|...+.
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence 65 45899999999999888888888888765443 34555666665
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.68 E-value=1.5 Score=46.48 Aligned_cols=118 Identities=12% Similarity=0.177 Sum_probs=88.2
Q ss_pred hhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCC--c----chHHHHHhhhhhc-ccchhHHHHHhhccccccccCcchh
Q 008797 32 KDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPD--L----SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYL 103 (553)
Q Consensus 32 ~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~--L----~e~Ai~a~lDLcE-Ded~~IR~~aik~Lp~lck~~~e~~ 103 (553)
..+..|+.+.+ +++..+.-|.+.+.|+...=++ . ..-+|..++.+.. ++++.|+..|...|-.+|.+++++.
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 35788999998 5666777777888887643322 2 2335667888885 5668899999999999999998876
Q ss_pred hhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHccchH--------HHHHHHHHhhc
Q 008797 104 SKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIG 149 (553)
Q Consensus 104 ~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tL~~lf~qI~ 149 (553)
..| ...|++||.+.++.....+-.+|-.|-..++. |.+..|...+.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~ 214 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh
Confidence 554 56899999999998888888899888766543 34555666665
No 46
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.56 E-value=0.02 Score=49.66 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=70.8
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH
Q 008797 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (553)
Q Consensus 34 y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~Q 112 (553)
...++...+ .++.++..|+.-+.++- ...|+..++.+.+|+|+.||..|+..|..++. +...+.|.+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------~~a~~~L~~ 111 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------ERVRAAMEK 111 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------HHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHH
Confidence 567777766 77889999998888764 26899999999999999999999999999973 467889999
Q ss_pred HHhhchhHHHHHHHHHHH
Q 008797 113 LLAAEEIVERDAVHKALM 130 (553)
Q Consensus 113 LLqsdd~~E~~~v~~aL~ 130 (553)
+|.++++..+..+-.+|.
T Consensus 112 ~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 112 LAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HTTSCCTHHHHHHHHHGG
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 999888887777777664
No 47
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.34 E-value=3.3 Score=44.92 Aligned_cols=132 Identities=14% Similarity=0.064 Sum_probs=91.2
Q ss_pred hhHHHHHHHhc-C-CHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchh-
Q 008797 32 KDYEGIIEAAK-T-SLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL- 103 (553)
Q Consensus 32 ~~y~~Il~~~k-g-s~k~K~LAaqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~- 103 (553)
.....++.... + ++..++-|+..+..+..+ ++.. ..+|..++.+..++++.||..|+..|-.+|.++++..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 44555666554 4 788999999988865543 3322 2478899999999999999999999999998865543
Q ss_pred ----hhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008797 104 ----SKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 104 ----~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl 168 (553)
..+...|+++|.++++.+..++-.+|..+-..++. +.+..|..-+.+ .+.+.+++.+...|
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~----~~~~~~~~~a~~~L 207 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT----YTYEKLLWTTSRVL 207 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT----CCCHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc----CChHHHHHHHHHHH
Confidence 34678999999998887777776777766643322 345555555542 22455666555543
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.32 E-value=1.1 Score=49.19 Aligned_cols=130 Identities=10% Similarity=0.038 Sum_probs=101.4
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHH
Q 008797 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (553)
Q Consensus 34 y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~Q 112 (553)
|-.++.... .+...||++--.+..|++.-||+.--++|++..=+.|.++.||--|++.|..++ +|+++.-+..-+.+
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~~l~~~v~~ 153 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG--SREMAEAFAGEIPK 153 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHHHHTTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHHHHHHHHHH
Confidence 555666555 678999999999999999999999999999987777999999999999999996 47899989999999
Q ss_pred HH--hhchhHHHHHHHHHHHHHHccchHH-----HHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 113 LL--AAEEIVERDAVHKALMSLLRQDVKA-----SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 113 LL--qsdd~~E~~~v~~aL~sllk~D~k~-----tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
+| .+.+|-.+..+=-|+..+++.+|.. .+..+.. +.. +.+-.|+.-++..+.+
T Consensus 154 ~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~-lL~----d~d~~V~~~a~~~l~~ 213 (621)
T 2vgl_A 154 ILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVH-LLN----DQHLGVVTAATSLITT 213 (621)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHH-HTT----CSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHH-HhC----CCCccHHHHHHHHHHH
Confidence 99 7788888888888888888887642 2223333 331 2334577777665554
No 49
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.19 E-value=0.046 Score=54.63 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=98.2
Q ss_pred chHHHHHHHHHhhhhhhccccccChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHH
Q 008797 7 EAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVR 85 (553)
Q Consensus 7 ~~~~ie~LY~~~~~L~~akdk~~~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR 85 (553)
+++-++.|.+..+.+-+ +|.+--.+=|.+|+.... .+...++..+.||..=|+.-|++...+++++..|++|+|+.|-
T Consensus 29 ~~~kl~~L~qa~el~~~-~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~ 107 (257)
T 3gs3_A 29 PSTKCELLAKVQETVLG-SCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHHHTT-TTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred cHHHHHHHHHHHHHHHc-cCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 36779999998883322 344345566777777554 7788999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCcchhhhHHHHHHHHHhh-chhHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHH
Q 008797 86 VQAIRGLPLFCKDTPEYLSKIVDILVQLLAA-EEIVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKV 164 (553)
Q Consensus 86 ~~aik~Lp~lck~~~e~~~riaDVL~QLLqs-dd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~ 164 (553)
+.+|-..-.+.+- ..|.+.. ....+...-.+..++-+|. .+++.+. ++.+.+|-.+
T Consensus 108 K~~I~~~~~iY~~-----------~l~~i~~~~~~~~~~~~~W~~m~~lK~-------~Il~~~~-----s~n~gvkl~~ 164 (257)
T 3gs3_A 108 KRVIQACGSIYKN-----------GLQYLCSLMEPGDSAEQAWNILSLIKA-------QILDMID-----NENDGIRTNA 164 (257)
T ss_dssp HHHHHHHHHHHHH-----------HHHHHTTSSSCCHHHHHHHHHHHHHHH-------HHHHGGG-----SSCHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------HHHHHhcCCCCcchHHHHHHHHHHHHH-------HHHHHHc-----cCCcchHHHH
Confidence 9999877666653 2233333 2223333334444555554 3445444 4567889999
Q ss_pred HHHHH
Q 008797 165 LSFIR 169 (553)
Q Consensus 165 lkFl~ 169 (553)
+||+.
T Consensus 165 iKF~e 169 (257)
T 3gs3_A 165 IKFLE 169 (257)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98854
No 50
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.18 E-value=0.04 Score=55.55 Aligned_cols=121 Identities=12% Similarity=0.177 Sum_probs=85.8
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcch-----HHHHHhhh-hhcccchhHHHHHhhccccccccCcchhhh-----HHHHHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSS-----RAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILV 111 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e-----~Ai~a~lD-LcEDed~~IR~~aik~Lp~lck~~~e~~~r-----iaDVL~ 111 (553)
++...|..|...+..+....+ .+. -++..++. |....++.||.+|...|-.++.++|++-.. +...|+
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 345677778777777776433 232 36778888 999999999999999999999999876433 557899
Q ss_pred HHHhhc-hhHHHHHHHHHHHHHHccchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 112 QLLAAE-EIVERDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 112 QLLqsd-d~~E~~~v~~aL~sllk~D~k--------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+||.++ ++..+..+-.||..+.+.++. +.+..|...+. +++..++.++...|+
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~-----~~d~~v~~~A~~aLs 192 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-----QQVQKLKVKSAFLLQ 192 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-----SSCHHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 999976 667778888899998876543 23444444444 445566665554433
No 51
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.14 E-value=3.5 Score=42.47 Aligned_cols=129 Identities=13% Similarity=0.057 Sum_probs=89.0
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc-----chHHHHHhhhhhcc-cchhHHHHHhhccccccccCcchhhh-
Q 008797 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSK- 105 (553)
Q Consensus 34 y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L-----~e~Ai~a~lDLcED-ed~~IR~~aik~Lp~lck~~~e~~~r- 105 (553)
...++...+ +++..+..|+..+.+.-.+-+.. ...++..++.+..+ +|..+|..|.+.|-.+|++. ++...
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i 97 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAI 97 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-HHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-hhHHHH
Confidence 444555444 67888888888888776543321 23678888888754 48899999999999999863 45444
Q ss_pred ----HHHHHHHHHhhchhHHHHHHHHHHHHHHccch--------HHHHHHHHHhhccCCCCCChHHHHHHHHHHH
Q 008797 106 ----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 106 ----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~--------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl 168 (553)
+...|+++|.++++.....+-.+|..+...++ .+.+..|...+. +++..+|+.+...|
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-----~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-----KTNVKFLAITTDCL 167 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-----CCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHh-----cCCHHHHHHHHHHH
Confidence 45589999999988777777778877766532 455666666665 34455666544433
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.07 E-value=0.16 Score=48.07 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=45.7
Q ss_pred HHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccc-cccCc-----chhhhHHH
Q 008797 36 GIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLF-CKDTP-----EYLSKIVD 108 (553)
Q Consensus 36 ~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~l-ck~~~-----e~~~riaD 108 (553)
.|++..+ .++.++.-|+..+..++...+ -+.-+..++....+.++.||..++.-|+.+ +..+| .|++.+..
T Consensus 102 ~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p 179 (242)
T 2qk2_A 102 SLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179 (242)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 3444433 334444445555554444433 133444444555555555555555555552 22111 24445555
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHcc
Q 008797 109 ILVQLLAAEEIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 109 VL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (553)
.|+++|....+..+.++..+|..+.+.
T Consensus 180 ~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 180 SLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 555555555555555555554444443
No 53
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.03 E-value=1 Score=46.48 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=69.0
Q ss_pred CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch-----hhhHHHHHHHHHhhc-hhHHHHHHHHHHHHHHcc
Q 008797 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLAAE-EIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~-----~~riaDVL~QLLqsd-d~~E~~~v~~aL~sllk~ 135 (553)
-|++...++..+..|..++|+.||..|+..|-.+|.+.+.- ...+...|+++|.+. ++..+..+-.+|..+-..
T Consensus 11 ~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp ------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 36677788999999999999999999999999999876421 124678889999865 666666666677665432
Q ss_pred c-------hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 136 D-------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 136 D-------~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+ -.+.+..|...+. ++++.++..++..|.
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~-----~~~~~v~~~a~~~L~ 126 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLG-----SPVDSVLFYAITTLH 126 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT-----CSCHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 1 1245556666555 455677777776555
No 54
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.95 E-value=1.7 Score=46.17 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=85.6
Q ss_pred HHHHHHhhhhhHHhccCCCc-----chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-----HHHHHHHHHh
Q 008797 46 KAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLA 115 (553)
Q Consensus 46 k~K~LAaqfI~kffk~FP~L-----~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r-----iaDVL~QLLq 115 (553)
...+-|+..+......-+.. ...++..+..|+.++|+.|+..|...|..+|...++...- +...|+++|.
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 45667777777776644322 2568899999999999999999999999999888766443 5678999999
Q ss_pred hchhHHHHHHHHHHHHHHccchHHH--------HHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 116 AEEIVERDAVHKALMSLLRQDVKAS--------LTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 116 sdd~~E~~~v~~aL~sllk~D~k~t--------L~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+.++.....+-.+|..+...++..+ +..|..-+. +.++.+|+.+.-.|.
T Consensus 304 ~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~-----~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 304 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-----NPKTNIQKEATWTMS 360 (529)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc-----CCCHHHHHHHHHHHH
Confidence 9998888888888888877665433 223333333 455667766655444
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.83 E-value=1 Score=48.94 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=58.8
Q ss_pred CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch-----hhhHHHHHHHHHhhc-hhHHHHHHHHHHHHHHcc
Q 008797 62 FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-----LSKIVDILVQLLAAE-EIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 62 FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~-----~~riaDVL~QLLqsd-d~~E~~~v~~aL~sllk~ 135 (553)
-+.+...+|..+..|..++|+.||..|.+.|-.+|.+.+.- ...+...|+++|.+. ++..+..+-.+|..|-..
T Consensus 8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 45566667777777777778888888888888888766421 124566677777754 555555555555543322
Q ss_pred c-------hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 136 D-------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 136 D-------~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+ -.+.+..|...+. ++++.+|+.++.-|.
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~ 123 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLG-----SPVDSVLFYAITTLH 123 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 1 1134455555554 345566666555444
No 56
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.52 E-value=2.5 Score=47.58 Aligned_cols=130 Identities=13% Similarity=0.060 Sum_probs=92.0
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCc-----chHHHHHhhhhhcc-cchhHHHHHhhccccccccCcchhhh-
Q 008797 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDL-----SSRAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSK- 105 (553)
Q Consensus 34 y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L-----~e~Ai~a~lDLcED-ed~~IR~~aik~Lp~lck~~~e~~~r- 105 (553)
...++...+ .++.+++-|+..|....++.+.. ...+|..++.+..+ +|+.+|..|.+.|-.++.+. ++...
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~~~~i 230 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAI 230 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhHHHH
Confidence 333444333 67889999999998887755432 34688998888764 48999999999999998863 44322
Q ss_pred ----HHHHHHHHHhhchhHHHHHHHHHHHHHHccch--------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 106 ----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 106 ----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~--------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+...|+++|+++++..+..+-.+|..|...++ .+.+..|...+. +++..+++.++..|.
T Consensus 231 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~-----~~~~~v~~~a~~aL~ 301 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-----KTNVKFLAITTDCLQ 301 (780)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGG-----CCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 56789999999988888888888888876532 355666766665 345567776554443
No 57
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=94.31 E-value=0.11 Score=51.63 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=84.6
Q ss_pred CCHHHHHHHhhhhhHHhc-cCCCcchHHHHHhhhhhcccchhHHHHHhhcccccccc--CcchhhhHHHHHHHHHhhchh
Q 008797 43 TSLKAKQLAAQLIPRFFK-FFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD--TPEYLSKIVDILVQLLAAEEI 119 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk-~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~--~~e~~~riaDVL~QLLqsdd~ 119 (553)
.+=.+--.+|..+..+.+ ..|+. ++..+..++.|++..||..|+-++...|+- -+....++..+|..|+.+++.
T Consensus 116 ~~WrVre~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~ 192 (240)
T 3l9t_A 116 NNWRVQEVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSE 192 (240)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCH
T ss_pred CCccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHH
Confidence 455677788889999996 89984 777888999999999999999998777753 112345678888888888888
Q ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHhhc
Q 008797 120 VERDAVHKALMSLLRQDVKASLTALFKHIG 149 (553)
Q Consensus 120 ~E~~~v~~aL~sllk~D~k~tL~~lf~qI~ 149 (553)
-.+.+|=|+|..+-|.||.-+..-+=.|..
T Consensus 193 yVrKSVan~LrD~SK~~Pd~V~~~~~~w~~ 222 (240)
T 3l9t_A 193 YVRKSVGNALRDISKKFPDLVKIELKNWKL 222 (240)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHhhc
Confidence 999999999999999999988777655543
No 58
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.46 Score=46.22 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=81.2
Q ss_pred hhhHHHHHHH----h--cCCHHHHHHHhhhhhHHhccC-----C-CcchHHHHHhhhhhcccchhHHHHHhhcccccccc
Q 008797 31 VKDYEGIIEA----A--KTSLKAKQLAAQLIPRFFKFF-----P-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD 98 (553)
Q Consensus 31 ~~~y~~Il~~----~--kgs~k~K~LAaqfI~kffk~F-----P-~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~ 98 (553)
..+|..++++ . +.+..+-..|++.|..+.+.+ . .....-+-++++...|-...||-.|...|-.||..
T Consensus 55 ~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 55 SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4455555554 3 366777888888887776655 3 44466788999999998889999998888888886
Q ss_pred Cc-----chhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccch
Q 008797 99 TP-----EYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDV 137 (553)
Q Consensus 99 ~~-----e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~ 137 (553)
.+ -|+..+.+.|...|++..+..+..+-+.|..++...+
T Consensus 135 ~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 52 2467888888899998888888888888888887654
No 59
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.77 Score=44.63 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=92.6
Q ss_pred hhHHHHHHHhcCCHHHHHHHhhhhhH-HhccCCCcc------hHHHHHhhhhh-cccchhHHHHHhhccccccccCc--c
Q 008797 32 KDYEGIIEAAKTSLKAKQLAAQLIPR-FFKFFPDLS------SRAVDAHLDLI-EEEELGVRVQAIRGLPLFCKDTP--E 101 (553)
Q Consensus 32 ~~y~~Il~~~kgs~k~K~LAaqfI~k-ffk~FP~L~------e~Ai~a~lDLc-EDed~~IR~~aik~Lp~lck~~~--e 101 (553)
++|..-|. ...-++++=|..-|.. +...-|++. .+.++++.... .|.+..||..|++.|-.+|++-. +
T Consensus 19 ~~f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 19 KDFQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp TTHHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hhHHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 35555542 2455555556666666 654444433 46788888888 79999999999999999997553 2
Q ss_pred ----hhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccc--------hHHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 102 ----YLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQD--------VKASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 102 ----~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D--------~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
|+..+.-.|...|..-.+..++++..+|..++..- ....+..|+..+. +..-.+|+.++.||.
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~-----~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK-----HKTPQIRMECTQLFN 171 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT-----CSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc-----CCChHHHHHHHHHHH
Confidence 33333333444444444678899999999999843 3456677777665 445689999999998
Q ss_pred hhcccc
Q 008797 170 DKVFPL 175 (553)
Q Consensus 170 ~kl~~l 175 (553)
.-+...
T Consensus 172 ~~~~~~ 177 (249)
T 2qk1_A 172 ASMKEE 177 (249)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 766543
No 60
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.31 E-value=3.5 Score=46.82 Aligned_cols=89 Identities=15% Similarity=0.205 Sum_probs=54.6
Q ss_pred CHHHHHHHhhhhhHHhccC---CCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchh----hhHHHHHHHHHhh
Q 008797 44 SLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL----SKIVDILVQLLAA 116 (553)
Q Consensus 44 s~k~K~LAaqfI~kffk~F---P~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~----~riaDVL~QLLqs 116 (553)
++.++.=|...|.+|...| |+.-...++.++... | +.|+..|...|-.||++-++.+ +.+.+.|.++++.
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~ 595 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNT 595 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcC
Confidence 6667777777777665543 456666777777666 3 6677777777777776654433 3344444555554
Q ss_pred --chhHHHHHHHHHHHHHHcc
Q 008797 117 --EEIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 117 --dd~~E~~~v~~aL~sllk~ 135 (553)
-+..+...+-.++..++..
T Consensus 596 ~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 596 GRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp TTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHh
Confidence 2346666777777766653
No 61
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.19 E-value=2.7 Score=47.98 Aligned_cols=147 Identities=8% Similarity=0.079 Sum_probs=91.4
Q ss_pred CHHHHHHHhhhhhHHhccCC-CcchHHHHHhhhhhcccchhHHHHHhhcccccccc-----------Cc----chhhhHH
Q 008797 44 SLKAKQLAAQLIPRFFKFFP-DLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD-----------TP----EYLSKIV 107 (553)
Q Consensus 44 s~k~K~LAaqfI~kffk~FP-~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~-----------~~----e~~~ria 107 (553)
++..+.=|+-+|.+|-..|+ +.-...+.+++....|++..||..|..+|-.||.. .+ .|+..+.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll 550 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILL 550 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHH
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHH
Confidence 78899999999999998876 45667788888888898899999999999999873 12 3456666
Q ss_pred HHHHHHHhhc-----hhHHHHHHHHHHHHHHccc---hH-------HHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhc
Q 008797 108 DILVQLLAAE-----EIVERDAVHKALMSLLRQD---VK-------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKV 172 (553)
Q Consensus 108 DVL~QLLqsd-----d~~E~~~v~~aL~sllk~D---~k-------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl 172 (553)
..|.++|+.. ...|...+-.+|.+++..- .. ..|..++.++.. + .++...+..++.-|..=+
T Consensus 551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~--~-~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK--N-PSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT--S-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh--C-CCCcHHHHHHHHHHHHHH
Confidence 6667777764 1225567777777765531 11 122333333321 1 223345555555444322
Q ss_pred ccchhhhcCChHHHHHHHHHHHHH
Q 008797 173 FPLKAELLKPQEEMERHITDLIKK 196 (553)
Q Consensus 173 ~~l~~e~l~~~eE~E~~i~~~ikK 196 (553)
....++. ....+..+...+..
T Consensus 628 ~~~~~~~---~~~~~~~~~p~~~~ 648 (960)
T 1wa5_C 628 NYTQRQN---LPLLVDSMMPTFLT 648 (960)
T ss_dssp HTSCGGG---HHHHHHHHHHHHHH
T ss_pred hcCCcch---HHHHHHHHHHHHHH
Confidence 2222222 23456677777777
No 62
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.14 E-value=5.2 Score=45.14 Aligned_cols=125 Identities=15% Similarity=0.161 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHH----hcCCHHHHHHHhhhhhHHhccC---CCcchHHHHHhhhhhcccc
Q 008797 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEA----AKTSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLDLIEEEE 81 (553)
Q Consensus 9 ~~ie~LY~~~~~L~~akdk~~~~~~y~~Il~~----~kgs~k~K~LAaqfI~kffk~F---P~L~e~Ai~a~lDLcEDed 81 (553)
..+|-.+-..+.+++.-+.... .-...++.. ..+++..+.=+..+|.+|...+ |+.-...++.++....|
T Consensus 464 ~~~eaal~al~~i~~~~~~~~~-~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~-- 540 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVNYS-DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN-- 540 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSSCC-SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhhcCchhh-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--
Confidence 4455555555555555433110 111223332 2257788888888888876543 45556677777776654
Q ss_pred hhHHHHHhhccccccccCcch----hhhHHHHHHHHHhhc--hhHHHHHHHHHHHHHHccc
Q 008797 82 LGVRVQAIRGLPLFCKDTPEY----LSKIVDILVQLLAAE--EIVERDAVHKALMSLLRQD 136 (553)
Q Consensus 82 ~~IR~~aik~Lp~lck~~~e~----~~riaDVL~QLLqsd--d~~E~~~v~~aL~sllk~D 136 (553)
+.||..|...|-.||++-++. ++.+.+.|.++++.. +..+...+-.|+..++..-
T Consensus 541 ~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 541 PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 789999999999999876654 455556666777752 4578888889998888643
No 63
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=91.74 E-value=5.7 Score=46.28 Aligned_cols=282 Identities=15% Similarity=0.194 Sum_probs=131.5
Q ss_pred HHHHhhhhhhcccc-ccChhhH------------HHHHHHhc-C-CHHHHHHHhhhh---hHHhccCCCcch--------
Q 008797 14 LYEFGERLNEAKDK-SQNVKDY------------EGIIEAAK-T-SLKAKQLAAQLI---PRFFKFFPDLSS-------- 67 (553)
Q Consensus 14 LY~~~~~L~~akdk-~~~~~~y------------~~Il~~~k-g-s~k~K~LAaqfI---~kffk~FP~L~e-------- 67 (553)
||+.-|.|-.+-.. .+....| ...+...+ + .... .+.+.| ..+.|-|++...
T Consensus 619 L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~--~i~~~i~al~~lakgf~~~~~~~~p~~~~ 696 (980)
T 3ibv_A 619 LFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENII--SVYCSLMAIGNFAKGFPARGSEEVAWLAS 696 (980)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHH--HHHHHHHHHHHHHHTSCSCC-CCCSHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHH--HHHHHHHHHHHHhccCCcccCCCCcHHHH
Confidence 89999999877543 2222222 22222233 2 2222 222333 666667766432
Q ss_pred --HHHHHhhhhhc--ccchhHHHHHhhc----cccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHH
Q 008797 68 --RAVDAHLDLIE--EEELGVRVQAIRG----LPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA 139 (553)
Q Consensus 68 --~Ai~a~lDLcE--Ded~~IR~~aik~----Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~ 139 (553)
+++.+++..++ -.+..||=.+.+. ++.+-.+--.+++++++.|++-+...+-.+.--.-+-|+.-|+.+-..
T Consensus 697 f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~~~ 776 (980)
T 3ibv_A 697 FNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNMME 776 (980)
T ss_dssp HHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTSHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777 5566777555443 344444444567888888777667777788888888888888888766
Q ss_pred HHHHHHHhhccC------CCCCChHHHH------HHHHHHHHhhccc-chhhhcCChHH----HHHHHHHHHHHHhhhcc
Q 008797 140 SLTALFKHIGSV------DEPSTDEFIR------EKVLSFIRDKVFP-LKAELLKPQEE----MERHITDLIKKVLQSLE 202 (553)
Q Consensus 140 tL~~lf~qI~~~------~e~~~eE~vR------Er~lkFl~~kl~~-l~~e~l~~~eE----~E~~i~~~ikK~~~vL~ 202 (553)
.|..+|.-+... .++.++|..| +--+.||..-+.. +.+-++ ++. .+..+..++.-+.+ +.
T Consensus 777 ~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~--s~~n~~~l~~~l~~l~~~a~~-~~ 853 (980)
T 3ibv_A 777 ITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILF--TEENQVYFDPLINSILHFANL-VG 853 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGG--SHHHHTTHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhc--CCcchHHHHHHHHHHHHHhcc-CC
Confidence 666555543321 2233334444 4446677765543 333333 222 23333333322222 23
Q ss_pred cccHHHHHHHHHHHhhc-cccCCCC-chhHHHHHHHHHHHh---hhccccCCCCChHHHHHHHHHHHHhhhhhccCCchh
Q 008797 203 DVTGAEFRMFMDFLKSL-SLFGEKA-PTERMKELIGIIEGQ---ADLDAQFNVSDADHIDRLISCLYMALPFFLRGASGS 277 (553)
Q Consensus 203 dVT~eEF~l~m~lL~sl-~~~~~~s-~~gr~qeLv~~i~eq---a~Ld~~f~~sd~d~idrli~cl~~Alp~fs~~v~st 277 (553)
|.+.. .+-+.+|..+ ..++... .+|=.+=+++ +.-- +=++..||..|..+.==+-++...-.-++.+. +.
T Consensus 854 d~~~~--K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~--g~ 928 (980)
T 3ibv_A 854 EPATQ--KSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKL--GD 928 (980)
T ss_dssp -CHHH--HHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHH--HH
T ss_pred ChHHH--HHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhc--CH
Confidence 44433 2222232221 2222111 1221122444 3222 23778899999875522222222212222222 46
Q ss_pred hHHHHHHhhhccCCCCCChhhhhhHHHHH
Q 008797 278 KFLNYLNKHIIPVFDKLPEERKLDLLKAL 306 (553)
Q Consensus 278 ~f~~y~~~~IlP~l~~l~~~~kl~lLK~l 306 (553)
+|++|+-+..+|.++ +|++.-.++.+.|
T Consensus 929 ~~~~~l~~~~lp~~~-~~~~~~~~~~~~l 956 (980)
T 3ibv_A 929 IYKSYLVTVYFPTVN-FPDVMASEYLQAL 956 (980)
T ss_dssp HHHHHHHHTTTTC-----CCHHHHHHHC-
T ss_pred HHHHHHHHhcCCcCC-CCHHHHHHHHHHH
Confidence 899999999999886 6666555665555
No 64
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=91.70 E-value=5.1 Score=46.27 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=66.7
Q ss_pred HHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch------------hhhHHHHHHHHHhhchhHHHHH
Q 008797 57 RFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY------------LSKIVDILVQLLAAEEIVERDA 124 (553)
Q Consensus 57 kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~------------~~riaDVL~QLLqsdd~~E~~~ 124 (553)
+||+.-|+.-...++.+++...|.++.||..|...|-.||.+.+.+ +..+.+.|.+++..-+..+...
T Consensus 529 ~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~ 608 (1049)
T 3m1i_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566667888889999999999989999999999999999875533 4455555666677666677788
Q ss_pred HHHHHHHHHccch-HHHHHHHHHhh
Q 008797 125 VHKALMSLLRQDV-KASLTALFKHI 148 (553)
Q Consensus 125 v~~aL~sllk~D~-k~tL~~lf~qI 148 (553)
+-.|+..++..-+ .......+..+
T Consensus 609 ~~eai~~ii~~~~~~~~~~~~~~~l 633 (1049)
T 3m1i_C 609 FYKACGIIISEERSVAERNRLLSDL 633 (1049)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8888888876654 23333333433
No 65
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.84 E-value=1.7 Score=45.89 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=101.0
Q ss_pred chHHHHHHHHHhhhhhhccccccChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHH
Q 008797 7 EAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVR 85 (553)
Q Consensus 7 ~~~~ie~LY~~~~~L~~akdk~~~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR 85 (553)
+++-|+.|.+..+.+-. +|.+--.+-|..||.... .+...++..+.||..=|+.-+++...+++++..|++|+|+.|-
T Consensus 39 ~~~Kl~~L~q~~EL~l~-~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 39 NDSKITVLKQVQELIIN-KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp STHHHHHHHHHHHHHHT-TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred hHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 35678888888885433 455556778899998766 7899999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCcchhhhHHHHHHHHHhhchh-HHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHH
Q 008797 86 VQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI-VERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKV 164 (553)
Q Consensus 86 ~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~-~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~ 164 (553)
+.+|-..-.+.+ +..|.+..... .+..--.+..++-+|. .+++.+. ++.+.+|-.+
T Consensus 118 K~~I~~~tslYp-----------l~f~~i~~~~~~~~~~e~~W~~m~~lK~-------~Il~~~d-----s~n~GVrl~a 174 (386)
T 3o2t_A 118 KKAILTMTQLYK-----------VALQWMVKSRVISELQEACWDMVSAMAG-------DIILLLD-----SDNDGIRTHA 174 (386)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHHC-CCCHHHHHHHHHHHHHHH-------HHHHGGG-----CSSHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHhcCCCcchhHHHHHHHHHHHHH-------HHHHHhc-----cCCcchHHHH
Confidence 999887665543 23333333222 2222233444455544 3445444 5678899999
Q ss_pred HHHHH
Q 008797 165 LSFIR 169 (553)
Q Consensus 165 lkFl~ 169 (553)
+||+.
T Consensus 175 iKFle 179 (386)
T 3o2t_A 175 IKFVE 179 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99976
No 66
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=89.61 E-value=19 Score=38.16 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhhhccCCch-hhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCC
Q 008797 257 DRLISCLYMALPFFLRGASG-SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPL 335 (553)
Q Consensus 257 drli~cl~~Alp~fs~~v~s-t~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~ 335 (553)
.++..|+.+ |+.+..+. ...+.|+. +..|+ .....++-+|..+.++...+.+.+-..+..++|..|-..+-+
T Consensus 232 ~qL~ycv~q---f~eKDp~L~~~vi~~LL-k~WP~---tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S 304 (403)
T 3fga_B 232 PQLAYCVVQ---FLEKDSTLTEPVVMALL-KYWPK---THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS 304 (403)
T ss_dssp HHHHHHHHH---HHHHCGGGHHHHHHHHH-HTCCS---SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH---HHHhCchhHHHHHHHHH-HhCCC---CCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCC
Confidence 455555555 33333332 33444443 44554 335678889999999999999999888999999999999954
Q ss_pred CCCCCCccchHHHHHHHHHH
Q 008797 336 RKTGGEEMNFTYVECLLYTF 355 (553)
Q Consensus 336 ~~~~~~~l~fs~vEcLL~af 355 (553)
.+|...|.-||.+
T Consensus 305 -------~hfqVAErAL~~w 317 (403)
T 3fga_B 305 -------PHFQVAERALYYW 317 (403)
T ss_dssp -------SCHHHHHHHHGGG
T ss_pred -------CCHHHHHHHHHHh
Confidence 5788888877765
No 67
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=89.49 E-value=0.79 Score=48.07 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=82.2
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-----HHHHHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQ 112 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ri-----aDVL~Q 112 (553)
+++..+.-|+..|.+.-.+-|... .-+|..++.|...+++.++..|...|-.++.+++++-..| ...|++
T Consensus 14 ~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~ 93 (457)
T 1xm9_A 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVS 93 (457)
T ss_dssp SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence 678889999999999877666655 4567889999999999999999999999999888886666 568999
Q ss_pred HHh-hchhHHHHHHHHHHHHHHccc-hH-----HHHHHHHHhh
Q 008797 113 LLA-AEEIVERDAVHKALMSLLRQD-VK-----ASLTALFKHI 148 (553)
Q Consensus 113 LLq-sdd~~E~~~v~~aL~sllk~D-~k-----~tL~~lf~qI 148 (553)
+|. +.++.....+-.+|..|-..+ .+ +.+..|...+
T Consensus 94 lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 94 LLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred HHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 999 777777777777776665431 12 4555555555
No 68
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=88.89 E-value=18 Score=38.86 Aligned_cols=189 Identities=20% Similarity=0.282 Sum_probs=104.9
Q ss_pred chhhh-HHHHHHHHHhhchhHHHHHHHHHHHHHHcc--chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchh
Q 008797 101 EYLSK-IVDILVQLLAAEEIVERDAVHKALMSLLRQ--DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKA 177 (553)
Q Consensus 101 e~~~r-iaDVL~QLLqsdd~~E~~~v~~aL~sllk~--D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~ 177 (553)
.|+.. .+==|+.++.|+|+.|++.++..|..++.- +=+..+..-++.+ .+.|+.+--..
T Consensus 157 ~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni---------------f~~fi~e~e~~--- 218 (449)
T 2npp_B 157 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI---------------FYRFIYETEHH--- 218 (449)
T ss_dssp GTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH---------------HHHHHHTCSCC---
T ss_pred hhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhcccCCC---
Confidence 44444 444567799999999999999988888763 4343333332222 34555431111
Q ss_pred hhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHH-HHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHH
Q 008797 178 ELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMF-MDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHI 256 (553)
Q Consensus 178 e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~-m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~i 256 (553)
.--.|.-+.+-.-|.. ..---.+|...| +.+| +|+...+.-. .+-
T Consensus 219 ---nGIaeLLeilgSIinG----fa~PLKeehk~fl~~vL--lPLhk~~~l~-------------------------~y~ 264 (449)
T 2npp_B 219 ---NGIAELLEILGSIING----FALPLKEEHKIFLLKVL--LPLHKVKSLS-------------------------VYH 264 (449)
T ss_dssp ---SCHHHHHHHHHHHHSS----CCSSCCHHHHHHHHHTT--GGGGGSSCGG-------------------------GTH
T ss_pred ---CCHHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHH--HHHHccchhH-------------------------HhH
Confidence 0111221211111111 111112344433 4444 3444322211 112
Q ss_pred HHHHHHHHHhhhhhccCCch-hhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCC
Q 008797 257 DRLISCLYMALPFFLRGASG-SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPL 335 (553)
Q Consensus 257 drli~cl~~Alp~fs~~v~s-t~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~ 335 (553)
.++..|+.+-+ .+.... ...+.++. +..|+ .....++-+|.-+.++...+.+.+-..+..++|..|-..+-+
T Consensus 265 ~qL~ycv~qf~---eKDp~L~~~vi~~LL-k~WP~---tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S 337 (449)
T 2npp_B 265 PQLAYCVVQFL---EKDSTLTEPVVMALL-KYWPK---THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS 337 (449)
T ss_dssp HHHHHHHHHHH---HHCGGGHHHHHHHHH-HTCCS---SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH---hcCcHhHHHHHHHHH-HhCCC---CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC
Confidence 34555555533 222222 23333333 44443 335678889999999999999999888999999999999954
Q ss_pred CCCCCCccchHHHHHHHHHH
Q 008797 336 RKTGGEEMNFTYVECLLYTF 355 (553)
Q Consensus 336 ~~~~~~~l~fs~vEcLL~af 355 (553)
.+|...|..||.+
T Consensus 338 -------~hfqVAErAL~~w 350 (449)
T 2npp_B 338 -------PHFQVAERALYYW 350 (449)
T ss_dssp -------SCHHHHHHHHGGG
T ss_pred -------CCHHHHHHHHHHH
Confidence 6788888877754
No 69
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.82 E-value=1.4 Score=50.53 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=69.9
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccccCcchh---------hh---HHHHHHHHHhhchhHHHHHHHHHHHHHHcc
Q 008797 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL---------SK---IVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~---------~r---iaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (553)
.|+.++.+|+.++...||+.|..-|-.++. +|+-+ ++ ..++|++|+.++|...+.++-.+|..+-..
T Consensus 606 ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 606 VYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 578888999999889999999888888886 44432 12 256999999999999999999999988766
Q ss_pred chHH------------HHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 136 DVKA------------SLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 136 D~k~------------tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
+|.. .|-++|..+ .+++.+|.|.+.++..
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~------~~~~~l~~R~~~~l~N 725 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQ------IDDIELRQRLLMLFFG 725 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHT------TTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccccHHHHHHHHhcc------CCCHHHHHHHHHHHHH
Confidence 6542 233333322 2566777777776664
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=88.60 E-value=1.6 Score=45.31 Aligned_cols=101 Identities=11% Similarity=0.054 Sum_probs=80.1
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (553)
.+...|||.=-.|--|.+. |+..=-|+|++..=|.|.++-||--|||.|..|+-. +.+.-+..-+-|.|++.+|-.+
T Consensus 80 ~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVR 156 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVS 156 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHH
Confidence 5677899888888777776 777778889998888888899999999999988864 7888899999999999999888
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHh
Q 008797 123 DAVHKALMSLLRQDVKASLTALFKH 147 (553)
Q Consensus 123 ~~v~~aL~sllk~D~k~tL~~lf~q 147 (553)
..+==+..-|+..+|..+ ..+++.
T Consensus 157 k~A~l~~~kL~~~~pe~v-~~~~~~ 180 (355)
T 3tjz_B 157 SSALVSSLHLLKCSFDVV-KRWVNE 180 (355)
T ss_dssp HHHHHHHHHHTTTCHHHH-HTTHHH
T ss_pred HHHHHHHHHHhccCHHHH-HHHHHH
Confidence 777666667777776633 344443
No 71
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=88.35 E-value=13 Score=39.29 Aligned_cols=189 Identities=20% Similarity=0.279 Sum_probs=106.1
Q ss_pred chhhh-HHHHHHHHHhhchhHHHHHHHHHHHHHHc--cchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchh
Q 008797 101 EYLSK-IVDILVQLLAAEEIVERDAVHKALMSLLR--QDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKA 177 (553)
Q Consensus 101 e~~~r-iaDVL~QLLqsdd~~E~~~v~~aL~sllk--~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~ 177 (553)
.|+.. .+==|..++.|+|+.|++.++..|..++. ++-+..+...++.+ .+.|+.+--..
T Consensus 169 ~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni---------------f~~fiye~e~~--- 230 (392)
T 2jak_A 169 KYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI---------------FYRFIYETEHH--- 230 (392)
T ss_dssp TTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH---------------HHHHHTSSCCC---
T ss_pred hhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhhccCCC---
Confidence 34433 44457779999999999999998888876 34443333333322 34455431111
Q ss_pred hhcCChHHHHHHHHHHHHHHhhhcccccHHHHHHH-HHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHH
Q 008797 178 ELLKPQEEMERHITDLIKKVLQSLEDVTGAEFRMF-MDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHI 256 (553)
Q Consensus 178 e~l~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~-m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~i 256 (553)
.--.|.-+.+-.-|.. ..--=.+|...| +.+| +|+.+.+.-.- +-
T Consensus 231 ---~GIaeLLeilgsIIng----fa~PLKeehk~Fl~~vL--lPLhk~~~l~~-------------------------y~ 276 (392)
T 2jak_A 231 ---NGIAELLEILGSIING----FALPLKEEHKIFLLKVL--LPLHKVKSLSV-------------------------YH 276 (392)
T ss_dssp ---SCHHHHHHHHHHHHHT----CCSSCCHHHHHHHHHTT--GGGGTSGGGGG-------------------------TH
T ss_pred ---CCHHHHHHHHHHHHhc----cCCCCcHHHHHHHHHHh--HhhccCCcHHH-------------------------hH
Confidence 1111222222222222 111113455543 5554 35543222110 11
Q ss_pred HHHHHHHHHhhhhhccCCch-hhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCC
Q 008797 257 DRLISCLYMALPFFLRGASG-SKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPL 335 (553)
Q Consensus 257 drli~cl~~Alp~fs~~v~s-t~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~ 335 (553)
.++..|+.+-+ .+..+. ...+.++. +..|+ ....+++-+|..+.++...+.+.+-.++..++|..|...+-+
T Consensus 277 ~qL~ycv~qf~---eKDp~L~~~vi~~LL-k~WP~---tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S 349 (392)
T 2jak_A 277 PQLAYCVVQFL---EKDSTLTEPVVMALL-KYWPK---THSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS 349 (392)
T ss_dssp HHHHHHHHHHH---HHCGGGHHHHHHHHH-HSSCS---SCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH---hcCchhHHHHHHHHH-HhCCC---CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC
Confidence 34445554432 222222 23333333 44554 334677888999999999999999888999999999999954
Q ss_pred CCCCCCccchHHHHHHHHHH
Q 008797 336 RKTGGEEMNFTYVECLLYTF 355 (553)
Q Consensus 336 ~~~~~~~l~fs~vEcLL~af 355 (553)
-+|...|..||.+
T Consensus 350 -------~hfqVAErAL~~w 362 (392)
T 2jak_A 350 -------PHFQVAERALYYW 362 (392)
T ss_dssp -------SSHHHHHHHHGGG
T ss_pred -------CcHHHHHHHHHHh
Confidence 6788999888765
No 72
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=87.95 E-value=46 Score=38.72 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=55.8
Q ss_pred cCCHHHHHHHhhhhhHHhccC---CCcchHHHHHhhh--hhcccchhHHHHHhhccccccccCcchhhh
Q 008797 42 KTSLKAKQLAAQLIPRFFKFF---PDLSSRAVDAHLD--LIEEEELGVRVQAIRGLPLFCKDTPEYLSK 105 (553)
Q Consensus 42 kgs~k~K~LAaqfI~kffk~F---P~L~e~Ai~a~lD--LcEDed~~IR~~aik~Lp~lck~~~e~~~r 105 (553)
..++.+...+.-.|.||.+.| |++-..+++.+++ -..+.+..||..|-..+-.||++.+.++.-
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~ 574 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN 574 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh
Confidence 477899999999999977766 7888899999999 888899999999999999999998877644
No 73
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.92 E-value=27 Score=39.71 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=51.3
Q ss_pred HHHHhc-CCHHHHHHHhhhhhHHhcc-CCCcchHHHHHhhhhhcccchhHHHHHhhccccccccC
Q 008797 37 IIEAAK-TSLKAKQLAAQLIPRFFKF-FPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDT 99 (553)
Q Consensus 37 Il~~~k-gs~k~K~LAaqfI~kffk~-FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~ 99 (553)
||.+.. .+...+.-+|+.|...+++ ||+-=.+.+..++.++...|...+..|+.-|..+|+..
T Consensus 90 ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 90 IVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 344333 4577888889999998875 88666788999999999999899999999999999854
No 74
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.38 E-value=28 Score=40.81 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhh-------hhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhccc
Q 008797 8 AKQIEKLYEFGE-------RLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEE 80 (553)
Q Consensus 8 ~~~ie~LY~~~~-------~L~~akdk~~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDe 80 (553)
.+.|+++|+.+. .+-||=-.+...+.++.|++..+...-...-|+|.+.- .-+.+.-..+.++.+.+||+.+
T Consensus 325 ~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~~~l~~-~~~~~~Pt~e~l~~~~~l~~~~ 403 (1056)
T 1lsh_A 325 AGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVAS-TLSNQQATRESLSYARELLNTS 403 (1056)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHH-hhccCCCCHHHHHHHHHHHhCc
Confidence 345666666542 22333333345556666666555221111226676663 3355666789999999999986
Q ss_pred c----hhHHHHHhhcccc----cccc----CcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHHhh
Q 008797 81 E----LGVRVQAIRGLPL----FCKD----TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFKHI 148 (553)
Q Consensus 81 d----~~IR~~aik~Lp~----lck~----~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~qI 148 (553)
. +.+|..|+=++-. .|.+ .++++..+++.|.+.+...+..|..+.=+||-.+=+-. ++..|...|
T Consensus 404 ~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~---~l~~l~~~l 480 (1056)
T 1lsh_A 404 FIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPN---SIKKIQRFL 480 (1056)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG---GHHHHHTTS
T ss_pred ccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChh---HHHHHHHhh
Confidence 5 4467766655532 3444 34779999999999999988888888888887776643 455444433
No 75
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=87.06 E-value=16 Score=41.87 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=88.7
Q ss_pred HHHHHHHhc-CCHHHHHHHhhhhhHHhcc------CCC-cchHHHHHhhhhhccc-chhHHHHHhhccccccccCcchhh
Q 008797 34 YEGIIEAAK-TSLKAKQLAAQLIPRFFKF------FPD-LSSRAVDAHLDLIEEE-ELGVRVQAIRGLPLFCKDTPEYLS 104 (553)
Q Consensus 34 y~~Il~~~k-gs~k~K~LAaqfI~kffk~------FP~-L~e~Ai~a~lDLcEDe-d~~IR~~aik~Lp~lck~~~e~~~ 104 (553)
..-++...+ |++..|+.||+-|.+.-.. |+. ....|+-.+++|+..+ +...+..|..+|-.++..+++...
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 444555454 8899999999999886543 332 1245889999999855 334467899999999998777655
Q ss_pred h-----HHHHHHHHHhhchhHHHHHHHHHHHHHHccch--------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 105 K-----IVDILVQLLAAEEIVERDAVHKALMSLLRQDV--------KASLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 105 r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~--------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
+ ..+.|.+||.++++.....+-.+|..|...+. .+.+..|..-+. ++++.+|+.+...|+
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~-----s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE-----DEDEETATACAGALA 690 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG-----CSSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc-----CCCHHHHHHHHHHHH
Confidence 4 45689999999888888887777777765422 233443433343 455667765554443
No 76
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=81.99 E-value=16 Score=41.31 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHHHHhhhhhccCC
Q 008797 251 SDADHIDRLISCLYMALPFFLRGA 274 (553)
Q Consensus 251 sd~d~idrli~cl~~Alp~fs~~v 274 (553)
.++|.++-++.++...+.+.....
T Consensus 797 ~~pd~~~~~f~ll~~~l~~~p~~~ 820 (971)
T 2x1g_F 797 NISDTMETFFGCLTQIIKKIPQVL 820 (971)
T ss_dssp HTHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCchHHHHHHHHHHHHHHhCcHHH
Confidence 367888888888777775544333
No 77
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=81.33 E-value=2.5 Score=40.84 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=75.5
Q ss_pred HHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHH
Q 008797 45 LKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDA 124 (553)
Q Consensus 45 ~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~ 124 (553)
.-+=.+|..++.+|++..|+. +..-+.....|+++-+|..||-.+-..-++ ........++..++.+++.=...+
T Consensus 111 d~~D~~a~~~~g~~~~~~p~~---~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~--~d~~~~~~~i~~~~~d~~~yV~kA 185 (232)
T 3jxy_A 111 DSVDSIVPTFLGDIFLKHPEL---ISAYIPKWIASDNIWLQRAAILFQLKYKQK--MDEELLFWIIGQLHSSKEFFIQKA 185 (232)
T ss_dssp HHHHHHTTTHHHHHHHHCGGG---GGGTHHHHHHSSCHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHCHHH---HHHHHHHHhcCCchHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhcCCHHHHHHHH
Confidence 445667788889999998872 334577899999999999998776544332 223356667788888999999999
Q ss_pred HHHHHHHHHccchHHHHHHHHHh
Q 008797 125 VHKALMSLLRQDVKASLTALFKH 147 (553)
Q Consensus 125 v~~aL~sllk~D~k~tL~~lf~q 147 (553)
|-++|.++.+.+|..++.-|=.+
T Consensus 186 vgW~Lr~~~k~~p~~v~~fl~~~ 208 (232)
T 3jxy_A 186 IGWVLREYAKTNPDVVWEYVQNN 208 (232)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCHHHHHHHHHHC
Confidence 99999999999999887766444
No 78
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=81.14 E-value=5.1 Score=38.32 Aligned_cols=87 Identities=8% Similarity=0.004 Sum_probs=70.6
Q ss_pred hhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 008797 53 QLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSL 132 (553)
Q Consensus 53 qfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sl 132 (553)
..+.+|++..|+. ...-+...+.|++.-+|..||-.+-...+. .+...+-.++..++.+++-=..-+|-++|.++
T Consensus 112 ~~~~~~~~~~~~~---~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~--~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~ 186 (220)
T 2b6c_A 112 KFFGSWVALHLTE---LPTIFALFYGAENFWNRRVALNLQLMLKEK--TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQY 186 (220)
T ss_dssp HHHHHHHHHSGGG---HHHHHHHHTTCSSHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChHH---HHHHHHHHHcCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 4578888888764 344578899999999999999888666332 45567777888888889989999999999999
Q ss_pred HccchHHHHHHH
Q 008797 133 LRQDVKASLTAL 144 (553)
Q Consensus 133 lk~D~k~tL~~l 144 (553)
.+.||.-++.=|
T Consensus 187 ~k~~~~~v~~fl 198 (220)
T 2b6c_A 187 SKTNPQWVEELM 198 (220)
T ss_dssp TTTCHHHHHHHH
T ss_pred HhhCHHHHHHHH
Confidence 999999887777
No 79
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=79.94 E-value=83 Score=35.29 Aligned_cols=66 Identities=8% Similarity=0.117 Sum_probs=49.7
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccc---cCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCK---DTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck---~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (553)
...+..+..||++ .+.||..++.-|..+|. ++++|++.+...|.+.|+. +.....+-.+|..+...
T Consensus 489 ~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 489 PGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRE 557 (963)
T ss_dssp HHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHH
Confidence 4456666677774 66799988888887775 4678899999999888854 66677777888887753
No 80
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=79.67 E-value=17 Score=36.42 Aligned_cols=153 Identities=17% Similarity=0.203 Sum_probs=113.8
Q ss_pred HHHHHHHhhhhhhccccc---cChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCC---CcchHHHHHhhhhhcccchh
Q 008797 11 IEKLYEFGERLNEAKDKS---QNVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFP---DLSSRAVDAHLDLIEEEELG 83 (553)
Q Consensus 11 ie~LY~~~~~L~~akdk~---~~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP---~L~e~Ai~a~lDLcEDed~~ 83 (553)
+..||=..+.|..+.+.- .-++-+-.|+..++ .+.+...=|...|..-...=| +.=...++|+.|+..+.+.-
T Consensus 51 ~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~i 130 (265)
T 3b2a_A 51 LRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDM 130 (265)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCch
Confidence 677888888887775442 45556777777888 778888888888887777665 23356889999999999999
Q ss_pred HHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccc-----hHHHHHHHHHhhccCCCCCChH
Q 008797 84 VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQD-----VKASLTALFKHIGSVDEPSTDE 158 (553)
Q Consensus 84 IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D-----~k~tL~~lf~qI~~~~e~~~eE 158 (553)
+|..|.-.|-.+-.- ...++|.|+|.-|+.|.+..+-.+.=.+|.++-..- .+..+.++=.-+. ++|+
T Consensus 131 l~~eaae~Lgklkv~--~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~-----~eD~ 203 (265)
T 3b2a_A 131 MRIETIDVLSKLQPL--EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQ-----NDNE 203 (265)
T ss_dssp HHHHHHHHHHHCCBS--CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHT-----CSCH
T ss_pred HHHHHHHHhCcCCcc--cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHc-----CCCH
Confidence 999999998888322 347889999999999999988888888888777642 3444444433333 5577
Q ss_pred HHHHHHHHHHHh
Q 008797 159 FIREKVLSFIRD 170 (553)
Q Consensus 159 ~vREr~lkFl~~ 170 (553)
.++|++|.-+-.
T Consensus 204 ~l~e~aLd~Le~ 215 (265)
T 3b2a_A 204 FIVELALDVLEK 215 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889988875443
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=79.45 E-value=1.7 Score=44.62 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHccch
Q 008797 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDV 137 (553)
Q Consensus 69 Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~ 137 (553)
+|..++.|..+.+..|+..|...|..+|..+++....+ ...|++||.+.++.-+..+-.+|..|...+|
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 45566666667777777777777777776666654433 4667777777666666666666666665543
No 82
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=78.02 E-value=73 Score=34.74 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=82.6
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHHHH
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTALFK 146 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~lf~ 146 (553)
+++...+++...- +....+=|=.-||.+.|.-|++-.+..|.+.-|.-.||...+..+-+.|..+-+-+--.-+..++.
T Consensus 28 ~~~y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~ 106 (507)
T 3u0r_A 28 KDAYQVILDGVKG-GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILT 106 (507)
T ss_dssp HHHHHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHH
Confidence 3456667776665 366666777889999999999999999999999999999999999999999888777788889999
Q ss_pred hhccCCCCCChHHHHHHHHHHHHh
Q 008797 147 HIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 147 qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
|+...+++.+=+.|+.-++.+++.
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~ 130 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKM 130 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhc
Confidence 999655554444578777777664
No 83
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=77.17 E-value=7.3 Score=37.91 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=63.0
Q ss_pred HHHHHHhc-CCH--HHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhh-
Q 008797 35 EGIIEAAK-TSL--KAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSK- 105 (553)
Q Consensus 35 ~~Il~~~k-gs~--k~K~LAaqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~r- 105 (553)
..++.... +++ ..+.-|+..|..--...|+-. .-+|-.+++|...++..||.+|...|-.++.+++++-..
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34444444 444 566666666655444444332 246778888988899999999999999999887766433
Q ss_pred ----HHHHHHHHHhh-chhHHHHHHHHHHHH
Q 008797 106 ----IVDILVQLLAA-EEIVERDAVHKALMS 131 (553)
Q Consensus 106 ----iaDVL~QLLqs-dd~~E~~~v~~aL~s 131 (553)
....|++||.+ .+......+--+|-.
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~n 121 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWN 121 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 46679999974 455444444333333
No 84
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=74.51 E-value=53 Score=38.50 Aligned_cols=222 Identities=16% Similarity=0.214 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHhhchh---HHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchhhhc
Q 008797 104 SKIVDILVQLLAAEEI---VERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAELL 180 (553)
Q Consensus 104 ~riaDVL~QLLqsdd~---~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~l 180 (553)
..+.++|-+|...... .+....-.-|+++++.-+...|..++.++. . .+..|. ++.+-|...+
T Consensus 288 ~~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~lR~~~~e~L~~l~~~~~-----~-~~~~r~----~~lDal~~aG---- 353 (1056)
T 1lsh_A 288 SEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLH-----Q-QKDYRR----WILDAVPAMA---- 353 (1056)
T ss_dssp HHHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHTTSCHHHHHHHHHHHT-----T-SHHHHH----HHHHHHHHHC----
T ss_pred HHHHHHHHHHHhccccccCcchHHHHHHHHHHHhcCCHHHHHHHHHHHh-----c-cHHHHH----HHHHHhHhcC----
Confidence 4455566555543211 222223344778888888889999999986 2 233333 3444443333
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHH--
Q 008797 181 KPQEEMERHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDR-- 258 (553)
Q Consensus 181 ~~~eE~E~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idr-- 258 (553)
|.+.-.+|.+.|+. +++|..|+..++..+..+. .|. .++++.+.+.+.... ..+++ .+..
T Consensus 354 --T~~a~~~i~~~i~~-----~~l~~~ea~~~l~~~~~~~-----~Pt---~e~l~~~~~l~~~~~--~~~~~-~l~~ta 415 (1056)
T 1lsh_A 354 --TSEALLFLKRTLAS-----EQLTSAEATQIVASTLSNQ-----QAT---RESLSYARELLNTSF--IRNRP-ILRKTA 415 (1056)
T ss_dssp --SHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHTC-----CCC---HHHHHHHHHHHTCHH--HHTCH-HHHHHH
T ss_pred --CHHHHHHHHHHHHc-----CCCCHHHHHHHHHHhhccC-----CCC---HHHHHHHHHHHhCcc--cccCH-HHHHHH
Confidence 45666777777765 6899999854443333222 233 566666665433221 01112 1111
Q ss_pred HHHHHHHhhhhhccC-CchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHHHHHHHhcCCCC
Q 008797 259 LISCLYMALPFFLRG-ASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVAVLLKKYMPLRK 337 (553)
Q Consensus 259 li~cl~~Alp~fs~~-v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~~~L~~~mP~~~ 337 (553)
++....++-.++... .-..+.+.++.+.+...++.-+++.++=.||+|.-+-. |.....|..|+|...
T Consensus 416 ~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~ 484 (1056)
T 1lsh_A 416 VLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQG 484 (1056)
T ss_dssp HHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSS
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCcc
Confidence 222223333333221 11233344444444433343345667777888877633 334567888988532
Q ss_pred CCCCccchHHHHHHHHHHHHhhhcCchhhhh
Q 008797 338 TGGEEMNFTYVECLLYTFHHLAHKAPNATNS 368 (553)
Q Consensus 338 ~~~~~l~fs~vEcLL~afh~L~~k~P~~~~~ 368 (553)
....+.....-=+-+.||..++.+.|....+
T Consensus 485 ~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~ 515 (1056)
T 1lsh_A 485 KSLDEYSTRVQAEAIMALRNIAKRDPRKVQE 515 (1056)
T ss_dssp SCCCCSCHHHHHHHHHTTTTGGGTCHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHhhhhchHHHHH
Confidence 2122232232224477899999988865443
No 85
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=74.22 E-value=2.6 Score=44.99 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=53.2
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHccch
Q 008797 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQDV 137 (553)
Q Consensus 69 Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~D~ 137 (553)
+|..++.|..+.+..|+++|...|..+|..+++....+ ...|++||.+.++.....+-.+|..|+..+|
T Consensus 380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 45667788888888888888888888887777765544 5678888888887777888888888877655
No 86
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=74.14 E-value=1.2e+02 Score=34.09 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHccchHH----------HHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccc
Q 008797 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDVKA----------SLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPL 175 (553)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~----------tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l 175 (553)
.+-+|+.||++++.-.+-.+=+.|..|+...|.. .+..|.+-+. +.-|.+|..++-+|..
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~-----d~rE~iRneallLL~~----- 192 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA-----DSREVIRNDGVLLLQA----- 192 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG-----CSSHHHHHHHHHHHHH-----
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh-----CchHHHHHHHHHHHHH-----
Confidence 4556688999999988888889999999888773 4455555554 4458899988888763
Q ss_pred hhhhcCChHHHHHHH
Q 008797 176 KAELLKPQEEMERHI 190 (553)
Q Consensus 176 ~~e~l~~~eE~E~~i 190 (553)
+...+.+++..|
T Consensus 193 ---Lt~~n~~iQklV 204 (651)
T 3grl_A 193 ---LTRSNGAIQKIV 204 (651)
T ss_dssp ---HHTTCHHHHHHH
T ss_pred ---HhcCCHHHHHHH
Confidence 223355665555
No 87
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=73.68 E-value=9 Score=42.31 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=78.5
Q ss_pred ChhhHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcc-----hHHHHHhhhhhcccchhHHHHHhhcccccccc-Ccch
Q 008797 30 NVKDYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLS-----SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKD-TPEY 102 (553)
Q Consensus 30 ~~~~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~-----e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~-~~e~ 102 (553)
+...-..++.... +++..+.-||..|...-...++.. .-+|-.++.|....+..|+.+|...|-.||.. ++++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 3445666677666 889999999999988776666543 34788999999999999999999999999984 5555
Q ss_pred hhh-----HHHHHHHHHhhc-hhHHHHHHHHHHHHHHc
Q 008797 103 LSK-----IVDILVQLLAAE-EIVERDAVHKALMSLLR 134 (553)
Q Consensus 103 ~~r-----iaDVL~QLLqsd-d~~E~~~v~~aL~sllk 134 (553)
-.. .+..|++||.+. +......+..+|..|-.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 333 567899999984 44445666666666644
No 88
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=72.31 E-value=9.4 Score=39.84 Aligned_cols=96 Identities=10% Similarity=0.104 Sum_probs=64.6
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccccCcchh-----hhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchH--H---
Q 008797 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYL-----SKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK--A--- 139 (553)
Q Consensus 70 i~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~-----~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k--~--- 139 (553)
|..++.+...+|+.+|..|...|-.+|.++++.- ..+...|+++|.++++.....+-.+|..|...++. .
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5566777777888888888888888888775532 12567899999998888888888888888865222 2
Q ss_pred ---HHHHHHHhhccCCCCCChHHHHHHHHHHHH
Q 008797 140 ---SLTALFKHIGSVDEPSTDEFIREKVLSFIR 169 (553)
Q Consensus 140 ---tL~~lf~qI~~~~e~~~eE~vREr~lkFl~ 169 (553)
.+..|...+.. ++++.+++.+..-|.
T Consensus 84 ~~G~i~~Lv~lL~~----~~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 84 RQNGIREAVSLLRR----TGNAEIQKQLTGLLW 112 (457)
T ss_dssp HTTCHHHHHHHHTT----CCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhh----CCCHHHHHHHHHHHH
Confidence 23344444431 345567766655443
No 89
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=71.88 E-value=3.6 Score=47.23 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=65.4
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcc------hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHH------HHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLS------SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIV------DIL 110 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~------e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ria------DVL 110 (553)
+++..++-|+..|.....+ |+.+ ..++..++.|++.+|..||+.|...|..+|..+++.+..++ ..|
T Consensus 635 ~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~L 713 (810)
T 3now_A 635 DHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDIL 713 (810)
T ss_dssp CCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHH
Confidence 5566666666666554432 2221 24677888888888888998888888888876555544444 488
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHccch
Q 008797 111 VQLLAAEEIVERDAVHKALMSLLRQDV 137 (553)
Q Consensus 111 ~QLLqsdd~~E~~~v~~aL~sllk~D~ 137 (553)
++||.+++......+-.+|..+...++
T Consensus 714 v~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 714 HTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 888888888877777777777776543
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=71.58 E-value=19 Score=34.60 Aligned_cols=131 Identities=14% Similarity=0.220 Sum_probs=80.7
Q ss_pred CCHHHHHHHhhhhhHHhccCCC----------cchHHHHHhhhh-hcccchhHHHHHhhccccccccCcchhhhHHHHHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPD----------LSSRAVDAHLDL-IEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILV 111 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~----------L~e~Ai~a~lDL-cEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~ 111 (553)
....+-..|.+.+..|...+.. ....-+..+++= +-|....+|..|+..|-.+|... -....+.+.|.
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~ 145 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVI 145 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHG
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 4456666777777777665432 223445555553 46777888888888887776432 22456777777
Q ss_pred HHHhhchhHHHHHHHHHHHHHHcc------chHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccc
Q 008797 112 QLLAAEEIVERDAVHKALMSLLRQ------DVKASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPL 175 (553)
Q Consensus 112 QLLqsdd~~E~~~v~~aL~sllk~------D~k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l 175 (553)
..|..-.|.-+..+-..|..++.. +++..+..++..+..- -.+.+..||+-+++++.+=.+-+
T Consensus 146 ~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHh
Confidence 888888887777766666666653 5666665554433100 01456789998888877644333
No 91
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=71.25 E-value=11 Score=38.59 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=48.8
Q ss_pred HHHHHhhhhhc-----------ccchhHHHHHhhccccccccCcchhhh------HHHHHHHHHhhchhHHHHHHHHHHH
Q 008797 68 RAVDAHLDLIE-----------EEELGVRVQAIRGLPLFCKDTPEYLSK------IVDILVQLLAAEEIVERDAVHKALM 130 (553)
Q Consensus 68 ~Ai~a~lDLcE-----------Ded~~IR~~aik~Lp~lck~~~e~~~r------iaDVL~QLLqsdd~~E~~~v~~aL~ 130 (553)
-++.+++.|.. ...+.+|..|...|-.+|.++++.-.. +...|++||.++++.....+-.+|.
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~ 152 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 152 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 35666666653 234678999999999999887544222 2678999999988877777777777
Q ss_pred HHHc
Q 008797 131 SLLR 134 (553)
Q Consensus 131 sllk 134 (553)
.|-.
T Consensus 153 nLs~ 156 (354)
T 3nmw_A 153 NLSW 156 (354)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7755
No 92
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=69.94 E-value=11 Score=40.11 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=47.2
Q ss_pred HHHHhhhhhc-----------ccchhHHHHHhhccccccccCcchhh-----h-HHHHHHHHHhhchhHHHHHHHHHHHH
Q 008797 69 AVDAHLDLIE-----------EEELGVRVQAIRGLPLFCKDTPEYLS-----K-IVDILVQLLAAEEIVERDAVHKALMS 131 (553)
Q Consensus 69 Ai~a~lDLcE-----------Ded~~IR~~aik~Lp~lck~~~e~~~-----r-iaDVL~QLLqsdd~~E~~~v~~aL~s 131 (553)
++..++.|.. ..++.++..|...|-.+|.+++++-. . ....|++||.++++.....+-.+|..
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5666666653 23466899999999999988754422 2 36789999999888777777777766
Q ss_pred HHc
Q 008797 132 LLR 134 (553)
Q Consensus 132 llk 134 (553)
|-.
T Consensus 270 Ls~ 272 (458)
T 3nmz_A 270 LSW 272 (458)
T ss_dssp HTS
T ss_pred Hhc
Confidence 644
No 93
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=68.93 E-value=19 Score=37.35 Aligned_cols=114 Identities=10% Similarity=0.067 Sum_probs=71.2
Q ss_pred ccCCCcch-HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchH
Q 008797 60 KFFPDLSS-RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVK 138 (553)
Q Consensus 60 k~FP~L~e-~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k 138 (553)
.+||++.- ..+-.++.|+-..|..+|+=.|=.+-.+++...|-+ =++--|.+=|++.++-.+-.+=.+|..+..-+-.
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~ 137 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML 137 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH
Confidence 56776653 556667778888888888888777777777755544 6777777777777776666665666665555555
Q ss_pred HHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcccchhhh
Q 008797 139 ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVFPLKAEL 179 (553)
Q Consensus 139 ~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~~l~~e~ 179 (553)
..+..-+.+... +.+.-||..++=- ..||.+.-+++
T Consensus 138 ~~l~~~lk~~L~----d~~pyVRk~A~l~-~~kL~~~~pe~ 173 (355)
T 3tjz_B 138 QAIERYMKQAIV----DKVPSVSSSALVS-SLHLLKCSFDV 173 (355)
T ss_dssp HHHHHHHHHHHT----CSSHHHHHHHHHH-HHHHTTTCHHH
T ss_pred HHHHHHHHHHcC----CCCHHHHHHHHHH-HHHHhccCHHH
Confidence 555555565553 3334566554422 22555553333
No 94
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=68.04 E-value=2e+02 Score=34.07 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHhhhhhccCC-chhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCchhhhhhhHHHH---
Q 008797 251 SDADHIDRLISCLYMALPFFLRGA-SGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTPQDSRQILPSVA--- 326 (553)
Q Consensus 251 sd~d~idrli~cl~~Alp~fs~~v-~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~~~a~~~l~~i~--- 326 (553)
.+++.+...+.|+..-+.++.-+. .++.++++++-+.++ .++.+.-.+..|.|+..--. .+-.+.+..+|
T Consensus 219 ~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~-----~~~~r~aA~dcL~eIv~k~~-~~~~~~~~~lf~~~ 292 (1073)
T 3gjx_A 219 QNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN-----VPMFRNVSLKCLTEIAGVSV-SQYEEQFETLFTLT 292 (1073)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS-----SHHHHHHHHHHHHHHHHSCS-GGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC-----ChHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHH
Confidence 345666667777777666663322 235676766433332 23567777888888765311 22223444555
Q ss_pred -HHHHHhcCCCC
Q 008797 327 -VLLKKYMPLRK 337 (553)
Q Consensus 327 -~~L~~~mP~~~ 337 (553)
+.+..++|..+
T Consensus 293 ~~~i~~ilp~~~ 304 (1073)
T 3gjx_A 293 MMQLKQMLPLNT 304 (1073)
T ss_dssp HHHHHHHSCTTS
T ss_pred HHHHHHhcCCch
Confidence 44557788753
No 95
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=67.59 E-value=2 Score=42.19 Aligned_cols=56 Identities=30% Similarity=0.405 Sum_probs=42.2
Q ss_pred hhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHH
Q 008797 53 QLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKA 128 (553)
Q Consensus 53 qfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~a 128 (553)
.=|-+||..-|++ +-.|+.|+++.||.+|.+.|| .++|.+|++.+++..+..+=.+
T Consensus 42 ~ri~~~~~~~p~l-------~~~ll~d~~~~VR~~AA~~l~-------------~~~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 42 RQIDRFFRNNPHL-------AVQYLADPFWERRAIAVRYSP-------------VEALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp HHHHHHHHHCGGG-------GGGGTTCSSHHHHHHHHTTSC-------------GGGGGGGTTCSSHHHHHHHHTT
T ss_pred HHHHHHHcCCHHH-------HHHHhcCCCHHHHHHHHHhCC-------------HHHHHHHccCcCHHHHHHHHHH
Confidence 4477888888876 335678999999999999875 2347778888888877777655
No 96
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=66.80 E-value=16 Score=35.56 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=49.6
Q ss_pred HHHhhhhhcccch--hHHHHHhhccccccccCcchhhh-----HHHHHHHHHhhchhHHHHHHHHHHHHHHccc
Q 008797 70 VDAHLDLIEEEEL--GVRVQAIRGLPLFCKDTPEYLSK-----IVDILVQLLAAEEIVERDAVHKALMSLLRQD 136 (553)
Q Consensus 70 i~a~lDLcEDed~--~IR~~aik~Lp~lck~~~e~~~r-----iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D 136 (553)
|..+..+...+|+ +++..|...|-.+|..+++.... .+-.|+++|.++++.....+-.+|..|-.-+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 4455666666666 88888888999999877666444 4567999999988877777777777776543
No 97
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=64.72 E-value=1.1e+02 Score=29.94 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=73.5
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH-HHHHHHHHHHHccch---HHHHH
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER-DAVHKALMSLLRQDV---KASLT 142 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~-~~v~~aL~sllk~D~---k~tL~ 142 (553)
++-+++++-+.+|+==-||++||.-|..+.+.-|+.+.-..+=|.-||..++..-+ +.+-++|=++-+..| ++++-
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp 110 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP 110 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHH
Confidence 45688999999998878999999999999999999999999999989888888777 778888888888776 45566
Q ss_pred HHHHhhccCCCCCChHHHH
Q 008797 143 ALFKHIGSVDEPSTDEFIR 161 (553)
Q Consensus 143 ~lf~qI~~~~e~~~eE~vR 161 (553)
.+|-... -|++.+|
T Consensus 111 ~lfanyr-----igd~kik 124 (253)
T 2db0_A 111 VLFANYR-----IGDEKTK 124 (253)
T ss_dssp HHHHHSC-----CCSHHHH
T ss_pred HHHHHHh-----cCCccce
Confidence 6676665 4555544
No 98
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=64.68 E-value=36 Score=33.28 Aligned_cols=151 Identities=19% Similarity=0.296 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHhhccccCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHh-
Q 008797 188 RHITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFGEKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMA- 266 (553)
Q Consensus 188 ~~i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~A- 266 (553)
+.|...|+. +|-.+|.+-|..+..=+-.+.+- + ..+++.++++|.++|-.+..| .....++..++...
T Consensus 9 ~~l~r~v~g---iLNKLT~~nf~~i~~ql~~~~i~---~-~~~l~~vi~~if~kA~~ep~f----~~~YA~Lc~~L~~~~ 77 (260)
T 1hu3_A 9 QELFRKVRS---ILNKLTPQMFNQLMKQVSGLTVD---T-EERLKGVIDLVFEKAIDEPSF----SVAYANMCRCLVTLK 77 (260)
T ss_dssp HHHHHHHHH---HHTCSSCCCHHHHHHHHTTCCCC---S-HHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHH---HHhhCCHHHHHHHHHHHHHhcCC---C-HHHHHHHHHHHHHHHHcCchH----HHHHHHHHHHHHHhh
Confidence 334445566 66678888888776655444432 3 256788999999987766555 34567777777653
Q ss_pred hhhhccCCchhhHHHHHHhhhccCCC--------------CC-----Ch-----------------hhhhhHHHHHHHhC
Q 008797 267 LPFFLRGASGSKFLNYLNKHIIPVFD--------------KL-----PE-----------------ERKLDLLKALAEIS 310 (553)
Q Consensus 267 lp~fs~~v~st~f~~y~~~~IlP~l~--------------~l-----~~-----------------~~kl~lLK~lAe~s 310 (553)
+|.+........|-.++.+..--.|+ .+ |+ .+-+-..+.++|+-
T Consensus 78 ~p~~~~~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy 157 (260)
T 1hu3_A 78 VPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELF 157 (260)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHH
T ss_pred CCcccCCccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56553322344465555443321111 01 11 02357788888885
Q ss_pred CCCCchhhhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhc
Q 008797 311 PYTTPQDSRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK 361 (553)
Q Consensus 311 ~~~~~~~a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k 361 (553)
.+ ..-...+ +|+.|...+..|.. ..|||+.-.+...|+.
T Consensus 158 ~~--~~l~~~i---~~~~l~~Ll~~~~e-------~~iE~l~~lL~tvG~~ 196 (260)
T 1hu3_A 158 KL--KMLTEAI---MHDCVVKLLKNHDE-------ESLECLCRLLTTIGKD 196 (260)
T ss_dssp TT--TCSCHHH---HHHHHHHHHHSCSH-------HHHHHHHHHHHHHHHH
T ss_pred hc--CCCCHHH---HHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHH
Confidence 43 1112222 33434444433221 2799999999987765
No 99
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=63.63 E-value=1e+02 Score=29.33 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhhhc-cCCchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCCCCc
Q 008797 257 DRLISCLYMALPFFL-RGASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPYTTP 315 (553)
Q Consensus 257 drli~cl~~Alp~fs-~~v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~~~~ 315 (553)
--.+.++..++.-|. ..+....++..+++.+.+.|++-..+-|-.-.+++.++-.+.|+
T Consensus 157 ~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 157 AAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 334445555555553 34445677788887777778877767777888888888777764
No 100
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=62.35 E-value=7.7 Score=45.44 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=61.5
Q ss_pred chHHHHHhhhhhc-ccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHccchHHHHHHH
Q 008797 66 SSRAVDAHLDLIE-EEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLTAL 144 (553)
Q Consensus 66 ~e~Ai~a~lDLcE-Ded~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~k~tL~~l 144 (553)
...||..+|..|- |.+..||..|+-+|-.++-.+++.++|+.+. |+++.++..+-.+--||=-+---+|....-.+
T Consensus 575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~---L~~~~d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQL---LSKSHNAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT---GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 3466777777765 5556788888888888887788776665554 44577888787777777555444443333334
Q ss_pred HHhhccCCCCCChHHHHHHHHHHH
Q 008797 145 FKHIGSVDEPSTDEFIREKVLSFI 168 (553)
Q Consensus 145 f~qI~~~~e~~~eE~vREr~lkFl 168 (553)
++.+.. ..++.||.-++-=|
T Consensus 652 L~~L~~----D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 652 LDPLTK----DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHT----CSSHHHHHHHHHHH
T ss_pred HHHHcc----CCCHHHHHHHHHHH
Confidence 454442 44667777666433
No 101
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=62.08 E-value=50 Score=32.28 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=57.1
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHH
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVER 122 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~ 122 (553)
|++|.|.=-+-..-+--+-.|+|...-+.-++.+.++.|..=|..|+-=|.-+..++++|+.-.-+=|-.||-.++...+
T Consensus 119 gd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVR 198 (253)
T 2db0_A 119 GDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198 (253)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHH
T ss_pred CCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhh
Confidence 55666655555555555666666666666666666655554456666666666666666655555555556666665555
Q ss_pred HHHHHHHHHHHccchH
Q 008797 123 DAVHKALMSLLRQDVK 138 (553)
Q Consensus 123 ~~v~~aL~sllk~D~k 138 (553)
..+-.+|..+-..+||
T Consensus 199 aSaVEtL~~lA~~npk 214 (253)
T 2db0_A 199 ASAVEALVHLATLNDK 214 (253)
T ss_dssp HHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHcCHH
Confidence 5555555555555555
No 102
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=61.46 E-value=2.4e+02 Score=32.89 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHhhhhhccC-CchhhHHHHHHhhhccCCCCCChhhhhhHHHHHHHhCCC-C-Cch-hhhhhhHHHH
Q 008797 251 SDADHIDRLISCLYMALPFFLRG-ASGSKFLNYLNKHIIPVFDKLPEERKLDLLKALAEISPY-T-TPQ-DSRQILPSVA 326 (553)
Q Consensus 251 sd~d~idrli~cl~~Alp~fs~~-v~st~f~~y~~~~IlP~l~~l~~~~kl~lLK~lAe~s~~-~-~~~-~a~~~l~~i~ 326 (553)
.+++.+...+.|+..-+..+.-+ +.++.++++++++.++ .++.+.-.+.+|.|+... + ++. ...+.+..+|
T Consensus 207 ~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~-----~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf 281 (1023)
T 4hat_C 207 ASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT-----SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF 281 (1023)
T ss_dssp SSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH-----SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC-----CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHH
Confidence 34556677777777766665332 2246788877755554 234566678888888653 3 221 2334445454
Q ss_pred HHH
Q 008797 327 VLL 329 (553)
Q Consensus 327 ~~L 329 (553)
+.+
T Consensus 282 ~~~ 284 (1023)
T 4hat_C 282 QNT 284 (1023)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 103
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=61.45 E-value=13 Score=41.07 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=70.6
Q ss_pred cchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhH-----HHHHHHHHhhchhHHHHHHHHHHHHHHcc---c
Q 008797 65 LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKI-----VDILVQLLAAEEIVERDAVHKALMSLLRQ---D 136 (553)
Q Consensus 65 L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~ri-----aDVL~QLLqsdd~~E~~~v~~aL~sllk~---D 136 (553)
..+.+|..++.+....|+.++..|...|-.+|..++++...| +-.|++||.++++.....+-.+|..|-.. +
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 355678888888888899999999999999998877764444 46799999999988888888888888863 2
Q ss_pred hH------HHHHHHHHhhccCCCCCChHHHHHHHH
Q 008797 137 VK------ASLTALFKHIGSVDEPSTDEFIREKVL 165 (553)
Q Consensus 137 ~k------~tL~~lf~qI~~~~e~~~eE~vREr~l 165 (553)
.+ |.+..|...+.+ ..+..+++.+.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s----~~~~~~~e~aa 155 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRK----ARDMDLTEVIT 155 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHH----CCSHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcC----CCCHHHHHHHH
Confidence 22 345556666652 13445555543
No 104
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=60.68 E-value=13 Score=41.79 Aligned_cols=116 Identities=24% Similarity=0.259 Sum_probs=84.4
Q ss_pred HHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcch-------hhhHHHHHHHHHhhchhHH
Q 008797 49 QLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEY-------LSKIVDILVQLLAAEEIVE 121 (553)
Q Consensus 49 ~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~-------~~riaDVL~QLLqsdd~~E 121 (553)
.++.+|.--|-+. .+.|..+++|.+.+|-.||..+++-|-.+|..+|+- .+-.+-.|+.+|.++-..-
T Consensus 108 ~~~~~~~d~f~~~-----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~i 182 (651)
T 3grl_A 108 DLGSQFTEIFIKQ-----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVI 182 (651)
T ss_dssp CHHHHHHHHHHHS-----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHH
T ss_pred HHHHHHHHHHHcC-----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHH
Confidence 4555665555543 688999999999999999999999999999999882 2245667888888776677
Q ss_pred HHHHHHHHHHHHccchH--------HHHHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 122 RDAVHKALMSLLRQDVK--------ASLTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 122 ~~~v~~aL~sllk~D~k--------~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
++.+---|.+|-+.++. +++..||+=|.. +.+.+...+=++|+..|..
T Consensus 183 RneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~-Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 183 RNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE-EGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH-HTGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh-cCCCccchhHHHHHHHHHH
Confidence 77777778888888776 888888888762 1111122455666665543
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=60.47 E-value=35 Score=33.74 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=69.8
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHH---hhchh-HHHHHHHHHHHHHHc-cchHHH
Q 008797 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLL---AAEEI-VERDAVHKALMSLLR-QDVKAS 140 (553)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLL---qsdd~-~E~~~v~~aL~sllk-~D~k~t 140 (553)
.++-+....+|..|+.=.||..|+.-|-.+ . -..|+|..+. .+|+. ..+.++-.++..++. .+|..+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~ 140 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKA 140 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHH
Confidence 355556667788888778999999976666 2 2255555443 33333 888899999999997 899988
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 141 LTALFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 141 L~~lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
+..|..|.. +++.-||.-++.+++.
T Consensus 141 l~~~~~W~~-----d~n~~VRR~Ase~~rp 165 (240)
T 3l9t_A 141 LPIIDEWLK-----SSNLHTRRAATEGLRI 165 (240)
T ss_dssp HHHHHHHHH-----CSSHHHHHHHHHHTCS
T ss_pred HHHHHHHhc-----CCCHHHHHHHHHhhHH
Confidence 999999998 7788899999988753
No 106
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=59.23 E-value=7.6 Score=45.46 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=71.2
Q ss_pred ChhhHHHHHHHhc--CCHHHHHHHhhhhhHH-hccCCCcchHHHHHhhh-hhcccchhHHHHHhhccccccccCcchhhh
Q 008797 30 NVKDYEGIIEAAK--TSLKAKQLAAQLIPRF-FKFFPDLSSRAVDAHLD-LIEEEELGVRVQAIRGLPLFCKDTPEYLSK 105 (553)
Q Consensus 30 ~~~~y~~Il~~~k--gs~k~K~LAaqfI~kf-fk~FP~L~e~Ai~a~lD-LcEDed~~IR~~aik~Lp~lck~~~e~~~r 105 (553)
++...+.+|.-.. .+..+++-|.--|..- +.. | +++..+++ |.++.|+.||..|.-+|-.+|-.||. .+
T Consensus 575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~~ 647 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-Y----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--QS 647 (963)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-C----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--HH
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--HH
Confidence 4445555554322 4455666666555532 232 3 35666666 67789999999999999999999984 78
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHccch
Q 008797 106 IVDILVQLLAAEEIVERDAVHKALMSLLRQDV 137 (553)
Q Consensus 106 iaDVL~QLLqsdd~~E~~~v~~aL~sllk~D~ 137 (553)
++|+|..|+...+...+..+--||-.+.....
T Consensus 648 aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 648 AIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 99999999988888877777777766665543
No 107
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=57.63 E-value=2.6e+02 Score=32.03 Aligned_cols=39 Identities=8% Similarity=0.081 Sum_probs=30.5
Q ss_pred hhhhhHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHHHhhhc
Q 008797 318 SRQILPSVAVLLKKYMPLRKTGGEEMNFTYVECLLYTFHHLAHK 361 (553)
Q Consensus 318 a~~~l~~i~~~L~~~mP~~~~~~~~l~fs~vEcLL~afh~L~~k 361 (553)
...+++.+++.|..++-. +..++..+|+.||++..++..
T Consensus 445 ~~~~l~~v~~~l~~~l~~-----~~~~W~~~eaal~algsia~~ 483 (1049)
T 3m1i_C 445 VIDTEEIMISKLARQIDG-----SEWSWHNINTLSWAIGSISGT 483 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHHhcc
Confidence 456778888888887742 346889999999999999764
No 108
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=55.85 E-value=87 Score=31.36 Aligned_cols=104 Identities=12% Similarity=0.041 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHh----c-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccc--cCcch
Q 008797 30 NVKDYEGIIEAA----K-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCK--DTPEY 102 (553)
Q Consensus 30 ~~~~y~~Il~~~----k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck--~~~e~ 102 (553)
+.+.|..++.+. | +++-.-.-||-...+- .=-++...-+|.++.|.+..|..+...|++.|-.+.- ++|++
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i 186 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH 186 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH
Confidence 566676666543 3 5666677788887777 5667789999999999999999999999998877765 56789
Q ss_pred hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc
Q 008797 103 LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 103 ~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (553)
+..|.|=+.-||+++|+.-++.+=.+|-.+++.
T Consensus 187 ~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 187 LTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999999999998777776666666654
No 109
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=55.35 E-value=1.8e+02 Score=30.17 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=67.6
Q ss_pred hHHHHHHHhc-CCHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhcccccccc--------
Q 008797 33 DYEGIIEAAK-TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLFCKD-------- 98 (553)
Q Consensus 33 ~y~~Il~~~k-gs~k~K~LAaqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~~aik~Lp~lck~-------- 98 (553)
.=+.||+... ++.++++-|=.-+.++|..-++++.+ -++++++.+++-+-++..-++++|-++=-.
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 4456666665 77888888888888888777777665 578999999999999998888888777432
Q ss_pred -CcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc
Q 008797 99 -TPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ 135 (553)
Q Consensus 99 -~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~ 135 (553)
+|+ .+.-|+.++.+ ..+.+++.||.=|+.+
T Consensus 199 s~~~----fI~~lyslv~s---~~~~V~k~AL~LL~v~ 229 (339)
T 3dad_A 199 AHSD----TIQWLYTLCAS---LSRLVVKTALKLLLVF 229 (339)
T ss_dssp HCHH----HHHHHHHGGGC---SCHHHHHHHHHHHHHH
T ss_pred CCHH----HHHHHHHHHcC---ccHHHHHHHHHHHHHH
Confidence 333 44444556664 4466676666555443
No 110
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=49.90 E-value=50 Score=40.02 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=43.6
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchh
Q 008797 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (553)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~ 119 (553)
.++-.+.++++.+---..++...|-.||+++-|. + .+.+++.|.+||+.+..
T Consensus 155 ~~~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds-~-H~~v~~~L~~lL~~~~~ 206 (1323)
T 3s4w_B 155 GKDLTAQMMQLISVAPVNLQHDFITSLPEILGDS-Q-HANVGKELGELLVQNTS 206 (1323)
T ss_dssp HHHHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGG-G-HHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHhHHHhcch-h-hHHHHHHHHHHHhcCcc
Confidence 4777888888887777789999999999999886 3 46899999999998653
No 111
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=49.66 E-value=3.4e+02 Score=31.02 Aligned_cols=139 Identities=16% Similarity=0.295 Sum_probs=77.9
Q ss_pred HHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhcc---ccccccCcchhhhHHHHHHHHHhhchhHHHH
Q 008797 47 AKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGL---PLFCKDTPEYLSKIVDILVQLLAAEEIVERD 123 (553)
Q Consensus 47 ~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~L---p~lck~~~e~~~riaDVL~QLLqsdd~~E~~ 123 (553)
..+|.-+-++||..-|-.+++++++.+.+-.++.+.. +.-++.| -...++. |+.=.--|..|
T Consensus 94 l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~--~~ll~~~~~~~~~~~~~--~~~~~l~~~~~----------- 158 (778)
T 3opb_A 94 LSKLIQNDIPFALNLFEILSRSSIHVFVGCFSNKDAT--IALLNELQIRIHYGEDT--HVTYLLSIILQ----------- 158 (778)
T ss_dssp HHHHHHHTHHHHHHHHHTSCGGGHHHHHTTCCSGGGG--HHHHHHHHHHHHHTCSS--CHHHHHHHHHH-----------
T ss_pred HHHHHHhChHHHHHHHHhccCCceEeecccCCCHHHH--HHHHHHHHHHhhcCCCc--chhHHHHHHHH-----------
Confidence 3567788899999999999999999999999888732 2233333 2222221 33333333344
Q ss_pred HHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHH-HHHHhhcccchhhhcCChHHHHHHHHHHHHH-Hhhhc
Q 008797 124 AVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVL-SFIRDKVFPLKAELLKPQEEMERHITDLIKK-VLQSL 201 (553)
Q Consensus 124 ~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~l-kFl~~kl~~l~~e~l~~~eE~E~~i~~~ikK-~~~vL 201 (553)
|++.|..++.. |.-|+..|-. -++++.+|--++ -|++. ... ..++..+.+.+.|.- ++..=
T Consensus 159 -----l~~~~~~~~~~-~~~l~~~~~~---~~~~~~~~~~~l~i~~~~--~~~------~~~~~~~~~~~~~~~l~~e~~ 221 (778)
T 3opb_A 159 -----LLNKFKYNFKE-VRFLVKELIL---RISEDEVKSMMLIIFAEL--QSS------FQKDFDKAVVDFMSSLIVEAE 221 (778)
T ss_dssp -----HHHHSCCCSTT-TTHHHHHHHT---TTTCHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHcCccccc-hhhHHHHhcc---ccChhhhHHHHHHHHHHH--HHh------CchHHHHHHHHHHHHHHHhhc
Confidence 44566666555 6666666652 234445554333 23221 111 124555555555553 11122
Q ss_pred ccccHHHHHHHHHHHh
Q 008797 202 EDVTGAEFRMFMDFLK 217 (553)
Q Consensus 202 ~dVT~eEF~l~m~lL~ 217 (553)
.+++.++|..++++|.
T Consensus 222 ~~~~~~~~~~~~~~l~ 237 (778)
T 3opb_A 222 IDVGNDPLSIIVKTLS 237 (778)
T ss_dssp HTCSSCHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHH
Confidence 4667777777777765
No 112
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.46 E-value=20 Score=31.23 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=28.0
Q ss_pred hhhhhhhc-cHHHHhhhhhcCCCCccCCCccccccccccCCC
Q 008797 443 TTGLRTCN-NILAMSKPLHSKTPSFIGDKSVNLSWKEATKPS 483 (553)
Q Consensus 443 ~~aL~~~~-NI~~li~~L~~~pPsf~~~~~i~lSW~~~~k~~ 483 (553)
+.||..|+ ++...|..|+.+. +.+-+|.+++|+.
T Consensus 58 r~AL~~~ngDl~~AI~~Lleg~-------~~~~~W~~~~kKk 92 (104)
T 1wj7_A 58 VIALHDCNGDVNRAINVLLEGN-------PDTHSWEMVGKKK 92 (104)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCS-------SSCSSCSSCCCCC
T ss_pred HHHHHHcCCCHHHHHHHHHhCC-------CcCCceeeecccc
Confidence 36899998 9999999999985 4577999987554
No 113
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=41.94 E-value=83 Score=30.21 Aligned_cols=83 Identities=10% Similarity=-0.030 Sum_probs=63.0
Q ss_pred hhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhh----cccccc-cc-CcchhhhHHHHHHHHHhhchhHHHHHHHH
Q 008797 54 LIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIR----GLPLFC-KD-TPEYLSKIVDILVQLLAAEEIVERDAVHK 127 (553)
Q Consensus 54 fI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik----~Lp~lc-k~-~~e~~~riaDVL~QLLqsdd~~E~~~v~~ 127 (553)
+++..|++.|. +.+-++.+..|++.=+|..||- =|-.+- |. +..++..+-++....+.+++.-..-++-.
T Consensus 98 ~~~~l~~~~~~----~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W 173 (235)
T 1t06_A 98 VVAVTLSESNI----AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNN 173 (235)
T ss_dssp THHHHHTTSSS----HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHH
T ss_pred HHHHHHhcCch----HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHH
Confidence 34445666666 5667888999999999999997 333322 21 34678888888888999999999999999
Q ss_pred HHHHHHccchHHH
Q 008797 128 ALMSLLRQDVKAS 140 (553)
Q Consensus 128 aL~sllk~D~k~t 140 (553)
+|.++.+.||.-.
T Consensus 174 ~Lr~~gk~~~~~~ 186 (235)
T 1t06_A 174 FLNTVAISYVPLH 186 (235)
T ss_dssp HHHHHHHHCGGGH
T ss_pred HHHHHHhhCHHHH
Confidence 9999988887633
No 114
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=39.43 E-value=39 Score=34.73 Aligned_cols=132 Identities=12% Similarity=0.133 Sum_probs=80.1
Q ss_pred HHhhhhhhccccc-cChhhH-HHHHHHhcCCHHHHHHHhhhhhHH-hccCCCcchHHHHHhhhhhcccchh---------
Q 008797 16 EFGERLNEAKDKS-QNVKDY-EGIIEAAKTSLKAKQLAAQLIPRF-FKFFPDLSSRAVDAHLDLIEEEELG--------- 83 (553)
Q Consensus 16 ~~~~~L~~akdk~-~~~~~y-~~Il~~~kgs~k~K~LAaqfI~kf-fk~FP~L~e~Ai~a~lDLcEDed~~--------- 83 (553)
+|++.+ .+.... ..- +| +.+|..+=|..+++.|-..+.+.- .+-|..|+.---..+.++..+|-++
T Consensus 63 EF~~~~-~~~~~i~~gg-~~~~~~L~~aLg~~~A~~ll~~i~~~~~~~~~~~L~~~dp~~la~~i~~EhPQtiAlILs~L 140 (329)
T 3hjl_A 63 ELLDEI-KKAGIKIKKP-EEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIEKVDSRILASLLKNEHPQTIALFLSQL 140 (329)
T ss_dssp HHHHHH-HHTTCCCSCH-HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTS
T ss_pred HHHHHH-HhcCCCCCch-HHHHHHHHHhCCHHHHHHHHHHHhccccCCHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHcC
Confidence 344444 343332 444 55 789999999999887776655431 2334455555556678888888887
Q ss_pred ---------------HHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHH--HHHHHHHHHHccchHHHHHHHHH
Q 008797 84 ---------------VRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERD--AVHKALMSLLRQDVKASLTALFK 146 (553)
Q Consensus 84 ---------------IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~--~v~~aL~sllk~D~k~tL~~lf~ 146 (553)
+|..-++-+-.+-.=+|+-+..|.++|-..|.+-...... -=.+.+..+|..=.+++-..++.
T Consensus 141 ~p~~AA~vL~~Lp~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~il~ 220 (329)
T 3hjl_A 141 SPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLNTLDKETRELILQ 220 (329)
T ss_dssp CHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhcCChHHHHHHHH
Confidence 4566666666666667777777777776665543221111 01234456666666666666777
Q ss_pred hhc
Q 008797 147 HIG 149 (553)
Q Consensus 147 qI~ 149 (553)
.|.
T Consensus 221 ~L~ 223 (329)
T 3hjl_A 221 SIG 223 (329)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 115
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=36.39 E-value=3.7e+02 Score=27.54 Aligned_cols=173 Identities=19% Similarity=0.264 Sum_probs=89.3
Q ss_pred cchhHHHHHhhccccccccCcch-----------hhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc---ch-------H
Q 008797 80 EELGVRVQAIRGLPLFCKDTPEY-----------LSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ---DV-------K 138 (553)
Q Consensus 80 ed~~IR~~aik~Lp~lck~~~e~-----------~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~---D~-------k 138 (553)
.++.||-+|.+=|-.--++||.- +..+.+-|.++..... ....++.+..++++.- +| -
T Consensus 82 ~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~-~~~~~l~KR~LsII~~L~~~~~~F~~~~m 160 (315)
T 3qml_C 82 LPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNH-RSSNILIKRYLSILNELPVTSEDLPIYST 160 (315)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHSCCCSTTC--CCH
T ss_pred CChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHhcChHhhhhccH
Confidence 34556777666655555555543 3333333333321100 0122555555554432 22 2
Q ss_pred HHHHHHHHhhccCCCCCChHHHHHHHHHHHHhhcc-cchhh------hcC-----ChHHHHHHHHHHHHHHhhhcccc--
Q 008797 139 ASLTALFKHIGSVDEPSTDEFIREKVLSFIRDKVF-PLKAE------LLK-----PQEEMERHITDLIKKVLQSLEDV-- 204 (553)
Q Consensus 139 ~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~kl~-~l~~e------~l~-----~~eE~E~~i~~~ikK~~~vL~dV-- 204 (553)
.+|..+|. +. ..+..++.|++..|..-.. .++.. +-+ |..++.+ ...++-+ .+++-
T Consensus 161 ~~L~~ly~-~~-----~~d~~~k~Kvl~li~d~f~~~~~~~~~~~~~~~kR~~e~~~~~~q~-w~~~~q~---~iq~k~~ 230 (315)
T 3qml_C 161 VVLQNVYE-RN-----NKDKQLQIKVLELISKILKADMYENDDTNLILFKRNAENWSSNLQE-WANEFQE---MVQNKSI 230 (315)
T ss_dssp HHHHHHHH-HT-----TTCHHHHHHHHHHHHHHHHHHTTC-------------------CHH-HHHHHHH---HHTCTTS
T ss_pred HHHHHHHc-cC-----CCCHHHHHHHHHHHHHHcccccccccccccchhhhcccccCchHHH-HHHHHHH---HHhcccc
Confidence 56777775 22 3367889999998776332 12111 111 1111221 3344555 44433
Q ss_pred cHHHHHHHHHHHhhccc-c-CCCCchhHHHHHHHHHHHhhh-----ccccCCCCC--hHHHHHHHHHHHHh
Q 008797 205 TGAEFRMFMDFLKSLSL-F-GEKAPTERMKELIGIIEGQAD-----LDAQFNVSD--ADHIDRLISCLYMA 266 (553)
Q Consensus 205 T~eEF~l~m~lL~sl~~-~-~~~s~~gr~qeLv~~i~eqa~-----Ld~~f~~sd--~d~idrli~cl~~A 266 (553)
+...|..|+.-|..++. + .+..|. ...+++++.+++ +......-| .+.+|+.+--.+|.
T Consensus 231 dE~~~r~fF~~L~~ik~~~~~~lK~~---~~FLnWLa~E~e~Rk~~~~~~~~~rd~eq~~FD~~li~sRH~ 298 (315)
T 3qml_C 231 DELHTRTFFDTLYNLKKIFKSDITIN---KGFLNWLAQQCKARQSNLDNGLQERDTEQDSFDKKLIDSRHL 298 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCCC---HHHHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcccccCCC---HHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHHHHHH
Confidence 33356788888877776 5 345555 679999988866 444444433 35778877666664
No 116
>2yu0_A Interferon-activable protein 205; PAAD_dapin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.81 E-value=86 Score=26.74 Aligned_cols=23 Identities=30% Similarity=0.506 Sum_probs=20.0
Q ss_pred hhhcccccHHHHHHHHHHHhhccc
Q 008797 198 LQSLEDVTGAEFRMFMDFLKSLSL 221 (553)
Q Consensus 198 ~~vL~dVT~eEF~l~m~lL~sl~~ 221 (553)
|..|+++|..+|.+|..+|.. .+
T Consensus 11 L~gLE~l~~~~Fk~fK~lL~~-dL 33 (94)
T 2yu0_A 11 LRGLECINKHYFSLFKSLLAR-DL 33 (94)
T ss_dssp TTTTTTSCHHHHHHHHHHHHT-TT
T ss_pred HHHHhcCCHHHHHHHHHHhcc-cc
Confidence 558999999999999999887 55
No 117
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=34.70 E-value=12 Score=36.70 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=61.0
Q ss_pred Hhc-CCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhch
Q 008797 40 AAK-TSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEE 118 (553)
Q Consensus 40 ~~k-gs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd 118 (553)
..+ .++.+..-++..++. +.+..|.+|+|..||..++..||. +.|.+|+..++
T Consensus 154 l~~D~d~~VR~~aa~~l~~-------------~ll~~ll~D~d~~VR~aaa~~l~~-------------~~L~~Ll~D~d 207 (244)
T 1lrv_A 154 FMRDEDRQVRKLVAKRLPE-------------ESLGLMTQDPEPEVRRIVASRLRG-------------DDLLELLHDPD 207 (244)
T ss_dssp TTTCSCHHHHHHHHHHSCG-------------GGGGGSTTCSSHHHHHHHHHHCCG-------------GGGGGGGGCSS
T ss_pred HHcCCCHHHHHHHHHcCCH-------------HHHHHHHcCCCHHHHHHHHHhCCH-------------HHHHHHHcCCC
Confidence 444 667787777776431 345578899999999999998742 57888999999
Q ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHHhhccCCCCCChHHHHHHHH
Q 008797 119 IVERDAVHKALMSLLRQDVKASLTALFKHIGSVDEPSTDEFIREKVL 165 (553)
Q Consensus 119 ~~E~~~v~~aL~sllk~D~k~tL~~lf~qI~~~~e~~~eE~vREr~l 165 (553)
...+..+-.+|- .. .+..+. ..+..||+.+.
T Consensus 208 ~~VR~~aa~~l~-------~~----~L~~L~-----D~~~~VR~aa~ 238 (244)
T 1lrv_A 208 WTVRLAAVEHAS-------LE----ALRELD-----EPDPEVRLAIA 238 (244)
T ss_dssp HHHHHHHHHHSC-------HH----HHHHCC-----CCCHHHHHHHH
T ss_pred HHHHHHHHHcCC-------HH----HHHHcc-----CCCHHHHHHHH
Confidence 999999988877 12 333342 56678888765
No 118
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=34.49 E-value=1.4e+02 Score=35.41 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=71.1
Q ss_pred HHHHHHHh---c-CCHHHHHHHhhhhh---HHhccCCCcchHHHHHhhhhhcc------------cchhHHHHHhhcccc
Q 008797 34 YEGIIEAA---K-TSLKAKQLAAQLIP---RFFKFFPDLSSRAVDAHLDLIEE------------EELGVRVQAIRGLPL 94 (553)
Q Consensus 34 y~~Il~~~---k-gs~k~K~LAaqfI~---kffk~FP~L~e~Ai~a~lDLcED------------ed~~IR~~aik~Lp~ 94 (553)
...+|... . .+++...-+-+.|. .||.+.|++-...++.++..+.| ....||..|--.|-.
T Consensus 531 ~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~ 610 (1204)
T 3a6p_A 531 GIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610 (1204)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHH
Confidence 44555542 3 46776666666554 56667799999999999987766 334799999999999
Q ss_pred ccccCcchhhhHHH----HHHHHHhhch---hHHHHHHHHHHHHHH
Q 008797 95 FCKDTPEYLSKIVD----ILVQLLAAEE---IVERDAVHKALMSLL 133 (553)
Q Consensus 95 lck~~~e~~~riaD----VL~QLLqsdd---~~E~~~v~~aL~sll 133 (553)
||++-++++.-..| .+.+++.+.. ..|......||..+-
T Consensus 611 L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia 656 (1204)
T 3a6p_A 611 MCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLIS 656 (1204)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHh
Confidence 99999887644444 3345665444 678888888887663
No 119
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=34.07 E-value=47 Score=37.40 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=69.1
Q ss_pred cCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHH
Q 008797 42 KTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVE 121 (553)
Q Consensus 42 kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E 121 (553)
.+..=+=+-++=+.-||++++=..=+..+++++..-.|.|-+||.-|--.|-.++ .|+.+..+.++|-.+|..-| +
T Consensus 273 ~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~LD--D 348 (800)
T 3oc3_A 273 DSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESEE--L 348 (800)
T ss_dssp GCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTCC--S
T ss_pred CCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhhc--c
Confidence 4444455667777888885543333667778887779999999999999999999 67889999999999988743 2
Q ss_pred HHHHHHHHHHHHcc
Q 008797 122 RDAVHKALMSLLRQ 135 (553)
Q Consensus 122 ~~~v~~aL~sllk~ 135 (553)
+.+...++|+||..
T Consensus 349 LSASTgSVMdLLAk 362 (800)
T 3oc3_A 349 ISVSKTSNLSLLTK 362 (800)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 77888888887654
No 120
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=33.16 E-value=9 Score=38.65 Aligned_cols=12 Identities=50% Similarity=1.030 Sum_probs=0.0
Q ss_pred CCCCCCCCCccc
Q 008797 530 RGGRGGIRGRGR 541 (553)
Q Consensus 530 ~~~~~g~rgrgr 541 (553)
||||||.||++|
T Consensus 237 rgg~g~~~~~~~ 248 (273)
T 3u5c_h 237 RGGRGARKGNNT 248 (273)
T ss_dssp ------------
T ss_pred cCCcccccCCCC
Confidence 344444444433
No 121
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=32.09 E-value=32 Score=34.27 Aligned_cols=29 Identities=10% Similarity=0.307 Sum_probs=21.6
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHccc
Q 008797 108 DILVQLLAAEEIVERDAVHKALMSLLRQD 136 (553)
Q Consensus 108 DVL~QLLqsdd~~E~~~v~~aL~sllk~D 136 (553)
--++++|.+-|+..++++-+++++++++-
T Consensus 210 ~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 210 KTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 33556777778888888888888888873
No 122
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=32.01 E-value=35 Score=36.96 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCHHHHHHHhhhhhHHhccCCCcchH-----HHHHhhhhhcccchhHHHHHhhccccc
Q 008797 43 TSLKAKQLAAQLIPRFFKFFPDLSSR-----AVDAHLDLIEEEELGVRVQAIRGLPLF 95 (553)
Q Consensus 43 gs~k~K~LAaqfI~kffk~FP~L~e~-----Ai~a~lDLcEDed~~IR~~aik~Lp~l 95 (553)
.++.+--.|+.=|..|.+++|.-..- +=..++.|..++|+.||.+|++.+-.+
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 35778889999999999999976543 456779999999999999999876543
No 123
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=31.94 E-value=27 Score=30.45 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=39.4
Q ss_pred chHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhH
Q 008797 66 SSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIV 120 (553)
Q Consensus 66 ~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~ 120 (553)
.++++...|+=+... .+.|..+..+|.++.+|-..|++++.+.+....+.
T Consensus 5 ~~~~l~~~L~~L~~s-----~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~ 54 (135)
T 4fu3_A 5 SESALEKKLSELSNS-----QQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSN 54 (135)
T ss_dssp CHHHHHHHHHHCCSS-----TTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 567888888766432 35677889999999999999999999998876653
No 124
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.49 E-value=14 Score=34.76 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=8.1
Q ss_pred hhHhhcCChHHHHH
Q 008797 421 KEMAAAKTDEAKEK 434 (553)
Q Consensus 421 K~~~~~k~ee~k~k 434 (553)
....+.+.|+++++
T Consensus 103 aL~~a~~~DeakI~ 116 (175)
T 3lay_A 103 ALLTASSPDTAKIN 116 (175)
T ss_dssp HHHTSSSCCHHHHH
T ss_pred HHHhCCCCCHHHHH
Confidence 44445566777655
No 125
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=29.85 E-value=7.5e+02 Score=29.14 Aligned_cols=76 Identities=12% Similarity=0.116 Sum_probs=37.7
Q ss_pred ccchHHHHHHHHHhhhhhhccccccChhhHHHHHHHhc--CCHH-HHHHHhhhhhHHhccCCCcchHHHHHhhhhhcccc
Q 008797 5 SDEAKQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAK--TSLK-AKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEEEE 81 (553)
Q Consensus 5 ~~~~~~ie~LY~~~~~L~~akdk~~~~~~y~~Il~~~k--gs~k-~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcEDed 81 (553)
.|..++|+.|++++...-..=+..+...-|+.+=--+. +... -.++...+++--...+=.+.++| ..-.|++.|.|
T Consensus 607 ~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~-~~~~~~~~d~~ 685 (1073)
T 3gjx_A 607 GEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQA-TKNVDILKDPE 685 (1073)
T ss_dssp TCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHH-HHCGGGGGCHH
T ss_pred cccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHh-hcCchhccChH
Confidence 34566778787766544222222234445655433222 4443 45566666665554443333333 12345666654
No 126
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=29.68 E-value=1.7e+02 Score=28.76 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHhhccccC-CCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHhhh
Q 008797 190 ITDLIKKVLQSLEDVTGAEFRMFMDFLKSLSLFG-EKAPTERMKELIGIIEGQADLDAQFNVSDADHIDRLISCLYMALP 268 (553)
Q Consensus 190 i~~~ikK~~~vL~dVT~eEF~l~m~lL~sl~~~~-~~s~~gr~qeLv~~i~eqa~Ld~~f~~sd~d~idrli~cl~~Alp 268 (553)
+...|+. +|-.+|.+-|..+..=+-.+.+-. ...-..+.+.+|++|.++|-.+..| .....++..++..-+|
T Consensus 36 l~r~vkg---iLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~ep~f----s~~YA~Lc~~l~~~l~ 108 (284)
T 2vso_E 36 VERKMKS---LLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDEPHW----SSMYAQLCGKVVKELN 108 (284)
T ss_dssp HHHHHHH---HHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHSC
T ss_pred HHHHHHH---HHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcCcch----HHHHHHHHHHHHHhcC
Confidence 3444455 555677788875544443333210 0011235677899999987666555 4556788887777665
No 127
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=29.54 E-value=76 Score=35.00 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=44.4
Q ss_pred cchHHHHHhhhhhcccchhHHHHHhhccccccccCcchhh-----hHH-HHHHHHHhhchhHHHHHHHHHHHHH
Q 008797 65 LSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLS-----KIV-DILVQLLAAEEIVERDAVHKALMSL 132 (553)
Q Consensus 65 L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~-----ria-DVL~QLLqsdd~~E~~~v~~aL~sl 132 (553)
+.+.+|--+++.....|+.+|..|..+|-.||.+ +.... +++ =+|.++|...+...+..+-.+|..|
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL 103 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVL 103 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3455666677778888888888888888888864 44321 233 3456677776766676666666544
No 128
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=29.33 E-value=23 Score=26.70 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.2
Q ss_pred hhhhhhc-cHHHHhhhhhcCCCC
Q 008797 444 TGLRTCN-NILAMSKPLHSKTPS 465 (553)
Q Consensus 444 ~aL~~~~-NI~~li~~L~~~pPs 465 (553)
.||+.|+ |+...+..|+.++||
T Consensus 31 ~AL~~t~gnve~Ave~L~~~~~s 53 (53)
T 2knz_A 31 QALIATGGDINAAIERLLGSQLS 53 (53)
T ss_dssp HHHHHHTSCHHHHHHHHHHCCCC
T ss_pred HHHHHhCCCHHHHHHHHHHcCCC
Confidence 5889988 899999999998765
No 129
>2dbg_A MNDA, myeloid cell nuclear differentiation antigen; interferon induction, DNA-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.81 E-value=47 Score=28.84 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.1
Q ss_pred hhhcccccHHHHHHHHHHHhhccc
Q 008797 198 LQSLEDVTGAEFRMFMDFLKSLSL 221 (553)
Q Consensus 198 ~~vL~dVT~eEF~l~m~lL~sl~~ 221 (553)
|..|+++|..+|.+|..+|.. .+
T Consensus 18 L~gLE~L~~~~Fk~fK~lL~~-dL 40 (103)
T 2dbg_A 18 LKGFELMDDYHFTSIKSLLAY-DL 40 (103)
T ss_dssp HTTTTTCCHHHHHHHHHHHHH-HH
T ss_pred HHHHhcCCHHHHHHHHHHhcc-cc
Confidence 348999999999999999987 65
No 130
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=23.90 E-value=2.7e+02 Score=27.62 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=26.2
Q ss_pred cChhhHHHHHHHhcC-C--HH-HHHHHhhhhhHHhccCCCcch
Q 008797 29 QNVKDYEGIIEAAKT-S--LK-AKQLAAQLIPRFFKFFPDLSS 67 (553)
Q Consensus 29 ~~~~~y~~Il~~~kg-s--~k-~K~LAaqfI~kffk~FP~L~e 67 (553)
+..++|+.|+.+..- + .+ .-.++-..--.|-.|||+|..
T Consensus 12 e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~ 54 (260)
T 2ozb_B 12 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELES 54 (260)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHH
Confidence 566789999998872 2 33 333444444556699999986
No 131
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.36 E-value=17 Score=37.46 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=0.0
Q ss_pred hhhhcCCCCCCCCCCCCcccCCCCCCCCCCC
Q 008797 522 NRALEGISRGGRGGIRGRGRGWGARGRGRGY 552 (553)
Q Consensus 522 ~~~~~g~~~~~~~g~rgrgr~~g~~gr~~~~ 552 (553)
...+-|-|+||.+|+.|-|-|.||.|.|.||
T Consensus 277 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (358)
T 2pk2_A 277 KTSEQGGTGGGSGGGSGGGSGGGTSGGVPGQ 307 (358)
T ss_dssp -------------------------------
T ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCc
No 132
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=22.92 E-value=2.2e+02 Score=25.40 Aligned_cols=51 Identities=4% Similarity=0.104 Sum_probs=35.9
Q ss_pred HHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchh
Q 008797 69 AVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI 119 (553)
Q Consensus 69 Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~ 119 (553)
++++.|+=..|--+.+=.+-|..|-.+|.++..|-+.|++++.+-+..-.+
T Consensus 6 ~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~ 56 (145)
T 3d9j_A 6 TFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKP 56 (145)
T ss_dssp HHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 444444333332234666788899999999999999999999887777554
No 133
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.84 E-value=1.1e+02 Score=26.23 Aligned_cols=33 Identities=9% Similarity=0.292 Sum_probs=29.8
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008797 386 DFSDCYKDFTERLTTVEDLTRATMKKLTQGLAD 418 (553)
Q Consensus 386 D~~~~~kdFr~RLqyl~~~~q~yikkl~~~l~~ 418 (553)
.|++-++++..+|+-|...++.||.-|++.|+-
T Consensus 49 kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~v 81 (94)
T 3fx7_A 49 KFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRV 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH
Confidence 578889999999999999999999999988853
No 134
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=22.74 E-value=4.1e+02 Score=26.23 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=59.5
Q ss_pred HHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHH---HHHHHHHccchHHHH---HH
Q 008797 70 VDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVH---KALMSLLRQDVKASL---TA 143 (553)
Q Consensus 70 i~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~---~aL~sllk~D~k~tL---~~ 143 (553)
+=++++=+.|.-..||-++..-|-.+|.-.| -+++.+.|+.-+.+-.+-.+..+= .++++.+-+.|...| ..
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ 211 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKT 211 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHH
Confidence 4556777778877788777666666665322 356888888888776664444433 333444444566666 66
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHHHh
Q 008797 144 LFKHIGSVDEPSTDEFIREKVLSFIRD 170 (553)
Q Consensus 144 lf~qI~~~~e~~~eE~vREr~lkFl~~ 170 (553)
+..++. +-|..||+-++.-+.+
T Consensus 212 ia~ll~-----D~d~~VR~aAl~~lve 233 (266)
T 2of3_A 212 VAPFVG-----DKDVNVRNAAINVLVA 233 (266)
T ss_dssp HGGGGG-----CSSHHHHHHHHHHHHH
T ss_pred HHHHHc-----CCCHHHHHHHHHHHHH
Confidence 777776 4566788877776553
No 135
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=22.17 E-value=73 Score=37.31 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=61.9
Q ss_pred hHHhccCCCcchHHHHHhhhhhcccchhHHHHHhhccccccccCcc------------hhhhHHHHHHHHHhhchhHHHH
Q 008797 56 PRFFKFFPDLSSRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPE------------YLSKIVDILVQLLAAEEIVERD 123 (553)
Q Consensus 56 ~kffk~FP~L~e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e------------~~~riaDVL~QLLqsdd~~E~~ 123 (553)
++|++..|+.=...++.++.-..|+.+.|.-.|..+|-.||.+-.+ |+..+...+.+.+..=++..+.
T Consensus 528 ~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~ 607 (1023)
T 4hat_C 528 PRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1023)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 5677778888889999999988888888998898888888876433 4555555566666555667777
Q ss_pred HHHHHHHHHHccch
Q 008797 124 AVHKALMSLLRQDV 137 (553)
Q Consensus 124 ~v~~aL~sllk~D~ 137 (553)
.+..|+..+++.-|
T Consensus 608 ~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 608 TFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCC
Confidence 88888888887644
No 136
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.59 E-value=1.9e+02 Score=25.85 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=48.1
Q ss_pred HHHHhhccccccccCcchhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHcc-------chHHHHHHHHHhhccCCCCCCh
Q 008797 85 RVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQ-------DVKASLTALFKHIGSVDEPSTD 157 (553)
Q Consensus 85 R~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~E~~~v~~aL~sllk~-------D~k~tL~~lf~qI~~~~e~~~e 157 (553)
-++-|..|-.+|.+|-+|-+.|++++.+-+..-.|.-.-.+==-+.++++. .+...|-.+|.+.-. ..+
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~----~~d 98 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYL----LVD 98 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHH----TSC
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH----hCC
Confidence 456677889999999999899999988777654443332222222333332 122223334444431 345
Q ss_pred HHHHHHHHHHHHh
Q 008797 158 EFIREKVLSFIRD 170 (553)
Q Consensus 158 E~vREr~lkFl~~ 170 (553)
+.+|.++.+.+..
T Consensus 99 ~~~r~k~~rL~~~ 111 (144)
T 1sz9_A 99 NTTRTKLINMFKL 111 (144)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776655
No 137
>1d9c_A Interferon-gamma; helical homodimer, immune system; 2.00A {Bos taurus} SCOP: a.26.1.3 PDB: 1d9g_A 1rfb_A
Probab=21.35 E-value=46 Score=29.73 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCc
Q 008797 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL 65 (553)
Q Consensus 9 ~~ie~LY~~~~~L~~akdk~~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L 65 (553)
++||.|-.||+ ++.+|=+..-.-|..|+.--+.....|.+=+|.++=|||-|-.+
T Consensus 6 ~~Ie~Lk~yfN--~s~~dv~dggplFl~ilknw~ee~dkkIi~SqIvs~Y~klF~~m 60 (121)
T 1d9c_A 6 REIENLKEYFN--ASSPDVAKGGPLFSEILKNWKDESDKKIIQSQIVSFYFKLFENL 60 (121)
T ss_dssp HHHHHHHHHHT--CSSTTSSTTCCSSHHHHHHTTTCTTTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--cCcccccCCCCchhHhhhhhccccchhhHHHHHHHHHHHHHHHh
Confidence 67999988885 23333345566799999998888888999999999999976543
No 138
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.96 E-value=1.3e+02 Score=26.05 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=38.8
Q ss_pred hHHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchhH
Q 008797 67 SRAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEIV 120 (553)
Q Consensus 67 e~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~~ 120 (553)
+.+++..|+=+.. -.+.|..+...|.++.+|-+.|++++.+-+....+.
T Consensus 7 e~~l~~~L~~L~~-----s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~ 55 (132)
T 4flb_A 7 ESSLDRKFQSVTN-----TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYP 55 (132)
T ss_dssp HHHHHHHHHHCCS-----SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHCcc-----cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChh
Confidence 5677777766643 257888999999999999999999999988876553
No 139
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=20.46 E-value=2.6e+02 Score=25.71 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=60.6
Q ss_pred HHHHHhhhhhcccchhHHHHHhhccccccccCcchhhhHHHHHHHHHhhchh--------HHHHHHHHHHHHHHcc----
Q 008797 68 RAVDAHLDLIEEEELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQLLAAEEI--------VERDAVHKALMSLLRQ---- 135 (553)
Q Consensus 68 ~Ai~a~lDLcEDed~~IR~~aik~Lp~lck~~~e~~~riaDVL~QLLqsdd~--------~E~~~v~~aL~sllk~---- 135 (553)
..+.++.||+ +.|=..=|+.|-.+|.+|-++-+.|+..|....+.=-+ +.=.+|++++.+.=+.
T Consensus 8 ~~L~sL~~lk----p~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~ 83 (157)
T 3clj_A 8 ATLESFKDLK----SGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNSS 83 (157)
T ss_dssp HHHHGGGGCS----SSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHcC----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCcc
Confidence 4556667777 44544556777888999988888888888777776433 2223445544433111
Q ss_pred -ch-----------HHHHHHHHHhhccCCCCCChHHHHHHHHHHHHh--hcccchhhhcC
Q 008797 136 -DV-----------KASLTALFKHIGSVDEPSTDEFIREKVLSFIRD--KVFPLKAELLK 181 (553)
Q Consensus 136 -D~-----------k~tL~~lf~qI~~~~e~~~eE~vREr~lkFl~~--kl~~l~~e~l~ 181 (553)
.| ...+..+|+.+.. ..++..|+++.+.|.. |=...|.+++.
T Consensus 84 ~a~~gt~a~~v~~~~e~i~~l~~~~~~----~~~~~~k~Ki~klldiW~k~~~Fp~e~i~ 139 (157)
T 3clj_A 84 SNKPGTCAHAINTLGEVIQELLSDAIA----KSNQDHKEKIRMLLDIWDRSGLFQKSYLN 139 (157)
T ss_dssp --STTSHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHTTTTTSCCT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHccCCCCCHHHHH
Confidence 12 2334555555331 2346677777776554 43334555554
No 140
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=20.22 E-value=4.3e+02 Score=22.99 Aligned_cols=68 Identities=10% Similarity=0.105 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCHHHHHHHhhhhhHHhccCCCcchHHHHHhhhhhcc-cchhHHHHHhhccccccccCcchhhhHHHHHHH
Q 008797 34 YEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDLSSRAVDAHLDLIEE-EELGVRVQAIRGLPLFCKDTPEYLSKIVDILVQ 112 (553)
Q Consensus 34 y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L~e~Ai~a~lDLcED-ed~~IR~~aik~Lp~lck~~~e~~~riaDVL~Q 112 (553)
-+.....++++ ...++..|..|+|..+|+++. =|+..=|+-.+ .++++|. |-.++++.|..
T Consensus 19 V~~sw~~v~~~--~~~~g~~~~~rlF~~~P~~k~-~F~~~~~~~~~~~~~~~~~---------------H~~~v~~al~~ 80 (150)
T 4hrt_A 19 LRRSWGVLSAD--IEATGLMLMSNLFTLRPDTKT-YFTRLGDVQKGKANSKLRG---------------HAITLTYALNN 80 (150)
T ss_dssp HHHHHHHHTTC--HHHHHHHHHHHHHHHCGGGGG-GGGGGCCGGGGGGSHHHHH---------------HHHHHHHHHHH
T ss_pred HHHHHHHHHhC--HHHHHHHHHHHHHHHCHHHHH-HHHHcCCCCccccCHHHHH---------------HHHHHHHHHHH
Confidence 34444445544 356999999999999999985 33332244333 2345553 34566666655
Q ss_pred HHhh-chh
Q 008797 113 LLAA-EEI 119 (553)
Q Consensus 113 LLqs-dd~ 119 (553)
.... |++
T Consensus 81 ~v~~ldd~ 88 (150)
T 4hrt_A 81 FVDSLDDP 88 (150)
T ss_dssp HHHTTTCH
T ss_pred HHHHCCCH
Confidence 5544 443
No 141
>2rig_A Interferon-gamma; cytokine; 2.30A {Oryctolagus cuniculus} SCOP: a.26.1.3
Probab=20.15 E-value=57 Score=29.92 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhhhhccccccChhhHHHHHHHhcCCHHHHHHHhhhhhHHhccCCCc
Q 008797 9 KQIEKLYEFGERLNEAKDKSQNVKDYEGIIEAAKTSLKAKQLAAQLIPRFFKFFPDL 65 (553)
Q Consensus 9 ~~ie~LY~~~~~L~~akdk~~~~~~y~~Il~~~kgs~k~K~LAaqfI~kffk~FP~L 65 (553)
++||.|-.||+ ++.+|=+..-.-|..|+.--+.....|.+=+|.++=|||-|-.|
T Consensus 6 k~Ie~LK~yfN--~s~~Dv~dggplFl~ilknw~ee~ekkIi~SqIvs~Y~klF~~m 60 (144)
T 2rig_A 6 RETEHLKAYLK--ANTSDVANGGPLFLNILRNWKEESDNKIIQSQIVSFYFKLFDNL 60 (144)
T ss_pred HHHHHHHHHhc--cCcccccCCCCchhHhhhhhhhccchhhHHHHHHHHHHHHHHHh
Confidence 67999988884 23333345567799999988888888999999999999987544
No 142
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=20.02 E-value=35 Score=29.86 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred hhhhhccHHHHhhhhhcCCCCccCCCccccccccccCCCCCCCCCCCCCCCCCcCCCCCCcccccCCCCCCcchhhhhhh
Q 008797 445 GLRTCNNILAMSKPLHSKTPSFIGDKSVNLSWKEATKPSVPSTTTASGGKRPASINGSGNTASKKGRGSGGLQNQLVNRA 524 (553)
Q Consensus 445 aL~~~~NI~~li~~L~~~pPsf~~~~~i~lSW~~~~k~~~~~~~~~~~gkr~~~~~g~~~~~~~~gr~~~~~~~~~~~~~ 524 (553)
|+=+..|.....+.+..-.........|.++|..+.++... .++|...
T Consensus 84 afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~------------~~~~~~g-------------------- 131 (156)
T 1h2v_Z 84 CFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQ------------YGRGRSG-------------------- 131 (156)
T ss_dssp EEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTTCC---------------------------------------
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCcCC------------CCCCCCC--------------------
Q ss_pred hcCCCCCCCCCCCCcccCCCCCCCC
Q 008797 525 LEGISRGGRGGIRGRGRGWGARGRG 549 (553)
Q Consensus 525 ~~g~~~~~~~g~rgrgr~~g~~gr~ 549 (553)
|-.+++.+|+.+.|||..|+|+.
T Consensus 132 --~~~r~~~r~~~~~~rGG~g~~~~ 154 (156)
T 1h2v_Z 132 --GQVRDEYRQDYDAGRGGYGKLAQ 154 (156)
T ss_dssp -------------------------
T ss_pred --CCCCCCccCCCCCCCCCCCcCcc
Done!