BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008799
(553 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 164/558 (29%), Positives = 257/558 (46%), Gaps = 57/558 (10%)
Query: 21 SAVRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-YNVTIH 79
S +RHY + V C ++ +NG+FPGPT+ A D+V+V +TN + V IH
Sbjct: 1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIH 60
Query: 80 WHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAI 138
WHG+ Q T W DG A I+QC I PG+++ YNFT+ GT +H H+ R A ++G++
Sbjct: 61 WHGILQRGTPWADGTASISQCAINPGETFFYNFTVD-NPGTFFYHGHLGMQRSAGLYGSL 119
Query: 139 VILPKRSVPYPFPKADKEKIIVFGEWWKADVEA-------------------VINQATQM 179
++ P + PF D E ++ +WW + ++N Q
Sbjct: 120 IVDPPQGKKEPF-HYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQF 178
Query: 180 GVAPNVSDAHTINGHPGPVTNCTSQG-FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNL 238
+ ++ + N P + S + HV KTY +RI + L F I H L
Sbjct: 179 DCS--IAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQL 236
Query: 239 TVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGK-YLITISPFMDTIVAVNNVTGI 297
VVE D +Y +PF T I I G++ + L+T D+ + Y +++ N G+
Sbjct: 237 LVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVG---TRARHPNTPPGL 293
Query: 298 AFLRY--KGTVAFSSTTLTNVPAINATEVTNTFSDNL-RSLNSKRYPAKVPLTVDHSLLL 354
L Y ++ PA + + + F+ + ++ S + P K + LL
Sbjct: 294 TLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPKPPVKFNRRI---FLL 350
Query: 355 TMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHYYKISGVFTDDFPAKPPIAF-- 412
+N V A+N++S +P T L A Y + F + PP F
Sbjct: 351 NTQNVIN--------GYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQN---PPPEVFPE 399
Query: 413 NYTGNYTGTLQTTN-GTRLYRLAYNSTVQLVLQGTTVIAP---ENHPTHLHGFNFFAVGK 468
+Y + T + T G +Y+ V ++LQ ++ E HP HLHG +F+ +G
Sbjct: 400 DYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGY 459
Query: 469 GSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLK 528
G G F ++ NL +P RNT+ + GWTAIRF ADNPGVW HCH+E H G+
Sbjct: 460 GDGKFSAEEE-SSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMG 518
Query: 529 MAF---VVDNGKGPNESL 543
+ F V G+ P ++L
Sbjct: 519 VVFAEGVEKVGRIPTKAL 536
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 198 bits (503), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 161/508 (31%), Positives = 234/508 (46%), Gaps = 74/508 (14%)
Query: 42 KSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPAY 96
+ + VNG FP P + ++ D NV+ +TNH T IHWHG Q T W DGPA+
Sbjct: 22 RDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAF 81
Query: 97 ITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL-PKRSVPYPFPKAD 154
+ QCPI G S++Y+F + Q GT +H+H+S + G V+ PK + +
Sbjct: 82 VNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHASRYDVDN 141
Query: 155 KEKIIVFGEWWKADVEAVINQATQMGVA-PNVSDAHTINGHPGPVTNCTSQGFTLHVESG 213
+ +I +W+ + A ++G P +DA ING + T+ ++V+ G
Sbjct: 142 ESTVITLTDWY--------HTAARLGPRFPLGADATLINGLGRSASTPTAALAVINVQHG 193
Query: 214 KTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKK 273
K Y R+V+ + + F I GHNLTV+EVD ++P D+I I Q + +L A++
Sbjct: 194 KRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAAQRYSFVLNANQT 253
Query: 274 IGKYLITISPFMDTIVAVNNVTGIAFLRYKGT-VAFSSTTLTNVPAINATEVTNTFSDNL 332
+G Y I +P T+ + A LRY+G VA +TT T T V NL
Sbjct: 254 VGNYWIRANPNFGTVGFAGGINS-AILRYQGAPVAEPTTTQT-------TSVIPLIETNL 305
Query: 333 RSLNSKRYPAK-VPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQA 391
L P P VD +L L NGT +NN SF PT +L
Sbjct: 306 HPLARMPVPGSPTPGGVDKALNLAFNF---------NGTNF--FINNASFTPPTVPVL-- 352
Query: 392 HYYKISGVFT--DDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVI 449
+SG T D PA +Y L +ST+++ L T +
Sbjct: 353 -LQILSGAQTAQDLLPAG---------------------SVYPLPAHSTIEITLPATALA 390
Query: 450 APENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISV--PTAGWTA-IRFR 506
HP HLHG + FAV + +G+ +N DP+ R+ +S P AG IRF+
Sbjct: 391 PGAPHPFHLHG-HAFAVVRSAGS-------TTYNYNDPIFRDVVSTGTPAAGDNVTIRFQ 442
Query: 507 ADNPGVWFLHCHLEVHTSWGLKMAFVVD 534
DNPG WFLHCH++ H G + F D
Sbjct: 443 TDNPGPWFLHCHIDFHLEAGFAIVFAED 470
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 159/542 (29%), Positives = 239/542 (44%), Gaps = 101/542 (18%)
Query: 24 RHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVT-IHWHG 82
R Y +V + +T ++S +T NG PGP + A DN+I+ VTN++++N T IHWHG
Sbjct: 68 REYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHG 127
Query: 83 VRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL 141
+RQL + YDG +TQCPI PG + Y F +T Q GT +H+H S + G ++I
Sbjct: 128 IRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIIN 186
Query: 142 PKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDA-----HTINGHPG 196
+ Y D++ ++F + W + I ++G P + + +T +
Sbjct: 187 GPATADY-----DEDVGVIFLQDWAHESVFEIWDTARLGAPPALENTLMNGTNTFDCSAS 241
Query: 197 PVTNCTSQG--FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTD 254
NC G F L G Y LR++N ++ F I H LTV+ D P+ TD
Sbjct: 242 TDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTD 301
Query: 255 TIFIGPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLT 314
T+ IG GQ +Y D IV N ++R + +T T
Sbjct: 302 TLLIGIGQ-------------RY--------DVIVEANAAADNYWIRGN----WGTTCST 336
Query: 315 NVPAINATEVTNTFSDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGA 374
N A NAT + RY + S+ +V P TC +
Sbjct: 337 NNEAANATGIL-------------RYDSS-------SIANPTSVGTTPRGTCED------ 370
Query: 375 AMNNISFVMPTTALLQAHY----YKISGVFTDDFPAKPPIAFNYTGNYTG---------T 421
++ ++P AL Y ++S FT+ F +T N + T
Sbjct: 371 --EPVASLVPHLALDVGGYSLVDEQVSSAFTN--------YFTWTINSSSLLLDWSSPTT 420
Query: 422 LQTTNGTRLYRLAYN-----------STVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGS 470
L+ N ++ YN V V++ T HP HLHG +FF V + +
Sbjct: 421 LKIFNNETIFPTEYNVVALEQTNANEEWVVYVIEDLTGFGIW-HPIHLHGHDFFIVAQET 479
Query: 471 GNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMA 530
F+ ++ P KFNLV+P R+ ++P G+ AI F+ DNPG W LHCH+ H S GL M
Sbjct: 480 DVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQ 539
Query: 531 FV 532
FV
Sbjct: 540 FV 541
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 188 bits (477), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 158/542 (29%), Positives = 239/542 (44%), Gaps = 101/542 (18%)
Query: 24 RHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVT-IHWHG 82
R Y +V + +T ++S +T NG PGP + A DN+I+ VTN++++N T IHWHG
Sbjct: 68 REYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHG 127
Query: 83 VRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL 141
+RQL + YDG +TQCPI PG + Y F +T Q GT +H+H S + G ++I
Sbjct: 128 IRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIIN 186
Query: 142 PKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDA-----HTINGHPG 196
+ Y D++ ++F + W + I ++G P + + +T +
Sbjct: 187 GPATADY-----DEDVGVIFLQDWAHESVFEIWDTARLGAPPALENTLMNGTNTFDCSAS 241
Query: 197 PVTNCTSQG--FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTD 254
NC G F L G Y LR++N ++ F I H LTV+ D P+ TD
Sbjct: 242 TDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTD 301
Query: 255 TIFIGPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLT 314
T+ IG GQ +Y D IV N ++R + +T T
Sbjct: 302 TLLIGIGQ-------------RY--------DVIVEANAAADNYWIRGN----WGTTCST 336
Query: 315 NVPAINATEVTNTFSDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGA 374
N A NAT + RY + S+ +V P TC +
Sbjct: 337 NNEAANATGIL-------------RYDSS-------SIANPTSVGTTPRGTCED------ 370
Query: 375 AMNNISFVMPTTALLQAHY----YKISGVFTDDFPAKPPIAFNYTGNYTG---------T 421
++ ++P AL Y ++S FT+ F +T N + T
Sbjct: 371 --EPVASLVPHLALDVGGYSLVDEQVSSAFTN--------YFTWTINSSSLLLDWSSPTT 420
Query: 422 LQTTNGTRLYRLAYN-----------STVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGS 470
L+ N ++ YN V V++ T HP HLHG +FF V + +
Sbjct: 421 LKIFNNETIFPTEYNVVALEQTNANEEWVVYVIEDLTGFGIW-HPIHLHGHDFFIVAQET 479
Query: 471 GNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMA 530
F+ ++ P KFNLV+P R+ ++P G+ AI F+ DNPG W LHCH+ H S G+ M
Sbjct: 480 DVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGMAMQ 539
Query: 531 FV 532
FV
Sbjct: 540 FV 541
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 156/525 (29%), Positives = 234/525 (44%), Gaps = 75/525 (14%)
Query: 27 NFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-----YNVTIHWH 81
+ T+ ++T +++ V NG FPGP + + DN + V +++ TIHWH
Sbjct: 7 DLTISNADVTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWH 66
Query: 82 GVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRATVHGAIVIL 141
G+ Q T W DGPA++ QCPI G S++Y+FT+ Q GT +H+H+S +++
Sbjct: 67 GLFQHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVV 126
Query: 142 PKRSVPYP--FPKADKEKIIVFGEWWKADVEAVINQATQMGVA-PNVSDAHTINGHPGPV 198
S PY + D +I +W+ A ++G A P +D+ ING
Sbjct: 127 YDPSDPYASMYDVDDDTTVITLSDWYHT--------AAKLGPAFPPNADSVLINGLGRFA 178
Query: 199 TNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFI 258
S + VE K Y R+V+ + + F I GHN+T++EVD +P + D+I I
Sbjct: 179 GGNASDLAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQI 238
Query: 259 GPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPA 318
Q + +L A + + Y I P TI + A LRY G P
Sbjct: 239 FASQRYSFVLNATQSVDNYWIRAIPNTGTIDTTGGLNS-AILRYSGADIVD-------PT 290
Query: 319 INA-TEVTNTFSDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMN 377
NA T V +L L+S P P+ L + + + NGT +N
Sbjct: 291 ANATTSVIPLVETDLVPLDSPAAPGD-PVVGGVDLAMNLDFSF-------NGTNF--FIN 340
Query: 378 NISFVMPTTALLQAHYYKISGV--FTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAY 435
N + + PT +L +SG +D P TG+ +Y L
Sbjct: 341 NETLIPPTVPVL---LQILSGAQSASDLLP-------------TGS--------VYTLPL 376
Query: 436 NSTVQLVLQGTTVIAPEN-----HPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVER 490
NST++L TTV N HP HLHG + F+V + +G+ D +N V+PV R
Sbjct: 377 NSTIELSFPITTVNGVTNAPGAPHPFHLHG-HAFSVVRSAGSSD-------YNYVNPVRR 428
Query: 491 NTISVPTAGWTA-IRFRADNPGVWFLHCHLEVHTSWGLKMAFVVD 534
+T+S G IRF DN G WFLHCH++ H G + F D
Sbjct: 429 DTVSTGNPGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVFAED 473
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 155/521 (29%), Positives = 222/521 (42%), Gaps = 71/521 (13%)
Query: 27 NFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDN----VIVRVTNHVKYNVT-IHWH 81
+ TV N+ ++ + VN FP P + DN ++ ++TNH T IHWH
Sbjct: 7 DLTVTNANIVPDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWH 66
Query: 82 GVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVI 140
G Q T W DGPA+I QCPI G S++Y+F + GQ GT +H+H+S + G V+
Sbjct: 67 GFFQKGTNWADGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 141 L-PKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQMGVA-PNVSDAHTINGHPGPV 198
P + D+ +I +W+ A ++G P +D+ ING
Sbjct: 127 YDPNDPHANLYDVDDESTVITLADWYHV--------AAKLGPRFPKGADSTLINGLGRST 178
Query: 199 TNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFI 258
+ T+ + V GK Y R+V+ + + F I H LTV+E D T+P D+I I
Sbjct: 179 STPTADLAVISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQI 238
Query: 259 GPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPA 318
Q + +L A++ + Y I +P T + V A LRY P
Sbjct: 239 FAAQRYSFVLNANQDVDNYWIRANPNFGTTGFADGVNS-AILRYDDADPVE-------PV 290
Query: 319 INATEVTNTFSDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNN 378
N T T +L L S P P L L MA +GT +N
Sbjct: 291 TNQTGTTLLLETDLHPLTSMPVPGN-PTQGGADLNLNMAFNF-------DGTNF--FING 340
Query: 379 ISFVMPTTALLQAHYYKISGVFT--DDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYN 436
SF PT +L ISG T D P+ +Y L N
Sbjct: 341 ESFTPPTVPVL---LQIISGANTAQDLLPSG---------------------SVYSLPSN 376
Query: 437 STVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTIS-- 494
S++++ TT HP HLHG + FAV + +G+ +N DPV R+ +S
Sbjct: 377 SSIEITFPATTAAPGAPHPFHLHG-HVFAVVRSAGS-------TSYNYDDPVWRDVVSTG 428
Query: 495 VPTAGWTA-IRFRADNPGVWFLHCHLEVHTSWGLKMAFVVD 534
P AG IRF+ DNPG WFLHCH++ H G + D
Sbjct: 429 TPQAGDNVTIRFQTDNPGPWFLHCHIDFHLDAGFAVVMAED 469
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 147/506 (29%), Positives = 214/506 (42%), Gaps = 71/506 (14%)
Query: 41 SKSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPA 95
S+ + VN FP P + + D NVI +TNH T IHWHG Q T W DGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL----PKRSVPYPF 150
++ QCPI G +++Y+F + Q GT +H+H+S + G IV+ P +S+ +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPQDPHKSL---Y 137
Query: 151 PKADKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHV 210
D +I +W+ + A ++G +DA ING + + + V
Sbjct: 138 DVDDDSTVITLADWY--------HLAAKVGSPVPTADATLINGLGRSIDTLNADLAVITV 189
Query: 211 ESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTA 270
GK Y R+V+ + + F I GH+LTV+E DS KP D+I I Q + +L A
Sbjct: 190 TKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQIFAAQRYSFVLNA 249
Query: 271 DKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSD 330
D+ +G Y I P T V A LRY G TT
Sbjct: 250 DQDVGNYWIRALPNSGTRNFDGGVNS-AILRYDGAAPVEPTT------------------ 290
Query: 331 NLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQ 390
+ P+ PL S L T+ P + P G + N++F
Sbjct: 291 -------SQTPSTNPLV--ESALTTLEGTAAPGSPAPGGVDLAL---NMAFG------FA 332
Query: 391 AHYYKISGV-FTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVI 449
+ I+G FT P P+ +Y L N+ +++ L T
Sbjct: 333 GGKFTINGASFT---PPTVPVLLQILSGAQSAQDLLPSGSVYSLPANADIEISLPATAAA 389
Query: 450 APENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTA-IRFRAD 508
HP HLHG F AV + +G+ +N +PV R+ +S + G IRFR D
Sbjct: 390 PGFPHPFHLHGHTF-AVVRSAGS-------STYNYENPVYRDVVSTGSPGDNVTIRFRTD 441
Query: 509 NPGVWFLHCHLEVHTSWGLKMAFVVD 534
NPG WFLHCH++ H G + D
Sbjct: 442 NPGPWFLHCHIDFHLEAGFAVVMAED 467
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 144/503 (28%), Positives = 209/503 (41%), Gaps = 65/503 (12%)
Query: 41 SKSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPA 95
S+ + VN FP P + + D NVI +TNH T IHWHG Q T W DGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL-PKRSVPYPFPKA 153
++ QCPI G +++Y+F + Q GT +H+H+S + G IV+ P +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVD 140
Query: 154 DKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESG 213
D +I +W+ + A ++G +DA ING + + V G
Sbjct: 141 DDSTVITLADWY--------HLAAKVGAPVPTADATLINGLGRSAATLAADLAVITVTKG 192
Query: 214 KTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKK 273
K Y R+V+ + + F I GH+LTV+E DS KP D++ I Q + +L AD+
Sbjct: 193 KRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQD 252
Query: 274 IGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLR 333
+ Y I P T T A LRY G TT
Sbjct: 253 VDNYWIRALPNSGTQNFAGG-TNSAILRYDGAAPVEPTT--------------------- 290
Query: 334 SLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHY 393
+ P+ PL S L T+ P + P G + N++F
Sbjct: 291 ----SQTPSTNPLV--ESALTTLKGTAAPGSPTPGGVDLAL---NMAFG------FAGGN 335
Query: 394 YKISGV-FTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPE 452
+ I+G FT P P+ +Y L N+ +++ L T
Sbjct: 336 FTINGASFT---PPTVPVLLQILSGAQSAADLLPAGSVYSLPANADIEISLPATAAAPGF 392
Query: 453 NHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTA-IRFRADNPG 511
HP HLHG + FAV + +G+ +N +PV R+ +S G IRFR DNPG
Sbjct: 393 PHPFHLHG-HVFAVVRSAGS-------STYNYANPVYRDVVSTGAPGDNVTIRFRTDNPG 444
Query: 512 VWFLHCHLEVHTSWGLKMAFVVD 534
WFLHCH++ H G + D
Sbjct: 445 PWFLHCHIDFHLEAGFAVVMAED 467
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 144/503 (28%), Positives = 209/503 (41%), Gaps = 65/503 (12%)
Query: 41 SKSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPA 95
S+ + VN FP P + + D NVI +TNH T IHWHG Q T W DGPA
Sbjct: 21 SRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL-PKRSVPYPFPKA 153
++ QCPI G +++Y+F + Q GT +H+H+S + G IV+ P +
Sbjct: 81 FVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHASLYDVD 140
Query: 154 DKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESG 213
D +I +W+ + A ++G +DA ING + + V G
Sbjct: 141 DDSTVITLADWY--------HLAAKVGAPVPTADATLINGLGRSAATLAADLAVITVTKG 192
Query: 214 KTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKK 273
K Y R+V+ + + F I GH+LTV+E DS KP D++ I Q + +L AD+
Sbjct: 193 KRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFAAQRYSFVLNADQD 252
Query: 274 IGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLR 333
+ Y I P T T A LRY G TT
Sbjct: 253 VDNYWIRALPNSGTQNFAGG-TNSAILRYDGAAPVEPTT--------------------- 290
Query: 334 SLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHY 393
+ P+ PL S L T+ P + P G + N++F
Sbjct: 291 ----SQTPSTNPLV--ESALTTLKGTAAPGSPTPGGVDLAL---NMAFG------FAGGN 335
Query: 394 YKISGV-FTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPE 452
+ I+G FT P P+ +Y L N+ +++ L T
Sbjct: 336 FTINGASFT---PPTVPVLLQILSGAQSAADLLPAGSVYSLPANADIEISLPATAAAPGF 392
Query: 453 NHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTA-IRFRADNPG 511
HP HLHG + FAV + +G+ +N +PV R+ +S G IRFR DNPG
Sbjct: 393 PHPFHLHG-HVFAVVRSAGS-------STYNYANPVYRDVVSTGAPGDNVTIRFRTDNPG 444
Query: 512 VWFLHCHLEVHTSWGLKMAFVVD 534
WFLHCH++ H G + D
Sbjct: 445 PWFLHCHIDFHLEAGFAVVMAED 467
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 155/504 (30%), Positives = 220/504 (43%), Gaps = 64/504 (12%)
Query: 41 SKSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPA 95
S+ V VNG PGP + D NVI +TNH T IHWHG Q T W DGPA
Sbjct: 21 SRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWADGPA 80
Query: 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL-PKRSVPYPFPKA 153
+I QCPI G S++Y+F + Q GT +H+H+S + G V+ P +
Sbjct: 81 FINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLYDVD 140
Query: 154 DKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESG 213
+ + +I +W+ V A + A +G +DA ING + T+ + V G
Sbjct: 141 NDDTVITLVDWYH--VAAKLGPAFPLG-----ADATLINGKGRSPSTTTADLSVISVTPG 193
Query: 214 KTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKK 273
K Y R+V+ + + F I GHN+T++E DS T P D+I I Q + +L A++
Sbjct: 194 KRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLEANQA 253
Query: 274 IGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLR 333
+ Y I +P + + A LRY G A TT EV NL
Sbjct: 254 VDNYWIRANPNFGNVGFTGGINS-AILRYDGAAAVEPTTTQTTSTAPLNEV------NLH 306
Query: 334 SLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHY 393
L + P P+ L + MA N GT +N SF PT +L
Sbjct: 307 PLVATAVPGS-PVAGGVDLAINMAFNFN-------GTNF--FINGASFTPPTVPVL---L 353
Query: 394 YKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPEN 453
ISG N L + + +Y L N+ +++ T
Sbjct: 354 QIISGA----------------QNAQDLLPSGS---VYSLPSNADIEISFPATAAAPGAP 394
Query: 454 HPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISV--PTAGWTA-IRFRADNP 510
HP HLHG + FAV + +G+ +N +P+ R+ +S P AG IRFR DNP
Sbjct: 395 HPFHLHG-HAFAVVRSAGS-------TVYNYDNPIFRDVVSTGTPAAGDNVTIRFRTDNP 446
Query: 511 GVWFLHCHLEVHTSWGLKMAFVVD 534
G WFLHCH++ H G + F D
Sbjct: 447 GPWFLHCHIDFHLEAGFAVVFAED 470
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/508 (30%), Positives = 223/508 (43%), Gaps = 72/508 (14%)
Query: 41 SKSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPA 95
S+ V VNG PGP + D NVI +TNH T IHWHG Q T W DGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL-PKRSVPYPFPKA 153
+I QCPI PG S++Y+F + Q GT +H+H+S + G V+ P +
Sbjct: 81 FINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 154 DKEKIIVFGEWWKADVEAVINQATQMGVA-PNVSDAHTINGHPGPVTNCTSQGFTLHVES 212
+ + +I +W+ A ++G P +DA ING ++ ++ + V
Sbjct: 141 NDDTVITLADWYHT--------AAKLGPRFPGGADATLINGKGRAPSDSVAELSVIKVTK 192
Query: 213 GKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADK 272
GK Y R+V+ + N F I GHNLT++EVDS ++P + D+I I Q + +L A++
Sbjct: 193 GKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQ 252
Query: 273 KIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTT--LTNVPAINATEVTNTFSD 330
+ Y I +P V + A LRY G A TT T+V +N +
Sbjct: 253 AVDNYWIRANPNFGN-VGFDGGINSAILRYDGAPAVEPTTNQTTSVKPLNEVD------- 304
Query: 331 NLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTT-ALL 389
L L S P P + + MA N NG SFV PT LL
Sbjct: 305 -LHPLVSTPVPGS-PSSGGVDKAINMAFNFNGSNFFINGA---------SFVPPTVPVLL 353
Query: 390 QAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVI 449
Q +G T +G+ +Y L N+++++ T
Sbjct: 354 QI----------------------LSGAQTAQDLLPSGS-VYVLPSNASIEISFPATAAA 390
Query: 450 APENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTIS--VPTAGWTA-IRFR 506
HP HLHG FAV + +G+ +N +P+ R+ +S P AG IRF
Sbjct: 391 PGAPHPFHLHGHT-FAVVRSAGS-------TVYNYDNPIFRDVVSTGTPAAGDNVTIRFD 442
Query: 507 ADNPGVWFLHCHLEVHTSWGLKMAFVVD 534
+NPG WFLHCH++ H G + D
Sbjct: 443 TNNPGPWFLHCHIDFHLEGGFAVVMAED 470
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/508 (30%), Positives = 223/508 (43%), Gaps = 72/508 (14%)
Query: 41 SKSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPA 95
S+ V VNG PGP + D NVI +TNH T IHWHG Q T W DGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPA 80
Query: 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL-PKRSVPYPFPKA 153
+I QCPI PG S++Y+F + Q GT +H+H+S + G V+ P +
Sbjct: 81 FINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 154 DKEKIIVFGEWWKADVEAVINQATQMGVA-PNVSDAHTINGHPGPVTNCTSQGFTLHVES 212
+ + +I +W+ A ++G P +DA ING ++ ++ + V
Sbjct: 141 NDDTVITLADWYHT--------AAKLGPRFPGGADATLINGKGRAPSDSVAELSVIKVTK 192
Query: 213 GKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADK 272
GK Y R+V+ + N F I GHNLT++EVDS ++P + D+I I Q + +L A++
Sbjct: 193 GKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFVLDANQ 252
Query: 273 KIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTT--LTNVPAINATEVTNTFSD 330
+ Y I +P V + A LRY G A TT T+V +N +
Sbjct: 253 AVDNYWIRANPNFGN-VGFDGGINSAILRYDGAPAVEPTTNQTTSVKPLNEVD------- 304
Query: 331 NLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTT-ALL 389
L L S P P + + MA N NG SFV PT LL
Sbjct: 305 -LHPLVSTPVPG-APSSGGVDKAINMAFNFNGSNFFINGA---------SFVPPTVPVLL 353
Query: 390 QAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVI 449
Q +G T +G+ +Y L N+++++ T
Sbjct: 354 QI----------------------LSGAQTAQDLLPSGS-VYVLPSNASIEISFPATAAA 390
Query: 450 APENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTIS--VPTAGWTA-IRFR 506
HP HLHG FAV + +G+ +N +P+ R+ +S P AG IRF
Sbjct: 391 PGAPHPFHLHGHT-FAVVRSAGS-------TVYNYDNPIFRDVVSTGTPAAGDNVTIRFD 442
Query: 507 ADNPGVWFLHCHLEVHTSWGLKMAFVVD 534
+NPG WFLHCH++ H G + D
Sbjct: 443 TNNPGPWFLHCHIDFHLEGGFAVVMAED 470
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 144/505 (28%), Positives = 223/505 (44%), Gaps = 66/505 (13%)
Query: 41 SKSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPA 95
S+ V VNG PGP + + D NVI +TN T +HWHG Q T W DGPA
Sbjct: 21 SRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWADGPA 80
Query: 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHIS--WLRATVHGAIVILPKRSVPYPFPKA 153
++ QCPI G S++Y+F+ Q GT +H+H+S + +V P +
Sbjct: 81 FVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDPNDPSANLYDVD 140
Query: 154 DKEKIIVFGEWWKADVEAVINQATQMGVA-PNVSDAHTINGHPGPVTNCTSQGFTLHVES 212
+ +I +W+ A Q G A P +DA ING ++ ++ + V +
Sbjct: 141 NLNTVITLTDWYHT--------AAQNGPAKPGGADATLINGQGRGPSSPSADLAVISVTA 192
Query: 213 GKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADK 272
GK Y R+V+ + + F I GH +T+++VDS +P I I Q + +L A++
Sbjct: 193 GKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQIYAAQRYSFILNANQ 252
Query: 273 KIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNL 332
+ Y I +P + N + A LRY G A TT + ++ + TN L
Sbjct: 253 AVNNYWIRANPNQGNVGFTNGINS-AILRYSGAAATQPTT-SQTSSVQPLDQTN-----L 305
Query: 333 RSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAH 392
L + P P+ +L + A N GT ++ SFV PT +L
Sbjct: 306 HPLTATAVPGS-PVAGGVNLAINQAFNFN-------GTN--HFVDGASFVPPTVPVLSQ- 354
Query: 393 YYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPE 452
+SG A+ +G +Y L ++ +++ T+ A
Sbjct: 355 --IVSG-------AQSAADLLASG------------LVYSLPSDANIEISFPATSAAAGG 393
Query: 453 NHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWT---AIRFRADN 509
HP HLHG + FAV + +G+ +N DP+ R+T+S T IRF+ +N
Sbjct: 394 PHPFHLHG-HAFAVVRSAGS-------TTYNYNDPIFRDTVSTGTPAANDNVTIRFKTNN 445
Query: 510 PGVWFLHCHLEVHTSWGLKMAFVVD 534
PG WFLHCH++ H G + F D
Sbjct: 446 PGPWFLHCHIDFHLEAGFAVVFAQD 470
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/519 (27%), Positives = 228/519 (43%), Gaps = 70/519 (13%)
Query: 28 FTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-----YNVTIHWHG 82
T+ N++ +++ + VNG GP + ++DN + V N + +IHWHG
Sbjct: 9 MTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHG 67
Query: 83 VRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL 141
+ Q T W DG + QCPI PG +++Y FT G GT +H+H + G +VI
Sbjct: 68 LFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIY 127
Query: 142 PKRSVPYP--FPKADKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVT 199
P+ + + D+ II +W+ ++ A DA ING V
Sbjct: 128 DDND-PHAALYDEDDENTIITLADWYHIPAPSIQGAAQ--------PDATLINGKGRYVG 178
Query: 200 NCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIG 259
++ ++VE GK Y +R+++ + + F I GH LT++EVD T+P D + I
Sbjct: 179 GPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIF 238
Query: 260 PGQTTNALLTADKKIGKYLITISPFMD-TIVAVNNVTGI--AFLRYKGTVAFSSTTLTNV 316
GQ + +L A++ + Y I P +A G+ A LRY G TT N
Sbjct: 239 TGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSAN- 297
Query: 317 PAINATEVTNTFSDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAM 376
PA++ H+L ++P A P GAA
Sbjct: 298 ----------------------PNPAQLNEADLHAL-------IDPAA--PGIPTPGAAD 326
Query: 377 NNISFVMPTTALLQAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYN 436
N+ F + + I+G + P+ P + +G + G+ +Y L N
Sbjct: 327 VNLRFQLG----FSGGRFTINGTAYES-PSVPTLLQIMSGAQSANDLLPAGS-VYELPRN 380
Query: 437 STVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVP 496
V+LV+ + P HP HLHG + F+V + +G+ +N V+PV+R+ +S+
Sbjct: 381 QVVELVVPAGVLGGP--HPFHLHG-HAFSVVRSAGS-------STYNFVNPVKRDVVSLG 430
Query: 497 TAG-WTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVD 534
G IRF DNPG WF HCH+E H GL + F D
Sbjct: 431 VTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAED 469
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/519 (27%), Positives = 228/519 (43%), Gaps = 70/519 (13%)
Query: 28 FTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-----YNVTIHWHG 82
T+ N++ +++ + VNG GP + ++DN + V N + +IHWHG
Sbjct: 9 MTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHG 67
Query: 83 VRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL 141
+ Q T W DG + QCPI PG +++Y FT G GT +H+H + G +VI
Sbjct: 68 LFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIY 127
Query: 142 PKRSVPYP--FPKADKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVT 199
P+ + + D+ II +W+ ++ A DA ING V
Sbjct: 128 DDND-PHAALYDEDDENTIITLADWYHIPAPSIQGAAQ--------PDATLINGKGRYVG 178
Query: 200 NCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIG 259
++ ++VE GK Y +R+++ + + F I GH LT++EVD T+P D + I
Sbjct: 179 GPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIF 238
Query: 260 PGQTTNALLTADKKIGKYLITISPFMD-TIVAVNNVTGI--AFLRYKGTVAFSSTTLTNV 316
GQ + +L A++ + Y I P +A G+ A LRY G TT N
Sbjct: 239 TGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSAN- 297
Query: 317 PAINATEVTNTFSDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAM 376
PA++ H+L ++P A P GAA
Sbjct: 298 ----------------------PNPAQLNEADLHAL-------IDPAA--PGIPTPGAAD 326
Query: 377 NNISFVMPTTALLQAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYN 436
N+ F + + I+G + P+ P + +G + G+ +Y L N
Sbjct: 327 VNLRFQLG----FSGGRFTINGTAYES-PSVPTLLQIMSGAQSANDLLPAGS-VYELPRN 380
Query: 437 STVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVP 496
V+LV+ + P HP HLHG + F+V + +G+ +N V+PV+R+ +S+
Sbjct: 381 QVVELVVPAGVLGGP--HPFHLHG-HAFSVVRSAGS-------STYNFVNPVKRDVVSLG 430
Query: 497 TAG-WTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVD 534
G IRF DNPG WF HCH+E H GL + F D
Sbjct: 431 VTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAED 469
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 151/507 (29%), Positives = 221/507 (43%), Gaps = 70/507 (13%)
Query: 41 SKSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPA 95
S+ V VNG PGP + D NVI +TNH T +HWHG Q T W DGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL-PKRSVPYPFPKA 153
+I QCPI PG S++Y+F + Q GT +H+H+S + G V+ P +
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 154 DKEKIIVFGEWWKADVEAVINQATQMGVA-PNVSDAHTINGHPGPVTNCTSQGFTLHVES 212
+ + +I +W+ A ++G P +DA ING ++ +++ + V
Sbjct: 141 NDDTVITLADWYHT--------AAKLGPRFPAGADATLINGKGRAPSDTSAELSVIKVTK 192
Query: 213 GKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADK 272
GK R+V+ + + F I GHNLT++EVDSS ++P D+I I Q + +L A++
Sbjct: 193 GKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFAAQRYSFVLNANQ 252
Query: 273 KIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNL 332
+ Y I +P V N A LRY G A TT EV NL
Sbjct: 253 AVDNYWIRANPNFGN-VGFNGGINSAILRYDGAPAVEPTTNQTTSVKPLNEV------NL 305
Query: 333 RSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAH 392
L S P P + + MA NG+ +N SFV P+ +L
Sbjct: 306 HPLVSTPVPGS-PSSGGVDKAINMAFNF-------NGSNF--FINGASFVPPSVPVL--- 352
Query: 393 YYKISGVFT--DDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIA 450
+SG T D P+ + L N+++++ T
Sbjct: 353 LQILSGAQTAQDLLPSG---------------------SVXVLPSNASIEISFPATAAAP 391
Query: 451 PENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTIS--VPTAGWTA-IRFRA 507
HP HLHG FAV + +G+ +N +P+ R+ +S P AG IRF
Sbjct: 392 GAPHPFHLHGHT-FAVVRSAGS-------TVYNYSNPIFRDVVSTGTPAAGDNVTIRFLT 443
Query: 508 DNPGVWFLHCHLEVHTSWGLKMAFVVD 534
+NPG WFLHCH++ H G + D
Sbjct: 444 NNPGPWFLHCHIDFHLEGGFAVVQAED 470
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 152/508 (29%), Positives = 224/508 (44%), Gaps = 72/508 (14%)
Query: 41 SKSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPA 95
S+ V VNG PGP + D NVI +TNH T +HWHG Q T W DGPA
Sbjct: 21 SRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWADGPA 80
Query: 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL-PKRSVPYPFPKA 153
+I QCPI PG S++Y+F + Q GT +H+H+S + G V+ P +
Sbjct: 81 FINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVD 140
Query: 154 DKEKIIVFGEWWKADVEAVINQATQMGVA-PNVSDAHTINGHPGPVTNCTSQGFTLHVES 212
+ + I +W+ A ++G A PN +D+ ING ++ ++Q + V
Sbjct: 141 NDDTTITLADWYHT--------AAKLGPAFPNGADSTLINGKGRAPSDSSAQLSVVSVTK 192
Query: 213 GKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADK 272
GK R+V+ + + F I GHN T++E DS ++P TD+I I Q + L A++
Sbjct: 193 GKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQRYSFTLNANQ 252
Query: 273 KIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSD-N 331
+ Y I +P V N A LRY G A TT N + T ++ N
Sbjct: 253 AVDNYWIRANPNFGN-VGFNGGINSAILRYDGAPAVEPTT-------NQSTSTQPLNETN 304
Query: 332 LRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQA 391
L L S P P + MA NG+ +N SF P+ +L
Sbjct: 305 LHPLVSTPVPGS-PAAGGVDKAINMAFNF-------NGSNF--FINGASFTPPSVPVL-- 352
Query: 392 HYYKISGVFT--DDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVI 449
+SG T D P +G++ T L N+++++ T
Sbjct: 353 -LQILSGAQTAQDLLP-------------SGSVXT--------LPSNASIEISFPATAAA 390
Query: 450 APENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTIS--VPTAGWTA-IRFR 506
HP HLHG + FAV + +G+ +N +P+ R+ +S P AG IRF
Sbjct: 391 PGAPHPFHLHG-HVFAVVRSAGS-------TVYNYSNPIFRDVVSTGTPAAGDNVTIRFL 442
Query: 507 ADNPGVWFLHCHLEVHTSWGLKMAFVVD 534
+NPG WFLHCH++ H G + D
Sbjct: 443 TNNPGPWFLHCHIDFHLEGGFAVVQAED 470
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 154/524 (29%), Positives = 228/524 (43%), Gaps = 73/524 (13%)
Query: 40 ASKSIVTVNGKFPGPTLHAREDD----NVIVRVTN-HVKYNVTIHWHGVRQLRTGWYDGP 94
++S VT G P + DD NVI ++T+ +++ +IHWHG Q T DGP
Sbjct: 41 GARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGP 100
Query: 95 AYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL-PKRSVPYPFPK 152
A++ QCPI P +S+VY+F + GQ GT +H+H+S + GA V+ P +
Sbjct: 101 AFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDV 160
Query: 153 ADKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTS-QGFTLHVE 211
D +I +W+ + + + A D ING N ++ Q + V+
Sbjct: 161 DDASTVITIADWYHSLSTVLFPNPNKAPPA---PDTTLINGLGRNSANPSAGQLAVVSVQ 217
Query: 212 SGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTAD 271
SGK Y RIV+ + F I GH +TV+EVD +P D++ I GQ + ++ A+
Sbjct: 218 SGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEAN 277
Query: 272 KKIGKYLITISPFMDTIVAVNNVTG---IAFLRYKG-TVAFSSTTLTNVPAINATEVTNT 327
+ +G Y I +P N TG A RY+G VA +T+ + A+N
Sbjct: 278 QAVGNYWIRANPSN----GRNGFTGGINSAIFRYQGAAVAEPTTSQNSGTALNEA----- 328
Query: 328 FSDNLRSLNSKRYPAK-VPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTT 386
NL L + P VP D +L L + N T +N F+ PT
Sbjct: 329 ---NLIPLINPGAPGNPVPGGADINLNLRIGR---------NATTADFTINGAPFIPPTV 376
Query: 387 ALLQAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGT 446
+L +SGV T G + L N +++ + G
Sbjct: 377 PVL---LQILSGV-------------------TNPNDLLPGGAVISLPANQVIEISIPGG 414
Query: 447 TVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTA-IRF 505
NHP HLHG NF V + G+ +N V+PV R+ +S+ G RF
Sbjct: 415 -----GNHPFHLHGHNFDVV-RTPGS-------SVYNYVNPVRRDVVSIGGGGDNVTFRF 461
Query: 506 RADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKGPNESLIPPPSD 549
DNPG WFLHCH++ H GL + F D P + I P D
Sbjct: 462 VTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNIPIANAISPAWD 505
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 137/518 (26%), Positives = 213/518 (41%), Gaps = 66/518 (12%)
Query: 27 NFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDD----NVIVRVTNHVKYNVT-IHWH 81
+ T+ ++ ++ V VNG P P + + D NVI ++TNH + IHWH
Sbjct: 7 DLTLTNAQVSPDGFAREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWH 66
Query: 82 GVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVI 140
G Q T W DGPA++ QCPI G S++Y+F + Q GT +H+H+S + G V+
Sbjct: 67 GFFQQGTNWADGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 141 L-PKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQMGVA-PNVSDAHTINGHPGPV 198
P + + + +I +W+ A ++G P SD+ ING
Sbjct: 127 YDPNDPHASLYDIDNDDTVITLADWYHV--------AAKLGPRFPFGSDSTLINGLGRTT 178
Query: 199 TNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFI 258
S + V GK Y R+V+ + + F I H +T++E DS T+P + D+I I
Sbjct: 179 GIAPSDLAVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQI 238
Query: 259 GPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPA 318
Q + +L A + + Y I +P + A LRY G T++ P
Sbjct: 239 FAAQRYSFVLDASQPVDNYWIRANPAFGNTGFAGGINS-AILRYDGAPEIEPTSVQTTPT 297
Query: 319 INATEVTNTFSDNLRSLNSKRYPAK-VPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMN 377
EV +L L+ P P VD L L NGT +N
Sbjct: 298 KPLNEV------DLHPLSPMPVPGSPEPGGVDKPLNLVFNF---------NGTNF--FIN 340
Query: 378 NISFVMPTTALLQAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNS 437
+ +FV P+ P+ ++ L NS
Sbjct: 341 DHTFVPPSV----------------------PVLLQILSGAQAAQDLVPEGSVFVLPSNS 378
Query: 438 TVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPT 497
++++ T HP HLHG + FAV + +G+ +N +P+ R+ +S
Sbjct: 379 SIEISFPATANAPGFPHPFHLHG-HAFAVVRSAGS-------SVYNYDNPIFRDVVSTGQ 430
Query: 498 AGWTA-IRFRADNPGVWFLHCHLEVHTSWGLKMAFVVD 534
G IRF +NPG WFLHCH++ H G + D
Sbjct: 431 PGDNVTIRFETNNPGPWFLHCHIDFHLDAGFAVVMAED 468
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 144/506 (28%), Positives = 213/506 (42%), Gaps = 71/506 (14%)
Query: 42 KSIVTVNGKFPGPTLHAREDDNVIVRVTNHV-----KYNVTIHWHGVRQLRTGWYDGPAY 96
+ V G FPGP + DN + N + + +IHWHG Q T W DGPA+
Sbjct: 23 RPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAF 82
Query: 97 ITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVIL-PKRSVPYPFPKAD 154
ITQCPI G S+ YNF + G GT +H+H++ + G V+ P + D
Sbjct: 83 ITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDD 142
Query: 155 KEKIIVFGEWWKADVEAVINQATQMGVAPNV-SDAHTINGHPGPVTNCTSQGFT-LHVES 212
II +W+ A +MG + +D+ I+G N + + + VE
Sbjct: 143 DTTIITLADWYHV-------LAKEMGAGGAITADSTLIDGLGRTHVNVAAVPLSVITVEV 195
Query: 213 GKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADK 272
GK Y +R+V+ + + F I GH++T++E D ++ D I I Q + +L A++
Sbjct: 196 GKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQ 255
Query: 273 KIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNL 332
+G Y I +P + A LRY G +TT V + +L
Sbjct: 256 PVGNYWIRANPNSGG-EGFDGGINSAILRYDG-----ATTADPVTVASTVHTKCLIETDL 309
Query: 333 RSLNSKRYPAKVPL-TVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQA 391
L+ P D +L L++ A C N +N +SF PT +L
Sbjct: 310 HPLSRNGVPGNPHQGGADCNLNLSLGFA------CGN-----FVINGVSFTPPTVPVL-- 356
Query: 392 HYYKISGVFT--DDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVI 449
SG T D P+ I+ L NST+++ L
Sbjct: 357 -LQICSGANTAADLLPSGSVIS---------------------LPSNSTIEIALPAGAAG 394
Query: 450 APENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTA-IRFRAD 508
P HP HLHG + FAV + + N N D DP+ R+ +S+ G IRF D
Sbjct: 395 GP--HPFHLHGHD-FAVSESASNSTSNYD-------DPIWRDVVSIGGVGDNVTIRFCTD 444
Query: 509 NPGVWFLHCHLEVHTSWGLKMAFVVD 534
NPG WFLHCH++ H G + F D
Sbjct: 445 NPGPWFLHCHIDWHLDAGFAIVFAED 470
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/503 (27%), Positives = 217/503 (43%), Gaps = 55/503 (10%)
Query: 44 IVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPAYITQCPI 102
++ VN K GPT+ A DN+ V V N++K N T +HWHG+RQL + DG +T+CPI
Sbjct: 98 VMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTECPI 157
Query: 103 QP-GQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVILPKRSVPYPFPKADKEKIIV 160
P G Y F T Q GT +H+H S V G I I S+PY +
Sbjct: 158 PPKGGRKTYKFRAT-QYGTSWYHSHFSAQYGNGVVGTIQIDGPASLPYDIDLG----VFP 212
Query: 161 FGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRI 220
+++ + +++ G P SD NG Q + + + GK + LRI
Sbjct: 213 LMDYYYRSADELVHFTQSNGAPP--SDNVLFNGTARHPETGAGQWYNVTLTPGKRHRLRI 270
Query: 221 VNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLIT 280
+N + ++ + GHN+TV+ D F ++F+ GQ + + A+ +G Y
Sbjct: 271 INTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTIDANSPVGNYWFN 330
Query: 281 ISPFMDTIV-AVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFS-DNLRSLNSK 338
++ F D + + NN A RY+G A +P V N DNL
Sbjct: 331 VT-FGDGLCGSSNNKFPAAIFRYQGAPA-------TLPTDQGLPVPNHMCLDNL------ 376
Query: 339 RYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHYYKISG 398
+ + ++T + VN P+ T ++ + T L +K++G
Sbjct: 377 ----------NLTPVVTRSAPVNNFVKRPSNTL------GVTLDIGGTPLF---VWKVNG 417
Query: 399 VFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHL 458
+ KP + + +GN T + N ++ + + + T I HP HL
Sbjct: 418 SAINVDWGKPILDYVMSGN-TSYPVSDNIVQVDAVDQWTYWLIENDPTNPIVSLPHPMHL 476
Query: 459 HGFNFFAVGKGSGN---------FDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509
HG +F +G+ FDP KD + +PV R+ +P GW + F+ DN
Sbjct: 477 HGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKGNNPVRRDVTMLPAGGWLLLAFKTDN 536
Query: 510 PGVWFLHCHLEVHTSWGLKMAFV 532
PG W HCH+ H S GL + F+
Sbjct: 537 PGAWLFHCHIAWHVSGGLSVDFL 559
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 137/505 (27%), Positives = 213/505 (42%), Gaps = 80/505 (15%)
Query: 41 SKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAYITQ 99
S+ ++T NG+FP P + + D V + +TN + N ++H+HG+ Q T DG ++TQ
Sbjct: 21 SRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQ 80
Query: 100 CPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRATVHGAIVILPKRSVPYPFPKADKEKII 159
CPI PG + +YNFT+ GT +H+H + I+ S PY + D+E +
Sbjct: 81 CPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSFPYDY---DEELSL 137
Query: 160 VFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLR 219
EW+ + V + N + A I P + + T V+ TYLLR
Sbjct: 138 SLSEWYH---DLVTDLTKSFMSVYNPTGAEPI---PQNLIVNNTMNLTWEVQPDTTYLLR 191
Query: 220 IVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLI 279
IVN +F I H +TVVE+D T+ TD ++I Q L+ K
Sbjct: 192 IVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDTDKNFA 251
Query: 280 TISPFMDTIVAV----NNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLRSL 335
+ F DT++ V + +++ Y T A +P N + + F D+
Sbjct: 252 IMQKFDDTMLDVIPSDLQLNATSYMVYNKTAA--------LPTQNYVDSIDNFLDDFYLQ 303
Query: 336 NSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALL------ 389
++ + DH ++T+ V ++ NG A NNI++ P L
Sbjct: 304 PYEK--EAIYGEPDH--VITVDVVMD---NLKNGVNY-AFFNNITYTAPKVPTLMTVLSS 355
Query: 390 --QAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTT 447
QA+ +I G + T + L + V++VL
Sbjct: 356 GDQANNSEIYG---------------------------SNTHTFILEKDEIVEIVLNNQD 388
Query: 448 VIAPENHPTHLHGFNF----------FAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPT 497
HP HLHG F A+G+ +FDP+ P P+ R+T+ V
Sbjct: 389 T---GTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPEY--PMRRDTLYVRP 443
Query: 498 AGWTAIRFRADNPGVWFLHCHLEVH 522
IRF+ADNPGVWF HCH+E H
Sbjct: 444 QSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 136/517 (26%), Positives = 204/517 (39%), Gaps = 79/517 (15%)
Query: 42 KSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPAYITQC 100
+ ++ +NG GP + A D V V V N++ N T IHWHG+ Q T +DG +T+C
Sbjct: 55 EKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTEC 114
Query: 101 PIQP-GQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVILPKRSVPYPFPKADKEKI 158
PI P G Y + Q GT +H+H S V G I I S+PY D
Sbjct: 115 PIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPASLPY---DIDLGVF 170
Query: 159 IVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLL 218
+ +++A + V TQ AP SD ING Q + + GK + L
Sbjct: 171 PITDYYYRAADDLV--HFTQNN-APPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRL 227
Query: 219 RIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYL 278
RI+N + + + H +TV+ D D++F+ GQ + ++ A + Y
Sbjct: 228 RILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYW 287
Query: 279 ITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLRSLNSK 338
++ + G A + + AI +
Sbjct: 288 FNVT-------------------FGGQAACGGSLNPHPAAI---------------FHYA 313
Query: 339 RYPAKVPLT-----VDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHY 393
P +P VDH L T+ V + P + V N + + T
Sbjct: 314 GAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTG-TPLFV 372
Query: 394 YKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYN-STVQLVLQGTTVI--- 449
+K++G + KP I + TGN + Y ++ N V V Q T +
Sbjct: 373 WKVNGSDINVDWGKPIIDYILTGNTS-----------YPVSDNIVQVDAVDQWTYWLIEN 421
Query: 450 APEN-----HPTHLHGFNFFAVGKGSG---------NFDPNKDPQKFNLVDPVERNTISV 495
PE HP HLHG +F +G+ FDP D + N +P R+T +
Sbjct: 422 DPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTML 481
Query: 496 PTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFV 532
P GW + FR DNPG W HCH+ H S GL + F+
Sbjct: 482 PAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 136/517 (26%), Positives = 204/517 (39%), Gaps = 79/517 (15%)
Query: 42 KSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPAYITQC 100
+ ++ +NG GP + A D V V V N++ N T IHWHG+ Q T +DG +T+C
Sbjct: 55 EKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTEC 114
Query: 101 PIQP-GQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVILPKRSVPYPFPKADKEKI 158
PI P G Y + Q GT +H+H S V G I I S+PY D
Sbjct: 115 PIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPASLPY---DIDLGVF 170
Query: 159 IVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLL 218
+ +++A + V TQ AP SD ING Q + + GK + L
Sbjct: 171 PITDYYYRAADDLV--HFTQNN-APPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRL 227
Query: 219 RIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYL 278
RI+N + + + H +TV+ D D++F+ GQ + ++ A + Y
Sbjct: 228 RILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYW 287
Query: 279 ITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLRSLNSK 338
++ + G A + + AI +
Sbjct: 288 FNVT-------------------FGGQAACGGSLNPHPAAI---------------FHYA 313
Query: 339 RYPAKVPLT-----VDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHY 393
P +P VDH L T+ V + P + V N + + T
Sbjct: 314 GAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTG-TPLFV 372
Query: 394 YKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYN-STVQLVLQGTTVI--- 449
+K++G + KP I + TGN + Y ++ N V V Q T +
Sbjct: 373 WKVNGSDINVDWGKPIIDYILTGNTS-----------YPVSDNIVQVDAVDQWTYWLIEN 421
Query: 450 APEN-----HPTHLHGFNFFAVGKGSG---------NFDPNKDPQKFNLVDPVERNTISV 495
PE HP HLHG +F +G+ FDP D + N +P R+T +
Sbjct: 422 DPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTML 481
Query: 496 PTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFV 532
P GW + FR DNPG W HCH+ H S GL + F+
Sbjct: 482 PAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 136/517 (26%), Positives = 204/517 (39%), Gaps = 79/517 (15%)
Query: 42 KSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVT-IHWHGVRQLRTGWYDGPAYITQC 100
+ ++ +NG GP + A D V V V N++ N T IHWHG+ Q T +DG +T+C
Sbjct: 55 EKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTEC 114
Query: 101 PIQP-GQSYVYNFTLTGQRGTLLWHAHISWLRAT-VHGAIVILPKRSVPYPFPKADKEKI 158
PI P G Y + Q GT +H+H S V G I I S+PY D
Sbjct: 115 PIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPASLPY---DIDLGVF 170
Query: 159 IVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLL 218
+ +++A + V TQ AP SD ING Q + + GK + L
Sbjct: 171 PITDYYYRAADDLV--HFTQNN-APPFSDNVLINGTAVNPNTGEGQYANVTLTPGKRHRL 227
Query: 219 RIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYL 278
RI+N + + + H +TV+ D D++F+ GQ + ++ A + Y
Sbjct: 228 RILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDASRAPDNYW 287
Query: 279 ITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLRSLNSK 338
++ + G A + + AI +
Sbjct: 288 FNVT-------------------FGGQAACGGSLNPHPAAI---------------FHYA 313
Query: 339 RYPAKVPLT-----VDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHY 393
P +P VDH L T+ V + P + V N + + T
Sbjct: 314 GAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTG-TPLFV 372
Query: 394 YKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYN-STVQLVLQGTTVI--- 449
+K++G + KP I + TGN + Y ++ N V V Q T +
Sbjct: 373 WKVNGSDINVDWGKPIIDYILTGNTS-----------YPVSDNIVQVDAVDQWTYWLIEN 421
Query: 450 APEN-----HPTHLHGFNFFAVGKGSG---------NFDPNKDPQKFNLVDPVERNTISV 495
PE HP HLHG +F +G+ FDP D + N +P R+T +
Sbjct: 422 DPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTML 481
Query: 496 PTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFV 532
P GW + FR DNPG W HCH+ H S GL + F+
Sbjct: 482 PAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 120/258 (46%), Gaps = 27/258 (10%)
Query: 24 RHYNFTVVMTNMTKLCASKSIVTV--NGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWH 81
R ++ ++ T + L + T NG+ P P +H E D+V V VTN TIHWH
Sbjct: 3 REFDLSIEDTRIV-LVGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWH 61
Query: 82 GVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHIS-----WLRATVHG 136
G+ Q T DG + TQ I+PG ++ Y F GT+ +H H++ +R + G
Sbjct: 62 GMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAE-PAGTMWYHCHVNVNEHVTMRG-MWG 119
Query: 137 AIVILPKRSVPYPFPK-ADKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHP 195
+++ PK P P K K+ I++ +W V + N+ + G+ +V D +TIN
Sbjct: 120 PLIVEPKN--PLPIEKTVTKDYILMLSDW----VSSWANKPGEGGIPGDVFDYYTINAKS 173
Query: 196 GPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELF-FKIAGHNLTVVEVDS-SYTKPFKT 253
P T + V+ G LR++ A D + GH + D KP K
Sbjct: 174 FPETQ------PIRVKKGDVIRLRLIGAG--DHVHAIHTHGHISQIAFKDGFPLDKPIKG 225
Query: 254 DTIFIGPGQTTNALLTAD 271
DT+ IGPG+ + +L D
Sbjct: 226 DTVLIGPGERYDVILNMD 243
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 408 PPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHG-FNFFAV 466
P F+Y YT ++ T+ R+ ++L L G H H HG + A
Sbjct: 160 PGDVFDY---YTINAKSFPETQPIRVKKGDVIRLRLIGA---GDHVHAIHTHGHISQIAF 213
Query: 467 GKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWG 526
G F L P++ +T+ + + DNPG+W +H H++ HT+ G
Sbjct: 214 KDG------------FPLDKPIKGDTVLIGPGERYDVILNMDNPGLWMIHDHVDTHTTNG 261
Query: 527 LK 528
K
Sbjct: 262 DK 263
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 26/249 (10%)
Query: 43 SIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPI 102
+++T G FPGPTL R D V + + N + +HWHG+ + D P I
Sbjct: 36 TLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPI--SPKVDDPF----LEI 89
Query: 103 QPGQSYVYNFTLTGQ-RGTLLWHAHI-----SWLRATVHGAIVILPKRSVPYPFPKADKE 156
PG+S+ Y FT+ + GT +H H+ L A + GA+V+ P + +E
Sbjct: 90 PPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDA-IPELREAEE 148
Query: 157 KIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTY 216
++V + A Q G + +NG G + V T
Sbjct: 149 HLLVLKDL-----------ALQGGRPAPHTPMDWMNGKEGDLVLVNGALRPTLVAQKATL 197
Query: 217 LLRIVNAAVNDELFFKIAGHNLTVVEVDSSY-TKPFKTDTIFIGPGQTTNALLTADKKIG 275
LR++NA+ + H L ++ D + +P + + + PG+ L+ K+ G
Sbjct: 198 RLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVRLRKE-G 256
Query: 276 KYLITISPF 284
++L+ P+
Sbjct: 257 RFLLQALPY 265
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 46 TVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPG 105
+ NG+ PGPTL ARE D + + TN + TIH+HGV + DG I I PG
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHRATM---DGTPGIGAGSIAPG 114
Query: 106 QSYVYNFTLTGQRGTLLWHAHISWLRATV----HGAIVILPKRSVPYPFPKADKEKIIV 160
QS+ Y F T GT L+H H S L + +G ++ PK P AD E ++V
Sbjct: 115 QSFTYEFDAT-PFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGR----PPADDEMVMV 168
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 100/265 (37%), Gaps = 36/265 (13%)
Query: 20 ESAVRHYNFTVVMTNMTKLCASKSIV-TVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTI 78
E + H + ++ + K++ T NG P P + E D + + V N +K TI
Sbjct: 47 EKNIFHATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTI 106
Query: 79 HWHGV----RQLRTGWYDGPAYITQCPIQPGQSYVYNFTL-TGQRGTLLWHAHISWLRAT 133
HWHGV Q DG + PI G+ +Y F + GT +H H + +
Sbjct: 107 HWHGVPVPPDQ------DGSPH---DPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASK 157
Query: 134 -----VHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDA 188
+ GA VI K+ KEK ++ + + D A I PN +
Sbjct: 158 QVFMGLAGAFVIKAKKDALSHL----KEKDLMISD-LRLDENAQI---------PNNNLN 203
Query: 189 HTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSY- 247
+NG G Q F ++ +RI NA L +I G +V D
Sbjct: 204 DWLNGREGEFVLINGQ-FKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLI 262
Query: 248 TKPFKTDTIFIGPGQTTNALLTADK 272
K + +F+ P L+ A K
Sbjct: 263 EKTIYKEELFLSPASRVEVLIDAPK 287
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 453 NHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGV 512
+HP H+HG F + S + +F + R+TI+V +R + D G+
Sbjct: 406 DHPFHIHGTQFELI---SSKLNGKVQKAEFRAL----RDTINVRPNEELRLRMKQDFKGL 458
Query: 513 WFLHCHLEVHTSWGL 527
HCH+ H G+
Sbjct: 459 RMYHCHILEHEDLGM 473
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 97/245 (39%), Gaps = 35/245 (14%)
Query: 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDG--PAYITQCPIQPGQSYVYN 111
PT+ R V + + N + +HWHG W++ P++ I PG+SY Y+
Sbjct: 38 PTIILRRGQRVDMTLKNKLTEPTIVHWHG---FDVNWHNDAHPSFA----ITPGESYNYS 90
Query: 112 FTLTGQRGTLLWHAHISWLRATV----HGAIVILPKRSVPYPFPKADKEKIIVFGEWWKA 167
F + + GT L+H H L A +VI+ F ++
Sbjct: 91 FDVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGF------------KYGVN 138
Query: 168 DVEAVINQATQMGVAP--NVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAV 225
D+ VI+ +G AP N + I G G + SG +Y LR+VN +
Sbjct: 139 DLPLVISDRRFIGGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFKLSGGSYRLRLVNGSN 198
Query: 226 NDELFFKIAGHN-----LTVVEVDSSY-TKPFKTDTIFIGPGQTTNALLTADKKIGKYLI 279
I N + ++ VD + +P + +F+ P + ++ + G YL+
Sbjct: 199 ARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVELGE--GVYLL 256
Query: 280 TISPF 284
+PF
Sbjct: 257 KNTPF 261
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 102/508 (20%), Positives = 169/508 (33%), Gaps = 105/508 (20%)
Query: 39 CASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGV--RQLRTGWYDGPAY 96
S +V +G PGPT +VR N+ + ++H HG R GW
Sbjct: 54 LGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFSRAAFDGW------ 107
Query: 97 ITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRATVHGAIVILPKRSVPYPFPKADKE 156
+ +PG Y + TL +H H + T A ++ Y ++
Sbjct: 108 -AEDITEPGSFKDYYYPNRQSARTLWYHDHA--MHITAENAYR---GQAGLYMLTDPAED 161
Query: 157 KIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTY 216
+ + + + D+ ++ V+ +N G V + Q + + Y
Sbjct: 162 ALNLPSGYGEFDIPMILTSKQYTANGNLVTTNGELNSFWGDVIHVNGQPWPFKNVEPRKY 221
Query: 217 LLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTK-PFK---TDTIFIGPGQTTNALLTADK 272
R ++AAV+ L + D+ T+ PFK +D+ + T+ L +
Sbjct: 222 RFRFLDAAVSRSF-------GLYFADTDAIDTRLPFKVIASDSGLLEHPADTSLLYISMA 274
Query: 273 KIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNL 332
+ + + S + + + N+ G ++ I T+T DN
Sbjct: 275 ERYEVVFDFSDYAGKTIELRNLGG------------------SIGGIG----TDTDYDNT 312
Query: 333 RSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAH 392
+ M V T P+ + V A + ++ F PTT
Sbjct: 313 DKV--------------------MRFVVADDTTQPDTSVVPANLRDVPFPSPTT------ 346
Query: 393 YYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLY----RLAYNSTVQLVLQGTTV 448
P F + TG T NG RL N V V + +
Sbjct: 347 --------------NTPRQFRF--GRTGPTWTINGVAFADVQNRLLANVPVGTVERWELI 390
Query: 449 IAPEN--HPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPV---ERNTISVPTAGWTAI 503
A HP H+H +F + + SGN P + L D V R T+ V
Sbjct: 391 NAGNGWTHPIHIHLVDFKVISRTSGNNARTVMPYESGLKDVVWLGRRETVVVEA------ 444
Query: 504 RFRADNPGVWFLHCHLEVHTSWGLKMAF 531
A PGV+ HCH +H + AF
Sbjct: 445 -HYAPFPGVYMFHCHNLIHEDHDMMAAF 471
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 454 HPTHLHGFNFF--AVGKGSGNFDPNKDPQKFNLVDPVERN-TISVPTAGWTAIRFRADNP 510
H HLHG + G + +DP+ L+D + N +S G+ I P
Sbjct: 212 HTFHLHGHRWLDNRTGMRTSEYDPSP------LIDIKDLNPGVSF---GFQVIAGEGVGP 262
Query: 511 GVWFLHCHLEVHTSWGLKMAFVVDNGKG 538
G+W HCH++ H+ G+ F+V N G
Sbjct: 263 GMWMYHCHVQNHSDMGMAGMFLVRNADG 290
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 101/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWHA----HISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++HA + W + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHAAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles
Of Various Metal Cation Binding Sites
Length = 1065
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 23/132 (17%)
Query: 51 FPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAY--------ITQCPI 102
F GP + A D V V + N T H HG+ + ++G Y +
Sbjct: 92 FLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKE--HEGAIYPDNTTDFQRADDKV 149
Query: 103 QPGQSYVYNFTLTGQRG---------TLLWHAHISWLRATVHGAI---VILPKRSVPYPF 150
PG+ Y Y T ++ T ++H+HI + G I +I K S+
Sbjct: 150 YPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEK 209
Query: 151 PK-ADKEKIIVF 161
K D+E +++F
Sbjct: 210 EKHIDREFVVMF 221
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 510 PGVWFLHCHLEVHTSWGLKMAFVV 533
PG+W LHCH+ H G++ + V
Sbjct: 1033 PGIWLLHCHVTDHIHAGMETTYTV 1056
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 23/132 (17%)
Query: 51 FPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAY--------ITQCPI 102
F GP + A D V V + N T H HG+ + ++G Y +
Sbjct: 73 FLGPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKE--HEGAIYPDNTTDFQRADDKV 130
Query: 103 QPGQSYVYNFTLTGQRG---------TLLWHAHISWLRATVHGAI---VILPKRSVPYPF 150
PG+ Y Y T ++ T ++H+HI + G I +I K S+
Sbjct: 131 YPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEK 190
Query: 151 PK-ADKEKIIVF 161
K D+E +++F
Sbjct: 191 EKHIDREFVVMF 202
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 510 PGVWFLHCHLEVHTSWGLKMAFVV 533
PG+W LHCH+ H G++ + V
Sbjct: 1014 PGIWLLHCHVTDHIHAGMETTYTV 1037
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 55 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 106
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 107 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPQGKPLH 164
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 165 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 224
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 225 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 279
Query: 262 QTTNALLT 269
AL T
Sbjct: 280 SAGAALYT 287
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPEGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPEGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVEFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVNFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 100/264 (37%), Gaps = 33/264 (12%)
Query: 24 RHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGV 83
R Y M + ++ + GP L+ D +++ N I+ HG+
Sbjct: 422 RKYKKVRFMAYTDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGI 481
Query: 84 RQLRTGWY----DGPAYITQCPIQPGQSYVYNFTLTGQRG---------TLLWHAHISWL 130
+R + G ++ PI PG+ + Y +T+T + G T + + ++
Sbjct: 482 TDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNME 541
Query: 131 RATVHGAI---VILPKRSVPYPFPK--ADKEKIIVFG------EWW-KADVEAVI-NQAT 177
R G I +I K SV + +DK +I+F W+ +++ + N A
Sbjct: 542 RDLASGLIGPLLICYKESVDQRGNQIMSDKRNVILFSVFDENRSWYLTENIQRFLPNPAG 601
Query: 178 QMGVAPNVSDA---HTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIA 234
P + H+ING+ V + LH E Y+L I +FF
Sbjct: 602 VQLEDPEFQASNIMHSINGY---VFDSLQLSVCLH-EVAYWYILSIGAQTDFLSVFFSGY 657
Query: 235 GHNLTVVEVDSSYTKPFKTDTIFI 258
+V D+ PF +T+F+
Sbjct: 658 TFKHKMVYEDTLTLFPFSGETVFM 681
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 53 GPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC--------PIQP 104
GPT+ A D V++ + N + V++H GV + +G Y Q + P
Sbjct: 74 GPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKAS--EGAEYDDQTSQREKEDDKVFP 131
Query: 105 GQSYVYNFTLTGQRG---------TLLWHAHISW---LRATVHGAIVILPKRSVPYPFPK 152
G S+ Y + + + G T + +H+ L + + GA+++ + S+ +
Sbjct: 132 GGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKTQ 191
Query: 153 ADKEKIIVF-----GEWWKADVEAVINQATQMGVAPNVSDAHTINGH-----PGPVTNCT 202
+ I++F G+ W ++ + + Q A HT+NG+ PG + C
Sbjct: 192 TLHKFILLFAVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNGYVNRSLPG-LIGCH 250
Query: 203 SQGFTLHV 210
+ HV
Sbjct: 251 RKSVYWHV 258
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 57 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 108
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 109 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 166
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 167 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 226
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 227 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 281
Query: 262 QTTNALLT 269
AL T
Sbjct: 282 SAGAALYT 289
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 100/265 (37%), Gaps = 33/265 (12%)
Query: 24 RHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGV 83
R Y M + ++ + GP L+ D +++ N I+ HG+
Sbjct: 421 RKYKKVRFMAYTDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGI 480
Query: 84 RQLRTGWY----DGPAYITQCPIQPGQSYVYNFTLTGQRG---------TLLWHAHISWL 130
+R + G ++ PI PG+ + Y +T+T + G T + + ++
Sbjct: 481 TDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNME 540
Query: 131 RATVHGAI---VILPKRSVPYPFPK--ADKEKIIVFG------EWW-KADVEAVI-NQAT 177
R G I +I K SV + +DK +I+F W+ +++ + N A
Sbjct: 541 RDLASGLIGPLLICYKESVDQRGNQIMSDKRNVILFSVFDENRSWYLTENIQRFLPNPAG 600
Query: 178 QMGVAPNVSDA---HTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIA 234
P + H+ING+ V + LH E Y+L I +FF
Sbjct: 601 VQLEDPEFQASNIMHSINGY---VFDSLQLSVCLH-EVAYWYILSIGAQTDFLSVFFSGY 656
Query: 235 GHNLTVVEVDSSYTKPFKTDTIFIG 259
+V D+ PF +T+F+
Sbjct: 657 TFKHKMVYEDTLTLFPFSGETVFMS 681
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 33/188 (17%)
Query: 53 GPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC--------PIQP 104
GPT+ A D V++ + N + V++H GV + +G Y Q + P
Sbjct: 73 GPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKAS--EGAEYDDQTSQREKEDDKVFP 130
Query: 105 GQSYVYNFTLTGQRG---------TLLWHAHISW---LRATVHGAIVILPKRSVPYPFPK 152
G S+ Y + + + G T + +H+ L + + GA+++ + S+ +
Sbjct: 131 GGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKTQ 190
Query: 153 ADKEKIIVF-----GEWWKADVEAVINQATQMGVAPNVSDAHTINGH-----PGPVTNCT 202
+ I++F G+ W ++ + + Q A HT+NG+ PG + C
Sbjct: 191 TLHKFILLFAVFDEGKSWHSETKNSLMQDRDAASARAWPKMHTVNGYVNRSLPG-LIGCH 249
Query: 203 SQGFTLHV 210
+ HV
Sbjct: 250 RKSVYWHV 257
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 99/248 (39%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGASGTLMVLPRDGLKDPQGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 62 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 113
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + + G +++LP+ + P K
Sbjct: 114 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 171
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 172 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAD 231
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 232 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 286
Query: 262 QTTNALLT 269
AL T
Sbjct: 287 SAGAALYT 294
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 83/221 (37%), Gaps = 30/221 (13%)
Query: 52 PGPTLHAREDDNVIVRVTNH----VKYNVTIHWHGVRQLRTGWYDGPAYITQCPI-QPGQ 106
PG + RE D + ++NH + +N+ +H GP + PG
Sbjct: 58 PGSFIRVREGDEIEFNLSNHPSSKMPHNIDLH----------AVTGPGGGAESSFTAPGH 107
Query: 107 SYVYNFTLTGQRGTLLWHAHIS----WLRATVHGAIVILPKRSVPYPFPKADKEKIIVFG 162
+ +NF G ++H + + ++G I++ PK + D+E +V G
Sbjct: 108 TSTFNFKAL-NPGLYIYHCATAPVGMHIANGMYGLILVEPKEGL----APVDREYYLVQG 162
Query: 163 EWW-KADVEAVINQATQMGVAPNV-SDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRI 220
+++ K + Q M A + +D NG G T+ S L + G+T L I
Sbjct: 163 DFYTKGEFGEAGLQPFDMAKAIDEDADYVVFNGSVGSTTDENS----LTAKVGETVRLYI 218
Query: 221 VNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPG 261
N N F + G V V+ K T I G
Sbjct: 219 GNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAG 259
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D + + + TN + +NV H
Sbjct: 52 MTFNGSVPGPTLVVHEGDYIELTLVNPATNSMPHNVDFHAATGALGGA---------GLT 102
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSV 146
+ PGQ V F + GT ++H + W + + ++GA+++LP+ +
Sbjct: 103 QVVPGQEAVLRFK-ADRSGTFVYHCAPAGMVPWHVVSGMNGALMVLPRDGL 152
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYP 149
+ PG+ F + GT ++H + W + + + G +++LP+ + P
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPSGMVPWHVVSGMSGTLMVLPRDGLKDP 159
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYP 149
+ PG+ F + GT ++H + W + + + G +++LP+ + P
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDP 159
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 384 PTTALLQAHYYKISGVFT-----DDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNST 438
P+ + H Y F D+ P + FN +TG L G Y A+ +
Sbjct: 211 PSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTV 270
Query: 439 V---------QLVLQGTTVIAPENHPTHLHGFNFFA 465
V +VL + A E HPT L G+N A
Sbjct: 271 VMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSA 306
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Hydroxamic
Acid Inhbitor
Length = 413
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 384 PTTALLQAHYYKISGVFT-----DDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNST 438
P+ + H Y F D+ P + FN +TG L G Y A+ +
Sbjct: 211 PSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTV 270
Query: 439 V---------QLVLQGTTVIAPENHPTHLHGFNFFA 465
V +VL + A E HPT L G+N A
Sbjct: 271 VMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSA 306
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYP 149
+ PG+ F + GT ++H + W + + + G +++LP+ + P
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDP 159
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQO|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQV|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
pdb|2VQV|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
Length = 413
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 384 PTTALLQAHYYKISGVFT-----DDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNST 438
P+ + H Y F D+ P + FN +TG L G Y A+ +
Sbjct: 211 PSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTV 270
Query: 439 V---------QLVLQGTTVIAPENHPTHLHGFNFFA 465
V +VL + A E HPT L G+N A
Sbjct: 271 VMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSA 306
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 34/246 (13%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRVTNHVKYNV--TIHWHGVRQLRTGWYDGPAYITQCPI 102
+T NG PGPTL E D V + + N + ++ +HG TG G A +T +
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHGA----TGALGG-AKLTN--V 108
Query: 103 QPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-DKE 156
PG+ F + GT ++H + W + + + G +++LP+ + P K +
Sbjct: 109 NPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYD 167
Query: 157 KIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCTSQ 204
+ GE+ +K + + V ++ +H + NG G +T +
Sbjct: 168 RAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANA- 226
Query: 205 GFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPGQT 263
L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 227 ---LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSA 282
Query: 264 TNALLT 269
AL T
Sbjct: 283 GAALYT 288
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
pdb|2VQQ|B Chain B, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
Length = 413
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 384 PTTALLQAHYYKISGVFT-----DDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNST 438
P+ + H Y F D+ P + FN +TG L G Y A+ +
Sbjct: 211 PSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTV 270
Query: 439 V---------QLVLQGTTVIAPENHPTHLHGFNFFA 465
V +VL + A E HPT L G+N A
Sbjct: 271 VMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSA 306
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 99/248 (39%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGQSGTLMVLPRDGLKDPEGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 99/248 (39%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + W + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGQSGTLMVLPRDGLKDPEGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 34/246 (13%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRVTNHVKYNV--TIHWHGVRQLRTGWYDGPAYITQCPI 102
+T NG PGPTL E D V + + N + ++ +HG TG G A +T +
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHGA----TGALGG-AKLTN--V 108
Query: 103 QPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYPFPKA-DKE 156
PG+ F + GT ++H + W + + + G +++LP+ + P K +
Sbjct: 109 NPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLHYD 167
Query: 157 KIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCTSQ 204
+ GE+ +K + + V ++ +H + NG G +T +
Sbjct: 168 RAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANA- 226
Query: 205 GFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPGQT 263
L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 227 ---LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSA 282
Query: 264 TNALLT 269
AL T
Sbjct: 283 GAALYT 288
>pdb|1SDD|B Chain B, Crystal Structure Of Bovine Factor Vai
Length = 647
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 53 GPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCP--------IQP 104
GP + A DD + VR N ++H HG+ ++ +G Y P IQP
Sbjct: 68 GPVIRAEVDDVIQVRFKNLASRPYSLHAHGLSYEKSS--EGKTYEDDSPEWFKEDNAIQP 125
Query: 105 GQSYVYNFTLTGQRG 119
++Y Y + T + G
Sbjct: 126 NKTYTYVWHATTRSG 140
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 96/243 (39%), Gaps = 36/243 (14%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 57 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 108
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWHAHISWLRATVHGAIVILPKRSVPYPFPKA-DKEKII 159
+ PG+ F + GT ++H + G +++LP+ + P K ++
Sbjct: 109 -VNPGEQATLRFK-ADRSGTFVYHCTPHPFMS---GTLMVLPRDGLKDPQGKPLHYDRAY 163
Query: 160 VFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCTSQGFT 207
GE+ +K + + V ++ +H + NG G +T +
Sbjct: 164 TIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANA---- 219
Query: 208 LHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPGQTTNA 266
L + G+T LL I + A D I GH V E P + +T FI G A
Sbjct: 220 LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAA 278
Query: 267 LLT 269
L T
Sbjct: 279 LYT 281
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 98/248 (39%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWHAHISWL-----RATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++H + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPHHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRVTNHVKYNV--TIHWHGVRQLRTGWYDGPAYITQCPI 102
+T NG PGPTL E D V + + N + ++ +HG TG G A +T +
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFHGA----TGALGG-AKLTN--V 108
Query: 103 QPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSVPYP 149
PG+ F + GT ++H + W + + + G +++LP+ + P
Sbjct: 109 NPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDP 159
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVR 84
NG GP + + V V + N + T+HWHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 454 HPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPG-- 511
HP H+HG F + + P + VE N V ++F D P
Sbjct: 415 HPFHIHGTQFRILSENGK--PPAAHRAGWKDTVKVEGNVSEV------LVKFNHDAPKEH 466
Query: 512 VWFLHCHLEVHTSWGLKMAFVVDNGKGPN 540
+ HCHL H G+ + F V PN
Sbjct: 467 AYMAHCHLLEHEDTGMMLGFTVSAWSHPN 495
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From
E. Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under
Different Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under
Different Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under
Different Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under
Different Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In
Previously Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVR 84
NG GP + + V V + N + T+HWHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVR 84
NG GP + + V V + N + T+HWHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVR 84
NG GP + + V V + N + T+HWHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVR 84
NG GP + + V V + N + T+HWHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 454 HPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPG-- 511
HP H+HG F + + P + VE N V ++F D P
Sbjct: 415 HPFHIHGTQFRILSENGK--PPAAHRAGWKDTVKVEGNVSEV------LVKFNHDAPKEH 466
Query: 512 VWFLHCHLEVHTSWGLKMAFVVDNG 536
+ HCHL H G+ + F V G
Sbjct: 467 AYMAHCHLLEHEDTGMMLGFTVLQG 491
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVR 84
NG GP + + V V + N + T+HWHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQS 107
NG GP + + V V + N + T+HWHG+ G DG Q I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE--VPGEVDGGP---QGIIPPGGK 96
Query: 108 YVYNFTLTGQRGTLLWHAH 126
+ T +H H
Sbjct: 97 RSVTLNVDQPAATCWFHPH 115
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVR 84
NG GP + + V V + N + T+HWHG+
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLE 78
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 38/248 (15%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGPTL E D V + + TN + +NV H TG G A +T
Sbjct: 56 MTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG------ATGALGG-AKLTN- 107
Query: 101 PIQPGQSYVYNFTLTGQRGTLLW----HAHISW-LRATVHGAIVILPKRSVPYPFPKA-D 154
+ PG+ F + GT ++ + W + + + G +++LP+ + P K
Sbjct: 108 -VNPGEQATLRFK-ADRSGTFVYVCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 155 KEKIIVFGEW-----------WKADVEAVINQATQMGVAPNVSDAHTI-NGHPGPVTNCT 202
++ GE+ +K + + V ++ +H + NG G +T
Sbjct: 166 YDRAYTIGEFDLYIPKGPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGAN 225
Query: 203 SQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKT-DTIFIGPG 261
+ L + G+T LL I + A D I GH V E P + +T FI G
Sbjct: 226 A----LTAKVGETVLL-IHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGG 280
Query: 262 QTTNALLT 269
AL T
Sbjct: 281 SAGAALYT 288
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 53 GPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC--------PIQP 104
GPTL+A D + V N ++IH G++ + + +G +Y + P
Sbjct: 59 GPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIK--YSKFSEGASYSDHTLPMEKMDDAVAP 116
Query: 105 GQSYVYNFTLTGQRG 119
GQ Y Y + ++ G
Sbjct: 117 GQEYTYEWIISEHSG 131
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter Cycloclastes
Cu Nitrite Reductase With Endogenously Bound Nitrite And
No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu Nitrite
Reductase With Bound No
Length = 340
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGP + E+D V +R+ TN + +N+ H
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGG---------ALT 112
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSV 146
+ PG+ F T + G ++H + W + + ++GAI++LP+ +
Sbjct: 113 QVNPGEETTLRFKAT-KPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGL 162
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGP + E+D V +R+ TN + +N+ H
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGG---------ALT 112
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSV 146
+ PG+ F T + G ++H + W + + ++GAI++LP+ +
Sbjct: 113 QVNPGEETTLRFKAT-KPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGL 162
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 454 HPTHLHGFNFF--AVGKGSGNFDPNKDPQKFNLVDPVERNTISVP--TAGWTAIRFRADN 509
H HLHG + G +G DP++ ++D N I P + G+ I
Sbjct: 196 HTFHLHGHRWADNRTGMLTGPDDPSQ------VID----NKICGPADSFGFQVIAGEGVG 245
Query: 510 PGVWFLHCHLEVHTSWGLKMAFVV 533
G W HCH++ H+ G+ F+V
Sbjct: 246 AGAWMYHCHVQSHSDMGMVGLFLV 269
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGP + E+D V +R+ TN + +N+ H
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGG---------ALT 112
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSV 146
+ PG+ F T + G ++H + W + + ++GAI++LP+ +
Sbjct: 113 QVNPGEETTLRFKAT-KPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGL 162
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 45 VTVNGKFPGPTLHAREDDNVIVRV----TNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100
+T NG PGP + E+D V +R+ TN + +N+ H
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGG---------ALT 112
Query: 101 PIQPGQSYVYNFTLTGQRGTLLWH----AHISW-LRATVHGAIVILPKRSV 146
+ PG+ F T + G ++H + W + + ++GAI++LP+ +
Sbjct: 113 QVNPGEETTLRFKAT-KPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGL 162
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 454 HPTHLHGFNFFAVGKG--SGNFDPNKDPQKFNLVDPVERNTISVPTA--GWTAIRFRADN 509
H H+HG + G +G DP++ ++D N I+ P G+ I
Sbjct: 231 HTFHMHGHRWADNRTGILTGPDDPSR------VID----NKITGPADSFGFQIIAGEGVG 280
Query: 510 PGVWFLHCHLEVHTSWGLKMAFVV 533
G W HCH++ H+ G+ F+V
Sbjct: 281 AGAWMYHCHVQSHSDMGMVGLFLV 304
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 45 VTVNGKFP--GPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPI 102
+T+N + P GP A D V + + H +Y T H HG R W D I P
Sbjct: 198 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTGPD 252
Query: 103 QPGQSYVYNFTLTG 116
P S V + +TG
Sbjct: 253 DP--SRVIDNKITG 264
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 52 PGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPG--QSYV 109
PGP + E D + + TN + ++H HG+ + DG A + + ++PG ++Y
Sbjct: 75 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTA-MNKSDVEPGGTRTYT 131
Query: 110 YNFTLTGQRGTLLW 123
+ G+R W
Sbjct: 132 WRTHKPGRRDDGTW 145
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 454 HPTHLHGFNFFAVGKG--SGNFDPNKDPQKFNLVDPVERNTISVP--TAGWTAIRFRADN 509
H H+HG + G +G DP++ ++D N I+ P + G+ I
Sbjct: 193 HTFHMHGHRWADNRTGILTGPDDPSR------VID----NKITGPADSFGFQIIAGEGVG 242
Query: 510 PGVWFLHCHLEVHTSWGLKMAFVV 533
G W HCH++ H+ G+ F+V
Sbjct: 243 AGAWMYHCHVQSHSDMGMVGLFLV 266
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 52 PGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPG--QSYV 109
PGP + E D + + TN + ++H HG+ + DG A + + ++PG ++Y
Sbjct: 37 PGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDAEISS--DGTA-MNKSDVEPGGTRTYT 93
Query: 110 YNFTLTGQRGTLLW 123
+ G+R W
Sbjct: 94 WRTHKPGRRDDGTW 107
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 45 VTVNGKFP--GPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPI 102
+T+N + P GP A D V + + H +Y T H HG R W D I P
Sbjct: 160 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTGPD 214
Query: 103 QPGQSYVYNFTLTG 116
P S V + +TG
Sbjct: 215 DP--SRVIDNKITG 226
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 454 HPTHLHGFNFFAVGKG--SGNFDPNKDPQKFNLVDPVERNTISVP--TAGWTAIRFRADN 509
H H+HG + G +G DP++ ++D N I+ P + G+ I
Sbjct: 194 HTFHMHGHRWADNRTGILTGPDDPSR------VID----NKITGPADSFGFQIIAGEGVG 243
Query: 510 PGVWFLHCHLEVHTSWGLKMAFVV 533
G W HCH++ H+ G+ F+V
Sbjct: 244 AGAWMYHCHVQSHSDMGMVGLFLV 267
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 45 VTVNGKFP--GPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPI 102
+T+N + P GP A D V + + H +Y T H HG R W D I P
Sbjct: 161 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHR-----WADNRTGILTGPD 215
Query: 103 QPGQSYVYNFTLTG 116
P S V + +TG
Sbjct: 216 DP--SRVIDNKITG 227
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 454 HPTHLHGFNFFAVGKG--SGNFDPNKDPQKFNLVDPVERNTISVP--TAGWTAIRFRADN 509
H H+HG + G +G DP++ ++D N I+ P + G+ I
Sbjct: 190 HTFHMHGHRWADNRTGILTGPDDPSR------VID----NKITGPADSFGFQIIAGEGVG 239
Query: 510 PGVWFLHCHLEVHTSWGLKMAFVV 533
G W HCH++ H+ G+ F+V
Sbjct: 240 AGAWMYHCHVQSHSDMGMVGLFLV 263
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 25/148 (16%)
Query: 46 TVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPG 105
T NGK PGP L R D V + + NH ++ H V G A TQ PG
Sbjct: 187 TFNGKVPGPFLRVRVGDTVELHLKNHKD---SLMVHSVDFHGATGPGGAAAFTQT--DPG 241
Query: 106 QSYVYNFTLTGQRGTLLWHAHI----SWLRATVHGAIVILPKRSVPYPFPKADKEKIIVF 161
+ V F G ++H + + ++G +++ P+ + P+ D+E ++
Sbjct: 242 EETVVTFKAL-IPGIYVYHCATPSVPTHITNGMYGLLLVEPEGGL----PQVDREFYVMQ 296
Query: 162 GEWW-----------KADVEAVINQATQ 178
GE + + D E +IN+ +
Sbjct: 297 GEIYTVKSFGTSGEQEMDYEKLINEKPE 324
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 394 YKISGVFTDDFPAKPPIAF 412
YK+ +F DD+P KPPI +
Sbjct: 55 YKLKIIFPDDYPLKPPIVY 73
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 449 IAPENHPTHLHGFNFFAVGKGS---GNFD----PNKDPQKFNLVDPV--------ERNTI 493
++P HP H+H +F +G+ + FD + P + + PV ++
Sbjct: 489 LSPILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVF 548
Query: 494 SVPTAGWTAIRFRADNP-GVWFLHCHLEVHTSWGLKMAFVV 533
VP + + D G + HCHL H G+ FVV
Sbjct: 549 QVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVV 589
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 43 SIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPI 102
S+ +NG++ GPT+ + D+V + +N + NV++ G+ Q+ GPA + +
Sbjct: 39 SVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGL-QVPGPLMGGPARM----M 93
Query: 103 QPGQSYVYNFTLTGQRGTLLWHAH 126
P + + TL +HA+
Sbjct: 94 SPNADWAPVLPIRQNAATLWYHAN 117
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: E498l Mutant
Length = 507
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHV 72
NG FPGPT+ + ++NV V+ N++
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116a Mutant
Length = 513
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHV 72
NG FPGPT+ + ++NV V+ N++
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|1M11|1 Chain 1, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 278
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 286 DTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTF----SDNLRSLNSKRYP 341
DT A++N A R TVA + T++PA+ A E +T SD +++ + K Y
Sbjct: 2 DTETAIDN----AIARVADTVASGPSNSTSIPALTAVETGHTSQVEPSDTMQTRHVKNYH 57
Query: 342 AKVPLTVDHSLLLTMAVAV 360
++ TV++ L + V +
Sbjct: 58 SRSESTVENFLSRSACVYI 76
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116n Mutant
Length = 513
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHV 72
NG FPGPT+ + ++NV V+ N++
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of
Cota-Laccase: I494a Mutant
Length = 513
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHV 72
NG FPGPT+ + ++NV V+ N++
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: E498d Mutant
Length = 513
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHV 72
NG FPGPT+ + ++NV V+ N++
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein
From Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHV 72
NG FPGPT+ + ++NV V+ N++
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site:e498t Mutant
Length = 513
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHV 72
NG FPGPT+ + ++NV V+ N++
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116e Mutant
Length = 513
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHV 72
NG FPGPT+ + ++NV V+ N++
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 48 NGKFPGPTLHAREDDNVIVRVTNHV 72
NG FPGPT+ + ++NV V+ N++
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|3IYP|A Chain A, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
pdb|2X5I|A Chain A, Crystal Structure Echovirus 7
Length = 292
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 286 DTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTF----SDNLRSLNSKRYP 341
DT A++N A R TVA + T++PA+ A E +T SD +++ + K Y
Sbjct: 2 DTETAIDN----AIARVADTVASGPSNSTSIPALTAVETGHTSQVEPSDTMQTRHVKNYH 57
Query: 342 AKVPLTVDHSLLLTMAVAV 360
++ TV++ L + V +
Sbjct: 58 SRSESTVENFLSRSACVYI 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,634,233
Number of Sequences: 62578
Number of extensions: 771097
Number of successful extensions: 1945
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 253
length of query: 553
length of database: 14,973,337
effective HSP length: 104
effective length of query: 449
effective length of database: 8,465,225
effective search space: 3800886025
effective search space used: 3800886025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)