Query 008799
Match_columns 553
No_of_seqs 208 out of 1578
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 16:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 9E-108 2E-112 878.2 62.3 533 21-553 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 3E-105 7E-110 849.8 59.7 518 18-553 22-554 (596)
3 PLN02991 oxidoreductase 100.0 5E-104 1E-108 836.3 59.3 499 17-553 22-530 (543)
4 PLN02792 oxidoreductase 100.0 2E-103 5E-108 833.0 59.0 508 19-553 12-523 (536)
5 PLN02354 copper ion binding / 100.0 4E-103 1E-107 834.8 58.7 525 1-553 2-538 (552)
6 PLN02835 oxidoreductase 100.0 1E-102 3E-107 830.4 60.1 497 19-553 25-531 (539)
7 PLN02168 copper ion binding / 100.0 3E-102 7E-107 824.2 59.0 514 4-553 8-541 (545)
8 KOG1263 Multicopper oxidases [ 100.0 2E-100 3E-105 804.4 58.2 527 15-553 20-555 (563)
9 PLN02604 oxidoreductase 100.0 4.4E-96 9E-101 788.9 60.0 526 4-553 5-561 (566)
10 PLN02191 L-ascorbate oxidase 100.0 3.4E-96 7E-101 787.7 57.7 510 20-553 20-561 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 4.1E-95 9E-100 779.4 57.2 508 23-553 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1.4E-92 3.1E-97 757.3 54.7 489 23-537 8-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 6.9E-78 1.5E-82 642.7 50.4 422 23-534 45-587 (587)
14 PRK10965 multicopper oxidase; 100.0 2.6E-75 5.6E-80 618.9 44.8 421 23-534 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 9.3E-74 2E-78 602.1 44.1 402 25-535 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 1.5E-59 3.2E-64 497.2 41.4 402 36-535 46-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.4E-47 3E-52 383.1 24.8 265 19-306 23-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 4E-36 8.7E-41 256.6 11.6 116 29-144 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 2.4E-29 5.2E-34 223.9 11.6 107 425-535 30-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 1.3E-26 2.9E-31 210.6 13.8 149 155-305 1-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.7 1.4E-17 2.9E-22 147.7 12.5 102 38-141 37-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 9.3E-15 2E-19 146.7 25.5 237 186-537 47-299 (311)
23 TIGR01480 copper_res_A copper- 99.6 6.7E-15 1.5E-19 158.6 19.9 226 45-283 249-572 (587)
24 TIGR03096 nitroso_cyanin nitro 99.5 5.9E-13 1.3E-17 113.8 11.7 101 15-131 16-124 (135)
25 PRK10965 multicopper oxidase; 99.5 2.9E-12 6.3E-17 137.2 19.4 232 41-285 211-510 (523)
26 PLN02835 oxidoreductase 99.4 2.4E-11 5.3E-16 130.6 19.0 238 42-283 191-497 (539)
27 PRK10883 FtsI repressor; Provi 99.3 4.7E-11 1E-15 126.7 19.4 219 40-285 207-455 (471)
28 TIGR03389 laccase laccase, pla 99.3 2.4E-10 5.2E-15 123.9 23.8 239 43-283 167-505 (539)
29 COG2132 SufI Putative multicop 99.2 2.8E-10 6.1E-15 121.1 17.1 233 39-284 186-435 (451)
30 PLN02168 copper ion binding / 99.1 6E-09 1.3E-13 112.0 20.6 239 42-283 188-501 (545)
31 PLN02354 copper ion binding / 99.1 4.4E-09 9.5E-14 113.5 18.2 237 43-283 190-504 (552)
32 PLN02604 oxidoreductase 99.1 5.7E-09 1.2E-13 113.6 18.6 225 54-283 224-532 (566)
33 PLN02991 oxidoreductase 99.0 1.7E-08 3.7E-13 108.4 20.5 239 42-283 190-496 (543)
34 TIGR03388 ascorbase L-ascorbat 99.0 9E-09 2E-13 111.6 18.5 227 55-283 204-509 (541)
35 TIGR03390 ascorbOXfungal L-asc 99.0 1.1E-08 2.4E-13 110.6 18.6 237 43-283 172-517 (538)
36 PLN02792 oxidoreductase 99.0 4E-08 8.6E-13 105.6 21.4 240 41-283 178-489 (536)
37 PF07731 Cu-oxidase_2: Multico 98.9 1.3E-08 2.9E-13 90.1 11.0 77 206-284 34-121 (138)
38 PLN02191 L-ascorbate oxidase 98.8 1.7E-07 3.8E-12 101.9 19.1 226 54-283 226-532 (574)
39 PF07732 Cu-oxidase_3: Multico 98.8 4.2E-08 9E-13 83.9 10.1 91 428-536 25-116 (117)
40 PLN00044 multi-copper oxidase- 98.6 5.3E-06 1.1E-10 90.0 23.3 83 187-283 49-132 (596)
41 PF13473 Cupredoxin_1: Cupredo 98.6 1.5E-07 3.2E-12 79.0 6.6 70 54-140 35-104 (104)
42 PRK02710 plastocyanin; Provisi 98.5 3.2E-06 6.9E-11 72.6 12.8 73 54-141 47-119 (119)
43 TIGR02656 cyanin_plasto plasto 98.2 8.6E-06 1.9E-10 67.5 8.5 81 54-141 17-99 (99)
44 KOG1263 Multicopper oxidases [ 98.1 0.00034 7.3E-09 75.4 21.8 236 187-518 48-286 (563)
45 TIGR03095 rusti_cyanin rusticy 98.1 2E-05 4.3E-10 70.2 9.4 92 429-534 52-148 (148)
46 TIGR02657 amicyanin amicyanin. 98.0 3.4E-05 7.4E-10 61.7 8.5 73 54-141 11-83 (83)
47 PF00394 Cu-oxidase: Multicopp 97.9 5E-05 1.1E-09 68.9 8.8 94 428-535 59-157 (159)
48 PF00127 Copper-bind: Copper b 97.8 4E-05 8.7E-10 63.6 6.4 82 54-141 17-99 (99)
49 TIGR03094 sulfo_cyanin sulfocy 97.8 0.00034 7.4E-09 62.4 12.1 100 43-146 73-190 (195)
50 PRK02888 nitrous-oxide reducta 97.8 7.4E-05 1.6E-09 80.1 9.5 100 33-143 532-635 (635)
51 PF06525 SoxE: Sulfocyanin (So 97.7 0.0003 6.5E-09 64.2 9.7 103 43-146 74-191 (196)
52 TIGR02656 cyanin_plasto plasto 97.5 0.00051 1.1E-08 56.9 7.7 82 430-534 18-99 (99)
53 TIGR02375 pseudoazurin pseudoa 97.4 0.0011 2.4E-08 56.3 8.8 75 54-144 15-90 (116)
54 COG3794 PetE Plastocyanin [Ene 97.4 0.001 2.3E-08 57.0 8.6 75 54-142 54-128 (128)
55 TIGR03096 nitroso_cyanin nitro 97.3 0.00093 2E-08 57.7 8.0 59 430-519 62-120 (135)
56 TIGR03102 halo_cynanin halocya 97.0 0.0042 9.1E-08 52.6 8.8 73 54-141 42-115 (115)
57 PF00127 Copper-bind: Copper b 96.8 0.0075 1.6E-07 49.9 8.1 82 430-534 18-99 (99)
58 PRK02888 nitrous-oxide reducta 96.7 0.0072 1.5E-07 65.2 9.4 78 430-535 556-634 (635)
59 PF13473 Cupredoxin_1: Cupredo 96.5 0.011 2.4E-07 49.4 7.5 66 430-527 36-101 (104)
60 COG4454 Uncharacterized copper 96.4 0.033 7.2E-07 48.9 9.6 88 50-142 59-158 (158)
61 PRK02710 plastocyanin; Provisi 96.0 0.028 6.1E-07 48.2 7.3 72 430-534 48-119 (119)
62 TIGR02375 pseudoazurin pseudoa 95.2 0.11 2.4E-06 44.1 8.0 37 497-537 54-90 (116)
63 PRK10378 inactive ferrous ion 94.3 0.34 7.3E-06 49.7 10.3 75 54-144 44-119 (375)
64 COG4454 Uncharacterized copper 94.3 0.18 3.8E-06 44.4 7.0 92 431-534 65-157 (158)
65 TIGR03102 halo_cynanin halocya 94.0 0.38 8.2E-06 40.8 8.5 73 430-534 43-115 (115)
66 TIGR02695 azurin azurin. Azuri 93.8 0.29 6.4E-06 41.6 7.3 86 54-139 16-124 (125)
67 PF00116 COX2: Cytochrome C ox 92.8 0.56 1.2E-05 40.2 7.7 72 54-140 46-119 (120)
68 TIGR02657 amicyanin amicyanin. 91.7 1.2 2.7E-05 35.2 8.1 72 430-534 12-83 (83)
69 PF06525 SoxE: Sulfocyanin (So 89.9 4.8 0.0001 37.2 11.0 99 428-536 85-188 (196)
70 PF00116 COX2: Cytochrome C ox 87.4 5.6 0.00012 34.0 9.3 74 428-533 45-119 (120)
71 TIGR02866 CoxB cytochrome c ox 87.1 2.6 5.7E-05 39.6 7.8 74 429-536 117-193 (201)
72 TIGR02866 CoxB cytochrome c ox 86.8 4.2 9E-05 38.3 9.0 76 54-144 117-194 (201)
73 PF12690 BsuPI: Intracellular 85.6 10 0.00022 29.9 9.2 66 215-281 3-82 (82)
74 COG3794 PetE Plastocyanin [Ene 85.2 4.5 9.6E-05 34.9 7.4 73 431-535 56-128 (128)
75 TIGR03094 sulfo_cyanin sulfocy 84.4 15 0.00032 33.5 10.5 100 427-536 83-187 (195)
76 COG1470 Predicted membrane pro 83.4 64 0.0014 34.0 16.4 176 56-286 278-470 (513)
77 PF12690 BsuPI: Intracellular 81.5 2.9 6.3E-05 33.1 4.5 58 55-123 17-80 (82)
78 TIGR02695 azurin azurin. Azuri 80.9 12 0.00026 32.0 8.2 77 206-282 16-111 (125)
79 COG1622 CyoA Heme/copper-type 77.8 9.6 0.00021 37.0 7.7 77 54-145 137-215 (247)
80 COG4263 NosZ Nitrous oxide red 77.3 3.3 7.1E-05 42.8 4.5 77 54-141 558-636 (637)
81 COG1622 CyoA Heme/copper-type 71.0 20 0.00044 34.8 8.1 62 206-286 137-198 (247)
82 PF05506 DUF756: Domain of unk 65.3 26 0.00056 28.0 6.5 63 53-124 8-73 (89)
83 TIGR03079 CH4_NH3mon_ox_B meth 63.4 49 0.0011 33.6 9.1 16 99-114 337-352 (399)
84 TIGR01433 CyoA cytochrome o ub 60.6 22 0.00047 34.1 6.0 74 430-535 140-214 (226)
85 PRK10378 inactive ferrous ion 58.0 32 0.00069 35.6 7.0 61 206-282 44-104 (375)
86 PF10633 NPCBM_assoc: NPCBM-as 57.4 18 0.00039 28.0 4.1 60 59-122 2-70 (78)
87 MTH00140 COX2 cytochrome c oxi 57.3 42 0.00092 32.2 7.5 75 429-535 140-215 (228)
88 MTH00047 COX2 cytochrome c oxi 56.8 94 0.002 29.0 9.4 76 429-536 116-192 (194)
89 PF05938 Self-incomp_S1: Plant 52.8 35 0.00077 28.4 5.5 70 65-143 2-71 (110)
90 PF07705 CARDB: CARDB; InterP 52.2 1.2E+02 0.0026 24.1 9.3 66 209-283 14-83 (101)
91 MTH00140 COX2 cytochrome c oxi 49.4 52 0.0011 31.6 6.7 61 206-285 140-200 (228)
92 PF10633 NPCBM_assoc: NPCBM-as 48.6 84 0.0018 24.2 6.7 63 211-282 2-74 (78)
93 MTH00047 COX2 cytochrome c oxi 48.5 66 0.0014 30.0 7.0 61 206-285 116-176 (194)
94 PF04151 PPC: Bacterial pre-pe 48.0 88 0.0019 23.4 6.5 65 206-282 5-69 (70)
95 TIGR01433 CyoA cytochrome o ub 46.8 51 0.0011 31.6 6.1 62 206-286 139-200 (226)
96 PF01835 A2M_N: MG2 domain; I 46.8 60 0.0013 26.2 5.9 69 209-283 10-85 (99)
97 COG2967 ApaG Uncharacterized p 42.7 30 0.00065 29.1 3.3 47 65-112 33-85 (126)
98 COG1188 Ribosome-associated he 42.5 20 0.00043 29.3 2.2 35 44-78 35-69 (100)
99 TIGR01432 QOXA cytochrome aa3 41.5 63 0.0014 30.7 5.9 75 430-536 131-206 (217)
100 TIGR01432 QOXA cytochrome aa3 40.8 95 0.002 29.5 7.0 62 206-286 130-191 (217)
101 KOG4063 Major epididymal secre 40.2 2E+02 0.0044 25.5 8.0 60 55-114 49-122 (158)
102 MTH00008 COX2 cytochrome c oxi 39.7 1.4E+02 0.0029 28.7 7.8 61 206-285 140-200 (228)
103 PTZ00047 cytochrome c oxidase 38.3 2E+02 0.0043 26.0 8.0 74 430-535 74-148 (162)
104 PF14344 DUF4397: Domain of un 37.9 1.7E+02 0.0037 24.5 7.6 50 217-272 3-53 (122)
105 PF04379 DUF525: Protein of un 37.4 58 0.0012 26.2 4.1 49 215-266 15-67 (90)
106 PRK05461 apaG CO2+/MG2+ efflux 37.1 96 0.0021 26.8 5.7 49 215-266 32-84 (127)
107 PF07691 PA14: PA14 domain; I 36.9 2.5E+02 0.0054 24.0 8.7 61 208-273 54-121 (145)
108 MTH00129 COX2 cytochrome c oxi 36.7 1.4E+02 0.003 28.7 7.4 61 206-285 140-200 (230)
109 MTH00098 COX2 cytochrome c oxi 35.3 1.6E+02 0.0034 28.3 7.5 61 206-285 140-200 (227)
110 PF11322 DUF3124: Protein of u 35.2 1.2E+02 0.0026 26.0 5.9 53 217-273 28-80 (125)
111 MTH00129 COX2 cytochrome c oxi 34.3 1.3E+02 0.0028 28.9 6.8 75 429-535 140-215 (230)
112 PF04744 Monooxygenase_B: Mono 33.4 73 0.0016 32.6 5.0 102 1-116 204-335 (381)
113 MTH00051 COX2 cytochrome c oxi 32.9 1.9E+02 0.0041 27.9 7.6 61 206-285 144-204 (234)
114 PRK13202 ureB urease subunit b 32.7 1.6E+02 0.0034 24.3 5.8 64 207-271 12-85 (104)
115 PTZ00047 cytochrome c oxidase 32.7 2.9E+02 0.0063 24.9 8.1 61 206-285 73-133 (162)
116 PF02102 Peptidase_M35: Deuter 32.6 15 0.00032 37.7 0.0 46 75-125 77-122 (359)
117 PF14481 Fimbrial_PilY2: Type 32.5 25 0.00053 28.9 1.2 15 53-67 64-79 (118)
118 PF11614 FixG_C: IG-like fold 32.1 1.4E+02 0.0031 25.0 6.1 48 215-271 34-83 (118)
119 PRK10525 cytochrome o ubiquino 32.1 90 0.002 31.5 5.4 62 206-286 151-212 (315)
120 MTH00185 COX2 cytochrome c oxi 30.2 2.5E+02 0.0054 27.0 8.0 74 207-299 141-214 (230)
121 PF10989 DUF2808: Protein of u 29.9 59 0.0013 28.7 3.4 27 494-520 98-128 (146)
122 PF14451 Ub-Mut7C: Mut7-C ubiq 29.2 56 0.0012 25.7 2.8 28 40-67 47-74 (81)
123 MTH00139 COX2 cytochrome c oxi 29.2 1.8E+02 0.0038 27.9 6.8 76 428-535 139-215 (226)
124 smart00758 PA14 domain in bact 28.2 3.6E+02 0.0078 22.9 8.1 61 208-273 52-113 (136)
125 MTH00008 COX2 cytochrome c oxi 27.6 2.5E+02 0.0055 26.9 7.5 75 429-535 140-215 (228)
126 PF14392 zf-CCHC_4: Zinc knuck 26.9 85 0.0018 21.9 3.1 41 485-525 4-45 (49)
127 PF05753 TRAP_beta: Translocon 26.9 2.1E+02 0.0045 26.4 6.5 23 99-121 80-103 (181)
128 MTH00117 COX2 cytochrome c oxi 26.3 3.5E+02 0.0076 25.9 8.2 74 207-299 141-214 (227)
129 MTH00023 COX2 cytochrome c oxi 25.9 3E+02 0.0064 26.6 7.7 75 429-535 151-226 (240)
130 KOG4680 Uncharacterized conser 25.3 4.6E+02 0.01 22.9 7.9 72 187-285 56-129 (153)
131 MTH00076 COX2 cytochrome c oxi 25.1 3.4E+02 0.0073 26.0 7.9 74 207-299 141-214 (228)
132 PF14524 Wzt_C: Wzt C-terminal 25.1 2.9E+02 0.0063 23.4 7.1 72 209-283 30-107 (142)
133 cd00916 Npc2_like Niemann-Pick 25.0 2.6E+02 0.0056 23.8 6.4 60 55-114 23-91 (123)
134 TIGR00192 urease_beta urease, 24.7 2.5E+02 0.0055 23.1 5.7 64 207-271 12-84 (101)
135 PRK05461 apaG CO2+/MG2+ efflux 24.6 1.2E+02 0.0027 26.1 4.2 12 100-111 74-85 (127)
136 TIGR02988 YaaA_near_RecF S4 do 23.9 56 0.0012 23.7 1.8 23 44-66 35-58 (59)
137 MTH00154 COX2 cytochrome c oxi 23.5 4.4E+02 0.0095 25.2 8.3 61 206-285 140-200 (227)
138 PF11142 DUF2917: Protein of u 23.5 1.8E+02 0.0039 21.6 4.5 46 208-265 2-47 (63)
139 PRK10525 cytochrome o ubiquino 23.4 1.6E+02 0.0034 29.9 5.4 73 430-534 152-225 (315)
140 COG3354 FlaG Putative archaeal 23.1 5.3E+02 0.011 22.8 7.8 63 214-281 70-140 (154)
141 TIGR03396 PC_PLC phospholipase 22.6 4.8E+02 0.01 29.6 9.4 65 52-125 592-659 (690)
142 PF15415 DUF4622: Protein of u 22.4 4.4E+02 0.0094 25.4 7.6 43 206-249 94-137 (310)
143 PRK15218 fimbrial chaperone pr 22.1 2.6E+02 0.0056 26.8 6.4 18 54-71 75-92 (226)
144 PF14326 DUF4384: Domain of un 21.9 3.9E+02 0.0084 20.8 8.6 15 210-224 3-17 (83)
145 MTH00098 COX2 cytochrome c oxi 21.5 3.8E+02 0.0082 25.7 7.4 75 429-535 140-215 (227)
146 PF13956 Ibs_toxin: Toxin Ibs, 21.5 59 0.0013 17.6 1.0 12 5-16 6-17 (19)
147 cd00407 Urease_beta Urease bet 21.3 2.9E+02 0.0063 22.7 5.4 64 207-271 12-84 (101)
148 COG4263 NosZ Nitrous oxide red 21.1 3.4E+02 0.0074 28.7 7.2 36 493-528 594-633 (637)
149 PF14874 PapD-like: Flagellar- 21.0 4.4E+02 0.0095 21.1 8.4 59 209-279 15-82 (102)
150 PRK09918 putative fimbrial cha 20.9 5.2E+02 0.011 24.7 8.3 65 1-69 4-91 (230)
151 PRK15211 fimbrial chaperone pr 20.5 3.4E+02 0.0074 26.0 6.9 17 54-70 75-91 (229)
152 PRK07440 hypothetical protein; 20.4 99 0.0022 23.5 2.6 26 42-67 35-64 (70)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=8.6e-108 Score=878.17 Aligned_cols=533 Identities=70% Similarity=1.198 Sum_probs=439.5
Q ss_pred cceEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCC
Q 008799 21 SAVRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQC 100 (553)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~ 100 (553)
+++|+|+|+|++..+++||+++++|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||+|++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEeCCCCcceEEecChhhhhccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHHHHHHHHHhCC
Q 008799 101 PIQPGQSYVYNFTLTGQRGTLLWHAHISWLRATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQMG 180 (553)
Q Consensus 101 ~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 180 (553)
+|+||++|+|+|++.+++||||||||.+.+++||+|+|||+++.+.+++++..++|++|+++||++.+...++......+
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998669999999999988889999999999988766677677899999999999998888776666556
Q ss_pred CCCCCCceEEECCcCCCCCCCCCCC-eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeC
Q 008799 181 VAPNVSDAHTINGHPGPVTNCTSQG-FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIG 259 (553)
Q Consensus 181 ~~~~~~~~~~iNG~~~~~~~~~~~~-~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~ 259 (553)
..+.+++.++|||+.++.++|+... +.++|++||+|||||||+|+...+.|+|+||+|+|||+||.+++|+.++++.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 5566779999999988778887654 789999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEeCCCCCeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCccCCCCCCCCcccccccccccccccCCC
Q 008799 260 PGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLRSLNSKR 339 (553)
Q Consensus 260 pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~ 339 (553)
+||||||+|++++.+|+|||++....++...+.+....|+|+|.+......+..+..|..++......+...+..+..+.
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQ 320 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccC
Confidence 99999999999988899999998654432223445689999999865433222232333333221111222334443344
Q ss_pred CCCCCCCCcceEEEEEeeeeccCCcc----CCCCceeeEeeeceeeecCCchhhhhhhccccccccCCCCCCCCeeeccC
Q 008799 340 YPAKVPLTVDHSLLLTMAVAVNPCAT----CPNGTKVGAAMNNISFVMPTTALLQAHYYKISGVFTDDFPAKPPIAFNYT 415 (553)
Q Consensus 340 ~p~~~p~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 415 (553)
++..+|..+++++++.+.+....... ..++..+.|++|+++|..|+.+++.+.+.++.+.+..+++..+|+.++++
T Consensus 321 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 400 (539)
T TIGR03389 321 YPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYT 400 (539)
T ss_pred CCCCCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCC
Confidence 44455556777776666543321110 11345788999999999888888877665555656666777788777766
Q ss_pred CCC-CCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeE
Q 008799 416 GNY-TGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTIS 494 (553)
Q Consensus 416 ~~~-~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~ 494 (553)
+.. ..+.....+..++.++.|++||++|+|.+......||||||||+||||++|.|.|+..+....+|+.||++|||+.
T Consensus 401 ~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~ 480 (539)
T TIGR03389 401 GTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVG 480 (539)
T ss_pred CCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEE
Confidence 542 1122223467789999999999999996533355899999999999999999999876555578999999999999
Q ss_pred ecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 008799 495 VPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKGPNESLIPPPSDLPTC 553 (553)
Q Consensus 495 vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 553 (553)
||++||++|||++||||.|+|||||+||+..||+++|.+.++++..+.++++|.++|+|
T Consensus 481 vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 481 VPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred cCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999999999999999999999998888778899999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=3.1e-105 Score=849.82 Aligned_cols=518 Identities=28% Similarity=0.451 Sum_probs=419.6
Q ss_pred ccccceEEEEEEEEEEEeeccc--ceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCC
Q 008799 18 LVESAVRHYNFTVVMTNMTKLC--ASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPA 95 (553)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~ 95 (553)
-|+++.++|+|+|++..+++|| ..+++++||||+|||+|++++||+|+|+|+|+|+++|+|||||++|..++|+||++
T Consensus 22 ~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~ 101 (596)
T PLN00044 22 GAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVG 101 (596)
T ss_pred ccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCC
Confidence 3678889999999999999999 45689999999999999999999999999999999999999999999999999998
Q ss_pred CccCCCCCCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCC-cceEEEEeeeeccCHHHHH
Q 008799 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKAD-KEKIIVFGEWWKADVEAVI 173 (553)
Q Consensus 96 ~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~-~e~~l~~~d~~~~~~~~~~ 173 (553)
+ |||||+||++|+|+|++.+++||||||+|...|+ +||+|+|||++++..+.|+...+ +|.+|+++||++.+...+
T Consensus 102 ~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~- 179 (596)
T PLN00044 102 G-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRAL- 179 (596)
T ss_pred C-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHH-
Confidence 8 9999999999999999966899999999999998 89999999999877666665434 799999999999886654
Q ss_pred HHHHhCCCCCCCCceEEECCcCCCCCCCCC----CC-eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcc
Q 008799 174 NQATQMGVAPNVSDAHTINGHPGPVTNCTS----QG-FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYT 248 (553)
Q Consensus 174 ~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~----~~-~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~ 248 (553)
......|.....++.++|||+....++|+. .. +.++|++||+|||||||++....+.|+|+||+|+|||+||.++
T Consensus 180 ~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v 259 (596)
T PLN00044 180 RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYT 259 (596)
T ss_pred HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCccc
Confidence 334444544456799999999654456652 12 6899999999999999999999999999999999999999999
Q ss_pred cceEeeEEEeCCCccEEEEEEeCCCCC-eeEEEEee-ccccccccCCccEEEEEEEcCCCCCCCCccCCCCC-CCCcccc
Q 008799 249 KPFKTDTIFIGPGQTTNALLTADKKIG-KYLITISP-FMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPA-INATEVT 325 (553)
Q Consensus 249 ~p~~~d~~~l~pgeR~dv~v~~~~~~g-~~~i~~~~-~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~-~~~~~~~ 325 (553)
+|+.++.|.|++||||||+|++++.++ +|||++.. +..+ ..+++..+.|||+|.++........|..|. +++....
T Consensus 260 ~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~-~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~ 338 (596)
T PLN00044 260 SQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDA-AVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFS 338 (596)
T ss_pred CceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccC-ccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhh
Confidence 999999999999999999999999765 89999864 2222 124556788999999865422111344443 4444333
Q ss_pred cccccccccccCCCCCCCCCCCcceEEEEEeeeec-cCC-ccCCCCceeeEeeeceeeecCCchhhhhhhccccccccCC
Q 008799 326 NTFSDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAV-NPC-ATCPNGTKVGAAMNNISFVMPTTALLQAHYYKISGVFTDD 403 (553)
Q Consensus 326 ~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~-~~~-~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~~ 403 (553)
..+...++.+..+..+...|...+....+++.... ..+ .......++.|++|+.+|..|+.+++.+++.+.++.+..+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~ 418 (596)
T PLN00044 339 INQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLD 418 (596)
T ss_pred hhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCC
Confidence 33334454443333333334333443333332111 011 0001113688999999999999999988877888888888
Q ss_pred CCCCCCeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCC
Q 008799 404 FPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFN 483 (553)
Q Consensus 404 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~ 483 (553)
||..||.. ....++.++.+++|++|||+|+|.. ...||||||||+|+||+.|.|+|++. +...+|
T Consensus 419 fp~~pp~~-----------~~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~N 483 (596)
T PLN00044 419 FPNHPMNR-----------LPKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVGMDYGLWTDN-SRGTYN 483 (596)
T ss_pred CCCCCCcc-----------ccccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEeecCCCCCCC-cccccc
Confidence 88877731 1123567889999999999999953 45899999999999999999999965 456899
Q ss_pred CCCCCcceeeEecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCCCC-CCCCCCCCCCCCCC
Q 008799 484 LVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKGP-NESLIPPPSDLPTC 553 (553)
Q Consensus 484 ~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~-~~~~~~~p~~~~~c 553 (553)
+.||.+||||.||++||++|||++||||.|+|||||+.|...||.++|.|+++.+. .+.+++||.++++|
T Consensus 484 l~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 484 KWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred cCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999876 67899999999999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=5.2e-104 Score=836.35 Aligned_cols=499 Identities=27% Similarity=0.465 Sum_probs=403.0
Q ss_pred cccccceEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCC
Q 008799 17 ALVESAVRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAY 96 (553)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~ 96 (553)
..+.+++++|+|+|++..+++||+++.+++||||+|||+|++++||+|+|+|+|+|+++|+|||||++|.+++|+||+++
T Consensus 22 ~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~ 101 (543)
T PLN02991 22 VAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG 101 (543)
T ss_pred hhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC
Confidence 33567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHHHHHHH
Q 008799 97 ITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQ 175 (553)
Q Consensus 97 ~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 175 (553)
|||+|+||++|+|+|++.+++||||||+|.+.|+ +||+|+|||++++..+.|+..+++|++++++||++++...+...
T Consensus 102 -tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~ 180 (543)
T PLN02991 102 -TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ 180 (543)
T ss_pred -CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH
Confidence 9999999999999999866899999999999888 89999999999876666666678899999999999886654433
Q ss_pred HHhCCCCCCCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeE
Q 008799 176 ATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDT 255 (553)
Q Consensus 176 ~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~ 255 (553)
...+.....+|.++|||+... +.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++
T Consensus 181 -~~~~~~~~~~d~~liNG~~~~--------~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~ 251 (543)
T PLN02991 181 -LDNGGKLPLPDGILINGRGSG--------ATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSS 251 (543)
T ss_pred -hhcCCCCCCCCEEEEccCCCC--------ceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeE
Confidence 334444557899999999531 67999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccEEEEEEeCCCCCeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCccCCCCCCCCcccccccccccccc
Q 008799 256 IFIGPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLRSL 335 (553)
Q Consensus 256 ~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l 335 (553)
+.|++||||||+|++++.+|+|||++...... ......|||+|.++........|..|. +......+....+..
T Consensus 252 l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~~~~p~~p~--~~~~~~~~~~~~~~~ 325 (543)
T PLN02991 252 LDVHVGQSYSVLITADQPAKDYYIVVSSRFTS----KILITTGVLHYSNSAGPVSGPIPDGPI--QLSWSFDQARAIKTN 325 (543)
T ss_pred EEEcCCcEEEEEEECCCCCCcEEEEEeeccCC----CCcceEEEEEeCCCCCCCCCCCCCCCc--cccccccchhhhhhc
Confidence 99999999999999999889999998753221 234578999999875422111222221 111111111111111
Q ss_pred cCCCCCCCCCCC--------cceEEEEEeeeeccCCccCCCCceeeEeeeceeeecCCchhhhhhhccccccccCC-CCC
Q 008799 336 NSKRYPAKVPLT--------VDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHYYKISGVFTDD-FPA 406 (553)
Q Consensus 336 ~~~~~p~~~p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~ 406 (553)
..+..+...|.. .++.+.+...+.. .+| ++.|++|+.+|..|+.++|.+++.+++|.|..+ ++.
T Consensus 326 l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------~~g-~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~ 398 (543)
T PLN02991 326 LTASGPRPNPQGSYHYGKINITRTIRLANSAGN------IEG-KQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPD 398 (543)
T ss_pred ccCCCCCCCCCccccccccccceeEEEeecccc------cCc-eEEEEECCCccCCCCCChhhhhhhcccCccccccccc
Confidence 112112222222 1222222211111 123 578999999999999999888777777776544 444
Q ss_pred CCCeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCC
Q 008799 407 KPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVD 486 (553)
Q Consensus 407 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~ 486 (553)
.+|. ........++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. +...+|+.|
T Consensus 399 ~~~~-----------~~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~n 463 (543)
T PLN02991 399 QPTN-----------GAIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGKWSAA-SRKVYNLND 463 (543)
T ss_pred cCCC-----------CccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCCCCcc-cccccCCCC
Confidence 3331 11123456788999999999999954 45899999999999999999999876 456799999
Q ss_pred CCcceeeEecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 008799 487 PVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKGPNESLIPPPSDLPTC 553 (553)
Q Consensus 487 p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 553 (553)
|++|||+.||++||++|||++||||.|+|||||..|+..||.+++.|+++.+..+.+++||.++|+|
T Consensus 464 P~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 464 AVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred CCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 9999999999999999999999999999999999999999999999999999889999999999999
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=2.2e-103 Score=833.04 Aligned_cols=508 Identities=25% Similarity=0.431 Sum_probs=408.0
Q ss_pred cccceEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCcc
Q 008799 19 VESAVRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYIT 98 (553)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~t 98 (553)
...++++|+|+|++...++||+.+++++||||+|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||+++ +
T Consensus 12 ~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-t 90 (536)
T PLN02792 12 KADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-T 90 (536)
T ss_pred hcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-C
Confidence 334457999999999999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred CCCCCCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHHHHHHHHH
Q 008799 99 QCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQAT 177 (553)
Q Consensus 99 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 177 (553)
||||+||++|+|+|++++++||||||+|...|+ +||+|+|||.++++.+.+++.+++|++++++||++++...+ ....
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~-~~~~ 169 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTL-KKIL 169 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHH-HHHh
Confidence 999999999999999966899999999999988 89999999988765556666778899999999999886653 3333
Q ss_pred hCCCC-CCCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEE
Q 008799 178 QMGVA-PNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTI 256 (553)
Q Consensus 178 ~~g~~-~~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~ 256 (553)
..+.. +..+|.++|||+...+ .+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++|
T Consensus 170 ~~g~~~~~~~d~~liNG~~~~~------~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l 243 (536)
T PLN02792 170 DGGRKLPLMPDGVMINGQGVSY------VYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSL 243 (536)
T ss_pred hccCcCCCCCCEEEEeccCCCC------cceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEE
Confidence 34433 3478999999996421 1779999999999999999999999999999999999999999999999999
Q ss_pred EeCCCccEEEEEEeCCCCCeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCccCCCCCCCCccccccccccccccc
Q 008799 257 FIGPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLRSLN 336 (553)
Q Consensus 257 ~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~ 336 (553)
.|+|||||||+|++++.+|+|+|++.....+ .+....|||+|.++....+ ..+..|.+++......+...++.+.
T Consensus 244 ~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l 318 (536)
T PLN02792 244 DIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA----AKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNL 318 (536)
T ss_pred EEccCceEEEEEEcCCCCceEEEEEEeccCC----CCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhcc
Confidence 9999999999999999889999998753221 2346789999998654321 1233343444333222222333333
Q ss_pred CCCCCCCCCCCcceEEEEEeeeec-cCCccCCCCceeeEeeeceeeecCCchhhhhhhccccccccC-CCCCCCCeeecc
Q 008799 337 SKRYPAKVPLTVDHSLLLTMAVAV-NPCATCPNGTKVGAAMNNISFVMPTTALLQAHYYKISGVFTD-DFPAKPPIAFNY 414 (553)
Q Consensus 337 ~~~~p~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~ 414 (553)
.+..+..+|...++...+++.... ..+........+.|++|+.+|..|++++|.+++.++.|.+.. +++..||...+
T Consensus 319 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~- 397 (536)
T PLN02792 319 TASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGG- 397 (536)
T ss_pred CCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCC-
Confidence 333333444332222111111110 000000011357899999999999999998877666676654 36666663211
Q ss_pred CCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeE
Q 008799 415 TGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTIS 494 (553)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~ 494 (553)
...++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. +...+|+.||++||||.
T Consensus 398 ---------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nP~~RdTv~ 464 (536)
T PLN02792 398 ---------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA-SRREYNLKDAISRSTTQ 464 (536)
T ss_pred ---------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-cccccCcCCCCccceEE
Confidence 123567889999999999999953 45799999999999999999999874 45689999999999999
Q ss_pred ecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 008799 495 VPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKGPNESLIPPPSDLPTC 553 (553)
Q Consensus 495 vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 553 (553)
||++||++|||++||||.|+||||+.+|+..||.++|.|+++.+..+.+++||.++++|
T Consensus 465 v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 465 VYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred ECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 99999999999999999999999999999999999999999999888999999999999
No 5
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=4.4e-103 Score=834.77 Aligned_cols=525 Identities=24% Similarity=0.445 Sum_probs=408.0
Q ss_pred ChHHHHHHHHHHhhccc---ccccceEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCce
Q 008799 1 MAYLIRAILLATFMFPA---LVESAVRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVT 77 (553)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~ 77 (553)
|...|+++|+++++.++ .+.++.++|+|+|++...++||+.+++++||||+|||+|++++||+|+|+|+|+|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~tt 81 (552)
T PLN02354 2 MGGRLLAVLLCLAAAVALVVRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFL 81 (552)
T ss_pred chHHHHHHHHHHHHHHHHhhhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcc
Confidence 45566666666655332 245678999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcc
Q 008799 78 IHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKE 156 (553)
Q Consensus 78 iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e 156 (553)
|||||++|..++|+||+|+ |||+|+||++|+|+|++.+++||||||+|...|+ +||+|+|||+++...+.+++..++|
T Consensus 82 iHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e 160 (552)
T PLN02354 82 LTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDD 160 (552)
T ss_pred cccccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCce
Confidence 9999999999999999999 9999999999999999866899999999999998 8999999999987666667667889
Q ss_pred eEEEEeeeeccCHHHHHHHHHhCCCCCCCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCc
Q 008799 157 KIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGH 236 (553)
Q Consensus 157 ~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh 236 (553)
++++++|||+++...+.. ....+.....++.++|||+.+..+ ....+.++|++||+|||||||+|....+.|+|+||
T Consensus 161 ~~l~l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~~~~--~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH 237 (552)
T PLN02354 161 YTVLIGDWYTKSHTALKK-FLDSGRTLGRPDGVLINGKSGKGD--GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGH 237 (552)
T ss_pred EEEEeeeeccCCHHHHHH-HHhcCCCCCCCCeEEEeCCcCCCC--CCCceEEEECCCCEEEEEEEecCCCceEEEEECCc
Confidence 999999999998665433 344444344579999999965322 12238899999999999999999999999999999
Q ss_pred eEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCccCCC
Q 008799 237 NLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNV 316 (553)
Q Consensus 237 ~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~ 316 (553)
+|+|||+||.+++|..+++|.|++||||||+|++++.+|+|+|++.....+ .+....|+|+|.++.....+..|..
T Consensus 238 ~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~~~~~p~~ 313 (552)
T PLN02354 238 KMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK----KVLTTTGIIRYEGGKGPASPELPEA 313 (552)
T ss_pred eEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccC----CCccEEEEEEECCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999889999998732111 2356789999998654332222222
Q ss_pred CC-CCCcc-cccccccccccccCCCCCCCC----CCCcceEEEEEeeeeccCCccCCCCceeeEeeeceeeecCCchhhh
Q 008799 317 PA-INATE-VTNTFSDNLRSLNSKRYPAKV----PLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQ 390 (553)
Q Consensus 317 p~-~~~~~-~~~~~~~~l~~l~~~~~p~~~----p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~ 390 (553)
|. +.... ....+...+........+... ....++++.+...... .+ ....|++|+++|..|+.++|.
T Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~-g~~~~~iNn~s~~~p~~P~L~ 386 (552)
T PLN02354 314 PVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASK------VD-GKLRYALNGVSHVDPETPLKL 386 (552)
T ss_pred CcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEeccccc------CC-ceEEEEECCccCCCCCCChHH
Confidence 21 00000 000111111111101111000 0112233333221111 12 257799999999999988887
Q ss_pred hhhcccc-ccccCC-CCCCCCeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEee
Q 008799 391 AHYYKIS-GVFTDD-FPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGK 468 (553)
Q Consensus 391 ~~~~~~~-~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~ 468 (553)
+.+.++. |.+..+ ++..+|...+ ....+..++.++.|++|||+|+|.. ...||||||||+||||++
T Consensus 387 ~~~~~~~~g~~~~~~~~~~pp~~~~---------~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~ 454 (552)
T PLN02354 387 AEYFGVADKVFKYDTIKDNPPAKIT---------KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAV 454 (552)
T ss_pred hhhhcccCCccccCccccCCccccC---------ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEee
Confidence 7554443 544322 3334442211 0123457789999999999999953 558999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCCCCCCCCCCCCC
Q 008799 469 GSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKGPNESLIPPPS 548 (553)
Q Consensus 469 g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~ 548 (553)
|.|.|++.. ...+|+.||++|||+.||++||++|||++||||.|+|||||..|+..||.+.|.|.++.+..++++.+|.
T Consensus 455 G~G~~~~~~-~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~ 533 (552)
T PLN02354 455 EPGTWTPEK-RKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPE 533 (552)
T ss_pred cCCCCCccc-cccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCc
Confidence 999998753 5578999999999999999999999999999999999999999999999999999988887778888999
Q ss_pred CCCCC
Q 008799 549 DLPTC 553 (553)
Q Consensus 549 ~~~~c 553 (553)
+++.|
T Consensus 534 ~~~~C 538 (552)
T PLN02354 534 NALLC 538 (552)
T ss_pred ccccc
Confidence 99999
No 6
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.2e-102 Score=830.38 Aligned_cols=497 Identities=28% Similarity=0.484 Sum_probs=395.2
Q ss_pred cccceEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCcc
Q 008799 19 VESAVRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYIT 98 (553)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~t 98 (553)
+.+++|+|+|+|++..+++||+++++|+||||+|||+||+++||+|+|+|+|.|+++|+|||||++|.+++|+||+++ |
T Consensus 25 ~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~-t 103 (539)
T PLN02835 25 GEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG-T 103 (539)
T ss_pred ccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-C
Confidence 456889999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCCCCCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHHHHHHHHH
Q 008799 99 QCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQAT 177 (553)
Q Consensus 99 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 177 (553)
||+|+||++|+|+|++.+++||||||||...|+ +||+|+|||+++.+.+.+++.+++|++++++||++++...+... .
T Consensus 104 Q~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~-~ 182 (539)
T PLN02835 104 NCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR-L 182 (539)
T ss_pred cCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH-h
Confidence 999999999999999866899999999999998 89999999987665555666789999999999999987664333 3
Q ss_pred hCCCCCCCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEE
Q 008799 178 QMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIF 257 (553)
Q Consensus 178 ~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~ 257 (553)
..|.....++.++|||+.. +.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..++.+.
T Consensus 183 ~~g~~~~~~d~~liNG~~~---------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~ 253 (539)
T PLN02835 183 DSGKVLPFPDGVLINGQTQ---------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLD 253 (539)
T ss_pred hcCCCCCCCceEEEccccC---------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEE
Confidence 3454555789999999976 7799999999999999999999999999999999999999999999999999
Q ss_pred eCCCccEEEEEEeCCCCCeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCccCCCCCCCCccccccccc----ccc
Q 008799 258 IGPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSD----NLR 333 (553)
Q Consensus 258 l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~l~ 333 (553)
|++||||||+|++++.+|+|+|++...... ......|+++|.+.....++.+|..|... ......... .+.
T Consensus 254 i~~GqRydvlv~~~~~~g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~~~p~~p~~~-~~~~~~~~~~~~~~l~ 328 (539)
T PLN02835 254 VHVGQSVAVLVTLNQSPKDYYIVASTRFTR----QILTATAVLHYSNSRTPASGPLPALPSGE-LHWSMRQARTYRWNLT 328 (539)
T ss_pred ECcCceEEEEEEcCCCCCcEEEEEEccccC----CCcceEEEEEECCCCCCCCCCCCCCCccc-cccccchhhccccccC
Confidence 999999999999998889999998542211 23467899999886432222223222211 000000000 111
Q ss_pred cccCCCCCCC---C-CCCcceEEEEEeeeeccCCccCCCCceeeEeeeceeeecCCchhhhhhhccccccccCCC-CCCC
Q 008799 334 SLNSKRYPAK---V-PLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHYYKISGVFTDDF-PAKP 408 (553)
Q Consensus 334 ~l~~~~~p~~---~-p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~ 408 (553)
.......+.. . ....++++.+...... .+| ...|++|+++|..|+.+++.+++.+..+.++... ...+
T Consensus 329 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~g-~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~ 401 (539)
T PLN02835 329 ASAARPNPQGSFHYGKITPTKTIVLANSAPL------ING-KQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLP 401 (539)
T ss_pred ccccCCCCCccccccccCCCceEEEeccccc------cCC-eEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCC
Confidence 1111100000 0 0112333333221111 122 5679999999998888887665554445444221 1111
Q ss_pred CeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCC
Q 008799 409 PIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPV 488 (553)
Q Consensus 409 p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~ 488 (553)
+ +...+.++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+|+.||.
T Consensus 402 ~-----------~~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~~~~~~-~~~~nl~nP~ 466 (539)
T PLN02835 402 S-----------GGPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWTPAK-RSLYNLVDAL 466 (539)
T ss_pred C-----------CCccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCCCCccc-ccccCCCCCC
Confidence 1 111244577889999999999999964 558999999999999999999888653 4467899999
Q ss_pred cceeeEecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 008799 489 ERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKGPNESLIPPPSDLPTC 553 (553)
Q Consensus 489 ~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 553 (553)
+||||.||++||++|||+|||||.|+|||||++|+..||+++|.|+++.+..+.+++||.++|+|
T Consensus 467 ~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 467 TRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred ccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999889999999999999
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3.4e-102 Score=824.17 Aligned_cols=514 Identities=27% Similarity=0.451 Sum_probs=399.7
Q ss_pred HHHHHHHHHhhcccccccceEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCC
Q 008799 4 LIRAILLATFMFPALVESAVRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGV 83 (553)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~ 83 (553)
.++++.|+++-+..+ .+++++|+|+|++..+++||+.+++++||||+|||+||+++||+|+|+|+|.|+++|+|||||+
T Consensus 8 ~~~~~~~~~~~~~~~-~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl 86 (545)
T PLN02168 8 VFVLISLVILELSYA-FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGL 86 (545)
T ss_pred HHHHHHHHHHHhhhc-cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCc
Confidence 466677776666653 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcceEEEEe
Q 008799 84 RQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKEKIIVFG 162 (553)
Q Consensus 84 ~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~ 162 (553)
+|.+++|+||+|+ |||+|+||++|+|+|++.+++||||||||.+.|+ +||+|+|||+++++.+.+++.+++|++|+++
T Consensus 87 ~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~ 165 (545)
T PLN02168 87 QLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIG 165 (545)
T ss_pred cCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEE
Confidence 9999999999999 9999999999999999866899999999999998 9999999999988766667678899999999
Q ss_pred eeeccCHHHHHHHHHhCCCCCCCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEe
Q 008799 163 EWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVE 242 (553)
Q Consensus 163 d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via 242 (553)
||++.+...+.. ....+.....++.++|||+... .+.++|++||+|||||||+|+...+.|+|+||+|+|||
T Consensus 166 Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~~-------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa 237 (545)
T PLN02168 166 DWFYADHTVMRA-SLDNGHSLPNPDGILFNGRGPE-------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE 237 (545)
T ss_pred ecCCCCHHHHHh-hhhcCCCCCCCCEEEEeccCCC-------cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE
Confidence 999987554332 2333433456799999999631 17899999999999999999999999999999999999
Q ss_pred eCCCcccceEeeEEEeCCCccEEEEEEeCCCC-C---eeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCccCCCCC
Q 008799 243 VDSSYTKPFKTDTIFIGPGQTTNALLTADKKI-G---KYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPA 318 (553)
Q Consensus 243 ~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~-g---~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~ 318 (553)
+||.+++|..+++|.|++||||||+|++++.+ | .|||++.....+ ....+.|+|+|.++.......++..|.
T Consensus 238 ~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~p~p~~p~ 313 (545)
T PLN02168 238 TEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLDPVGPLPLAPA 313 (545)
T ss_pred ECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCCCCCCCCCCCc
Confidence 99999999999999999999999999998654 4 799998753222 235678999999865432111333333
Q ss_pred CCCcccccccccccccccCCCCCCCCCCC--------cceEEEEEeeeeccCCccCCCCceeeEeeeceeeecCCchhhh
Q 008799 319 INATEVTNTFSDNLRSLNSKRYPAKVPLT--------VDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQ 390 (553)
Q Consensus 319 ~~~~~~~~~~~~~l~~l~~~~~p~~~p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~ 390 (553)
..+......+...++....+..+...|.. .++.+.+.... . ..+| ...|++|+.+|..|+++++.
T Consensus 314 ~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~----~~~g-~~~~~iN~~s~~~p~~P~l~ 386 (545)
T PLN02168 314 LHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M----LSSG-KLRYTINGVSFVYPGTPLKL 386 (545)
T ss_pred ccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc--c----ccCc-eEEEEECCCccCCCCCchhh
Confidence 33322111111122211122111222221 12222221111 0 0123 57899999999999888876
Q ss_pred hhhccccccccC-CCCCCCCeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeC
Q 008799 391 AHYYKISGVFTD-DFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKG 469 (553)
Q Consensus 391 ~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g 469 (553)
+++.++++.+.. +++..||. .....++.++.++.|++|||+|+|.. ...||||||||+||||++|
T Consensus 387 ~~~~~~~~~~~~~~~~~~p~~-----------~~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g 452 (545)
T PLN02168 387 VDHFQLNDTIIPGMFPVYPSN-----------KTPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYG 452 (545)
T ss_pred hhhcccccccccCCCccCCCc-----------CccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECC
Confidence 655443332222 24443331 00112356789999999999999953 4589999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCCC------CCCCC
Q 008799 470 SGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKG------PNESL 543 (553)
Q Consensus 470 ~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~------~~~~~ 543 (553)
.|.|++.. ...+|+.||++|||+.||++||++|||++||||.|+|||||++|...||.+.+.|+++.. ..+.+
T Consensus 453 ~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~ 531 (545)
T PLN02168 453 FGAWSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDE 531 (545)
T ss_pred CCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccc
Confidence 99998653 457899999999999999999999999999999999999998888888888888864433 24678
Q ss_pred CCCCCCCCCC
Q 008799 544 IPPPSDLPTC 553 (553)
Q Consensus 544 ~~~p~~~~~c 553 (553)
+.||+++++|
T Consensus 532 ~~~P~~~~~c 541 (545)
T PLN02168 532 NPIPGNVIRC 541 (545)
T ss_pred cCCChhhccc
Confidence 8999999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-100 Score=804.36 Aligned_cols=527 Identities=48% Similarity=0.860 Sum_probs=467.7
Q ss_pred cccccccceEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCC
Q 008799 15 FPALVESAVRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGP 94 (553)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv 94 (553)
+...+.++.+.|+|+++...+.++|.++.++++||++|||+|+|++||+|.|+|.|.++++++|||||+.|..++|+||
T Consensus 20 ~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG- 98 (563)
T KOG1263|consen 20 FFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG- 98 (563)
T ss_pred HHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC-
Confidence 4445788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeecc-CHHHH
Q 008799 95 AYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKA-DVEAV 172 (553)
Q Consensus 95 ~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~~ 172 (553)
+.+|||||+||++|+|+|+++++.||||||+|.+.++ +|++|+|||.++...++|++++++|++|+++|||.+ +...+
T Consensus 99 ~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l 178 (563)
T KOG1263|consen 99 VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNL 178 (563)
T ss_pred CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHH
Confidence 8999999999999999999988999999999999999 899999999999988889999999999999999996 66666
Q ss_pred HHHHHhCCCCCCCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceE
Q 008799 173 INQATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFK 252 (553)
Q Consensus 173 ~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~ 252 (553)
.......+..+..+|..+|||+.+..++| .+.++|++||+|||||+|+|....+.|+|.||+|+|+++||.+++|..
T Consensus 179 ~~~~~~~~~~p~~~D~~~iNg~~g~~~~~---~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~ 255 (563)
T KOG1263|consen 179 KNFLDRTGALPNPSDGVLINGRSGFLYNC---TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFT 255 (563)
T ss_pred HHhhccCCCCCCCCCceEECCCCCcccCc---eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeee
Confidence 66666666666668999999999988999 389999999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCccEEEEEEeCCCCCeeEEEEeeccccc-cccCCccEEEEEEEcCCCCCC---CCccCCCCCCCCccccccc
Q 008799 253 TDTIFIGPGQTTNALLTADKKIGKYLITISPFMDTI-VAVNNVTGIAFLRYKGTVAFS---STTLTNVPAINATEVTNTF 328 (553)
Q Consensus 253 ~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~ail~y~~~~~~~---~~~~~~~p~~~~~~~~~~~ 328 (553)
+++|.|.||||++|+|++++.+++|+|.+.++.++. ..+ +....++++|.+..... .+..+.+|...+......+
T Consensus 256 ~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~ 334 (563)
T KOG1263|consen 256 TDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQ 334 (563)
T ss_pred eceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhh
Confidence 999999999999999999999999999998876643 223 67789999999843222 1233455665666666667
Q ss_pred ccccccccCCCCCCCCCCCcceEEEEEeeeeccCCccC-CCCceeeEeeeceeeecCCc-hhhhhhhccccccccCCCCC
Q 008799 329 SDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATC-PNGTKVGAAMNNISFVMPTT-ALLQAHYYKISGVFTDDFPA 406 (553)
Q Consensus 329 ~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~ 406 (553)
...++.+.....+...|.+.++...++++.+...+++. .++.+..+++|+.+|+.|++ .+++.++....+.+..+++.
T Consensus 335 ~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~ 414 (563)
T KOG1263|consen 335 ARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPD 414 (563)
T ss_pred hhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCC
Confidence 77888887777788889888888777777666555443 34567889999999999987 56777888777888888999
Q ss_pred CCCeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCC-CCCCCC
Q 008799 407 KPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDP-QKFNLV 485 (553)
Q Consensus 407 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~-~~~~~~ 485 (553)
.|+..+++++ .+.++.++.+++++.||++|+|.+......||||||||.|||++.|.|+|++.++. ..+|+.
T Consensus 415 ~P~~~~~~~~-------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~ 487 (563)
T KOG1263|consen 415 KPPIKFDYTG-------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLV 487 (563)
T ss_pred CCccccCCcc-------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccC
Confidence 8887777665 35678899999999999999998876677899999999999999999999995555 689999
Q ss_pred CCCcceeeEecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCCCCCCCCCCCCCCCCCC
Q 008799 486 DPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKGPNESLIPPPSDLPTC 553 (553)
Q Consensus 486 ~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 553 (553)
||..||||.|||+||++|||.|||||.|+|||||++|...||.++|+|.++..+.+++.+||.+.++|
T Consensus 488 dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 488 DPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred CCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=4.4e-96 Score=788.89 Aligned_cols=526 Identities=35% Similarity=0.607 Sum_probs=397.2
Q ss_pred HHHHHHHHHhhcccccccceEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCC-CCCceeeeCC
Q 008799 4 LIRAILLATFMFPALVESAVRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHV-KYNVTIHWHG 82 (553)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG 82 (553)
+.+|+++++-+++..+.+++|+|+|+|++..+++||+++++|+|||++|||+|++++||+|+|+|+|.+ .++++|||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG 84 (566)
T PLN02604 5 LALFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHG 84 (566)
T ss_pred hhHHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCC
Confidence 344444444445566778999999999999999999999999999999999999999999999999998 6899999999
Q ss_pred CcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcceEEEE
Q 008799 83 VRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKEKIIVF 161 (553)
Q Consensus 83 ~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~ 161 (553)
+++.+++|+||+++++||+|.||++++|+|++ +++||||||||...|+ +||+|+|||+++.+...++ .+++|.+|++
T Consensus 85 ~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l 162 (566)
T PLN02604 85 IRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIIL 162 (566)
T ss_pred CCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEe
Confidence 99999999999999999999999999999998 7999999999999888 8999999999887554455 3688999999
Q ss_pred eeeeccCHHHHHHHHHhCC-CCCCCCceEEECCcCCCCCCCC----------------C--CCeEEEEEcCCEEEEEEEe
Q 008799 162 GEWWKADVEAVINQATQMG-VAPNVSDAHTINGHPGPVTNCT----------------S--QGFTLHVESGKTYLLRIVN 222 (553)
Q Consensus 162 ~d~~~~~~~~~~~~~~~~g-~~~~~~~~~~iNG~~~~~~~~~----------------~--~~~~~~v~~G~~~rlRliN 222 (553)
+||+++...+......... .....++..+|||+.. +.|+ . ..+.+++++|++|||||||
T Consensus 163 ~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlIN 240 (566)
T PLN02604 163 TDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISS 240 (566)
T ss_pred eccccCCHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEe
Confidence 9999988766544322111 1123568999999853 3442 1 1257999999999999999
Q ss_pred cCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCC-eeEEEEeeccccccccCCccEEEEEE
Q 008799 223 AAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIG-KYLITISPFMDTIVAVNNVTGIAFLR 301 (553)
Q Consensus 223 ~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g-~~~i~~~~~~~~~~~~~~~~~~ail~ 301 (553)
+|+.+.+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|++++.+| .|||++.....+ .+.....|||+
T Consensus 241 a~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~---~~~~~~~aIL~ 317 (566)
T PLN02604 241 LTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRN---NTTPPGLAIFN 317 (566)
T ss_pred ccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCC---CCCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999998775 899998643322 12356789999
Q ss_pred EcCCCCC-CCCcc-CCCCCCCCcccccccccccccccCCCCCCCCCCCcceEEEEEeeeeccCCccCCCCceeeEeeece
Q 008799 302 YKGTVAF-SSTTL-TNVPAINATEVTNTFSDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNI 379 (553)
Q Consensus 302 y~~~~~~-~~~~~-~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 379 (553)
|.+.... .++.. +..+.+++..........+..+.. .+...+...++++.+...... ....+.|++|++
T Consensus 318 Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~-------~~~~~~w~in~~ 388 (566)
T PLN02604 318 YYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE-------VNGYRRWSVNNV 388 (566)
T ss_pred ECCCCCCCCCCCCCCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc-------cCCeEEEEECcc
Confidence 9964321 11111 111222221111111111111111 111223445666554322211 112567999999
Q ss_pred eeecCCchhhhhhhccccccccCCCCCCCCeeec---cCCCC-CCccccCCCeeEEEecCCCEEEEEEEcCCCC---CCC
Q 008799 380 SFVMPTTALLQAHYYKISGVFTDDFPAKPPIAFN---YTGNY-TGTLQTTNGTRLYRLAYNSTVQLVLQGTTVI---APE 452 (553)
Q Consensus 380 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~-~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~---~~~ 452 (553)
+|..|+.+++.+.+....+.++.+. ++..+. ++... ..+.....+..++.++.|++||++|+|.... ...
T Consensus 389 ~~~~p~~p~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~ 465 (566)
T PLN02604 389 SFNLPHTPYLIALKENLTGAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSE 465 (566)
T ss_pred cCCCCCCchhHhhhhcCCCcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCC
Confidence 9998877777665444334443211 111111 10000 0011123456778999999999999996422 356
Q ss_pred CCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEE
Q 008799 453 NHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFV 532 (553)
Q Consensus 453 ~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~ 532 (553)
.||||||||+||||++|.|.|++..+...+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.
T Consensus 466 ~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~ 545 (566)
T PLN02604 466 THPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFE 545 (566)
T ss_pred CCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEe
Confidence 79999999999999999999987666668899999999999999999999999999999999999999999999999996
Q ss_pred EeCCCCCCCCCCCCCCCCCCC
Q 008799 533 VDNGKGPNESLIPPPSDLPTC 553 (553)
Q Consensus 533 V~~~~~~~~~~~~~p~~~~~c 553 (553)
+. .+.++.+|.++++|
T Consensus 546 e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 546 EG-----IERVGKLPSSIMGC 561 (566)
T ss_pred eC-----hhhccCCCCCcCcc
Confidence 54 23667889999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=3.4e-96 Score=787.69 Aligned_cols=510 Identities=32% Similarity=0.561 Sum_probs=379.9
Q ss_pred ccceEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCC-CCceeeeCCCcccCCCCCCCCCCcc
Q 008799 20 ESAVRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAYIT 98 (553)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~t 98 (553)
.++.++|+|++++..+++||+++++++||||+|||+||+++||+|+|+|+|.|+ ++++|||||+++.+++|+||+|++|
T Consensus 20 ~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt 99 (574)
T PLN02191 20 SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT 99 (574)
T ss_pred ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc
Confidence 467899999999999999999999999999999999999999999999999997 7899999999999999999999999
Q ss_pred CCCCCCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHHHHHHHHH
Q 008799 99 QCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQAT 177 (553)
Q Consensus 99 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 177 (553)
||+|+||++|+|+|++ .++||||||||...|+ +||+|+|||+++.+...++ .+|+|++|+++||++...........
T Consensus 100 q~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~ 177 (574)
T PLN02191 100 QCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLS 177 (574)
T ss_pred cCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhc
Confidence 9999999999999998 7899999999999998 8999999998765433222 46899999999999986543322211
Q ss_pred hCC-CCCCCCceEEECCcCCCCCCCCC---------------------CCeEEEEEcCCEEEEEEEecCCCceEEEEEcC
Q 008799 178 QMG-VAPNVSDAHTINGHPGPVTNCTS---------------------QGFTLHVESGKTYLLRIVNAAVNDELFFKIAG 235 (553)
Q Consensus 178 ~~g-~~~~~~~~~~iNG~~~~~~~~~~---------------------~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~g 235 (553)
... .....++.++|||+.. +.|+. ...+++|++||+|||||||+|+...+.|+|+|
T Consensus 178 ~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idg 255 (574)
T PLN02191 178 SKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQG 255 (574)
T ss_pred cCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECC
Confidence 111 1124568999999853 33421 11369999999999999999999999999999
Q ss_pred ceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCC-CeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCc--
Q 008799 236 HNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKI-GKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTT-- 312 (553)
Q Consensus 236 h~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~-g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~-- 312 (553)
|+|+|||+||.+++|+.+++|.|++||||||+|++++.+ ++||||+.....+ .......||++|.+......+.
T Consensus 256 H~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~---~~~~~~~ail~Y~~~~~~~~p~~~ 332 (574)
T PLN02191 256 HKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRK---PNTTQALTILNYVTAPASKLPSSP 332 (574)
T ss_pred CeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccC---CCCCCceEEEEECCCCCCCCCCCC
Confidence 999999999999999999999999999999999999876 4899998643221 1222356999998765432111
Q ss_pred cCCCCCCCCcccccccccccccccCCCCCCCCCC-CcceEEEEEeeeeccCCccCCCCceeeEeeeceeeecCCchhhhh
Q 008799 313 LTNVPAINATEVTNTFSDNLRSLNSKRYPAKVPL-TVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQA 391 (553)
Q Consensus 313 ~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~ 391 (553)
.+..|.+.+......+...+ +.....+ ..|. ..+..+.+..... ......|++|+++|..|+.++|.+
T Consensus 333 ~~~~p~~~~~~~~~~~~~~~--~~~~~~~-~~p~~~~~~~~~~~~~~~--------~~~~~~~~~n~~s~~~p~~P~L~~ 401 (574)
T PLN02191 333 PPVTPRWDDFERSKNFSKKI--FSAMGSP-SPPKKYRKRLILLNTQNL--------IDGYTKWAINNVSLVTPATPYLGS 401 (574)
T ss_pred CCCCCcccccchhhcccccc--cccccCC-CCCCcccceEEEecccce--------eCCeEEEEECcccCcCCCcchHHH
Confidence 11223333322111111111 1110011 1221 2344443321110 112457999999999888877766
Q ss_pred hhccccccccCCCCCCC-CeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCC---CCCCCCeeecCCceEEEe
Q 008799 392 HYYKISGVFTDDFPAKP-PIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVI---APENHPTHLHGFNFFAVG 467 (553)
Q Consensus 392 ~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~---~~~~HP~HlHG~~f~Vl~ 467 (553)
.+....+.++.+.+... +..++..+.. .......+..++.++.|++|||+|+|.... ....||||||||+||||+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg 480 (574)
T PLN02191 402 VKYNLKLGFNRKSPPRSYRMDYDIMNPP-PFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLG 480 (574)
T ss_pred HhhccCcccccCCCcccccccccccCCC-ccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEE
Confidence 44433333333322111 1111111110 000112356688999999999999996411 256899999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCCCCCCCCCCCC
Q 008799 468 KGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKGPNESLIPPP 547 (553)
Q Consensus 468 ~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p 547 (553)
+|.|.|++......+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|... .+.++.+|
T Consensus 481 ~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~-----~~~~~~~p 555 (574)
T PLN02191 481 YGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEG-----LNRIGKIP 555 (574)
T ss_pred ecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecC-----hhhccCCC
Confidence 9999998755456789999999999999999999999999999999999999999999999999532 23445678
Q ss_pred CCCCCC
Q 008799 548 SDLPTC 553 (553)
Q Consensus 548 ~~~~~c 553 (553)
.+++.|
T Consensus 556 ~~~~~C 561 (574)
T PLN02191 556 DEALGC 561 (574)
T ss_pred cchhhh
Confidence 889999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=4.1e-95 Score=779.38 Aligned_cols=508 Identities=34% Similarity=0.599 Sum_probs=384.1
Q ss_pred eEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCC-CCceeeeCCCcccCCCCCCCCCCccCCC
Q 008799 23 VRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAYITQCP 101 (553)
Q Consensus 23 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~tq~~ 101 (553)
+|+|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|.|. ++++|||||+++.+++|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 389999999999999999999999999999999999999999999999995 8999999999999999999999999999
Q ss_pred CCCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHHHHHHHHHhCC
Q 008799 102 IQPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQMG 180 (553)
Q Consensus 102 i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 180 (553)
|+||++++|+|++ +++||||||||...|. +||+|+|||+++.+...++ .+|+|++|+++||+++...+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 7899999999999888 8999999999886544444 36899999999999987765433322111
Q ss_pred -CCCCCCceEEECCcCCCCCCCCC--------------------CCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEE
Q 008799 181 -VAPNVSDAHTINGHPGPVTNCTS--------------------QGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLT 239 (553)
Q Consensus 181 -~~~~~~~~~~iNG~~~~~~~~~~--------------------~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~ 239 (553)
.....++.++|||+.. ++|.. ....++|++|++|||||||+|+.+.+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 1113568999999853 23321 114589999999999999999999999999999999
Q ss_pred EEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCC-CeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCC--ccCCC
Q 008799 240 VVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKI-GKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSST--TLTNV 316 (553)
Q Consensus 240 via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~-g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~--~~~~~ 316 (553)
|||+||.+++|+.++.|.|++||||||+|++++.+ |+|||++...... .......|+|+|.+......+ ..+..
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~---~~~~~~~aiL~Y~~~~~~~~p~~~~~~~ 313 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRK---PNTPPGLTVLNYYPNSPSRLPPTPPPVT 313 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCC---CCCccEEEEEEECCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999866 4899998753221 123457899999875443211 11223
Q ss_pred CCCCCcccccccccccccccCCCCCCCCCCCcceEEEEEeeeeccCCccCCCCceeeEeeeceeeecCCchhhhhhhccc
Q 008799 317 PAINATEVTNTFSDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHYYKI 396 (553)
Q Consensus 317 p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~ 396 (553)
|.+.+......+. +..+.... ....|..+++++.+...... ......|++|+++|..|+.+++.+.+...
T Consensus 314 p~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~n~~s~~~p~~p~l~~~~~~~ 383 (541)
T TIGR03388 314 PAWDDFDRSKAFS--LAIKAAMG-SPKPPETSDRRIVLLNTQNK-------INGYTKWAINNVSLTLPHTPYLGSLKYNL 383 (541)
T ss_pred CCccccchhhccc--hhhhcccc-CCCCCCCCCcEEEEeccCcc-------cCceEEEEECcccCCCCCccHHHHHhhcC
Confidence 3333321111011 11111111 11233445666554322111 11245699999999988877776544333
Q ss_pred cccccCCCC-CCCCeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCC---CCCCCCeeecCCceEEEeeCCCC
Q 008799 397 SGVFTDDFP-AKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVI---APENHPTHLHGFNFFAVGKGSGN 472 (553)
Q Consensus 397 ~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~---~~~~HP~HlHG~~f~Vl~~g~g~ 472 (553)
.+.++.+.+ ...+..++... ...+...+.++.++.++.|++||++|+|.... ....||||||||+||||++|.|.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~ 462 (541)
T TIGR03388 384 LNAFDQKPPPENYPRDYDIFK-PPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGK 462 (541)
T ss_pred CccccCCCCcccccccccccC-CCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCC
Confidence 232221110 00011111000 01111224467788999999999999996422 24679999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCCCCCCCCCCCCCCCCC
Q 008799 473 FDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGKGPNESLIPPPSDLPT 552 (553)
Q Consensus 473 ~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~ 552 (553)
|+...+...+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+. .+.++.+|.++++
T Consensus 463 ~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~~~~~~P~~~~~ 537 (541)
T TIGR03388 463 FRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VEKVGKLPKEALG 537 (541)
T ss_pred CCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-----ccccCCCCccccC
Confidence 98665556789999999999999999999999999999999999999999999999999654 2456779999999
Q ss_pred C
Q 008799 553 C 553 (553)
Q Consensus 553 c 553 (553)
|
T Consensus 538 C 538 (541)
T TIGR03388 538 C 538 (541)
T ss_pred C
Confidence 9
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.4e-92 Score=757.33 Aligned_cols=489 Identities=29% Similarity=0.512 Sum_probs=371.6
Q ss_pred eEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCC-CCceeeeCCCcccCCCCCCCCCCccCCC
Q 008799 23 VRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAYITQCP 101 (553)
Q Consensus 23 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~tq~~ 101 (553)
...|+|+|++..++++|+.+++++|||++|||+|++++||+|+|+|+|.|+ ++|+|||||++|..++|+||+|++|||+
T Consensus 8 ~~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcp 87 (538)
T TIGR03390 8 QPDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWP 87 (538)
T ss_pred cccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCC
Confidence 357999999999999999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred CCCCCceEEEEEeC-CCCcceEEecChhhhhccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHHHHHHHHHhCC
Q 008799 102 IQPGQSYVYNFTLT-GQRGTLLWHAHISWLRATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQMG 180 (553)
Q Consensus 102 i~pG~~~~y~~~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 180 (553)
|+||++|+|+|+++ +++||||||||.+.|+.||+|+|||+++.+.++ .+|+|++|+++||+++...++........
T Consensus 88 I~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 164 (538)
T TIGR03390 88 IPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTP 164 (538)
T ss_pred CCCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccC
Confidence 99999999999983 589999999999999988999999998764433 35889999999999998776554433222
Q ss_pred C-CCCCCceEEECCcCCCCC---------CCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCce-EEEEeeCCCccc
Q 008799 181 V-APNVSDAHTINGHPGPVT---------NCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHN-LTVVEVDSSYTK 249 (553)
Q Consensus 181 ~-~~~~~~~~~iNG~~~~~~---------~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~~~ 249 (553)
. ....++.++|||+..... +|. .+.++|++||+|||||||+|+...+.|+|+||+ |+|||+||.+++
T Consensus 165 ~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~ 242 (538)
T TIGR03390 165 FTWSGETEAVLLNGKSGNKSFYAQINPSGSCM--LPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTK 242 (538)
T ss_pred CccCCCCceEEECCccccccccccccCCCCCc--ceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCC
Confidence 1 123458999999965321 221 378999999999999999999999999999999 999999999999
Q ss_pred ceEeeEEEeCCCccEEEEEEeCCC-------CCeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCccCCCCCCCCc
Q 008799 250 PFKTDTIFIGPGQTTNALLTADKK-------IGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINAT 322 (553)
Q Consensus 250 p~~~d~~~l~pgeR~dv~v~~~~~-------~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~ 322 (553)
|+.++.+.|++||||||+|++++. +|+||||+...... +.....|||+|.++.....+..+..+.....
T Consensus 243 P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~ 318 (538)
T TIGR03390 243 PAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDKASKLPSVPETPPLPLP 318 (538)
T ss_pred ceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCCCCCCCCCCCCCCCCcc
Confidence 999999999999999999999975 38999998753221 2245789999987544332211222211110
Q ss_pred cccccc-ccccccccCCCCCC-CCCCCcceEEEEEeeeeccCCccCCCCceeeEeeeceeeec--CCchhhhhhhccccc
Q 008799 323 EVTNTF-SDNLRSLNSKRYPA-KVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVM--PTTALLQAHYYKISG 398 (553)
Q Consensus 323 ~~~~~~-~~~l~~l~~~~~p~-~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~--p~~~~~~~~~~~~~~ 398 (553)
.....+ ...+.++.....+. ..+..+++++.+.+.+....+ + ....|++|+++|.. |+.++|...+.+.
T Consensus 319 ~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~----~-g~~~~~~N~~s~~~~~~~~P~L~~~~~~~-- 391 (538)
T TIGR03390 319 NSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPL----N-GRVAWLQNGLSWTESVRQTPYLVDIYENG-- 391 (538)
T ss_pred CcchhhhheeeEecCccccCCCCCCCcCceEEEEEcccccccc----C-CeEEEEECCcccCCCCCCCchHHHHhcCC--
Confidence 000000 01223332211110 113446777766655432110 2 35779999999975 5667665533211
Q ss_pred cccCCCCCCCCeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCC-----CCCCCCeeecCCceEEEeeCCCCC
Q 008799 399 VFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVI-----APENHPTHLHGFNFFAVGKGSGNF 473 (553)
Q Consensus 399 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~-----~~~~HP~HlHG~~f~Vl~~g~g~~ 473 (553)
.+..++ ++.. ........+..++.++.|++|||+|+|.... ....||||||||+||||++|.|.|
T Consensus 392 -----~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~ 461 (538)
T TIGR03390 392 -----LPATPN----YTAA-LANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEY 461 (538)
T ss_pred -----CCcCCC----cccc-cccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEccccccc
Confidence 011010 1100 0000112345678899999999999996311 257899999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcceeeEec----------CCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCC
Q 008799 474 DPNKDPQKFNLVDPVERNTISVP----------TAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGK 537 (553)
Q Consensus 474 ~~~~~~~~~~~~~p~~rDTv~vp----------~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~ 537 (553)
++......+++.||.+|||+.|| +++|++|||++||||.|+|||||+||+..||+++|.|.+.+
T Consensus 462 ~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 462 NATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred CCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChH
Confidence 87654557888999999999996 78999999999999999999999999999999999987643
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=6.9e-78 Score=642.68 Aligned_cols=422 Identities=25% Similarity=0.417 Sum_probs=314.3
Q ss_pred eEEEEEEEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCC
Q 008799 23 VRHYNFTVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPI 102 (553)
Q Consensus 23 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i 102 (553)
.++|+|++++..++++|+.+++|+|||++|||+||+++||+|+|+|+|.|+++|+|||||+++.+. +||+|+++||+|
T Consensus 45 ~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I 122 (587)
T TIGR01480 45 GTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGI 122 (587)
T ss_pred CceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCccccccc
Confidence 379999999999999999999999999999999999999999999999999999999999998754 999999999999
Q ss_pred CCCCceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHHHHHHHHHh---
Q 008799 103 QPGQSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQ--- 178 (553)
Q Consensus 103 ~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~--- 178 (553)
+||++|+|+|++ .++||||||||...|. +||+|+|||+++.+.++ .+|+|++|+|+||++.+...++.....
T Consensus 123 ~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~ 198 (587)
T TIGR01480 123 APGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAG 198 (587)
T ss_pred CCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhcccc
Confidence 999999999998 7899999999998887 89999999998755433 358999999999998776655433210
Q ss_pred ------------------CCCC---------------C-------CCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEE
Q 008799 179 ------------------MGVA---------------P-------NVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLL 218 (553)
Q Consensus 179 ------------------~g~~---------------~-------~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rl 218 (553)
.|.. + .....+++||+... ..+++.+++|++|||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~------~~~~~~v~~G~rvRL 272 (587)
T TIGR01480 199 HDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPA------GNWTGLFRPGEKVRL 272 (587)
T ss_pred cccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCC------CCceEEECCCCEEEE
Confidence 1100 0 00124789998531 126689999999999
Q ss_pred EEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeeccccccccCCccEEE
Q 008799 219 RIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIA 298 (553)
Q Consensus 219 RliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~a 298 (553)
||||+|+.+.+.|+|+||+|+||++||.+++|+.++.+.|+|||||||+|+.++ .|.|.|.+..... ...+.+
T Consensus 273 R~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~g~~~i~a~~~~~------~~~~~~ 345 (587)
T TIGR01480 273 RFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-DDAFTIFAQDSDR------TGYARG 345 (587)
T ss_pred EEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-CceEEEEEEecCC------CceEEE
Confidence 999999999999999999999999999999999999999999999999999875 5899999864321 234667
Q ss_pred EEEEcCCCCCCCCccCCCCC--CCCccc-c---------ccccc-------------------cc---------------
Q 008799 299 FLRYKGTVAFSSTTLTNVPA--INATEV-T---------NTFSD-------------------NL--------------- 332 (553)
Q Consensus 299 il~y~~~~~~~~~~~~~~p~--~~~~~~-~---------~~~~~-------------------~l--------------- 332 (553)
+|++.+....+.+.+...|. ..+... . ..+.. ++
T Consensus 346 ~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (587)
T TIGR01480 346 TLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLN 425 (587)
T ss_pred EEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCC
Confidence 88876542222221111110 000000 0 00000 00
Q ss_pred -------------------------------ccccCCCCCCCCCCCcceEEEEEeeeeccCCccCCCCceeeEeeeceee
Q 008799 333 -------------------------------RSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISF 381 (553)
Q Consensus 333 -------------------------------~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 381 (553)
..|.. ..+...+...++++.+.+.- +..++.|++||+.|
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~~~~p~r~~~~~L~g---------~m~~~~wtiNG~~~ 495 (587)
T TIGR01480 426 PLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHS-LFPPPDGRAPGREIELHLTG---------NMERFAWSFDGEAF 495 (587)
T ss_pred ccccccccCcccccCCCCcccccCCcceeehhhccc-cccccCcCCCCceEEEEEcC---------CCceeEEEECCccC
Confidence 00000 00000001122222211110 11234455555432
Q ss_pred ecCCchhhhhhhccccccccCCCCCCCCeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCC
Q 008799 382 VMPTTALLQAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGF 461 (553)
Q Consensus 382 ~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~ 461 (553)
.....+.++.|+.|+|.|.|.+ .+.|||||||+
T Consensus 496 --------------------------------------------~~~~pl~v~~Gervri~l~N~t---~~~HpmHlHG~ 528 (587)
T TIGR01480 496 --------------------------------------------GLKTPLRFNYGERLRVVLVNDT---MMAHPIHLHGM 528 (587)
T ss_pred --------------------------------------------CCCCceEecCCCEEEEEEECCC---CCCcceeEcCc
Confidence 1122367899999999999965 67999999999
Q ss_pred ceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEe
Q 008799 462 NFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVD 534 (553)
Q Consensus 462 ~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 534 (553)
.|+|+..+ |. .+.+|||+.|+|++.+.++|++++||.|+||||++.|++.|||..|+|.
T Consensus 529 ~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 529 WSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred eeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 99998753 21 1357899999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.6e-75 Score=618.89 Aligned_cols=421 Identities=19% Similarity=0.266 Sum_probs=296.7
Q ss_pred eEEEEEEEEEEEeecccc-eeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCC
Q 008799 23 VRHYNFTVVMTNMTKLCA-SKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCP 101 (553)
Q Consensus 23 ~~~~~l~~~~~~~~~~g~-~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~ 101 (553)
..+|+|++++...++++. ..++|+|||++|||+||+++||+|+|+++|.|+++|+|||||+++.+. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 346999999999999764 457999999999999999999999999999999999999999999876 99987 899
Q ss_pred CCCCCceEEEEEeCCCCcceEEecChh----hhh-ccceeeEEEcCCCCCCCCCCC--CCcceEEEEeeeeccCHHHHHH
Q 008799 102 IQPGQSYVYNFTLTGQRGTLLWHAHIS----WLR-ATVHGAIVILPKRSVPYPFPK--ADKEKIIVFGEWWKADVEAVIN 174 (553)
Q Consensus 102 i~pG~~~~y~~~~~~~~Gt~wYH~H~~----~~~-~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 174 (553)
|.||++++|+|++++++||||||+|.+ .|. +||+|+|||+++.+...+++. ..+|++|+++||+.+.......
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 999999999999966799999999975 344 899999999998765444443 3469999999998865443211
Q ss_pred HH-HhCCCCCCCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEE-cCceEEEEeeCCCcc-cce
Q 008799 175 QA-TQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKI-AGHNLTVVEVDSSYT-KPF 251 (553)
Q Consensus 175 ~~-~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~p~ 251 (553)
.. ......+..++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ +||+|+|||+||+++ +|+
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~---------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~ 269 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIY---------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPV 269 (523)
T ss_pred cccccccccCccCCeEEECCccc---------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCcc
Confidence 10 00111234568999999987 677875 579999999999999999998 799999999999987 899
Q ss_pred EeeEEEeCCCccEEEEEEeCCCCCeeEEEEeeccccc-c--ccCCccEEEEEEEcCCCCCCCCccCCCCCCCCccccccc
Q 008799 252 KTDTIFIGPGQTTNALLTADKKIGKYLITISPFMDTI-V--AVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTF 328 (553)
Q Consensus 252 ~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~-~--~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~ 328 (553)
.++.|.|+|||||||+|++++ .+.|.+....+.... . .++. ...++++.......... +|.
T Consensus 270 ~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~---~P~---------- 333 (523)
T PRK10965 270 KVSELPILMGERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPFDK--PLPVLRIQPLLISASGT---LPD---------- 333 (523)
T ss_pred EeCeEEECccceEEEEEEcCC-CceEEEEEecccCcccccccCCC--ceeEEEEeccCcCCCCc---CCh----------
Confidence 999999999999999999987 478998876432210 0 0111 23444544322111111 111
Q ss_pred ccccccccCCCCCCCCCCCcceEEEEEeeeecc---------CCc-----cCC---------CC------------ce-e
Q 008799 329 SDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVN---------PCA-----TCP---------NG------------TK-V 372 (553)
Q Consensus 329 ~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~---------~~~-----~~~---------~~------------~~-~ 372 (553)
.+..+.. .+. ......+++.+.+..... ... ... .| .+ +
T Consensus 334 --~l~~~~~--~~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (523)
T PRK10965 334 --SLASLPA--LPS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAF 408 (523)
T ss_pred --hhccCCC--CCc-ccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccc
Confidence 0111100 000 000012333322210000 000 000 00 00 0
Q ss_pred ----eEeeeceeeecCCchhhhhhhccccccccCCCCCCCCeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCC
Q 008799 373 ----GAAMNNISFVMPTTALLQAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTV 448 (553)
Q Consensus 373 ----~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~ 448 (553)
.|+|||++| ......+.++.|++++|.|.|.+
T Consensus 409 ~~~~~~~ING~~~-------------------------------------------~~~~~~~~~~~G~~e~w~i~N~~- 444 (523)
T PRK10965 409 DFHHANKINGKAF-------------------------------------------DMNKPMFAAKKGQYERWVISGVG- 444 (523)
T ss_pred cccccccCCCeEC-------------------------------------------CCCCcceecCCCCEEEEEEEeCC-
Confidence 012333222 11233457899999999999965
Q ss_pred CCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEe----cCceeeEEeecchhhHh
Q 008799 449 IAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRA----DNPGVWFLHCHLEVHTS 524 (553)
Q Consensus 449 ~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a----dnpG~w~~HCHil~H~d 524 (553)
..+.|||||||++|||++++.. ......+.|||||.|++ +.+.|++++ +++|.||||||||+|||
T Consensus 445 -~~~~Hp~HlHg~~F~Vl~~~g~---------~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed 513 (523)
T PRK10965 445 -DMMLHPFHIHGTQFRILSENGK---------PPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHED 513 (523)
T ss_pred -CCCccCeEEeCcEEEEEEecCC---------CCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhc
Confidence 2357999999999999999632 11223468999999988 555554444 56789999999999999
Q ss_pred ccceEEEEEe
Q 008799 525 WGLKMAFVVD 534 (553)
Q Consensus 525 ~GM~~~~~V~ 534 (553)
.|||..|+|.
T Consensus 514 ~GMM~~~~V~ 523 (523)
T PRK10965 514 TGMMLGFTVS 523 (523)
T ss_pred cCccceeEeC
Confidence 9999999873
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=9.3e-74 Score=602.14 Aligned_cols=402 Identities=15% Similarity=0.180 Sum_probs=291.8
Q ss_pred EEEEEEEEEEeeccc-ceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCC
Q 008799 25 HYNFTVVMTNMTKLC-ASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQ 103 (553)
Q Consensus 25 ~~~l~~~~~~~~~~g-~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~ 103 (553)
.++|+++....++++ ..+++|+|||++|||+||+++||+|+|+|+|.|+++|+|||||+++.+. .+||++ ++|.
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 489999999999984 6789999999999999999999999999999999999999999998876 467764 7899
Q ss_pred CCCceEEEEEeCCCCcceEEecChhh----hh-ccceeeEEEcCCCCCCCCCCC--CCcceEEEEeeeeccCHHHHHHHH
Q 008799 104 PGQSYVYNFTLTGQRGTLLWHAHISW----LR-ATVHGAIVILPKRSVPYPFPK--ADKEKIIVFGEWWKADVEAVINQA 176 (553)
Q Consensus 104 pG~~~~y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~ 176 (553)
||++++|+|++.+++||||||+|.++ |. +||+|+|||+++.+...+++. ..+|++|+++||+.+........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 99999999998667999999999876 43 899999999998765444433 34599999999987654321110
Q ss_pred HhCCCCCCCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEE-cCceEEEEeeCCCcc-cceEee
Q 008799 177 TQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKI-AGHNLTVVEVDSSYT-KPFKTD 254 (553)
Q Consensus 177 ~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~d 254 (553)
........++.++|||+.+ |.++|++| +|||||||+|+.+.+.|+| +||+|+|||+||+++ +|..++
T Consensus 201 -~~~~~g~~gd~~lvNG~~~---------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~ 269 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQS---------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVK 269 (471)
T ss_pred -ccccCCccCCeeEECCccC---------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeC
Confidence 1111234678999999987 77999885 7999999999999999999 899999999998876 899999
Q ss_pred EEEeCCCccEEEEEEeCCCCCeeEEEEeecccccc----ccCCc---cEEEEEEEcCCCCCCCCccCCCCCCCCcccccc
Q 008799 255 TIFIGPGQTTNALLTADKKIGKYLITISPFMDTIV----AVNNV---TGIAFLRYKGTVAFSSTTLTNVPAINATEVTNT 327 (553)
Q Consensus 255 ~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~----~~~~~---~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~ 327 (553)
.+.|+|||||||+|++++ .+.+.+++........ .+... ....+++......... .....|
T Consensus 270 ~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p---------- 337 (471)
T PRK10883 270 QLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPL-VTDNLP---------- 337 (471)
T ss_pred eEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccccccC-CCCcCC----------
Confidence 999999999999999986 3567666532110000 00000 0011222221100000 000000
Q ss_pred cccccccccCCCCCCCCCCCcceEEEEEeeeeccCCccCCCCceeeEeeeceeeecCCchhhhhhhccccccccCCCCCC
Q 008799 328 FSDNLRSLNSKRYPAKVPLTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHYYKISGVFTDDFPAK 407 (553)
Q Consensus 328 ~~~~l~~l~~~~~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 407 (553)
..+. ... ..+....+++.+.++. . .|.|||++|...
T Consensus 338 --~~l~---~~~---~~~~~~~~~~~~~l~~------------~-~~~INg~~~~~~----------------------- 373 (471)
T PRK10883 338 --MRLL---PDE---IMEGSPIRSREISLGD------------D-LPGINGALWDMN----------------------- 373 (471)
T ss_pred --hhhc---CCC---CCCCCCcceEEEEecC------------C-cCccCCcccCCC-----------------------
Confidence 0010 000 0111223333332211 1 256888766321
Q ss_pred CCeeeccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCC
Q 008799 408 PPIAFNYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDP 487 (553)
Q Consensus 408 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p 487 (553)
.....++.|++++|.|.|. +.|||||||+.|||++++... ....+.
T Consensus 374 --------------------~~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~~---------~~~~~~ 419 (471)
T PRK10883 374 --------------------RIDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGAM---------PFPEDR 419 (471)
T ss_pred --------------------cceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCCC---------CCcccc
Confidence 1124678999999999883 589999999999999996321 111234
Q ss_pred CcceeeEecCCcEEEEEEEecCce----eeEEeecchhhHhccceEEEEEeC
Q 008799 488 VERNTISVPTAGWTAIRFRADNPG----VWFLHCHLEVHTSWGLKMAFVVDN 535 (553)
Q Consensus 488 ~~rDTv~vp~~g~~~irf~adnpG----~w~~HCHil~H~d~GM~~~~~V~~ 535 (553)
.|||||.|+ +.+.|+++++++| .||||||||+|||.|||..|+|.+
T Consensus 420 gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 420 GWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred CcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 699999996 4699999998877 899999999999999999999964
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-59 Score=497.21 Aligned_cols=402 Identities=24% Similarity=0.340 Sum_probs=287.2
Q ss_pred ecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeC
Q 008799 36 TKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLT 115 (553)
Q Consensus 36 ~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~ 115 (553)
...+.....|.|||++|||+||+++||+|+|+++|.|.+.|++||||+.+++. +||++..+|+.+.||++++|.|+.
T Consensus 46 ~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~~~~~~~y~f~~- 122 (451)
T COG2132 46 FAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPGPGETPTYTFTQ- 122 (451)
T ss_pred eecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCCCCCcEEEeecC-
Confidence 33567889999999999999999999999999999998779999999888855 999999999999999999999997
Q ss_pred CCCcceEEecChhhhh-ccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHHHHHHHHHhCCCCCCCCceEEECCc
Q 008799 116 GQRGTLLWHAHISWLR-ATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGH 194 (553)
Q Consensus 116 ~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~ 194 (553)
+.+||||||+|.++|. +||+|++||+++.+.+. ..|++..+++.+|+.......... ........++..+|||+
T Consensus 123 ~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~vnG~ 197 (451)
T COG2132 123 DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGFPGDTLLVNGA 197 (451)
T ss_pred CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCCCCCeEEECCC
Confidence 6677999999999998 99999999999976654 347777888888876655543332 12223455689999997
Q ss_pred CCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCC
Q 008799 195 PGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKI 274 (553)
Q Consensus 195 ~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~ 274 (553)
.. +.+.++. ++||||++|+++.+.+.+++.+++|+|+++||.+++|..+|.+.|+||||+||++++.+ .
T Consensus 198 ~~---------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~ 266 (451)
T COG2132 198 IL---------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-G 266 (451)
T ss_pred cc---------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-C
Confidence 65 4455555 46999999999888888999999999999999999888899999999999999999997 5
Q ss_pred CeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCccCCCC--CCCCcccccccccccccccCCCCCCCCCCCcceEE
Q 008799 275 GKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVP--AINATEVTNTFSDNLRSLNSKRYPAKVPLTVDHSL 352 (553)
Q Consensus 275 g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~d~~~ 352 (553)
+.+.+.+.. .+.. + ...+..........+.+.....+ ...+. ....+...+... ....- ...+...
T Consensus 267 ~~~~l~~~~-~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~----~~~~~-~~~~~~~ 334 (451)
T COG2132 267 GAVTLTALG-EDMP---D--TLKGFRAPNPILTPSYPVLNGRVGAPTGDM-ADHAPVGLLVTI----LVEPG-PNRDTDF 334 (451)
T ss_pred CeEEEEecc-ccCC---c--eeeeeeccccccccccccccccccCCCcch-hhccccccchhh----cCCCc-ccccccc
Confidence 888888864 1110 0 01111111100000000000000 00000 000000000000 00000 0000101
Q ss_pred EEEeeeeccCCccCCCCceeeEeeeceeeecCCchhhhhhhccccccccCCCCCCCCeeeccCCCCCCccccCCCeeEEE
Q 008799 353 LLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTTNGTRLYR 432 (553)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 432 (553)
.+... -....|.+|++.|. +....+.
T Consensus 335 ~l~~~-----------~~~~~~~~n~~~~~-------------------------------------------~~~~~~~ 360 (451)
T COG2132 335 HLIGG-----------IGGYVWAINGKAFD-------------------------------------------DNRVTLI 360 (451)
T ss_pred hhhcc-----------cccccccccCccCC-------------------------------------------CCcCcee
Confidence 00000 01122444433221 1133467
Q ss_pred ecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecCcee
Q 008799 433 LAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNPGV 512 (553)
Q Consensus 433 ~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 512 (553)
++.|++++|+|.|.+ .+.||||+||+.|+|++.+ .......+.||||+.+.+++.++++|++++||.
T Consensus 361 ~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~----------~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~ 427 (451)
T COG2132 361 AKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD----------APAPGAAPGWKDTVLVAPGERLLVRFDADYPGP 427 (451)
T ss_pred ecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC----------CCcccccCccceEEEeCCCeEEEEEEeCCCCCc
Confidence 889999999999965 4899999999999999996 112234578999999999999999999999999
Q ss_pred eEEeecchhhHhccceEEEEEeC
Q 008799 513 WFLHCHLEVHTSWGLKMAFVVDN 535 (553)
Q Consensus 513 w~~HCHil~H~d~GM~~~~~V~~ 535 (553)
|+|||||++|++.|||..+.|..
T Consensus 428 ~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 428 WMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred eEEeccchhHhhcCCeeEEEecC
Confidence 99999999999999999998753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.4e-47 Score=383.11 Aligned_cols=265 Identities=21% Similarity=0.275 Sum_probs=217.1
Q ss_pred cccceEEEEEEEEEEEeec-ccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCC--CCceeeeCCCcccCCCCCCCCC
Q 008799 19 VESAVRHYNFTVVMTNMTK-LCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK--YNVTIHWHGVRQLRTGWYDGPA 95 (553)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~--~~~~iH~HG~~~~~~~~~DGv~ 95 (553)
+...+++|+|++++..++. +|..+.+|+|||++|||+|++++||+|+|+|+|.+. .++++||||.. ++||++
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~ 97 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGA 97 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCC
Confidence 4567899999999999885 699999999999999999999999999999999985 58999999963 379988
Q ss_pred CccCCCCCCCCceEEEEEeCCCCcceEEecChhh----hh-ccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHH
Q 008799 96 YITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISW----LR-ATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVE 170 (553)
Q Consensus 96 ~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~ 170 (553)
.++| |.||++++|+|++ +++||||||||.++ +. +||+|+|||++++.. +..|+|++|+++||+.+...
T Consensus 98 ~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~ 170 (311)
T TIGR02376 98 ALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDE 170 (311)
T ss_pred ccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEeccccc
Confidence 8877 9999999999998 78999999999654 44 899999999987532 24688999999999986532
Q ss_pred HHHHHH--HhCCCCCCCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcc
Q 008799 171 AVINQA--TQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYT 248 (553)
Q Consensus 171 ~~~~~~--~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~ 248 (553)
...... .........++.++|||+.+++. +.+++++|+++||||+|++..+.+.||++|+.+++++.||.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~------~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~ 244 (311)
T TIGR02376 171 GEGGAYEDDVAAMRTLTPTHVVFNGAVGALT------GDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFA 244 (311)
T ss_pred cccccccchHHHHhcCCCCEEEECCccCCCC------CCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCccc
Confidence 210000 00000123458999999975332 5579999999999999999989889999999999999999999
Q ss_pred cc-e-EeeEEEeCCCccEEEEEEeCCCCCeeEEEEeeccccccccCCccEEEEEEEcCCC
Q 008799 249 KP-F-KTDTIFIGPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTV 306 (553)
Q Consensus 249 ~p-~-~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 306 (553)
.| . .++++.|+||||+||+|++++ ||.|+++++.+... .+....+++.|.+..
T Consensus 245 ~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~----~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 245 NPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEA----FEKGAAAQVKVEGAW 299 (311)
T ss_pred CCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHH----HhCCCEEEEEECCCC
Confidence 65 3 489999999999999999997 79999999865432 133577999998654
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=4e-36 Score=256.60 Aligned_cols=116 Identities=40% Similarity=0.749 Sum_probs=108.9
Q ss_pred EEEEEEeecccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCce
Q 008799 29 TVVMTNMTKLCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSY 108 (553)
Q Consensus 29 ~~~~~~~~~~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~ 108 (553)
+|++..+.++|..+++|+|||++|||+||+++||+|+|+|+|.++++++|||||+++.+.+|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCC
Q 008799 109 VYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKR 144 (553)
Q Consensus 109 ~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~ 144 (553)
+|+|++++++||||||||.+++. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999965699999999999976 9999999999864
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=2.4e-29 Score=223.89 Aligned_cols=107 Identities=41% Similarity=0.812 Sum_probs=94.9
Q ss_pred CCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEE
Q 008799 425 TNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIR 504 (553)
Q Consensus 425 ~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~ir 504 (553)
..+..++.++.|++|+|+|.|.+ ...|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++||
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEE
Confidence 55678899999999999999965 56999999999999999987655433 345678899999999999999999999
Q ss_pred EEecCceeeEEeecchhhHhccceEEEEEeC
Q 008799 505 FRADNPGVWFLHCHLEVHTSWGLKMAFVVDN 535 (553)
Q Consensus 505 f~adnpG~w~~HCHil~H~d~GM~~~~~V~~ 535 (553)
|+++|||.|+|||||++|+|.|||+.|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999875
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=1.3e-26 Score=210.60 Aligned_cols=149 Identities=34% Similarity=0.613 Sum_probs=120.6
Q ss_pred cceEEEEeeeeccCHHHHHHHHHhCCC----CCCCCceEEECCcCCCCCCCCC------CCeEEEEEcCCEEEEEEEecC
Q 008799 155 KEKIIVFGEWWKADVEAVINQATQMGV----APNVSDAHTINGHPGPVTNCTS------QGFTLHVESGKTYLLRIVNAA 224 (553)
Q Consensus 155 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~~iNG~~~~~~~~~~------~~~~~~v~~G~~~rlRliN~~ 224 (553)
.|++|+++|||++.......+....+. .+..+++++|||+.. ++|+. ..+.+++++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 489999999999888776665444322 256789999999975 45552 239999999999999999999
Q ss_pred CCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeeccccccccCCccEEEEEEEcC
Q 008799 225 VNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKG 304 (553)
Q Consensus 225 ~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~ 304 (553)
+...+.|+|+||+|+|||+||.+++|..++++.|+|||||||+|++++.+|.|+|++................|+|+|.+
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999878999999962212222234566899999986
Q ss_pred C
Q 008799 305 T 305 (553)
Q Consensus 305 ~ 305 (553)
+
T Consensus 159 ~ 159 (159)
T PF00394_consen 159 A 159 (159)
T ss_dssp S
T ss_pred C
Confidence 3
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.75 E-value=1.4e-17 Score=147.71 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=81.8
Q ss_pred ccceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCC---CCceeeeCCCcccCCCCCCCCCCccCCCCCCC----Cc--e
Q 008799 38 LCASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK---YNVTIHWHGVRQLRTGWYDGPAYITQCPIQPG----QS--Y 108 (553)
Q Consensus 38 ~g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~---~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG----~~--~ 108 (553)
.++....+.++| .+||+|++++||+|+|+|+|.+. ....||+||......+.+||++.++|+++.|+ +. .
T Consensus 37 ~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 456667788888 56899999999999999999964 45677777776554455899999999998884 11 3
Q ss_pred EEEEEeCCCCcceEEecChhhhh-ccceeeEEEc
Q 008799 109 VYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVIL 141 (553)
Q Consensus 109 ~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~ 141 (553)
+++|+. .++||||||||..++. +||+|.|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 455655 5899999999998888 7999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.69 E-value=9.3e-15 Score=146.65 Aligned_cols=237 Identities=15% Similarity=0.072 Sum_probs=150.3
Q ss_pred CceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCC-ceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccE
Q 008799 186 SDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVN-DELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTT 264 (553)
Q Consensus 186 ~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~ 264 (553)
.+.|++||+.- . |.|+++.|+++++++.|.... ..+.+|+|++. +.||.. . ...|.||+++
T Consensus 47 ~~~~~~nG~~p-G-------P~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~---~---~~~I~PG~t~ 108 (311)
T TIGR02376 47 YQAMTFDGSVP-G-------PLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGA---A---LTQVNPGETA 108 (311)
T ss_pred EEEEEECCccc-C-------ceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCC---c---ceeECCCCeE
Confidence 36899999842 1 899999999999999998632 46779999874 457652 1 2238999999
Q ss_pred EEEEEeCCCCCeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCccCCCCCCCCcccccccccccccccCCCCCCCC
Q 008799 265 NALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLRSLNSKRYPAKV 344 (553)
Q Consensus 265 dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~ 344 (553)
.+.+.+++ +|.||+|||........ ...+..+.+....... .|
T Consensus 109 ty~F~~~~-~Gty~YH~H~~~~~~~q-~~~Gl~G~liV~~~~~--------~~--------------------------- 151 (311)
T TIGR02376 109 TLRFKATR-PGAFVYHCAPPGMVPWH-VVSGMNGAIMVLPREG--------LP--------------------------- 151 (311)
T ss_pred EEEEEcCC-CEEEEEEcCCCCchhHH-hhcCcceEEEeeccCC--------Cc---------------------------
Confidence 99999986 79999999943210000 0112233343332110 00
Q ss_pred CCCcceEEEEEee-eeccCC-----------ccCCCCceeeEeeeceeeecCCchhhhhhhccccccccCCCCCCCCeee
Q 008799 345 PLTVDHSLLLTMA-VAVNPC-----------ATCPNGTKVGAAMNNISFVMPTTALLQAHYYKISGVFTDDFPAKPPIAF 412 (553)
Q Consensus 345 p~~~d~~~~~~~~-~~~~~~-----------~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 412 (553)
..|+++.+.+. ...... ..+..+..-...+||+.+
T Consensus 152 --~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~------------------------------- 198 (311)
T TIGR02376 152 --EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVG------------------------------- 198 (311)
T ss_pred --CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccC-------------------------------
Confidence 01222221110 000000 000000000122232210
Q ss_pred ccCCCCCCccccCCCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCC--cc
Q 008799 413 NYTGNYTGTLQTTNGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPV--ER 490 (553)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~--~r 490 (553)
.......++.|++++|.|.|.+ ....+.||++|++|.++...... .++. ..
T Consensus 199 -------------~~~~~~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~DG~~------------~~~~~~~~ 251 (311)
T TIGR02376 199 -------------ALTGDNALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVTGKF------------ANPPNRDV 251 (311)
T ss_pred -------------CCCCCcccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEECCcc------------cCCCCCCc
Confidence 0011246788999999999975 34679999999999999984221 1222 26
Q ss_pred eeeEecCCcEEEEEEEecCceeeEEeecchhhH-hccceEEEEEeCCC
Q 008799 491 NTISVPTAGWTAIRFRADNPGVWFLHCHLEVHT-SWGLKMAFVVDNGK 537 (553)
Q Consensus 491 DTv~vp~~g~~~irf~adnpG~w~~HCHil~H~-d~GM~~~~~V~~~~ 537 (553)
||+.|.||....|.++++.||.|++|||...|. ..||++.++|+...
T Consensus 252 ~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 252 ETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred ceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECCCC
Confidence 899999999999999999999999999999998 77999999886443
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.65 E-value=6.7e-15 Score=158.56 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=142.3
Q ss_pred EEECCCCCC--CeEeecCCCEEEEEEEeCCC-CCceeeeCCCcccCCCCCCCCCC----ccCCCCCCCCceEEEEEeCCC
Q 008799 45 VTVNGKFPG--PTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAY----ITQCPIQPGQSYVYNFTLTGQ 117 (553)
Q Consensus 45 ~~~NG~~pG--P~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~pG~~~~y~~~~~~~ 117 (553)
+++||+.+. +++.+++|+++|+|+.|... ....++..|....-.. .||.+. +....|.||||++..++. ..
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 779999863 68999999999999999985 4567777776643221 688653 234568999999999987 46
Q ss_pred CcceEEecChhhhhccceeeEEEcCCC-CCC-CCCCCC----CcceEE------------EEe-----ee----------
Q 008799 118 RGTLLWHAHISWLRATVHGAIVILPKR-SVP-YPFPKA----DKEKII------------VFG-----EW---------- 164 (553)
Q Consensus 118 ~Gt~wYH~H~~~~~~Gl~G~liV~~~~-~~~-~~~~~~----~~e~~l------------~~~-----d~---------- 164 (553)
.|.|+..+...+. .|...+.+..... ..+ .+.... ..+.-. .+. +-
T Consensus 327 ~g~~~i~a~~~~~-~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDR-TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCC-CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 7899988764322 2333333332211 000 011000 000000 000 00
Q ss_pred ec--------------------------------c--------CHHHH--HHHHHh---------CCC------CCCC-C
Q 008799 165 WK--------------------------------A--------DVEAV--INQATQ---------MGV------APNV-S 186 (553)
Q Consensus 165 ~~--------------------------------~--------~~~~~--~~~~~~---------~g~------~~~~-~ 186 (553)
.+ + ..... +..... .+. .+.. .
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 00 0 00000 000000 000 0111 1
Q ss_pred ceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEE
Q 008799 187 DAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNA 266 (553)
Q Consensus 187 ~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv 266 (553)
..|+|||+.++. .+.|+++.|+++||||+|.+.+. +.+|+|||.|.+...||.+ +...+++.|.|||++++
T Consensus 486 ~~wtiNG~~~~~------~~pl~v~~Gervri~l~N~t~~~-HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~~~ 556 (587)
T TIGR01480 486 FAWSFDGEAFGL------KTPLRFNYGERLRVVLVNDTMMA-HPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKRSF 556 (587)
T ss_pred eEEEECCccCCC------CCceEecCCCEEEEEEECCCCCC-cceeEcCceeeeecCCCcc--cccCCceeeCCCCEEEE
Confidence 249999997631 14689999999999999988654 4599999999999888863 33458899999999999
Q ss_pred EEEeCCCCCeeEEEEee
Q 008799 267 LLTADKKIGKYLITISP 283 (553)
Q Consensus 267 ~v~~~~~~g~~~i~~~~ 283 (553)
.+++++ ||+|++|||.
T Consensus 557 ~f~ad~-pG~w~~HCH~ 572 (587)
T TIGR01480 557 RVTADA-LGRWAYHCHM 572 (587)
T ss_pred EEECCC-CeEEEEcCCC
Confidence 999997 7999999995
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.46 E-value=5.9e-13 Score=113.84 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=81.4
Q ss_pred cccccccceEEEEEEEE--EEEe-ec--ccceeeEE-EECCCCCCCeEeecCCCEEEEEEEeCCCCCc--eeeeCCCccc
Q 008799 15 FPALVESAVRHYNFTVV--MTNM-TK--LCASKSIV-TVNGKFPGPTLHAREDDNVIVRVTNHVKYNV--TIHWHGVRQL 86 (553)
Q Consensus 15 ~~~~~~~~~~~~~l~~~--~~~~-~~--~g~~~~~~-~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~--~iH~HG~~~~ 86 (553)
.+..+.++.++|+++|+ +..+ ++ .|.....| ++|+++..+.|+|++||+|+++++|..+.++ ++++||.
T Consensus 16 ~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi--- 92 (135)
T TIGR03096 16 LMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI--- 92 (135)
T ss_pred hccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc---
Confidence 44557778899999999 7777 44 57777666 9999999899999999999999999986544 4444332
Q ss_pred CCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhh
Q 008799 87 RTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR 131 (553)
Q Consensus 87 ~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~ 131 (553)
+..|.||++.+|+|.+ +++|+|||||-.|...
T Consensus 93 ------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~ 124 (135)
T TIGR03096 93 ------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKN 124 (135)
T ss_pred ------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChh
Confidence 1458999999999997 8999999999877644
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.46 E-value=2.9e-12 Score=137.18 Aligned_cols=232 Identities=15% Similarity=0.120 Sum_probs=141.0
Q ss_pred eeeEEEECCCCCCCeEeecCCCEEEEEEEeCCC-CCceeee-CC--CcccCCCCCCCCCC-----ccCCCCCCCCceEEE
Q 008799 41 SKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-YNVTIHW-HG--VRQLRTGWYDGPAY-----ITQCPIQPGQSYVYN 111 (553)
Q Consensus 41 ~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~-~~~~iH~-HG--~~~~~~~~~DGv~~-----~tq~~i~pG~~~~y~ 111 (553)
....+++||+. .|.+.+. |.++|+||.|... ....+.+ .| +.+.. .||.+. +.+..|.||||++..
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa---~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA---SDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE---eCCCcccCccEeCeEEECccceEEEE
Confidence 45678999996 5888885 6699999999974 5556666 44 33333 688543 234558999999999
Q ss_pred EEeCCCCcceEEecChhhhhccc--------eeeEEEcC--CC-CCCCC-----CCC-------CCcceEEEEeeeec--
Q 008799 112 FTLTGQRGTLLWHAHISWLRATV--------HGAIVILP--KR-SVPYP-----FPK-------ADKEKIIVFGEWWK-- 166 (553)
Q Consensus 112 ~~~~~~~Gt~wYH~H~~~~~~Gl--------~G~liV~~--~~-~~~~~-----~~~-------~~~e~~l~~~d~~~-- 166 (553)
++. ...|.++...-.... .|+ .-.+.+.. .. ....| .+. ..+.+.+.+..+..
T Consensus 286 v~~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 363 (523)
T PRK10965 286 VDT-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMM 363 (523)
T ss_pred EEc-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchh
Confidence 997 456777666531111 111 11222321 11 00000 000 01222332221100
Q ss_pred -------cCHHHHHHH--------HHhCC-------C---CCCCC---ceEEECCcCCCCCCCCCCCeEEEEEcCCEEEE
Q 008799 167 -------ADVEAVINQ--------ATQMG-------V---APNVS---DAHTINGHPGPVTNCTSQGFTLHVESGKTYLL 218 (553)
Q Consensus 167 -------~~~~~~~~~--------~~~~g-------~---~~~~~---~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rl 218 (553)
......... .+..| + ..... ..++|||+.++. ..+.++++.|++.+|
T Consensus 364 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~-----~~~~~~~~~G~~e~w 438 (523)
T PRK10965 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM-----NKPMFAAKKGQYERW 438 (523)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC-----CCcceecCCCCEEEE
Confidence 000000000 00000 0 00000 125899997631 126689999999999
Q ss_pred EEEecCCCceEEEEEcCceEEEEeeCCCccc---ceEeeEEEeCCCccEEEEEEeCC---CCCeeEEEEeecc
Q 008799 219 RIVNAAVNDELFFKIAGHNLTVVEVDSSYTK---PFKTDTIFIGPGQTTNALLTADK---KIGKYLITISPFM 285 (553)
Q Consensus 219 RliN~~~~~~~~~~i~gh~~~via~DG~~~~---p~~~d~~~l~pgeR~dv~v~~~~---~~g~~~i~~~~~~ 285 (553)
+|+|.+....+-|||||+.|+|++.||.... +.++|+|.|.+ ++++|+++++. .+|.|.+|||...
T Consensus 439 ~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~ 510 (523)
T PRK10965 439 VISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLE 510 (523)
T ss_pred EEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchh
Confidence 9999996555669999999999999998764 45789999977 88999999984 3479999999643
No 26
>PLN02835 oxidoreductase
Probab=99.37 E-value=2.4e-11 Score=130.57 Aligned_cols=238 Identities=14% Similarity=0.120 Sum_probs=145.2
Q ss_pred eeEEEECCCCCCCeEeecCCCEEEEEEEeCCC-CCceeeeCCCcccCCCCCCCCCC----ccCCCCCCCCceEEEEEeCC
Q 008799 42 KSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAY----ITQCPIQPGQSYVYNFTLTG 116 (553)
Q Consensus 42 ~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~pG~~~~y~~~~~~ 116 (553)
...+++||+.. |+++|++|+++|+|+.|... ....+|..|....-.. .||.+. +....|.||||++..+++++
T Consensus 191 ~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 46799999974 89999999999999999984 5677888877653221 788643 22345899999999999866
Q ss_pred CCcceEEecChhhhhcccee-eEEEcCCCCC--CCCCCC---CCc--------ceEEEEeeeeccCHH---HHHHHHH-h
Q 008799 117 QRGTLLWHAHISWLRATVHG-AIVILPKRSV--PYPFPK---ADK--------EKIIVFGEWWKADVE---AVINQAT-Q 178 (553)
Q Consensus 117 ~~Gt~wYH~H~~~~~~Gl~G-~liV~~~~~~--~~~~~~---~~~--------e~~l~~~d~~~~~~~---~~~~~~~-~ 178 (553)
.+|.||.+.-.......+.+ +++....... ..+.+. .+. .....+......... ....... .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 68999998632111111122 2222222110 001110 000 000001000000000 0000000 0
Q ss_pred -----CCCCCC--CCceEEECCcCCCC---------------CCCCC-------------CCeEEEEEcCCEEEEEEEec
Q 008799 179 -----MGVAPN--VSDAHTINGHPGPV---------------TNCTS-------------QGFTLHVESGKTYLLRIVNA 223 (553)
Q Consensus 179 -----~g~~~~--~~~~~~iNG~~~~~---------------~~~~~-------------~~~~~~v~~G~~~rlRliN~ 223 (553)
...... ....|.+||..+.. ..|.. ..-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000000 01357888887531 00100 01346778899999999998
Q ss_pred CCCceEEEEEcCceEEEEee-CCCc----------ccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEee
Q 008799 224 AVNDELFFKIAGHNLTVVEV-DSSY----------TKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISP 283 (553)
Q Consensus 224 ~~~~~~~~~i~gh~~~via~-DG~~----------~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~ 283 (553)
+...|. ||||||.|+|++. +|.+ ..|...|++.+.++..+-|-+++++ ||.|.+|||-
T Consensus 429 ~~~~HP-~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDN-PG~Wl~HCHi 497 (539)
T PLN02835 429 EKTMQS-WHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDN-QGMWNMRSAI 497 (539)
T ss_pred CCCCCC-CCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcC-CEEeeeeecc
Confidence 765555 9999999999987 5522 2488999999999999999999998 8999999995
No 27
>PRK10883 FtsI repressor; Provisional
Probab=99.34 E-value=4.7e-11 Score=126.69 Aligned_cols=219 Identities=14% Similarity=0.137 Sum_probs=133.5
Q ss_pred ceeeEEEECCCCCCCeEeecCCCEEEEEEEeCCC-CCceeee-CCC--cccCCCCCCCCCC-----ccCCCCCCCCceEE
Q 008799 40 ASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-YNVTIHW-HGV--RQLRTGWYDGPAY-----ITQCPIQPGQSYVY 110 (553)
Q Consensus 40 ~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~-~~~~iH~-HG~--~~~~~~~~DGv~~-----~tq~~i~pG~~~~y 110 (553)
....++++||+. .|.+.|+.| ++|+||.|... ....+++ +|. .+.. .||.+. +.+..|.||||++.
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa---~DGg~~~~P~~~~~l~l~pGeR~dv 281 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA---GDQGFLPAPVSVKQLSLAPGERREI 281 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE---eCCCcccCCcEeCeEEECCCCeEEE
Confidence 346779999996 699999875 89999999985 5677887 554 3332 686332 23456899999999
Q ss_pred EEEeCCCCcceEEecChhh-hhcccee------------eEEEcCCCCCCCCCCCCCcceEEEEeee--eccCHHHHHHH
Q 008799 111 NFTLTGQRGTLLWHAHISW-LRATVHG------------AIVILPKRSVPYPFPKADKEKIIVFGEW--WKADVEAVINQ 175 (553)
Q Consensus 111 ~~~~~~~~Gt~wYH~H~~~-~~~Gl~G------------~liV~~~~~~~~~~~~~~~e~~l~~~d~--~~~~~~~~~~~ 175 (553)
.++. .+.+.+.+++-... ....+.+ .+-++...... .. ....+..+... ......... .
T Consensus 282 lVd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~~~-~ 355 (471)
T PRK10883 282 LVDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIRSR-E 355 (471)
T ss_pred EEEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcceE-E
Confidence 9997 55567777663111 0011111 11111111000 00 00000000000 000000000 0
Q ss_pred HHhCCCCCCCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccc---eE
Q 008799 176 ATQMGVAPNVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKP---FK 252 (553)
Q Consensus 176 ~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p---~~ 252 (553)
..- ..+.++|||+.++. ..+.++++.|++++|+|.|.. .+-||||||.|+|++.||....| .+
T Consensus 356 -~~l-----~~~~~~INg~~~~~-----~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~gw 421 (471)
T PRK10883 356 -ISL-----GDDLPGINGALWDM-----NRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRGW 421 (471)
T ss_pred -EEe-----cCCcCccCCcccCC-----CcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccCc
Confidence 000 01234799997632 114578999999999998863 45699999999999999986543 46
Q ss_pred eeEEEeCCCccEEEEEEeCCCCC---eeEEEEeecc
Q 008799 253 TDTIFIGPGQTTNALLTADKKIG---KYLITISPFM 285 (553)
Q Consensus 253 ~d~~~l~pgeR~dv~v~~~~~~g---~~~i~~~~~~ 285 (553)
.|+|.+. ++++|+++++...| .|++|||-.+
T Consensus 422 kDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLe 455 (471)
T PRK10883 422 KDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLE 455 (471)
T ss_pred CcEEEcC--CeEEEEEEecCCCCCCCcEEeeccccc
Confidence 7999994 57999999997544 7999999654
No 28
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.32 E-value=2.4e-10 Score=123.86 Aligned_cols=239 Identities=15% Similarity=0.149 Sum_probs=141.1
Q ss_pred eEEEECCCC-C--------CCeEeecCCCEEEEEEEeCCC-CCceeeeCCCcccCCCCCCCCCC----ccCCCCCCCCce
Q 008799 43 SIVTVNGKF-P--------GPTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAY----ITQCPIQPGQSY 108 (553)
Q Consensus 43 ~~~~~NG~~-p--------GP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~pG~~~ 108 (553)
..+++||+. + .++|+|++|+++|+||.|... ....+|.+|....-.. .||++. +....|.||||+
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 568999984 1 148999999999999999974 4567777776543221 688643 223568999999
Q ss_pred EEEEEeCCCCcceEEecChhh--h---hccceeeEEEc-CCCCCCCCC----CCCCc-----c----e-EEEEeeeec--
Q 008799 109 VYNFTLTGQRGTLLWHAHISW--L---RATVHGAIVIL-PKRSVPYPF----PKADK-----E----K-IIVFGEWWK-- 166 (553)
Q Consensus 109 ~y~~~~~~~~Gt~wYH~H~~~--~---~~Gl~G~liV~-~~~~~~~~~----~~~~~-----e----~-~l~~~d~~~-- 166 (553)
+..+++++.+|.||.+.+... . ...-..+++.. +......+. +..+. + . .+....+..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 999998666899999987421 1 11111233332 221111010 00000 0 0 000000000
Q ss_pred -cCHHH----HHHHHHhCCC-----CC-CCCceEEECCcCCCC---------------------------CCC-------
Q 008799 167 -ADVEA----VINQATQMGV-----AP-NVSDAHTINGHPGPV---------------------------TNC------- 201 (553)
Q Consensus 167 -~~~~~----~~~~~~~~g~-----~~-~~~~~~~iNG~~~~~---------------------------~~~------- 201 (553)
..... .+........ .. .....|.+||+.+.. ..|
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00000 0000000000 00 001245788875310 001
Q ss_pred ---CC--CCeEEEEEcCCEEEEEEEecCC--CceEEEEEcCceEEEEeeC-CCc-----------ccceEeeEEEeCCCc
Q 008799 202 ---TS--QGFTLHVESGKTYLLRIVNAAV--NDELFFKIAGHNLTVVEVD-SSY-----------TKPFKTDTIFIGPGQ 262 (553)
Q Consensus 202 ---~~--~~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~~~l~pge 262 (553)
.. ....+.++.|+++++.|.|.+. ...+-||||||.|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 00 0135888999999999999853 2245599999999999886 321 137788999999999
Q ss_pred cEEEEEEeCCCCCeeEEEEee
Q 008799 263 TTNALLTADKKIGKYLITISP 283 (553)
Q Consensus 263 R~dv~v~~~~~~g~~~i~~~~ 283 (553)
-+-|-+++++ ||.|.+|||-
T Consensus 486 ~vvirf~adN-PG~W~~HCHi 505 (539)
T TIGR03389 486 WAAIRFVADN-PGVWFMHCHL 505 (539)
T ss_pred eEEEEEecCC-CeEEEEEecc
Confidence 9999999997 8999999994
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.22 E-value=2.8e-10 Score=121.11 Aligned_cols=233 Identities=18% Similarity=0.176 Sum_probs=145.4
Q ss_pred cceeeEEEECCCCCCCeEeecCCCEEEEEEEeCC-CCCceeeeCCCcccCCCCCCCCC----CccCCCCCCCCceEEEEE
Q 008799 39 CASKSIVTVNGKFPGPTLHAREDDNVIVRVTNHV-KYNVTIHWHGVRQLRTGWYDGPA----YITQCPIQPGQSYVYNFT 113 (553)
Q Consensus 39 g~~~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~----~~tq~~i~pG~~~~y~~~ 113 (553)
+.......+||+.. |.+.+. +..+++||.|.. .....+++.|....-.. .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~~-p~~~~~-~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAIL-PFKAVP-GGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCcc-ceeecC-CCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 46677888888542 555554 455999999998 67777777755543322 57755 355677999999999998
Q ss_pred eCCCCcceEEecChhhhhccceeeEEEcCCCCCCCCC-------CCCC---cceEEEEeeeeccCHHHHHHHHHhCCCCC
Q 008799 114 LTGQRGTLLWHAHISWLRATVHGAIVILPKRSVPYPF-------PKAD---KEKIIVFGEWWKADVEAVINQATQMGVAP 183 (553)
Q Consensus 114 ~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~-------~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~g~~~ 183 (553)
. ...|++-+.+......+.+.+..-.........+. ...+ ........................ ...
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHL--IGG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchh--hcc
Confidence 7 45789999987622112222222211111000000 0011 111111111111111000000000 011
Q ss_pred CCCceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcc--cceEeeEEEeCCC
Q 008799 184 NVSDAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYT--KPFKTDTIFIGPG 261 (553)
Q Consensus 184 ~~~~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~--~p~~~d~~~l~pg 261 (553)
.....|.+||+.++. ....+.++.|+++||++.|-+. ..+-||+||+.|+|++.|.... .+..+|++.+.|+
T Consensus 340 ~~~~~~~~n~~~~~~-----~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~~ 413 (451)
T COG2132 340 IGGYVWAINGKAFDD-----NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAPG 413 (451)
T ss_pred cccccccccCccCCC-----CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceEEEeCCC
Confidence 123568899987642 1267899999999999999998 4445999999999999992222 4678999999999
Q ss_pred ccEEEEEEeCCCCCeeEEEEeec
Q 008799 262 QTTNALLTADKKIGKYLITISPF 284 (553)
Q Consensus 262 eR~dv~v~~~~~~g~~~i~~~~~ 284 (553)
+|+.+.++++. +|.|++|||..
T Consensus 414 ~~~~v~~~a~~-~g~~~~HCH~l 435 (451)
T COG2132 414 ERLLVRFDADY-PGPWMFHCHIL 435 (451)
T ss_pred eEEEEEEeCCC-CCceEEeccch
Confidence 99999999997 68999999964
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.10 E-value=6e-09 Score=111.96 Aligned_cols=239 Identities=17% Similarity=0.166 Sum_probs=140.8
Q ss_pred eeEEEECCCCC-CCeEeecCCCEEEEEEEeCCC-CCceeeeCCCcccCCCCCCCCCC----ccCCCCCCCCceEEEEEeC
Q 008799 42 KSIVTVNGKFP-GPTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAY----ITQCPIQPGQSYVYNFTLT 115 (553)
Q Consensus 42 ~~~~~~NG~~p-GP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~pG~~~~y~~~~~ 115 (553)
...+++||+.+ .|+|+|++|+++|+|+.|... ....++..|....-.. .||.+- +.+..|.||||++..++++
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 36689999953 489999999999999999974 4566777666543221 688532 2345689999999999985
Q ss_pred CCC-c---ceEEecChhhhhccce-eeEEEcCCCCCC--CCCC---CC-Cc----ceEEEEe-eee---cc-CHHH---H
Q 008799 116 GQR-G---TLLWHAHISWLRATVH-GAIVILPKRSVP--YPFP---KA-DK----EKIIVFG-EWW---KA-DVEA---V 172 (553)
Q Consensus 116 ~~~-G---t~wYH~H~~~~~~Gl~-G~liV~~~~~~~--~~~~---~~-~~----e~~l~~~-d~~---~~-~~~~---~ 172 (553)
+++ | .||.+.-......-+. .+++..+..... .|.+ .. +. +..+.+. ... .. .... .
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 443 4 8998876421111111 233333322110 0111 00 00 1000000 000 00 0000 0
Q ss_pred ----HHHHH-hCCCC--CCCCceEEECCcCCCC----------CC-----CCC---C----------CeEEEEEcCCEEE
Q 008799 173 ----INQAT-QMGVA--PNVSDAHTINGHPGPV----------TN-----CTS---Q----------GFTLHVESGKTYL 217 (553)
Q Consensus 173 ----~~~~~-~~g~~--~~~~~~~~iNG~~~~~----------~~-----~~~---~----------~~~~~v~~G~~~r 217 (553)
..... ..... ......|.+||..+.. ++ ..+ . .-.+.++.|+++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 00000 00000 0001357888887531 00 000 0 1336788899999
Q ss_pred EEEEecCCCceEEEEEcCceEEEEee-----CC------CcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEee
Q 008799 218 LRIVNAAVNDELFFKIAGHNLTVVEV-----DS------SYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISP 283 (553)
Q Consensus 218 lRliN~~~~~~~~~~i~gh~~~via~-----DG------~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~ 283 (553)
+-|-|.....|. ||||||.|+|++. |+ ++..|...|++.+.++.=+-|-+++++ ||.|.+|||-
T Consensus 427 iViqn~~~~~HP-~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG~Wl~HCHi 501 (545)
T PLN02168 427 IVFQNPLFSLES-YHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDN-QGMWNVRSQK 501 (545)
T ss_pred EEEeCCCCCCCC-eeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccC-CeEEeeeecC
Confidence 888887654444 9999999999976 21 224688899999999999999999998 8999999993
No 31
>PLN02354 copper ion binding / oxidoreductase
Probab=99.08 E-value=4.4e-09 Score=113.47 Aligned_cols=237 Identities=16% Similarity=0.135 Sum_probs=142.4
Q ss_pred eEEEECCCCC------CCeEeecCCCEEEEEEEeCC-CCCceeeeCCCcccCCCCCCCCCC----ccCCCCCCCCceEEE
Q 008799 43 SIVTVNGKFP------GPTLHAREDDNVIVRVTNHV-KYNVTIHWHGVRQLRTGWYDGPAY----ITQCPIQPGQSYVYN 111 (553)
Q Consensus 43 ~~~~~NG~~p------GP~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~pG~~~~y~ 111 (553)
..+++||+.. -|+|.|++|+++|+||.|.. .....+|..|....-.. .||++- +....|.||||++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEEE
Confidence 5789999841 27999999999999999998 45567777776643221 788653 223558999999999
Q ss_pred EEeCCCCcceEEecChhhhh--ccceeeEEEcCCCCCC--CCCCCCCcceEEEE---eeeec-------cC---HHHH--
Q 008799 112 FTLTGQRGTLLWHAHISWLR--ATVHGAIVILPKRSVP--YPFPKADKEKIIVF---GEWWK-------AD---VEAV-- 172 (553)
Q Consensus 112 ~~~~~~~Gt~wYH~H~~~~~--~Gl~G~liV~~~~~~~--~~~~~~~~e~~l~~---~d~~~-------~~---~~~~-- 172 (553)
+++++.+|.||......... .... +++..+..... ...+.......... .+... .. ....
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~-ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~ 347 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTT-GIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYG 347 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEE-EEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccccc
Confidence 99866789999998743211 1122 33333222110 00110000000000 00000 00 0000
Q ss_pred -H--HHH--HhCCC-CCCCCceEEECCcCCCCC-------------------C---------CCC---CCeEEEEEcCCE
Q 008799 173 -I--NQA--TQMGV-APNVSDAHTINGHPGPVT-------------------N---------CTS---QGFTLHVESGKT 215 (553)
Q Consensus 173 -~--~~~--~~~g~-~~~~~~~~~iNG~~~~~~-------------------~---------~~~---~~~~~~v~~G~~ 215 (553)
. ... ..... .......+.+||..+... + |.. ..-.+.++.|++
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~ 427 (552)
T PLN02354 348 KINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTF 427 (552)
T ss_pred cccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCE
Confidence 0 000 00000 000013567888764210 0 000 013567788899
Q ss_pred EEEEEEecCCCceEEEEEcCceEEEEeeCCC-----------cccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEee
Q 008799 216 YLLRIVNAAVNDELFFKIAGHNLTVVEVDSS-----------YTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISP 283 (553)
Q Consensus 216 ~rlRliN~~~~~~~~~~i~gh~~~via~DG~-----------~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~ 283 (553)
+.+-|.|.....|. ||||||.|+|++.--+ +..|...|++.+.++.=.-|-+++++ ||-|.+|||-
T Consensus 428 VeiVi~n~~~~~HP-~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PGvW~~HCHi 504 (552)
T PLN02354 428 VEIIFENHEKSMQS-WHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDN-AGMWNIRSEN 504 (552)
T ss_pred EEEEEeCCCCCCCC-CcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecC-CeEEeeeccc
Confidence 99999998655555 9999999999976421 13588899999999999999999997 8999999995
No 32
>PLN02604 oxidoreductase
Probab=99.06 E-value=5.7e-09 Score=113.55 Aligned_cols=225 Identities=13% Similarity=0.074 Sum_probs=131.5
Q ss_pred CeEeecCCCEEEEEEEeCCC-CCceeeeCCCcccCCCCCCCCCC----ccCCCCCCCCceEEEEEeCCCCc-ceEEecCh
Q 008799 54 PTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAY----ITQCPIQPGQSYVYNFTLTGQRG-TLLWHAHI 127 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~pG~~~~y~~~~~~~~G-t~wYH~H~ 127 (553)
++|.+++|+++|+||.|... ....++..|....-.. .||.+. +....|.||||++..+++++.+| .||-....
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa-~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE-ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE-eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 48999999999999999974 4555666655432221 688543 22356899999999999855555 79998643
Q ss_pred hhh---h-ccceeeEEEcCCCC--CCCCCCCC----CcceEEEEeeee---------ccCHH---HHHHHHHhCCCCCCC
Q 008799 128 SWL---R-ATVHGAIVILPKRS--VPYPFPKA----DKEKIIVFGEWW---------KADVE---AVINQATQMGVAPNV 185 (553)
Q Consensus 128 ~~~---~-~Gl~G~liV~~~~~--~~~~~~~~----~~e~~l~~~d~~---------~~~~~---~~~~~~~~~g~~~~~ 185 (553)
... . .++ +++...... ...+.... -.+....+.... ..... ..+. ..........
T Consensus 303 ~~~~~~~~~~~--aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~ 379 (566)
T PLN02604 303 VSRNNTTPPGL--AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIV-LLNTQNEVNG 379 (566)
T ss_pred ccCCCCCccee--EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEE-EeccccccCC
Confidence 221 1 232 333332211 00000000 000000000000 00000 0000 0000000000
Q ss_pred CceEEECCcCCCCC---------------CCC------------------------CCCeEEEEEcCCEEEEEEEecCC-
Q 008799 186 SDAHTINGHPGPVT---------------NCT------------------------SQGFTLHVESGKTYLLRIVNAAV- 225 (553)
Q Consensus 186 ~~~~~iNG~~~~~~---------------~~~------------------------~~~~~~~v~~G~~~rlRliN~~~- 225 (553)
...|.+||..+... .|. ....++.++.|+++.+.|.|...
T Consensus 380 ~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~ 459 (566)
T PLN02604 380 YRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTM 459 (566)
T ss_pred eEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccc
Confidence 13577888754210 010 00134788999999999999853
Q ss_pred ----CceEEEEEcCceEEEEeeC-CCc-----------ccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEee
Q 008799 226 ----NDELFFKIAGHNLTVVEVD-SSY-----------TKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISP 283 (553)
Q Consensus 226 ----~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~ 283 (553)
...+-||+|||.|+|++.. |.+ ..|...|++.+.++.-+-|-+++++ ||.|.+|||-
T Consensus 460 ~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDN-PG~WlfHCHI 532 (566)
T PLN02604 460 NANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADN-PGVWAFHCHI 532 (566)
T ss_pred cCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCC-CeEeeEeecc
Confidence 2345699999999999987 432 1377789999999999999999998 8999999994
No 33
>PLN02991 oxidoreductase
Probab=99.04 E-value=1.7e-08 Score=108.36 Aligned_cols=239 Identities=13% Similarity=0.078 Sum_probs=140.3
Q ss_pred eeEEEECCCCCCCeEeecCCCEEEEEEEeCCC-CCceeeeCCCcccCCCCCCCCCC----ccCCCCCCCCceEEEEEeCC
Q 008799 42 KSIVTVNGKFPGPTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAY----ITQCPIQPGQSYVYNFTLTG 116 (553)
Q Consensus 42 ~~~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~pG~~~~y~~~~~~ 116 (553)
...+++||+...++++|++|+++|+|+.|... ....++..|....-.. .||.+- +.+..|.||||++...++++
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 46789999965589999999999999999974 4456666665533221 688642 23456899999999999977
Q ss_pred CCcceEEecChhhhhccceeeEEEcCCCC-CC--CCCCC--CCcceEEEEe---eee-----ccC-HHH-------HHHH
Q 008799 117 QRGTLLWHAHISWLRATVHGAIVILPKRS-VP--YPFPK--ADKEKIIVFG---EWW-----KAD-VEA-------VINQ 175 (553)
Q Consensus 117 ~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~-~~--~~~~~--~~~e~~l~~~---d~~-----~~~-~~~-------~~~~ 175 (553)
..|.||.-.-.......+.+.-|++-+.. .. .+.+. .+.+...-.. ++. ... ... .+..
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~ 348 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITR 348 (543)
T ss_pred CCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccce
Confidence 78999987543111111122222222111 00 01110 0000000000 000 000 000 0000
Q ss_pred HH-hCCCCC--CCCceEEECCcCCCC----------CCCC------------------CCCeEEEEEcCCEEEEEEEecC
Q 008799 176 AT-QMGVAP--NVSDAHTINGHPGPV----------TNCT------------------SQGFTLHVESGKTYLLRIVNAA 224 (553)
Q Consensus 176 ~~-~~g~~~--~~~~~~~iNG~~~~~----------~~~~------------------~~~~~~~v~~G~~~rlRliN~~ 224 (553)
.. ...... ...-.+.+||..+.. ++-+ ...-.+.++.|+.+.+=|-|..
T Consensus 349 ~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~ 428 (543)
T PLN02991 349 TIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWE 428 (543)
T ss_pred eEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCC
Confidence 00 000000 001256788876521 0000 0012356788888888888876
Q ss_pred CCceEEEEEcCceEEEEeeCCC-----------cccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEee
Q 008799 225 VNDELFFKIAGHNLTVVEVDSS-----------YTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISP 283 (553)
Q Consensus 225 ~~~~~~~~i~gh~~~via~DG~-----------~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~ 283 (553)
...| -||||||.|+|++...+ +..|...|++.+.++.=+-|-+++++ ||.|.+|||-
T Consensus 429 ~~~H-P~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG~W~~HCHi 496 (543)
T PLN02991 429 DIVQ-TWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDN-VGMWNLRSEL 496 (543)
T ss_pred CCCC-CeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCC-CEEeeeeeCc
Confidence 5544 49999999999986321 13588899999999999999999998 7999999995
No 34
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.03 E-value=9e-09 Score=111.59 Aligned_cols=227 Identities=15% Similarity=0.094 Sum_probs=131.2
Q ss_pred eEeecCCCEEEEEEEeCC-CCCceeeeCCCcccCCCCCCCCCC----ccCCCCCCCCceEEEEEeCCCC-cceEEecChh
Q 008799 55 TLHAREDDNVIVRVTNHV-KYNVTIHWHGVRQLRTGWYDGPAY----ITQCPIQPGQSYVYNFTLTGQR-GTLLWHAHIS 128 (553)
Q Consensus 55 ~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~pG~~~~y~~~~~~~~-Gt~wYH~H~~ 128 (553)
+|.|++|+++|+||.|.. .....++.+|....-.. .||.+. +....|.||||++..+++++.+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999987 45666666665533221 688543 2234589999999999984444 5899986543
Q ss_pred hhh--ccceeeEEEcCCCCC-CCC------CCCCCc-------ceEEEEeeeeccCHHHHHHH-H-HhCCCCCCCCceEE
Q 008799 129 WLR--ATVHGAIVILPKRSV-PYP------FPKADK-------EKIIVFGEWWKADVEAVINQ-A-TQMGVAPNVSDAHT 190 (553)
Q Consensus 129 ~~~--~Gl~G~liV~~~~~~-~~~------~~~~~~-------e~~l~~~d~~~~~~~~~~~~-~-~~~g~~~~~~~~~~ 190 (553)
... .....+++....... ..+ .+..+. +..++-.............. . ...+........|.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 331 111124444322111 000 000000 00000000000000000000 0 00000000012367
Q ss_pred ECCcCCCC-------------------------CC-------C----CC--CCeEEEEEcCCEEEEEEEecCC-----Cc
Q 008799 191 INGHPGPV-------------------------TN-------C----TS--QGFTLHVESGKTYLLRIVNAAV-----ND 227 (553)
Q Consensus 191 iNG~~~~~-------------------------~~-------~----~~--~~~~~~v~~G~~~rlRliN~~~-----~~ 227 (553)
+||..+.. +. | .. ..-++.++.|+++.+.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 88776420 00 0 00 0134788899999999999752 23
Q ss_pred eEEEEEcCceEEEEeeC-CCc-----------ccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEee
Q 008799 228 ELFFKIAGHNLTVVEVD-SSY-----------TKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISP 283 (553)
Q Consensus 228 ~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~ 283 (553)
.+-||||||.|+|++.. |.+ ..|...|++.+.++.-+-|-+++++ ||.|.+|||.
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adN-PG~W~~HCHi 509 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADN-PGVWAFHCHI 509 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCC-CeEeeeeccc
Confidence 45599999999999987 332 1377889999999999999999998 8999999994
No 35
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.02 E-value=1.1e-08 Score=110.59 Aligned_cols=237 Identities=16% Similarity=0.160 Sum_probs=136.5
Q ss_pred eEEEECCCC---------------CCCeEeecCCCEEEEEEEeCCC-CCceeeeCCCc---ccCCCCCCCCCC----ccC
Q 008799 43 SIVTVNGKF---------------PGPTLHAREDDNVIVRVTNHVK-YNVTIHWHGVR---QLRTGWYDGPAY----ITQ 99 (553)
Q Consensus 43 ~~~~~NG~~---------------pGP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~---~~~~~~~DGv~~----~tq 99 (553)
..+++||+. ..|+|+|++|+++++|+.|... ....+++.|.. +.. .||.+- +..
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa---~DG~~~~P~~v~~ 248 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE---ADGSYTKPAKIDH 248 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE---eCCCCCCceEeCe
Confidence 468899983 1278999999999999999985 44566666644 333 688632 123
Q ss_pred CCCCCCCceEEEEEeCCC-------CcceEEecChhhhhcccee-eEEEcC-CCCCCCC-CCC-----C------CcceE
Q 008799 100 CPIQPGQSYVYNFTLTGQ-------RGTLLWHAHISWLRATVHG-AIVILP-KRSVPYP-FPK-----A------DKEKI 158 (553)
Q Consensus 100 ~~i~pG~~~~y~~~~~~~-------~Gt~wYH~H~~~~~~Gl~G-~liV~~-~~~~~~~-~~~-----~------~~e~~ 158 (553)
..|.||||++..+++++. +|-||...-.......+.+ +++... ......+ .+. . ..+..
T Consensus 249 l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 328 (538)
T TIGR03390 249 LQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYE 328 (538)
T ss_pred EEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhhee
Confidence 458999999999998433 4889987642211111222 233332 1111111 000 0 01111
Q ss_pred EE-Eeeee---ccCHHHHHHH-HHhCCCC--C-CCCceEEECCcCCCC--C----------C---C------------CC
Q 008799 159 IV-FGEWW---KADVEAVINQ-ATQMGVA--P-NVSDAHTINGHPGPV--T----------N---C------------TS 203 (553)
Q Consensus 159 l~-~~d~~---~~~~~~~~~~-~~~~g~~--~-~~~~~~~iNG~~~~~--~----------~---~------------~~ 203 (553)
+. +..-. .......... ....+.. . .....|++||..+.. . + . ..
T Consensus 329 l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~ 408 (538)
T TIGR03390 329 LEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFD 408 (538)
T ss_pred eEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcC
Confidence 11 00000 0000000000 0000000 0 011457888886531 0 0 0 00
Q ss_pred -CCeEEEEEcCCEEEEEEEecC-------CCceEEEEEcCceEEEEee-CCCc-----------ccceEeeEEEeC----
Q 008799 204 -QGFTLHVESGKTYLLRIVNAA-------VNDELFFKIAGHNLTVVEV-DSSY-----------TKPFKTDTIFIG---- 259 (553)
Q Consensus 204 -~~~~~~v~~G~~~rlRliN~~-------~~~~~~~~i~gh~~~via~-DG~~-----------~~p~~~d~~~l~---- 259 (553)
..-.+.++.|+++++.|.|.. ....+-||||||.|+|++. +|.+ ..|...|++.+.
T Consensus 409 ~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~ 488 (538)
T TIGR03390 409 PETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAV 488 (538)
T ss_pred cCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccc
Confidence 002577888999999999974 2345569999999999985 4432 248889999984
Q ss_pred ------CCccEEEEEEeCCCCCeeEEEEee
Q 008799 260 ------PGQTTNALLTADKKIGKYLITISP 283 (553)
Q Consensus 260 ------pgeR~dv~v~~~~~~g~~~i~~~~ 283 (553)
++.-+-|.+++++ ||.|.+|||-
T Consensus 489 ~~~~~~~~~~~~ir~~~dN-PG~W~~HCHi 517 (538)
T TIGR03390 489 KVVPGAPAGWRAWRIRVTN-PGVWMMHCHI 517 (538)
T ss_pred cccccCCCceEEEEEEcCC-CeeEEEeccc
Confidence 6777888899987 7999999994
No 36
>PLN02792 oxidoreductase
Probab=99.00 E-value=4e-08 Score=105.62 Aligned_cols=240 Identities=14% Similarity=0.083 Sum_probs=141.8
Q ss_pred eeeEEEECCCC--CCCeEeecCCCEEEEEEEeCCC-CCceeeeCCCcccCCCCCCCCCC----ccCCCCCCCCceEEEEE
Q 008799 41 SKSIVTVNGKF--PGPTLHAREDDNVIVRVTNHVK-YNVTIHWHGVRQLRTGWYDGPAY----ITQCPIQPGQSYVYNFT 113 (553)
Q Consensus 41 ~~~~~~~NG~~--pGP~i~v~~Gd~v~v~l~N~l~-~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~pG~~~~y~~~ 113 (553)
....+++||+- ..++|.|++|+++++||.|... ....++..|....-.. .||.+- +....|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 34778999994 2478999999999999999974 4567777776543321 688542 23356899999999999
Q ss_pred eCCCCcceEEecChhhhhcccee-eEEEcCCCCCCC---C-CCC-CCcceEEEEe---eeecc------CHHH---H--H
Q 008799 114 LTGQRGTLLWHAHISWLRATVHG-AIVILPKRSVPY---P-FPK-ADKEKIIVFG---EWWKA------DVEA---V--I 173 (553)
Q Consensus 114 ~~~~~Gt~wYH~H~~~~~~Gl~G-~liV~~~~~~~~---~-~~~-~~~e~~l~~~---d~~~~------~~~~---~--~ 173 (553)
+++.+|.||...........+.+ +++-........ + .+. .+.....-.. ++... .... . +
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 86668999988653211111122 333332211100 0 000 0000000000 00000 0000 0 0
Q ss_pred H--HHH-hCCCCCC--CCceEEECCcCCCC----------CC---C-C----C-----------CCeEEEEEcCCEEEEE
Q 008799 174 N--QAT-QMGVAPN--VSDAHTINGHPGPV----------TN---C-T----S-----------QGFTLHVESGKTYLLR 219 (553)
Q Consensus 174 ~--~~~-~~g~~~~--~~~~~~iNG~~~~~----------~~---~-~----~-----------~~~~~~v~~G~~~rlR 219 (553)
. ... ....... ..-.+.+||..+.. ++ . + . ..-++.++.|+++.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 000 0000000 01246788876531 00 0 0 0 0134678889999999
Q ss_pred EEecCCCceEEEEEcCceEEEEeeC-C----------CcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEee
Q 008799 220 IVNAAVNDELFFKIAGHNLTVVEVD-S----------SYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISP 283 (553)
Q Consensus 220 liN~~~~~~~~~~i~gh~~~via~D-G----------~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~ 283 (553)
|-|.....+ -||||||.|+|++.. | ++..|...|++.+.++.=+-|-+++++ ||-|.+|||-
T Consensus 417 iqn~~~~~H-P~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDN-PGvW~~HCh~ 489 (536)
T PLN02792 417 FQNREKIVQ-SYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDN-VGMWNLRSQF 489 (536)
T ss_pred EECCCCCCC-CeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeC-CEEEeeeEcc
Confidence 998765444 499999999999752 1 123588899999999999999999998 7999999983
No 37
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.89 E-value=1.3e-08 Score=90.15 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=70.0
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcc-----------cceEeeEEEeCCCccEEEEEEeCCCC
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYT-----------KPFKTDTIFIGPGQTTNALLTADKKI 274 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-----------~p~~~d~~~l~pgeR~dv~v~~~~~~ 274 (553)
..++++.|++++|+|.|.+.. .+.||+||+.|+|++.++... .|...|++.|.+|+++.|.+++++ |
T Consensus 34 ~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~-~ 111 (138)
T PF07731_consen 34 PVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN-P 111 (138)
T ss_dssp SEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS-T
T ss_pred ceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec-c
Confidence 789999999999999998876 555999999999999999873 578899999999999999999995 8
Q ss_pred CeeEEEEeec
Q 008799 275 GKYLITISPF 284 (553)
Q Consensus 275 g~~~i~~~~~ 284 (553)
|.|.++||..
T Consensus 112 G~w~~HCHi~ 121 (138)
T PF07731_consen 112 GPWLFHCHIL 121 (138)
T ss_dssp EEEEEEESSH
T ss_pred eEEEEEEchH
Confidence 9999999954
No 38
>PLN02191 L-ascorbate oxidase
Probab=98.83 E-value=1.7e-07 Score=101.90 Aligned_cols=226 Identities=14% Similarity=0.112 Sum_probs=128.3
Q ss_pred CeEeecCCCEEEEEEEeCC-CCCceeeeCCCcccCCCCCCCCCC----ccCCCCCCCCceEEEEEeCCCC-cceEEecCh
Q 008799 54 PTLHAREDDNVIVRVTNHV-KYNVTIHWHGVRQLRTGWYDGPAY----ITQCPIQPGQSYVYNFTLTGQR-GTLLWHAHI 127 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~----~tq~~i~pG~~~~y~~~~~~~~-Gt~wYH~H~ 127 (553)
+++.|++|+++++|+.|.. .....++..|....-.. .||.+. +....|.||||++..+++++.+ +.||-+.-.
T Consensus 226 ~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~ 304 (574)
T PLN02191 226 QTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGV 304 (574)
T ss_pred eEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEc
Confidence 3799999999999999997 44555666655433221 788654 2235589999999999985555 589988643
Q ss_pred hhhh----ccceeeEEEcCCCCC-CCCC------CCCCc-----ceEE-EEeeee-ccCHHHHHHH-H-HhCCCCCCCCc
Q 008799 128 SWLR----ATVHGAIVILPKRSV-PYPF------PKADK-----EKII-VFGEWW-KADVEAVINQ-A-TQMGVAPNVSD 187 (553)
Q Consensus 128 ~~~~----~Gl~G~liV~~~~~~-~~~~------~~~~~-----e~~l-~~~d~~-~~~~~~~~~~-~-~~~g~~~~~~~ 187 (553)
.... .++ +++-...... ..+. +..+. .... .+.... .......... . ...........
T Consensus 305 ~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 382 (574)
T PLN02191 305 RGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQNLIDGYT 382 (574)
T ss_pred cccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccceeCCeE
Confidence 3211 232 3333322111 0000 00000 0000 000000 0000000000 0 00000000012
Q ss_pred eEEECCcCCCCC------------------------------C-----CC---CCCeEEEEEcCCEEEEEEEecC-----
Q 008799 188 AHTINGHPGPVT------------------------------N-----CT---SQGFTLHVESGKTYLLRIVNAA----- 224 (553)
Q Consensus 188 ~~~iNG~~~~~~------------------------------~-----~~---~~~~~~~v~~G~~~rlRliN~~----- 224 (553)
.+.+||..+... . |. ...-.+.++.|+++.+=|.|..
T Consensus 383 ~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~ 462 (574)
T PLN02191 383 KWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGV 462 (574)
T ss_pred EEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCC
Confidence 467777654100 0 00 0012456777999999999875
Q ss_pred CCceEEEEEcCceEEEEeeCCC------------cccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEee
Q 008799 225 VNDELFFKIAGHNLTVVEVDSS------------YTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISP 283 (553)
Q Consensus 225 ~~~~~~~~i~gh~~~via~DG~------------~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~ 283 (553)
....+-||+|||.|+|++...+ +..|...|++.+.++.=+-|-+++++ ||-|.+|||-
T Consensus 463 ~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDN-PG~Wl~HCHi 532 (574)
T PLN02191 463 VSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDN-PGVWFFHCHI 532 (574)
T ss_pred CCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCC-CEEEEEecCc
Confidence 2345559999999999976532 12477899999999999999999997 8999999994
No 39
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.79 E-value=4.2e-08 Score=83.92 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=68.3
Q ss_pred eeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEe
Q 008799 428 TRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRA 507 (553)
Q Consensus 428 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 507 (553)
.+++.++.|+.|++.+.|.. ...+.+|+||...---....|. ... -.-.|.|++....+|++
T Consensus 25 GPtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~~~~~DG~--------~~~-------~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 25 GPTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPPSPWMDGV--------PGV-------TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTTGGGGSGG--------TTT-------SGSSBSTTEEEEEEEEE
T ss_pred CCEEEEEcCCeeEEEEEecc---ccccccccceeeeeeeeecCCc--------ccc-------cceeEEeecceeeeEee
Confidence 35789999999999999964 5679999999654100000010 000 01258899999999999
Q ss_pred cC-ceeeEEeecchhhHhccceEEEEEeCC
Q 008799 508 DN-PGVWFLHCHLEVHTSWGLKMAFVVDNG 536 (553)
Q Consensus 508 dn-pG~w~~HCHil~H~d~GM~~~~~V~~~ 536 (553)
+. +|.|.||||...|...||...+.|++.
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 88 999999999999988999999999864
No 40
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.65 E-value=5.3e-06 Score=89.99 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=66.5
Q ss_pred ceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEE-eeCCCcccceEeeEEEeCCCccEE
Q 008799 187 DAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVV-EVDSSYTKPFKTDTIFIGPGQTTN 265 (553)
Q Consensus 187 ~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~~~l~pgeR~d 265 (553)
..++|||+.- . |+|+++.|+++++++.|... ....+|.||..+.-- ..||. |. ..-.|.||+++.
T Consensus 49 ~vi~vNGq~P-G-------PtI~~~~GD~v~V~V~N~L~-~~ttIHWHGl~q~~t~w~DGv---~~--TQcPI~PG~sft 114 (596)
T PLN00044 49 EAIGINGQFP-G-------PALNVTTNWNLVVNVRNALD-EPLLLTWHGVQQRKSAWQDGV---GG--TNCAIPAGWNWT 114 (596)
T ss_pred EEEEEcCcCC-C-------CcEEEECCCEEEEEEEeCCC-CCccEEECCccCCCCccccCC---CC--CcCCcCCCCcEE
Confidence 4799999942 2 89999999999999999975 455699999765433 47986 33 346899999999
Q ss_pred EEEEeCCCCCeeEEEEee
Q 008799 266 ALLTADKKIGKYLITISP 283 (553)
Q Consensus 266 v~v~~~~~~g~~~i~~~~ 283 (553)
..+++++.+|+||.|+|.
T Consensus 115 Y~F~~~dq~GT~WYHsH~ 132 (596)
T PLN00044 115 YQFQVKDQVGSFFYAPST 132 (596)
T ss_pred EEEEeCCCCceeEeeccc
Confidence 999996447999999984
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.56 E-value=1.5e-07 Score=79.02 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=46.3
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhhcc
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT 133 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~G 133 (553)
..|++++|++|+|+++|.....+.+...++... ..|.||++.++.|.. ..+|+|=|+|-.++ .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~--~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP--N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS---T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC--c-
Confidence 599999999999999999888777766663322 358999999999986 89999999998766 2
Q ss_pred ceeeEEE
Q 008799 134 VHGAIVI 140 (553)
Q Consensus 134 l~G~liV 140 (553)
|.|-|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 6777765
No 42
>PRK02710 plastocyanin; Provisional
Probab=98.47 E-value=3.2e-06 Score=72.62 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=53.7
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhhcc
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT 133 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~G 133 (553)
+.|++++||+| +++|....++++.+.|..-. . .+...+.||++++|.|. .+|+|-|+|-.| ..+|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~~----~-----~~~~~~~pg~t~~~tF~---~~G~y~y~C~~H-~~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAKEL----S-----HKDLAFAPGESWEETFS---EAGTYTYYCEPH-RGAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCccc----c-----ccccccCCCCEEEEEec---CCEEEEEEcCCC-ccCC
Confidence 79999999985 56788777888877643110 0 11124789999999996 389999999732 2279
Q ss_pred ceeeEEEc
Q 008799 134 VHGAIVIL 141 (553)
Q Consensus 134 l~G~liV~ 141 (553)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 43
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.18 E-value=8.6e-06 Score=67.53 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=54.8
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCc--cCCCCCCCCceEEEEEeCCCCcceEEecChhhhh
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYI--TQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLR 131 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~--tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~ 131 (553)
..|++++||+| +++|....++++.++........ .+..+.. +...+.||+++++.|. .+|+|.|+|. ....
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~---~~G~y~y~C~-~H~~ 89 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFS---TPGTYTFYCE-PHRG 89 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeC---CCEEEEEEcC-Cccc
Confidence 68999999986 56688777787777643221110 0111111 2235789999999886 3899999998 2233
Q ss_pred ccceeeEEEc
Q 008799 132 ATVHGAIVIL 141 (553)
Q Consensus 132 ~Gl~G~liV~ 141 (553)
+||.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 7999999985
No 44
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.14 E-value=0.00034 Score=75.38 Aligned_cols=236 Identities=17% Similarity=0.177 Sum_probs=139.2
Q ss_pred ceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceE-EEEeeCCCcccceEeeEEEeCCCccEE
Q 008799 187 DAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNL-TVVEVDSSYTKPFKTDTIFIGPGQTTN 265 (553)
Q Consensus 187 ~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~-~via~DG~~~~p~~~d~~~l~pgeR~d 265 (553)
..++|||+.- . |.|.++.|+++.++++|-.. ..+.+|.||-.. +--..||.++ ..=.|.|||.+.
T Consensus 48 ~vi~iNG~fP-G-------P~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~t 113 (563)
T KOG1263|consen 48 QVITINGQFP-G-------PTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENFT 113 (563)
T ss_pred eeEeecCCCC-C-------CeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCCCCeEE
Confidence 5789999942 2 99999999999999999964 677788888543 3334588443 233688999999
Q ss_pred EEEEeCCCCCeeEEEEeeccccccccCCccEEEEEEEcCCCCCCCCccCCCCCCCCcccccccccccccccCCCCCCCCC
Q 008799 266 ALLTADKKIGKYLITISPFMDTIVAVNNVTGIAFLRYKGTVAFSSTTLTNVPAINATEVTNTFSDNLRSLNSKRYPAKVP 345 (553)
Q Consensus 266 v~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p 345 (553)
-.++.++..|+||.++|...... +. .-.+++.+. ... +| +|-.
T Consensus 114 Y~F~v~~q~GT~~yh~h~~~~Ra---~G-~~G~liI~~-~~~--------~p----------------------~pf~-- 156 (563)
T KOG1263|consen 114 YRFTVKDQIGTLWYHSHVSWQRA---TG-VFGALIINP-RPG--------LP----------------------VPFP-- 156 (563)
T ss_pred EEEEeCCcceeEEEeeccccccc---cC-ceeEEEEcC-Ccc--------CC----------------------CCCC--
Confidence 99999965799999998532211 11 112333222 110 00 0000
Q ss_pred CCcceEEEEEeeeeccCCccCCCCceeeEeeeceeeecCCchhhhhhhccccccccCCCCCCCCeeeccCCCCCCccccC
Q 008799 346 LTVDHSLLLTMAVAVNPCATCPNGTKVGAAMNNISFVMPTTALLQAHYYKISGVFTDDFPAKPPIAFNYTGNYTGTLQTT 425 (553)
Q Consensus 346 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 425 (553)
..++++.+-++ .|--+ -...-+...... .+ ..|.. +.-...+| ..+...
T Consensus 157 -~pd~E~~ill~---------------dW~~~------~~~~~l~~~~~~-~~----~~p~~-~D~~~iNg---~~g~~~ 205 (563)
T KOG1263|consen 157 -KPDKEFTILLG---------------DWYKN------LNHKNLKNFLDR-TG----ALPNP-SDGVLING---RSGFLY 205 (563)
T ss_pred -CCCceeEEEeE---------------eeccc------cCHHHHHHhhcc-CC----CCCCC-CCceEECC---CCCccc
Confidence 12333332211 12211 000001100000 00 01110 11111111 112335
Q ss_pred CCeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEE
Q 008799 426 NGTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRF 505 (553)
Q Consensus 426 ~~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf 505 (553)
+|...+.+..|++..|.|.|.++. ...+ |.+-||.+.|++.. | ....|.--|++.|-+|....+-.
T Consensus 206 ~~~~~l~v~pGktY~lRiiN~g~~-~~l~-F~I~~H~ltvVe~D-g-----------~y~~p~~~~~l~i~~GQ~~~vLv 271 (563)
T KOG1263|consen 206 NCTPTLTVEPGKTYRLRIINAGLN-TSLN-FSIANHQLTVVEVD-G-----------AYTKPFTTDSLDIHPGQTYSVLL 271 (563)
T ss_pred CceeEEEEcCCCEEEEEEEccccc-cceE-EEECCeEEEEEEec-c-----------eEEeeeeeceEEEcCCcEEEEEE
Confidence 567889999999999999998743 3445 99999999999985 2 12345567889999999999999
Q ss_pred EecC-ce-eeEEeec
Q 008799 506 RADN-PG-VWFLHCH 518 (553)
Q Consensus 506 ~adn-pG-~w~~HCH 518 (553)
++|. ++ .|+.=|=
T Consensus 272 tadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 272 TADQSPGDYYIAASP 286 (563)
T ss_pred eCCCCCCcEEEEEEe
Confidence 9975 55 5665554
No 45
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.09 E-value=2e-05 Score=70.17 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=58.2
Q ss_pred eEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecC---C--cEEEE
Q 008799 429 RLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPT---A--GWTAI 503 (553)
Q Consensus 429 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~---~--g~~~i 503 (553)
+.+.++.|+.|++.+.|.. .+..|.|-||.+.-..- ..+..+.. |..-..-.+|+ + ++..+
T Consensus 52 P~I~v~~Gd~V~v~v~N~~--~~~~H~~~I~~~g~~~~------~~p~mdG~------~~~~~~~i~p~~~~g~~~~~~~ 117 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTD--TDSGHNFDISKRGPPYP------YMPGMDGL------GFVAGTGFLPPPKSGKFGYTDF 117 (148)
T ss_pred CEEEEcCCCEEEEEEEeCC--CCccccEEeecCCCccc------cccccCCC------CccccCcccCCCCCCccceeEE
Confidence 4578999999999999964 23467666663221000 00000000 11111112232 2 24678
Q ss_pred EEEecCceeeEEeecchhhHhccceEEEEEe
Q 008799 504 RFRADNPGVWFLHCHLEVHTSWGLKMAFVVD 534 (553)
Q Consensus 504 rf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 534 (553)
.|+++.+|.|.||||+..|...||...+.|+
T Consensus 118 tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 118 TYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 8888899999999999999999999999874
No 46
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.01 E-value=3.4e-05 Score=61.66 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=52.7
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhhcc
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT 133 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~G 133 (553)
+.|++++||+| +++|....++++++....-....+.. ..+.||+++++.| .++|+|-|||-.|. .
T Consensus 11 ~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTF---TEAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEE--EEEECCCCCccEEecCCCCccccccc-------cccCCCCEEEEEC---CCCEEEEEEcCCCC---C
Confidence 78999999996 56898878888887643211111111 2357888888777 46999999998765 5
Q ss_pred ceeeEEEc
Q 008799 134 VHGAIVIL 141 (553)
Q Consensus 134 l~G~liV~ 141 (553)
|.|-++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 99999885
No 47
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.91 E-value=5e-05 Score=68.93 Aligned_cols=94 Identities=14% Similarity=0.215 Sum_probs=76.7
Q ss_pred eeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEe
Q 008799 428 TRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRA 507 (553)
Q Consensus 428 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 507 (553)
...+.++.|+++.|.|.|.+ ....+.|++.||+|+|++.... +..|...|++.|.+|+.+-|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~--~~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAG--ASTSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEES--SS-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEecc--CCeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEEe
Confidence 45789999999999999976 3457999999999999998521 233778899999999999999999
Q ss_pred cC-ceeeEEee----cchhhHhccceEEEEEeC
Q 008799 508 DN-PGVWFLHC----HLEVHTSWGLKMAFVVDN 535 (553)
Q Consensus 508 dn-pG~w~~HC----Hil~H~d~GM~~~~~V~~ 535 (553)
+. +|.|.++| +...+...|+...+.+-.
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 87 99999999 667788888887776543
No 48
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.84 E-value=4e-05 Score=63.56 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=53.0
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCC-CCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhhc
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYD-GPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRA 132 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~D-Gv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 132 (553)
+.|++++||+| ++.|....++++.+=--........+ ..+.-....+.||+++++.|+ .+|+|.|+|-. ...+
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 79999999985 56676666666665321100000000 000001134789999999997 68999999983 3447
Q ss_pred cceeeEEEc
Q 008799 133 TVHGAIVIL 141 (553)
Q Consensus 133 Gl~G~liV~ 141 (553)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999995
No 49
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.83 E-value=0.00034 Score=62.41 Aligned_cols=100 Identities=17% Similarity=0.055 Sum_probs=72.8
Q ss_pred eEEEECCCCCC-CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCC-------CCCCCCC----Ccc-----CCCCCCC
Q 008799 43 SIVTVNGKFPG-PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRT-------GWYDGPA----YIT-----QCPIQPG 105 (553)
Q Consensus 43 ~~~~~NG~~pG-P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~-------~~~DGv~----~~t-----q~~i~pG 105 (553)
+.+-|||+..| ++|-+-+|-+|.|+++|....++++-. .. .++ ...||.. |.+ -..|.+|
T Consensus 73 ~~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i--v~-n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~G 149 (195)
T TIGR03094 73 YPFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL--LP-NSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSG 149 (195)
T ss_pred ccccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE--ec-CCCCCCCccccccCceeEeecccccCcccccccccc
Confidence 33678999999 899999999999999999877766544 11 111 1246632 222 1346688
Q ss_pred CceEEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCC
Q 008799 106 QSYVYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSV 146 (553)
Q Consensus 106 ~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~ 146 (553)
++..-.|.. -++|+|||-|-..+.. +||+|-+||...-..
T Consensus 150 qs~sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~vt~ 190 (195)
T TIGR03094 150 HSRSGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNVTT 190 (195)
T ss_pred ceeEEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCccc
Confidence 886656654 7999999999987765 999999999876543
No 50
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.82 E-value=7.4e-05 Score=80.09 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=71.0
Q ss_pred EEeecccceeeE--EEECCCCCCCeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEE
Q 008799 33 TNMTKLCASKSI--VTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVY 110 (553)
Q Consensus 33 ~~~~~~g~~~~~--~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y 110 (553)
..+.++|...++ ....-+|--+.|+|++||+|+++|+|.....=.+ ||..+... |+ . .-+.||++.+.
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI---~-~dv~PG~t~sv 601 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV---N-MEVAPQATASV 601 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc---c-EEEcCCceEEE
Confidence 446677755444 4555566446899999999999999964322222 66665432 11 1 34779999999
Q ss_pred EEEeCCCCcceEEecCh--hhhhccceeeEEEcCC
Q 008799 111 NFTLTGQRGTLLWHAHI--SWLRATVHGAIVILPK 143 (553)
Q Consensus 111 ~~~~~~~~Gt~wYH~H~--~~~~~Gl~G~liV~~~ 143 (553)
.|++ +.+|+|||||.. +....+|.|.++|+++
T Consensus 602 tF~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 602 TFTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 9997 899999999985 2233799999999874
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.67 E-value=0.0003 Score=64.21 Aligned_cols=103 Identities=18% Similarity=0.096 Sum_probs=74.0
Q ss_pred eEEEECCCCCC-CeEeecCCCEEEEEEEeCCCCCceee--eCCCccc--CCCCCCCCC----C-----ccCCCCCCCCce
Q 008799 43 SIVTVNGKFPG-PTLHAREDDNVIVRVTNHVKYNVTIH--WHGVRQL--RTGWYDGPA----Y-----ITQCPIQPGQSY 108 (553)
Q Consensus 43 ~~~~~NG~~pG-P~i~v~~Gd~v~v~l~N~l~~~~~iH--~HG~~~~--~~~~~DGv~----~-----~tq~~i~pG~~~ 108 (553)
..+-|||..-| ++|.+-+|-+|.|+++|....++++- --+-.++ ..-..||.. | .....|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47789999888 89999999999999999875544432 2222111 112246621 1 112468899999
Q ss_pred EEEEEeCCCCcceEEecChhhhh-ccceeeEEEcCCCCC
Q 008799 109 VYNFTLTGQRGTLLWHAHISWLR-ATVHGAIVILPKRSV 146 (553)
Q Consensus 109 ~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~ 146 (553)
.-.|.. -++|.|||-|-..+.. +||++-|+|.+.-..
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCccc
Confidence 877764 6899999999988877 999999999876543
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.47 E-value=0.00051 Score=56.89 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=56.1
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
.+.++.|++|+|+ |.+ ...|.+.++...+..-. .........+++.+.||....+.|..
T Consensus 18 ~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~pG~t~~~tF~~-- 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGV--------------KELAKSLSHKDLLNSPGESYEVTFST-- 76 (99)
T ss_pred EEEECCCCEEEEE--ECC---CCCceEEECCCCCccch--------------hhhcccccccccccCCCCEEEEEeCC--
Confidence 4788999999987 432 35677776533211000 00001123467788999998887765
Q ss_pred ceeeEEeecchhhHhccceEEEEEe
Q 008799 510 PGVWFLHCHLEVHTSWGLKMAFVVD 534 (553)
Q Consensus 510 pG~w~~HCHil~H~d~GM~~~~~V~ 534 (553)
||.|.|||- .|...||...+.|+
T Consensus 77 ~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999874
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.38 E-value=0.0011 Score=56.25 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=48.2
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeee-CCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhhc
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHW-HGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRA 132 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~-HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 132 (553)
..|++++||+|+....|. ++++.+ .+.. -+|... ..-.+|+++++.| +.+|+|-|+|-.| ..+
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH-~~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPH-YGM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCC-ccC
Confidence 689999999976666554 455444 2211 122211 1123566666666 4789999999732 337
Q ss_pred cceeeEEEcCCC
Q 008799 133 TVHGAIVILPKR 144 (553)
Q Consensus 133 Gl~G~liV~~~~ 144 (553)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999998854
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.37 E-value=0.001 Score=56.96 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=54.7
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhhcc
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRAT 133 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~G 133 (553)
-.|++++||+ |++.|.....++++.-+.. .+|.++. ....+|+++++.|. .+|+|-|+|-.|. .+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~~g~~~-----~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~-~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DPEGSGT-----LKAGINESFTHTFE---TPGEYTYYCTPHP-GMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Ccccccc-----cccCCCcceEEEec---ccceEEEEeccCC-CCC
Confidence 4899999999 7888998888888876655 1112221 23455688888885 4999999995442 269
Q ss_pred ceeeEEEcC
Q 008799 134 VHGAIVILP 142 (553)
Q Consensus 134 l~G~liV~~ 142 (553)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.35 E-value=0.00093 Score=57.69 Aligned_cols=59 Identities=15% Similarity=0.391 Sum_probs=47.8
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
.+.++.|+.|+|.+.|.+ +..|.+-++++.+ ...+++++...++|.++.
T Consensus 62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 468999999999999864 4567777765421 347889999999999999
Q ss_pred ceeeEEeecc
Q 008799 510 PGVWFLHCHL 519 (553)
Q Consensus 510 pG~w~~HCHi 519 (553)
||.|-|||-.
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999964
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.04 E-value=0.0042 Score=52.59 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=49.7
Q ss_pred CeEeecCCCEEEEEEEeCC-CCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhhc
Q 008799 54 PTLHAREDDNVIVRVTNHV-KYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRA 132 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l-~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 132 (553)
..|++++||+|+ ++|+. ..++++..-+ ... .| .......||++++|.|. .+|+|-|+|-.| ..+
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~-f~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH-~~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGD-LD----ESERVSEEGTTYEHTFE---EPGIYLYVCVPH-EAL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCC-cc----ccccccCCCCEEEEEec---CCcEEEEEccCC-CCC
Confidence 689999999955 77544 4666665421 011 11 01123578999999994 689999999754 236
Q ss_pred cceeeEEEc
Q 008799 133 TVHGAIVIL 141 (553)
Q Consensus 133 Gl~G~liV~ 141 (553)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 999999985
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.77 E-value=0.0075 Score=49.89 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=53.1
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
.+.++.|++|.|+..+ ...|.+.+ ...+ .......... +..-.+..+.+|....+.|. .
T Consensus 18 ~i~V~~G~tV~~~n~~-----~~~Hnv~~-------~~~~---~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~--~ 76 (99)
T PF00127_consen 18 EITVKAGDTVTFVNND-----SMPHNVVF-------VADG---MPAGADSDYV----PPGDSSPLLAPGETYSVTFT--K 76 (99)
T ss_dssp EEEEETTEEEEEEEES-----SSSBEEEE-------ETTS---SHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--S
T ss_pred EEEECCCCEEEEEECC-----CCCceEEE-------eccc---cccccccccc----CccccceecCCCCEEEEEeC--C
Confidence 4788999999998653 33455443 3211 0000000000 00014667788888888776 9
Q ss_pred ceeeEEeecchhhHhccceEEEEEe
Q 008799 510 PGVWFLHCHLEVHTSWGLKMAFVVD 534 (553)
Q Consensus 510 pG~w~~HCHil~H~d~GM~~~~~V~ 534 (553)
+|.|.|+|- - |...||-..+.|+
T Consensus 77 ~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 77 PGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CeEEEEEcC-C-CcccCCEEEEEEC
Confidence 999999999 5 9999999999885
No 58
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.71 E-value=0.0072 Score=65.23 Aligned_cols=78 Identities=15% Similarity=0.372 Sum_probs=58.4
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
.+.++.|+.|.+.+.|.....+..|-|-+-++.. -..+.|+....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCCceEEEEEEcCC
Confidence 3678999999999999543346677777754422 235668899999999999
Q ss_pred ceeeEEeecchhhH-hccceEEEEEeC
Q 008799 510 PGVWFLHCHLEVHT-SWGLKMAFVVDN 535 (553)
Q Consensus 510 pG~w~~HCHil~H~-d~GM~~~~~V~~ 535 (553)
||.|.+||...-|. ..+|...+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999874322 138888888864
No 59
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.51 E-value=0.011 Score=49.36 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=41.8
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
.+.++.|+.+.+++.|.+ ...|-|.+-+ . .-...+++|+...+.|.++.
T Consensus 36 ~i~v~~G~~v~l~~~N~~---~~~h~~~i~~-------~---------------------~~~~~l~~g~~~~~~f~~~~ 84 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNND---SRPHEFVIPD-------L---------------------GISKVLPPGETATVTFTPLK 84 (104)
T ss_dssp EEEEETTCEEEEEEEE-S---SS-EEEEEGG-------G---------------------TEEEEE-TT-EEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEEECC---CCcEEEEECC-------C---------------------ceEEEECCCCEEEEEEcCCC
Confidence 478999999999999965 3334444443 1 11368899999999999999
Q ss_pred ceeeEEeecchhhHhccc
Q 008799 510 PGVWFLHCHLEVHTSWGL 527 (553)
Q Consensus 510 pG~w~~HCHil~H~d~GM 527 (553)
||.|-|+|-+-.+ ..|.
T Consensus 85 ~G~y~~~C~~~~~-m~G~ 101 (104)
T PF13473_consen 85 PGEYEFYCTMHPN-MKGT 101 (104)
T ss_dssp -EEEEEB-SSS-T-TB--
T ss_pred CEEEEEEcCCCCc-ceec
Confidence 9999999995554 3444
No 60
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.033 Score=48.85 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=63.1
Q ss_pred CCCCCeEeecCCCEEEEEEEeCCC--CCce---------eeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCC
Q 008799 50 KFPGPTLHAREDDNVIVRVTNHVK--YNVT---------IHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQR 118 (553)
Q Consensus 50 ~~pGP~i~v~~Gd~v~v~l~N~l~--~~~~---------iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~ 118 (553)
.+++-.+.++.|++++..+.|.-. ...+ .-.|..... -+++- ......+.||++-+..|.. ..+
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~---Dme~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILAD---DMEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCC---ccccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 356678999999999999999753 1111 112222222 13331 1122468999999999998 789
Q ss_pred cceEEecChhhhh-ccceeeEEEcC
Q 008799 119 GTLLWHAHISWLR-ATVHGAIVILP 142 (553)
Q Consensus 119 Gt~wYH~H~~~~~-~Gl~G~liV~~ 142 (553)
|.|-+-|-..+.+ +||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999988 89999999864
No 61
>PRK02710 plastocyanin; Provisional
Probab=95.97 E-value=0.028 Score=48.17 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=50.2
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
.+.++.|++|+|+ |.+ ...|.+.+.+... + ...-..+.++....+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~---------~---------------~~~~~~~~pg~t~~~tF~~-- 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK---LAPHNAVFDGAKE---------L---------------SHKDLAFAPGESWEETFSE-- 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC---CCCceEEecCCcc---------c---------------cccccccCCCCEEEEEecC--
Confidence 4688999999986 422 4567776542110 0 0011356788887777764
Q ss_pred ceeeEEeecchhhHhccceEEEEEe
Q 008799 510 PGVWFLHCHLEVHTSWGLKMAFVVD 534 (553)
Q Consensus 510 pG~w~~HCHil~H~d~GM~~~~~V~ 534 (553)
||.|.|+|= .|...||-..+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999884
No 62
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.20 E-value=0.11 Score=44.14 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=30.1
Q ss_pred CCcEEEEEEEecCceeeEEeecchhhHhccceEEEEEeCCC
Q 008799 497 TAGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNGK 537 (553)
Q Consensus 497 ~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~ 537 (553)
++....+ +++.+|.|-|+|= .|...||-..+.|.++.
T Consensus 54 ~g~~~~~--tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 54 INEEYTV--TVTEEGVYGVKCT--PHYGMGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEE--EeCCCEEEEEEcC--CCccCCCEEEEEECCCC
Confidence 4555444 4478999999998 99999999999998753
No 63
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.28 E-value=0.34 Score=49.72 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=52.1
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeC-CCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhhc
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWH-GVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRA 132 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~H-G~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 132 (553)
..+.+..|+ +.+.|+|....++..-.- |..+.. . ...|.||.+.++.+++ .+|+|-|+|-.+ .
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Efe~~~~~~vv~-----e-----~EnIaPG~s~~l~~~L--~pGtY~~~C~~~---~ 107 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEWEILKGVMVVE-----E-----RENIAPGFSQKMTANL--QPGEYDMTCGLL---T 107 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceEEeeccccccc-----c-----ccccCCCCceEEEEec--CCceEEeecCcC---C
Confidence 689999996 899999998766442111 111100 0 1469999999998876 699999999332 3
Q ss_pred cceeeEEEcCCC
Q 008799 133 TVHGAIVILPKR 144 (553)
Q Consensus 133 Gl~G~liV~~~~ 144 (553)
.+.|.|+|....
T Consensus 108 ~~~g~l~Vtg~~ 119 (375)
T PRK10378 108 NPKGKLIVKGEA 119 (375)
T ss_pred CCCceEEEeCCC
Confidence 358899998653
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.26 E-value=0.18 Score=44.40 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=61.2
Q ss_pred EEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCC-CCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 431 YRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPN-KDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 431 ~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~-~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
..++-|++++.++.|.. ...|=|-+= ++....+ .+... +.+ ... -.-..++.+.||....+-+.+.+
T Consensus 65 ~~v~aG~tv~~v~~n~~---el~hef~~~---~~~~~~~--~~~~~~~~~-Dme---~d~~~~v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 65 FEVKAGETVRFVLKNEG---ELKHEFTMD---APDKNLE--HVTHMILAD-DME---HDDPNTVTLAPGKSGELVVVFTG 132 (158)
T ss_pred ccccCCcEEeeeecCcc---cceEEEecc---Cccccch--hHHHhhhCC-ccc---cCCcceeEeCCCCcEEEEEEecC
Confidence 46678999999999865 233433322 1111110 00000 000 000 01234899999999999999999
Q ss_pred ceeeEEeecchhhHhccceEEEEEe
Q 008799 510 PGVWFLHCHLEVHTSWGLKMAFVVD 534 (553)
Q Consensus 510 pG~w~~HCHil~H~d~GM~~~~~V~ 534 (553)
+|.|-|-|-|-+|-+.||-..|.|.
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CccEEEEecCCCcccCCcEEEEEeC
Confidence 9999999999999999999999885
No 65
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=94.03 E-value=0.38 Score=40.77 Aligned_cols=73 Identities=26% Similarity=0.434 Sum_probs=47.4
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
.+.++.|++|.|+-... ...|-. .+.+.+.|+.. .....++....+.| +.
T Consensus 43 ~ltV~~GdTVtw~~~~d----~~~HnV---------~s~~~~~f~s~---------------~~~~~~G~t~s~Tf--~~ 92 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE----GGGHNV---------VSDGDGDLDES---------------ERVSEEGTTYEHTF--EE 92 (115)
T ss_pred EEEECCCCEEEEEECCC----CCCEEE---------EECCCCCcccc---------------ccccCCCCEEEEEe--cC
Confidence 47889999999974331 223433 33322233211 11234566666655 78
Q ss_pred ceeeEEeecchhhHhccceEEEEEe
Q 008799 510 PGVWFLHCHLEVHTSWGLKMAFVVD 534 (553)
Q Consensus 510 pG~w~~HCHil~H~d~GM~~~~~V~ 534 (553)
||.|-|+|= .|...||-..+.|+
T Consensus 93 ~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 93 PGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CcEEEEEcc--CCCCCCCEEEEEEC
Confidence 999999998 89999999999884
No 66
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.82 E-value=0.29 Score=41.57 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=54.8
Q ss_pred CeEeecC-CCEEEEEEEeCCCCCceeeeCCCcccCCC--------------CCCCCCC-----cc-CCCCCCCCceEEEE
Q 008799 54 PTLHARE-DDNVIVRVTNHVKYNVTIHWHGVRQLRTG--------------WYDGPAY-----IT-QCPIQPGQSYVYNF 112 (553)
Q Consensus 54 P~i~v~~-Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~--------------~~DGv~~-----~t-q~~i~pG~~~~y~~ 112 (553)
..|.|.+ |.+|.|+|.|....+-..--|-+-..... -.|=+|- +. -..|.|||+.+..|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 6799998 58999999998543332222311110000 0111221 10 13489999999999
Q ss_pred EeCC-CCcc-eEEecChhhhhccceeeEE
Q 008799 113 TLTG-QRGT-LLWHAHISWLRATVHGAIV 139 (553)
Q Consensus 113 ~~~~-~~Gt-~wYH~H~~~~~~Gl~G~li 139 (553)
+++. .+|+ |-|-|-..+....|.|.+.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 9842 5786 9999999888878888775
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.77 E-value=0.56 Score=40.17 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=48.9
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChh-hh-h
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHIS-WL-R 131 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~-~ 131 (553)
+.|.+..|++|++++++. +.-+++...++... .-+.||+.....|++ +.+|+|++.|..- +. .
T Consensus 46 ~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~k-------------~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE-DVIHSFWIPELGIK-------------MDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SEEEEETTSEEEEEEEES-SS-EEEEETTCTEE-------------EEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred ceecccccceEeEEEEcC-CccccccccccCcc-------------cccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 799999999999999995 33333333222211 235789999999998 8999999999742 22 2
Q ss_pred ccceeeEEE
Q 008799 132 ATVHGAIVI 140 (553)
Q Consensus 132 ~Gl~G~liV 140 (553)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 566666655
No 68
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=91.74 E-value=1.2 Score=35.23 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=44.3
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
.+.+..|++|.|+ |.. ...|.++.+...+ +..+ +. ...+.++.... ++++.
T Consensus 12 ~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~~~--~tf~~ 62 (83)
T TIGR02657 12 ELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQAYS--LTFTE 62 (83)
T ss_pred EEEECCCCEEEEE--ECC---CCCccEEecCCCC-------cccc--------------cc-ccccCCCCEEE--EECCC
Confidence 4788999999984 432 4578887653211 0000 01 11334555444 45578
Q ss_pred ceeeEEeecchhhHhccceEEEEEe
Q 008799 510 PGVWFLHCHLEVHTSWGLKMAFVVD 534 (553)
Q Consensus 510 pG~w~~HCHil~H~d~GM~~~~~V~ 534 (553)
||.|.|||=+ |- +|-..+.|+
T Consensus 63 ~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 63 AGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CEEEEEEcCC--CC--CCeEEEEEC
Confidence 9999999986 44 588888774
No 69
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=89.90 E-value=4.8 Score=37.18 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=58.8
Q ss_pred eeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCC-CC--CCCCC--CCCCCCcceeeEecCCcEEE
Q 008799 428 TRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDP-NK--DPQKF--NLVDPVERNTISVPTAGWTA 502 (553)
Q Consensus 428 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~-~~--~~~~~--~~~~p~~rDTv~vp~~g~~~ 502 (553)
...+.++.|-.|++.+.|.+ .+. |.|-|+..+....+. .. +.+-. -...+.--..--+++|....
T Consensus 85 ~m~i~VPAGw~V~i~f~N~~---~l~-------Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 85 QMTIYVPAGWNVQITFTNQE---SLP-------HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred cEEEEEcCCCEEEEEEEcCC---CCC-------eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 34578899999999999964 343 466677554221110 00 00000 00000000001133455555
Q ss_pred EEEEecCceeeEEeecchhhHhccceEEEEEeCC
Q 008799 503 IRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNG 536 (553)
Q Consensus 503 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 536 (553)
.-|..-.+|.|.+=|=|.-|...||-..+.|.+.
T Consensus 155 ~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 155 GVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred EEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 5565557999999999999999999999998754
No 70
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=87.36 E-value=5.6 Score=34.01 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=52.0
Q ss_pred eeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEe
Q 008799 428 TRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRA 507 (553)
Q Consensus 428 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 507 (553)
...+.++.|+.|.+.+.+. +..|.|.+-.... -+.+.||....+.|++
T Consensus 45 ~~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~----------------------------k~d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE----DVIHSFWIPELGI----------------------------KMDAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEES----SS-EEEEETTCTE----------------------------EEEEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcC----CccccccccccCc----------------------------ccccccccceeeeeee
Confidence 3468899999999999984 5668777765433 2355678889999999
Q ss_pred cCceeeEEeecchhhHhc-cceEEEEE
Q 008799 508 DNPGVWFLHCHLEVHTSW-GLKMAFVV 533 (553)
Q Consensus 508 dnpG~w~~HCHil~H~d~-GM~~~~~V 533 (553)
+.||.|-..|...=.... -|-..++|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 999999999987654433 34444443
No 71
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=87.12 E-value=2.6 Score=39.63 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=53.8
Q ss_pred eEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEec
Q 008799 429 RLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRAD 508 (553)
Q Consensus 429 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 508 (553)
+.+.++.|+.|++.+.+. +..|.|.+-+ -+ --..+-||....+.|+++
T Consensus 117 ~~l~vp~g~~v~~~~ts~----DV~Hsf~ip~-------~~---------------------~k~da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSK----DVIHSFWVPE-------LG---------------------GKIDAIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeC----chhhcccccc-------cC---------------------ceEEecCCcEEEEEEEeC
Confidence 357899999999999874 3445554432 22 012345788899999999
Q ss_pred CceeeEEeecc---hhhHhccceEEEEEeCC
Q 008799 509 NPGVWFLHCHL---EVHTSWGLKMAFVVDNG 536 (553)
Q Consensus 509 npG~w~~HCHi---l~H~d~GM~~~~~V~~~ 536 (553)
.||.|...|-. ..| ..|...++|.++
T Consensus 165 ~~G~y~~~c~e~cG~~h--~~M~~~v~v~~~ 193 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGH--SLMLFKVVVVER 193 (201)
T ss_pred CCEEEEEEehhhCCcCc--cCCeEEEEEECH
Confidence 99999999998 455 678888877654
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=86.81 E-value=4.2 Score=38.29 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=55.8
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecCh-hhh-h
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHI-SWL-R 131 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~-~~~-~ 131 (553)
..|.+..|+.|++++++.. .+ ||..++.- |+ +.-.-||..-+..|++ +++|+|...|.. .|. .
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 6899999999999999853 22 56655421 11 1335689999999987 899999999874 222 2
Q ss_pred ccceeeEEEcCCC
Q 008799 132 ATVHGAIVILPKR 144 (553)
Q Consensus 132 ~Gl~G~liV~~~~ 144 (553)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 7888999888754
No 73
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=85.57 E-value=10 Score=29.93 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=37.5
Q ss_pred EEEEEEEecCCCceEEEEEc-CceEEE--EeeCCCccc--------ceEeeEEEeCCCccEEEEEEeCCC---CCeeEEE
Q 008799 215 TYLLRIVNAAVNDELFFKIA-GHNLTV--VEVDSSYTK--------PFKTDTIFIGPGQTTNALLTADKK---IGKYLIT 280 (553)
Q Consensus 215 ~~rlRliN~~~~~~~~~~i~-gh~~~v--ia~DG~~~~--------p~~~d~~~l~pgeR~dv~v~~~~~---~g~~~i~ 280 (553)
.+.|++.|.+. ....|.+. |+.+.+ ...+|..+- -.......|.|||...+-...+.. ||.|.+.
T Consensus 3 ~~~l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 35788899885 45557765 665444 444666551 123578999999999888888774 5888875
Q ss_pred E
Q 008799 281 I 281 (553)
Q Consensus 281 ~ 281 (553)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 3
No 74
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=85.17 E-value=4.5 Score=34.91 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=45.4
Q ss_pred EEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecCc
Q 008799 431 YRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADNP 510 (553)
Q Consensus 431 ~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp 510 (553)
++++.|++|+|+-.. ...|..+.=+-. +|..-+++..-.+.....-|. -|
T Consensus 56 v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~-----------------------~~~g~~~~~~~~~~s~~~Tfe--~~ 105 (128)
T COG3794 56 VTVKPGDTVTWVNTD-----SVGHNVTAVGGM-----------------------DPEGSGTLKAGINESFTHTFE--TP 105 (128)
T ss_pred EEECCCCEEEEEECC-----CCCceEEEeCCC-----------------------CcccccccccCCCcceEEEec--cc
Confidence 688999999997432 224554432211 111122333333455555554 49
Q ss_pred eeeEEeecchhhHhccceEEEEEeC
Q 008799 511 GVWFLHCHLEVHTSWGLKMAFVVDN 535 (553)
Q Consensus 511 G~w~~HCHil~H~d~GM~~~~~V~~ 535 (553)
|.|.|.|- .|..+||-..+.|++
T Consensus 106 G~Y~Y~C~--PH~~~gM~G~IvV~~ 128 (128)
T COG3794 106 GEYTYYCT--PHPGMGMKGKIVVGE 128 (128)
T ss_pred ceEEEEec--cCCCCCcEEEEEeCC
Confidence 99999994 688999999998863
No 75
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=84.40 E-value=15 Score=33.48 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=58.4
Q ss_pred CeeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCC-CCCCCC--CCCCCCC--CCCCcceeeEecCCcEE
Q 008799 427 GTRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSG-NFDPNK--DPQKFNL--VDPVERNTISVPTAGWT 501 (553)
Q Consensus 427 ~~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g-~~~~~~--~~~~~~~--~~p~~rDTv~vp~~g~~ 501 (553)
+...+.++.|-.|.+++.|.. ... |.+-++..+.. ++.+.- +.+..+. ..+..-..=-+..|...
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e---~~p-------Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYE---SLP-------HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCC---CCC-------ccEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 346788999999999999964 333 34555554321 111110 0000000 00000000112344455
Q ss_pred EEEEEecCceeeEEeecchhhHhccceEEEEEeCC
Q 008799 502 AIRFRADNPGVWFLHCHLEVHTSWGLKMAFVVDNG 536 (553)
Q Consensus 502 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 536 (553)
..-|..-.||.|.+=|-+.-|.+.||-..+.|-..
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 55666668999999999999999999999988643
No 76
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.42 E-value=64 Score=34.02 Aligned_cols=176 Identities=19% Similarity=0.287 Sum_probs=101.3
Q ss_pred EeecCCCE--EEEEEEeCC--CCCceeeeCCCccc-CCCCCCCCCCccCCCCCCCCceEEEEEe-C---CCCcceEEecC
Q 008799 56 LHAREDDN--VIVRVTNHV--KYNVTIHWHGVRQL-RTGWYDGPAYITQCPIQPGQSYVYNFTL-T---GQRGTLLWHAH 126 (553)
Q Consensus 56 i~v~~Gd~--v~v~l~N~l--~~~~~iH~HG~~~~-~~~~~DGv~~~tq~~i~pG~~~~y~~~~-~---~~~Gt~wYH~H 126 (553)
+.+.++++ +.|++.|.- ++...+-.-|+.-- ...+-+|---+|...+.||++.+....+ + -.+|+
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~------ 351 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGT------ 351 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCc------
Confidence 55666665 667888886 45566666665521 1223466666777889999999998888 1 12444
Q ss_pred hhhhhccceeeEEEcCCCCCCCCCCCCCcceEEEEeeeeccCHHHHHHHHHhCCCCCCCCceEEECCcCCCCCCCCCCCe
Q 008799 127 ISWLRATVHGAIVILPKRSVPYPFPKADKEKIIVFGEWWKADVEAVINQATQMGVAPNVSDAHTINGHPGPVTNCTSQGF 206 (553)
Q Consensus 127 ~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~ 206 (553)
|-..|+-.... ...++.++-+.- .|. .....-+-||. .
T Consensus 352 --------Ynv~I~A~s~s------~v~~e~~lki~~---------------~g~--~~~~v~l~~g~-----------~ 389 (513)
T COG1470 352 --------YNVTITASSSS------GVTRELPLKIKN---------------TGS--YNELVKLDNGP-----------Y 389 (513)
T ss_pred --------eeEEEEEeccc------cceeeeeEEEEe---------------ccc--cceeEEccCCc-----------E
Confidence 43434332221 123444444432 010 01122333454 4
Q ss_pred EEEEEcCC--EEEEEEEecCCCc--eEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCcc--EEEEEEeCC--CCCeeE
Q 008799 207 TLHVESGK--TYLLRIVNAAVND--ELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQT--TNALLTADK--KIGKYL 278 (553)
Q Consensus 207 ~~~v~~G~--~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR--~dv~v~~~~--~~g~~~ 278 (553)
.+++.+|+ .+++++-|.|+.. .+.+.+.+-+=+-+.+|+.. .+ .|.||+| +++.++++. .+|+|.
T Consensus 390 ~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~-----I~--sL~pge~~tV~ltI~vP~~a~aGdY~ 462 (513)
T COG1470 390 RLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDEST-----IP--SLEPGESKTVSLTITVPEDAGAGDYR 462 (513)
T ss_pred EEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECccc-----cc--ccCCCCcceEEEEEEcCCCCCCCcEE
Confidence 58888985 6799999999554 45677766555666666652 23 3455654 555555554 358899
Q ss_pred EEEeeccc
Q 008799 279 ITISPFMD 286 (553)
Q Consensus 279 i~~~~~~~ 286 (553)
+......|
T Consensus 463 i~i~~ksD 470 (513)
T COG1470 463 ITITAKSD 470 (513)
T ss_pred EEEEEeec
Confidence 88765433
No 77
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=81.46 E-value=2.9 Score=33.08 Aligned_cols=58 Identities=21% Similarity=0.313 Sum_probs=31.1
Q ss_pred eEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCC---ccCCCCCCCCceEEEEEeCCC---CcceEE
Q 008799 55 TLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAY---ITQCPIQPGQSYVYNFTLTGQ---RGTLLW 123 (553)
Q Consensus 55 ~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~---~tq~~i~pG~~~~y~~~~~~~---~Gt~wY 123 (553)
+|+..-|++..+.|.|...+. + -.|+||-.+ +.+..|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~---------v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKE---------V--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--E---------E--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCE---------E--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 566666777666666542211 1 136788654 334569999999999999433 688854
No 78
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=80.86 E-value=12 Score=32.02 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=51.1
Q ss_pred eEEEEEcC-CEEEEEEEecCCCc----eEEEEEc-CceEEEEe-------eCCCcccc----eEeeEEEeCCCccEEEEE
Q 008799 206 FTLHVESG-KTYLLRIVNAAVND----ELFFKIA-GHNLTVVE-------VDSSYTKP----FKTDTIFIGPGQTTNALL 268 (553)
Q Consensus 206 ~~~~v~~G-~~~rlRliN~~~~~----~~~~~i~-gh~~~via-------~DG~~~~p----~~~d~~~l~pgeR~dv~v 268 (553)
..|+|+++ +.+.+.|-|.|... .|++-|- .-.++-++ .|-.|+.+ +...+=.|++||..+|.+
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 56899984 88999999998543 2333332 11222222 24455633 245677999999999999
Q ss_pred EeCC-CCC-eeEEEEe
Q 008799 269 TADK-KIG-KYLITIS 282 (553)
Q Consensus 269 ~~~~-~~g-~~~i~~~ 282 (553)
+++. .+| +|.+.|.
T Consensus 96 ~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCS 111 (125)
T ss_pred ECCCCCCCCcceEEEc
Confidence 9874 356 5999985
No 79
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=77.77 E-value=9.6 Score=36.99 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=56.3
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecCh-hhhh-
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHI-SWLR- 131 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~-~~~~- 131 (553)
..|.+..|.+|+++++-. +.- ||..++.-+ . +.-.-||...+..+++ +++|+|.-+|+. .|..
T Consensus 137 n~l~lPv~~~V~f~ltS~-DVi-----HsF~IP~l~-------~-k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVI-----HSFWIPQLG-------G-KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhc-----eeEEecCCC-------c-eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999998876 222 344433220 0 1235689999999987 899999999984 3333
Q ss_pred ccceeeEEEcCCCC
Q 008799 132 ATVHGAIVILPKRS 145 (553)
Q Consensus 132 ~Gl~G~liV~~~~~ 145 (553)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 78999999998864
No 80
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=77.28 E-value=3.3 Score=42.84 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=52.1
Q ss_pred CeEeecCCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChh--hhh
Q 008799 54 PTLHAREDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHIS--WLR 131 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~--~~~ 131 (553)
-+..|+.||.|++.++|-....-.+| |.-.+. =|+. ..+.|-++-.|.|.+ +-+|.+||.|--. ...
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~th--gfv~p~----~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTH--GFVIPN----YGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccc--eeeecc----CceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 47888999999999888876555554 333221 1221 357888889999987 7899999986422 222
Q ss_pred ccceeeEEEc
Q 008799 132 ATVHGAIVIL 141 (553)
Q Consensus 132 ~Gl~G~liV~ 141 (553)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 5566777775
No 81
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=70.99 E-value=20 Score=34.75 Aligned_cols=62 Identities=26% Similarity=0.296 Sum_probs=47.9
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.++|++-... .. |.|++ |.....+..-||...+..+++++ +|.|..+|..++
T Consensus 137 n~l~lPv~~~V~f~ltS~D--Vi-------HsF~I---------P~l~~k~d~iPG~~~~~~~~~~~-~G~Y~g~Cae~C 197 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD--VI-------HSFWI---------PQLGGKIDAIPGMTTELWLTANK-PGTYRGICAEYC 197 (247)
T ss_pred ceEEEeCCCeEEEEEEech--hc-------eeEEe---------cCCCceeeecCCceEEEEEecCC-CeEEEEEcHhhc
Confidence 6689999999999887653 23 34444 55556677888999999999997 699999998765
Q ss_pred c
Q 008799 286 D 286 (553)
Q Consensus 286 ~ 286 (553)
.
T Consensus 198 G 198 (247)
T COG1622 198 G 198 (247)
T ss_pred C
Confidence 3
No 82
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=65.33 E-value=26 Score=27.97 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=40.5
Q ss_pred CCeEeec---CCCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEe
Q 008799 53 GPTLHAR---EDDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWH 124 (553)
Q Consensus 53 GP~i~v~---~Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH 124 (553)
.|.+.++ ....|.|+|.|.......+........ .+ ...+..|.||++.+..|.+. ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~--~~~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GG--GPWTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CC--CCEEEEECCCCEEEEEEeec--CCCCcEE
Confidence 3555554 235899999999887777776653221 11 11346799999999999872 3344554
No 83
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=63.41 E-value=49 Score=33.65 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=14.4
Q ss_pred CCCCCCCCceEEEEEe
Q 008799 99 QCPIQPGQSYVYNFTL 114 (553)
Q Consensus 99 q~~i~pG~~~~y~~~~ 114 (553)
+.||.|||+.+...++
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4689999999999988
No 84
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=60.57 E-value=22 Score=34.12 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=51.1
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
-+.++.|+.|++.+... +..| +|+|-+-+ ..+|.+ ||-...+.|+++.
T Consensus 140 el~lP~g~pV~~~ltS~----DViH-------SF~VP~l~------------------~K~Dai---PG~~n~~~~~~~~ 187 (226)
T TIGR01433 140 EIAFPVNTPINFKITSN----SVMN-------SFFIPQLG------------------SQIYAM---AGMQTKLHLIANE 187 (226)
T ss_pred eEEEECCCEEEEEEEEC----chhh-------hhhhhhcC------------------CeeecC---CCceEEEEEEeCC
Confidence 36889999999999874 3434 44554443 124444 6777889999999
Q ss_pred ceeeEEeecchhhH-hccceEEEEEeC
Q 008799 510 PGVWFLHCHLEVHT-SWGLKMAFVVDN 535 (553)
Q Consensus 510 pG~w~~HCHil~H~-d~GM~~~~~V~~ 535 (553)
||.|.-.|--.-=. ...|...++|.+
T Consensus 188 ~G~y~g~CaE~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 188 PGVYDGISANYSGPGFSGMKFKAIATD 214 (226)
T ss_pred CEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 99999999765322 245766776654
No 85
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=57.99 E-value=32 Score=35.59 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=43.2
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEe
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITIS 282 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~ 282 (553)
..+++++|+ ++|.+.|.+... ++|+++ +|+.+. ...=.|.||.+..+.+.+. ||+|.+.|.
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~vv---~e~EnIaPG~s~~l~~~L~--pGtY~~~C~ 104 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMVV---EERENIAPGFSQKMTANLQ--PGEYDMTCG 104 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCc--------ceEEee--cccccc---ccccccCCCCceEEEEecC--CceEEeecC
Confidence 669999996 999999998544 344544 232210 1123899999888887773 799999995
No 86
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=57.40 E-value=18 Score=28.01 Aligned_cols=60 Identities=27% Similarity=0.395 Sum_probs=26.4
Q ss_pred cCCCE--EEEEEEeCCCCC---ceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeC----CCCcceE
Q 008799 59 REDDN--VIVRVTNHVKYN---VTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLT----GQRGTLL 122 (553)
Q Consensus 59 ~~Gd~--v~v~l~N~l~~~---~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~----~~~Gt~w 122 (553)
++|+. +.++|+|....+ ..+.+- .+.+|.......+-..|+||++.+..|.+. -.+|+|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~----~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS----LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE------TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe----CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 45653 556777876433 223221 245555221111113699999999999882 2367763
No 87
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.31 E-value=42 Score=32.18 Aligned_cols=75 Identities=12% Similarity=0.215 Sum_probs=52.8
Q ss_pred eEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEec
Q 008799 429 RLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRAD 508 (553)
Q Consensus 429 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 508 (553)
+.+.++.|+.|++.+.+. +..|.|.+-. -+. -+.+-||....+.|+++
T Consensus 140 n~l~lP~~~~v~~~~ts~----DViHsf~ip~-------~~~---------------------k~d~~Pg~~~~~~~~~~ 187 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSA----DVIHSWTVPS-------LGV---------------------KVDAIPGRLNQLSFEPK 187 (228)
T ss_pred CeEEEeeCcEEEEEEEcC----ccccceeccc-------cCc---------------------eeECCCCcceeEEEEeC
Confidence 457899999999999874 4455555432 220 12344777888899999
Q ss_pred CceeeEEeecchhhH-hccceEEEEEeC
Q 008799 509 NPGVWFLHCHLEVHT-SWGLKMAFVVDN 535 (553)
Q Consensus 509 npG~w~~HCHil~H~-d~GM~~~~~V~~ 535 (553)
.||.|...|.-+-.. +..|-..++|.+
T Consensus 188 ~~g~y~~~C~e~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 188 RPGVFYGQCSEICGANHSFMPIVVEAVP 215 (228)
T ss_pred CCEEEEEECccccCcCcCCCeEEEEEEC
Confidence 999999999987655 345666666654
No 88
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=56.78 E-value=94 Score=29.02 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=52.7
Q ss_pred eEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEec
Q 008799 429 RLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRAD 508 (553)
Q Consensus 429 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 508 (553)
..+.++.|+.+++.+... +..|.|.+-.... .+| +-||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-------------------------k~d---~~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-------------------------KMD---AIPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCc-------------------------eee---cCCCceEEEEEEcC
Confidence 347889999999998763 4556666543211 123 33778889999999
Q ss_pred CceeeEEeecchhhH-hccceEEEEEeCC
Q 008799 509 NPGVWFLHCHLEVHT-SWGLKMAFVVDNG 536 (553)
Q Consensus 509 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 536 (553)
.||.|-.-|.-+-=. ...|-..++|.++
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 999999999976433 3456666666643
No 89
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=52.77 E-value=35 Score=28.38 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=42.3
Q ss_pred EEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEecChhhhhccceeeEEEcCC
Q 008799 65 IVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHAHISWLRATVHGAIVILPK 143 (553)
Q Consensus 65 ~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~ 143 (553)
.|+++|.|.....|..|=-.-. .| .| ...+.||+++...|.. +--|+--|.|+..-.......-+.|-..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d----~D--lg--~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKD----DD--LG--WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCC----cc--CC--CEECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 4889999965555544433211 12 11 1468999999999986 5567777888865521223445555433
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=52.15 E-value=1.2e+02 Score=24.08 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=38.9
Q ss_pred EEEcCCEE--EEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEE-EeCCCccEEEEEEeCC-CCCeeEEEEee
Q 008799 209 HVESGKTY--LLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTI-FIGPGQTTNALLTADK-KIGKYLITISP 283 (553)
Q Consensus 209 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~-~l~pgeR~dv~v~~~~-~~g~~~i~~~~ 283 (553)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+.+.... .+|.|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 55667765 478899987654434333 23455433 34445 8899998887777654 46888887753
No 91
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.40 E-value=52 Score=31.56 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=44.9
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.+||++-+.. .. |.|.| |...-.+..-||..-.+.+.+++ ||.|...|..++
T Consensus 140 n~l~lP~~~~v~~~~ts~D--Vi-------Hsf~i---------p~~~~k~d~~Pg~~~~~~~~~~~-~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD--VI-------HSWTV---------PSLGVKVDAIPGRLNQLSFEPKR-PGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc--cc-------cceec---------cccCceeECCCCcceeEEEEeCC-CEEEEEECcccc
Confidence 5689999999999998743 23 44444 33333456678999999999887 799999998654
No 92
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=48.63 E-value=84 Score=24.15 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=29.9
Q ss_pred EcCCE--EEEEEEecCCCc--eEEEEEcCceEEEEeeCCCcc--cceEeeEEEeCCCccEEEEEEeC--C--CCCeeEEE
Q 008799 211 ESGKT--YLLRIVNAAVND--ELFFKIAGHNLTVVEVDSSYT--KPFKTDTIFIGPGQTTNALLTAD--K--KIGKYLIT 280 (553)
Q Consensus 211 ~~G~~--~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~~--~p~~~d~~~l~pgeR~dv~v~~~--~--~~g~~~i~ 280 (553)
.+|+. +++.+-|.+... ...+++. .-+|-.+ .|.... .|.||+...+-++.. . .+|+|.|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 45654 568888988543 2333333 3344332 344344 889998666555543 2 35899887
Q ss_pred Ee
Q 008799 281 IS 282 (553)
Q Consensus 281 ~~ 282 (553)
..
T Consensus 73 ~~ 74 (78)
T PF10633_consen 73 VT 74 (78)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 93
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.52 E-value=66 Score=30.05 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=43.4
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
-.+.+..|+.+||++-..- .. |.|.| |...-.+..-||..-.+.+.+++ +|.|...|..++
T Consensus 116 ~~l~lp~g~~v~~~ltS~D--Vi-------Hsf~v---------p~l~~k~d~~PG~~~~~~~~~~~-~G~y~g~C~e~C 176 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSD--VI-------HSFSV---------PDLNLKMDAIPGRINHLFFCPDR-HGVFVGYCSELC 176 (194)
T ss_pred ceEEEeCCCEEEeeeecCc--cc-------cceec---------cccCceeecCCCceEEEEEEcCC-CEEEEEEeehhh
Confidence 3488999999999886443 33 33443 33333456668999999998887 799999998654
No 94
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=47.97 E-value=88 Score=23.42 Aligned_cols=65 Identities=15% Similarity=0.326 Sum_probs=36.6
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEe
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITIS 282 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~ 282 (553)
..+++++|+++++.+-+.+. ...+.|...+|..+....-.. -..+..-.+.+...+ +|+|.|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~-~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA-AGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESS-SEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCC-CEEEEEEEE
Confidence 56899999999988877764 222556666654332111111 011222334445554 699998764
No 95
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=46.80 E-value=51 Score=31.62 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=45.3
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.+||++-.... + |.|.| |...-....-||..-.+.+++++ +|.|...|..++
T Consensus 139 nel~lP~g~pV~~~ltS~DV---i------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~~-~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSV---M------NSFFI---------PQLGSQIYAMAGMQTKLHLIANE-PGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECch---h------hhhhh---------hhcCCeeecCCCceEEEEEEeCC-CEEEEEEchhhc
Confidence 56788888888887765442 2 44444 55555566678999999999987 799999998664
Q ss_pred c
Q 008799 286 D 286 (553)
Q Consensus 286 ~ 286 (553)
.
T Consensus 200 G 200 (226)
T TIGR01433 200 G 200 (226)
T ss_pred C
Confidence 3
No 96
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=46.77 E-value=60 Score=26.16 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=40.0
Q ss_pred EEEcCCEEEEEEE--ecCCCceEEEEEcC--ceEEEEeeCCCcccceEeeEE-EeCCCccEEEEEEeCCCC--CeeEEEE
Q 008799 209 HVESGKTYLLRIV--NAAVNDELFFKIAG--HNLTVVEVDSSYTKPFKTDTI-FIGPGQTTNALLTADKKI--GKYLITI 281 (553)
Q Consensus 209 ~v~~G~~~rlRli--N~~~~~~~~~~i~g--h~~~via~DG~~~~p~~~d~~-~l~pgeR~dv~v~~~~~~--g~~~i~~ 281 (553)
.-++||++.||.+ +... . . -...+ ..++|..-+|..+ ..... .......++..+..++.+ |.|.|++
T Consensus 10 iYrPGetV~~~~~~~~~~~-~-~-~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~ 83 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-D-F-KPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRV 83 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-T-C-SCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-c-c-ccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEE
Confidence 3589999999999 6652 1 0 11112 2355666556533 22223 345677888888887754 9999988
Q ss_pred ee
Q 008799 282 SP 283 (553)
Q Consensus 282 ~~ 283 (553)
..
T Consensus 84 ~~ 85 (99)
T PF01835_consen 84 KT 85 (99)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 97
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=42.69 E-value=30 Score=29.13 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=26.5
Q ss_pred EEEEEeCCCCC---ceeeeCCCcccCC---CCCCCCCCccCCCCCCCCceEEEE
Q 008799 65 IVRVTNHVKYN---VTIHWHGVRQLRT---GWYDGPAYITQCPIQPGQSYVYNF 112 (553)
Q Consensus 65 ~v~l~N~l~~~---~~iH~HG~~~~~~---~~~DGv~~~tq~~i~pG~~~~y~~ 112 (553)
.|++.|....+ .+=|||=-...+. =..+||-| -|..|.||++|+|.=
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtS 85 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTS 85 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcC
Confidence 36666776543 4568872221110 00344433 257799999999964
No 98
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=42.53 E-value=20 Score=29.33 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=28.7
Q ss_pred EEEECCCCCCCeEeecCCCEEEEEEEeCCCCCcee
Q 008799 44 IVTVNGKFPGPTLHAREDDNVIVRVTNHVKYNVTI 78 (553)
Q Consensus 44 ~~~~NG~~pGP~i~v~~Gd~v~v~l~N~l~~~~~i 78 (553)
-+.+||+.--|.=.|+.||.|+|++.|.+-.-..+
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v~Vl 69 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEFTVKVL 69 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEEEEEEE
Confidence 45699998889999999999999999987544443
No 99
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=41.49 E-value=63 Score=30.72 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=50.6
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
-+.++.|+.|++.+... +..| +|+|=+-+ ..+|.+ ||-...+.|+++.
T Consensus 131 ~l~iP~g~~v~~~ltS~----DViH-------sf~vP~l~------------------~k~dai---PG~~~~~~~~~~~ 178 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSA----DTMT-------SFWIPQLG------------------GQKYAM---TGMTMNWYLQADQ 178 (217)
T ss_pred cEEEECCCEEEEEEECC----chhh-------hhhchhhC------------------ceeecC---CCceEEEEEEeCC
Confidence 36789999999999864 3334 45554432 124544 6788889999999
Q ss_pred ceeeEEeecchhhH-hccceEEEEEeCC
Q 008799 510 PGVWFLHCHLEVHT-SWGLKMAFVVDNG 536 (553)
Q Consensus 510 pG~w~~HCHil~H~-d~GM~~~~~V~~~ 536 (553)
||.|--.|=-.-=. ..-|...++|.++
T Consensus 179 ~G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 179 VGTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred CEEEEEEehhhcCccccCCeEEEEEeCH
Confidence 99999999754322 2356666666543
No 100
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=40.83 E-value=95 Score=29.52 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=45.2
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.+||++-.... + |.|.| |...-....-||.+-.+-+++++ +|.|...|..++
T Consensus 130 n~l~iP~g~~v~~~ltS~DV---i------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~~-~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT---M------TSFWI---------PQLGGQKYAMTGMTMNWYLQADQ-VGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCch---h------hhhhc---------hhhCceeecCCCceEEEEEEeCC-CEEEEEEehhhc
Confidence 45778888888887765442 2 44444 65555666779999999999987 799999998664
Q ss_pred c
Q 008799 286 D 286 (553)
Q Consensus 286 ~ 286 (553)
.
T Consensus 191 G 191 (217)
T TIGR01432 191 G 191 (217)
T ss_pred C
Confidence 3
No 101
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=40.24 E-value=2e+02 Score=25.49 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=33.9
Q ss_pred eEeecCCCEEEEEEEeCCCC-----CceeeeC--C-CcccC-CCCCCCCCCc-----cCCCCCCCCceEEEEEe
Q 008799 55 TLHAREDDNVIVRVTNHVKY-----NVTIHWH--G-VRQLR-TGWYDGPAYI-----TQCPIQPGQSYVYNFTL 114 (553)
Q Consensus 55 ~i~v~~Gd~v~v~l~N~l~~-----~~~iH~H--G-~~~~~-~~~~DGv~~~-----tq~~i~pG~~~~y~~~~ 114 (553)
.=.+.+|.+..|.+.=...+ .+.+|-- | +.++. -+..||-... --||+.+||.++|.+.+
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~sl 122 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSL 122 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEe
Confidence 45567787776666554432 2233221 1 22211 1225663332 24999999999999987
No 102
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=39.72 E-value=1.4e+02 Score=28.74 Aligned_cols=61 Identities=16% Similarity=0.080 Sum_probs=43.2
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.+|+++-+.- .. |.|.+ |...-....-||..-.+.+.+++ +|.|...|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--Vi-------Hsf~v---------P~~~~k~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD--VI-------HSWTV---------PSLGVKVDAVPGRLNQIGFTITR-PGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCC--cc-------ccccc---------cccCcceecCCCceEEEEEEeCC-CEEEEEEChhhc
Confidence 4588899999999888743 23 44444 33333455568888888888886 799999997654
No 103
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=38.32 E-value=2e+02 Score=25.98 Aligned_cols=74 Identities=12% Similarity=0.124 Sum_probs=48.7
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
.+.++.|..+++.+... +..|.|.+-. .+ ...| +-||-...+.|.++.
T Consensus 74 ~LvLP~g~~Vr~~lTS~----DVIHSF~VP~-------lg------------------vK~D---avPGr~n~l~~~~~~ 121 (162)
T PTZ00047 74 RLTLPTRTHIRFLITAT----DVIHSWSVPS-------LG------------------IKAD---AIPGRLHKINTFILR 121 (162)
T ss_pred CEEEeCCCEEEEEEEeC----ccceeeeccc-------cC------------------ceee---ccCCceEEEEEecCC
Confidence 36789999999998763 4556665543 22 1122 336667788899999
Q ss_pred ceeeEEeecchhhHh-ccceEEEEEeC
Q 008799 510 PGVWFLHCHLEVHTS-WGLKMAFVVDN 535 (553)
Q Consensus 510 pG~w~~HCHil~H~d-~GM~~~~~V~~ 535 (553)
||.|...|.-+-=.. ..|-..++|..
T Consensus 122 ~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 122 EGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CeEEEEEcchhcCcCccCceEEEEEeC
Confidence 999999998664222 23555665543
No 104
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=37.93 E-value=1.7e+02 Score=24.49 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=28.6
Q ss_pred EEEEEecCCC-ceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCC
Q 008799 217 LLRIVNAAVN-DELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADK 272 (553)
Q Consensus 217 rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~ 272 (553)
++|++|++.. ..+.+.++|..+ ..+=. -....+.+.+.+|. +.|.++...
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~~---~~~v~--y~~~s~Y~~v~~G~-~~i~v~~~g 53 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTKV---FSNVA--YGQASDYLPVPPGT-YTIEVTPAG 53 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEEE---EccCC--CCcccCceEECCce-EEEEEEECC
Confidence 6899998876 466677766551 11111 11234567777777 666665443
No 105
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=37.39 E-value=58 Score=26.25 Aligned_cols=49 Identities=14% Similarity=0.290 Sum_probs=28.6
Q ss_pred EEEEEEEecCCCceEEEEEcCceEEEEeeCCCcc--c-c-eEeeEEEeCCCccEEE
Q 008799 215 TYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYT--K-P-FKTDTIFIGPGQTTNA 266 (553)
Q Consensus 215 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~--~-p-~~~d~~~l~pgeR~dv 266 (553)
.|++||-|.+.. .+.|-...+.+...||... + + +....=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 488999999976 3666677788877777532 1 1 2234557778885443
No 106
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=37.08 E-value=96 Score=26.78 Aligned_cols=49 Identities=10% Similarity=0.239 Sum_probs=33.8
Q ss_pred EEEEEEEecCCCceEEEEEcCceEEEEeeCCCcc----cceEeeEEEeCCCccEEE
Q 008799 215 TYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYT----KPFKTDTIFIGPGQTTNA 266 (553)
Q Consensus 215 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~----~p~~~d~~~l~pgeR~dv 266 (553)
.|++||.|.+... +.|-+..+.+...||... ..+....=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~~---vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRVP---VQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCCC---EEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 4889999988543 677778888888887642 123345557888886553
No 107
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=36.92 E-value=2.5e+02 Score=24.02 Aligned_cols=61 Identities=10% Similarity=0.089 Sum_probs=42.1
Q ss_pred EEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcc-------cceEeeEEEeCCCccEEEEEEeCCC
Q 008799 208 LHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYT-------KPFKTDTIFIGPGQTTNALLTADKK 273 (553)
Q Consensus 208 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-------~p~~~d~~~l~pgeR~dv~v~~~~~ 273 (553)
|++.....|+|++-..+ ..+|.|+|..+ ++.++... .+....++.+..|++++|.|...+.
T Consensus 54 ~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 54 FKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 67777677999998433 46688998876 45555432 3456678899999999999987653
No 108
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.67 E-value=1.4e+02 Score=28.68 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=42.7
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.+|+++.-.- .. |.|.+ |...-.+..-||.+-.+.+.+++ +|.|...|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--Vi-------Hsf~i---------p~~~~k~da~PG~~~~~~~~~~~-~G~~~g~C~e~C 200 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED--VL-------HSWAV---------PALGVKMDAVPGRLNQTAFIASR-PGVFYGQCSEIC 200 (230)
T ss_pred ceEEEecCcEEEEEEEeCc--cc-------cceec---------cccCCccccCCCceEEEEEEeCC-ceEEEEEChhhc
Confidence 4588899998888876543 23 44444 33333455668998888888887 799999998654
No 109
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.33 E-value=1.6e+02 Score=28.28 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=41.6
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.+||++.-.. .. |.|.| |...-.+..-||..-.+.+.+++ ||.|...|..++
T Consensus 140 n~lvlP~~~~v~~~~tS~D--Vi-------Hsf~i---------p~lg~k~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED--VL-------HSWAV---------PSLGLKTDAIPGRLNQTTLMSTR-PGLYYGQCSEIC 200 (227)
T ss_pred ceEEecCCCEEEEEEEECc--cc-------ccccc---------cccccceecCCCceEEEEEecCC-cEEEEEECcccc
Confidence 4578888888888876544 23 34443 33333455568888888888886 799999987654
No 110
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=35.16 E-value=1.2e+02 Score=25.98 Aligned_cols=53 Identities=17% Similarity=0.361 Sum_probs=42.0
Q ss_pred EEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCC
Q 008799 217 LLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKK 273 (553)
Q Consensus 217 rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~ 273 (553)
.|-+-|+.....+.+ .+..-...+|.+++.+....+.|.|-+..+++|+-++.
T Consensus 28 tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~ 80 (125)
T PF11322_consen 28 TLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDT 80 (125)
T ss_pred EEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccC
Confidence 455667776665544 45566788999999999999999999999999987664
No 111
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.31 E-value=1.3e+02 Score=28.91 Aligned_cols=75 Identities=11% Similarity=0.157 Sum_probs=50.8
Q ss_pred eEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEec
Q 008799 429 RLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRAD 508 (553)
Q Consensus 429 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 508 (553)
+-+.++.|+.+++.+.... .. |.|+|-+-|. ..| +-||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~D----Vi-------Hsf~ip~~~~------------------k~d---a~PG~~~~~~~~~~ 187 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED----VL-------HSWAVPALGV------------------KMD---AVPGRLNQTAFIAS 187 (230)
T ss_pred ceEEEecCcEEEEEEEeCc----cc-------cceeccccCC------------------ccc---cCCCceEEEEEEeC
Confidence 4578899999999988643 33 3555555431 123 33777888899999
Q ss_pred CceeeEEeecchhhH-hccceEEEEEeC
Q 008799 509 NPGVWFLHCHLEVHT-SWGLKMAFVVDN 535 (553)
Q Consensus 509 npG~w~~HCHil~H~-d~GM~~~~~V~~ 535 (553)
.||.+...|.-+--. ...|-..++|.+
T Consensus 188 ~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 188 RPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CceEEEEEChhhccccccCCcEEEEEEC
Confidence 999999999875433 245555565543
No 112
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=33.42 E-value=73 Score=32.55 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHhhcccccc--------------------cceEEEEEEEEEEEeecccceeeE---EEECCCCCCCeEe
Q 008799 1 MAYLIRAILLATFMFPALVE--------------------SAVRHYNFTVVMTNMTKLCASKSI---VTVNGKFPGPTLH 57 (553)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~~~~~~~~g~~~~~---~~~NG~~pGP~i~ 57 (553)
++.++..+++++..-+.+.. ......+..++.......|+...+ ++=||.-| ++
T Consensus 204 ~~~~~~tl~lV~~g~~~t~~~yP~tIPlQag~~~~i~pl~~~~~~V~~~v~~A~Y~vpgR~l~~~l~VtN~g~~p---v~ 280 (381)
T PF04744_consen 204 IAFLAGTLVLVIGGYAYTNSKYPITIPLQAGLLRPIKPLPVPPNSVKVKVTDATYRVPGRTLTMTLTVTNNGDSP---VR 280 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHCHSSSS------S-BS------SS-SSEEEEEEEEEEESSSSEEEEEEEEEEESSS----BE
T ss_pred hhHHHHHHHHHhhhHhhhhhcCCCccccccccccCcccCCCCCCceEEEEeccEEecCCcEEEEEEEEEcCCCCc---eE
Q ss_pred ecCCCEEEEEEEeCCCCCce-------eeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCC
Q 008799 58 AREDDNVIVRVTNHVKYNVT-------IHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTG 116 (553)
Q Consensus 58 v~~Gd~v~v~l~N~l~~~~~-------iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~ 116 (553)
+.+=.+-.||+.|..-.... +---|+.+++. .||+|||+++.+.++.+
T Consensus 281 LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-----------~pI~PGETrtl~V~a~d 335 (381)
T PF04744_consen 281 LGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-----------SPIAPGETRTLTVEAQD 335 (381)
T ss_dssp EEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES-------------S-B-TT-EEEEEEEEE-
T ss_pred eeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-----------CCcCCCceEEEEEEeeh
No 113
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.88 E-value=1.9e+02 Score=27.90 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=42.7
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.+|+++-.+- .. |.|.| |...-.+..-||.+-.+.+.+++ +|.|...|..++
T Consensus 144 n~lvlP~~~~v~~~itS~D--Vi-------Hsf~v---------p~lg~k~daiPG~~~~~~~~~~~-~G~y~g~Cse~C 204 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD--VL-------HSFAV---------PSLSVKIDAVPGRLNQTSFFIKR-PGVFYGQCSEIC 204 (234)
T ss_pred eEEEEecCcEEEEEEEeCc--hh-------ccccc---------cccCceeEccCCceEeEEEEeCC-CEEEEEEChhhc
Confidence 4588999999999887763 23 44444 33333345567888888888886 799999987554
No 114
>PRK13202 ureB urease subunit beta; Reviewed
Probab=32.75 E-value=1.6e+02 Score=24.34 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=39.8
Q ss_pred EEEEEcC--CEEEEEEEecCCCceEEEEEcCceE--------EEEeeCCCcccceEeeEEEeCCCccEEEEEEeC
Q 008799 207 TLHVESG--KTYLLRIVNAAVNDELFFKIAGHNL--------TVVEVDSSYTKPFKTDTIFIGPGQTTNALLTAD 271 (553)
Q Consensus 207 ~~~v~~G--~~~rlRliN~~~~~~~~~~i~gh~~--------~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~ 271 (553)
.|.+.+| ++.++++.|.|. +.+.+.-|-|=+ .--++=|-.+.=-....+..-||+..+|.+..-
T Consensus 12 ~I~ln~grr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 85 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGD-RPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPL 85 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCC-CceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEc
Confidence 3788888 478999999994 555554443322 222222332221225678888999888877654
No 115
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=32.69 E-value=2.9e+02 Score=24.92 Aligned_cols=61 Identities=10% Similarity=-0.059 Sum_probs=40.2
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.+||++.-+- ..|.|.+. ...-.+..-||..-.+.+.+++ +|.|...|..++
T Consensus 73 n~LvLP~g~~Vr~~lTS~D--VIHSF~VP----------------~lgvK~DavPGr~n~l~~~~~~-~G~y~gqCsElC 133 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATD--VIHSWSVP----------------SLGIKADAIPGRLHKINTFILR-EGVFYGQCSEMC 133 (162)
T ss_pred CCEEEeCCCEEEEEEEeCc--cceeeecc----------------ccCceeeccCCceEEEEEecCC-CeEEEEEcchhc
Confidence 3478899998888775543 33434443 3333344557777777777776 799999998654
No 116
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=32.60 E-value=15 Score=37.73 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred CceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEec
Q 008799 75 NVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHA 125 (553)
Q Consensus 75 ~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~ 125 (553)
...+-|.|+...-. +++..--.-..|+||++.+-.|++ +.||+...
T Consensus 77 g~~V~F~Gi~~~~~--~~~L~~d~F~~L~pG~sve~~fDi---A~~~dLs~ 122 (359)
T PF02102_consen 77 GKEVPFTGIRLRYD--TSGLTEDAFQTLAPGESVEVEFDI---AETHDLSS 122 (359)
T ss_dssp ---------------------------------------------------
T ss_pred CcccccccEEEEEe--cCCCCHHHceecCCCCeEEEEEcc---hheeecCC
Confidence 44566777776544 454333223579999999999976 67776644
No 117
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=32.49 E-value=25 Score=28.87 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=8.9
Q ss_pred CCeE-eecCCCEEEEE
Q 008799 53 GPTL-HAREDDNVIVR 67 (553)
Q Consensus 53 GP~i-~v~~Gd~v~v~ 67 (553)
||.| .+++|..|-..
T Consensus 64 ~p~ifqvrpGsvVS~s 79 (118)
T PF14481_consen 64 GPVIFQVRPGSVVSFS 79 (118)
T ss_dssp EEGGGT--TT-EEEEE
T ss_pred CceEEEEcCCcEEEEe
Confidence 5888 89999987553
No 118
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=32.08 E-value=1.4e+02 Score=24.97 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=25.9
Q ss_pred EEEEEEEecCCCc-eEEEEEcCce-EEEEeeCCCcccceEeeEEEeCCCccEEEEEEeC
Q 008799 215 TYLLRIVNAAVND-ELFFKIAGHN-LTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTAD 271 (553)
Q Consensus 215 ~~rlRliN~~~~~-~~~~~i~gh~-~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~ 271 (553)
.|+++|+|.+... .+.+.+.|.+ +++ . .....+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l--------~-~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAEL--------Q-GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEE--------E-CCCcceEECCCCEEEEEEEEE
Confidence 5899999999766 4556666532 222 0 134678899999776665443
No 119
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=32.07 E-value=90 Score=31.53 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=47.1
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.+||++-..... |.|.| |.....+..-||.+-.+.+.+++ +|.|...|..++
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~~-~G~Y~G~CaEyC 211 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIANE-PGTYDGISASYS 211 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcCC-CEEEEEEChhhc
Confidence 347889999999988766532 34444 66666677778998899999887 799999998765
Q ss_pred c
Q 008799 286 D 286 (553)
Q Consensus 286 ~ 286 (553)
.
T Consensus 212 G 212 (315)
T PRK10525 212 G 212 (315)
T ss_pred C
Confidence 3
No 120
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.20 E-value=2.5e+02 Score=26.98 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeeccc
Q 008799 207 TLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFMD 286 (553)
Q Consensus 207 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~ 286 (553)
.+.+..|+.+|+++--.... |.|.+ |...-.+..-||.+-.+.+.+++ +|.|...|..++.
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi---------Hsf~i---------P~lg~k~daiPG~~~~~~~~~~~-~G~~~g~Cse~CG 201 (230)
T MTH00185 141 RMVVPMESPIRVLITAEDVL---------HSWTV---------PALGVKMDAVPGRLNQATFIISR-PGLYYGQCSEICG 201 (230)
T ss_pred eEEEecCCEEEEEEEcCccc---------ccccc---------cccCceeEecCCceEEEEEEeCC-cEEEEEEchhhcC
Q ss_pred cccccCCccEEEE
Q 008799 287 TIVAVNNVTGIAF 299 (553)
Q Consensus 287 ~~~~~~~~~~~ai 299 (553)
....+-.....++
T Consensus 202 ~~Hs~M~~~v~vv 214 (230)
T MTH00185 202 ANHSFMPIVVEAV 214 (230)
T ss_pred cCcCCCeEEEEEE
No 121
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.86 E-value=59 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=21.5
Q ss_pred EecCCcEEEEEEEe-cCc---eeeEEeecch
Q 008799 494 SVPTAGWTAIRFRA-DNP---GVWFLHCHLE 520 (553)
Q Consensus 494 ~vp~~g~~~irf~a-dnp---G~w~~HCHil 520 (553)
.|+||..+.|.++. .|| |.|.|+|=..
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 47899999999965 566 8999998654
No 122
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=29.21 E-value=56 Score=25.72 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.7
Q ss_pred ceeeEEEECCCCCCCeEeecCCCEEEEE
Q 008799 40 ASKSIVTVNGKFPGPTLHAREDDNVIVR 67 (553)
Q Consensus 40 ~~~~~~~~NG~~pGP~i~v~~Gd~v~v~ 67 (553)
.+...+.+||+.-++--+++.||+|.|.
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 3578899999998999999999999875
No 123
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.20 E-value=1.8e+02 Score=27.87 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=50.3
Q ss_pred eeEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEe
Q 008799 428 TRLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRA 507 (553)
Q Consensus 428 ~~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 507 (553)
.+.+.++.|+.+++.+... +..|.|. |-+-+ ..+|.+ ||-...+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHsf~-------vP~l~------------------~K~Dai---PG~~n~~~~~~ 186 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAA----DVLHSWT-------VPSLG------------------VKIDAV---PGRLNQVGFFI 186 (226)
T ss_pred CceEEEecCCEEEEEEecC----cccccee-------ccccC------------------ccccCC---CCcEEEEEEEc
Confidence 3457899999999998763 4445544 43332 124444 57778889999
Q ss_pred cCceeeEEeecchhhHh-ccceEEEEEeC
Q 008799 508 DNPGVWFLHCHLEVHTS-WGLKMAFVVDN 535 (553)
Q Consensus 508 dnpG~w~~HCHil~H~d-~GM~~~~~V~~ 535 (553)
+.||.+.--|--+-=.. .-|-..++|.+
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 187 NRPGVFYGQCSEICGANHSFMPIVVEAIS 215 (226)
T ss_pred CCCEEEEEEChhhcCcCcCCCeEEEEEeC
Confidence 99999999997664332 23445555543
No 124
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=28.15 E-value=3.6e+02 Score=22.89 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=36.8
Q ss_pred EEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcc-cceEeeEEEeCCCccEEEEEEeCCC
Q 008799 208 LHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYT-KPFKTDTIFIGPGQTTNALLTADKK 273 (553)
Q Consensus 208 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~~~l~pgeR~dv~v~~~~~ 273 (553)
|++.....|+|.+...+ ...|.|+|.. |++.++... .+.....+.|..|+++.|.|...+.
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 55555556999885433 3457788763 344333221 2334456888888888888877653
No 125
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=27.57 E-value=2.5e+02 Score=26.88 Aligned_cols=75 Identities=11% Similarity=0.212 Sum_probs=50.8
Q ss_pred eEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEec
Q 008799 429 RLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRAD 508 (553)
Q Consensus 429 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 508 (553)
+.+.++.|+.|++.+.+. +..|.|.+-+... -+..-||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~----DViHsf~vP~~~~----------------------------k~daiPG~~~~~~~~~~ 187 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAA----DVIHSWTVPSLGV----------------------------KVDAVPGRLNQIGFTIT 187 (228)
T ss_pred ceEEEecCCEEEEEEEeC----CccccccccccCc----------------------------ceecCCCceEEEEEEeC
Confidence 457889999999999874 4455555443211 12233677788899999
Q ss_pred CceeeEEeecchhhHh-ccceEEEEEeC
Q 008799 509 NPGVWFLHCHLEVHTS-WGLKMAFVVDN 535 (553)
Q Consensus 509 npG~w~~HCHil~H~d-~GM~~~~~V~~ 535 (553)
.||.+..-|.-+-... .-|-..++|.+
T Consensus 188 ~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 188 RPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 9999999998765553 44555555543
No 126
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=26.93 E-value=85 Score=21.90 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCCCccee-eEecCCcEEEEEEEecCceeeEEeecchhhHhc
Q 008799 485 VDPVERNT-ISVPTAGWTAIRFRADNPGVWFLHCHLEVHTSW 525 (553)
Q Consensus 485 ~~p~~rDT-v~vp~~g~~~irf~adnpG~w~~HCHil~H~d~ 525 (553)
..|..+-+ |..+.+....++++-..-..+=+||..+.|.+.
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 34444443 335667888888888888899999999999764
No 127
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.91 E-value=2.1e+02 Score=26.38 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=17.7
Q ss_pred CCCCCCCCceEEEEEe-CCCCcce
Q 008799 99 QCPIQPGQSYVYNFTL-TGQRGTL 121 (553)
Q Consensus 99 q~~i~pG~~~~y~~~~-~~~~Gt~ 121 (553)
-..|+||++.++.|.+ +...|.|
T Consensus 80 ~~~i~pg~~vsh~~vv~p~~~G~f 103 (181)
T PF05753_consen 80 WERIPPGENVSHSYVVRPKKSGYF 103 (181)
T ss_pred EEEECCCCeEEEEEEEeeeeeEEE
Confidence 3569999999999988 4446765
No 128
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.29 E-value=3.5e+02 Score=25.89 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred EEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeeccc
Q 008799 207 TLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFMD 286 (553)
Q Consensus 207 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~ 286 (553)
.+.+..|+.+|+++--+-.. |.|.+ |...-.+..-||..-.+.+.+++ ||.|...|..++.
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi---------Hsf~v---------P~lg~K~DavPG~~n~~~~~~~~-~G~y~g~CsE~CG 201 (227)
T MTH00117 141 RMVIPMESPIRILITAEDVL---------HSWAV---------PSLGVKTDAVPGRLNQTSFITTR-PGVFYGQCSEICG 201 (227)
T ss_pred eEEEecCceEEEEEEecchh---------hcccc---------cccCceeEecCCceEEEEEEEcc-cceEEEEeccccc
Q ss_pred cccccCCccEEEE
Q 008799 287 TIVAVNNVTGIAF 299 (553)
Q Consensus 287 ~~~~~~~~~~~ai 299 (553)
....+-.....++
T Consensus 202 ~~Hs~M~~~v~vv 214 (227)
T MTH00117 202 ANHSFMPIVVESV 214 (227)
T ss_pred cCccCCeEEEEEc
No 129
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.87 E-value=3e+02 Score=26.65 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=51.0
Q ss_pred eEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEec
Q 008799 429 RLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRAD 508 (553)
Q Consensus 429 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 508 (553)
+.+.++.|+.|++.+... +..|.|.+-. -+ ..+|.+ ||-...+.|+++
T Consensus 151 n~lvlP~~~~v~~~~tS~----DViHsf~iP~-------lg------------------vK~Dai---PG~~n~~~~~~~ 198 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA----DVLHSFAVPS-------LG------------------LKIDAV---PGRLNQTGFFIK 198 (240)
T ss_pred ceEEEecCCEEEEEEEcC----Ccccceeecc-------cC------------------ceeecC---CCcceeEEEEcC
Confidence 457899999999998763 4556665543 22 123333 566677889999
Q ss_pred CceeeEEeecchhhHh-ccceEEEEEeC
Q 008799 509 NPGVWFLHCHLEVHTS-WGLKMAFVVDN 535 (553)
Q Consensus 509 npG~w~~HCHil~H~d-~GM~~~~~V~~ 535 (553)
.||.|.-.|.-+--.. .-|-..++|.+
T Consensus 199 ~~G~y~g~C~e~CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 199 RPGVFYGQCSEICGANHSFMPIVIEAVS 226 (240)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 9999999998775553 34555555554
No 130
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=25.28 E-value=4.6e+02 Score=22.91 Aligned_cols=72 Identities=19% Similarity=0.400 Sum_probs=41.6
Q ss_pred ceEEECCcCCCCCCCCCCCeEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccc--eEeeEEEeCCCccE
Q 008799 187 DAHTINGHPGPVTNCTSQGFTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKP--FKTDTIFIGPGQTT 264 (553)
Q Consensus 187 ~~~~iNG~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p--~~~d~~~l~pgeR~ 264 (553)
-.|.+||..+ -++..|+-+ +++.-.+ ++++..++.+...-.=+++| +.+.....-||..
T Consensus 56 aTf~i~~ntg-----------~tIs~Gk~V-IeV~y~g------i~ihsethDLCdetsCPVepG~f~~~hsq~LPg~t- 116 (153)
T KOG4680|consen 56 ATFSISGNTG-----------ETISEGKYV-IEVSYGG------IRIHSETHDLCDETSCPVEPGDFLVAHSQVLPGYT- 116 (153)
T ss_pred cEEEEecccc-----------cEeeCCeEE-EEEEEee------EEEeeccccccccccCCcCcCceeeeeeEeccCcC-
Confidence 4778888765 355666533 6554443 66666666665544444554 3334444445542
Q ss_pred EEEEEeCCCCCeeEEEEeecc
Q 008799 265 NALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 265 dv~v~~~~~~g~~~i~~~~~~ 285 (553)
+||+|.+...++.
T Consensus 117 --------PPG~Y~lkm~~~d 129 (153)
T KOG4680|consen 117 --------PPGSYVLKMTAYD 129 (153)
T ss_pred --------CCceEEEEEEeec
Confidence 5788888877653
No 131
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.14 E-value=3.4e+02 Score=26.01 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=0.0
Q ss_pred EEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeeccc
Q 008799 207 TLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFMD 286 (553)
Q Consensus 207 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~ 286 (553)
.+.+..|+.+||++--.-.. |.|.| |...-.+..-||..-.+.+.+++ +|.|...|..++.
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi---------Hsf~v---------P~lg~k~da~PG~~n~~~~~~~~-~G~~~g~C~e~CG 201 (228)
T MTH00076 141 RMVVPMESPIRMLITAEDVL---------HSWAV---------PSLGIKTDAIPGRLNQTSFIASR-PGVYYGQCSEICG 201 (228)
T ss_pred eEEEecCCEEEEEEEecccc---------ccccc---------cccCceEEccCCcceeEEEEeCC-cEEEEEEChhhcC
Q ss_pred cccccCCccEEEE
Q 008799 287 TIVAVNNVTGIAF 299 (553)
Q Consensus 287 ~~~~~~~~~~~ai 299 (553)
....+-.....++
T Consensus 202 ~~Hs~M~~~v~vv 214 (228)
T MTH00076 202 ANHSFMPIVVEAT 214 (228)
T ss_pred ccccCCceEEEEe
No 132
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=25.07 E-value=2.9e+02 Score=23.36 Aligned_cols=72 Identities=21% Similarity=0.146 Sum_probs=40.2
Q ss_pred EEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCccc----ceEeeEEEeCCCccEEEEEEeCC--CCCeeEEEEe
Q 008799 209 HVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTK----PFKTDTIFIGPGQTTNALLTADK--KIGKYLITIS 282 (553)
Q Consensus 209 ~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~----p~~~d~~~l~pgeR~dv~v~~~~--~~g~~~i~~~ 282 (553)
.+..|+.+++|+-=........+. -.+.+...+|..+- ......+....++++.+.++++. .+|.|.+...
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 467788888877666544433333 23556667776541 11223455554888888888876 4799999876
Q ss_pred e
Q 008799 283 P 283 (553)
Q Consensus 283 ~ 283 (553)
-
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 3
No 133
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=25.03 E-value=2.6e+02 Score=23.81 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=31.9
Q ss_pred eEeecCCCEEEEEEEeCCCC-----CceeeeC--CCcccCCC-CCCCCCCc-cCCCCCCCCceEEEEEe
Q 008799 55 TLHAREDDNVIVRVTNHVKY-----NVTIHWH--GVRQLRTG-WYDGPAYI-TQCPIQPGQSYVYNFTL 114 (553)
Q Consensus 55 ~i~v~~Gd~v~v~l~N~l~~-----~~~iH~H--G~~~~~~~-~~DGv~~~-tq~~i~pG~~~~y~~~~ 114 (553)
.=.+.+|+.+.+.+.=...+ .+.+|+. |+..+... ..|+=-.. ..|||.+|+.++|.+.+
T Consensus 23 PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 23 PCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEee
Confidence 34566777766665522221 2223332 44332111 13441111 35999999999999976
No 134
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=24.65 E-value=2.5e+02 Score=23.06 Aligned_cols=64 Identities=14% Similarity=0.078 Sum_probs=39.6
Q ss_pred EEEEEcC-CEEEEEEEecCCCceEEEEEcCce--------EEEEeeCCCcccceEeeEEEeCCCccEEEEEEeC
Q 008799 207 TLHVESG-KTYLLRIVNAAVNDELFFKIAGHN--------LTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTAD 271 (553)
Q Consensus 207 ~~~v~~G-~~~rlRliN~~~~~~~~~~i~gh~--------~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~ 271 (553)
.|++.+| ++..+.+.|.|. +.+.+.-|-|= |.--++=|-.+.=-....+..-|||..+|.+..-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 84 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGD-RPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAI 84 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCC-cceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEc
Confidence 3677777 677899999994 55555444332 2222233333321225678899999988877654
No 135
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=24.57 E-value=1.2e+02 Score=26.12 Aligned_cols=12 Identities=33% Similarity=0.758 Sum_probs=9.2
Q ss_pred CCCCCCCceEEE
Q 008799 100 CPIQPGQSYVYN 111 (553)
Q Consensus 100 ~~i~pG~~~~y~ 111 (553)
..|.||++|.|.
T Consensus 74 P~L~PGe~F~Y~ 85 (127)
T PRK05461 74 PVLAPGESFEYT 85 (127)
T ss_pred ceECCCCCeEEe
Confidence 557999987774
No 136
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=23.93 E-value=56 Score=23.68 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=18.9
Q ss_pred EEEECCCCC-CCeEeecCCCEEEE
Q 008799 44 IVTVNGKFP-GPTLHAREDDNVIV 66 (553)
Q Consensus 44 ~~~~NG~~p-GP~i~v~~Gd~v~v 66 (553)
.+.+||+.- -|..++.+||.|.|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 456799865 68999999999976
No 137
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.54 E-value=4.4e+02 Score=25.22 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=42.3
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeCCCCCeeEEEEeecc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTADKKIGKYLITISPFM 285 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 285 (553)
..+.+..|+.+|+++-.+- .. |.|.| |...-....-||..-.+.+.+++ +|.|...|..++
T Consensus 140 n~l~lP~~~~v~~~~tS~D--Vi-------Hsf~v---------p~l~~k~davPG~~~~~~~~~~~-~G~y~g~Cse~C 200 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD--VI-------HSWTV---------PSLGVKVDAVPGRLNQLNFLINR-PGLFFGQCSEIC 200 (227)
T ss_pred ceEEEecCCEEEEEEEcCc--hh-------hheec---------cccCCeeecCCCceEEEEEEEcC-ceEEEEEeechh
Confidence 4588999998888775443 33 34443 33333345558888888888886 799999998654
No 138
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=23.52 E-value=1.8e+02 Score=21.57 Aligned_cols=46 Identities=13% Similarity=0.339 Sum_probs=26.3
Q ss_pred EEEEcCCEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceEeeEEEeCCCccEE
Q 008799 208 LHVESGKTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFKTDTIFIGPGQTTN 265 (553)
Q Consensus 208 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pgeR~d 265 (553)
+++.+|+..+||.-... .+.+.+-.+++.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 56778888888854433 2666666666653 442 2334455555544
No 139
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=23.44 E-value=1.6e+02 Score=29.86 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=49.0
Q ss_pred EEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEecC
Q 008799 430 LYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRADN 509 (553)
Q Consensus 430 ~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 509 (553)
-+.++.|..|++.+...+ ..| +|+|-+-+. ..|.+ ||-...+.|.++.
T Consensus 152 eL~iP~g~pV~f~lTS~D----ViH-------SF~IP~Lg~------------------K~dam---PG~~n~l~~~a~~ 199 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNS----VMN-------SFFIPRLGS------------------QIYAM---AGMQTRLHLIANE 199 (315)
T ss_pred cEEEecCCEEEEEEEEch----hhh-------hhhhhhhCC------------------eeecC---CCceeEEEEEcCC
Confidence 367899999999998643 333 455544431 13333 6777889999999
Q ss_pred ceeeEEeecchhhH-hccceEEEEEe
Q 008799 510 PGVWFLHCHLEVHT-SWGLKMAFVVD 534 (553)
Q Consensus 510 pG~w~~HCHil~H~-d~GM~~~~~V~ 534 (553)
||.|.-.|-..-=. ...|...+.|.
T Consensus 200 ~G~Y~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 200 PGTYDGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred CEEEEEEChhhcCccccCCeEEEEEE
Confidence 99999999865433 24565555554
No 140
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=23.09 E-value=5.3e+02 Score=22.76 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=43.6
Q ss_pred CEEEEEEEecCCCceEEEEEcCceEEEEeeCCCcccceE-------eeEEEeCCCccE-EEEEEeCCCCCeeEEEE
Q 008799 214 KTYLLRIVNAAVNDELFFKIAGHNLTVVEVDSSYTKPFK-------TDTIFIGPGQTT-NALLTADKKIGKYLITI 281 (553)
Q Consensus 214 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~-------~d~~~l~pgeR~-dv~v~~~~~~g~~~i~~ 281 (553)
.+|.|-+-|.|... +.++...++|+ +||..+.|.. .+.+.|.|||-- ++.+.-.- .|.-.+..
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~l-SGyhri~V 140 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEAL-SGYHRIVV 140 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCC-CcceEEEE
Confidence 46889999999655 55777888886 7998876532 367789999966 66665543 25544444
No 141
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=22.57 E-value=4.8e+02 Score=29.59 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=41.3
Q ss_pred CCCeEeecC---CCEEEEEEEeCCCCCceeeeCCCcccCCCCCCCCCCccCCCCCCCCceEEEEEeCCCCcceEEec
Q 008799 52 PGPTLHARE---DDNVIVRVTNHVKYNVTIHWHGVRQLRTGWYDGPAYITQCPIQPGQSYVYNFTLTGQRGTLLWHA 125 (553)
Q Consensus 52 pGP~i~v~~---Gd~v~v~l~N~l~~~~~iH~HG~~~~~~~~~DGv~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~ 125 (553)
+.|.++++. ...|+|+|.|......++|..-... .++.| .+..|.+|++.+..|.+ ...+ -||--
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y-----~~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDL 659 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAY-----GGAGP--RTVTVAPGQRVELHWDL-SASG-GWYDF 659 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCC-----CCCCC--EEEEECCCCEEEEEEec-cCCC-CceEE
Confidence 346666644 4469999999998888887753221 11112 12458899999988876 3222 66653
No 142
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=22.42 E-value=4.4e+02 Score=25.36 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=30.3
Q ss_pred eEEEEEcCCEEEEEEEecCCCceEE-EEEcCceEEEEeeCCCccc
Q 008799 206 FTLHVESGKTYLLRIVNAAVNDELF-FKIAGHNLTVVEVDSSYTK 249 (553)
Q Consensus 206 ~~~~v~~G~~~rlRliN~~~~~~~~-~~i~gh~~~via~DG~~~~ 249 (553)
..+-+++| +|.||+|.-+-...-. +.+-+.-++++|+|+.+.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNIDNGEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEeCCceEEEEcCCceeE
Confidence 55889998 5999999876333221 2333566889999999864
No 143
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=22.06 E-value=2.6e+02 Score=26.79 Aligned_cols=18 Identities=6% Similarity=0.313 Sum_probs=14.5
Q ss_pred CeEeecCCCEEEEEEEeC
Q 008799 54 PTLHAREDDNVIVRVTNH 71 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N~ 71 (553)
|..|+.+|+.-.||+...
T Consensus 75 PlfRl~p~~~~~lRI~~~ 92 (226)
T PRK15218 75 PVIRVAANSGQQLKIKKL 92 (226)
T ss_pred CeEEECCCCceEEEEEEC
Confidence 889999988888887753
No 144
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=21.88 E-value=3.9e+02 Score=20.78 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=11.2
Q ss_pred EEcCCEEEEEEEecC
Q 008799 210 VESGKTYLLRIVNAA 224 (553)
Q Consensus 210 v~~G~~~rlRliN~~ 224 (553)
.+.||+++|++-..-
T Consensus 3 ~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 3 YRVGERVRFRVTSNR 17 (83)
T ss_pred ccCCCEEEEEEEeCC
Confidence 467888888887744
No 145
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.54 E-value=3.8e+02 Score=25.67 Aligned_cols=75 Identities=8% Similarity=0.192 Sum_probs=50.0
Q ss_pred eEEEecCCCEEEEEEEcCCCCCCCCCCeeecCCceEEEeeCCCCCCCCCCCCCCCCCCCCcceeeEecCCcEEEEEEEec
Q 008799 429 RLYRLAYNSTVQLVLQGTTVIAPENHPTHLHGFNFFAVGKGSGNFDPNKDPQKFNLVDPVERNTISVPTAGWTAIRFRAD 508 (553)
Q Consensus 429 ~~~~~~~g~~v~~~i~n~~~~~~~~HP~HlHG~~f~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 508 (553)
+.+.++.|+.|++.+... +..| .|+|-+-| ...| .-||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~----DViH-------sf~ip~lg------------------~k~d---aiPG~~~~~~~~~~ 187 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSE----DVLH-------SWAVPSLG------------------LKTD---AIPGRLNQTTLMST 187 (227)
T ss_pred ceEEecCCCEEEEEEEEC----cccc-------cccccccc------------------ccee---cCCCceEEEEEecC
Confidence 457889999999998864 3433 44444332 1123 33677788899999
Q ss_pred CceeeEEeecchhhHh-ccceEEEEEeC
Q 008799 509 NPGVWFLHCHLEVHTS-WGLKMAFVVDN 535 (553)
Q Consensus 509 npG~w~~HCHil~H~d-~GM~~~~~V~~ 535 (553)
.||.+..-|.-+-... .-|-..++|.+
T Consensus 188 ~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 188 RPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred CcEEEEEECccccCcCcCCceEEEEEeC
Confidence 9999999998765443 34555555543
No 146
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=21.47 E-value=59 Score=17.62 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=5.4
Q ss_pred HHHHHHHHhhcc
Q 008799 5 IRAILLATFMFP 16 (553)
Q Consensus 5 ~~~~~~~~~~~~ 16 (553)
+++++|++.+++
T Consensus 6 IIlvvLLliSf~ 17 (19)
T PF13956_consen 6 IILVVLLLISFP 17 (19)
T ss_pred HHHHHHHhcccc
Confidence 344444444444
No 147
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=21.26 E-value=2.9e+02 Score=22.72 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=38.4
Q ss_pred EEEEEcC-CEEEEEEEecCCCceEEEEEcCceEE--------EEeeCCCcccceEeeEEEeCCCccEEEEEEeC
Q 008799 207 TLHVESG-KTYLLRIVNAAVNDELFFKIAGHNLT--------VVEVDSSYTKPFKTDTIFIGPGQTTNALLTAD 271 (553)
Q Consensus 207 ~~~v~~G-~~~rlRliN~~~~~~~~~~i~gh~~~--------via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~ 271 (553)
.+.+.+| ++..+++.|.|. +.+.+.-|-|=++ --++=|-.+.=-....+..-|||..+|.+..-
T Consensus 12 ~I~lN~gr~~~~l~V~NtGD-RpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 84 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGD-RPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPI 84 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCC-cceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEc
Confidence 3677777 577899999994 5555544433222 22222322221124678888888888877654
No 148
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=21.15 E-value=3.4e+02 Score=28.73 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=26.3
Q ss_pred eEecCCcEEEEEEEecCceeeEEe----ecchhhHhccce
Q 008799 493 ISVPTAGWTAIRFRADNPGVWFLH----CHLEVHTSWGLK 528 (553)
Q Consensus 493 v~vp~~g~~~irf~adnpG~w~~H----CHil~H~d~GM~ 528 (553)
+.+-|.....+-|.++.||.|++- ||.+.-|..|=|
T Consensus 594 ~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rm 633 (637)
T COG4263 594 MEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRM 633 (637)
T ss_pred EEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccce
Confidence 456677888999999999999865 466655555544
No 149
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=21.04 E-value=4.4e+02 Score=21.06 Aligned_cols=59 Identities=24% Similarity=0.424 Sum_probs=35.2
Q ss_pred EEEcCCEE--EEEEEecCCCceEEEEEc--C---ceEEEEeeCCCcccceEeeEEEeCCCccEEEEEEeC-C-CCCeeEE
Q 008799 209 HVESGKTY--LLRIVNAAVNDELFFKIA--G---HNLTVVEVDSSYTKPFKTDTIFIGPGQTTNALLTAD-K-KIGKYLI 279 (553)
Q Consensus 209 ~v~~G~~~--rlRliN~~~~~~~~~~i~--g---h~~~via~DG~~~~p~~~d~~~l~pgeR~dv~v~~~-~-~~g~~~i 279 (553)
.+..|++| .+.|.|.|... ..|++. . ..|.+ .| ..-.|+||+..++.|.+. . ..|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 45556665 48999998654 335443 2 11221 22 234699999999988887 3 2365543
No 150
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.87 E-value=5.2e+02 Score=24.74 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHhhcccccccceEEEEEEEEEEEeecccceeeEEEECCC-----------------------CCCCeEe
Q 008799 1 MAYLIRAILLATFMFPALVESAVRHYNFTVVMTNMTKLCASKSIVTVNGK-----------------------FPGPTLH 57 (553)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~-----------------------~pGP~i~ 57 (553)
|++.++++.++++.++.++. ..+.+.-++....-+-....++.-|.. .| |.++
T Consensus 4 ~~~~~~~~~~l~~~~~~~a~---a~v~l~~tRvi~~~~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtP-Pl~r 79 (230)
T PRK09918 4 NLFFLFTALVLLSSSSAVHA---AGMVPETSVVIVEESDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTP-PVAR 79 (230)
T ss_pred hhHHHHHHHHHHHhhhHhhE---eeEEEccEEEEEECCCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcC-CeEE
Q ss_pred ecCCCEEEEEEE
Q 008799 58 AREDDNVIVRVT 69 (553)
Q Consensus 58 v~~Gd~v~v~l~ 69 (553)
+.+|+.-.||+.
T Consensus 80 l~pg~~q~vRii 91 (230)
T PRK09918 80 VEPGQSQQVRFI 91 (230)
T ss_pred ECCCCceEEEEE
No 151
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=20.52 E-value=3.4e+02 Score=26.03 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=13.5
Q ss_pred CeEeecCCCEEEEEEEe
Q 008799 54 PTLHAREDDNVIVRVTN 70 (553)
Q Consensus 54 P~i~v~~Gd~v~v~l~N 70 (553)
|..|+.+|+.-.||+.-
T Consensus 75 Plfrl~p~~~q~lRI~~ 91 (229)
T PRK15211 75 PFFKVRPKEKQIIRIMK 91 (229)
T ss_pred CeEEECCCCceEEEEEE
Confidence 78888888887777654
No 152
>PRK07440 hypothetical protein; Provisional
Probab=20.43 E-value=99 Score=23.46 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.4
Q ss_pred eeEEEECCCCCC----CeEeecCCCEEEEE
Q 008799 42 KSIVTVNGKFPG----PTLHAREDDNVIVR 67 (553)
Q Consensus 42 ~~~~~~NG~~pG----P~i~v~~Gd~v~v~ 67 (553)
.-+..+||++-- +...+++||+|+|-
T Consensus 35 ~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 35 LVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 456788999865 78999999999874
Done!