Query 008800
Match_columns 553
No_of_seqs 349 out of 1537
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 16:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1648 Uncharacterized conser 100.0 1.8E-49 4E-54 406.4 9.8 450 41-552 250-729 (813)
2 KOG2224 Uncharacterized conser 100.0 1.1E-41 2.4E-46 344.7 22.1 224 327-552 403-658 (781)
3 PF12068 DUF3548: Domain of un 100.0 1.7E-38 3.6E-43 306.1 14.6 148 42-189 3-200 (213)
4 smart00164 TBC Domain in Tre-2 100.0 2.9E-35 6.4E-40 284.5 14.8 178 356-552 2-181 (199)
5 KOG2197 Ypt/Rab-specific GTPas 100.0 1.4E-34 3.1E-39 312.0 5.6 230 323-553 142-371 (488)
6 KOG2058 Ypt/Rab GTPase activat 100.0 5.4E-33 1.2E-37 291.6 14.5 199 331-551 123-330 (436)
7 KOG4567 GTPase-activating prot 100.0 1.3E-32 2.9E-37 270.7 11.5 218 333-553 11-293 (370)
8 COG5210 GTPase-activating prot 100.0 1.4E-30 2.9E-35 285.4 14.2 209 327-553 179-392 (496)
9 KOG1092 Ypt/Rab-specific GTPas 100.0 5.8E-30 1.3E-34 260.7 8.0 202 343-553 174-400 (484)
10 KOG2223 Uncharacterized conser 99.9 3.9E-27 8.5E-32 239.9 13.0 204 338-552 282-488 (586)
11 PF00566 RabGAP-TBC: Rab-GTPas 99.9 3.1E-27 6.8E-32 230.0 11.9 177 361-552 1-178 (214)
12 KOG2222 Uncharacterized conser 99.9 8.3E-24 1.8E-28 217.2 11.0 190 342-552 154-345 (848)
13 KOG4436 Predicted GTPase activ 99.8 6.6E-21 1.4E-25 206.7 13.8 201 332-552 550-755 (948)
14 KOG4347 GTPase-activating prot 99.8 5.9E-21 1.3E-25 204.4 12.4 194 331-549 173-370 (671)
15 KOG2221 PDZ-domain interacting 99.8 2.4E-21 5.2E-26 182.7 0.2 190 331-544 75-267 (267)
16 KOG1093 Predicted protein kina 99.8 1.1E-18 2.3E-23 184.1 10.6 182 342-552 340-524 (725)
17 KOG1102 Rab6 GTPase activator 99.7 4.2E-18 9E-23 181.1 9.1 183 346-552 134-317 (397)
18 KOG1091 Ypt/Rab-specific GTPas 99.7 6.2E-18 1.4E-22 178.4 7.9 188 361-552 27-292 (625)
19 KOG2595 Predicted GTPase activ 99.6 2.4E-16 5.2E-21 157.8 6.9 179 345-552 46-230 (395)
20 KOG4436 Predicted GTPase activ 99.2 3.9E-11 8.4E-16 131.5 9.1 196 332-552 164-369 (948)
21 KOG3636 Uncharacterized conser 98.3 1.1E-06 2.5E-11 91.5 5.9 125 422-550 69-195 (669)
22 KOG2197 Ypt/Rab-specific GTPas 97.6 5.7E-05 1.2E-09 82.7 4.5 83 323-405 42-124 (488)
23 KOG2224 Uncharacterized conser 93.9 0.018 3.8E-07 60.5 0.2 34 462-495 566-599 (781)
24 KOG2801 Probable Rab-GAPs [Int 92.7 0.51 1.1E-05 47.6 8.3 164 346-532 31-201 (559)
25 PF08567 TFIIH_BTF_p62_N: TFII 66.6 36 0.00079 27.9 7.6 65 64-142 12-78 (79)
26 PF14472 DUF4429: Domain of un 59.7 9.2 0.0002 32.4 3.0 31 104-134 27-58 (94)
27 PF14961 BROMI: Broad-minded p 49.2 61 0.0013 39.4 8.3 104 446-550 1084-1206(1296)
28 COG1507 Uncharacterized conser 41.1 53 0.0012 30.2 4.9 31 110-141 20-53 (167)
29 PF04683 Proteasom_Rpn13: Prot 33.8 2.3E+02 0.005 23.6 7.3 56 62-127 13-69 (85)
30 PF07024 ImpE: ImpE protein; 25.7 67 0.0014 28.8 2.9 30 106-135 30-63 (123)
31 PF14844 PH_BEACH: PH domain a 24.2 76 0.0016 27.1 3.0 93 45-146 2-97 (106)
32 PF08109 Antimicrobial14: Lact 23.2 51 0.0011 21.2 1.2 15 462-476 3-17 (31)
33 PF11605 Vps36_ESCRT-II: Vacuo 21.8 4.8E+02 0.01 21.9 7.3 71 44-130 15-87 (89)
34 PRK03636 hypothetical protein; 20.5 91 0.002 29.9 2.9 62 111-174 40-101 (179)
No 1
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=100.00 E-value=1.8e-49 Score=406.38 Aligned_cols=450 Identities=22% Similarity=0.320 Sum_probs=340.8
Q ss_pred CCcEEEEeeCCeEEccCCcccccCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeee--eeCCCeeEEEEeC
Q 008800 41 EGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRRHT 118 (553)
Q Consensus 41 ~~~~llf~K~~V~vhpt~~~~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~--v~ls~i~si~~~~ 118 (553)
++++|||+||+|.|+|.. +++.+||||+|+|....++|+|+||+.|+++...++.+++.||.++ |++.+|.+||||+
T Consensus 250 sr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHcHQ 328 (813)
T KOG1648|consen 250 SRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHCHQ 328 (813)
T ss_pred chhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEeec
Confidence 678999999999999976 8999999999999999999999999999999988899999999876 9999999999999
Q ss_pred CCCCceEEEEEeCCCCcCCceeeccCCH-HHHHHHHHhcccccccCCCCceEEEeCC---chhhhhhhcccCCCccc-cc
Q 008800 119 PAFGWQYIIVVLSSGLAFPPLYFYTGGV-REFLATIKQHVLLVRSVEDANVFLVNDF---DNRLQRTLSSLELPRAV-SI 193 (553)
Q Consensus 119 p~~g~~~~il~~~dG~~~P~L~F~~GG~-~~fl~~L~~~~~l~rS~~d~~~~lv~~~---~~~l~~~~s~~~~~~~~-~~ 193 (553)
......++++|.+||++.|||+|+.||+ ..||+||++ +.|+++++||++|...+- -++|++. |+....... .-
T Consensus 329 q~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScLEn-GLlP~gqLdPPLW~q~gKgKvfPkLRKR-S~~~s~~~~~~~ 406 (813)
T KOG1648|consen 329 QDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCLEN-GLLPLGQLDPPLWVQTGKGKVFPKLRKR-STAVSNPAMEMG 406 (813)
T ss_pred ccCCCCeEEEEecccccCCCccCCCCchhHHHHHHHHh-cCCcccccCCccccccCCcccchhhhhc-CcccCCchhhcC
Confidence 9877789999999999999999999999 799999998 999999999999999772 3677553 222111100 11
Q ss_pred CCCCCCCcccC-CCCCcccccccCC---------------CCCCCCCcccccccc---ccCcCCChhhhhhHHHHhhHHH
Q 008800 194 ASGSSTPVSIG-DSPTNVNLERTNG---------------GLGHDSHSISQFHGR---QKQKAQDPARDISIQVLEKFSL 254 (553)
Q Consensus 194 ~~~~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~s~ 254 (553)
...+++||++. ++++..+....|- ...+.+.+|++..+. ....++.++ .+.+.++
T Consensus 407 ~~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~-r~pl~ll----- 480 (813)
T KOG1648|consen 407 TGRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF-RLPLGLL----- 480 (813)
T ss_pred cccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc-cchHHHH-----
Confidence 23456788765 4444444333221 112233445544332 122334444 3667787
Q ss_pred HHHHHHHHHhhhhhccCCCCCccchhccccccccccCCCCCccccccc---c-CCCCCCCcccccccccccCCCCCCCCC
Q 008800 255 VTKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIV---N-EIPVAPDPVEFDKLTLVWGKPRQPPLG 330 (553)
Q Consensus 255 ~t~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~-~~~~~~~~~e~~~~~~~~~~~r~~plt 330 (553)
|.+|.+|+++++| |||.+|+|+ .++|++++. + .+-.|++|.+. ..+||
T Consensus 481 C~sMk~QI~sRAF-----YGWLaycRH------------LsTvRTHLsaLV~h~~~~pD~pcda-----------~~glt 532 (813)
T KOG1648|consen 481 CQSMKNQIMSRAF-----YGWLAYCRH------------LSTVRTHLSALVDHKTLIPDDPCDA-----------SAGLT 532 (813)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHH------------HHHHHHHHHHHhcccccCCCCCCCc-----------ccccc
Confidence 9999999999999 999999664 555666652 1 12234444322 56899
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHH
Q 008800 331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 410 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~ 410 (553)
++-|+.+..+. .+..-++.+..++|++....|+.+|+.+++.+...+...+.+.........|+...-.|.
T Consensus 533 ~~~W~qy~~d~--t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~------- 603 (813)
T KOG1648|consen 533 EKFWKQYRADP--TIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF------- 603 (813)
T ss_pred HHHHHHHhcCC--chHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH-------
Confidence 99999998542 333334455566999999999999999999988887766655555566677876555443
Q ss_pred hhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHHHH
Q 008800 411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFV 490 (553)
Q Consensus 411 ~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~ 490 (553)
+-..++|++|+.|++++..+|...++ ++. +++..+|...|-+-||.|||+||.+|++..++||..+--||.
T Consensus 604 ------~~~~~~~~kd~e~~~~~~~~fs~~~~--les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s 674 (813)
T KOG1648|consen 604 ------RANLHRIDKDVERCDRNLMFFSNKDN--LES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFS 674 (813)
T ss_pred ------hhheeeecchhhhCcchheeecCCcc--hhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCc
Confidence 33457999999999999999997554 466 899999999999999999999999999999999988888999
Q ss_pred HHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 491 ALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 491 ~Lm~~~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
-+|-+-...|.. .+||...+-.++ +++..+|-... +... .-..|+||+.-|+||+
T Consensus 675 ~~~~~q~~~~~q-~~~~~~~l~~~r-~~~v~~~l~s~-id~~----qa~~f~~~~~~~~~~~ 729 (813)
T KOG1648|consen 675 LLMLRQRGKFPQ-RPGMSKCLLNLR-LIQVVDPLISD-IDYA----QALSFRWFLLDFKREL 729 (813)
T ss_pred HHHHHhcccCCC-CCCccccccccc-chhhhcchhcc-hhhh----hhcceeeeccCccccc
Confidence 888777666643 457777776666 88888883332 2211 1334899999999986
No 2
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-41 Score=344.70 Aligned_cols=224 Identities=41% Similarity=0.805 Sum_probs=195.0
Q ss_pred CCCCHHHHHH-hhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhh-h
Q 008800 327 PPLGSEEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ-S 404 (553)
Q Consensus 327 ~plt~~~W~~-~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~-~ 404 (553)
+.++..-|.. .++..|.+-+.-+||+.||.|||..++|++||+|||..|...+|.++|+.+...++++|+++.+.-. +
T Consensus 403 kki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlys 482 (781)
T KOG2224|consen 403 KKIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYS 482 (781)
T ss_pred hhhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667766 6677788888889999999999999999999999999999999999999999999999998865443 7
Q ss_pred CChHHHhhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHH
Q 008800 405 ISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 484 (553)
Q Consensus 405 ~~~~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~ 484 (553)
+++++...| |+...-.++|||.||++++++|.+++|||.+.++|||..|+.|||.+||.|||+|++||+|.-.++|.+
T Consensus 483 mspeeh~~f--wknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnese 560 (781)
T KOG2224|consen 483 MSPEEHIAF--WKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESE 560 (781)
T ss_pred CCHHHHHHH--HhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccc
Confidence 777776666 666667889999999999999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHHhcc------------------------C--C--CCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCC-
Q 008800 485 SFWCFVALMERLGP------------------------N--F--NRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCL- 535 (553)
Q Consensus 485 AFw~f~~Lm~~~~~------------------------~--F--~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~- 535 (553)
+||||++||..|.+ | | .+....|..++.-|++||+.+.|.+|+||++++-+
T Consensus 561 tfwcfvglmqgmsdlvapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~ 640 (781)
T KOG2224|consen 561 TFWCFVGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDG 640 (781)
T ss_pred hhhhhhhhhccchhhhhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcch
Confidence 99999999885421 1 1 23345788899999999999999999999998643
Q ss_pred -cchhhHHHHHHhccccc
Q 008800 536 -NYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 536 -~~~f~~rWfltlFkREf 552 (553)
.++||-||++.+|||||
T Consensus 641 lellfchrwlllcfkref 658 (781)
T KOG2224|consen 641 LELLFCHRWLLLCFKREF 658 (781)
T ss_pred hhHHHHHHHHHHHhhhcc
Confidence 46899999999999998
No 3
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=100.00 E-value=1.7e-38 Score=306.07 Aligned_cols=148 Identities=31% Similarity=0.653 Sum_probs=129.1
Q ss_pred CcEEEEeeCCeEEccCCcc----cccCCceEEEEeeCCceeEEeeecCCCCC-Cc-----------c-------------
Q 008800 42 GAELVYLKDNVTIHPTQFA----SERISGRLKLIKQGSSLFMTWIPYKGQNS-NT-----------R------------- 92 (553)
Q Consensus 42 ~~~llf~K~~V~vhpt~~~----~~~I~G~L~l~~~~~~~~l~W~P~~~~~~-~~-----------~------------- 92 (553)
.++|||+|+||||||+++. ++||||||+|++++++++|+|+|.++..+ .. .
T Consensus 3 ~~kllfeKsgVyIHps~~~~~~~d~~IpGfL~Ivek~~~~~l~w~P~e~~~d~s~~l~s~~d~ss~~~~~~~~~~~~~e~ 82 (213)
T PF12068_consen 3 SVKLLFEKSGVYIHPSASKHSDQDDNIPGFLRIVEKDSEVLLEWSPSEDSSDASQVLYSWKDSSSVVESDETDFDSGYEP 82 (213)
T ss_pred cceEEEEeCCEEEcCCccccCcccccCCeEEEEEEeCCCcccccCCcccccCcchheecccCccccccccccccCCCcCC
Confidence 5799999999999999988 79999999999999999999999887411 10 0
Q ss_pred ----cc----------------ccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCceeeccCCHHHHHHH
Q 008800 93 ----LS----------------EKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLAT 152 (553)
Q Consensus 93 ----~~----------------~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~il~~~dG~~~P~L~F~~GG~~~fl~~ 152 (553)
.+ ..+....++|+|||+|||||++++|++|||||+|++|||+.+||||||+||+++||++
T Consensus 83 dw~~vnt~~~~~~~~s~~~~s~~~~~~~~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG~~~p~L~Fh~gg~~~fl~~ 162 (213)
T PF12068_consen 83 DWAVVNTVSKKKRLHSSSPASSPSSSRSSYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDGTSLPPLHFHDGGSKEFLKS 162 (213)
T ss_pred CcccccCCCCccccCCCCCCCCCcCCCcceEEEEEhhheeeEEecCCCCCceEEEEEecCCCccCceEEecCCHHHHHHH
Confidence 00 0001122369999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccCCCCceEEEeCCc-hhhhhhhcccCCCc
Q 008800 153 IKQHVLLVRSVEDANVFLVNDFD-NRLQRTLSSLELPR 189 (553)
Q Consensus 153 L~~~~~l~rS~~d~~~~lv~~~~-~~l~~~~s~~~~~~ 189 (553)
|++|+.|.||+.|+++|||++.. ++|+++|+.+++.+
T Consensus 163 L~~~v~l~~S~~D~~~~lv~~~~s~aL~~S~~~L~lf~ 200 (213)
T PF12068_consen 163 LQRYVTLARSPRDSNLYLVNDHNSEALSQSFSELQLFD 200 (213)
T ss_pred HHhhEEEeecCCCCcEEEEECCCchHHHHHHHHhhccc
Confidence 99999999999999999999976 89999999987763
No 4
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=2.9e-35 Score=284.52 Aligned_cols=178 Identities=35% Similarity=0.633 Sum_probs=157.7
Q ss_pred hCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHhhhhhhhhhccccccccccCCCCCC
Q 008800 356 YGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVT 435 (553)
Q Consensus 356 ~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~IekDV~RT~~~~~ 435 (553)
++|||+.+|+.||+.++|+.+...+ ..+..|+++++++...... ...+|++||.||+|+++
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~~~~----------~~~~I~~Dv~Rt~~~~~ 62 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPKDKS----------IVHQIEKDLRRTFPEHS 62 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCCChh----------hHHHHhcccCCCCCCch
Confidence 7899999999999999999764332 1367888888775432211 23589999999999999
Q ss_pred CCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHHHHHHHHHhccC-CCCChHHHHHHHHHH
Q 008800 436 FFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN-FNRDQNGMHSQLFAL 514 (553)
Q Consensus 436 ~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~~~-F~~~~~gm~~~l~~l 514 (553)
+|+...+++++.|+|||.+|+.+||++||||||++|||+||+++.+|++|||||+++|+++... |..++.++...+..+
T Consensus 63 ~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 142 (199)
T smart00164 63 FFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQL 142 (199)
T ss_pred hhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHH
Confidence 9998777889999999999999999999999999999999999988999999999999998876 556777999999999
Q ss_pred HHHHHHHcHHHHHHHHH-CCCCcchhhHHHHHHhccccc
Q 008800 515 SKLVELLDNPLHNYFKQ-NDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 515 ~~LLq~~dP~L~~hL~~-~~i~~~~f~~rWfltlFkREf 552 (553)
+.+|+..+|+||+||++ .++.+.+|+++||+++|+|+|
T Consensus 143 ~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~ 181 (199)
T smart00164 143 DRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFAREL 181 (199)
T ss_pred HHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhC
Confidence 99999999999999996 999999999999999999987
No 5
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=312.03 Aligned_cols=230 Identities=51% Similarity=0.865 Sum_probs=212.4
Q ss_pred CCCCCCCCHHHHHHhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHh
Q 008800 323 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 402 (553)
Q Consensus 323 ~~r~~plt~~~W~~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~ 402 (553)
.++.+.++.++|......+|++......+.+++++|+-+.+|+++|++++++++|+.+..+|...... ..+|...+.+|
T Consensus 142 ~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW 220 (488)
T KOG2197|consen 142 DNRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQW 220 (488)
T ss_pred cCCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhh
Confidence 35566689999999998899887666666689999998899999999999999999999999887777 99999999999
Q ss_pred hhCChHHHhhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCH
Q 008800 403 QSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 482 (553)
Q Consensus 403 ~~~~~~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE 482 (553)
......+......+.+....|.+||.||++.+.+|....+++...|.+||.+|+.|++++||||||+|+++||+.++++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de 300 (488)
T KOG2197|consen 221 SSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDE 300 (488)
T ss_pred eeccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCc
Confidence 99887776655556677789999999999999999988777789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhcccccC
Q 008800 483 SQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA 553 (553)
Q Consensus 483 ~~AFw~f~~Lm~~~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf~ 553 (553)
.+|||||++||+++..||..++.||..++..+..+++..||.||+||+..+....+||+||++++|+|||.
T Consensus 301 ~~aFwcFv~fm~~~~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~ 371 (488)
T KOG2197|consen 301 VEAFWCFVGFMDRLRHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFE 371 (488)
T ss_pred hHHHHHHHHHHHHHhhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 6
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-33 Score=291.56 Aligned_cols=199 Identities=27% Similarity=0.368 Sum_probs=167.4
Q ss_pred HHHHHHhhhhc-------CCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhh
Q 008800 331 SEEWTTFLDNE-------GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (553)
Q Consensus 331 ~~~W~~~~~~~-------g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~ 403 (553)
..+|...+..+ .-..-.+|+|++| ++|||+++|+.||..+.|.+.. ...+..|+.+.+.-.
T Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~s~elk~li-RkGiP~~~R~~VW~~~~g~~~~-----------~~~~~~yq~ll~~~~ 190 (436)
T KOG2058|consen 123 QLRWELELQSNIKLHSPNDFPPRSDELKRLI-RKGIPPELRGEVWWVLSGARRQ-----------LNYPGYYQELLRKGD 190 (436)
T ss_pred HHHHHHHhhhhhcccccccccCCcHHHHHHH-HcCCChhhhhHHHHHHhcchhh-----------ccCchhHHHHHhcCC
Confidence 36676666553 1124578999998 9999999999999999994211 112677887765421
Q ss_pred hCChHHHhhhhhhhhhccccccccccCCCCC-CCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCH
Q 008800 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDE 482 (553)
Q Consensus 404 ~~~~~~~~~~~~~~e~~~~IekDV~RT~~~~-~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE 482 (553)
.-. .....+|+.|+.||||++ +.|..++..++..|+|||.||+.+||++|||||||.|||++|++|++|
T Consensus 191 ~~~----------~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~E 260 (436)
T KOG2058|consen 191 EKK----------SPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSE 260 (436)
T ss_pred Ccc----------chHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCCh
Confidence 100 023458999999999999 799988877789999999999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhcccc
Q 008800 483 SQSFWCFVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRS 551 (553)
Q Consensus 483 ~~AFw~f~~Lm~~~~~~-F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkRE 551 (553)
++|||||+++++++.+. |..++.|.+....+|+.||+..+|+|+.||..++++..++++.||+|+|+--
T Consensus 261 E~AFW~Lv~iie~~lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~ 330 (436)
T KOG2058|consen 261 EDAFWMLVALIENYLPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDI 330 (436)
T ss_pred HHHHHHHHHHHHHhchhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhccc
Confidence 99999999999998875 6678999999999999999999999999999999999999999999999853
No 7
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.98 E-value=1.3e-32 Score=270.69 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=176.6
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHhCCCC--chhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCCh---
Q 008800 333 EWTTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP--- 407 (553)
Q Consensus 333 ~W~~~~~~~g~~~~~~eLr~~i~~~GIp--~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~--- 407 (553)
..+..+......++.+|||+.+ ..|+| ..+|+.+|++|||++|...+.| ......++..|...+.+...-+.
T Consensus 11 ~~edvl~~~~~~id~kelr~~~-~~g~p~~~~lR~~~WkllL~Yl~~er~~w--~s~La~~R~~Y~q~i~e~v~epg~~~ 87 (370)
T KOG4567|consen 11 SIEDVLNPADDTIDLKELRKLC-FYGVPDDASLRPLVWKLLLGYLPPERSKW--TSFLAKKRSLYKQFIEEIVDEPGKKD 87 (370)
T ss_pred hHHHhhccccchhhHHHHHHHh-hcCCCCccchhHhHHHHHHhhcChhhhhh--HHHHHHHHHHHHHHHHHhccCccccc
Confidence 4455555544558999999999 58898 6899999999999999988887 44556678888777665432110
Q ss_pred ---------------------HHHhhhhhhhhhccccccccccCCCCCCCCCCCCC------------------------
Q 008800 408 ---------------------EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDN------------------------ 442 (553)
Q Consensus 408 ---------------------~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~------------------------ 442 (553)
.....|.+..+...||++||.||.|...+|.....
T Consensus 88 ~~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~ 167 (370)
T KOG4567|consen 88 NSKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRL 167 (370)
T ss_pred cccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhccc
Confidence 01122333346678999999999999998875321
Q ss_pred -hhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcC----------CHHHHHHHHHHHHHHhccCCCCC----hHHH
Q 008800 443 -PNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME----------DESQSFWCFVALMERLGPNFNRD----QNGM 507 (553)
Q Consensus 443 -~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~----------dE~~AFw~f~~Lm~~~~~~F~~~----~~gm 507 (553)
-......|||..||..||.+|||||||.|+||||+|+. .|++||+||+.||..+++||..+ ..|+
T Consensus 168 gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI 247 (370)
T KOG4567|consen 168 GLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGI 247 (370)
T ss_pred chhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccch
Confidence 11233578999999999999999999999999999994 38999999999999999998652 3589
Q ss_pred HHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhcccccC
Q 008800 508 HSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA 553 (553)
Q Consensus 508 ~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf~ 553 (553)
+..|..+..+|+.+|-+||.||+..+|.|.+|+||||.+++++||.
T Consensus 248 ~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~ 293 (370)
T KOG4567|consen 248 HFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFP 293 (370)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999983
No 8
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=285.45 Aligned_cols=209 Identities=32% Similarity=0.539 Sum_probs=176.8
Q ss_pred CCCCHHHHHHhhhhcCCC---CChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhh
Q 008800 327 PPLGSEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (553)
Q Consensus 327 ~plt~~~W~~~~~~~g~~---~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~ 403 (553)
.+.....|.+.++..+.. ....+++.++ +.|||+.+|+.||.+++|++++... ....|..+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~gip~~~r~~vw~~~~~~~~~~~~----------~~~~y~~~~~~~~ 247 (496)
T COG5210 179 ELAADKLWISYLDPNPLSFLPVQLSKLRELI-RKGIPNELRGDVWEFLLGIGFDLDK----------NPGLYERLLNLHR 247 (496)
T ss_pred hhHHHHHHHHHHhcccchhhhhhHHHHHHHH-HhcCChHhhhhhHHHHhccchhhcc----------CchHHHHHHHHHH
Confidence 556678899999887762 5788999998 6789999999999999999775432 4455655554333
Q ss_pred hCChHHHhhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHH
Q 008800 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDES 483 (553)
Q Consensus 404 ~~~~~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~ 483 (553)
..... ......+|++||.||+|.+..|+...+.+.+.|+|||.+|+.+||++||||||++|+|+||++|..|+
T Consensus 248 ~~~~~-------~~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee 320 (496)
T COG5210 248 EAKIP-------TQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEE 320 (496)
T ss_pred hcCCC-------cHHHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhH
Confidence 22111 00345699999999999999998877665556999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHH--hccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhcccccC
Q 008800 484 QSFWCFVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA 553 (553)
Q Consensus 484 ~AFw~f~~Lm~~--~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf~ 553 (553)
.|||||++||+. +..+|..+++|+..++.++..+++.++|+||+||+..++...+|+++||+++|.++|.
T Consensus 321 ~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p 392 (496)
T COG5210 321 QAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFP 392 (496)
T ss_pred HHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCC
Confidence 999999999993 5567899999999999999999999999999999999999999999999999999873
No 9
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.8e-30 Score=260.74 Aligned_cols=202 Identities=27% Similarity=0.478 Sum_probs=179.0
Q ss_pred CCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHhhhhhhhhhccc
Q 008800 343 RVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (553)
Q Consensus 343 ~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~ 422 (553)
..++.++||+.+ ++|||...|+.+|++|+|+.|..+. -|+...+.++.+|.+++.++......... -.+..+|
T Consensus 174 ~~id~~~Lr~l~-w~Gvp~~~Rp~~Wkll~gylp~n~~--rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~----~~d~~rQ 246 (484)
T KOG1092|consen 174 PIIDLEKLRKLC-WNGVPSKMRPIVWKLLSGYLPPNSD--RREGTLQRKRKEYVDSVVQYFDSLTNGDE----DQDTWRQ 246 (484)
T ss_pred ccccHHHHHHHc-cCCCCccccCccceeeecccCcchh--hhhhhHHHHHHHHHHHHHHHhccCCCccc----cCccccc
Confidence 347899999998 8999999999999999999987653 34777888999999999888765432111 2344579
Q ss_pred cccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcC----------------------
Q 008800 423 IDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------------------- 480 (553)
Q Consensus 423 IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~---------------------- 480 (553)
|..|+.||.|+.++|..+- -++.|.+||..++.++|..||+||.+|++.|++.++.
T Consensus 247 I~id~prm~p~~~l~q~~~--vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~ 324 (484)
T KOG1092|consen 247 IPIDIPRMNPHIPLFQQKI--VQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAEN 324 (484)
T ss_pred cccCCCCCCccccchhhHH--HHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHH
Confidence 9999999999999998643 5689999999999999999999999999999998772
Q ss_pred ---CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhcccccC
Q 008800 481 ---DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA 553 (553)
Q Consensus 481 ---dE~~AFw~f~~Lm~~~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf~ 553 (553)
-|++||||+.+|++.+.+||...|+||+.++..|++|++.+|+.|++||+++|++-..|+|||+-|||.|||.
T Consensus 325 ~~~iEADsyWClskLLD~IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~p 400 (484)
T KOG1092|consen 325 AEDIEADAYWCLSKLLDGIQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFP 400 (484)
T ss_pred HhhhhhhHHHHHHHHHHHhhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhcc
Confidence 2899999999999999999999999999999999999999999999999999999999999999999999983
No 10
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=3.9e-27 Score=239.91 Aligned_cols=204 Identities=24% Similarity=0.368 Sum_probs=160.6
Q ss_pred hhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHH-HHHHHhcHHHHHHHHHHhhhCChHHHhhhhhh
Q 008800 338 LDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAER-EYLRCIKKSEYENIKRQWQSISPEQARRFTKF 416 (553)
Q Consensus 338 ~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er-~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~ 416 (553)
+.+|....+..++|.+ +|.|||+.+|++||....|..- +-|.+-- ..+...+..+...+-++-. ..-.+.
T Consensus 282 LpnWe~m~~SrR~rel-WwQGiP~~VRGkvW~laIGNel-~it~elfd~~la~Aker~ak~~aeq~~-------~sa~~r 352 (586)
T KOG2223|consen 282 LPNWEDMLKSRRVREL-WWQGIPPSVRGKVWSLAIGNEL-NITYELFDIALARAKEREAKSLAEQMS-------NSAADR 352 (586)
T ss_pred ccchHHHHhhHHHHHH-HHccCChhhcchhhHhhhCccc-ccCHHHHHHHHHHHHHHHHHHHHhhcc-------cchhhh
Confidence 3334444456778775 5999999999999999999722 2222211 1122222222333222211 111223
Q ss_pred hhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHHHHHHHHHh
Q 008800 417 RERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERL 496 (553)
Q Consensus 417 ~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~ 496 (553)
+....+|+.|+.||||++.+|+. .+|..+.|..||.+|++|.||+||||||++|+|+|++.| |+.+||.||.+|+++-
T Consensus 353 e~sv~~i~LDisrTfpsl~iFqk-~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdkp 430 (586)
T KOG2223|consen 353 EASVELIKLDISRTFPSLSIFQK-GGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDKP 430 (586)
T ss_pred hcchhheeechhccCcceeeecc-CCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHHHHhccH
Confidence 45567999999999999999996 578999999999999999999999999999999999999 6899999999999985
Q ss_pred cc--CCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 497 GP--NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 497 ~~--~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
+. .|.-+.+.|..++.+++..++...|+|+.||.+.++.|..|.+.|+.++|...+
T Consensus 431 ~q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlysksl 488 (586)
T KOG2223|consen 431 CQQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSL 488 (586)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccC
Confidence 54 477789999999999999999999999999999999999999999999998754
No 11
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.94 E-value=3.1e-27 Score=230.01 Aligned_cols=177 Identities=36% Similarity=0.592 Sum_probs=136.4
Q ss_pred chhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHhhhhhhhhhccccccccccCCCCCCCCCCC
Q 008800 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD 440 (553)
Q Consensus 361 ~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~ 440 (553)
+++|+.+|+.|+|+.+ ... ..|.....++...............+...+|++||.||+++...+.
T Consensus 1 ~~~R~~vW~~ll~~~~----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~-- 65 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEP----NYS---------NNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK-- 65 (214)
T ss_dssp -CCHHHHHHHHCTCSC----HHH---------HHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--
T ss_pred CChHHHHHHHHHccch----hhh---------hhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--
Confidence 3689999999999966 111 1111111111111011111111223445789999999999554444
Q ss_pred CChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHHHHHHH-HHhccCCCCChHHHHHHHHHHHHHHH
Q 008800 441 DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALM-ERLGPNFNRDQNGMHSQLFALSKLVE 519 (553)
Q Consensus 441 ~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm-~~~~~~F~~~~~gm~~~l~~l~~LLq 519 (553)
...++..|.+||.+|+.++|++||+|||++|++++++++.+|++|||||+++| ......|..+.+++...+..++.+++
T Consensus 66 ~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 145 (214)
T PF00566_consen 66 NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNYYLPDFFQPNFKGLQKILKIFEQLLK 145 (214)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTHHGGGGTSTTHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchhcccccccccccccccchhhhhHHHHHH
Confidence 45788999999999999999999999999999999988889999999999999 45666777888899999999999999
Q ss_pred HHcHHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 520 LLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 520 ~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
.++|+|++||++.++++..|+++|++++|+++|
T Consensus 146 ~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l 178 (214)
T PF00566_consen 146 KHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSL 178 (214)
T ss_dssp HHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcC
Confidence 999999999999999999999999999999987
No 12
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.90 E-value=8.3e-24 Score=217.20 Aligned_cols=190 Identities=25% Similarity=0.422 Sum_probs=162.6
Q ss_pred CCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHhhhhhhhhhcc
Q 008800 342 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 421 (553)
Q Consensus 342 g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~ 421 (553)
|.....+++++++..||||+.+|+..|+.|.|... .++.....|+.+.++...... ..-.
T Consensus 154 ~~~~ktdk~~~llkeggiphslr~~lw~rlsga~~----------kkk~ae~sy~~ilk~~andk~----------~~~~ 213 (848)
T KOG2222|consen 154 GMELKTDKFEELLKEGGIPHSLRAFLWMRLSGALA----------KKKDAETSYEDILKACANDKL----------MIGK 213 (848)
T ss_pred ccccchHHHHHHHHcCCCCcchhHHHHHHhhhhhh----------hhccccccHHHHHHHhccccc----------chhH
Confidence 55567789999998899999999999999999843 222334567877766443211 1224
Q ss_pred ccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHHHHHHHHHhcc-CC
Q 008800 422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGP-NF 500 (553)
Q Consensus 422 ~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~~-~F 500 (553)
||++|+-|+.|++.-|..+++.+...|+|||.+.++..||+||||||.-|+|.||+.|. |+.|||++..+++.+.+ +|
T Consensus 214 qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaaiiedilp~nf 292 (848)
T KOG2222|consen 214 QIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAIIEDILPANF 292 (848)
T ss_pred HHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHHHHHhcCchh
Confidence 89999999999999999999999999999999999999999999999999999999995 78999999999999775 55
Q ss_pred C-CChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 501 N-RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 501 ~-~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
+ ...-|++..-.++..|+.-+.|.|-+.|+.++++..+....||+|+|..-|
T Consensus 293 ysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~ 345 (848)
T KOG2222|consen 293 YSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVF 345 (848)
T ss_pred hhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHH
Confidence 4 456699999999999999999999999999999999999999999997543
No 13
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.85 E-value=6.6e-21 Score=206.70 Aligned_cols=201 Identities=24% Similarity=0.410 Sum_probs=165.7
Q ss_pred HHHHHhhhhcCCC---CChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChH
Q 008800 332 EEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (553)
Q Consensus 332 ~~W~~~~~~~g~~---~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 408 (553)
+.|++++.. ++. .+.+.+-..+ ..|||..-|+++|.||.--+..+..... .+.-..--|+.+.++
T Consensus 550 ~~wek~~e~-~~~~~k~d~ed~~~~l-~~gvprsrrgeiwtflA~q~~~~~~l~~---~kr~~~~p~~~llkq------- 617 (948)
T KOG4436|consen 550 ETWEKILER-TRIKIKKDMEDLHSAL-RTGVPRSRRGEIWTFLAEQHSLNHALPD---KKRPPDFPYKELLKQ------- 617 (948)
T ss_pred HHHHHHHHH-hhhcccccHHHHHHHH-HccCchhhhHHHHHHHHHHHHHhccCCc---ccCCCCCChHHHHHH-------
Confidence 689999976 444 4788888877 8999999999999999643211100000 000011224444444
Q ss_pred HHhhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHH
Q 008800 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (553)
Q Consensus 409 ~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~ 488 (553)
+.+..+.|-.|.-||||++++|..+-+.++..|.|+|.+|+..+|++|||||.+++|++||+.| +|+.||-+
T Consensus 618 -------Lte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afel 689 (948)
T KOG4436|consen 618 -------LTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFEL 689 (948)
T ss_pred -------HHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHH
Confidence 3455678999999999999999999999999999999999999999999999999999999999 58999999
Q ss_pred HHHHHHH--hccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 489 FVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 489 f~~Lm~~--~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
+-.||-. ++..|.+++..++.++++|..+++.+.+.||+||++++|.|..|+..||+|.|+--|
T Consensus 690 lk~LM~~r~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf 755 (948)
T KOG4436|consen 690 LKFLMFDRGMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQF 755 (948)
T ss_pred HHHHHHHHhhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhC
Confidence 9999976 445799999999999999999999999999999999999999999999999998654
No 14
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.84 E-value=5.9e-21 Score=204.35 Aligned_cols=194 Identities=23% Similarity=0.368 Sum_probs=165.7
Q ss_pred HHHHHHhhhhcCCCCC---hHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCCh
Q 008800 331 SEEWTTFLDNEGRVMD---SNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 407 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~~---~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~ 407 (553)
...|++++..+|+.++ ..++++.+ +.|+|...|+++|....|. .+-...+..+|.++......
T Consensus 173 ~k~W~~~f~~~G~~~~~~qt~~~~Klv-~~gipe~~rgeiW~l~sGa----------v~~~l~~~Geygkll~~~~G--- 238 (671)
T KOG4347|consen 173 EKFWKKYFIKDGPNMNQIQTILLRKLL-YNGFPEDPRGEIWYLASGA----------VASLLLNPGEYGKLLHSVTG--- 238 (671)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHH-HHhcCCChHHHHHHhhhHH----------HHHhhcCcHHhhhhhhcccC---
Confidence 3569999999998765 56789988 8999999999999999997 44556788999988765443
Q ss_pred HHHhhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHH
Q 008800 408 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFW 487 (553)
Q Consensus 408 ~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw 487 (553)
+.......|++|..|..|.++-|+.+. +...|+|||.+|++.||+|||||-||-+++.+|+.+ .|+.|||
T Consensus 239 -------~~~~a~eEIE~Dl~rsLpEhpA~Q~e~--gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~-~EEeafw 308 (671)
T KOG4347|consen 239 -------KRSVATEEIEPDLGRSLPEHPAFQSEP--GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFC-KEEEAFW 308 (671)
T ss_pred -------CcccccccccCCCCCCCCcchhhhCCC--chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhh-ccchHHH
Confidence 112223589999999999999999755 559999999999999999999999999999999888 5889999
Q ss_pred HHHHHHHHhccCCC-CChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhcc
Q 008800 488 CFVALMERLGPNFN-RDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFK 549 (553)
Q Consensus 488 ~f~~Lm~~~~~~F~-~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFk 549 (553)
+++.+.+++.+.|+ ...-|......+++.|++...|.|++|+...+ ........||+++|-
T Consensus 309 ll~~lce~~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFl 370 (671)
T KOG4347|consen 309 LLSKLCEIYIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFL 370 (671)
T ss_pred HHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHH
Confidence 99999999988755 45667777778899999999999999999999 666899999999984
No 15
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.4e-21 Score=182.70 Aligned_cols=190 Identities=20% Similarity=0.382 Sum_probs=158.5
Q ss_pred HHHHHHhhhhcCCC--CChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChH
Q 008800 331 SEEWTTFLDNEGRV--MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (553)
Q Consensus 331 ~~~W~~~~~~~g~~--~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 408 (553)
..+|.-++++|... ...++++.+| +.|||+++|+.+|.+|.|.+... ..++..|..+..+ +.
T Consensus 75 eskwL~mldnw~~~m~kk~~~ir~rc-rkgippslr~Raw~ylsGa~~~~----------~~np~~~~~~~~~-----pG 138 (267)
T KOG2221|consen 75 ESKWLHMLDNWHEEMRKKQKKIRPRC-RKGIPPSLRGRAWRYLSGAPSPP----------PKNPVVFDELGPA-----PG 138 (267)
T ss_pred HHHHHHHHHHHHHHHHhccccccchh-hcCCCcccchhHHHhhcCCCCCC----------CCCcchhhhccCC-----CC
Confidence 36788888776544 3456788899 89999999999999999985432 2244445443211 11
Q ss_pred HHhhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHH
Q 008800 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (553)
Q Consensus 409 ~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~ 488 (553)
.. ...+-|++|++|-||.+.+|......+.+.|.|+|.+|.+|+|+.||||+-.-|+|+++..|. +.+||||
T Consensus 139 ~p-------~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf~~ 210 (267)
T KOG2221|consen 139 DP-------KTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAFWC 210 (267)
T ss_pred CC-------cchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-HHHHHHH
Confidence 11 122479999999999999999888888899999999999999999999999999999999996 6799999
Q ss_pred HHHHHHHhccC-CCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHH
Q 008800 489 FVALMERLGPN-FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWV 544 (553)
Q Consensus 489 f~~Lm~~~~~~-F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWf 544 (553)
|+.+.+.+.+. |..+...++..-.+|..|+++.+|..|.||....+++..|...||
T Consensus 211 ~vqicekylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 211 FVQICEKYLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred HHHHHHHHcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 99999998876 566788899999999999999999999999999999999999997
No 16
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.77 E-value=1.1e-18 Score=184.12 Aligned_cols=182 Identities=20% Similarity=0.323 Sum_probs=145.3
Q ss_pred CCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHhhhhhhhhhcc
Q 008800 342 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 421 (553)
Q Consensus 342 g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~ 421 (553)
|-......+.+.. ++|+|+-+|+-+|..||++-. .....|..+ ....+. ....
T Consensus 340 g~~~k~~qI~r~a-~vdvpp~~R~~iW~aLL~l~e-------------~~~a~y~~I-Dk~Ts~------------~tdr 392 (725)
T KOG1093|consen 340 GYPKKRLQILREA-YVDVPPLYRGFIWAALLQLEE-------------NHTAFYTLI-DKGTSH------------STDR 392 (725)
T ss_pred cchHHHHHHHHHh-ccCCChhHhHHHHHHHhcCcc-------------ccchhhhhh-hcCCCC------------cchh
Confidence 3333334444444 789999999999999998822 122333322 111111 1235
Q ss_pred ccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHh-cCCHHHHHHHHHHHHHHhccC-
Q 008800 422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFV-MEDESQSFWCFVALMERLGPN- 499 (553)
Q Consensus 422 ~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v-~~dE~~AFw~f~~Lm~~~~~~- 499 (553)
|||.|++|+.......+.+. +++.|+|+|.+++..+|..-|.||...||+||++. +.+|..||-|+..|+-+++.+
T Consensus 393 qievdiprchQyd~~lsSp~--~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~f 470 (725)
T KOG1093|consen 393 QIEVDIPRCHQYDELLSSPK--GHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHF 470 (725)
T ss_pred hhhcccchhhhcccccCCHH--HHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999987766666543 67999999999999999999999999999998765 578999999999999998876
Q ss_pred CCCC-hHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 500 FNRD-QNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 500 F~~~-~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
|..| ..-++..+..|.+++..+||+|++||..+|+.+.+|+..||+|+|+.+|
T Consensus 471 flkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvl 524 (725)
T KOG1093|consen 471 FLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVL 524 (725)
T ss_pred HhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhc
Confidence 5554 4578899999999999999999999999999999999999999999886
No 17
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.74 E-value=4.2e-18 Score=181.08 Aligned_cols=183 Identities=26% Similarity=0.408 Sum_probs=146.6
Q ss_pred ChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHhhhhhhhhhcccccc
Q 008800 346 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDK 425 (553)
Q Consensus 346 ~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~Iek 425 (553)
...++...+ ..|||..+|+.+|..+++.-- +.. .....+....++....+ ....+| +
T Consensus 134 ~~~~l~~~~-~~gip~~~r~~~W~l~~~~~~--------~~~---~~~~~~l~~~~~~~~~~----------~~~~~~-~ 190 (397)
T KOG1102|consen 134 RPLKLSRRV-LVGIPDELRGLVWQLLLYAVE--------ESL---FDSLDELYRLQLDEPEP----------HESEII-R 190 (397)
T ss_pred cHHHHHHHh-hccccHHHHHHHHHHhcccHh--------hhh---hhhHHHHHHHhhccCCC----------chhHHH-h
Confidence 456677766 799999999999999998510 000 01111111111111111 111356 9
Q ss_pred ccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHHHHHHHHHhc-cCCCCCh
Q 008800 426 DVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLG-PNFNRDQ 504 (553)
Q Consensus 426 DV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~-~~F~~~~ 504 (553)
|+.||+|.+..|....+.+++.|.+||.+|+.|++++||||||..++++++.++. |++|||.++.+|.... ..|..++
T Consensus 191 d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~~~~~~~~~ 269 (397)
T KOG1102|consen 191 DLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYGLDLLSPGF 269 (397)
T ss_pred hccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccchhcccccC
Confidence 9999999999999888888999999999999999999999999999999999996 8999999999998654 4456677
Q ss_pred HHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 505 NGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 505 ~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
.++...+..+..+++...|.++.|+...++...+|+..|++|+|.-.|
T Consensus 270 ~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~ 317 (397)
T KOG1102|consen 270 SGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKF 317 (397)
T ss_pred CchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccc
Confidence 899999999999999999999999999999999999999999998654
No 18
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6.2e-18 Score=178.44 Aligned_cols=188 Identities=26% Similarity=0.339 Sum_probs=136.0
Q ss_pred chhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCC---------------------hHHHhhhhhhhhh
Q 008800 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS---------------------PEQARRFTKFRER 419 (553)
Q Consensus 361 ~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~---------------------~~~~~~~~~~~e~ 419 (553)
..+|+.+|+.+||+.|.+.+.+.- .....+..|.+++..+...+ .....+|....|.
T Consensus 27 s~~Rgv~Wrl~L~vLp~~~ss~id--~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL 104 (625)
T KOG1091|consen 27 SNLRGVRWRLLLGVLPSENSSWID--NLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAEL 104 (625)
T ss_pred hhhhhHHHHHhheecCCCchhHHH--HHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHH
Confidence 357999999999999988665532 22334455655443332211 1122344444567
Q ss_pred ccccccccccCCCCC-CCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCC-----------------
Q 008800 420 KGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMED----------------- 481 (553)
Q Consensus 420 ~~~IekDV~RT~~~~-~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~d----------------- 481 (553)
...|++||.||||.+ .+|+.+. -+..|++||..|+..+|.+||-|||++|+||+++|..-
T Consensus 105 ~~~i~qDvsRtfPe~~~fFqs~~--~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~ 182 (625)
T KOG1091|consen 105 EKTIDQDVSRTFPEHSLFFQSPE--VQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG 182 (625)
T ss_pred HHhhcchhhccCcchhhhhcCch--hhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence 789999999999999 7777654 34899999999999999999999999999999988731
Q ss_pred -------------HHHHH--HHHHHHHHHhcc------------------------CCCCChHHHHHHHHHHHHHHHHHc
Q 008800 482 -------------ESQSF--WCFVALMERLGP------------------------NFNRDQNGMHSQLFALSKLVELLD 522 (553)
Q Consensus 482 -------------E~~AF--w~f~~Lm~~~~~------------------------~F~~~~~gm~~~l~~l~~LLq~~d 522 (553)
+.+++ -+|+.+|..-.. .+....+-+......+..++...|
T Consensus 183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D 262 (625)
T KOG1091|consen 183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD 262 (625)
T ss_pred cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence 22233 245555532111 112223345556677889999999
Q ss_pred HHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 523 NPLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 523 P~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
+.|+.||...+|.+.+|..||+.+||-|||
T Consensus 263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREf 292 (625)
T KOG1091|consen 263 KSLHSHLVELGIEPQIFGIRWLRLLFGREF 292 (625)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHcchh
Confidence 999999999999999999999999999998
No 19
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=99.64 E-value=2.4e-16 Score=157.84 Aligned_cols=179 Identities=20% Similarity=0.222 Sum_probs=136.0
Q ss_pred CChHHHHHHHHhC-C-CCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHhhhhhhhhhccc
Q 008800 345 MDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (553)
Q Consensus 345 ~~~~eLr~~i~~~-G-Ip~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~ 422 (553)
.+++.||..-... | +.+++|+.||+-|+|..-.+... ..|.+..+. ....+|
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~~-----------~~~~~~~q~---------------hkd~nQ 99 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLDA-----------TSTLTPVQK---------------HKDYNQ 99 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCcc-----------cccCChhhh---------------Ccccce
Confidence 6788888765422 3 58899999999999974332211 111111111 112369
Q ss_pred cccccccCCCCCCC---CCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHHHHHHHHHhccC
Q 008800 423 IDKDVVRTDRSVTF---FDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGPN 499 (553)
Q Consensus 423 IekDV~RT~~~~~~---f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~~~ 499 (553)
+..||+|++...+- +.. ....++.|..++......+|.+.|.||.+|||..+|+++. |.+|+-...+|-....++
T Consensus 100 V~LDv~RSl~rfppg~p~~~-R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~~~~lrd 177 (395)
T KOG2595|consen 100 VILDVERSLGRFPPGIPKEL-RLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELSTLHLRD 177 (395)
T ss_pred EEEehhhhhccCCCCCCHHH-HHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHHHHHHHH
Confidence 99999999866542 111 1134567777777778889999999999999999999995 899999988888765555
Q ss_pred C-CCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 500 F-NRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 500 F-~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
| .+.+.+..+++..+..+++..+|+||+.|++.+++. +|+..|++|||.+.+
T Consensus 178 fM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L 230 (395)
T KOG2595|consen 178 FMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNL 230 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcc
Confidence 5 456778889999999999999999999999999998 999999999999865
No 20
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.19 E-value=3.9e-11 Score=131.54 Aligned_cols=196 Identities=18% Similarity=0.265 Sum_probs=158.2
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHh
Q 008800 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 411 (553)
Q Consensus 332 ~~W~~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~ 411 (553)
+.|+..-. ....+|+.+| .+|+|+..|-.+|..|+.... . +. ....+.|.+++.. +..+++
T Consensus 164 ~~~E~~r~-----~s~~~l~e~V-e~~~p~~frli~~qlLssatd-----~--~q--~~I~e~~sdl~~~----s~~~Ek 224 (948)
T KOG4436|consen 164 DLWERCRK-----KSLHKLKELV-EGGIPMHFRLIRWQLLSSATD-----R--EQ--ALIFEDYSDLAPC----SSQQEK 224 (948)
T ss_pred hhhhhhhh-----hchhhhHHHH-hcCCchHHHHHHHHHhccccc-----c--hh--hHHHHHHHHHhhh----cchhhh
Confidence 45655432 3567899998 999999999999999987622 1 11 1235666666543 222221
Q ss_pred hhhhhhhhccccccccccCCCCCCCCCCCCCh-------hhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHH
Q 008800 412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNP-------NVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQ 484 (553)
Q Consensus 412 ~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~-------~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~ 484 (553)
......|..|+.||.+.+.+|+..... .++.|+|+..+|.....++|||||-+.+++.++..+ +++.
T Consensus 225 -----~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~ 298 (948)
T KOG4436|consen 225 -----ELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQM-PVEE 298 (948)
T ss_pred -----hHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcC-cHHH
Confidence 112347899999999999999986655 689999999999999999999999999999999999 4789
Q ss_pred HHHHHHHHHHHhc--cCCCCChHHHHHHHHHHHHHHHHHcH-HHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 485 SFWCFVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDN-PLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 485 AFw~f~~Lm~~~~--~~F~~~~~gm~~~l~~l~~LLq~~dP-~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
+|-.++.+|..++ ..|.+.+..+...+.++....+...| .|+.|+.+......++.-.||++.|.--|
T Consensus 299 assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~ 369 (948)
T KOG4436|consen 299 ASSVKVQLMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTF 369 (948)
T ss_pred HHHHHHHHHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccC
Confidence 9999999998654 56888888888889999999999999 99999999999999999999999997543
No 21
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=98.26 E-value=1.1e-06 Score=91.47 Aligned_cols=125 Identities=20% Similarity=0.316 Sum_probs=89.5
Q ss_pred ccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCccc--chhhhHHHHHHhcCCHHHHHHHHHHHHHHhccC
Q 008800 422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ--GMSDLLSPILFVMEDESQSFWCFVALMERLGPN 499 (553)
Q Consensus 422 ~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQ--GM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~~~ 499 (553)
+|.+|..|-.-....-..+..+.+-.|..++.-|+.. .++.|.. |.-.|+-||+..--+-.+.|-||.++|+++.+.
T Consensus 69 ~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~-Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPk 147 (669)
T KOG3636|consen 69 ALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKK-RNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPK 147 (669)
T ss_pred HHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhc-cCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCC
Confidence 5666665543333222223344455778888877752 2444443 445688888877667889999999999998875
Q ss_pred CCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccc
Q 008800 500 FNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKR 550 (553)
Q Consensus 500 F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkR 550 (553)
=.+- .| .-+..|+-||+.+||+|+.||....|+|.+|+..||-+||+-
T Consensus 148 dcrp-kg--~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas 195 (669)
T KOG3636|consen 148 DCRP-KG--QIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFAS 195 (669)
T ss_pred CCCC-CC--ccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHH
Confidence 3321 11 235678899999999999999999999999999999999963
No 22
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=97.58 E-value=5.7e-05 Score=82.73 Aligned_cols=83 Identities=36% Similarity=0.645 Sum_probs=73.9
Q ss_pred CCCCCCCCHHHHHHhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHh
Q 008800 323 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 402 (553)
Q Consensus 323 ~~r~~plt~~~W~~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~ 402 (553)
+.+..+++.++|+..|+.+|+..+..++-+++..+||++.+|+++|.+|+|.|+.+++.++|..+....+..|..|..+.
T Consensus 42 ~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c 121 (488)
T KOG2197|consen 42 IKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVC 121 (488)
T ss_pred eccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHc
Confidence 35567888999999999999998777777778899999999999999999999999999999999999999999988776
Q ss_pred hhC
Q 008800 403 QSI 405 (553)
Q Consensus 403 ~~~ 405 (553)
..+
T Consensus 122 ~~~ 124 (488)
T KOG2197|consen 122 QMM 124 (488)
T ss_pred chh
Confidence 654
No 23
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=93.89 E-value=0.018 Score=60.54 Aligned_cols=34 Identities=59% Similarity=1.096 Sum_probs=31.9
Q ss_pred CCcccchhhhHHHHHHhcCCHHHHHHHHHHHHHH
Q 008800 462 LGYCQGMSDLLSPILFVMEDESQSFWCFVALMER 495 (553)
Q Consensus 462 lGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~ 495 (553)
+|..|||+|++||||.-.-||.++||||++||..
T Consensus 566 vglmqgmsdlvapilaevldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence 6888999999999999888999999999999985
No 24
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=0.51 Score=47.59 Aligned_cols=164 Identities=18% Similarity=0.236 Sum_probs=95.1
Q ss_pred ChHHHHHHHHhCCC---CchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHhhhhhhhhhccc
Q 008800 346 DSNALRKRIFYGGV---DHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (553)
Q Consensus 346 ~~~eLr~~i~~~GI---p~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~e~~~~ 422 (553)
...+||++. +.|- .+.+|+.|+..|..-.|.-... -...-|.++......-....-.....+
T Consensus 31 elqelkqla-rqgywaqshalrgkvyqrlirdipcrtvt--------pdasvysdivgkivgkhsssclplpef------ 95 (559)
T KOG2801|consen 31 ELQELKQLA-RQGYWAQSHALRGKVYQRLIRDIPCRTVT--------PDASVYSDIVGKIVGKHSSSCLPLPEF------ 95 (559)
T ss_pred hHHHHHHHH-hcchHHhhhhhhhHHHHHHHhcCCccccC--------CchhHHHHHHHHHhccCCcccccchhh------
Confidence 467788877 6665 6789999999998876652111 123455554433211000000000000
Q ss_pred cccccccC-CCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHHHHHHHHHhcc--C
Q 008800 423 IDKDVVRT-DRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCFVALMERLGP--N 499 (553)
Q Consensus 423 IekDV~RT-~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f~~Lm~~~~~--~ 499 (553)
|..| .|.+-+ +..+....+.||.+.+..-||+.+|..+..+++.+|-+.-||+++|---++++.---+ .
T Consensus 96 ----vdntqvpsycl----nargegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrr 167 (559)
T KOG2801|consen 96 ----VDNTQVPSYCL----NARGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRR 167 (559)
T ss_pred ----cccCcCchhhh----cCcCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchh
Confidence 0011 111111 1223457899999999999999999999999999998888999888666555421111 1
Q ss_pred C-CCChHHHHHHHHHHHHHHHHHcHHHHHHHHHC
Q 008800 500 F-NRDQNGMHSQLFALSKLVELLDNPLHNYFKQN 532 (553)
Q Consensus 500 F-~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~ 532 (553)
. ....-.....+.++..|+.++...-++.+...
T Consensus 168 lidqsflafesscmtfgdlvnkycqaahklmvav 201 (559)
T KOG2801|consen 168 LIDQSFLAFESSCMTFGDLVNKYCQAAHKLMVAV 201 (559)
T ss_pred hhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 1 11112445556677777777766666655543
No 25
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=66.62 E-value=36 Score=27.93 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=42.8
Q ss_pred CCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCC--cCCceee
Q 008800 64 ISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGL--AFPPLYF 141 (553)
Q Consensus 64 I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~il~~~dG~--~~P~L~F 141 (553)
.+|.|.|.+.. -.+.|+|+.... .. ..+|++.+|..+++.|++..---+-|+.+++. .--.++|
T Consensus 12 ~~G~L~l~~d~--~~~~W~~~~~~~----------~~--~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~~~~~~~f~F 77 (79)
T PF08567_consen 12 KDGTLTLTEDR--KPLEWTPKASDG----------PS--TVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDSSEESKTFVF 77 (79)
T ss_dssp EEEEEEEETTC--SSEEEEECCSSS----------SS--EEEEETTTEEEEEE--TTSSTEEEEEEETTSC---CCCEEE
T ss_pred CCcEEEEecCC--ceEEEeecCCCC----------Cc--eEEEEHHHhhhhccCCCCCcceEEEEEEecCCcccceEEEE
Confidence 56999997542 247888853322 11 26799999999999999776666788888873 3455666
Q ss_pred c
Q 008800 142 Y 142 (553)
Q Consensus 142 ~ 142 (553)
+
T Consensus 78 ~ 78 (79)
T PF08567_consen 78 T 78 (79)
T ss_dssp -
T ss_pred e
Confidence 4
No 26
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=59.65 E-value=9.2 Score=32.44 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=27.8
Q ss_pred eeeeCCCeeEEEEeCCC-CCceEEEEEeCCCC
Q 008800 104 RAVPFTEVRSIRRHTPA-FGWQYIIVVLSSGL 134 (553)
Q Consensus 104 ~~v~ls~i~si~~~~p~-~g~~~~il~~~dG~ 134 (553)
..|||++|..|..++|. .+.+||.|++++|.
T Consensus 27 ~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~g~ 58 (94)
T PF14472_consen 27 KTIPLSAISGVEWKPPGGLTNGYLRFVLRGGA 58 (94)
T ss_pred EEEEHHHcceEEEEcCCceeEEEEEEEECCcC
Confidence 57999999999999996 77999999998865
No 27
>PF14961 BROMI: Broad-minded protein
Probab=49.24 E-value=61 Score=39.45 Aligned_cols=104 Identities=17% Similarity=0.278 Sum_probs=69.8
Q ss_pred hHHhhhccceeeecCCCCcccchhhhHHHHHHhc-CCHHHHHHHHHHHHHHhccCC-----------CCC---hHHHH--
Q 008800 446 HLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVM-EDESQSFWCFVALMERLGPNF-----------NRD---QNGMH-- 508 (553)
Q Consensus 446 ~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~-~dE~~AFw~f~~Lm~~~~~~F-----------~~~---~~gm~-- 508 (553)
..-.+||..|..++..=+|. |..-.++.++++| .|-+.+.-.+.+|-..+...| .+. .+||.
T Consensus 1084 ~s~l~~~~~~~~~~~~~~y~-g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~ 1162 (1296)
T PF14961_consen 1084 KSSLHILFEFIHFCLQGSYP-GHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPV 1162 (1296)
T ss_pred cchhHHHhhhhcccCCCCCC-CchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCch
Confidence 44556777766666666664 7777777777776 444455544444444332111 111 12332
Q ss_pred --HHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccc
Q 008800 509 --SQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKR 550 (553)
Q Consensus 509 --~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkR 550 (553)
.-+..++.+|+...|.+|.-|...|..+...|.||+.-+|=.
T Consensus 1163 ~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWn 1206 (1296)
T PF14961_consen 1163 YFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWN 1206 (1296)
T ss_pred hhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhh
Confidence 245678999999999999999999999999999999988843
No 28
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=41.07 E-value=53 Score=30.20 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=21.5
Q ss_pred CeeEEEEeCCCCCceEEEEEe---CCCCcCCceee
Q 008800 110 EVRSIRRHTPAFGWQYIIVVL---SSGLAFPPLYF 141 (553)
Q Consensus 110 ~i~si~~~~p~~g~~~~il~~---~dG~~~P~L~F 141 (553)
-+..|-++.| .|.+-+|..- .||..+|.||.
T Consensus 20 gvl~I~~rcp-~g~P~VV~t~p~l~dg~PfPTly~ 53 (167)
T COG1507 20 GVLKIAYRCP-YGEPGVVKTAPKLDDGTPFPTLYY 53 (167)
T ss_pred CceEEEEECC-CCCceEEeecCCCCCCCcCCceee
Confidence 4556777777 4555554443 49999999999
No 29
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=33.80 E-value=2.3e+02 Score=23.56 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=31.0
Q ss_pred ccCCceEEEEee-CCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEE
Q 008800 62 ERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYII 127 (553)
Q Consensus 62 ~~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~i 127 (553)
+.-+|+|.|.+. ++-+-+.|.|-+..+. .-..+-|.-.|..-.++.+...|.=|+.
T Consensus 13 d~~KG~l~l~~~~d~l~~f~W~~r~~~~~----------~e~d~il~pg~~~f~~V~~c~tGRVy~L 69 (85)
T PF04683_consen 13 DPRKGLLYLYKSEDGLLHFCWKPRDTTGE----------VEDDLILFPGDATFKKVPQCKTGRVYVL 69 (85)
T ss_dssp -SS-EEEEEEETTTS-EEEEEEETST-------------EEEEEEE-TTTEEEEE-TTSSTS-EEEE
T ss_pred CCCCEEEEEEECCCCeEEEEEEEcCcCCC----------cccceecCCCCeEEEECCcCCCCeEEEE
Confidence 457899999984 5789999999654210 0112334446666666655566766653
No 30
>PF07024 ImpE: ImpE protein; InterPro: IPR009211 This entry contains proteins of unknown function that occur in bacteria that interact with and manipulate eukaryotic cells []. Salmonella enterica protein SciE is encoded in the centisome 7 genomic island (SCI) []. Deletion of the entire island affects the ability of bacteria to enter eukaryotic cells []. Therefore, SciE and other SCI proteins may be involved in virulence. Interestingly, another member of this family, Rhizobium leguminosarum protein ImpE, has been reported to be encoded by an avirulence locus involved in temperature-dependent protein secretion []. It is believed that the imp locus is involved in the secretion to the environment of proteins, including periplasmic RbsB protein, that cause blocking of R. leguminosarum infection in plants [].; PDB: 1ZBP_A.
Probab=25.66 E-value=67 Score=28.82 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=22.2
Q ss_pred eeCCCeeEEEEeCCCC----CceEEEEEeCCCCc
Q 008800 106 VPFTEVRSIRRHTPAF----GWQYIIVVLSSGLA 135 (553)
Q Consensus 106 v~ls~i~si~~~~p~~----g~~~~il~~~dG~~ 135 (553)
||+++|.||++.+|.. =|.-..|.++||..
T Consensus 30 vPf~~I~~l~~~~p~~l~DlvWrpa~i~l~dG~~ 63 (123)
T PF07024_consen 30 VPFSRIASLEFEPPASLRDLVWRPAEITLRDGGE 63 (123)
T ss_dssp EEGGGEEEEEE----SSGGGTEEEEEEEETTTEE
T ss_pred EEHHHccceecCCCCCHHHhcccceEEEEeCCCe
Confidence 9999999999999943 37778999999865
No 31
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=24.17 E-value=76 Score=27.07 Aligned_cols=93 Identities=16% Similarity=0.251 Sum_probs=48.4
Q ss_pred EEEeeCCeEEccCCcccccCCceEEEEeeCCceeEEeeecCCCCCCcccccc---ccCcceeeeeeCCCeeEEEEeCCCC
Q 008800 45 LVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEK---DRNLYTIRAVPFTEVRSIRRHTPAF 121 (553)
Q Consensus 45 llf~K~~V~vhpt~~~~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~---d~~~~~~~~v~ls~i~si~~~~p~~ 121 (553)
++|.-+-..|.| .+.++|.|.|.+. .|-++|+............ ..........|+++|..|+.|.--+
T Consensus 2 i~~s~~c~~I~~----~~~~~G~l~i~~~----~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyll 73 (106)
T PF14844_consen 2 ILLSVPCELITP----LDSIPGTLIITKS----SIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLL 73 (106)
T ss_dssp -SEEEEEEEEET----TEEEEEEEEE-SS----EEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETT
T ss_pred EEEEEEEEEEEe----eeeEEEEEEEeCC----EEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcC
Confidence 444555555555 3459999999855 4667777111100000000 0111123569999999999886544
Q ss_pred CceEEEEEeCCCCcCCceeeccCCH
Q 008800 122 GWQYIIVVLSSGLAFPPLYFYTGGV 146 (553)
Q Consensus 122 g~~~~il~~~dG~~~P~L~F~~GG~ 146 (553)
---=+.|...||.++= |-|.+.+.
T Consensus 74 r~~AlEiF~~dg~s~f-~~F~~~~~ 97 (106)
T PF14844_consen 74 RDTALEIFFSDGRSYF-FNFESKKE 97 (106)
T ss_dssp EEEEEEEEETTS-EEE-EE-SSHHH
T ss_pred cceEEEEEEcCCcEEE-EEcCCHHH
Confidence 3333688889998632 34444444
No 32
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=23.20 E-value=51 Score=21.23 Aligned_cols=15 Identities=47% Similarity=0.798 Sum_probs=11.1
Q ss_pred CCcccchhhhHHHHH
Q 008800 462 LGYCQGMSDLLSPIL 476 (553)
Q Consensus 462 lGYvQGM~dL~a~LL 476 (553)
-||.||+.|.+--.|
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 389999988765544
No 33
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=21.82 E-value=4.8e+02 Score=21.86 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=47.3
Q ss_pred EEEEeeCCeEEccCCccc-ccCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCC
Q 008800 44 ELVYLKDNVTIHPTQFAS-ERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (553)
Q Consensus 44 ~llf~K~~V~vhpt~~~~-~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g 122 (553)
.++|..++|-++-...+. ..-.|.|.|+- =-|-|++..+.. .. ..++||++|..+....-.++
T Consensus 15 ~~~~~q~~V~LYdG~~K~~~~q~G~l~LTs----HRliw~d~~~~~-----------~~-s~~l~L~~i~~~e~~~gf~~ 78 (89)
T PF11605_consen 15 TIVYQQDGVGLYDGDQKTPNFQNGRLYLTS----HRLIWVDDSDPS-----------KH-SIALPLSLISHIEYSAGFLK 78 (89)
T ss_dssp -EEEEEEEEEEEETTECSTT-SCEEEEEES----SEEEEEESSGHC-----------HH--EEEEGGGEEEEEEE-STTS
T ss_pred eEEEEecCeeeEcCCccCccccCCEEEEEe----eEEEEEcCCCCc-----------ee-EEEEEchHeEEEEEEccccC
Confidence 789999999998876555 55689999983 378898754332 11 36899999999977655442
Q ss_pred -ceEEEEEe
Q 008800 123 -WQYIIVVL 130 (553)
Q Consensus 123 -~~~~il~~ 130 (553)
..=|+|.+
T Consensus 79 sSpKI~l~l 87 (89)
T PF11605_consen 79 SSPKIILHL 87 (89)
T ss_dssp SS-EEEEEE
T ss_pred CCCeEEEEe
Confidence 22355554
No 34
>PRK03636 hypothetical protein; Provisional
Probab=20.51 E-value=91 Score=29.85 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=48.6
Q ss_pred eeEEEEeCCCCCceEEEEEeCCCCcCCceeeccCCHHHHHHHHHhcccccccCCCCceEEEeCC
Q 008800 111 VRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDF 174 (553)
Q Consensus 111 i~si~~~~p~~g~~~~il~~~dG~~~P~L~F~~GG~~~fl~~L~~~~~l~rS~~d~~~~lv~~~ 174 (553)
+..||+..-..+..++++++-.|..-+|+-|+.||. .+.++-+-|.++. -.-+.++|+.=.+
T Consensus 40 L~~VHFVe~~~~~~r~l~iS~~~~~~~pF~F~k~~~-~~~d~e~aFhdir-lN~~~~iYIql~F 101 (179)
T PRK03636 40 MEKVHFVENAEYCPRGLVMSAHGVDDVPFRFFKGNV-MTTDAEKSFHDIR-LNRDEDIYIQLNF 101 (179)
T ss_pred HhheeeeccccCCCceEEEEeeccCCCceEEEeCCc-eecCHHHHHHHHH-cCCCCCeEEEEec
Confidence 345777777788899999999999999999999998 7778888877776 3445668887443
Done!