Query 008800
Match_columns 553
No_of_seqs 349 out of 1537
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:59:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 9.3E-40 3.2E-44 347.0 16.7 211 331-553 8-246 (396)
2 2qfz_A TBC1 domain family memb 100.0 1E-39 3.5E-44 340.9 14.0 211 330-553 25-259 (345)
3 2qq8_A TBC1 domain family memb 100.0 6.3E-39 2.2E-43 333.5 14.2 219 331-553 21-243 (334)
4 3qye_A TBC1 domain family memb 100.0 1.2E-39 4.1E-44 338.4 6.1 205 330-553 29-238 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 3.5E-38 1.2E-42 324.6 10.2 196 331-553 5-204 (310)
6 4hl4_A TBC1 domain family memb 100.0 4.5E-34 1.5E-38 291.6 5.5 192 331-552 20-216 (292)
7 3qwl_A TBC1 domain family memb 100.0 8.2E-29 2.8E-33 252.0 10.3 189 332-553 27-217 (294)
8 2cay_A VPS36 PH domain, vacuol 96.1 0.012 4.1E-07 53.0 7.3 102 44-161 30-136 (145)
9 2hth_B Vacuolar protein sortin 94.9 0.2 6.8E-06 44.7 10.8 95 44-155 18-126 (140)
10 1pfj_A TFIIH basal transcripti 89.9 0.95 3.2E-05 38.3 7.4 63 65-145 21-83 (108)
11 2r2y_A Protein ADRM1; proteaso 39.7 1.4E+02 0.0047 26.6 8.8 55 61-126 43-98 (153)
12 2kr0_A Proteasomal ubiquitin r 33.0 2.5E+02 0.0087 29.0 10.9 83 61-158 44-133 (411)
13 1y5o_A TFB1, RNA polymerase II 27.8 2E+02 0.0069 24.2 7.4 55 63-131 11-65 (115)
14 1zbp_A Hypothetical protein VP 25.0 45 0.0015 32.7 3.3 35 98-135 163-201 (273)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=9.3e-40 Score=346.96 Aligned_cols=211 Identities=25% Similarity=0.442 Sum_probs=185.5
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHH
Q 008800 331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 410 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~ 410 (553)
.++|.++++.+. .++.++||+++ ++|||+.+|+.||++|||++|.+.+.+ +.....++..|..++++|.....
T Consensus 8 ~~kw~~lL~~~~-~~d~~~Lr~l~-~~GIP~~lR~~vW~~LLg~~~~~~~~~--~~~l~~~~~~Y~~l~~~~~~~~~--- 80 (396)
T 1fkm_A 8 ISKFDNILKDKT-IINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTKRQ--EGFLQRKRKEYRDSLKHTFSDQH--- 80 (396)
T ss_dssp HHHHHHHHSSCS-BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGGGH--HHHHHHHHHHHHHHHHHTSSSSC---
T ss_pred HHHHHHHHcCCC-CCCHHHHHHHH-HcCCCHHHHHHHHHHHHCCCCCChhHH--HHHHHHHHHHHHHHHHHHhhccC---
Confidence 489999998643 48999999988 689999999999999999999877544 55667788999999998764211
Q ss_pred hhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcC----------
Q 008800 411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME---------- 480 (553)
Q Consensus 411 ~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~---------- 480 (553)
....+..++|++||.||+|++++|.. ..+++.|+|||.+|+.+||++|||||||+||||||+++.
T Consensus 81 ---~~~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~ 155 (396)
T 1fkm_A 81 ---SRDIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID 155 (396)
T ss_dssp ---STHHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred ---cccHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence 01223346899999999999999986 457899999999999999999999999999999998752
Q ss_pred --------C----------HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHH
Q 008800 481 --------D----------ESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFR 542 (553)
Q Consensus 481 --------d----------E~~AFw~f~~Lm~~~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~r 542 (553)
+ |++|||||++||+++..+|..+++|+...+.+++.||+..+|+||+||++.++.+.+|+++
T Consensus 156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~r 235 (396)
T 1fkm_A 156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFR 235 (396)
T ss_dssp GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHH
T ss_pred cccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 1 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccC
Q 008800 543 WVLIQFKRSDA 553 (553)
Q Consensus 543 WfltlFkREf~ 553 (553)
||+|+|+|||.
T Consensus 236 W~l~LF~~~~p 246 (396)
T 1fkm_A 236 WMNCLLMREFQ 246 (396)
T ss_dssp HHHTTTGGGSC
T ss_pred HHHHHHHhhCC
Confidence 99999999983
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=1e-39 Score=340.88 Aligned_cols=211 Identities=21% Similarity=0.419 Sum_probs=181.9
Q ss_pred CHHHHHHhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHH
Q 008800 330 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (553)
Q Consensus 330 t~~~W~~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~ 409 (553)
..++|.++++.+ .++.++||+++ ++|||+.+|+.||++|||++|.+.+. +......++..|..++++|......+
T Consensus 25 r~~kw~~~l~~~--~~d~~~Lr~l~-~~GiP~~~R~~vW~~llg~~p~~~~~--~~~~l~~~~~~Y~~l~~~~~~~~~~~ 99 (345)
T 2qfz_A 25 RLDKFKQLLAGP--NTDLEELRRLS-WSGIPKPVRPMTWKLLSGYLPANVDR--RPATLQRKQKEYFAFIEHYYDSRNDE 99 (345)
T ss_dssp HHHHHHHHHHCS--BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHH-HCCCCHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 358999999853 58999999998 69999999999999999999876543 45566678899999999886532111
Q ss_pred HhhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcC---------
Q 008800 410 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVME--------- 480 (553)
Q Consensus 410 ~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~--------- 480 (553)
...+..++|++||.||+|+ ++|..+ .+++.|+|||.+|+.+||++|||||||+||||||+++.
T Consensus 100 -----~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~ 171 (345)
T 2qfz_A 100 -----VHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEV 171 (345)
T ss_dssp ------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC----
T ss_pred -----chHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccc
Confidence 1223446899999999999 999863 46789999999999999999999999999999998873
Q ss_pred ---------------CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHH
Q 008800 481 ---------------DESQSFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVL 545 (553)
Q Consensus 481 ---------------dE~~AFw~f~~Lm~~~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfl 545 (553)
+|++|||||++||+++.++|..+++|+...+.+++.||+..+|+||+||++.++.+.+||++||+
T Consensus 172 ~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~ 251 (345)
T 2qfz_A 172 DTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMN 251 (345)
T ss_dssp -CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 29999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HhcccccC
Q 008800 546 IQFKRSDA 553 (553)
Q Consensus 546 tlFkREf~ 553 (553)
|+|+|||.
T Consensus 252 ~lF~~~~p 259 (345)
T 2qfz_A 252 NLLMREVP 259 (345)
T ss_dssp TTTTTTSC
T ss_pred HHHcccCC
Confidence 99999983
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-39 Score=333.47 Aligned_cols=219 Identities=22% Similarity=0.337 Sum_probs=171.6
Q ss_pred HHHHH-HhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHH
Q 008800 331 SEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (553)
Q Consensus 331 ~~~W~-~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~ 409 (553)
..+|. .++..++...+.++||+++ ++|||+.+|+.||++|+|+.. ..+...+.......+..|..+...+.....+.
T Consensus 21 ~~~W~~~il~~w~~~~~~~~lr~l~-~~GIP~~lR~~vW~~llg~~~-~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d 98 (334)
T 2qq8_A 21 VLTWNNEILPNWETMWCSRKVRDLW-WQGIPPSVRGKVWSLAIGNEL-NITHELFDICLARAKERWRSLSTGGSEVENED 98 (334)
T ss_dssp HHHHHHTTGGGCC--CCCHHHHHHH-HTCCCHHHHHHHHHHHHCCTT-CCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhHHhccChHHHHHHH-HCCCCHHHHHHHHHHHhCCcc-ccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence 58998 5888888888999999987 799999999999999999863 44544444444444555555443332111110
Q ss_pred H-hhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHH
Q 008800 410 A-RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (553)
Q Consensus 410 ~-~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~ 488 (553)
. .......+...+|++||.||+|++++|.. .+++++.|+|||.+|+.+||++|||||||+|||+||+++ +|++||||
T Consensus 99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~ 176 (334)
T 2qq8_A 99 AGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIA 176 (334)
T ss_dssp --------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHH
Confidence 0 00011133456999999999999999986 456789999999999999999999999999999999998 69999999
Q ss_pred HHHHHHHhc--cCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhcccccC
Q 008800 489 FVALMERLG--PNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA 553 (553)
Q Consensus 489 f~~Lm~~~~--~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf~ 553 (553)
|++||+++. ..|..+++++...+..++.||+..+|+||+||++.++.+.+|+++||+|+|+++|.
T Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp 243 (334)
T 2qq8_A 177 FSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLP 243 (334)
T ss_dssp HHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSC
T ss_pred HHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCC
Confidence 999999764 45777889999999999999999999999999999999999999999999999983
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.2e-39 Score=338.45 Aligned_cols=205 Identities=23% Similarity=0.405 Sum_probs=177.8
Q ss_pred CHHHHHHhhhhcCC---CCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCC
Q 008800 330 GSEEWTTFLDNEGR---VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 406 (553)
Q Consensus 330 t~~~W~~~~~~~g~---~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~ 406 (553)
+.++|+++++.+|+ ..+.++||+++ ++|||+.+|+.||++|+|++++.++..++ ...++..|.++.+++..
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~~-~~GIP~~lR~~vW~~Llg~~~~~~~~~~~---~~~~~~~Y~~l~~~~~~-- 102 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQFHLKHQFPSK---QQPKDVPYKELLKQLTS-- 102 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHCCCCSS---SCCCCCCHHHHTTSCCT--
T ss_pred HHHHHHHHhccCCCCcccCCHHHHHHHH-HcCCCHHHHHHHHHHHhCcchhhhcchhh---hhhchHHHHHHHHhcCC--
Confidence 56899999998887 35889999999 68999999999999999986642221111 12345678877654321
Q ss_pred hHHHhhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHH
Q 008800 407 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 486 (553)
Q Consensus 407 ~~~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AF 486 (553)
..++|++||+||+|++++|..+.+++++.|++||.+|+.+||++|||||||+|||+||+++ +|++||
T Consensus 103 ------------~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF 169 (331)
T 3qye_A 103 ------------QQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAF 169 (331)
T ss_dssp ------------THHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHH
T ss_pred ------------chhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHH
Confidence 1248999999999999999998889999999999999999999999999999999999999 699999
Q ss_pred HHHHHHHHHh--ccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhcccccC
Q 008800 487 WCFVALMERL--GPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA 553 (553)
Q Consensus 487 w~f~~Lm~~~--~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf~ 553 (553)
|||++||+++ ..+|.+++.++..++.++..||+.++|+||+||++.++.+.+||++||+|+|+++|.
T Consensus 170 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 170 KMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp HHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred HHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 9999999874 567889999999999999999999999999999999999999999999999999973
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=324.58 Aligned_cols=196 Identities=24% Similarity=0.409 Sum_probs=171.8
Q ss_pred HHHHHHhhhhcCCCC--ChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChH
Q 008800 331 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~--~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 408 (553)
.++|.++++++++.. +.++||+++ ++|||+.+|+.||+.|+|+.+. ......|..+..+..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l~-~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~~----- 67 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTLV-KSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKDS----- 67 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHHH-HHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHHH-HCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhccC-----
Confidence 478999999877664 678999998 7999999999999999999763 113456776643211
Q ss_pred HHhhhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHH
Q 008800 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWC 488 (553)
Q Consensus 409 ~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~ 488 (553)
...++|++||.||+|++++|....+.+++.|+|||.+|+.+||++|||||||+|||+||+++ +|++||||
T Consensus 68 ---------~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~ 137 (310)
T 3hzj_A 68 ---------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCV 137 (310)
T ss_dssp ---------TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred ---------CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHH
Confidence 11248999999999999999988888999999999999999999999999999999999999 69999999
Q ss_pred HHHHHHH--hccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhcccccC
Q 008800 489 FVALMER--LGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA 553 (553)
Q Consensus 489 f~~Lm~~--~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf~ 553 (553)
|+++|++ +...|.++++++...+.+++.||+..+|+||+||++.++.+.+|+++||+|+|+++|.
T Consensus 138 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp 204 (310)
T 3hzj_A 138 LVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFP 204 (310)
T ss_dssp HHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSC
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCC
Confidence 9999987 5667888889999999999999999999999999999999999999999999999973
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=4.5e-34 Score=291.60 Aligned_cols=192 Identities=21% Similarity=0.238 Sum_probs=156.7
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHhC-C-CCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChH
Q 008800 331 SEEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (553)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~eLr~~i~~~-G-Ip~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~ 408 (553)
.+++++.+. ...+|+++||+++..+ | +|+++|+.||+.|+|+.+...... |.... .
T Consensus 20 ~~~i~~~l~--~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~--------~ 77 (292)
T 4hl4_A 20 VAEIHQALN--SDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNL--------R 77 (292)
T ss_dssp HHHHHHHHT--SSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTH--------H
T ss_pred HHHHHHHHc--CCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhh--------c
Confidence 366666764 4568999999998643 3 789999999999999987654321 11000 0
Q ss_pred HHhhhhhhhhhccccccccccCCCCCCCCCCC--CChhhhHHhhhccceeeecCCCCcccchhhhHHHHHHhcCCHHHHH
Q 008800 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSF 486 (553)
Q Consensus 409 ~~~~~~~~~e~~~~IekDV~RT~~~~~~f~~~--~~~~~~~L~~IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AF 486 (553)
...+..++|++||.||+++++.|..+ ....++.|+|||.+|+.+||++|||||||+|||+||+++ +|++||
T Consensus 78 ------~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF 150 (292)
T 4hl4_A 78 ------QMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLAT 150 (292)
T ss_dssp ------HHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHH
T ss_pred ------ccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHH
Confidence 01223458999999999999887642 244678999999999999999999999999999999999 699999
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhccccc
Q 008800 487 WCFVALMERLGP-NFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSD 552 (553)
Q Consensus 487 w~f~~Lm~~~~~-~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf 552 (553)
|||++||+...+ .|.+++.++...+.+++.+|+..+|+||+||++.++. .+||++||+|+|+++|
T Consensus 151 ~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l 216 (292)
T 4hl4_A 151 SLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVL 216 (292)
T ss_dssp HHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTS
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhc
Confidence 999999997655 4667788999999999999999999999999999995 6999999999999986
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.95 E-value=8.2e-29 Score=252.02 Aligned_cols=189 Identities=12% Similarity=0.163 Sum_probs=148.2
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHhCCCCchhHHHHHHHHhCCCCCCCcHHHHHHHHHhcHHHHHHHHHHhhhCChHHHh
Q 008800 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 411 (553)
Q Consensus 332 ~~W~~~~~~~g~~~~~~eLr~~i~~~GIp~~lR~~vW~~LLg~~~~~st~~er~~~~~~~~~~Y~~l~~~~~~~~~~~~~ 411 (553)
+..+.++. +.++|.++||+++++||||+.+|+.||++|+|+.|.+++. |+.+...++.+|++++++...
T Consensus 27 ~~~~~ll~--~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~~~~------- 95 (294)
T 3qwl_A 27 KSLEILLK--DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHALKV------- 95 (294)
T ss_dssp HHHHHHTT--SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHhc--CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHhhhh-------
Confidence 55666664 6789999999999877799999999999999999998776 577888899999999987322
Q ss_pred hhhhhhhhccccccccccCCCCCCCCCCCCChhhhHHhh--hccceeeecCCCCcccchhhhHHHHHHhcCCHHHHHHHH
Q 008800 412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRD--ILLTYSFYNFDLGYCQGMSDLLSPILFVMEDESQSFWCF 489 (553)
Q Consensus 412 ~~~~~~e~~~~IekDV~RT~~~~~~f~~~~~~~~~~L~~--IL~ay~~~npdlGYvQGM~dL~a~LL~v~~dE~~AFw~f 489 (553)
.++|+.+.++.. .|.. . -.+.+ ...+|. .+++. ++|||++|++++++++.+|++|||||
T Consensus 96 --------~r~I~~~tP~~~----vfl~---~--~~~~~~~l~~~~~-~~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f 156 (294)
T 3qwl_A 96 --------VRFVSDATPQAE----VYLR---M--YQLESGKLPRSPS-FPLEP-DDEVFLAIAKAMEEMVEDSVDCYWIT 156 (294)
T ss_dssp --------TTSCCTTSCHHH----HHHH---H--HHHHHTCCCSSTT-SCCCH-HHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred --------hhhhhccCchHH----HHHH---H--HHccccccccccc-CCccc-chhhHHHHHHHHHHHhCCHHHHHHHH
Confidence 235665333211 1110 0 01111 222221 13443 55999999999999999999999999
Q ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHHCCCCcchhhHHHHHHhcccccC
Q 008800 490 VALMERLGPNFNRDQNGMHSQLFALSKLVELLDNPLHNYFKQNDCLNYFFCFRWVLIQFKRSDA 553 (553)
Q Consensus 490 ~~Lm~~~~~~F~~~~~gm~~~l~~l~~LLq~~dP~L~~hL~~~~i~~~~f~~rWfltlFkREf~ 553 (553)
++||+++..+|.++++|++..+ +.||+.++|+||+||++.++.+.+++.+||+|+|+|||.
T Consensus 157 ~~Lm~~l~~~f~~~~~gl~~~l---~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p 217 (294)
T 3qwl_A 157 RRFVNQLNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLP 217 (294)
T ss_dssp HHHHHHHHTTTTTTGGGHHHHH---HHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSC
T ss_pred HHHHHHHHHhhCCChhHHHHHH---HHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCC
Confidence 9999999999999999998764 899999999999999999998877777999999999983
No 8
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=96.11 E-value=0.012 Score=52.96 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=76.0
Q ss_pred EEEEeeCCeEEccCCcc-cccCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCC
Q 008800 44 ELVYLKDNVTIHPTQFA-SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (553)
Q Consensus 44 ~llf~K~~V~vhpt~~~-~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g 122 (553)
.+||..++|-++....+ ...-.|.|.|+ .--|-|+|... .. -..|++||..|..+...+|.+|
T Consensus 30 ~il~~~d~V~Ly~g~~k~~~~k~G~lyLT----shRIIyv~~~~-----------~~-~~SfslPL~~v~~~e~~~~~fg 93 (145)
T 2cay_A 30 KDIFIDQSVGLYHGKSKILQRQRGRIFLT----SQRIIYIDDAK-----------PT-QNSLGLELDDLAYVNYSSGFLT 93 (145)
T ss_dssp CEEEEEEEEEEEETTEECTTCSSEEEEEE----SSEEEEEESSC-----------HH-HHCEEEEGGGEEEEEEECSSSS
T ss_pred EEEEEcCCcceecCCCCCcCCCccEEEEE----cCeEEEecCCC-----------Cc-ceEEEeEhHheeeeeEEcCccc
Confidence 68888899999887644 45677888886 33678987432 11 1248999999999999999888
Q ss_pred ceE-EEEEeC---CCCcCCceeeccCCHHHHHHHHHhcccccc
Q 008800 123 WQY-IIVVLS---SGLAFPPLYFYTGGVREFLATIKQHVLLVR 161 (553)
Q Consensus 123 ~~~-~il~~~---dG~~~P~L~F~~GG~~~fl~~L~~~~~l~r 161 (553)
+.. |++.++ .|...--|-|..||..+|.+.|.+-+.-.+
T Consensus 94 ~s~Ki~l~~~p~~~~~~~~KLsFk~GGa~eF~~~l~~al~~~~ 136 (145)
T 2cay_A 94 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATERALENIL 136 (145)
T ss_dssp SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHHHHHHHH
T ss_pred cCceEEEEecCCCCCceEEEEEEcCCCchHHHHHHHHHHHHHH
Confidence 654 666775 456678899999999999999887554433
No 9
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=94.92 E-value=0.2 Score=44.66 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=72.4
Q ss_pred EEEEeeCCeEEccCCcccccCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCc
Q 008800 44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW 123 (553)
Q Consensus 44 ~llf~K~~V~vhpt~~~~~~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~ 123 (553)
.+|+..++|-++........-.|.|.|+ .--|-|+.... . . ..+++||+.|.++...+|.+|-
T Consensus 18 ~il~~~~~V~Ly~g~~k~~~k~G~l~LT----shRli~~d~~~-~-----------~-~s~~lpl~~v~~~e~~~~~f~~ 80 (140)
T 2hth_B 18 TLVIQQRGVRIYDGEEKIKFDAGTLLLS----THRLIWRDQKN-H-----------E-CCMAILLSQIVFIEEQAAGIGK 80 (140)
T ss_dssp CEEEEEEEEEEEETTCSSCCCCEEEEEE----SSEEEEEETTC-C-----------S-CCEEEEGGGEEEEEEECCTTSS
T ss_pred eEEEEcCCEEEecCCCCCCCcCCEEEEe----cCEEEEecCCC-C-----------c-eEEEEEhHHeeeeeeecccccc
Confidence 6788889999988765556678888887 44688876432 1 1 2378999999999999997764
Q ss_pred -eEEEEEeCC-------------CCcCCceeeccCCHHHHHHHHHh
Q 008800 124 -QYIIVVLSS-------------GLAFPPLYFYTGGVREFLATIKQ 155 (553)
Q Consensus 124 -~~~il~~~d-------------G~~~P~L~F~~GG~~~fl~~L~~ 155 (553)
.-|++.++. |...--|-|+.||..+|...|..
T Consensus 81 s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~ 126 (140)
T 2hth_B 81 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSE 126 (140)
T ss_dssp CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHH
T ss_pred CceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHH
Confidence 357777764 33455799999999999999977
No 10
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=89.91 E-value=0.95 Score=38.29 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=48.8
Q ss_pred CceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCceeeccC
Q 008800 65 SGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTG 144 (553)
Q Consensus 65 ~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~il~~~dG~~~P~L~F~~G 144 (553)
.|.|.|... .|+|+|+.. +. ...++++++|...++.||+.--=-+-|++++|.++ .|+|-++
T Consensus 21 dGtL~l~~d----~i~W~p~~~-~~------------~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~-~F~Ftn~ 82 (108)
T 1pfj_A 21 DGALYLMAE----RIAWAPEGK-DR------------FTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSNE 82 (108)
T ss_dssp BCEEEEETT----EEEEECSSS-SS------------CSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEE-EEECCCS
T ss_pred CceEEEEcc----eEEEccCCC-CC------------ceEEEehhhhhcceeCCCCCccEEEEEEEeCCCce-EEEEcCc
Confidence 399999866 899999544 21 11356899999999999976656688889998776 8899887
Q ss_pred C
Q 008800 145 G 145 (553)
Q Consensus 145 G 145 (553)
+
T Consensus 83 ~ 83 (108)
T 1pfj_A 83 S 83 (108)
T ss_dssp S
T ss_pred H
Confidence 5
No 11
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=39.72 E-value=1.4e+02 Score=26.63 Aligned_cols=55 Identities=11% Similarity=0.133 Sum_probs=34.0
Q ss_pred cccCCceEEEEee-CCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEE
Q 008800 61 SERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYI 126 (553)
Q Consensus 61 ~~~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~ 126 (553)
-|.-+|+|.|.+. ++-+-+.|.|-+... .+- .+-|.=.|..-.++.+.+.|.=|+
T Consensus 43 Pd~rKG~l~l~~~ed~l~hf~W~~R~t~~-------vEd----DlIi~P~d~~F~kV~~c~tGRVyv 98 (153)
T 2r2y_A 43 PDKRKGLVYIQQTDDSLIHFCWKDRTSGT-------VED----DLIIFPDDCEFKRVPQCPSGRVYV 98 (153)
T ss_dssp ECCSCEEEEEEECTTSCEEEEEEETTTCC-------EEE----EEECCTTSEEEEECTTCTTSCEEE
T ss_pred ECCCCEEEEEEECCCCcEEEEEecCCCCC-------ccc----eEEEcCCCeEEEECCCCCCCeEEE
Confidence 3557899999984 567889999964321 011 122323566666666667776565
No 12
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=33.04 E-value=2.5e+02 Score=28.99 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=49.0
Q ss_pred cccCCceEEEEee-CCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeCCCCcCCce
Q 008800 61 SERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPL 139 (553)
Q Consensus 61 ~~~I~G~L~l~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~il~~~dG~~~P~L 139 (553)
-|.-+|+|.|.+. ++-+-++|.|-.... .+- .+-|-=.|..-.++.+.+.|.=|+ |.-+++. .-
T Consensus 44 Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~-------~Ed----dlii~P~d~~f~~V~~c~tGRVyv-LkF~ss~---~r 108 (411)
T 2kr0_A 44 PDKRKGLVYIQQTDDSLIHFCWKDRTSGN-------VED----DLIIFPDDCEFKRVPQCPSGRVYV-LKFKAGS---KR 108 (411)
T ss_dssp ECCSCEEEEEEECTTSCEEEEEEESSSCC-------EEE----EEEECTTSEEEEECTTCSSSCEEE-EEETTTC---CE
T ss_pred ecCCCcEEEEEeCCCCcEEEEEecCCCCC-------ccc----ceEEcCCceEEEECCCCCCCeEEE-EEecCCC---ce
Confidence 3568999999984 567889999954211 011 122323677677776667786665 3334422 23
Q ss_pred eeccC------CHHHHHHHHHhccc
Q 008800 140 YFYTG------GVREFLATIKQHVL 158 (553)
Q Consensus 140 ~F~~G------G~~~fl~~L~~~~~ 158 (553)
||+|= .-.++.+.+..++.
T Consensus 109 ~fFWmQe~~~~~D~~~~~~vN~ll~ 133 (411)
T 2kr0_A 109 LFFWMQEPKTDQDEEHCRKVNEYLN 133 (411)
T ss_dssp EEEEECCSCGGGHHHHHHHHHHHHH
T ss_pred eEEEecCCCcccHHHHHHHHHHHHh
Confidence 55442 22477777777665
No 13
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=27.83 E-value=2e+02 Score=24.23 Aligned_cols=55 Identities=13% Similarity=0.294 Sum_probs=40.9
Q ss_pred cCCceEEEEeeCCceeEEeeecCCCCCCccccccccCcceeeeeeCCCeeEEEEeCCCCCceEEEEEeC
Q 008800 63 RISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLS 131 (553)
Q Consensus 63 ~I~G~L~l~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~~v~ls~i~si~~~~p~~g~~~~il~~~ 131 (553)
-..|.|.|.+...=..|.|+|-.+ + . ..+|+|+.|..++--+.+..---+-|+.+
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g-~---------~----~isI~l~~It~LQqTp~ts~KvmLKI~~k 65 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDG-D---------K----VHTVVLSTIDKLQATPASSEKMMLRLIGK 65 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSS-S---------C----EEEEESTTCSEEEECCTTCSSEEEEEEEC
T ss_pred ecccEEEEccCCCcceEEEEECCC-C---------c----cEEEEhhhhhhhhcCCCCCCceEEEEEEe
Confidence 478999999888888999999544 1 1 26899999999877666655455655555
No 14
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=24.97 E-value=45 Score=32.67 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=28.5
Q ss_pred cCcceeeeeeCCCeeEEEEeCCCC----CceEEEEEeCCCCc
Q 008800 98 RNLYTIRAVPFTEVRSIRRHTPAF----GWQYIIVVLSSGLA 135 (553)
Q Consensus 98 ~~~~~~~~v~ls~i~si~~~~p~~----g~~~~il~~~dG~~ 135 (553)
..-|| ||+++|.+|++.+|.. =|.-..|.+.||..
T Consensus 163 G~Y~W---lPf~~I~~l~~~~P~~l~DlvWrpa~l~l~dG~~ 201 (273)
T 1zbp_A 163 GNYFL---VPIASINTLEIKSATSLLESVWRPVEFDIDGLGE 201 (273)
T ss_dssp SCEEE---EEGGGEEEEEECCCCSSGGGTEEEEEEEETTTEE
T ss_pred CeEEE---eeHHHhhcccccCCCcHHHhhccccEEEEecCCe
Confidence 34455 9999999999999954 37778999999886
Done!