BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008801
         (553 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
           Complexed With Malonyl-coa
 pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
           Complexed With Malonyl-coa
 pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
 pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
          Length = 454

 Score = 33.5 bits (75), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 4   INLLGNSTMKLSGRFLIPCRNASFSAF----IVIKHPNHHCLSNKSSTFCF 50
           + +LG ST +LS    IP  +   + F    I I   NHHCL + S+ FCF
Sbjct: 132 VPILGEST-RLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCF 181


>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
           Methionine Derivative
 pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
           Methionine Derivative
          Length = 454

 Score = 33.1 bits (74), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 4   INLLGNSTMKLSGRFLIPCRNASFSAF----IVIKHPNHHCLSNKSSTFCF 50
           + +LG ST +LS    IP  +   + F    I I   NHHCL + S+ FCF
Sbjct: 132 VPILGEST-RLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCF 181


>pdb|2WU8|A Chain A, Structural Studies Of Phosphoglucose Isomerase From
           Mycobacterium Tuberculosis H37rv
          Length = 549

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 377 GIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDM-- 434
           G+H +  E +A+ +TALR  R+   V DG      V A+ + + A +  +R   W     
Sbjct: 81  GVHINTSEDRAVLHTALRLPRDAELVVDGQDVVTDVHAVLDAMGAFTDRLRSGEWTGATG 140

Query: 435 KKINEI 440
           K+I+ +
Sbjct: 141 KRISTV 146


>pdb|3EXW|A Chain A, Crystal Structure Of The Human Adenovirus Type 7 Fiber
           Knob
 pdb|3EXW|B Chain B, Crystal Structure Of The Human Adenovirus Type 7 Fiber
           Knob
 pdb|3EXW|C Chain C, Crystal Structure Of The Human Adenovirus Type 7 Fiber
           Knob
          Length = 213

 Score = 30.8 bits (68), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 477 YLIG-----NLQPAHMDFRFF------TLGNLWSIVSSLGTPKQNESILNLIEAKWDDLV 525
           Y+IG     N+   H +  F       + GNL + +SSL TP  ++S  N+      +  
Sbjct: 62  YVIGVSNDFNMLTTHKNINFTAELFFDSTGNLLTSLSSLKTPLNHKSGQNMATGALTNAK 121

Query: 526 GHMPLKICYP 535
           G MP    YP
Sbjct: 122 GFMPSTTAYP 131


>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
           (Mmp1) Reveals A C-Terminal Domain Containing A
           Calcium-Linked, Four-Bladed Beta- Propeller
          Length = 370

 Score = 28.9 bits (63), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 65  ISGFQRILKDTQKPLCVFGPSCGQIRVNSRPFSVVSTKSRGLYLVASRVASNVSSFSTSV 124
           I G Q I   ++ P+   GP   Q+  +   F  ++T    L     R     +SF   V
Sbjct: 154 IDGIQAIYGPSENPVQPSGPQTPQVCDSKLTFDAITTLRGELMFFKDRFYMRTNSFYPEV 213

Query: 125 ETRVNDGNFERIY---VQNGLNVKPLVVERIDKDE 156
           E      NF  ++   V NGL       E  D+DE
Sbjct: 214 EL-----NFISVFWPQVPNGLQA---AYEIADRDE 240


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,944,316
Number of Sequences: 62578
Number of extensions: 713749
Number of successful extensions: 1272
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1268
Number of HSP's gapped (non-prelim): 8
length of query: 553
length of database: 14,973,337
effective HSP length: 104
effective length of query: 449
effective length of database: 8,465,225
effective search space: 3800886025
effective search space used: 3800886025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)