Query 008801
Match_columns 553
No_of_seqs 85 out of 116
Neff 2.9
Searched_HMMs 46136
Date Thu Mar 28 16:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12899 Glyco_hydro_100: Alka 100.0 7E-173 2E-177 1320.3 28.5 353 194-553 1-353 (436)
2 PLN03005 beta-fructofuranosida 100.0 5E-162 1E-166 1260.9 30.9 364 185-553 78-441 (550)
3 PLN02973 beta-fructofuranosida 100.0 4E-162 9E-167 1263.8 28.9 364 184-553 99-462 (571)
4 PLN02703 beta-fructofuranosida 100.0 1E-159 2E-164 1252.2 30.7 372 180-553 121-494 (618)
5 PF06202 GDE_C: Amylo-alpha-1, 99.7 2.1E-15 4.5E-20 153.0 18.3 226 227-532 28-270 (370)
6 TIGR01561 gde_arch glycogen de 99.5 1.5E-13 3.2E-18 148.3 16.2 230 227-535 290-537 (575)
7 TIGR01577 oligosac_amyl oligos 99.1 1.7E-08 3.6E-13 108.8 21.1 199 194-432 253-459 (616)
8 COG3408 GDB1 Glycogen debranch 99.0 1.5E-09 3.2E-14 119.0 12.6 185 211-433 270-464 (641)
9 TIGR01531 glyc_debranch glycog 98.7 9.4E-08 2E-12 112.0 13.1 250 224-535 1031-1351(1464)
10 PF05592 Bac_rhamnosid: Bacter 98.4 1.3E-06 2.9E-11 90.9 9.3 235 188-523 115-362 (509)
11 PF04685 DUF608: Protein of un 98.3 9.5E-07 2.1E-11 91.1 6.6 112 311-432 96-212 (365)
12 PRK10137 alpha-glucosidase; Pr 97.3 0.015 3.2E-07 66.5 19.3 271 194-519 305-681 (786)
13 TIGR01535 glucan_glucosid gluc 96.1 0.23 5E-06 56.0 17.0 158 227-433 292-449 (648)
14 PF00723 Glyco_hydro_15: Glyco 94.6 0.4 8.6E-06 50.4 11.9 196 195-426 3-224 (448)
15 PF06824 DUF1237: Protein of u 94.5 0.092 2E-06 56.7 7.2 292 207-518 29-385 (424)
16 COG3459 Cellobiose phosphoryla 93.2 2.5 5.5E-05 50.2 15.6 235 233-539 615-873 (1056)
17 COG3387 SGA1 Glucoamylase and 93.1 1.5 3.3E-05 49.2 13.4 148 226-405 281-438 (612)
18 PLN02567 alpha,alpha-trehalase 91.6 10 0.00022 42.4 17.4 224 225-519 148-436 (554)
19 PRK13271 treA trehalase; Provi 88.3 4.3 9.2E-05 45.7 11.2 106 381-530 337-442 (569)
20 COG4354 Predicted bile acid be 84.6 3.8 8.2E-05 46.7 8.4 126 299-431 416-565 (721)
21 PRK13270 treF trehalase; Provi 83.3 10 0.00022 42.6 11.1 128 354-531 322-452 (549)
22 PF01204 Trehalase: Trehalase; 75.1 35 0.00076 37.6 11.8 99 381-522 305-403 (512)
23 PRK13272 treA trehalase; Provi 74.6 28 0.0006 39.3 11.0 108 381-533 338-445 (542)
24 COG4759 Uncharacterized protei 25.2 53 0.0011 35.1 2.5 41 346-388 109-158 (316)
25 PF05164 ZapA: Cell division p 24.0 1.4E+02 0.0031 24.4 4.3 44 381-426 43-88 (89)
26 PF10925 DUF2680: Protein of u 22.2 93 0.002 25.6 2.9 25 502-526 30-54 (59)
27 PF12555 TPPK_C: Thiamine pyro 21.2 75 0.0016 25.4 2.1 37 490-526 17-53 (53)
28 PF07849 DUF1641: Protein of u 20.5 77 0.0017 24.3 1.9 17 336-352 20-36 (42)
No 1
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=100.00 E-value=7.4e-173 Score=1320.29 Aligned_cols=353 Identities=71% Similarity=1.266 Sum_probs=347.4
Q ss_pred HHHHHHHHhhhhhcCceeEEEeecCCCCCCCCCCCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhhccccCC
Q 008801 194 EAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSP 273 (553)
Q Consensus 194 eAwe~l~~siV~y~g~PvGTvAA~D~~~~~alNYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~ 273 (553)
||||+|++|+|+|||+|||||||+||+.+++|||+||||||||||||+|||+||+|||||||++||+|||+||++|||+|
T Consensus 1 ~a~~~l~~s~v~~~g~pvGtvAa~d~~~~~~lNY~qvF~RDfvps~l~fL~~g~~eIVrnFL~~tl~Lq~~~~~~d~~~~ 80 (436)
T PF12899_consen 1 EAWELLERSIVYYQGQPVGTVAALDPSAEEALNYDQVFVRDFVPSALAFLMKGEPEIVRNFLLETLQLQSWEKQVDCFKP 80 (436)
T ss_pred ChHHHHhhheEeeCCceeeeeeecCCcccccccccceEeecChHHHHHHHHcCCHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 69999999999999999999999999877899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceEEEeeccCCCCCccccccCCccccccccccccccccHHHHHHHHHhhccccchhccchhhHHHHHHHHHHhh
Q 008801 274 GQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCL 353 (553)
Q Consensus 274 g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~AIGRVapVDSgLWWIILlraY~k~TGD~sla~~pevQrGirlIL~lCL 353 (553)
|+|+|||||||.+++ ++|+|+|||||+|||||||||||||||||||||+|+|||++|+++||||+||||||+|||
T Consensus 81 g~G~mPaSFkv~~~~-----~~e~l~aDfGe~AIgRv~pVDs~~WWiillraY~k~tgD~s~~~~~~~Q~gi~liL~lcL 155 (436)
T PF12899_consen 81 GRGVMPASFKVLHEN-----EEETLIADFGERAIGRVAPVDSGLWWIILLRAYVKATGDYSLAESPEVQRGIRLILDLCL 155 (436)
T ss_pred CCCcccceEEEecCC-----CCceEecCcchhhhccccCcccccHHHHHHHHHHHHhcchhhhhcHHHHHHHHHHHHHHc
Confidence 999999999998643 789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCceeecCCccccccccccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccc
Q 008801 354 ADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVD 433 (553)
Q Consensus 354 ~~~Fd~fPtLlVpDg~~MIDRRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD 433 (553)
+++||||||||||||||||||||||||||||||||||+|||||++||+++++ +++++++|++||++|++|||+|||||
T Consensus 156 ~~~Fd~~PtLlvpDg~~MiDRrMgv~G~PlEiQ~Lf~~aLr~a~~ll~~~~~--~~~~~~~i~~rl~~L~~h~r~~yWld 233 (436)
T PF12899_consen 156 ADGFDMFPTLLVPDGACMIDRRMGVYGHPLEIQALFYMALRCARELLKPDEE--GKDLIERIDKRLHALSFHIREYYWLD 233 (436)
T ss_pred ccccCCCceEEecCCceeecccccccCCcchHHHHHHHHHHHHHHhcCcccc--hhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999998766 89999999999999999999999999
Q ss_pred hhhhhhhhccCCcccchhhhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHHHHH
Q 008801 434 MKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESI 513 (553)
Q Consensus 434 ~~~ln~IyRykTEeYs~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs~aI 513 (553)
+++||+||||||||||++|+|||||||||||+||+||||++||||+|||+|+|||||||+|||||||||||||++|+++|
T Consensus 234 ~~~ln~iyr~~teey~~~a~N~fNi~p~~ip~wl~dwlp~~gGY~ignv~P~~~dfRff~lGNlLAiLsgLat~~qa~~I 313 (436)
T PF12899_consen 234 LKRLNEIYRYKTEEYGHTAVNKFNIYPDSIPDWLFDWLPEKGGYFIGNVSPARMDFRFFSLGNLLAILSGLATPEQAEAI 313 (436)
T ss_pred HHHHHHHHhccHhhhhhhhhhcccCCcccchHHHHHhcccCCceeEeeccccccceeehhhhhHHHHHhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCceecccCCCCCCceeeeCCCCCCC
Q 008801 514 LNLIEAKWDDLVGHMPLKICYPALESEDWRIITGSDPKNT 553 (553)
Q Consensus 514 m~Lie~rW~dLvg~MPlKICyPAle~~EWRiiTG~DPKNt 553 (553)
|++||++|++|+|+||||||||||+++|||++|||||||+
T Consensus 314 ~~lIe~~~~~L~g~mPlki~yPale~~eWri~tg~dpKN~ 353 (436)
T PF12899_consen 314 MDLIEERWEDLVGPMPLKICYPALEGEEWRIYTGCDPKNT 353 (436)
T ss_pred HHHHHHHHhhhccccchhhccCCCCCCCCccccCcCcCcc
Confidence 9999999999999999999999999999999999999996
No 2
>PLN03005 beta-fructofuranosidase
Probab=100.00 E-value=5.3e-162 Score=1260.90 Aligned_cols=364 Identities=58% Similarity=1.055 Sum_probs=356.0
Q ss_pred cccccHHHHHHHHHHHHhhhhhcCceeEEEeecCCCCCCCCCCCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhchh
Q 008801 185 KREETEIEKEAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSW 264 (553)
Q Consensus 185 ~~~~~~li~eAwe~l~~siV~y~g~PvGTvAA~D~~~~~alNYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ 264 (553)
..+.|+++++||++|++|+|+|||+||||+||.|++..+++||+|||+||||||||+||++||+|||||||++||+||+|
T Consensus 78 ~~~~~~~~~~a~~~l~~s~v~~~g~pvGtvAA~d~~~~~~lNY~qvF~RDfvpsaLafLl~Ge~eIVrnFl~~~L~Lq~~ 157 (550)
T PLN03005 78 SFEPHPMMAEAWEALRRSMVFFRGQPVGTLAAVDNTTDEVLNYDQVFVRDFVPSALAFLMNGEPDIVKHFLLKTLQLQGW 157 (550)
T ss_pred CCCCCcHHHHHHHHHHhheEEECCccceeeeecCCccccccCCCceeecccHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999999999999999644679999999999999999999999999999999999999999
Q ss_pred hhhccccCCCCCcccceEEEeeccCCCCCccccccCCccccccccccccccccHHHHHHHHHhhccccchhccchhhHHH
Q 008801 265 EKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTG 344 (553)
Q Consensus 265 ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~AIGRVapVDSgLWWIILlraY~k~TGD~sla~~pevQrG 344 (553)
||++|||++|+|+|||||||.+++++ ++++|+||||++||||||||||+||||||||||+|+|||++|+++|+||||
T Consensus 158 ek~~d~~q~g~G~mPaSfkv~~~p~~---~~~~l~aDfG~~aIGRv~pVDS~LWWIIllraY~k~tgD~s~~e~pevQrg 234 (550)
T PLN03005 158 EKRVDRFKLGEGVMPASFKVLHDPIR---ETDNIVADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLTLSETPECQKG 234 (550)
T ss_pred hhhhhcccCCCCCcCceeeecccccC---CCccccccccccccccccccchhhHHHHHHHHHHhhccchhhhhChHHHHH
Confidence 99999999999999999999998654 567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCceeecCCccccccccccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH
Q 008801 345 IKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSF 424 (553)
Q Consensus 345 irlIL~lCL~~~Fd~fPtLlVpDg~~MIDRRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~ 424 (553)
|+|||+|||+++|||||||+||||||||||||||||||||||||||+|||||++||+++++ +++++++|.+||++|++
T Consensus 235 i~lil~lcLa~~Fd~~ptLlvpDgs~miDRrMgv~G~pLeiQaLfy~ALR~~~~~L~~~~~--~~~~i~~i~~rl~~L~~ 312 (550)
T PLN03005 235 MKLILSLCLAEGFDTFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMALRSALSMLKPDGD--GREFIERIVKRLHALSF 312 (550)
T ss_pred HHHHHHHhcccccCCCceEeccCCccccccccccCCccHHHHHHHHHHHHHHHHhcCccch--hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999766 89999999999999999
Q ss_pred hhhhhcccchhhhhhhhccCCcccchhhhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhcC
Q 008801 425 HIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSL 504 (553)
Q Consensus 425 hir~yYWlD~~~ln~IyRykTEeYs~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILssL 504 (553)
|||+|||||++++|+||||||||||++|+|||||||||||+||+||||++||||+|||+|+|||||||+|||||||||||
T Consensus 313 h~r~yyWld~~~ln~iyr~kteey~~~a~NkfNi~pd~ip~wl~dwlp~~gGY~igNv~pa~~dfRffslGNllAILs~L 392 (550)
T PLN03005 313 HMRNYFWLDHQNLNDIYRFKTEEYSHTAVNKFNVMPDSIPEWVFDFMPLRGGYFVGNVGPAHMDFRWFALGNCVSILSSL 392 (550)
T ss_pred HHHHheecchhhhhhhhhccHhhhchhhhhccccCCccchhhhhhhcccCCceeeeecccccCCceehhhhhHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhhcCCCceecccCCCCCCceeeeCCCCCCC
Q 008801 505 GTPKQNESILNLIEAKWDDLVGHMPLKICYPALESEDWRIITGSDPKNT 553 (553)
Q Consensus 505 at~~Qs~aIm~Lie~rW~dLvg~MPlKICyPAle~~EWRiiTG~DPKNt 553 (553)
||++|+++||+|||+||++|+|+|||||||||+|++|||++|||||||+
T Consensus 393 at~~Qs~aIm~lIe~~w~~Lv~~MPlkIcyPa~e~~eWri~tG~dpKN~ 441 (550)
T PLN03005 393 ATPDQSMAIMDLLEHRWEELVGEMPLKICYPCLEGHEWRIVTGCDPKNT 441 (550)
T ss_pred CCHHHHHHHHHHHHHHHHHHhccCCcceeecccCCccceecccCCCCCC
Confidence 9999999999999999999999999999999999999999999999997
No 3
>PLN02973 beta-fructofuranosidase
Probab=100.00 E-value=4.4e-162 Score=1263.81 Aligned_cols=364 Identities=58% Similarity=1.084 Sum_probs=356.8
Q ss_pred ccccccHHHHHHHHHHHHhhhhhcCceeEEEeecCCCCCCCCCCCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhch
Q 008801 184 TKREETEIEKEAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQS 263 (553)
Q Consensus 184 ~~~~~~~li~eAwe~l~~siV~y~g~PvGTvAA~D~~~~~alNYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs 263 (553)
.+.+.|+++++||++|++|+|+|||+|||||||.||+ ++++||+|||+||||||||+||++||+|||||||++||+||+
T Consensus 99 ~~~~~~~~~~~aw~~l~~s~v~~~g~pvgtvAa~d~~-~~~lNY~qVFiRDfVpsaLafLl~Ge~eIVrnFl~~TL~lq~ 177 (571)
T PLN02973 99 PGFESHPMVGEAWDALRRSMVYFRGQPVGTIAAVDNS-EEKLNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLRLQS 177 (571)
T ss_pred ccCCCCcHHHHHHHHHHhheEEECCeeeeeeeccCCc-cccccCcchhhhccHHHHHHHHHCCCHHHHHHHHHHHHhhhh
Confidence 3578899999999999999999999999999999996 479999999999999999999999999999999999999999
Q ss_pred hhhhccccCCCCCcccceEEEeeccCCCCCccccccCCccccccccccccccccHHHHHHHHHhhccccchhccchhhHH
Q 008801 264 WEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQT 343 (553)
Q Consensus 264 ~ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~AIGRVapVDSgLWWIILlraY~k~TGD~sla~~pevQr 343 (553)
|||+||||++|+|+|||||||.+++++ ++|+++||||++||||||||||+||||||||||+|+|||++|+++|+|||
T Consensus 178 ~ektld~~q~g~G~mPaSfkv~~~p~~---~~e~l~aDfG~~aIGRV~pVDS~LWWIIllraY~k~TgD~s~~e~pevQr 254 (571)
T PLN02973 178 WEKKIDRFQLGEGVMPASFKVFHDPVR---NHETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLADMPECQK 254 (571)
T ss_pred hHHHHHhcccCCCCcCceeeecccccC---ccccccccccccccccccccchhhHHHHHHHHHHHhccchhhhhcHHHHH
Confidence 999999999999999999999998754 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCceeecCCccccccccccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHH
Q 008801 344 GIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALS 423 (553)
Q Consensus 344 GirlIL~lCL~~~Fd~fPtLlVpDg~~MIDRRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs 423 (553)
||+|||+|||+++|||||||+||||||||||||||||||||||||||+|||||++||+++++ +++++++|++||++|+
T Consensus 255 gi~lil~lcL~~~Fd~~ptLlVpDgs~miDrrMgv~G~pLeiQaLfy~ALR~a~~~L~~~~~--~~~~i~~i~~rl~~L~ 332 (571)
T PLN02973 255 GIRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALLLLKHDGE--GKEMVEQIVKRLHALS 332 (571)
T ss_pred HHHHHHHHhcccccCCCceEeccCCccccccccccCCccHHHHHHHHHHHHHHHHhcCccch--hHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998766 8999999999999999
Q ss_pred HhhhhhcccchhhhhhhhccCCcccchhhhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhc
Q 008801 424 FHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSS 503 (553)
Q Consensus 424 ~hir~yYWlD~~~ln~IyRykTEeYs~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILss 503 (553)
+|||+|||+|++++|+||||||||||++|+|||||||||||+||+||||.+||||+|||+|+|||||||+||||||||||
T Consensus 333 ~hir~~ywld~~~ln~iyRykteey~~~a~NkfNi~p~sip~wl~dwlp~~gGY~igNv~Pa~~DfRffslGNllAILs~ 412 (571)
T PLN02973 333 YHMRSYFWLDLKQLNDIYRYKTEEYSHTAVNKFNVIPDSLPEWVFDFMPPHGGFFIGNVSPARMDFRWFALGNCIAILSS 412 (571)
T ss_pred HHHHHHHhcCHHHhhhHhhcchhhcchhhhhhccCCccccchhhhhhccCCCceeeeecccccCCcchhhhhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhcCCCceecccCCCCCCceeeeCCCCCCC
Q 008801 504 LGTPKQNESILNLIEAKWDDLVGHMPLKICYPALESEDWRIITGSDPKNT 553 (553)
Q Consensus 504 Lat~~Qs~aIm~Lie~rW~dLvg~MPlKICyPAle~~EWRiiTG~DPKNt 553 (553)
|||++|+++||||||+||+||+|+|||||||||||++|||++|||||||+
T Consensus 413 Lat~~Qs~aIm~lIe~~w~~Lvg~MPlkicyPaie~~EWri~tG~dpKN~ 462 (571)
T PLN02973 413 LATPEQSTAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIVTGCDPKNT 462 (571)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCcceeccCcCCccceehhccCCCCC
Confidence 99999999999999999999999999999999999999999999999997
No 4
>PLN02703 beta-fructofuranosidase
Probab=100.00 E-value=9.5e-160 Score=1252.17 Aligned_cols=372 Identities=77% Similarity=1.316 Sum_probs=362.5
Q ss_pred cCccccccccHHHHHHHHHHHHhhhhhcCceeEEEeecCCCCCCCCCCCceeeccchHHHHHHHhcCChHHHHHHHHhhh
Q 008801 180 EGVRTKREETEIEKEAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTL 259 (553)
Q Consensus 180 ~g~~~~~~~~~li~eAwe~l~~siV~y~g~PvGTvAA~D~~~~~alNYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tL 259 (553)
+|...+.+.++++++||++|++|+|+|||+||||+||.|+...+++||+|||+||||||||+||++||+|||||||++||
T Consensus 121 ~~~~~~~~~~~~~~eA~elL~~s~v~~~g~pvGtvAA~d~~~~~~lNY~qVFiRDfVpsaLafLl~Ge~eIVrnFl~~tL 200 (618)
T PLN02703 121 NGNAQSVGTKSIEDEAWDLLRQSVVFYCGSPIGTIAANDPSSTSVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILYTL 200 (618)
T ss_pred CCcccccCCChHHHHHHHHHHHhhhhhcCccceeEeccCCccccccCCCceeecccHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33346888999999999999999999999999999999996546799999999999999999999999999999999999
Q ss_pred hhchhhhhccccCCCCCcccceEEEeeccCCCCC--ccccccCCccccccccccccccccHHHHHHHHHhhccccchhcc
Q 008801 260 QLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNK--FEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQE 337 (553)
Q Consensus 260 qLQs~ek~ld~~~~g~GlmPASFkV~~~~~~~~~--~ee~l~aDFGe~AIGRVapVDSgLWWIILlraY~k~TGD~sla~ 337 (553)
+||+|||+||||++|+|+|||||||.++++++++ +||+|+|||||+|||||+||||+||||||||||+|+|||++|++
T Consensus 201 ~lq~~ektld~~q~g~G~mPaSfkv~~~~~~~~~~~~ee~l~aDfGe~AIgRV~pVDS~LWWIIllraY~k~TgD~sf~e 280 (618)
T PLN02703 201 QLQSWEKTMDCHSPGQGLMPCSFKVKTVPLDGDDSMTEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCTGDLSVQE 280 (618)
T ss_pred hhhhhHHHHHhccCCCCCcCceeeecccccccccccccccccCCcCccceeeeccccchhHHHHHHHHHHHhhccHHHhh
Confidence 9999999999999999999999999999887764 88999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhhcCCCCCCceeecCCccccccccccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHH
Q 008801 338 RVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINN 417 (553)
Q Consensus 338 ~pevQrGirlIL~lCL~~~Fd~fPtLlVpDg~~MIDRRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~ 417 (553)
+|+||+|||+||+|||+++|||||||+||||||||||||||||||||||||||+|||||++||+++++ +++++++|.+
T Consensus 281 ~~~~Q~gI~liL~LcLa~~Fd~fPtLlVpDgs~miDRrMgv~G~PLEiQaLfy~ALR~a~~~L~~~~~--~~e~i~~i~~ 358 (618)
T PLN02703 281 RVDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALVCAREMLTPEDG--SVDLIRALNN 358 (618)
T ss_pred hhhHHHHHHHHHHHHccCcCCCCceEeccCCCchhccccCcCCccHHHHHHHHHHHHHHHHhcCccch--HHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999766 8999999999
Q ss_pred HHHHHHHhhhhhcccchhhhhhhhccCCcccchhhhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhH
Q 008801 418 RLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNL 497 (553)
Q Consensus 418 RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNl 497 (553)
||++|++|||+|||+|++++|+||||||||||++|+|||||||++||+||+||||++||||||||+|+|||||||+|||+
T Consensus 359 rl~~L~~hir~~yWld~~~ln~iyRykteey~~~A~NkfNi~p~siP~WL~dwlp~~gGYligNv~Pa~mDfRffsLGNl 438 (618)
T PLN02703 359 RLVALNFHIREYYWLDLKKINEIYRYQTEEYSYDAVNKFNIYPDQIPSWLVDFMPNRGGYLIGNLQPAHMDFRFFTLGNL 438 (618)
T ss_pred hhhhhHHHHHHHHhhcHHHhhHHHhhhhhhcchhhhhhcccCCCCcchHhhhhccccCceeeeeecccccccchhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCceecccCCCCCCceeeeCCCCCCC
Q 008801 498 WSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKICYPALESEDWRIITGSDPKNT 553 (553)
Q Consensus 498 lAILssLat~~Qs~aIm~Lie~rW~dLvg~MPlKICyPAle~~EWRiiTG~DPKNt 553 (553)
|||||||||++|+++||||||+||+||+|+|||||||||||++|||++|||||||+
T Consensus 439 LAILs~Lat~~Qs~aIm~lIe~~w~~Lvg~MPlkIcyPaie~~EWRi~TG~DpKN~ 494 (618)
T PLN02703 439 WSIVSSLATNDQSHAILDLIEAKWAELVADMPLKICYPAMEGEEWRIITGSDPKNT 494 (618)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHhccCccccccCCcCCccceeeeCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999997
No 5
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=99.67 E-value=2.1e-15 Score=153.05 Aligned_cols=226 Identities=25% Similarity=0.347 Sum_probs=151.4
Q ss_pred CCceeeccchHHHH-HHHhcCChHHHHHHHHhhhhhchhhhhccccCCCCCcccceEEEeeccCCCCCccccccCCcccc
Q 008801 227 YDQVFIRDFVPSAL-AFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGES 305 (553)
Q Consensus 227 YdQVFiRDfVPSaL-afLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~ 305 (553)
|.. |-||-.+|.= .+|..|.++..|++|..-.+.|. .|+||..|.. ++ .|.|
T Consensus 28 F~~-~GRDt~Isl~gl~l~~~~~~~a~~~L~~~~~~~~-----------~G~ipn~~~~---------~~---~~~Y--- 80 (370)
T PF06202_consen 28 FST-WGRDTFISLPGLLLSPGRFEEARNILATFAGTQR-----------HGLIPNELRD---------GE---EPRY--- 80 (370)
T ss_pred ccc-cccHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh-----------cCcccCcccC---------CC---CCCC---
Confidence 334 9999888621 24778999999997765444332 8999999842 00 1344
Q ss_pred ccccccccccccHHHHHHHHHhhccccchhccc--hhhHHHHHHHHHHhhhcCCCCC-CceeecCCc-ccccccccc---
Q 008801 306 AIGRVAPVDSGLWWIILLRAYGKITGDYALQER--VDVQTGIKLIMNLCLADGFDMF-PSLLVTDGS-CMIDRRMGI--- 378 (553)
Q Consensus 306 AIGRVapVDSgLWWIILlraY~k~TGD~sla~~--pevQrGirlIL~lCL~~~Fd~f-PtLlVpDg~-~MIDRRMgv--- 378 (553)
.+||+.+|||++++-|.+.|||.+|.+. |.+++.|+++.+--- .+..+. .+-|+.-|. ..=.-+||+
T Consensus 81 -----~s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~-~~~~~d~~~gl~~~~~~~~~~tWmD~~~~ 154 (370)
T PF06202_consen 81 -----NSVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTD-FGIRVDPEDGLIYSGNGLNNQTWMDARND 154 (370)
T ss_pred -----CCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCC-CccccccCCCeeecCCCCCCCCccccccC
Confidence 4789999999999999999999999975 777777776644111 011222 122222221 222234442
Q ss_pred -------CCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCcccchh
Q 008801 379 -------HGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTD 451 (553)
Q Consensus 379 -------~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~ 451 (553)
.|+|.|||+|+|.||+++.+|.....++ .+....++-..|+..+.++||.
T Consensus 155 g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~----~a~~~~~~A~~lk~~F~~~FW~------------------- 211 (370)
T PF06202_consen 155 GRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDE----LAARYREWAERLKESFEKRFWD------------------- 211 (370)
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCc----hHHHHHHHHHHHHHHHHHHHcC-------------------
Confidence 3678999999999999999998853331 4455555555667777888987
Q ss_pred hhcccCcCCCCcchhhhhccCCCCCeeeeeccC-Ccccchhhh-hhhHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCC
Q 008801 452 ATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQP-AHMDFRFFT-LGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMP 529 (553)
Q Consensus 452 a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P-~rmDFRfFs-LGNllAILssLat~~Qs~aIm~Lie~rW~dLvg~MP 529 (553)
++.||+.--|.+ ...|...-+ .+-.+++.+++++++|++.+++.+ .++|..+.=
T Consensus 212 ---------------------~~~g~~~d~ld~~~~~d~~irpN~~~a~~L~~~~l~~~~a~~vl~~~---~~~L~tp~G 267 (370)
T PF06202_consen 212 ---------------------EDRGYYADALDGDKEPDDSIRPNQLIALSLPPGLLDPEQAKKVLDRV---EEELLTPWG 267 (370)
T ss_pred ---------------------CCCCEEEEEecCCCCCCcccccCchhHHhcCCccCCHHHHHHHHHHH---HHHcCCCCc
Confidence 445666666665 345542222 233556678999999999999987 458888776
Q ss_pred cee
Q 008801 530 LKI 532 (553)
Q Consensus 530 lKI 532 (553)
+|=
T Consensus 268 lRT 270 (370)
T PF06202_consen 268 LRT 270 (370)
T ss_pred hhc
Confidence 654
No 6
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=99.53 E-value=1.5e-13 Score=148.29 Aligned_cols=230 Identities=20% Similarity=0.248 Sum_probs=142.9
Q ss_pred CCceeeccchHHHHHHHh-cCChHHHHHHHHhhhhhchhhhhccccCCCCCcccceEEEeeccCCCCCccccccCCcccc
Q 008801 227 YDQVFIRDFVPSALAFLL-KGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGES 305 (553)
Q Consensus 227 YdQVFiRDfVPSaLafLl-~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~ 305 (553)
+=.+|-||-.+|.-++++ .|++|..|+-|..-.+.+ ..|+||..|. + . +. .|-|
T Consensus 290 wF~~WGRDt~Isl~Gl~l~tgr~~~A~~iL~~fa~~~-----------~~GliPN~~~---~----~-g~---~p~Y--- 344 (575)
T TIGR01561 290 WFDDWGRDSFISLEGLLLIDKQFDEAKEAILKFANLC-----------KRGLIPNNFI---A----F-GG---DPIY--- 344 (575)
T ss_pred hhccchhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh-----------HCCCCCCccC---C----C-CC---CccC---
Confidence 345799999999987766 899999999554332222 4899999992 1 0 11 2445
Q ss_pred ccccccccccccHHHHHHHHHhhccccchhccc--hhhHHHHHHHHHHhhhcCCCC--CCceeecCCccccccccc----
Q 008801 306 AIGRVAPVDSGLWWIILLRAYGKITGDYALQER--VDVQTGIKLIMNLCLADGFDM--FPSLLVTDGSCMIDRRMG---- 377 (553)
Q Consensus 306 AIGRVapVDSgLWWIILlraY~k~TGD~sla~~--pevQrGirlIL~lCL~~~Fd~--fPtLlVpDg~~MIDRRMg---- 377 (553)
..||+.||||++++.|.+.|||..+.+. |.++.-|+. .+...+|.. .+..|+--|.- -.+||
T Consensus 345 -----ntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~---y~~G~~~~i~~d~dGLi~~g~~--lTWMDa~~g 414 (575)
T TIGR01561 345 -----NGVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDN---YCAGNDFAIGMDNDLIFHKGAP--LTWMDAKVD 414 (575)
T ss_pred -----CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---HhcCCCcEEEECCCccEeCCCC--CCCCCCCCC
Confidence 3899999999999999999999988764 554444443 333445432 22122211110 13676
Q ss_pred ------cCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCcccchh
Q 008801 378 ------IHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTD 451 (553)
Q Consensus 378 ------v~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~ 451 (553)
..|+|.|||||||.||+.+.+|.+...+ +.. ...+.-..|+.-+.++||..-. .|=.+
T Consensus 415 ~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~-~a~----~y~~~A~~lk~~F~~~FW~~~~-----------g~l~D 478 (575)
T TIGR01561 415 ERAVTPRAGAACEINALWYNALKTAEFLGNELGE-DAE----SLEEKAAGVAKNFAEKFINPDG-----------NCLFD 478 (575)
T ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCc-cHH----HHHHHHHHHHHHHHHhcCCCCC-----------CeeEE
Confidence 5899999999999999999999876422 122 2222233345556677887521 11111
Q ss_pred hhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHH--hcCCCHH-HHHHHHHHHHHHhhhhhcCC
Q 008801 452 ATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIV--SSLGTPK-QNESILNLIEAKWDDLVGHM 528 (553)
Q Consensus 452 a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAIL--ssLat~~-Qs~aIm~Lie~rW~dLvg~M 528 (553)
+++.= -....++|+ -++| +.++|+- +++.+++ |++++++++ +++|..+.
T Consensus 479 ~v~~d-~~~~~~~d~--------------s~RP----------Nql~A~sL~~~ll~~~~~~~~vl~~v---~~~Lltp~ 530 (575)
T TIGR01561 479 LIHQD-EAGNQVKDK--------------AIRP----------NQIFAISLPFPIIDDESIAKAILDLI---EKDLLRPF 530 (575)
T ss_pred EEecC-CCCCccccc--------------ccCC----------CceeHhhCCCCCCCHHHHHHHHHHHH---HhhccCCc
Confidence 11100 000000010 1222 3456662 6899999 999999988 66899998
Q ss_pred Cceeccc
Q 008801 529 PLKICYP 535 (553)
Q Consensus 529 PlKICyP 535 (553)
=||=.=|
T Consensus 531 GlRTLsp 537 (575)
T TIGR01561 531 GLKSLSR 537 (575)
T ss_pred ccccCCC
Confidence 8886655
No 7
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=99.05 E-value=1.7e-08 Score=108.84 Aligned_cols=199 Identities=17% Similarity=0.217 Sum_probs=126.6
Q ss_pred HHHHHHHHhhhhh---cCceeE-EEeecCCCCCCCC--CCCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhh
Q 008801 194 EAWRLLQEAVVTY---CESPIG-TVAANDPGDKQPL--NYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKT 267 (553)
Q Consensus 194 eAwe~l~~siV~y---~g~PvG-TvAA~D~~~~~al--NYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ 267 (553)
+-|+++++|++.. ...+-| .|||.+.+....- .|.-||+||.+-++++++..|.+|.+|.||.-+++.|..
T Consensus 253 ~~~~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~~~a~~~l~~l~~~q~~--- 329 (616)
T TIGR01577 253 KIYSLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYHDRVDRFFRWAMQTQSR--- 329 (616)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCHHHHHHHHHHHHHhhCc---
Confidence 5567777886554 233324 5666443211112 399999999999999999999999999999999988763
Q ss_pred ccccCCCCCcccceEEEeeccCCCCCccccccCCccccccccccccccccHHHHHHHHHhhccccchhccc--hhhHHHH
Q 008801 268 VDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQER--VDVQTGI 345 (553)
Q Consensus 268 ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~AIGRVapVDSgLWWIILlraY~k~TGD~sla~~--pevQrGi 345 (553)
.|-.|..+.+...+. . ....+..| .+|. -|| +++.|.+.|||..|.+. +.+++++
T Consensus 330 -------~G~~~~~~~~dG~~~-~--~~~~~Q~D----~~g~------~l~---al~~y~~~t~d~~~~~~~~~~v~~a~ 386 (616)
T TIGR01577 330 -------DGSWQQRYYLNGRLA-P--LQWGLQID----ETGS------ILW---AMDQHYRLTNDRAFLEEIWESVQKAA 386 (616)
T ss_pred -------CCCcceEEecCCCCC-C--CCCCcccc----chhH------HHH---HHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 455566664322100 0 00011222 1222 234 78889999999998764 6677777
Q ss_pred HHHHHHhhhcCCCCCCceeecCCccccccccccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHh
Q 008801 346 KLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFH 425 (553)
Q Consensus 346 rlIL~lCL~~~Fd~fPtLlVpDg~~MIDRRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~h 425 (553)
+.+++.-- + .|-.||-. +-..| +|++.+..+++|.||++|.+|.+...+ .+.++...+.-..++..
T Consensus 387 ~fl~~~~~-~------~l~~~~~~-lWEer---~G~~~~t~a~~~aAL~~aa~lA~~lGd---~~~a~~~~~~Ad~ik~~ 452 (616)
T TIGR01577 387 QYLILFID-P------ETPLPCRD-LWEER---EGVFTYTASAVYGGLDAAAAVADKLGE---KRLAQNWKKAAEFIKRA 452 (616)
T ss_pred HHHHHhcc-C------CCCCCCCc-cceec---CCccCccHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHH
Confidence 76655321 1 12223332 22333 467888999999999999999997543 23445555555556777
Q ss_pred hhhhccc
Q 008801 426 IREYYWV 432 (553)
Q Consensus 426 ir~yYWl 432 (553)
|++++|.
T Consensus 453 i~~~~w~ 459 (616)
T TIGR01577 453 VEERFWL 459 (616)
T ss_pred HHHhccC
Confidence 7888885
No 8
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=99.04 E-value=1.5e-09 Score=119.00 Aligned_cols=185 Identities=26% Similarity=0.319 Sum_probs=131.6
Q ss_pred eEEEeecCCCCCCCCCCCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhhccccCCCCCcccceEEEeeccCC
Q 008801 211 IGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLE 290 (553)
Q Consensus 211 vGTvAA~D~~~~~alNYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~g~GlmPASFkV~~~~~~ 290 (553)
.+.+|..+- +-=|. +|=||...|++++|+-|++|+.|.=|..-++. ...|.||-.| ....+
T Consensus 270 ~~~~Ag~P~----~~WF~-~fGRD~lIS~lgll~~g~~elArg~L~~~a~~-----------~~~GkIPhe~---~~~~~ 330 (641)
T COG3408 270 PGLYAGLPI----AHWFS-PFGRDTLISALGLLLVGRFELARGTLNTLARY-----------SEPGKIPHEI---LLSIP 330 (641)
T ss_pred cceEecCCc----chhcc-ccchHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----------ccCCCCcchh---hhcCC
Confidence 455666431 12355 99999999999999999999999944444333 3589999988 11101
Q ss_pred CCCccccccCCccccccccccccccccHHHHHHHHHhhccccchhccc--hhhHHHHHHHHHHhhhcCCCCCCceeecCC
Q 008801 291 SNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQER--VDVQTGIKLIMNLCLADGFDMFPSLLVTDG 368 (553)
Q Consensus 291 ~~~~ee~l~aDFGe~AIGRVapVDSgLWWIILlraY~k~TGD~sla~~--pevQrGirlIL~lCL~~~Fd~fPtLlVpDg 368 (553)
+ +|=|| +||+.+|||+++.+|.+.|||..+.+. +.++.++++++.---.. |+++...+..+|
T Consensus 331 ---~----~~~Y~--------tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~~~~~~-~~~~~~~l~~~~ 394 (641)
T COG3408 331 ---G----EPYYN--------TVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWILKGFDFG-FDTYGDGLLEGG 394 (641)
T ss_pred ---C----cceec--------cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCcc-ceecCcccccCC
Confidence 1 14454 999999999999999999999999996 99999999987765333 788888888875
Q ss_pred cc--------ccccccccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccc
Q 008801 369 SC--------MIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVD 433 (553)
Q Consensus 369 ~~--------MIDRRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD 433 (553)
.+ =+=..++..|-|++|++|+|.|+.++..++.....++..+..+++.+|| .+-..+.||..
T Consensus 395 ~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~~~~~~~~a~~l---~~~F~~~fw~~ 464 (641)
T COG3408 395 SNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEEDAARLEKIARRL---KESFEAKFWNP 464 (641)
T ss_pred CCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH---HHHHHHHhhCc
Confidence 52 2223455578899999999988888887777644111222334444444 33356778885
No 9
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=98.72 E-value=9.4e-08 Score=112.04 Aligned_cols=250 Identities=20% Similarity=0.278 Sum_probs=146.4
Q ss_pred CCCCCceeeccchHHHHH-HHhcCChHHHHHHHHhhhhhchhhhhccccCCCCCcccceEEEeeccCCCCCccccccCCc
Q 008801 224 PLNYDQVFIRDFVPSALA-FLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDF 302 (553)
Q Consensus 224 alNYdQVFiRDfVPSaLa-fLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDF 302 (553)
+..|--||=||-.+|.=+ +|..|++|..|+-|+.- .+. ...|+||..|. +
T Consensus 1031 ~tg~mr~WGRDTfISLrGLlL~tGR~~eAk~ii~~f---a~~--------lr~GLIPNll~-----------------~- 1081 (1464)
T TIGR01531 1031 SVGYMRCWGRDTFIALRGMLLTTGRFDEARAIILAF---AGT--------LRHGLIPNLLD-----------------E- 1081 (1464)
T ss_pred ccCcccccchhheeecCcceeccCCHHHHHHHHHHH---HHH--------HHcCCCCCCCC-----------------C-
Confidence 456778999998888766 68899999999944332 222 24899999881 2
Q ss_pred cccccccccccccccHHHHHHHHHhhcccc-chhccc--------------------hhhHHHHHHHHHHhhhc-CC---
Q 008801 303 GESAIGRVAPVDSGLWWIILLRAYGKITGD-YALQER--------------------VDVQTGIKLIMNLCLAD-GF--- 357 (553)
Q Consensus 303 Ge~AIGRVapVDSgLWWIILlraY~k~TGD-~sla~~--------------------pevQrGirlIL~lCL~~-~F--- 357 (553)
|..+ |--.+|+.||||-+++-|++.++| ..+... .++...|+=||.-=.+- .|
T Consensus 1082 G~~p--rYNt~DA~lWfi~AIqdY~~~~~dg~~iL~~~v~R~fp~Ddt~~~~~~~~~~~l~~~iqeIl~~h~~G~~fRE~ 1159 (1464)
T TIGR01531 1082 GINP--RYNCRDAAWFWLQCIQDYVEIVPNGEKILKDPVRRIYPDDDSIPVDDGRADQYLFEVIYEALQKHFQGIQFRER 1159 (1464)
T ss_pred CCcc--cccCccHHHHHHHHHHHHHHHcCCHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHcCCccccc
Confidence 2222 234899999999999999999999 344111 12223343333222211 12
Q ss_pred ------------CCCCceeecC--------Cc-cccccccc-----------------cCCCchhHHHHHHHHHHHHHHH
Q 008801 358 ------------DMFPSLLVTD--------GS-CMIDRRMG-----------------IHGHPLEIQALFYTALRCSREM 399 (553)
Q Consensus 358 ------------d~fPtLlVpD--------g~-~MIDRRMg-----------------v~G~PLEIQaLfY~ALRca~eL 399 (553)
+.|+.-.--| |. +-=--+|| =.|+|.|||||||.||+.+.+|
T Consensus 1160 NAGp~iD~~M~deGfn~~I~vD~~~GLI~gGn~~ncgTWMDkmg~SekA~~~G~p~TPRdG~aVEInaLwynAL~~~~~l 1239 (1464)
T TIGR01531 1160 NAGPQIDRVMTDEGFNVTIGVDWETGFIYGGNRFNCGTWMDKMGESEKAGNKGIPATPRDGAAVEIVGLLKSALRFLIEL 1239 (1464)
T ss_pred cccccchhhhccccccceEEEcCCCCcEecCCCCCCCCCcCCCCcccccccCCcccCCCCCCceeHHHHHHHHHHHHHHH
Confidence 2333222222 21 11124666 2577899999999999999999
Q ss_pred hccc----CCCCc-hHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCcccchhhhcccCcCCCCcchhh--hhccC
Q 008801 400 LTVS----DGSGS-NNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWL--MDWIP 472 (553)
Q Consensus 400 L~~~----~~~~~-~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~a~NkFNI~pesIP~Wl--~dWlp 472 (553)
-+.. .+.+. ..--....++ +.....++||+.-. -.-.|-+ =...||+=.||-|..++=- .||
T Consensus 1240 ~~~~~~~~~g~~~~~~~~~~wa~~---ik~~Fe~~F~~~~~-~~~lyDv-----~~~~vnrrgIykD~~~s~~~~~D~-- 1308 (1464)
T TIGR01531 1240 KEKGVFKRSGVETQKWSYIEWNQK---IQDNFEKRFFVDES-QDADYDV-----AKLGVNRRGIYKDSYGSTKPWTDY-- 1308 (1464)
T ss_pred HHhcCcCcCCcccchhhHHHHHHH---HHHHHhhhcCCCcc-cCccccc-----cchhhccccccccccCCCCCCCCc--
Confidence 8753 12111 1111233333 45566788999421 0101111 1234677777766544110 111
Q ss_pred CCCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCceeccc
Q 008801 473 EEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKICYP 535 (553)
Q Consensus 473 ~~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs~aIm~Lie~rW~dLvg~MPlKICyP 535 (553)
-|+ +.| .++ +++-..|.+++++..+++++ + +|.++.=||=.=|
T Consensus 1309 --------qlR---PN~-~iA----~sla~~l~~~~~a~~~L~~v-~---~LltP~GlRTLdP 1351 (1464)
T TIGR01531 1309 --------QLR---PNF-AIA----MTVAPELFVPEKAWKALTIA-E---VLLGPLGMKTLDP 1351 (1464)
T ss_pred --------ccC---CCc-eEE----EeCCcccCCHHHHHHHHHHH-H---HhccCCccccCCC
Confidence 122 221 111 12236889999999999998 3 5999999987766
No 10
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=98.37 E-value=1.3e-06 Score=90.90 Aligned_cols=235 Identities=20% Similarity=0.212 Sum_probs=146.9
Q ss_pred ccHHHHHHHHHHHHhhhh-hcCceeEEEeecCCCCCCCCCC--CceeeccchHHHHHH-HhcCChHHHHHHHHhhhhhch
Q 008801 188 ETEIEKEAWRLLQEAVVT-YCESPIGTVAANDPGDKQPLNY--DQVFIRDFVPSALAF-LLKGEGEIVRNFLLHTLQLQS 263 (553)
Q Consensus 188 ~~~li~eAwe~l~~siV~-y~g~PvGTvAA~D~~~~~alNY--dQVFiRDfVPSaLaf-Ll~Ge~eIVRnFL~~tLqLQs 263 (553)
.++++++-|+.-.+++.. .++.+ .|-. -+ +..|.-|...++.+. ..-|+.+.+|++|...+.-|.
T Consensus 115 sd~~ln~i~~~~~~T~~~n~~~~~------~Dcp-----~RdER~~w~GD~~~~~~~~~~~~~~~~l~~~~l~~~~~~q~ 183 (509)
T PF05592_consen 115 SDPLLNRIWEMSRRTLRSNMQDVF------TDCP-----KRDERLGWTGDARVSALTAYYSFGDAALYRKWLRDFADSQR 183 (509)
T ss_dssp S-HHHHHHHHHHHHHHHHTBSSSB-------SBT-----TT-T---BHHHHHHHHHHHHCCT--HHHHHHHHHHHHGGTT
T ss_pred CcHHHHHHHHHHHHHHHhhCCCCc------eECc-----chhhhcCCcchHHHHHHHHHHhCCcHHHHHHHHHHHHHhhc
Confidence 467899999988777543 12222 2332 23 346899999888765 466888999999888877665
Q ss_pred hhhhccccCCCCCcccceEEEeeccCCCCCccccccCCccccccccccccccccHHHHHHHHHhhccccchhccc--hhh
Q 008801 264 WEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQER--VDV 341 (553)
Q Consensus 264 ~ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~AIGRVapVDSgLWWIILlraY~k~TGD~sla~~--pev 341 (553)
. .|.+|.-. | ..+ .+.-...|=++|||+.++-|.+.|||.++++. |.+
T Consensus 184 ~----------~G~~p~~~-----P------------~~~---~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~ 233 (509)
T PF05592_consen 184 P----------DGLLPSVA-----P------------SYG---GGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAM 233 (509)
T ss_dssp T----------STT-SSBS-----S------------------SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred c----------cCCceEEe-----c------------ccC---CCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3 58888643 2 111 11222334588999999999999999999986 777
Q ss_pred HHHHHHHHHHhhhcCCCCCCceeecCCccccccc------cccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 008801 342 QTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRR------MGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAI 415 (553)
Q Consensus 342 QrGirlIL~lCL~~~Fd~fPtLlVpDg~~MIDRR------Mgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I 415 (553)
++.|..+.... -+ ... -..+...+|-- ....+..+-.+++||.||+++.+|.+.... ++.++.-
T Consensus 234 ~~~l~~~~~~~----~~--~~~-~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~---~~~a~~y 303 (509)
T PF05592_consen 234 KRYLDYLERRV----DD--GLD-GLPGWGFGDWLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGK---DEDAAEY 303 (509)
T ss_dssp HHHHHHHHTTB-----T--SSB--CCSB--S-SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT----HHHHHHH
T ss_pred HHHHHHHHHhC----Cc--ccc-CCCCCceeecCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHH
Confidence 66666554433 22 222 44445555533 344455677899999999999999997544 4456777
Q ss_pred HHHHHHHHHhhhhhcccchhhhhhhhccCCcccchhhhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhh
Q 008801 416 NNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLG 495 (553)
Q Consensus 416 ~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLG 495 (553)
.+|...|+.-|+++||-+-+. .|.+ .---+
T Consensus 304 ~~~a~~lk~a~~~~~~d~~~g----------~~~~----------------------------------------~sq~~ 333 (509)
T PF05592_consen 304 RARAERLKAAINRHFWDPEKG----------GYAD----------------------------------------GSQHA 333 (509)
T ss_dssp HHHHHHHHHHHHHHCEETTTT----------EECT----------------------------------------TSHCH
T ss_pred HHHHHHHHHHHHHhccCcccC----------cccC----------------------------------------CchHH
Confidence 778888888899999944333 1111 00347
Q ss_pred hHHHHHhcCCCHHHH-HHHHHHHHHHhhh
Q 008801 496 NLWSIVSSLGTPKQN-ESILNLIEAKWDD 523 (553)
Q Consensus 496 NllAILssLat~~Qs-~aIm~Lie~rW~d 523 (553)
|.+|++++|+++++. .++.+.+.+.+..
T Consensus 334 ~alAl~~gl~p~~~~~~~~~~~l~~~~~~ 362 (509)
T PF05592_consen 334 NALALLFGLVPEEERAAAALKRLAKRIAA 362 (509)
T ss_dssp HHHCHHCCHC-HHHHTCHCHCHCHHCCHC
T ss_pred HHHHHHhchhhhhhhHHHHHHHHHHHHHh
Confidence 999999999977665 6677666665543
No 11
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=98.31 E-value=9.5e-07 Score=91.11 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=60.4
Q ss_pred cccccccHHHHHHHHHhhccccchhccc--hhhHHHHHHHHHHhhhcCCCCCCceeecCCccccccccc---cCCCchhH
Q 008801 311 APVDSGLWWIILLRAYGKITGDYALQER--VDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMG---IHGHPLEI 385 (553)
Q Consensus 311 apVDSgLWWIILlraY~k~TGD~sla~~--pevQrGirlIL~lCL~~~Fd~fPtLlVpDg~~MIDRRMg---v~G~PLEI 385 (553)
.-+|..+++|+.++.|.+.|||.+|.+. |.|+++|+..+. -+-|..++ ||+....|..+| ++|..-+.
T Consensus 96 ~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~----~D~d~dGl---~e~~g~~D~TyD~~~~~G~say~ 168 (365)
T PF04685_consen 96 AWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS----WDRDGDGL---PENPGHPDQTYDDWSMYGPSAYC 168 (365)
T ss_dssp ---------------------------EHHHHHHHHHHHHHH----SB--TTS----BEEET---SSSTT-EEEEEEHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHHHHHHHHh----hCCCCCCC---CCCCCCCccccccCCeeCCCHHH
Confidence 4789999999999999999999999997 999999997775 22223343 333333334433 46888999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhccc
Q 008801 386 QALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWV 432 (553)
Q Consensus 386 QaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWl 432 (553)
..||++||+++.+|.+...+ .+.++.-.+.+...+..+.+..|-
T Consensus 169 ~~L~laAL~A~~emA~~lgd---~~~a~~y~~~~~~~~~~~~~~LWn 212 (365)
T PF04685_consen 169 GGLWLAALRAAAEMAKILGD---PELAAKYRELAEKAKKAFNKKLWN 212 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999998644 567788888888888889888884
No 12
>PRK10137 alpha-glucosidase; Provisional
Probab=97.32 E-value=0.015 Score=66.55 Aligned_cols=271 Identities=12% Similarity=0.041 Sum_probs=164.7
Q ss_pred HHHHHHHHhhhhhcCceeEEEeecCCCC-CCC-----CCCCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhh
Q 008801 194 EAWRLLQEAVVTYCESPIGTVAANDPGD-KQP-----LNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKT 267 (553)
Q Consensus 194 eAwe~l~~siV~y~g~PvGTvAA~D~~~-~~a-----lNYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ 267 (553)
+..++..+|+-..+++.-|..-+..+.- ... -.++++|-||-+..|++++ .-+||..+.=|...++.|.++
T Consensus 305 ~~~~l~~kA~~~L~~Nwr~~~g~~~~~~t~Ps~gl~Wf~~~~~W~WDS~~~A~~la-~fdpelA~~~lr~Lf~~Q~~~-- 381 (786)
T PRK10137 305 EQTRVAVKAMETLNGNWRSPAGAVKFNTVTPSVTARWFSGNQTWPWDTWKQAYAMA-HFNPDVAKENIRAVFSWQIQP-- 381 (786)
T ss_pred HHHHHHHHHHHHHHHhccccccccccCceEeCCCCCCCCCCCccchHHHHHHHHHh-hcCHHHHHHHHHHHHHhhccc--
Confidence 3345666777777788777554443322 111 2235699999999999876 457899999888888888653
Q ss_pred ccccCC-CCCcccceEEEeeccCCCCCccccccCCcc-ccc---cccccccccccHHHHHHHHHhhccccchhccc--hh
Q 008801 268 VDCYSP-GQGLMPASFKVRNVPLESNKFEEVLDPDFG-ESA---IGRVAPVDSGLWWIILLRAYGKITGDYALQER--VD 340 (553)
Q Consensus 268 ld~~~~-g~GlmPASFkV~~~~~~~~~~ee~l~aDFG-e~A---IGRVapVDSgLWWIILlraY~k~TGD~sla~~--pe 340 (553)
.|..+| ..|.+|--+- +++ -||.| +.+ -|...| --..++++.|.+.|||.+|.+. |.
T Consensus 382 ~d~~r~~~~G~Iph~vf--~~~----------~p~R~g~~~~~ne~~tqP----PL~a~av~~vy~~t~d~~fl~~lyPk 445 (786)
T PRK10137 382 DDSVRPQDVGFVPDLIA--YNL----------SPERGGDGGNWNERNTKP----SLAAWSVMEVYNVTQDKAWLAEMYPK 445 (786)
T ss_pred cCCCCcCCCCeeeEEec--cCC----------CcccccccccccCCCcCc----CHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 355544 3688886551 221 13332 221 122334 4466778888899999999996 99
Q ss_pred hHHHHHHHHHHhhhcCCCCCCcee----------ec--------------------------------------------
Q 008801 341 VQTGIKLIMNLCLADGFDMFPSLL----------VT-------------------------------------------- 366 (553)
Q Consensus 341 vQrGirlIL~lCL~~~Fd~fPtLl----------Vp-------------------------------------------- 366 (553)
+.+..+|++.-.=+ |..+.++ .+
T Consensus 446 L~a~h~Ww~~~RD~---dg~Gl~eY~~~~~~~h~~~~g~~~~~i~~~~~~~~~~G~~n~~~~~~~~~~~~~~~~~~~~~~ 522 (786)
T PRK10137 446 LVAYHDWWLRNRDH---NGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDSLEIPAQVAAS 522 (786)
T ss_pred HHHHHHHHHhcCCC---CCCceeEeeccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 99999998876522 2223333 11
Q ss_pred --CCcc---cccc-------------------------c---c-ccCCC-----chhHHHHHHHHHHHHHHHhcccCCCC
Q 008801 367 --DGSC---MIDR-------------------------R---M-GIHGH-----PLEIQALFYTALRCSREMLTVSDGSG 407 (553)
Q Consensus 367 --Dg~~---MIDR-------------------------R---M-gv~G~-----PLEIQaLfY~ALRca~eLL~~~~~~~ 407 (553)
+|.+ ..|+ + = -+.|+ |.+.|+++|.|.++..+|.+....
T Consensus 523 WESGmDNap~f~~i~~~~~~~y~r~~y~r~~~~V~~~~~~~~dg~l~~~p~~~e~VDLNsyLy~a~~~LA~LAe~LG~-- 600 (786)
T PRK10137 523 WESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGK-- 600 (786)
T ss_pred CCCCCCCccccccccccccchhhhccccccceeeeehhcccCCCCccCCCCcCCCHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 1111 1110 0 0 12244 467899999999999999887533
Q ss_pred chHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCcccchhhhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcc
Q 008801 408 SNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHM 487 (553)
Q Consensus 408 ~~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rm 487 (553)
.+.++...++-..|+..|.+++|-+-...=-=|...++.-. ....|-+ .
T Consensus 601 -~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~DydL~~~~~~----------------------~~~~g~~--------i 649 (786)
T PRK10137 601 -PEEAKRYRQLAQQLADYINTCMFDETTGFYYDVRIEDKPLA----------------------NGCAGKP--------I 649 (786)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEecCccccc----------------------ccccCcc--------e
Confidence 34455566666666777888787643221100001111000 0001111 2
Q ss_pred cchhhhhhhHHHHHhcCCCHHHHHHHHHHHHH
Q 008801 488 DFRFFTLGNLWSIVSSLGTPKQNESILNLIEA 519 (553)
Q Consensus 488 DFRfFsLGNllAILssLat~~Qs~aIm~Lie~ 519 (553)
+-|-++.++++..++++++++|++++++.+..
T Consensus 650 ~~~~~~~agf~PLwaGia~~eqA~~VV~~L~~ 681 (786)
T PRK10137 650 VERGKGPEGWSPLFNGAATQANADAVVKVMLD 681 (786)
T ss_pred eeeccCccchhhccCCCCCHHHHHHHHHHhcC
Confidence 23556788899999999999999999998863
No 13
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=96.12 E-value=0.23 Score=55.98 Aligned_cols=158 Identities=17% Similarity=0.193 Sum_probs=87.9
Q ss_pred CCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhhccccCCCCCcccceEEEeeccCCCCCccccccCCccccc
Q 008801 227 YDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESA 306 (553)
Q Consensus 227 YdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~A 306 (553)
|.=||.||++-++.||+..|..|..+.|+.-+++.|.- .|-.|..+.|... ++..+
T Consensus 292 YryvW~RD~a~~a~AL~~~G~~~~a~~~~~~l~~~~~~----------~G~~lq~y~vdG~------------~~~~~-- 347 (648)
T TIGR01535 292 YHLVWPRDLYQVANAFLAAGDVDSALRSLDYLAKVQQD----------NGMFPQNSWVDGK------------PYWTG-- 347 (648)
T ss_pred eEEEehhhHHHHHHHHHHCCCHHHHHHHHHHHHHHhcc----------CCCcCceeccCCC------------CCCCC--
Confidence 99999999999999999999999999999999999873 4444555654221 11110
Q ss_pred cccccccccccHHHHHHHHHhhccccchhccchhhHHHHHHHHHHhhhcCCCCCCceeecCCccccccccccCCCchhHH
Q 008801 307 IGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQ 386 (553)
Q Consensus 307 IGRVapVDSgLWWIILlraY~k~TGD~sla~~pevQrGirlIL~lCL~~~Fd~fPtLlVpDg~~MIDRRMgv~G~PLEIQ 386 (553)
-=-|--=..|.+++.+.+. |. .+..+.++-+++.+...+ -.||-. +=--|-|++ |--.=
T Consensus 348 ----iQlD~~g~~i~~~~~l~~~--~~-----~~~~~~vk~aadfl~~~~-------p~p~~d-~WEer~g~~--~~T~a 406 (648)
T TIGR01535 348 ----IQLDETAFPILLAYRLHRY--DH-----AFYDKMLKPAADFIVKNG-------PKTGQE-RWEEIGGYS--PSTLA 406 (648)
T ss_pred ----ccccHHHHHHHHHHHHHHc--Cc-----HHHHHHHHHHHHHHHHcC-------CCCCCC-cccccCCcC--chhHH
Confidence 2223332345556665553 22 223444444444444433 112221 111233332 33333
Q ss_pred HHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccc
Q 008801 387 ALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVD 433 (553)
Q Consensus 387 aLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD 433 (553)
+. |+||.||.+|++....+ +.+++-.+--..++..|.++.|-.
T Consensus 407 ~v-~aaL~~Aa~iA~~~g~~---~~a~~w~~~Ad~i~~~i~~~~~~~ 449 (648)
T TIGR01535 407 AE-IAGLTAAADIAEQNGDA---GSAQKYRETADNWQKLIENWTFTT 449 (648)
T ss_pred HH-HHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHHHhCcCC
Confidence 33 39999999999975442 222222222222344555556553
No 14
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=94.63 E-value=0.4 Score=50.37 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=91.5
Q ss_pred HHHHHHHhhhhh---cCce-eEEEeec-CCCCCCCCCCCceeeccchHHHHHHHhcCChH---------------HHHHH
Q 008801 195 AWRLLQEAVVTY---CESP-IGTVAAN-DPGDKQPLNYDQVFIRDFVPSALAFLLKGEGE---------------IVRNF 254 (553)
Q Consensus 195 Awe~l~~siV~y---~g~P-vGTvAA~-D~~~~~alNYdQVFiRDfVPSaLafLl~Ge~e---------------IVRnF 254 (553)
+++++.+|+... ...| -|.+.|. +.+ .+ +|.=||+||.+-++.+++..|..| +.+.|
T Consensus 3 ~~~~~~rs~~~l~l~~~~~~~GaiiAsps~s--~p-dY~y~W~RD~a~~~~al~~~g~~~~~~~~~~~l~~~~~~~~~~~ 79 (448)
T PF00723_consen 3 YLDAVYRSALTLKLLTQEPITGAIIASPSTS--LP-DYRYCWVRDAAYTAYALWALGYRDEARAFFYELEQSLVKLMRGY 79 (448)
T ss_dssp HHHHHHHTBTTTHTTBTTSSTT-B-S-SSBS--SS-BTCSEEHHHHHHHHHHHHHHT-H--HHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCeEEeecccC--CC-CCceeecccHHHHHHHHHHhhhhHHHHHHHhhhhHhhhhhhhhh
Confidence 456666676643 3444 6666553 332 22 999999999999999999888322 23456
Q ss_pred HHhhhhhchhhhhccccCCCCCcccceEEEeeccCCCCCccccccCCccccccccccccccccHHHHHHHHHhhccccch
Q 008801 255 LLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYA 334 (553)
Q Consensus 255 L~~tLqLQs~ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~AIGRVapVDSgLWWIILlraY~k~TGD~s 334 (553)
|....++|........+.++.|+=-.-|.+... +--|..|-||.- -|.-==.+++++.|.+ +|..-
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~------------~~~g~~~w~~~Q-~D~~gl~l~~l~~~~~-~g~~~ 145 (448)
T PF00723_consen 80 LQPMYRQQGKVNPSGEFQSPEGLHEPGYNVSGP------------VRVGNPAWGRPQ-NDGPGLRLLALWQYID-SGLQI 145 (448)
T ss_dssp HHHHHHHHTS-BTTB-TTTTGGGGTTEEETTSE------------BTTS-B-ES--B-THHHHHHHHHHHHHHH-TTHHH
T ss_pred hhhhhhhcCccCCCccccCccccccceecCCCC------------cccCchhccCcC-CCchHHHHHHHHHHHH-cCCCc
Confidence 666666666544433333332332233322111 111223333322 2222234556666633 33222
Q ss_pred hccchhhHHHHHHHHHHhhh----cCCCCCCceeecCCccccccccccCCCchh--HHHHHHHHHHHHHHHhcccCCCCc
Q 008801 335 LQERVDVQTGIKLIMNLCLA----DGFDMFPSLLVTDGSCMIDRRMGIHGHPLE--IQALFYTALRCSREMLTVSDGSGS 408 (553)
Q Consensus 335 la~~pevQrGirlIL~lCL~----~~Fd~fPtLlVpDg~~MIDRRMgv~G~PLE--IQaLfY~ALRca~eLL~~~~~~~~ 408 (553)
.....++ +.|+.+++.+.+ ++||. +=-.+|..-. =-+-=+.||++|..++.....
T Consensus 146 ~~~~~~~-~~I~~~~~yi~~~w~~pd~dl---------------WEe~~g~~~f~~S~~~~~~AL~~a~~~a~~~g~--- 206 (448)
T PF00723_consen 146 IYTYWEV-SFIKNDLDYIERNWREPDFDL---------------WEERNGIHFFTASSAMQWAALLRAANLAELFGD--- 206 (448)
T ss_dssp HHTHHHH-HTHHHHHHHHHHHTTSBEE-T---------------TSS-EEEEHH--HHHHHHHHHHHHHHHHHHTT----
T ss_pred ccccchh-HHHHHHHHHHHHHcCCcCCcc---------------ccccCCCCccchhHHHHHHHHHHHHHHHHHcCC---
Confidence 2222222 334444444433 33322 2223334433 333446899999999887433
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 008801 409 NNLVRAINNRLSALSFHI 426 (553)
Q Consensus 409 ~~~~~~I~~RL~aLs~hi 426 (553)
...++...+....+...|
T Consensus 207 ~~~~~~~~~~a~~i~~~l 224 (448)
T PF00723_consen 207 PGDAERWRETADEIRERL 224 (448)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 223333333333344444
No 15
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=94.55 E-value=0.092 Score=56.72 Aligned_cols=292 Identities=18% Similarity=0.197 Sum_probs=153.5
Q ss_pred cCceeEEEeecCCCCCCCCCCCceeeccchHHH--HHHHhcCChHHHHHHHHhhhhhchhhhhcccc----CCC--CCcc
Q 008801 207 CESPIGTVAANDPGDKQPLNYDQVFIRDFVPSA--LAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCY----SPG--QGLM 278 (553)
Q Consensus 207 ~g~PvGTvAA~D~~~~~alNYdQVFiRDfVPSa--LafLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~----~~g--~Glm 278 (553)
.+.+-=+|..=|= +--|+||-+--. ..-|++.+++|.+- +.-.+++|..--.+|-| ++. .|+-
T Consensus 29 ~~~~~tFViTGDI--------pAmWLRDS~~Q~~pYl~l~~~d~~l~~l-i~G~I~rQa~~I~~dPYaNAF~~~~~s~~~ 99 (424)
T PF06824_consen 29 DEDPDTFVITGDI--------PAMWLRDSAAQLRPYLPLAKEDPSLARL-IRGVINRQARYILIDPYANAFNPPPESGIP 99 (424)
T ss_dssp TSTSEEEE-SBSS--------SSEEHHHHHHHCGGGGGGGCC-HHHHHH-HHHHHHHHHHHHHH-TT-SEEESS-----T
T ss_pred CCCCCeEEEecCc--------hhhhccccHhHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHhcchhhcccCCccccccc
Confidence 4455556665443 236999976443 23456677766554 66677888876665544 332 1221
Q ss_pred cceEEEeeccCCCCCccccccCCc-cccccccccccccccHHHHHHHHHhhccccchhccchhhHHHHHHHHHHhhhcC-
Q 008801 279 PASFKVRNVPLESNKFEEVLDPDF-GESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADG- 356 (553)
Q Consensus 279 PASFkV~~~~~~~~~~ee~l~aDF-Ge~AIGRVapVDSgLWWIILlraY~k~TGD~sla~~pevQrGirlIL~lCL~~~- 356 (553)
| +.. . ....+...+.| +.---.|=--+||-=..+-|.+.|.+.|||.++.... +.+|+++||+..-.+.
T Consensus 100 ~-~~~----~---~~~~D~~~~~~~~~~v~ErKyElDSL~~~l~La~~y~~~Tgd~~~f~~~-~~~A~~~il~~~~~eq~ 170 (424)
T PF06824_consen 100 P-NGN----G---HWQSDTTEMPYDPPWVWERKYELDSLCYFLQLAYQYWKATGDTSFFDED-WLRAVRLILDTWRTEQR 170 (424)
T ss_dssp S-S-T----S---GCCGSBS------TTEEE----HHHHHHHHHHHHHHHHHH--GTTSSHH-HHHHHHHHHHHHHHTTG
T ss_pred c-ccc----C---CCCCCccCCCcCCCceeeecchhhhhhHHHHHHHHHHHhhCChhhhhHH-HHHHHHHHHHHHHHHHH
Confidence 2 110 0 00011111110 0111223345899999999999999999999999877 9999999988775543
Q ss_pred --CCCCCcee------e----------c-CC-------ccccc---c---ccccCCCchhHHHHHHHHHHHHHHHhcccC
Q 008801 357 --FDMFPSLL------V----------T-DG-------SCMID---R---RMGIHGHPLEIQALFYTALRCSREMLTVSD 404 (553)
Q Consensus 357 --Fd~fPtLl------V----------p-Dg-------~~MID---R---RMgv~G~PLEIQaLfY~ALRca~eLL~~~~ 404 (553)
|+.+...+ . + || .-||- | -.-+|||-+.-++++-.+|+-+.+|+....
T Consensus 171 ~t~~~~~~~~~s~Y~F~R~~~~~tdtl~~~G~G~pv~~tGli~S~FRPSDDa~~y~yliPsNm~a~v~L~~laei~~~~~ 250 (424)
T PF06824_consen 171 PTYDEDHEGLPSPYRFQRPTCRPTDTLPNDGRGNPVAYTGLIWSGFRPSDDACIYPYLIPSNMFAVVALEYLAEILRALG 250 (424)
T ss_dssp ------SSSCS-S---BESBSSGGGS-HHHHT-S----SSS-B-SB-TTSSB-SSSEEHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhccccccCCCcceeeccCCCCCccccCCCcCCcCCCCCceecCcCCCCcchhcCcCChHHHHHHHHHHHHHHHHHHhc
Confidence 33222211 0 0 10 01220 1 134789999999999999999999999654
Q ss_pred CCCchHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCcccchhhh-cccCcCCC--Ccchhhh------------h
Q 008801 405 GSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDAT-NKFNIYPE--QIPSWLM------------D 469 (553)
Q Consensus 405 ~~~~~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~a~-NkFNI~pe--sIP~Wl~------------d 469 (553)
..+..++++...+.-..++.=|.+|-=++..+-.+||.|-+.-||.... ..=| +|- |+|.+=+ .
T Consensus 251 ~~~~~~la~~~~~la~eI~~gI~~~giv~h~~~g~iyAYEVDG~G~~~~mDDAN-vPSLLSlPylGf~~~~DpvYqnTR~ 329 (424)
T PF06824_consen 251 WDDSAELAERARALADEIRAGIEKHGIVEHPKFGKIYAYEVDGFGNHLLMDDAN-VPSLLSLPYLGFCSKDDPVYQNTRR 329 (424)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEE-SEE-SSS-EE----SS-SS-STTHHHHTSS-TT-HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHheEEeCCCCCeEEEEEecCCCCccccCCCC-CchHhhhhhcCCCCCCcHHHHHHHH
Confidence 4111245555555555566667888888888899999999999998321 2223 221 3454311 1
Q ss_pred c-cCC-------CCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHHHHHHHHHH
Q 008801 470 W-IPE-------EGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIE 518 (553)
Q Consensus 470 W-lp~-------~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs~aIm~Lie 518 (553)
| |.. +|.++-|-=+|....=--.-++-++.+|++-- .+..++.++++.
T Consensus 330 ~iLS~~~NPyy~~G~~~~GiGsPHt~~~~iWPmsl~~~~lTs~d-~~Ei~~~L~~L~ 385 (424)
T PF06824_consen 330 FILSPEGNPYYFSGKAASGIGSPHTPPGYIWPMSLAMQGLTSDD-DEEIRECLRMLK 385 (424)
T ss_dssp HHTSTT-STTEEEESSEEEE--TTT-TTEEEHHHHHHHHHT-S--HHHHHHHHHHHH
T ss_pred HHhCCCCCCccccCCCcCCCCCCCCCCCCccHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 2 222 35555555566654322344555666666633 333444455443
No 16
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=93.15 E-value=2.5 Score=50.18 Aligned_cols=235 Identities=21% Similarity=0.299 Sum_probs=142.4
Q ss_pred ccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhhccccCCCCCcccceEEEeeccCCCCCccccccCCccccccccccc
Q 008801 233 RDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAP 312 (553)
Q Consensus 233 RDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~AIGRVap 312 (553)
||-.=-.|.|++.- |+.+|.=|+.+...|=. +|=.|--|- |.. +-|- -| |=.=
T Consensus 615 RD~~Qd~l~f~~~~-p~~aR~qIl~~as~Qf~----------eGd~~hWf~----p~t----------~ag~-qi-r~~~ 667 (1056)
T COG3459 615 RDQLQDTLEFLLAR-PALARKQILDAASRQFV----------EGDVQHWFL----PDT----------YAGV-QI-RTSI 667 (1056)
T ss_pred ccccccchhhhhcC-HHHHHHHHHHHHhhccc----------CCCcccccc----ccc----------cccc-hh-hccc
Confidence 44444457777776 99999966555554433 466677772 210 1110 01 1222
Q ss_pred cccccHHHHHHHHHhhccccchhccc-------h--------------hhHHHHHHHHHHhhhcCCCCCCceeecCCc-c
Q 008801 313 VDSGLWWIILLRAYGKITGDYALQER-------V--------------DVQTGIKLIMNLCLADGFDMFPSLLVTDGS-C 370 (553)
Q Consensus 313 VDSgLWWIILlraY~k~TGD~sla~~-------p--------------evQrGirlIL~lCL~~~Fd~fPtLlVpDg~-~ 370 (553)
-|--+|-+-..-.|++.|||.++..- | .|+++++++.+-. +=.+.|+.+=.|=- |
T Consensus 668 sDdvvWl~~a~~~Yl~~TGD~aILdE~iPf~~~~~l~~~s~e~~TLyEH~~rAld~av~r~---g~~glpli~gGDWND~ 744 (1056)
T COG3459 668 SDDVVWLLKAIADYLKETGDAAILDEVIPFIDGPALPEFSKEQATLYEHCARALDLAVARL---GPHGLPLILGGDWNDG 744 (1056)
T ss_pred CCceeeeHHHHHHHHHhcCcHhhhhccccccCCCccccccccchhHHHHHHHHHHHHHHhc---CCCCcccccCCccccc
Confidence 46679999999999999999998752 2 5888888776322 11222332221100 1
Q ss_pred ccccccccCC--CchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCccc
Q 008801 371 MIDRRMGIHG--HPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEY 448 (553)
Q Consensus 371 MIDRRMgv~G--~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeY 448 (553)
| .+.|..| -..=+==+++.+|+...+|.+...+ ++-++...+-.++++.-+-.+=|. -+.|| ..|
T Consensus 745 l--n~vg~~g~geSv~lgW~l~~tlq~F~~lak~r~d---~~r~~~~~~~~ea~~~~~~~~~wD-----g~wy~---r~~ 811 (1056)
T COG3459 745 L--NLVGNGGKGESVWLGWFLALTLQTFKELAKARGD---EARADTWAKHVEALREALETNGWD-----GEWYR---RGY 811 (1056)
T ss_pred c--cccccCCccceeehhhHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHhcCCC-----cceEE---ecc
Confidence 1 1122222 1222334788999999999997543 334455555555555444555554 33444 233
Q ss_pred chhhhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCC
Q 008801 449 STDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHM 528 (553)
Q Consensus 449 s~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs~aIm~Lie~rW~dLvg~M 528 (553)
+++. =+| .+|-.--.+.+++.+.|++||+..+++||+.-|+-|.+ .|+-+-
T Consensus 812 ~d~g-----------------------~~l---gs~e~~E~qI~~i~qs~sVlSg~gd~~ra~kaMd~v~k---~L~~pd 862 (1056)
T COG3459 812 GDDG-----------------------TPL---GSPEDEECQIDSIPQSWSVLSGEGDKERAEKAMDSVMK---YLVDPD 862 (1056)
T ss_pred ccCC-----------------------Ccc---cCCCCcccceeeeccchhhhhCCCChHHHHHHHHHHHH---hccCcc
Confidence 3211 111 23344556778899999999999999999999999965 588877
Q ss_pred CceecccCCCC
Q 008801 529 PLKICYPALES 539 (553)
Q Consensus 529 PlKICyPAle~ 539 (553)
=+++.=||.+.
T Consensus 863 gvrL~tppf~~ 873 (1056)
T COG3459 863 GVRLFTPPFSY 873 (1056)
T ss_pred ccEecCCcccc
Confidence 79998888765
No 17
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.05 E-value=1.5 Score=49.18 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=88.6
Q ss_pred CCCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhhccccCCCCCcccceEEEeeccCCCCCccccccCCcccc
Q 008801 226 NYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGES 305 (553)
Q Consensus 226 NYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~ 305 (553)
.|+-||+||++-+++|++..|..+..+.|+.-..+.|.-+..+...=+.-| + |++++
T Consensus 281 dY~y~W~RD~~~~~~AL~~~G~~~~a~~~f~~l~~~~~~~~~~~~~y~~~g------------------~-----~~~~~ 337 (612)
T COG3387 281 DYRYVWPRDASYAALALLAIGYKKEALRFFEFLPDVQTPNGKLYHKYSIDG------------------S-----DLAES 337 (612)
T ss_pred CceEEccCcHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCceeeEEecCC------------------C-----ccccc
Confidence 399999999999999999999999999999999999987443111111111 0 22222
Q ss_pred ccc-----cccc--cccccHHHHHHHHHhhccccchhccc---hhhHHHHHHHHHHhhhcCCCCCCceeecCCccccccc
Q 008801 306 AIG-----RVAP--VDSGLWWIILLRAYGKITGDYALQER---VDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRR 375 (553)
Q Consensus 306 AIG-----RVap--VDSgLWWIILlraY~k~TGD~sla~~---pevQrGirlIL~lCL~~~Fd~fPtLlVpDg~~MIDRR 375 (553)
=.+ +.-| +|...|=...|.-|....+|.-+... +.+-..-.++.. |-. .= =.+-.||. ....-|
T Consensus 338 w~~~~~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---~~~~~p~~-~~WEer 411 (612)
T COG3387 338 WLPVSGYYNSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRR-MEK-IK---ANLPTPDF-DLWEER 411 (612)
T ss_pred cccccCCCCCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHh-hh---cCCCCCcc-ceeccc
Confidence 222 2333 35555555566666677776655442 233333332322 100 00 01112332 345567
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHhcccCC
Q 008801 376 MGIHGHPLEIQALFYTALRCSREMLTVSDG 405 (553)
Q Consensus 376 Mgv~G~PLEIQaLfY~ALRca~eLL~~~~~ 405 (553)
+| |--+.-+.-|+||.||..|++...+
T Consensus 412 ~g---~~~yt~~~~~agLd~A~~lA~~~gd 438 (612)
T COG3387 412 GG---HFTYTKATVYAGLDAAADLAEEFGD 438 (612)
T ss_pred CC---cccchHHHHHHHHHHHHHHHHHhCC
Confidence 77 4445668889999999999998643
No 18
>PLN02567 alpha,alpha-trehalase
Probab=91.63 E-value=10 Score=42.41 Aligned_cols=224 Identities=17% Similarity=0.198 Sum_probs=127.4
Q ss_pred CCCCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhhccccCCCCCcccceEEEeeccCCCCCccccccCCccc
Q 008801 225 LNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGE 304 (553)
Q Consensus 225 lNYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe 304 (553)
--++++|-=|---.++++|..|..|.+|+-+..-+.++.. .|.||..-++-.
T Consensus 148 gRFrE~yyWDSy~i~~GLl~s~~~~~A~~mi~Nf~~~i~~----------~GfIPNg~R~Yy------------------ 199 (554)
T PLN02567 148 SRFREVYYWDSYWVIRGLLASKMYETAKGVVENLLYLVDT----------YGFVPNGARAYY------------------ 199 (554)
T ss_pred CCcCccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----------cCcCCCCCcccc------------------
Confidence 3477888899999999999999999999987777777764 799996543311
Q ss_pred cccccccccccccHHHHHHHHHhhccccchhccc--hhhHHHHHHHHHH-------------------------------
Q 008801 305 SAIGRVAPVDSGLWWIILLRAYGKITGDYALQER--VDVQTGIKLIMNL------------------------------- 351 (553)
Q Consensus 305 ~AIGRVapVDSgLWWIILlraY~k~TGD~sla~~--pevQrGirlIL~l------------------------------- 351 (553)
-||.-|= =....+++|.+.|||.+|+++ |.+.+=.++-++-
T Consensus 200 --l~RSQPP----lla~mV~~~~~~t~d~~~l~~~lp~L~~E~~~W~~~~~~v~i~~~~g~~~~L~rY~~~~~~PrpEsy 273 (554)
T PLN02567 200 --TNRSQPP----LLSAMVLAVYAATKDVELVRRALPALLKEHAFWTSGRHTVTIRDANGVVHVLSRYYAMWDKPRPESS 273 (554)
T ss_pred --cCCCCcH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcceeeecCCCCcCCCcccccCCCCCCCccc
Confidence 2222110 023345566666666665554 5555555544331
Q ss_pred -------------------------hhhcCCCCCCceeecCCccccc-cccccCCCchhHHHHHHHHHHHHHHHhcccCC
Q 008801 352 -------------------------CLADGFDMFPSLLVTDGSCMID-RRMGIHGHPLEIQALFYTALRCSREMLTVSDG 405 (553)
Q Consensus 352 -------------------------CL~~~Fd~fPtLlVpDg~~MID-RRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~ 405 (553)
.-.-|+|. -+....|+..|=. |...| .|.+..+++|.+.+.-.+|.+....
T Consensus 274 reD~~~a~~~~~~~~~~~~y~~l~a~aESGwDf-SsRw~~~~~~l~ti~t~~i--~pVDLNa~L~~~e~~LA~la~~lG~ 350 (554)
T PLN02567 274 RIDKEVASKFSSSSEKQQLYRDIASAAESGWDF-SSRWMRDGSNLTTLRTTSI--LPVDLNAFLLKMELDIAFFAKLLGD 350 (554)
T ss_pred cccHHHHhcCCCchHHHHHHHHHHHHHHcCCCc-hhhhccccccccccccccc--cCccHHHHHHHHHHHHHHHHHHhCC
Confidence 00112221 1111111111110 11112 5789999999999988888876432
Q ss_pred -CCchHHHHHHHHHHHHHHHhh---hhhcccchhhhhhhhccCCcccchhhhcccCcCCCCcchhhhhccCCCCCeeeee
Q 008801 406 -SGSNNLVRAINNRLSALSFHI---REYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGN 481 (553)
Q Consensus 406 -~~~~~~~~~I~~RL~aLs~hi---r~yYWlD~~~ln~IyRykTEeYs~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGN 481 (553)
+..+++.++...|..++..++ ...+|.|.+-.+ .. ..|+ .+ ..|-+.
T Consensus 351 ~~~a~~~~~~A~~~~~aI~~~lWdee~G~y~Dydl~~-------~~----~~~~------~~----~~~~~~-------- 401 (554)
T PLN02567 351 KATAERFLKAAKARKRAINAVLWNEEMGQWLDYWLPP-------NG----ATCQ------ES----YTWDAE-------- 401 (554)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcccCeEEeecccc-------cc----cccc------cc----cccccc--------
Confidence 113345555566666665554 445555554322 10 0000 00 001111
Q ss_pred ccCCcccchhhhhhhHHHHHhcCCCHH--HHHHHHHHHHH
Q 008801 482 LQPAHMDFRFFTLGNLWSIVSSLGTPK--QNESILNLIEA 519 (553)
Q Consensus 482 l~P~rmDFRfFsLGNllAILssLat~~--Qs~aIm~Lie~ 519 (553)
+.- +.++..|++-..+++++++ |+..+++.++.
T Consensus 402 ----~~~-~~~~~s~f~PLw~g~~~~~~~~a~~v~~~l~~ 436 (554)
T PLN02567 402 ----NQN-TNVYASNFVPLWCGVVPPGDAKVEKVVESLKS 436 (554)
T ss_pred ----ccc-cCccHHHHHHHHcCCCChhhHHHHHHHHHHHh
Confidence 111 5678899999999999986 57888888874
No 19
>PRK13271 treA trehalase; Provisional
Probab=88.29 E-value=4.3 Score=45.66 Aligned_cols=106 Identities=15% Similarity=0.263 Sum_probs=65.7
Q ss_pred CchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCcccchhhhcccCcCC
Q 008801 381 HPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYP 460 (553)
Q Consensus 381 ~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~a~NkFNI~p 460 (553)
.|.++++|+|.+.+.-.++.+.... ..-+....++...++.-|++++|=+ +
T Consensus 337 iPVDLNALLy~ae~~LA~la~~lGd---~~~A~~y~~~A~~rr~AI~~~LWne-------------e------------- 387 (569)
T PRK13271 337 VPVDLNALMFKMEKILARASKAAGD---NAMANQYETLANARQKAIEKYLWND-------------K------------- 387 (569)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHHhcccC-------------C-------------
Confidence 7899999999999999998876432 2233344444444445556666621 1
Q ss_pred CCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCc
Q 008801 461 EQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPL 530 (553)
Q Consensus 461 esIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs~aIm~Lie~rW~dLvg~MPl 530 (553)
.|-|+==++..++.- .-|+..|++-..+++++++|++++++.++.++-. .|-+|.
T Consensus 388 -------------~G~f~DYDl~~~~~r-~~~saa~f~PLwag~a~~~qA~~Vv~~l~~~Ll~-pgGLpT 442 (569)
T PRK13271 388 -------------EGWYADYDLKSHKVR-NQLTAAALFPLYVNAAAKDRANKVAAATKTHLLQ-PGGLNT 442 (569)
T ss_pred -------------CCEEEEEECCCCCEe-echhHHHHHhhhcCCCCHHHHHHHHHHHHHhcCC-CCCccC
Confidence 111110011111110 2478899999999999999999999988766543 344444
No 20
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=84.62 E-value=3.8 Score=46.74 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=82.3
Q ss_pred cCCcc--ccccccc---cccccccH------HHHHHHHHhhccccchhccc--hhhHHHHHHH--HHHhhhcCCCCCCce
Q 008801 299 DPDFG--ESAIGRV---APVDSGLW------WIILLRAYGKITGDYALQER--VDVQTGIKLI--MNLCLADGFDMFPSL 363 (553)
Q Consensus 299 ~aDFG--e~AIGRV---apVDSgLW------WIILlraY~k~TGD~sla~~--pevQrGirlI--L~lCL~~~Fd~fPtL 363 (553)
--|.| |+.|-+. |.-|-.+| .++|+|.|.|-|+|-.|.+. |.+-.+|.++ +++|. |.-|-+
T Consensus 416 phDLg~~ehs~e~~iy~t~~d~~~wkDlgp~fVLlvYrdf~~T~D~eFL~e~y~~iv~~iD~~~~~d~d~----DgiP~~ 491 (721)
T COG4354 416 PHDLGPNEHSIEKPIYGTYQDPNLWKDLGPDFVLLVYRDFKFTNDREFLKEVYPVIVEAIDWLKRFDQDN----DGIPEN 491 (721)
T ss_pred CcccCccccchhcccccccCCchhhhhcCCcEEeeehhhhhhcccHHHHHHHHHHHHHHHHHHHhhcccC----CCCCcc
Confidence 35888 7888773 44455555 58899999999999999996 8888999988 56663 333332
Q ss_pred ee-cCCccccccccccCCCchhHHHHHHHHHHHHHHHhcccCCC--------CchHHHHHHHHHHHHHHHhhhhhcc
Q 008801 364 LV-TDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGS--------GSNNLVRAINNRLSALSFHIREYYW 431 (553)
Q Consensus 364 lV-pDg~~MIDRRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~--------~~~~~~~~I~~RL~aLs~hir~yYW 431 (553)
.- +|-+ .|-. -+.||.-+.=.||-+||-++.+|-+..... ..+.....+..-|..++.-.++|.|
T Consensus 492 ~g~~d~~--fDa~-~i~G~ssy~~sl~iaal~A~l~is~~l~~~~~~~a~~e~~~~~~~~y~~~L~~~~e~~~~~Lw 565 (721)
T COG4354 492 SGAMDNT--FDAT-RIQGHSSYCGSLFIAALIAALEISKYLLDNAQLEALNEASKNYVDFYNTWLKEAREAFNKYLW 565 (721)
T ss_pred cCCcccc--cccc-eeechhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 21 1111 1221 268999999999999999999987765330 1122444555555555554555444
No 21
>PRK13270 treF trehalase; Provisional
Probab=83.33 E-value=10 Score=42.63 Aligned_cols=128 Identities=15% Similarity=0.287 Sum_probs=77.9
Q ss_pred hcCCCCCCceeecCCccccc---cccccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhc
Q 008801 354 ADGFDMFPSLLVTDGSCMID---RRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYY 430 (553)
Q Consensus 354 ~~~Fd~fPtLlVpDg~~MID---RRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yY 430 (553)
.-|.|.-.--+ .|+.-|-+ +.+ .|.+.++++|.+.+.-.++.+.... .+-++...++-..++.=|.+++
T Consensus 322 ESGWDfSsRW~-~~~~~L~~i~T~~i----ipVDLNaiL~~~e~~LA~~a~~lG~---~~~a~~~~~~A~~r~~AI~~~L 393 (549)
T PRK13270 322 ASGWDYSSRWL-RDTGRLASIRTTQF----IPIDLNAFLYKLESAIANISALKGE---KETEALFRQKASARRDAVNRYL 393 (549)
T ss_pred HcCCCchhhcc-cCCcccccccccCc----chhhHHHHHHHHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHhc
Confidence 34666554433 44443333 223 6789999999999998888876432 2222333333333344445555
Q ss_pred ccchhhhhhhhccCCcccchhhhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHH
Q 008801 431 WVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQN 510 (553)
Q Consensus 431 WlD~~~ln~IyRykTEeYs~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs 510 (553)
|= +++|-|+==++..++. +-|+..|++-..+++++++|+
T Consensus 394 Wn---------------------------------------ee~G~~~DYD~~~~~~--~~~s~a~f~PLwaG~a~~~qa 432 (549)
T PRK13270 394 WD---------------------------------------DENGIYRDYDWRREQL--ALFSAAAIVPLYVGMANHEQA 432 (549)
T ss_pred cC---------------------------------------cccCeEEecccccCcc--ccccHHHHHHHHhCCCCHHHH
Confidence 61 1223333333333333 458999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCce
Q 008801 511 ESILNLIEAKWDDLVGHMPLK 531 (553)
Q Consensus 511 ~aIm~Lie~rW~dLvg~MPlK 531 (553)
+++.+.++.++.. .|-.|.-
T Consensus 433 ~~l~~~l~~~ll~-pGGl~tS 452 (549)
T PRK13270 433 DRLANAVRSRLLT-PGGILAS 452 (549)
T ss_pred HHHHHHHHHhccc-CCCcCCC
Confidence 9999998876654 4444443
No 22
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=75.10 E-value=35 Score=37.63 Aligned_cols=99 Identities=16% Similarity=0.290 Sum_probs=60.1
Q ss_pred CchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCcccchhhhcccCcCC
Q 008801 381 HPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYP 460 (553)
Q Consensus 381 ~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~a~NkFNI~p 460 (553)
.|...+++.|.+.++-.+|.+.... .+-++.-.+|-..++.-|++++|=+-+
T Consensus 305 ipVDLNa~L~~~e~~LA~~a~~lG~---~~~a~~~~~~A~~~~~aI~~~lWdee~------------------------- 356 (512)
T PF01204_consen 305 IPVDLNAILYRNEKDLAEFAELLGD---QEKAEEYRQRAEERKEAINQYLWDEED------------------------- 356 (512)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHTEETTT-------------------------
T ss_pred cCchHHHHHHHHHHHHHHHHHHcCc---hhHHHHHHHHHHHHHHHHHHhCccCCC-------------------------
Confidence 5889999999999999998887533 334444445555555566777774322
Q ss_pred CCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 008801 461 EQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWD 522 (553)
Q Consensus 461 esIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs~aIm~Lie~rW~ 522 (553)
|-|+==++..++. -+.++..|++-..+++++++|++++..-+.....
T Consensus 357 --------------g~~~Dyd~~~~~~-~~~~~~a~f~PL~ag~a~~~qa~~~~~~~l~~~~ 403 (512)
T PF01204_consen 357 --------------GFYYDYDLRTGKR-SPVFSPANFLPLWAGIASPEQAERLVARALDYLE 403 (512)
T ss_dssp --------------TEE--EETTTTEE-GG--BGGGGHHHHTT-S-HHHHHHHHHHHHHHCT
T ss_pred --------------CeEEeeeCCCCCC-cccccHHHHHHHHHhhcCHhhhhhHHHHHHHHHH
Confidence 2222112221111 2568999999999999999998877766655543
No 23
>PRK13272 treA trehalase; Provisional
Probab=74.55 E-value=28 Score=39.29 Aligned_cols=108 Identities=13% Similarity=0.187 Sum_probs=67.7
Q ss_pred CchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCcccchhhhcccCcCC
Q 008801 381 HPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYP 460 (553)
Q Consensus 381 ~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~a~NkFNI~p 460 (553)
.|.+.++|+|.+-+.-.++.+.... .+-++...+|...++.-|+.++| | . ..-.|-|
T Consensus 338 vpVDLNalL~~~e~~LA~~~~~lG~---~~~a~~~~~~A~~r~~aI~~~lW-d-e-~G~~~DY----------------- 394 (542)
T PRK13272 338 VPVDLNSLLYHLERTLAQACASSGL---AACSQDYAALAQQRKQAIDAHLW-N-P-AGYYADY----------------- 394 (542)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHhcc-C-c-CceEEee-----------------
Confidence 5899999999999988888775422 22233344444444445566667 3 1 1211111
Q ss_pred CCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCceec
Q 008801 461 EQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKIC 533 (553)
Q Consensus 461 esIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs~aIm~Lie~rW~dLvg~MPlKIC 533 (553)
++..++.- ..|+..|++-..++.++++|++++.+.++.++.. .|-+|.-..
T Consensus 395 --------------------D~~~~~~~-~~~s~a~f~PLwag~a~~~~a~~l~~~l~~~~l~-~gGlpTt~~ 445 (542)
T PRK13272 395 --------------------DWQTRTLS-EQVTAAALYPLFAGLASDDRAKRTADSVRAQLLR-PGGLATTAL 445 (542)
T ss_pred --------------------ccCCCCcc-ccccHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-CCCcCCCCC
Confidence 11111110 2588999999999999999999999988777653 455555443
No 24
>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=53 Score=35.10 Aligned_cols=41 Identities=34% Similarity=0.528 Sum_probs=32.1
Q ss_pred HHHHHHhhhc----CCCCCC-----ceeecCCccccccccccCCCchhHHHH
Q 008801 346 KLIMNLCLAD----GFDMFP-----SLLVTDGSCMIDRRMGIHGHPLEIQAL 388 (553)
Q Consensus 346 rlIL~lCL~~----~Fd~fP-----tLlVpDg~~MIDRRMgv~G~PLEIQaL 388 (553)
.+++++|+.+ .||.+| .|.|+-|. .|+=-..||+||+-|+.
T Consensus 109 ~l~l~l~~~~~~l~~~~~~~~h~RdiLVCTHgn--~D~cCarfG~P~Y~~~r 158 (316)
T COG4759 109 VLILALLLQGKELAQFDIYPQHTRDILVCTHGN--VDVCCARFGYPFYQQLR 158 (316)
T ss_pred hhHHHHhcCCccchhhccchhhhceEEEecCCC--hhhhhhhcCcHHHHHHH
Confidence 3677888865 499999 67788887 67777889999877765
No 25
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=24.05 E-value=1.4e+02 Score=24.42 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=32.9
Q ss_pred CchhHHHHHHHHHHHHHHHhcccCCCCchHHHH--HHHHHHHHHHHhh
Q 008801 381 HPLEIQALFYTALRCSREMLTVSDGSGSNNLVR--AINNRLSALSFHI 426 (553)
Q Consensus 381 ~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~--~I~~RL~aLs~hi 426 (553)
..=..+++..+||-+|.+++..... .++... .+.+|+..|...|
T Consensus 43 ~~~~~~~~vlaaLnla~e~~~~~~~--~~~~~~~~~l~~~i~~L~~~l 88 (89)
T PF05164_consen 43 KLSPERLAVLAALNLADELLKLKRE--LDELEELERLEERIEELNERL 88 (89)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHhh
Confidence 4446678888999999999998654 455555 8888888886543
No 26
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=22.17 E-value=93 Score=25.61 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.2
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhhhc
Q 008801 502 SSLGTPKQNESILNLIEAKWDDLVG 526 (553)
Q Consensus 502 ssLat~~Qs~aIm~Lie~rW~dLvg 526 (553)
.|+.|.+||.+|...|+++.+-..+
T Consensus 30 ~G~iTqeqAd~ik~~id~~~~~~~q 54 (59)
T PF10925_consen 30 AGVITQEQADAIKKHIDQRQEYMQQ 54 (59)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999876654
No 27
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=21.20 E-value=75 Score=25.38 Aligned_cols=37 Identities=27% Similarity=0.558 Sum_probs=30.3
Q ss_pred hhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHhhhhhc
Q 008801 490 RFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVG 526 (553)
Q Consensus 490 RfFsLGNllAILssLat~~Qs~aIm~Lie~rW~dLvg 526 (553)
=+..++=++|+..-++-..-.+.+++++..+|+++++
T Consensus 17 ~~lvlaaLvav~v~l~~s~~g~~~~~~l~~~w~~~~~ 53 (53)
T PF12555_consen 17 ALLVLAALVAVAVALLISPAGQSFLDLLADTWNDLAG 53 (53)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhC
Confidence 3566788888887777777779999999999999864
No 28
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=20.47 E-value=77 Score=24.27 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.3
Q ss_pred ccchhhHHHHHHHHHHh
Q 008801 336 QERVDVQTGIKLIMNLC 352 (553)
Q Consensus 336 a~~pevQrGirlIL~lC 352 (553)
...||||+|+..++++.
T Consensus 20 l~DpdvqrgL~~ll~~l 36 (42)
T PF07849_consen 20 LRDPDVQRGLGFLLAFL 36 (42)
T ss_pred HcCHHHHHHHHHHHHHH
Confidence 34599999999998876
Done!