Query 008803
Match_columns 553
No_of_seqs 141 out of 1216
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 16:46:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 3.2E-99 7E-104 795.2 25.6 494 10-537 167-735 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 2.4E-97 5E-102 818.5 37.3 493 11-531 120-680 (681)
3 PF03169 OPT: OPT oligopeptide 100.0 1.8E-80 3.8E-85 695.2 44.3 493 13-525 93-623 (624)
4 TIGR00728 OPT_sfam oligopeptid 100.0 2.2E-80 4.8E-85 695.9 31.3 487 11-523 109-649 (654)
5 TIGR00733 putative oligopeptid 100.0 7.5E-66 1.6E-70 564.6 38.8 468 18-526 88-590 (591)
6 COG1297 Predicted membrane pro 100.0 8.7E-51 1.9E-55 425.9 28.9 475 19-529 103-617 (624)
7 TIGR00733 putative oligopeptid 92.7 14 0.0003 41.9 20.7 152 361-523 84-266 (591)
8 PF03169 OPT: OPT oligopeptide 81.4 55 0.0012 37.3 16.7 28 464-491 216-243 (624)
9 COG1346 LrgB Putative effector 28.3 1.9E+02 0.0042 28.5 6.8 93 440-533 10-120 (230)
10 COG1297 Predicted membrane pro 22.8 7E+02 0.015 28.2 10.5 125 357-492 94-234 (624)
11 PF14715 FixP_N: N-terminal do 22.2 1.6E+02 0.0035 21.9 3.9 20 252-272 18-37 (51)
12 PRK04288 antiholin-like protei 21.2 3.9E+02 0.0083 26.6 7.5 91 442-532 14-122 (232)
13 PF11292 DUF3093: Protein of u 20.4 2.6E+02 0.0057 25.5 5.7 31 253-284 8-38 (143)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-99 Score=795.21 Aligned_cols=494 Identities=18% Similarity=0.260 Sum_probs=432.7
Q ss_pred cccccccccCChhHHHHHHHHH-------HHHHhhhcccccceeEecCCCCCCcHHHHHHHHHhhCCCcchhhh-hhhHH
Q 008803 10 EDTNLGYKNLSLTWIIGFLFVV-------SFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLA-KKQVR 81 (553)
Q Consensus 10 ~~~~~~~y~~~~~~~~~~~~~~-------gl~Gl~fa~plRr~lV~~~~l~~P~~la~a~ll~alh~~~~~~~a-~~r~~ 81 (553)
..+|+.||+++++++.++++.+ |++|++ ||++|+|.+|.||++|++++|+|+||++|+++++ .+|+|
T Consensus 167 i~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAGl~-----Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~r 241 (761)
T KOG2262|consen 167 ITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAGLF-----RKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYR 241 (761)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhcccHhhhh-----HhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchh
Confidence 3568899999999999998887 666666 9999999999999999999999999997655444 78999
Q ss_pred HHHHHHHHHHHHHHhhHh-hhc----cccccccc-----------cccccccccccceeeeccc--ccccccccccHHHH
Q 008803 82 TLGKFFSFSFLWGFFQWF-FTA----GDNCGFVS-----------FPTFGLKAYEYRFYFDFSA--IYVGVGMICPYIIN 143 (553)
Q Consensus 82 ~f~~~f~~~fv~~~~p~~-~~~----~~~c~~~~-----------~~~~Gl~~~~~~~~fDws~--~~~G~gli~p~~~~ 143 (553)
||.++|.++|+|+|+|++ |+. .|+||+.. ..|+|+++ ++|||++ +|+|+|+..|+++.
T Consensus 242 FF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~sg~~GLGi~~----~tlDW~~IssylgSPLasP~~a~ 317 (761)
T KOG2262|consen 242 FFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQIGSGLTGLGIGP----FTLDWSQISSYLGSPLASPFFAI 317 (761)
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHhccccccccccc----ccccHHHHHHHcCCcchhhHHHH
Confidence 999999999999999986 665 49999832 34667666 7899999 38999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcccCCCCCCCccccc---------------------hhhH----HHHHHHHHHHHHH
Q 008803 144 ISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGL---------------------QGYK----VFISIALILGDGL 198 (553)
Q Consensus 144 ~~~~~G~vl~~~il~P~l~~~~n~w~~~~~p~~s~~~~---------------------~~y~----~~~~~~~~~~~g~ 198 (553)
+|.++|.++..+|+.|++|| +|.|+.+++|+.|++.+ ++|+ +|+++.+++++|+
T Consensus 318 ~n~~~gfvl~~~IV~Pi~Y~-~n~~~a~~fPI~Ss~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl 396 (761)
T KOG2262|consen 318 ANVFLGFVLFIYIVLPILYW-TNTYDAKYFPIFSSSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGL 396 (761)
T ss_pred HHHhhhhhhhhhhhhhhHhh-ccceecceeceecCcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHH
Confidence 99999999999999999987 79999999999876432 2443 7999999999887
Q ss_pred --HHHHHHHHHHH----HHHHHHHHhhccCCCCCccCCCCCcccccccchhhhhhhccCCCCchHHHHHHHHHHHHHHHH
Q 008803 199 --YNFCKVLSRTL----VGLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSII 272 (553)
Q Consensus 199 --~~l~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~vP~ww~~~~~~~~~~l~~~ 272 (553)
+++.+.+.|++ |++|++.|+...+ ..| .|++-|++|||||.|||.+.++++++++++
T Consensus 397 ~faa~~a~i~Hv~Lf~gkdiw~~~~~~~~k--------~~D---------iHtrlMkkYKeVP~WWf~~ili~s~~l~~~ 459 (761)
T KOG2262|consen 397 GFAALSATIVHVALFNGKDIWQQTKKAFNK--------KMD---------IHTRLMKKYKEVPDWWFLAILIVSLGLGLA 459 (761)
T ss_pred HHHHHHHHhhhheeeccHHHHHHHHhcccc--------CCC---------HHHHHHHHhccCcHHHHHHHHHHHHHHHhh
Confidence 35566777865 8899888765421 123 344445579999999999999999999999
Q ss_pred Hhccccc--chhHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHhhhhccCCCChhHHHHHHHHHHHHHHHH
Q 008803 273 VLPHIFH--QLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVST 350 (553)
Q Consensus 273 ~~~~~~~--~lp~w~~iva~~l~~v~~~~~~~~~g~tg~~~~~~~~~i~~li~g~~~~~~~g~~~a~l~~~~~~~~~~~q 350 (553)
+++.+++ |+|||++++|+++++++++|.+.+.|+||++|+ +|+++|+|.||+.| |+|+|||.||.||++++.|
T Consensus 460 ~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~G--LNiitE~i~Gy~~P---grPiAn~~FK~yGyism~Q 534 (761)
T KOG2262|consen 460 ACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPG--LNIITEYIIGYIYP---GRPIANLCFKTYGYISMTQ 534 (761)
T ss_pred heeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCcc--HHHHHHHHHHhhcC---CchHHHHHHHHhchhhHHH
Confidence 9999988 899999999999999999999999999999999 99999999999996 9999999999999999999
Q ss_pred HHHhhhhhhhhhhcCCChhHHHHHHhHhhhhhhhhHHHHHHHHHhhcCCCCC--CCCCCCCchHHHHHHHHHh-hccCCC
Q 008803 351 ASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGV--PGSEYAAPFAMVYRNMAKL-GVEGFS 427 (553)
Q Consensus 351 A~~~~~DLK~G~y~~~pPr~~f~aQiiGtivg~~v~~~v~~~~~~~~~~i~~--~~~~~~~P~a~~~~s~a~~-g~~G~~ 427 (553)
|.+++||+|+|||||+|||.||.+|++||+++++|+.+|..|++.++|++|+ +++.||||..++++++|++ |++||+
T Consensus 535 al~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~~~s~~TCP~~rvffnASvIWGlIGP~ 614 (761)
T KOG2262|consen 535 ALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTDQNSPWTCPSDRVFFNASVIWGLIGPK 614 (761)
T ss_pred HHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCCCCCCccCCCCceEEeceeeeecccch
Confidence 9999999999999999999999999999999999999999999999999997 4579999999999999999 999999
Q ss_pred CCchh---hHHHHHHHHHHHH----HHHHHHhhhhcc-hhhhcchhhhhccccccchhhHHHHHHHHHHHH----HHHhc
Q 008803 428 ALPKN---CLLLCYVLFGAAI----VINLIRDSIRKE-WARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLF----IWEKI 495 (553)
Q Consensus 428 ~l~~~---~~~~~~~~~~~g~----~~~ll~~~~p~~-~~~~v~~p~~~~~~~~lp~~~~~~~~~G~~i~~----~~~r~ 495 (553)
|+|.. |..+.+ ++++|+ ++|+++|++|++ |.+++|.|+.+++...+||++..++..|.++++ +.+||
T Consensus 615 riF~~~g~Y~~l~w-FFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~ 693 (761)
T KOG2262|consen 615 RIFGSLGIYPGLNW-FFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRY 693 (761)
T ss_pred hhcCCCCccCcchH-HHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHH
Confidence 99952 544544 334444 489999999986 578899999999999999987766665555554 45788
Q ss_pred cchhhhhhhHHHhhhhhhhhHhhHHHHH-HHHhcCCCCCccee
Q 008803 496 DKAKADAFGPAVASGLICGDGIWSLPSS-ILALAKVQPPMCMK 537 (553)
Q Consensus 496 ~~~~~~ky~~~laagLiaG~al~gviia-~l~~~gv~~~~~~~ 537 (553)
++.||+||||++|||||||.+++|++++ +++..|++.+ ||-
T Consensus 694 ~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~~~~-WWG 735 (761)
T KOG2262|consen 694 RRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGISLN-WWG 735 (761)
T ss_pred HHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCCccc-ccc
Confidence 9999999999999999999999999999 8999999997 883
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=2.4e-97 Score=818.46 Aligned_cols=493 Identities=19% Similarity=0.264 Sum_probs=429.6
Q ss_pred ccccccccCChhHHHHHHHHH--HHHHhhhcccccceeEecCCCCCCcHHHHHHHHHhhCCCcchhhh---hhhHHHHHH
Q 008803 11 DTNLGYKNLSLTWIIGFLFVV--SFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLA---KKQVRTLGK 85 (553)
Q Consensus 11 ~~~~~~y~~~~~~~~~~~~~~--gl~Gl~fa~plRr~lV~~~~l~~P~~la~a~ll~alh~~~~~~~a---~~r~~~f~~ 85 (553)
.+|++|||++.+++.++++++ +++|..+|.|+||++|+|++|+||+++++++|+|+||++++++.. ++|+|+|++
T Consensus 120 ~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~ 199 (681)
T TIGR00727 120 LAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFL 199 (681)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHH
Confidence 468999999988888777765 899999999999999999999999999999999999986543222 489999999
Q ss_pred HHHHHHHHHHhhHh-hhc----cccccccc-----------cccccccccccceeeecccc--cccccccccHHHHHHHH
Q 008803 86 FFSFSFLWGFFQWF-FTA----GDNCGFVS-----------FPTFGLKAYEYRFYFDFSAI--YVGVGMICPYIINISVL 147 (553)
Q Consensus 86 ~f~~~fv~~~~p~~-~~~----~~~c~~~~-----------~~~~Gl~~~~~~~~fDws~~--~~G~gli~p~~~~~~~~ 147 (553)
+|+++|+|+|+|++ +|. .|.||+.. ..|+|+++. +|||||++ +.|+|+++|+++++|++
T Consensus 200 ~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g~~~GlGl~p~---~tfDW~~I~~~~~spL~~P~~a~~n~~ 276 (681)
T TIGR00727 200 VFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFGGSTGLGINPI---SSFDWNQISGYINSPLVYPAWSYLTIY 276 (681)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhccccCCCcCCc---CcccHHHHHhhcCCcccccHHHHHHHH
Confidence 99999999999986 676 49999933 235666664 88999995 58999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccCcccCCCCCCCccccch---------------------hhH----HHHHHHHHHHHHH--HH
Q 008803 148 LGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQ---------------------GYK----VFISIALILGDGL--YN 200 (553)
Q Consensus 148 ~G~vl~~~il~P~l~~~~n~w~~~~~p~~s~~~~~---------------------~y~----~~~~~~~~~~~g~--~~ 200 (553)
+|.++++++++|++|| +|.|+++++|++|++.+| +|+ +|+++++++.+|+ +.
T Consensus 277 ~G~~l~~~ii~P~lyy-~N~w~~~~lPi~s~~~fd~~G~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~ 355 (681)
T TIGR00727 277 LGCILAFWIVIPAVYY-SNTWYCQYLPISSNGLYDNFGHSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFAS 355 (681)
T ss_pred HHHHHHHHHHHHHHHH-cccccccccCCccchhhhcCCCccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHH
Confidence 9999999999999987 899999999999875331 343 8999999999988 55
Q ss_pred HHHHHHHHH----HHHHHHHHhhccCCCCCccCCCCCcccccccchhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhcc
Q 008803 201 FCKVLSRTL----VGLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPH 276 (553)
Q Consensus 201 l~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~vP~ww~~~~~~~~~~l~~~~~~~ 276 (553)
+.+.+.|++ +++++++|+.+ .+|.|.+.|++|||||+|||++++++++++++++++.
T Consensus 356 ~~a~i~h~~l~~~~~i~~~~~~~~-------------------~~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~~~v~~ 416 (681)
T TIGR00727 356 IPLMITHSIIVHGKLLFNALKDDD-------------------YPDPHSNLMKAYKEVPDWWYLAVFLGFFGMGIATVEH 416 (681)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcCC-------------------CCChhHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 667777776 55665554311 1234455556899999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHhhhhccCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 008803 277 IFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQ 356 (553)
Q Consensus 277 ~~~~lp~w~~iva~~l~~v~~~~~~~~~g~tg~~~~~~~~~i~~li~g~~~~~~~g~~~a~l~~~~~~~~~~~qA~~~~~ 356 (553)
+++++|||++++|+++++++.+|.+.++|+||++++ +|+++|+|.|++.| |||+|||++|++++++.+||.+++|
T Consensus 417 ~~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~--ln~l~eli~Gy~~P---G~p~a~~~fk~~g~~~~~qa~~~~~ 491 (681)
T TIGR00727 417 WPTETPVWGLFVCLIFNFVFLIPTTILQATTNISFG--LNVLTEFIVGYALP---GRPLAMMIFKTFGYITDGQADNFVS 491 (681)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccc--hhHHHHHHhhhccC---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 99999999999996 9999999999999999999999999
Q ss_pred hhhhhhhcCCChhHHHHHHhHhhhhhhhhHHHHHHHHHhhcCCCCCCC--CCCCCchHHHHHHHHHh-hccCCCCCch--
Q 008803 357 DFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPG--SEYAAPFAMVYRNMAKL-GVEGFSALPK-- 431 (553)
Q Consensus 357 DLK~G~y~~~pPr~~f~aQiiGtivg~~v~~~v~~~~~~~~~~i~~~~--~~~~~P~a~~~~s~a~~-g~~G~~~l~~-- 431 (553)
|||+|||+|+|||+||.+|++||++|++|++++++|++++.+|+|+++ ++|+||++++++++|++ |++||+|++.
T Consensus 492 DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g 571 (681)
T TIGR00727 492 DLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTADQNAKYTCPNAVVFFNASVIWGVIGPKRIFSHG 571 (681)
T ss_pred HhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCCccCCCccceeehehhhhhcchHHHcCCC
Confidence 999999999999999999999999999999999999999999999854 89999999999999999 9999999995
Q ss_pred -hhHHHHHH---HHHHHHHHHHHHhhhhcchhhhcchhhhhccccccchhhH----HHHHHHHHHHHHHHhccchhhhhh
Q 008803 432 -NCLLLCYV---LFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFA----IDMCVGSLLLFIWEKIDKAKADAF 503 (553)
Q Consensus 432 -~~~~~~~~---~~~~g~~~~ll~~~~p~~~~~~v~~p~~~~~~~~lp~~~~----~~~~~G~~i~~~~~r~~~~~~~ky 503 (553)
.|..+.+. |++++++.|+++|++||++.|++|+|+++++...+|++++ ....+|.+.+++.|||+++||+||
T Consensus 572 ~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~~~~~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kY 651 (681)
T TIGR00727 572 YIYPGLKWFWLIGACIGIFFWLVWKKWPKFYPRYLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKY 651 (681)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcchhhhhhCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHh
Confidence 25545443 3333334899999999999999999999999888887643 445677788888899999999999
Q ss_pred hHHHhhhhhhhhHhhHHHHH-HHHhcCCC
Q 008803 504 GPAVASGLICGDGIWSLPSS-ILALAKVQ 531 (553)
Q Consensus 504 ~~~laagLiaG~al~gviia-~l~~~gv~ 531 (553)
||++|||||+|+++++++++ ++++.|+.
T Consensus 652 nYvlsAald~G~a~~~~iiff~v~~~~~~ 680 (681)
T TIGR00727 652 NYVLSAGLDTGLVLSAIIIFFCLQLKDTA 680 (681)
T ss_pred hHHHHHHHHHHHHHHHhHheeEEEeCCCC
Confidence 99999999999999999999 67777653
No 3
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1.8e-80 Score=695.21 Aligned_cols=493 Identities=26% Similarity=0.411 Sum_probs=394.8
Q ss_pred ccccccCChhHHHHHHHH--HHHHHhhhcccccceeEecCCCCCCcHHHHHHHHHhhCCCcchhhhhhhHHHHHHHHHHH
Q 008803 13 NLGYKNLSLTWIIGFLFV--VSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFS 90 (553)
Q Consensus 13 ~~~~y~~~~~~~~~~~~~--~gl~Gl~fa~plRr~lV~~~~l~~P~~la~a~ll~alh~~~~~~~a~~r~~~f~~~f~~~ 90 (553)
|+.|||++.+++..+++. .+++|+.|++|+||++|+|++|+||+++|++++++++|++++.+++++|+|+|.++|.++
T Consensus 93 a~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~alh~~~~~~~~~~~~~~~~~~~~~~ 172 (624)
T PF03169_consen 93 ALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINALHSGGGWREAKSRAKFFGIAFLGS 172 (624)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHhccCccchhhhhhHhHHHHHHHHH
Confidence 678888887766555544 599999999999999999999999999999999999998775567889999999999999
Q ss_pred HHHHHhhHh-hhc----cccccccccccccccc-cccceeeecccccccccccccHHHHHHHHHHHHHHHHHHhhhhhhc
Q 008803 91 FLWGFFQWF-FTA----GDNCGFVSFPTFGLKA-YEYRFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKR 164 (553)
Q Consensus 91 fv~~~~p~~-~~~----~~~c~~~~~~~~Gl~~-~~~~~~fDws~~~~G~gli~p~~~~~~~~~G~vl~~~il~P~l~~~ 164 (553)
++|+++|.+ +|. .+.||+......+-.. -.++++||||++++|+|+++|+++++|+++|.+++|+++.|++||.
T Consensus 173 ~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~ 252 (624)
T PF03169_consen 173 FIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGLIVPLWAQLSMFLGAVLAWGIIIPILYYS 252 (624)
T ss_pred HHHHHHHHHHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCeeccHHHHHHHHHHHHHHHHhcCCeeeee
Confidence 999999974 444 5889986543222211 1225999999999999999999999999999999999999999875
Q ss_pred cCcccCCCCCCCccccc---------hhhHHHHHHHHHHHHHHHHH------H---HHHHHHHH----HHHHHHHhhccC
Q 008803 165 KGDWYSADLSPTSLQGL---------QGYKVFISIALILGDGLYNF------C---KVLSRTLV----GLFYQVRTRNAS 222 (553)
Q Consensus 165 ~n~w~~~~~p~~s~~~~---------~~y~~~~~~~~~~~~g~~~l------~---~~i~~~~~----~~~~~~~~~~~~ 222 (553)
+|.|++.++|+++++.+ .+|..|.+.+.+...+...+ . +.+.|.+. ++++.+++.+++
T Consensus 253 ~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 332 (624)
T PF03169_consen 253 GNAWGGAYLPFNSNSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKSS 332 (624)
T ss_pred ccccCCccccccchhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 59999999997776433 24668888888888777655 3 33344432 233222221111
Q ss_pred CCCCccCCCCCcccccccchhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhcccc--cchhHHHHHHHHHHHHHHHHhh
Q 008803 223 SDLPVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIF--HQLKCYHVLVIYLFAPTLAFCN 300 (553)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~vP~ww~~~~~~~~~~l~~~~~~~~~--~~lp~w~~iva~~l~~v~~~~~ 300 (553)
+.+.+++.+|+|++++++|+|+|+|||+.++++++++++++++.++ +++|+|+.++++++++++++|.
T Consensus 333 ----------~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~ 402 (624)
T PF03169_consen 333 ----------QRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPS 402 (624)
T ss_pred ----------ccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHH
Confidence 1111223346677777889999999999999999999999999998 8899999999999999999999
Q ss_pred hhhhhcccccchhhhhhHHHHHhhhhccCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChhHHHHHHhHhhh
Q 008803 301 AYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTA 380 (553)
Q Consensus 301 ~~~~g~tg~~~~~~~~~i~~li~g~~~~~~~g~~~a~l~~~~~~~~~~~qA~~~~~DLK~G~y~~~pPr~~f~aQiiGti 380 (553)
++++|+||++|.+++++++|+++|++.| ++|++||+++++++++++||+|++||||+|||+|+|||+||.+|++|++
T Consensus 403 ~~~~g~t~~~P~~~~~~~sqli~g~~~p---g~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ 479 (624)
T PF03169_consen 403 GRITGETGINPVSGLNILSQLIFGLLLP---GNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTI 479 (624)
T ss_pred HHHhhhcCCCcchhhhHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999986 8899999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhhcCCCCCC--CCCCCCchHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcch
Q 008803 381 IGCIVSPCVFWLFYKAFDDLGVP--GSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEW 458 (553)
Q Consensus 381 vg~~v~~~v~~~~~~~~~~i~~~--~~~~~~P~a~~~~s~a~~g~~G~~~l~~~~~~~~~~~~~~g~~~~ll~~~~p~~~ 458 (553)
+|+++++++++++.+++++..+. +..+++|++..|.+++ .+..||.+ ...|..+ .+++++|+++.++....
T Consensus 480 ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~-~g~~~~~~-~~~~~~~-~~~~~~G~~~~i~~~l~---- 552 (624)
T PF03169_consen 480 IGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVA-WGLIGPQR-GLPYSAL-PWGFLIGAVLPILFWLL---- 552 (624)
T ss_pred HHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHH-HHhcCCcc-cchHHHH-HHHHHHHHHHHHHHHHH----
Confidence 99999999999996665332221 2344445555554443 37778633 2222223 23456666644433222
Q ss_pred hhhcchhhhhc----cccccchhhHHHHHHHHHHHHHHHhccchhhhhhhHHHhhhhhhhhHhhHHHHHHH
Q 008803 459 ARFIPLPMAMA----IPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSIL 525 (553)
Q Consensus 459 ~~~v~~p~~~~----~~~~lp~~~~~~~~~G~~i~~~~~r~~~~~~~ky~~~laagLiaG~al~gviia~l 525 (553)
+|++|.+++++ +++++|++.+..+++|+++++++|||+++||+||||++|||||+||+|+|++++++
T Consensus 553 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laagl~aG~~l~~li~~~~ 623 (624)
T PF03169_consen 553 QRKFPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAAGLIAGEALMGLIIAFL 623 (624)
T ss_pred HhhCChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 23345568899 89999999999999999999999999999999999999999999999999999864
No 4
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=2.2e-80 Score=695.94 Aligned_cols=487 Identities=28% Similarity=0.475 Sum_probs=383.0
Q ss_pred ccccccccCChhHHHHHHHH----HHHHHhhhcccccceeEecCCCCCCcHHHHHHHHHhhCCC----cchhhhhhhHHH
Q 008803 11 DTNLGYKNLSLTWIIGFLFV----VSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTP----EGARLAKKQVRT 82 (553)
Q Consensus 11 ~~~~~~y~~~~~~~~~~~~~----~gl~Gl~fa~plRr~lV~~~~l~~P~~la~a~ll~alh~~----~~~~~a~~r~~~ 82 (553)
-+|++||+++.++.+++++. +|++|+.||+|+||++|+|++|+||+++|+++++++||++ ++.+.+|..+..
T Consensus 109 ~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~ 188 (654)
T TIGR00728 109 PAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKLPWPSGLATAELFKALHGKFHTANGDTIAKNLLRV 188 (654)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCcccccCCcccHHHHHHHHhhhccCccCCCccchhHHHh
Confidence 46899999887766643333 3779999999999999999999999999999999998543 222223322344
Q ss_pred HHHHHHHHHHHHHhhHhhhccccccccccccccccccccceeeeccc--ccccccccccHHHHHHHHHHHHHHHHHHhhh
Q 008803 83 LGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSA--IYVGVGMICPYIINISVLLGGILSWGLMWPL 160 (553)
Q Consensus 83 f~~~f~~~fv~~~~p~~~~~~~~c~~~~~~~~Gl~~~~~~~~fDws~--~~~G~gli~p~~~~~~~~~G~vl~~~il~P~ 160 (553)
+...|...+.|.++.|++|.... +....+.|+++ ++|||++ +++|+|+++|+++++|+++|++++|+++.|+
T Consensus 189 ~~~~f~~~~~~~~~~~~~p~~~~--~~~fgglg~~~----~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~ 262 (654)
T TIGR00728 189 LLKYFSSSFLWSFVSWFFPGFTA--FQTFGGLGSGS----IGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPI 262 (654)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc--ccccccccccc----cceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888777664211 11112334443 5677766 4789999999999999999999999999999
Q ss_pred hhhccCcccCCCCCCCccccchhhH-HHHHHHHHHHHHHHH-------------------------HHHHHHHHH----H
Q 008803 161 IEKRKGDWYSADLSPTSLQGLQGYK-VFISIALILGDGLYN-------------------------FCKVLSRTL----V 210 (553)
Q Consensus 161 l~~~~n~w~~~~~p~~s~~~~~~y~-~~~~~~~~~~~g~~~-------------------------l~~~i~~~~----~ 210 (553)
+|| +|.|+++++|+++++.+++|. +|.+++.+++++..+ +.+.+.|+. +
T Consensus 263 l~~-~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (654)
T TIGR00728 263 LYY-KNTWPADADPIDSSSTIDSTGVRYNSVGLIVVDGLWTLVKPLYPIYSPLVLSIDFYALLFNAFSDTIYSFALAHGR 341 (654)
T ss_pred HHh-cCccccccCCCcchhhhcCCCceeeeeeEEEeCCCceecHHHHHHhCcceeeHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 987 788888888988877666654 366655555544322 223334433 3
Q ss_pred HHHHHHHhhccCCCCCccCCCCCcccccccchhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhcccc--cchhHHHHHH
Q 008803 211 GLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIF--HQLKCYHVLV 288 (553)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~vP~ww~~~~~~~~~~l~~~~~~~~~--~~lp~w~~iv 288 (553)
++++.+|+...+ .+|.|++...++ .+.+|++|+|+|+|||+.++++++++++++++.++ +++|||++++
T Consensus 342 ~~~~~~~~~~~~--------~~~~~~~~~~~~-~d~~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~il 412 (654)
T TIGR00728 342 DIISARRDHYKL--------GRDDHVRLLSRD-EDLKVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIV 412 (654)
T ss_pred HHHHHHHHhhhc--------cCCCChHHHhhc-ccccccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHH
Confidence 333333332211 122232221111 11235579999999999999999999999888876 7899999999
Q ss_pred HHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHhhhhccCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCh
Q 008803 289 IYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASP 368 (553)
Q Consensus 289 a~~l~~v~~~~~~~~~g~tg~~~~~~~~~i~~li~g~~~~~~~g~~~a~l~~~~~~~~~~~qA~~~~~DLK~G~y~~~pP 368 (553)
++++++++++|.++++|+| +|.+++++++|++.|++.| |+|++||+++++++++++||+|++||||+|||+|+||
T Consensus 413 al~l~~i~~~~~~~~~g~t--np~~~l~~~~~li~g~~~p---g~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pP 487 (654)
T TIGR00728 413 ALIIAFVLAIPIGILAGIT--NPVSGLNIITELIIGYILP---GRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPP 487 (654)
T ss_pred HHHHHHHHHHhhhheEEee--cccchhhHHHHHhheeecC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 9999999999999999999 5566699999999999986 8999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhhhhhhhhHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHh-hccCCCCCchh---hHHHHHHHH--H
Q 008803 369 RSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKL-GVEGFSALPKN---CLLLCYVLF--G 442 (553)
Q Consensus 369 r~~f~aQiiGtivg~~v~~~v~~~~~~~~~~i~~~~~~~~~P~a~~~~s~a~~-g~~G~~~l~~~---~~~~~~~~~--~ 442 (553)
|+||.+|++|+++|+++++++++++.+++++ ++++|+||++++|+++|++ +++||+ +++. |..+.++++ +
T Consensus 488 R~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~---~~~~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G~ 563 (654)
T TIGR00728 488 RAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN---QNNNFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVGV 563 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHHH
Confidence 9999999999999999999999999999964 3578999999999999988 889976 6642 333333222 3
Q ss_pred HHHHHHHHHhhhhcchhhhcchhhhhccccccchhhHHHHH----HHHHHHHHHHhccchhh--hhhhHHHhhhhhhhhH
Q 008803 443 AAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMC----VGSLLLFIWEKIDKAKA--DAFGPAVASGLICGDG 516 (553)
Q Consensus 443 ~g~~~~ll~~~~p~~~~~~v~~p~~~~~~~~lp~~~~~~~~----~G~~i~~~~~r~~~~~~--~ky~~~laagLiaG~a 516 (553)
+.++.++.+|++|| ++|++|+|+++++++++|++++++++ +|++++++++||+++|| +||||++||||||||+
T Consensus 564 ~~i~~~~~~~~~p~-~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~a 642 (654)
T TIGR00728 564 GAVLVWLVRKLFPK-WIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEA 642 (654)
T ss_pred HHHHHHHHHHHccc-hhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHH
Confidence 33447888888887 78999999999999999999999999 99999999999888776 9999999999999999
Q ss_pred hhHHHHH
Q 008803 517 IWSLPSS 523 (553)
Q Consensus 517 l~gviia 523 (553)
|+|++++
T Consensus 643 l~gviif 649 (654)
T TIGR00728 643 LAGVIIF 649 (654)
T ss_pred HHHHHHH
Confidence 9999987
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=7.5e-66 Score=564.63 Aligned_cols=468 Identities=21% Similarity=0.306 Sum_probs=358.7
Q ss_pred cCChhHHHHHHHHHHHHHhhhcccccceeEecCCCCCCcHHHHHHHHHhhCCCcchhhhhhhHHHHHHHHHHHHHHHHhh
Q 008803 18 NLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQ 97 (553)
Q Consensus 18 ~~~~~~~~~~~~~~gl~Gl~fa~plRr~lV~~~~l~~P~~la~a~ll~alh~~~~~~~a~~r~~~f~~~f~~~fv~~~~p 97 (553)
+.++.....+.+..|++|++|++||||++|++++|+|||++||||++++.+ ++ + ++++.|.+...+..+.+|.+++
T Consensus 88 ~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g~--~g-~-~~~~~~~l~~g~~~s~~~~~~~ 163 (591)
T TIGR00733 88 EFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAGD--KA-R-NGTGAKPIAYGGILASIYAFLG 163 (591)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHccc--cc-c-chhhHHHHHHHHHHHHHHHHHH
Confidence 346778888888899999999999999999999999999999999999853 22 1 2345667777778888888875
Q ss_pred Hh--hhccccccccccccccccccccceeeecccccccccccccHHHHHHHHHHHHHHHHHHhhhhhhccCcccCCCCCC
Q 008803 98 WF--FTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSP 175 (553)
Q Consensus 98 ~~--~~~~~~c~~~~~~~~Gl~~~~~~~~fDws~~~~G~gli~p~~~~~~~~~G~vl~~~il~P~l~~~~n~w~~~~~p~ 175 (553)
.+ ++.....|. ..|...+ ++++||||+++|.||++|+++++++++|++++|+++.|++. .+.|++++.+.
T Consensus 164 ~~~~~~~~~~~~~----~~g~~~~--~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~--~~~~~~~~~~~ 235 (591)
T TIGR00733 164 SLRVWSGTLSAAK----LVGRRAL--YFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYT--AKMGSPGDLSA 235 (591)
T ss_pred HhccCCchHHHHH----hcCCcce--EEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCCccH
Confidence 33 121100010 1122222 57789999999999999999999999999999999999985 34676655443
Q ss_pred Ccc-ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCCcccccccchhhhhhhccCCC
Q 008803 176 TSL-QGLQ-GYKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLKDQ 253 (553)
Q Consensus 176 ~s~-~~~~-~y~~~~~~~~~~~~g~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 253 (553)
.+. ...+ .|.+|+|++.|++++++++.+..+.+++.+++.++..+++ + + .+ +.+|+ .+|
T Consensus 236 ~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~~~~~~~~----------~-~-~~---~~~r~----~~d 296 (591)
T TIGR00733 236 LDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAGLEAARRR----------Q-A-GE---AVLRT----EED 296 (591)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------c-c-cc---ccccc----ccc
Confidence 211 1122 4568899999999999999998888888877777654321 0 0 01 12233 368
Q ss_pred CchHHHHHHHHHHHHHHHHHhcccccchh--------H-HHHHHHHHHHHHHHHhhhhhhhc--ccccchhhhhhHHHHH
Q 008803 254 IPTWFAISGYVAIAIVSIIVLPHIFHQLK--------C-YHVLVIYLFAPTLAFCNAYGCGL--TDWSLASTYGKLAIFT 322 (553)
Q Consensus 254 vP~ww~~~~~~~~~~l~~~~~~~~~~~lp--------~-w~~iva~~l~~v~~~~~~~~~g~--tg~~~~~~~~~i~~li 322 (553)
+|.|+...+. +.+++. ..+.. .+.| + ...+++++++++++.+++++.|+ ||.||.+++++++|++
T Consensus 297 ip~~~v~~~~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~ 372 (591)
T TIGR00733 297 LPINIVLTLV-ALFVIP--LADFL-LYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLF 372 (591)
T ss_pred ccHHHHHHHH-HHHHHH--HHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHH
Confidence 9998754432 222222 11111 1222 2 45677777888888888899999 8889999999999999
Q ss_pred hhhhc--------cC-CCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChhHHHHHHhHhhhhhhhhHHHHHHHH
Q 008803 323 IGAWA--------GS-SHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLF 393 (553)
Q Consensus 323 ~g~~~--------~~-~~g~~~a~l~~~~~~~~~~~qA~~~~~DLK~G~y~~~pPr~~f~aQiiGtivg~~v~~~v~~~~ 393 (553)
++.+. +. .|+...+|++.+++++.+++||+|++||||+||++|++||+||++|++|+++|++++++++.++
T Consensus 373 ~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll 452 (591)
T TIGR00733 373 TALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLL 452 (591)
T ss_pred HHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 21 1467889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCC-----CCCCCCCchHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcchhhhcchhhhh
Q 008803 394 YKAFDDLGV-----PGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAM 468 (553)
Q Consensus 394 ~~~~~~i~~-----~~~~~~~P~a~~~~s~a~~g~~G~~~l~~~~~~~~~~~~~~g~~~~ll~~~~p~~~~~~v~~p~~~ 468 (553)
.++| +++. |+++|++|||.+|++++ .|+.+ +++++. ...++.++|+++.++++..+++++|+-.+++++
T Consensus 453 ~~ay-g~~~~~~~~~~~~l~APqA~l~~ava-~gi~~-~~l~~~---~i~~ga~~g~~l~~~~~~~~~~~~~~~~p~lav 526 (591)
T TIGR00733 453 IKAY-GIAGTPTAKGENALPAPQAFLMAAVT-EGVFT-GTLEWT---MVFIGAGIGIALIIIDEILAKRGSKFRTPVMAV 526 (591)
T ss_pred HHHh-cccccccCCCccccCCCHHHHHHHHH-hhhcC-CCccHH---HHHHHHHHHHHHHHHHHHhhhcccccCCchhHH
Confidence 9999 5432 45789999999999997 54444 234443 223456778888999988887666666678999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHhccchh------hhhhhHHHhhhhhhhhHhhHHHHHHHH
Q 008803 469 AIPFYLGPYFAIDMCVGSLLLFIWEKIDKAK------ADAFGPAVASGLICGDGIWSLPSSILA 526 (553)
Q Consensus 469 ~~~~~lp~~~~~~~~~G~~i~~~~~r~~~~~------~~ky~~~laagLiaG~al~gviia~l~ 526 (553)
++++|+|+++++++++|++++++|+|+.++. .+++++++||||++||+|+|++++++.
T Consensus 527 gig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~~~ 590 (591)
T TIGR00733 527 GVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAAII 590 (591)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHHHh
Confidence 9999999999999999999999999875432 246799999999999999999999753
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8.7e-51 Score=425.93 Aligned_cols=475 Identities=23% Similarity=0.321 Sum_probs=338.3
Q ss_pred CChhHHHHHHHHHHHHHhhhcccccceeEecCCCCCCcHHHHHHHHHhhCCCcchhhhhhhHHHHHHHHHHHHHHHHhhH
Q 008803 19 LSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQW 98 (553)
Q Consensus 19 ~~~~~~~~~~~~~gl~Gl~fa~plRr~lV~~~~l~~P~~la~a~ll~alh~~~~~~~a~~r~~~f~~~f~~~fv~~~~p~ 98 (553)
.++.+...+....|++|++|++||||.+|.++++|||||.|+||++++..++|++. +-.+-..+....+.+|.++..
T Consensus 103 fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAEvL~~g~~~~gd~---~g~~~i~~g~~~~~~~~~l~~ 179 (624)
T COG1297 103 FPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAEVLKAGNQREGDA---SGIKLIALGGALAALYSLLAS 179 (624)
T ss_pred CcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHHHHHHhcCCCCCCc---ccchhhhhhhHHHHHHHHHhc
Confidence 34556667777779999999999999999999999999999999999986434321 122233334444555555543
Q ss_pred h---hhccccccccccccccccccccceeeecccccccccccccHHHHHHHHHHHHHHHHHHhhhhhhccCcccCCCCCC
Q 008803 99 F---FTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSP 175 (553)
Q Consensus 99 ~---~~~~~~c~~~~~~~~Gl~~~~~~~~fDws~~~~G~gli~p~~~~~~~~~G~vl~~~il~P~l~~~~n~w~~~~~p~ 175 (553)
- .....-.|+. .|-..+ .+..|.|++++|.|+++|+.+.+.+++|..++|++.+|++- .+.|-|++...
T Consensus 180 g~~~~~~~~~~~~~----~~~~~~--~lg~~~S~AliG~GylvGl~~~iaml~G~~iaWgvavP~~~--~~~~~p~~~~~ 251 (624)
T COG1297 180 GLRVIASSLSAAFS----VGRAAF--ALGLGLSLALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLT--LIVPGPSDQEA 251 (624)
T ss_pred cceeehhhHHHHHH----hcchhh--hhcccccHHHhCceEEecchHHHHHHHHHHHHHHHHHHHHH--hcccCCCchhH
Confidence 1 1111111111 122222 25678889999999999999999999999999999999873 34454432211
Q ss_pred Ccc-cc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCCCcccccccchhhhhhhccCCC
Q 008803 176 TSL-QG-LQGYKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLKDQ 253 (553)
Q Consensus 176 ~s~-~~-~~~y~~~~~~~~~~~~g~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 253 (553)
... .. +..+.+|+++|.+...+++++.+...++.+++++.++..+.++ +.. +..|+ .+|
T Consensus 252 ~~~a~~vW~s~VrfIGaG~i~i~~~wtl~~l~~pi~~gi~~~f~~~r~~~-------------~~~--~~~rt----e~D 312 (624)
T COG1297 252 GVQAWKVWSSKVRFIGAGAIAIAAIWTLISLLGPILRGIKATFESARGRR-------------RAG--AVSRT----ERD 312 (624)
T ss_pred HHHHHHHhhheeEEeehhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc-------------ccc--cccch----hhc
Confidence 110 11 2234589999999999999999998899999988887665320 111 11233 267
Q ss_pred CchHHHHHHHHHHHHHHHHHhccccc------chhHH----HHHHHHHHHHHHHHhhhhhhhcccc--cchhhhhhHHHH
Q 008803 254 IPTWFAISGYVAIAIVSIIVLPHIFH------QLKCY----HVLVIYLFAPTLAFCNAYGCGLTDW--SLASTYGKLAIF 321 (553)
Q Consensus 254 vP~ww~~~~~~~~~~l~~~~~~~~~~------~lp~w----~~iva~~l~~v~~~~~~~~~g~tg~--~~~~~~~~i~~l 321 (553)
+|..|-... +++..+.+......+. ...|. ..++++++++.+.-.+++++|..+. +|.+++++++++
T Consensus 313 l~~~~~~~~-~~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~ 391 (624)
T COG1297 313 LPPKLVLLV-LLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVT 391 (624)
T ss_pred CChhhHHHH-HHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHH
Confidence 887775443 3444444433222111 12333 3444555566677788899998665 577777777777
Q ss_pred Hhhhhc---c---------C-CCChhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChhHHHHHHhHhhhhhhhhHHH
Q 008803 322 TIGAWA---G---------S-SHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPC 388 (553)
Q Consensus 322 i~g~~~---~---------~-~~g~~~a~l~~~~~~~~~~~qA~~~~~DLK~G~y~~~pPr~~f~aQiiGtivg~~v~~~ 388 (553)
+.+.++ + . ++....++++.+++++.++.+++|++|||||||++|++||+||.+|++|+++|+++..+
T Consensus 392 ~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~p 471 (624)
T COG1297 392 LLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAP 471 (624)
T ss_pred HHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHH
Confidence 664332 1 0 12334788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCC---CCCCCchHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcchhhhcchh
Q 008803 389 VFWLFYKAFDDLGVPG---SEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLP 465 (553)
Q Consensus 389 v~~~~~~~~~~i~~~~---~~~~~P~a~~~~s~a~~g~~G~~~l~~~~~~~~~~~~~~g~~~~ll~~~~p~~~~~~v~~p 465 (553)
|++++.++|..-+++. .+.++||+..+.+.+ .|+.+ +.+.|.+. ..+..+|+.+....++.++++.++-+++
T Consensus 472 vL~ll~~aYgf~ga~~r~~~~l~apqa~lma~ia-~Gvf~-~~lew~mi---~~g~~~gi~lI~id~~l~~~~~~~~lpv 546 (624)
T COG1297 472 VLELLNKAYGFAGAPPRQGMDLAAPQATLMATIA-KGVFT-GNLEWSMI---LAGAGIGIVLIGIDERLKGRGGKLRLPV 546 (624)
T ss_pred HHHHHHHHhCcCCCCCCCCCCCcchHHHHHHHHh-cccCC-CCcchHHH---HHHHhHhheeeeccHHHhcCCccccccc
Confidence 9999999995444422 239999999997776 45444 45555532 2344555556666666666778888899
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHHhcc-------chhhhhhhHHHhhhhhhhhHhhHHHHHHHHhcC
Q 008803 466 MAMAIPFYLGPYFAIDMCVGSLLLFIWEKID-------KAKADAFGPAVASGLICGDGIWSLPSSILALAK 529 (553)
Q Consensus 466 ~~~~~~~~lp~~~~~~~~~G~~i~~~~~r~~-------~~~~~ky~~~laagLiaG~al~gviia~l~~~g 529 (553)
+++|++.|+||+.++++++|++++|.++|+. ++..++.++++|||||.||+|+|++++.+...+
T Consensus 547 lAvGvGIylP~s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~ 617 (624)
T COG1297 547 LAVGVGIYLPPSLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGS 617 (624)
T ss_pred eeeeeeeecChhhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheec
Confidence 9999999999999999999999999998763 233567899999999999999999999877764
No 7
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=92.74 E-value=14 Score=41.90 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=84.3
Q ss_pred hhhcCCChhHHHHHHhHhhhhhhhhHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHhhccCCCCCchhhHHHHHHH
Q 008803 361 GYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVL 440 (553)
Q Consensus 361 G~y~~~pPr~~f~aQiiGtivg~~v~~~v~~~~~~~~~~i~~~~~~~~~P~a~~~~s~a~~g~~G~~~l~~~~~~~~~~~ 440 (553)
|+.-+.|..++...=+.|.++|.+...+.-+.+... ++++=|..++=+.+-+.+..|++ -. ....+.. +
T Consensus 84 g~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~--------~~L~fP~G~A~Ae~l~~g~~g~~-~~-~~~~l~~-g 152 (591)
T TIGR00733 84 GYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVE--------SKLPYPEGVACAEVLKAGDKARN-GT-GAKPIAY-G 152 (591)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------CCCCCCCHHHHHHHHHccccccc-hh-hHHHHHH-H
Confidence 433345667777777889999999998876666433 24555555442222111323210 11 1122222 2
Q ss_pred HHHHHHHHHHH--hhhhc---ch---------hhhcchhhhhccccccchhhHHHHHHHHHHHHHH-----Hh--ccch-
Q 008803 441 FGAAIVINLIR--DSIRK---EW---------ARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIW-----EK--IDKA- 498 (553)
Q Consensus 441 ~~~g~~~~ll~--~~~p~---~~---------~~~v~~p~~~~~~~~lp~~~~~~~~~G~~i~~~~-----~r--~~~~- 498 (553)
.+++.+..++. |.+|. .+ ...=.+|..+|.|+..++..+.+++.|++++|.. .+ ..+.
T Consensus 153 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~~~~ 232 (591)
T TIGR00733 153 GILASIYAFLGSLRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGSPGD 232 (591)
T ss_pred HHHHHHHHHHHHhccCCchHHHHHhcCCcceEEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 23333322221 11221 01 1113468889999999999999999999999874 12 1111
Q ss_pred ---h------hhhhhHHHhhhhhhhhHhhHHHHH
Q 008803 499 ---K------ADAFGPAVASGLICGDGIWSLPSS 523 (553)
Q Consensus 499 ---~------~~ky~~~laagLiaG~al~gviia 523 (553)
+ |.+|---++.|.+.++++..++..
T Consensus 233 ~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~ 266 (591)
T TIGR00733 233 LSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKL 266 (591)
T ss_pred ccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 1 221111268999999999998753
No 8
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=81.42 E-value=55 Score=37.33 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=23.9
Q ss_pred hhhhhccccccchhhHHHHHHHHHHHHH
Q 008803 464 LPMAMAIPFYLGPYFAIDMCVGSLLLFI 491 (553)
Q Consensus 464 ~p~~~~~~~~lp~~~~~~~~~G~~i~~~ 491 (553)
+++.++.++..|.....+++.|.++.|.
T Consensus 216 s~~~~g~g~i~p~~~~ls~~~G~v~~w~ 243 (624)
T PF03169_consen 216 SPILIGSGLIVPLWAQLSMFLGAVLAWG 243 (624)
T ss_pred cHHhcCCCeeccHHHHHHHHHHHHHHHH
Confidence 3455788999999999999999999985
No 9
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=28.29 E-value=1.9e+02 Score=28.52 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhhhcchhhhcchhhhhccccccc------hhhHHHHHHHHHHHHHHH-----------hccchhhhh
Q 008803 440 LFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLG------PYFAIDMCVGSLLLFIWE-----------KIDKAKADA 502 (553)
Q Consensus 440 ~~~~g~~~~ll~~~~p~~~~~~v~~p~~~~~~~~lp------~~~~~~~~~G~~i~~~~~-----------r~~~~~~~k 502 (553)
+..+-++.|.+.++.-+|+++..-+|+.++....+. .++..++--|-.+.++.. |+ .+.-+|
T Consensus 10 ~l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~Y~~g~~~i~~lLgPAtVAlAvPLYkq-~~~ik~ 88 (230)
T COG1346 10 GLLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLLFGISYEDYMKGGQWINFLLGPATVALAVPLYKQ-RHLIKR 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHcCCCHHHHhcccHHHHHHHHHHHHHHhhHHHHH-HHHHHH
Confidence 345555666666666555554333377766544332 223333333333333321 11 122344
Q ss_pred hhHHHhhhhhhhhHhhHHHHH-HHHhcCCCCC
Q 008803 503 FGPAVASGLICGDGIWSLPSS-ILALAKVQPP 533 (553)
Q Consensus 503 y~~~laagLiaG~al~gviia-~l~~~gv~~~ 533 (553)
|...+-+|..+|..++-+... +-+.+|.++.
T Consensus 89 ~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~ 120 (230)
T COG1346 89 HWKPILAGVLVGSVVAIISGVLLAKLFGLSPE 120 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 555666777777666555544 4566676654
No 10
>COG1297 Predicted membrane protein [Function unknown]
Probab=22.81 E-value=7e+02 Score=28.25 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=68.0
Q ss_pred hhhhhhhcCCChhHHHHHHhHhhhhhhhhHHHHHHHHHhhcCCCCCCCCCCCCchHHHHHHHHHhhccCCCCCchhhHHH
Q 008803 357 DFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLL 436 (553)
Q Consensus 357 DLK~G~y~~~pPr~~f~aQiiGtivg~~v~~~v~~~~~~~~~~i~~~~~~~~~P~a~~~~s~a~~g~~G~~~l~~~~~~~ 436 (553)
=++.||+-+-|=+.++..=..|.++|.+..++.-+-+ +- ++++|-|...+=+.+=+.|.. +++-+++....
T Consensus 94 l~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~------Iv--~skLPyPeGvAaAEvL~~g~~-~~gd~~g~~~i 164 (624)
T COG1297 94 LLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAM------IV--ESKLPYPEGVAAAEVLKAGNQ-REGDASGIKLI 164 (624)
T ss_pred HHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeee------ec--cCCCCCCCchhHHHHHHhcCC-CCCCcccchhh
Confidence 3678889999999999999999999998887633222 21 256777766552222111320 11111222222
Q ss_pred HHHHHHHHHHHHHHH---hhhhcc-------------hhhhcchhhhhccccccchhhHHHHHHHHHHHHHH
Q 008803 437 CYVLFGAAIVINLIR---DSIRKE-------------WARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIW 492 (553)
Q Consensus 437 ~~~~~~~g~~~~ll~---~~~p~~-------------~~~~v~~p~~~~~~~~lp~~~~~~~~~G~~i~~~~ 492 (553)
.+. ..++...-++. |..+.. ..... ++...|.+-++......++++|..++|-.
T Consensus 165 ~~g-~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~lg~~~-S~AliG~GylvGl~~~iaml~G~~iaWgv 234 (624)
T COG1297 165 ALG-GALAALYSLLASGLRVIASSLSAAFSVGRAAFALGLGL-SLALIGAGYLVGLPAGIAMLIGIFIAWGV 234 (624)
T ss_pred hhh-hHHHHHHHHHhccceeehhhHHHHHHhcchhhhhcccc-cHHHhCceEEecchHHHHHHHHHHHHHHH
Confidence 222 22222222221 111110 11122 34555556666677889999999999864
No 11
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=22.16 E-value=1.6e+02 Score=21.90 Aligned_cols=20 Identities=10% Similarity=0.516 Sum_probs=13.3
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 008803 252 DQIPTWFAISGYVAIAIVSII 272 (553)
Q Consensus 252 ~~vP~ww~~~~~~~~~~l~~~ 272 (553)
+.+|.||... +.++++++++
T Consensus 18 nplP~ww~~~-f~~tivfa~~ 37 (51)
T PF14715_consen 18 NPLPRWWLWL-FYGTIVFAVG 37 (51)
T ss_pred CCCCHHHHHH-HHHHHHHHHH
Confidence 6799998644 4566666654
No 12
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=21.23 E-value=3.9e+02 Score=26.55 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhhcch-hhhcchhhhhccccccc------hhhHHHHHHHHHHHHHHH----------hccchhhhhhh
Q 008803 442 GAAIVINLIRDSIRKEW-ARFIPLPMAMAIPFYLG------PYFAIDMCVGSLLLFIWE----------KIDKAKADAFG 504 (553)
Q Consensus 442 ~~g~~~~ll~~~~p~~~-~~~v~~p~~~~~~~~lp------~~~~~~~~~G~~i~~~~~----------r~~~~~~~ky~ 504 (553)
.+-++.|.+.++.-+|+ ++-+-+|+.++....+. .++..+.--|-++.++.. -+.++.-+|+-
T Consensus 14 ~lTl~~y~~~~~l~~r~~~~~~lnPll~s~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~~lk~~~ 93 (232)
T PRK04288 14 LVSLIAFGIGTILFKKSKGFFLFTPLFVAMVLGIAFLKLTGISYEEYNIGGDIISFFLEPATIAFAIPLYKKRDVLKKYW 93 (232)
T ss_pred HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHhCCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455666665554444 33333567666544332 223333333444444321 11223345666
Q ss_pred HHHhhhhhhhhHhhHHHHH-HHHhcCCCC
Q 008803 505 PAVASGLICGDGIWSLPSS-ILALAKVQP 532 (553)
Q Consensus 505 ~~laagLiaG~al~gviia-~l~~~gv~~ 532 (553)
..+..|+.+|..++-+... +.+.+|.++
T Consensus 94 ~~Il~~~~vG~~~~i~s~~~la~~lgl~~ 122 (232)
T PRK04288 94 WQILGGIVVGSVCSVLIIYLVAKLIQLDN 122 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 7778888888766655444 455666654
No 13
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=20.42 E-value=2.6e+02 Score=25.53 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=16.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcccccchhHH
Q 008803 253 QIPTWFAISGYVAIAIVSIIVLPHIFHQLKCY 284 (553)
Q Consensus 253 ~vP~ww~~~~~~~~~~l~~~~~~~~~~~lp~w 284 (553)
-+|.|||+.+..++..++.. +......++.|
T Consensus 8 ~~p~~wW~~~~~~~~~~~~~-v~~~~~~~~~~ 38 (143)
T PF11292_consen 8 WVPWWWWLAAAAVAALLAAE-VVLGPPSLWAW 38 (143)
T ss_pred CCCHHHHHHHHHHHHHHHHh-hhcCcchHHHH
Confidence 47888887775553333332 22233344444
Done!