Query 008803
Match_columns 553
No_of_seqs 141 out of 1216
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:03:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3llq_A Aquaporin Z 2; aquapori 28.3 3.9E+02 0.013 25.4 13.5 18 367-384 156-173 (256)
2 3arc_J Photosystem II reaction 13.3 1.8E+02 0.0063 19.4 3.1 27 376-402 12-38 (40)
3 2l5b_A Activator of apoptosis 11.1 1.6E+02 0.0056 18.2 2.2 26 427-452 3-28 (32)
4 2knc_A Integrin alpha-IIB; tra 10.2 2.3E+02 0.0078 20.4 3.1 11 252-262 8-18 (54)
5 2k1a_A Integrin alpha-IIB; sin 9.2 3.6E+02 0.012 18.3 3.6 11 252-262 6-16 (42)
6 3h3g_B Parathyroid hormone-rel 8.7 2E+02 0.0068 17.1 1.9 18 354-380 3-20 (24)
7 3mp7_B Preprotein translocase 8.2 4.4E+02 0.015 19.3 4.1 35 492-527 19-53 (61)
8 1rh5_B Preprotein translocase 6.2 5.8E+02 0.02 19.4 4.0 35 492-527 23-57 (74)
9 2wwb_B SEC61gamma, protein tra 6.1 4.9E+02 0.017 19.5 3.5 34 493-527 23-56 (68)
10 2l2t_A Receptor tyrosine-prote 6.1 1.7E+02 0.0058 20.1 0.8 10 535-544 30-39 (44)
No 1
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=28.28 E-value=3.9e+02 Score=25.40 Aligned_cols=18 Identities=33% Similarity=0.169 Sum_probs=12.3
Q ss_pred ChhHHHHHHhHhhhhhhh
Q 008803 367 SPRSMFVSQVIGTAIGCI 384 (553)
Q Consensus 367 pPr~~f~aQiiGtivg~~ 384 (553)
++.+.|..|+++|.+=.+
T Consensus 156 s~~~~f~~E~i~Tf~Lv~ 173 (256)
T 3llq_A 156 SLVSALLIEIILTAFFLI 173 (256)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 455678888888776433
No 2
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=13.31 E-value=1.8e+02 Score=19.41 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=21.3
Q ss_pred hHhhhhhhhhHHHHHHHHHhhcCCCCC
Q 008803 376 VIGTAIGCIVSPCVFWLFYKAFDDLGV 402 (553)
Q Consensus 376 iiGtivg~~v~~~v~~~~~~~~~~i~~ 402 (553)
++||+.|..|...+=..+..+|.++++
T Consensus 12 lvgtv~G~~vi~~~giFfyGsYsGlGS 38 (40)
T 3arc_J 12 IVATVAGMGVIVIVGLFFYGAYAGLGS 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSTTS
T ss_pred eeeeehhhhhhheeeEEEeecccccCC
Confidence 688888888877766778888988774
No 3
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=11.05 E-value=1.6e+02 Score=18.16 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=13.4
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHh
Q 008803 427 SALPKNCLLLCYVLFGAAIVINLIRD 452 (553)
Q Consensus 427 ~~l~~~~~~~~~~~~~~g~~~~ll~~ 452 (553)
..+|.+...++...-+.+...|+++|
T Consensus 3 ~~lp~yw~wlcaaa~vaalaawll~r 28 (32)
T 2l5b_A 3 GALPTYWPWLCAAAQVAALAAWLLGR 28 (32)
T ss_dssp TSCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHHHhc
Confidence 34565544444433344445677765
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.18 E-value=2.3e+02 Score=20.38 Aligned_cols=11 Identities=36% Similarity=1.114 Sum_probs=6.6
Q ss_pred CCCchHHHHHH
Q 008803 252 DQIPTWFAISG 262 (553)
Q Consensus 252 ~~vP~ww~~~~ 262 (553)
.++|.|.++.+
T Consensus 8 ~~vp~wiIi~s 18 (54)
T 2knc_A 8 RAIPIWWVLVG 18 (54)
T ss_dssp TTCCHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 46777766443
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=9.25 E-value=3.6e+02 Score=18.26 Aligned_cols=11 Identities=36% Similarity=1.114 Sum_probs=7.6
Q ss_pred CCCchHHHHHH
Q 008803 252 DQIPTWFAISG 262 (553)
Q Consensus 252 ~~vP~ww~~~~ 262 (553)
.++|.|.+..+
T Consensus 6 ~~vp~wiIi~s 16 (42)
T 2k1a_A 6 RAIPIWWVLVG 16 (42)
T ss_dssp CCCCHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 46888876554
No 6
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=8.71 E-value=2e+02 Score=17.09 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=13.5
Q ss_pred hhhhhhhhhhcCCChhHHHHHHhHhhh
Q 008803 354 LTQDFKTGYLTLASPRSMFVSQVIGTA 380 (553)
Q Consensus 354 ~~~DLK~G~y~~~pPr~~f~aQiiGti 380 (553)
-+||+| |.+|.-++++.+
T Consensus 3 s~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 3 SIQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp CHHHHH---------HHHHHHHHHHHH
T ss_pred cHHHHH---------HHHHHHHHHHHh
Confidence 368888 888888777643
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=8.16 E-value=4.4e+02 Score=19.28 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=20.1
Q ss_pred HHhccchhhhhhhHHHhhhhhhhhHhhHHHHHHHHh
Q 008803 492 WEKIDKAKADAFGPAVASGLICGDGIWSLPSSILAL 527 (553)
Q Consensus 492 ~~r~~~~~~~ky~~~laagLiaG~al~gviia~l~~ 527 (553)
++|-++..+++|.-+ +-.-..|-.++|++-+++++
T Consensus 19 lk~~~KPd~~Ef~~i-ak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 19 FLVTKKPNWATYKRA-AKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp HHHSCCCCTTHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444344445556544 33334477888888776654
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=6.18 E-value=5.8e+02 Score=19.41 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=20.1
Q ss_pred HHhccchhhhhhhHHHhhhhhhhhHhhHHHHHHHHh
Q 008803 492 WEKIDKAKADAFGPAVASGLICGDGIWSLPSSILAL 527 (553)
Q Consensus 492 ~~r~~~~~~~ky~~~laagLiaG~al~gviia~l~~ 527 (553)
++|-.+..+++|.-+ |-.-..|-.++|++-+++++
T Consensus 23 lk~~~KPdr~EF~~i-ak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 23 WLVLKKPTKDEYLAV-AKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHSEECCCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344333445556544 33334477888888876654
No 9
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=6.15 E-value=4.9e+02 Score=19.50 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=18.9
Q ss_pred HhccchhhhhhhHHHhhhhhhhhHhhHHHHHHHHh
Q 008803 493 EKIDKAKADAFGPAVASGLICGDGIWSLPSSILAL 527 (553)
Q Consensus 493 ~r~~~~~~~ky~~~laagLiaG~al~gviia~l~~ 527 (553)
+|-++..+++|.-+.-+. -.|-.++|++-+++++
T Consensus 23 k~~~KPdr~Ef~~iak~~-~iG~~i~G~IGf~Ikl 56 (68)
T 2wwb_B 23 KRCTKPDRKEFQKIAMAT-AIGFAIMGFIGFFVKL 56 (68)
T ss_dssp HHCCCCCTHHHHHHHHHS-SHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333333445565443333 3477888888886554
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.08 E-value=1.7e+02 Score=20.13 Aligned_cols=10 Identities=10% Similarity=0.321 Sum_probs=5.8
Q ss_pred ceeeccCccc
Q 008803 535 CMKFLSRRTN 544 (553)
Q Consensus 535 ~~~~~~~~~~ 544 (553)
+|-|++||..
T Consensus 30 ~~~~~RRRr~ 39 (44)
T 2l2t_A 30 FAVYVRRKSI 39 (44)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHhhhhhh
Confidence 5566666544
Done!