Query 008803
Match_columns 553
No_of_seqs 141 out of 1216
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 12:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008803.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008803hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtj1 f.23.32.1 (J:7-40) Pho 12.0 1.1E+02 0.0077 18.1 3.1 27 376-402 6-32 (34)
2 d1q90m_ f.23.25.1 (M:) PetM su 10.8 83 0.0061 18.2 2.3 17 509-525 2-18 (34)
3 d1otsa_ f.20.1.1 (A:) Clc chlo 5.5 7.6E+02 0.056 22.4 8.5 54 461-515 116-170 (444)
4 d1zava1 d.58.62.1 (A:1-177) Ri 4.1 2.3E+02 0.017 23.0 2.7 28 360-387 128-155 (177)
5 d1zcea1 b.122.1.8 (A:2-147) Hy 3.8 1.4E+02 0.01 24.0 0.9 16 349-364 34-49 (146)
6 d1j4na_ f.19.1.1 (A:) Aquapori 3.4 2.6E+02 0.019 23.8 2.7 18 373-390 101-118 (249)
7 d2evea1 b.122.1.8 (A:2-149) Hy 3.2 1.8E+02 0.013 23.3 1.2 15 349-363 31-45 (148)
8 d2gbsa1 b.122.1.8 (A:2-137) Hy 3.0 1.8E+02 0.013 22.9 0.9 16 349-364 33-48 (136)
9 d1rh5b_ f.23.28.1 (B:) Preprot 2.7 7.3E+02 0.053 16.1 3.7 15 512-526 31-45 (56)
10 d1ut3a_ g.9.1.1 (A:) Beta-defe 2.3 4.1E+02 0.03 15.3 1.6 15 42-56 7-21 (38)
No 1
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.02 E-value=1.1e+02 Score=18.14 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=20.6
Q ss_pred hHhhhhhhhhHHHHHHHHHhhcCCCCC
Q 008803 376 VIGTAIGCIVSPCVFWLFYKAFDDLGV 402 (553)
Q Consensus 376 iiGtivg~~v~~~v~~~~~~~~~~i~~ 402 (553)
++||+.|..|...+=..+..+|.++++
T Consensus 6 lv~tv~G~~vi~~vG~FfYGsYsGlGS 32 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFFYGAYAGLGS 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSTTS
T ss_pred EeeehhhhhhHhheeeeeeeeeccccc
Confidence 678888887777776777888877764
No 2
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.84 E-value=83 Score=18.23 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=12.2
Q ss_pred hhhhhhhHhhHHHHHHH
Q 008803 509 SGLICGDGIWSLPSSIL 525 (553)
Q Consensus 509 agLiaG~al~gviia~l 525 (553)
+++++|.++..+-+.++
T Consensus 2 a~fiagta~tmig~tl~ 18 (34)
T d1q90m_ 2 AEFIAGTALTMVGMTLV 18 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHHHHH
Confidence 67888888877666543
No 3
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=5.46 E-value=7.6e+02 Score=22.45 Aligned_cols=54 Identities=17% Similarity=0.026 Sum_probs=25.6
Q ss_pred hcchhhhhccccccchhhHHHHHHHHHHHHHHHhccc-hhhhhhhHHHhhhhhhhh
Q 008803 461 FIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDK-AKADAFGPAVASGLICGD 515 (553)
Q Consensus 461 ~v~~p~~~~~~~~lp~~~~~~~~~G~~i~~~~~r~~~-~~~~ky~~~laagLiaG~ 515 (553)
.+-+.+.++.|..+.++-+.. -+|+.++..+.|+.+ +..++....+++|.-+|.
T Consensus 116 ~~~~~~sl~~G~s~G~EGP~v-~iga~i~~~l~~~~~~~~~~~~r~l~~~GaaAgl 170 (444)
T d1otsa_ 116 FFGGLGTLGGGMVLGREGPTV-QIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGL 170 (444)
T ss_dssp HHHHHHHHHTTCSCBSHHHHH-HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccccccHH-HHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHH
Confidence 344445556666666655443 445555555544322 222222234555555543
No 4
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=4.06 E-value=2.3e+02 Score=22.98 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=22.8
Q ss_pred hhhhcCCChhHHHHHHhHhhhhhhhhHH
Q 008803 360 TGYLTLASPRSMFVSQVIGTAIGCIVSP 387 (553)
Q Consensus 360 ~G~y~~~pPr~~f~aQiiGtivg~~v~~ 387 (553)
+-.+.+.|.|...++|++|.+-+..-+.
T Consensus 128 i~~la~LPs~eel~a~l~~~L~ap~~~l 155 (177)
T d1zava1 128 VENIAKLPSKEELYAMLVGRVKAPITGL 155 (177)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhHHHHH
Confidence 3467889999999999999988765544
No 5
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.76 E-value=1.4e+02 Score=23.97 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=14.0
Q ss_pred HHHHHhhhhhhhhhhc
Q 008803 349 STASDLTQDFKTGYLT 364 (553)
Q Consensus 349 ~qA~~~~~DLK~G~y~ 364 (553)
.||-+++.|+|.|.++
T Consensus 34 yqArn~lr~Mk~GD~~ 49 (146)
T d1zcea1 34 YQARNNMRAMKIGDKG 49 (146)
T ss_dssp HHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHhccCCCEE
Confidence 5899999999999764
No 6
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.43 E-value=2.6e+02 Score=23.84 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=13.7
Q ss_pred HHHhHhhhhhhhhHHHHH
Q 008803 373 VSQVIGTAIGCIVSPCVF 390 (553)
Q Consensus 373 ~aQiiGtivg~~v~~~v~ 390 (553)
.+|++|.++|+.+...++
T Consensus 101 ~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 101 IAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred eHHHHHHHHHHhhheeec
Confidence 588999888887766654
No 7
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=3.22 E-value=1.8e+02 Score=23.31 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=13.2
Q ss_pred HHHHHhhhhhhhhhh
Q 008803 349 STASDLTQDFKTGYL 363 (553)
Q Consensus 349 ~qA~~~~~DLK~G~y 363 (553)
.||.+++.|+|.|-.
T Consensus 31 yqArn~lr~M~~GD~ 45 (148)
T d2evea1 31 YQARNFLRTMAEGDE 45 (148)
T ss_dssp HHHHHHHHHCCTTCE
T ss_pred HHHHHHHHhcccCCE
Confidence 489999999999954
No 8
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=3.02 E-value=1.8e+02 Score=22.90 Aligned_cols=16 Identities=13% Similarity=0.040 Sum_probs=13.6
Q ss_pred HHHHHhhhhhhhhhhc
Q 008803 349 STASDLTQDFKTGYLT 364 (553)
Q Consensus 349 ~qA~~~~~DLK~G~y~ 364 (553)
.||-++|.|+|.|-.+
T Consensus 33 yqArn~mr~M~~GD~~ 48 (136)
T d2gbsa1 33 HSAKLHMVAMRRGDRA 48 (136)
T ss_dssp HHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHHhccCCEE
Confidence 5899999999999653
No 9
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.68 E-value=7.3e+02 Score=16.09 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=9.9
Q ss_pred hhhhHhhHHHHHHHH
Q 008803 512 ICGDGIWSLPSSILA 526 (553)
Q Consensus 512 iaG~al~gviia~l~ 526 (553)
-.|-.++|++-+++.
T Consensus 31 ~iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 31 ALGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346678888777554
No 10
>d1ut3a_ g.9.1.1 (A:) Beta-defensin, BD {King penguin (Aptenodytes patagonicus), spheniscin-2 [TaxId: 9234]}
Probab=2.26 E-value=4.1e+02 Score=15.27 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=0.0
Q ss_pred ccceeEecCCCCCCc
Q 008803 42 LRKVMIIDFKLTYPS 56 (553)
Q Consensus 42 lRr~lV~~~~l~~P~ 56 (553)
|||-+--..+..||+
T Consensus 7 lrrgfcargrcrfps 21 (38)
T d1ut3a_ 7 LRRGFCARGRCRFPS 21 (38)
T ss_dssp SSSCEEESSSCCTTE
T ss_pred ccccccccccccCCC
Done!