Query 008804
Match_columns 553
No_of_seqs 472 out of 2935
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 12:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 8.2E-46 2.8E-50 376.2 43.2 444 87-552 4-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 6.6E-40 2.3E-44 329.1 25.6 397 94-536 27-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 1E-37 3.5E-42 311.9 33.1 365 98-529 29-426 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.7E-33 5.7E-38 285.5 31.0 400 132-542 49-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.6E-34 5.3E-39 282.4 12.8 356 99-521 4-362 (375)
6 2cfq_A Lactose permease; trans 100.0 5.7E-31 2E-35 260.3 6.6 360 132-543 38-407 (417)
7 2xut_A Proton/peptide symporte 100.0 2.3E-28 7.8E-33 249.9 23.3 402 134-546 51-513 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 3.9E-13 1.3E-17 134.1 17.4 145 132-277 283-433 (451)
9 3o7q_A L-fucose-proton symport 99.5 6.9E-13 2.3E-17 131.8 16.7 170 361-534 33-228 (438)
10 2cfq_A Lactose permease; trans 99.4 1.6E-12 5.6E-17 128.0 14.5 147 134-281 256-404 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.4 1.5E-12 5.2E-17 131.4 14.3 157 372-535 31-196 (491)
12 2gfp_A EMRD, multidrug resista 99.4 5.1E-13 1.7E-17 129.8 9.4 164 370-540 16-179 (375)
13 2xut_A Proton/peptide symporte 99.4 3.9E-11 1.3E-15 122.1 20.4 157 372-534 30-197 (524)
14 4gc0_A D-xylose-proton symport 99.1 3.4E-10 1.2E-14 114.1 11.9 151 132-282 307-468 (491)
15 2g9p_A Antimicrobial peptide l 66.9 3.1 0.00011 20.2 1.5 14 156-169 2-15 (26)
16 3mkt_A Multi antimicrobial ext 55.3 1.4E+02 0.0049 28.3 23.8 31 210-240 144-174 (460)
17 4dve_A Biotin transporter BIOY 22.4 1.5E+02 0.0053 24.5 5.6 24 144-167 100-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=8.2e-46 Score=376.17 Aligned_cols=444 Identities=33% Similarity=0.574 Sum_probs=346.6
Q ss_pred ccchhhhHHHHHHHHHHHHhhhchhhhccccccccCCCCCCC-cccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008804 87 AFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSG-TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG 165 (553)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~G 165 (553)
+++.+..+.+.++++++.+++|||.++++..++.+..+.... +...+.+..+.|++.+++.+|..+|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556677777788999999999999998888766431111 0002445678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------------hcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhH
Q 008804 166 RKRELIIAAVLYALGALTTA------------------YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL 227 (553)
Q Consensus 166 rk~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 227 (553)
||++++++.+++.+++++++ +++|+++++++|+++|++.|+..+...+++.|+.|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999998 478999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhhcccCCC-------CchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhhccCCCchhhhHH
Q 008804 228 ISLKELFIVLGILLGYFVGSFQINAV-------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKE 300 (553)
Q Consensus 228 ~~~~~~~~~lG~~~g~~l~~~l~~~~-------~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~~~~~~~~~~~~~ 300 (553)
.++.+.+..+|.++++.++..+.... .+||+.+.+..++.++..+..+++||+|+|+..+ ++.+
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~---------~~~~ 234 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSR---------GKQE 234 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHT---------TCHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHc---------Cchh
Confidence 99999999999999998877654321 2699999999999999999999999999999874 5556
Q ss_pred HHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHH
Q 008804 301 QAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 380 (553)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (553)
++.+.+++.+..+..++ +..+..+.. .++++.......++ .++..+......+.+..+.+.+.+|.+.+
T Consensus 235 ~a~~~l~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQ----AVQEIKHSL----DHGRKTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhHHHhcCCchhHH----HHHHHHHHH----HhhhhhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 66666665543211111 000100000 00111111111222 23445555666777788888899999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 008804 381 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVG 460 (553)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (553)
.+..+... ..........++..+++.++++++.||+|||+.+..+.....++++.+...... ....+..+...+++..
T Consensus 304 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 381 (491)
T 4gc0_A 304 FKTLGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVA 381 (491)
T ss_dssp HHHSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHhcCCCc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHH
Confidence 98888776 667777788889999999999999999999999999888888877776654432 2334444555556666
Q ss_pred HHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHH------hhCchhHHHHHHHHHHHHHHHHHH
Q 008804 461 CYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE------LLGAENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~ 534 (553)
++..+..++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.++
T Consensus 382 ~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~ 461 (491)
T 4gc0_A 382 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 461 (491)
T ss_dssp HHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 67777888888999999999999999999999999999999988876643 345667888999999999999999
Q ss_pred hcccCCCCCHHHHHhhhh
Q 008804 535 TVPETKGLSLEEIESKIL 552 (553)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~ 552 (553)
++||||+|++||+|+.++
T Consensus 462 ~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 462 FVPETKGKTLEELEALWE 479 (491)
T ss_dssp HCCCCTTCCHHHHGGGTC
T ss_pred eecCCCCCCHHHHHHHhC
Confidence 999999999999987665
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6.6e-40 Score=329.08 Aligned_cols=397 Identities=14% Similarity=0.086 Sum_probs=299.8
Q ss_pred HHHHHHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 008804 94 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 173 (553)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~ 173 (553)
+..+...+++.+..+++...+.+.++.+.++ + .+..+.|++.+++.++..++.+++|+++||+|||++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 3344556666777788888888888888776 8 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcc
Q 008804 174 AVLYALGALTTAY----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 249 (553)
Q Consensus 174 ~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l 249 (553)
.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCc-hHHHHhhhHHHHHHHHHH-hcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHH
Q 008804 250 INAVGG-WRYMYGLSAPLALLMGIG-MWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL 327 (553)
Q Consensus 250 ~~~~~~-wr~~f~~~~~~~~~~~i~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (553)
.+.. + ||+.|++.++++++..++ .+++||+|+....++.++ .++ + .+.+.++
T Consensus 179 ~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------~--~~~~~~~-- 232 (451)
T 1pw4_A 179 MAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE---YKN------------------D--YPDDYNE-- 232 (451)
T ss_dssp HHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT---TCC------------------C-----------
T ss_pred HHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh---hcc------------------c--ccccchh--
Confidence 7766 7 999999999888876654 466888775321100000 000 0 0000000
Q ss_pred HHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHH
Q 008804 328 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVM 406 (553)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 406 (553)
+++.+...++...+++++++.++...+..++..+.. ..+..+.|.++++ .+.+. .+.+.......++.+++
T Consensus 233 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 304 (451)
T 1pw4_A 233 ---KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPG 304 (451)
T ss_dssp ---------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHH
T ss_pred ---hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHH
Confidence 000001111111356677777666655444444333 3477788888887 56666 78899999999999999
Q ss_pred HHHHHHhhccc--CCchhhHhHHHHHH-HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccch
Q 008804 407 TWIAVAKVDDL--GRRPLLIGGVCGIA-LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 483 (553)
Q Consensus 407 ~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 483 (553)
.++.+++.||+ ++|+.+..+..+.. ++.+++.. .............+..+.+.....+....+..|.+|++.|
T Consensus 305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM----NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAA 380 (451)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS----CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhh
Confidence 99999999999 99988877666555 44333321 1111333333333444444444455556889999999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhc
Q 008804 484 GRGISLAVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV 536 (553)
Q Consensus 484 ~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 536 (553)
+++.|+.+.+..+ |..++|.+.|.+.+..|+...|++.+++.+++.++.++..
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999998888887777655543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1e-37 Score=311.87 Aligned_cols=365 Identities=16% Similarity=0.114 Sum_probs=285.8
Q ss_pred HHHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 008804 98 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 177 (553)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~ 177 (553)
+++++..+..+++....++.++.+.++ +|++..+.|++.+++.+++.++.+++|+++||+|||++++++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 344555677777777888888887766 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhccc-CCC
Q 008804 178 ALGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-NAV 253 (553)
Q Consensus 178 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~-~~~ 253 (553)
+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 889999999999999999999999999999999999999999999999999999999999999988 554
Q ss_pred Cc------------------------hHHHHhhhHHHHHHHHHHhcc--cCCchhHHHHhhccCCCchhhhHHHHHHHHH
Q 008804 254 GG------------------------WRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALG 307 (553)
Q Consensus 254 ~~------------------------wr~~f~~~~~~~~~~~i~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (553)
+. ||+.|++.+++.++..++.++ .||+++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------------------- 238 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN----------------------- 238 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC-----------------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc-----------------------
Confidence 23 999998888777766554433 34443200
Q ss_pred hHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHH-HHHc-C
Q 008804 308 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSA-G 385 (553)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 385 (553)
++ +.+++..+.+++++++++.++...+..++..... .....+.|.+ +++. +
T Consensus 239 ----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g 291 (438)
T 3o7q_A 239 ----HS-------------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPG 291 (438)
T ss_dssp ----CC-------------------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTT
T ss_pred ----cc-------------------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCC
Confidence 00 0001112234566788888777666555544433 3466788888 7776 6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcC
Q 008804 386 FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQIS 465 (553)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (553)
.+. .+++.......++.+++.++.+++.||++||+.+..+.++..++.+++.. .......+.. +..+++...
T Consensus 292 ~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~g~~~~~ 363 (438)
T 3o7q_A 292 MTA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF------AGGHVGLIAL-TLCSAFMSI 363 (438)
T ss_dssp CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHH-HHHHHHHTT
T ss_pred cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH------cCCcHHHHHH-HHHHHHHHH
Confidence 665 78899999999999999999999999999999998888777776655543 1222223333 333344445
Q ss_pred cccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhC-chhHHHHHHHHHHHHH
Q 008804 466 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAV 529 (553)
Q Consensus 466 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 529 (553)
..+..+.+..|.+|++ ++.+.++.. ...+|+.++|.+.|.+.+..| +...|++.+++.++..
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 5667778888998966 888888877 677999999999999999999 8888887655544433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.7e-33 Score=285.55 Aligned_cols=400 Identities=13% Similarity=0.056 Sum_probs=260.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 210 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr-~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 210 (553)
+|.+..+.+++.+++.++..++++++|+++|| +|||++++.+.++.+++.++++++++++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcccccc--chhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhh
Q 008804 211 APLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 288 (553)
Q Consensus 211 ~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~ 288 (553)
..+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+..++..+ ++...++
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~--~~~~~~~ 205 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGK--KTLDPHY 205 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHH--TTCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCc--ccccccc
Confidence 9999999999988 777888899999999999999999988877 9999999988877776655443211 1100000
Q ss_pred ccCCCchhhhHHHHHHHHHh----------------HhcCCCCCchhHHHHHHHH-HH-hhhccccccccccceeccccc
Q 008804 289 VQGKGSLQEYKEQAISALGK----------------LRRRPPGDKLSERQIEDTL-VS-LKSSYTDEKSEGSFLEVFQGP 350 (553)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 350 (553)
.+.+.+.+.++.++..+. ..+..+.++.......... .. .......+.+.....+..+..
T Consensus 206 --~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (491)
T 4aps_A 206 --LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVV 283 (491)
T ss_dssp --SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CT
T ss_pred --cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 001111112222221111 1111111111100000000 00 000000000000001111111
Q ss_pred chhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHc-CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhH-----
Q 008804 351 NLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSA-GFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI----- 424 (553)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~----- 424 (553)
......+...+.+... .....+.+.+.++. +.+. ...+.......++.+++.++.+++.||++||+...
T Consensus 284 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSW-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA 358 (491)
T ss_dssp THHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSS-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCc-cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence 2222232222222222 23455666666663 4432 56777778888889999999999999999987655
Q ss_pred hHHHHHHHHHHHHHHHHHhh---cCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHH
Q 008804 425 GGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIV 501 (553)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 501 (553)
.+..+.+++++++....... ............++.+.......+..+.+..|.+|++.|+++.|+.+....+|..++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~ 438 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655554432110 112333333444444555555566777899999999999999999999999999999
Q ss_pred HHHhHHhHHhhCchhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 008804 502 TFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 542 (553)
Q Consensus 502 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (553)
+.+.+.+.+ .++...|.+.+++.+++.++.+++.++.+++
T Consensus 439 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 439 AQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988766 4677788888888888777777666655544
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.6e-34 Score=282.44 Aligned_cols=356 Identities=13% Similarity=0.072 Sum_probs=271.8
Q ss_pred HHHHHHHhhhchhhhccccccccCCCCCCCcccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 008804 99 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 178 (553)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~ 178 (553)
++++..++.+++.....+.++.+.++ +|.+..+.+++.+++.++..++.+++|+++||+|||++++.+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 34555667777777888888887766 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHH
Q 008804 179 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 258 (553)
Q Consensus 179 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~ 258 (553)
++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++++.+.. +||+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~ 155 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988877 8999
Q ss_pred HHhhhHHHHHHHHH-HhcccCCchhHHHHhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccc
Q 008804 259 MYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 337 (553)
Q Consensus 259 ~f~~~~~~~~~~~i-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (553)
.|++.+++.++..+ ..+++||+++.. .+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~ 186 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETRPVD-------------------------------------------------APRT 186 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCSTTT-------------------------------------------------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCCC-------------------------------------------------cccc
Confidence 99999988888776 446677765410 0011
Q ss_pred cccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 008804 338 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 416 (553)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 416 (553)
+.+.++++++|+|.++...+...+..... ..+..+.|.++++ .+.+. .+.+.......++.+++.++.+++.||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r 261 (375)
T 2gfp_A 187 RLLTSYKTLFGNSGFNCYLLMLIGGLAGI----AAFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKR 261 (375)
T ss_dssp CTTTCSTHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHTTTTH
T ss_pred cHHHHHHHHhcCcchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334567778877776665544444333 2355666666655 56555 778889999999999999999999999
Q ss_pred cCCchhhHhHHHH-HHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHH
Q 008804 417 LGRRPLLIGGVCG-IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF 495 (553)
Q Consensus 417 ~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 495 (553)
.+++ ...+..+ ...+...+.... ....+.+...... +..+.......+....+..|..| ++|+++.|+.+....
T Consensus 262 ~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~ 336 (375)
T 2gfp_A 262 FSTL--MWQSVICCLLAGLLMWIPDW-FGVMNVWTLLVPA-ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQN 336 (375)
T ss_dssp HHHH--HHHHHHHHHHTSSSSSHHHH-HHHHHHHHHHHHH-HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHhh-hccccHHHHHHHH-HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHH
Confidence 8872 2222222 222222111111 0011222222233 33333334455666788999988 899999999999999
Q ss_pred HHHHHHHHHhHHhHHhhCchhHHHHH
Q 008804 496 GSNAIVTFAFSPLKELLGAENIFLLF 521 (553)
Q Consensus 496 ~g~~~~~~~~g~l~~~~g~~~~~~~~ 521 (553)
+|..++|.+.|.+.+..++...+.+.
T Consensus 337 ~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 337 IGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999998877766555543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=5.7e-31 Score=260.34 Aligned_cols=360 Identities=14% Similarity=0.089 Sum_probs=234.1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH---HHHHhcchH-HHHHHHHHHHHHHhhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA---LTTAYAPGL-GVLLVGRLLYGLGIGLA 207 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~---~~~~~~~~~-~~l~~~r~l~G~~~g~~ 207 (553)
+|.+..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ..+.+.+.. ..++..+++.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999888776532 222333222 12345566666655555
Q ss_pred hhhhhhHhhhcccc--ccchhHHhHHHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHH
Q 008804 208 MHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL 285 (553)
Q Consensus 208 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~ 285 (553)
.+.....+.++.++ ++|+...+.......+|..++|.+++++.+ . +||+.|++.+++.++..+..++.+|+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-- 193 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-I-NNQFVFWLGSGCALILAVLLFFAKTDAPS-- 193 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-H-CSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence 54445555555543 356777777777888999999999998876 3 79999999888766665555555443310
Q ss_pred HhhccCCCchhhhHHHHHHHHHhHhcCCCCCchhHHHHHHHHHHhhhccccccccccceecccccchhHHHHHHHHHHHH
Q 008804 286 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 365 (553)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (553)
+.+.++ ..+ ..+++....+++++++++.++...+........
T Consensus 194 ------~~~~~~--------------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 194 ------SATVAN--------------AVG------------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp ------SSCSSS--------------SSS------------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------cccccc--------------ccc------------------cccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 000000 000 000000111234567777666554432222221
Q ss_pred HhhChhhHHHhHHHHHHHcCCC---CchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHH
Q 008804 366 QITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 442 (553)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 442 (553)
. .....+.|.++.+.... .....+.......++.+++.++.+++.||+|||+.+..+..+.+++.+.+..
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--- 308 (417)
T 2cfq_A 236 Y----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--- 308 (417)
T ss_dssp H----HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred H----HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---
Confidence 1 12334466666543211 1134566777777888899999999999999999988777666665444322
Q ss_pred hhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHH-HHHHHHHHHHHHHHhHHhHHhhCchhHHHHH
Q 008804 443 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLGAENIFLLF 521 (553)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 521 (553)
..+.+..++.. +..+.......+..+.+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...|.+.
T Consensus 309 --~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 309 --ATSALEVVILK-TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp --CCSHHHHHHHT-THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred --hccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 12222222222 2222222222334467899999999999999994 7888999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHhcccCCCCC
Q 008804 522 AAIAFLAVLFIVRTVPETKGLS 543 (553)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~ 543 (553)
+++.+++.++.+...+|+++.+
T Consensus 386 ~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 386 GLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHhhhcCCCchH
Confidence 8888888776666666655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=2.3e-28 Score=249.85 Aligned_cols=402 Identities=10% Similarity=0.046 Sum_probs=226.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHhhhhhhhh
Q 008804 134 LSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMHGA 211 (553)
Q Consensus 134 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~-Grk~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 211 (553)
.+..+.|++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhHhhhccccccchhHHhH---HHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhcccCCchhHHHHhh
Q 008804 212 PLYIAETCPSQIRGTLISL---KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRA 288 (553)
Q Consensus 212 ~~~i~~~~~~~~r~~~~~~---~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~~e~p~~~~~~~ 288 (553)
.+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+.. +||+.|++.+++.++..+..++.++..+.
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~----- 204 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWLGRKRYIH----- 204 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHSSSSSCCC-----
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 9999999999999877666 89999999999999999988777 89999999988877766655433221100
Q ss_pred ccCCCchhhhHHHHHHHH-HhHhcCCCCCchhHHHHHHH----------------------------HHHhh--hcc---
Q 008804 289 VQGKGSLQEYKEQAISAL-GKLRRRPPGDKLSERQIEDT----------------------------LVSLK--SSY--- 334 (553)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~--~~~--- 334 (553)
.+.+ +++..+..+.. ...+.... +.......... ..+.+ ...
T Consensus 205 --~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (524)
T 2xut_A 205 --MPPE-PKDPHGFLPVIRSALLTKVE-GKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280 (524)
T ss_dssp --CC---------------------CT-THHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHH
T ss_pred --cCCC-CccchhHHHHHHHHHhhhhc-ccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHH
Confidence 0000 00000000000 00000000 00000000000 00000 000
Q ss_pred ccccccccceecccccchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 008804 335 TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKV 414 (553)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 414 (553)
+...+..+..+..+.+....... ..+........+.....+.+.+..+.+.+.....+.+.....++.+++.++.+++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (524)
T 2xut_A 281 ERARKSHPDAAVDGVRSVLRILV-LFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVL 359 (524)
T ss_dssp HHSCCSCCSSSSTTTTTHHHHHH-HHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-
T ss_pred hhhhccccHhHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhh
Confidence 00000000001111111111111 11111111111111222223333333221101344444444445555555554443
Q ss_pred ----cccCC----chhhHhHHHHHHHHHHHHHHHHHhh---cCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccch
Q 008804 415 ----DDLGR----RPLLIGGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 483 (553)
Q Consensus 415 ----d~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 483 (553)
+|.++ ++.+.++.++.+++++++....... .......++...++.+.+.....+..+.+..|..|++.|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 360 YPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp -----------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 44332 2344555555555554443211000 011222333334444444445566677889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhHHhh----------Cc-hhHHHHHHHHHHHHHHHHHHhcccCCCCCHHH
Q 008804 484 GRGISLAVLTNFGSNAIVTFAFSPLKELL----------GA-ENIFLLFAAIAFLAVLFIVRTVPETKGLSLEE 546 (553)
Q Consensus 484 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (553)
++++|+.++...+|+.++|.+.|.+.+.. +. ...|++.+++.+++.++.+++.++.++++.++
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 99999999999999999999999987632 21 22366677777777666666666655544433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.50 E-value=3.9e-13 Score=134.09 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=130.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHH-HHHHHHHhc--chHHHHHHHHHHHHHHhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL--GRKRELIIAAVLYA-LGALTTAYA--PGLGVLLVGRLLYGLGIGL 206 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~--Grk~~~~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 206 (553)
+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+++..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999 99999988887777 666666665 3778888888999999999
Q ss_pred hhhhhhhHhhhccccccchhHHhHHHHHHHH-HHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHhccc
Q 008804 207 AMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 277 (553)
Q Consensus 207 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~~~~ 277 (553)
..+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.. ||+..|++.+++.++..++.+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 9998999999999999999999999999999 9999999999998887 89999999998888877766544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.47 E-value=6.9e-13 Score=131.79 Aligned_cols=170 Identities=14% Similarity=0.034 Sum_probs=130.1
Q ss_pred HHHHHHhhChhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHH
Q 008804 361 LVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAY 440 (553)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 440 (553)
+.++.............|.+.++.+.+. .+.+++.....++..++.++.|+++||+|||+.+..+.++.+++.++....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 111 (438)
T 3o7q_A 33 SLFFLWAVANNLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA 111 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence 3333333334467777888888899887 899999999999999999999999999999999999999888888777332
Q ss_pred HHhhcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhH-HhhC------
Q 008804 441 YKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-ELLG------ 513 (553)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g------ 513 (553)
.. ......+....++.+.+.....+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 112 ~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 112 AE---IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred cc---cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 11 2233444444455555555556667799999999999999999999999999999999999998 5444
Q ss_pred -------------------chhHHHHHHHHHHHHHHHHHH
Q 008804 514 -------------------AENIFLLFAAIAFLAVLFIVR 534 (553)
Q Consensus 514 -------------------~~~~~~~~~~~~~~~~~~~~~ 534 (553)
|++.|++.+++.++..++.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677887777666655554443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.42 E-value=1.6e-12 Score=127.95 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=126.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhhhhh
Q 008804 134 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL 213 (553)
Q Consensus 134 ~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 213 (553)
.+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999888888888888888888888889888777777889
Q ss_pred HhhhccccccchhHHhH-HHHHHHHHHHHHHHhhhcccCCCCchHHHHhhhHHHHHHHHHHh-cccCCch
Q 008804 214 YIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGM-WSLPPSP 281 (553)
Q Consensus 214 ~i~~~~~~~~r~~~~~~-~~~~~~lG~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~i~~-~~~~e~p 281 (553)
++.|.+|++.|+++.++ ++....+|..++|.+++.+.+.. +++..|++.++++++..++. ++.+|.+
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999998 47888899999999999988766 89999999888888877654 4455544
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.41 E-value=1.5e-12 Score=131.39 Aligned_cols=157 Identities=17% Similarity=0.121 Sum_probs=122.8
Q ss_pred hHHHhHHHHHHH------cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc-cCCchhhHhHHHHHHHHHHHHHHHHHhh
Q 008804 372 SVLYYAGPILQS------AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL 444 (553)
Q Consensus 372 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (553)
....+.+.++++ .+.+. .+.++......++..++.++.|+++|| +|||+.+..+.++..++.+++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----- 104 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhccchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----
Confidence 455556666655 67766 889999999999999999999999999 89999999998888887776653
Q ss_pred cCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccc--hhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHH
Q 008804 445 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFA 522 (553)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 522 (553)
..+...+....++.+.+.....+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+..||++.|++.+
T Consensus 105 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 105 -PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp -CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2223333333444444444556677789999999988 7788888999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHh
Q 008804 523 AIAFLAVLFIVRT 535 (553)
Q Consensus 523 ~~~~~~~~~~~~~ 535 (553)
+..+++.++.++.
T Consensus 184 ~~~~~~~~~~~~~ 196 (491)
T 4aps_A 184 IGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777666655444
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.40 E-value=5.1e-13 Score=129.77 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=131.3
Q ss_pred hhhHHHhHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHhHHHHHHHHHHHHHHHHHhhcCchH
Q 008804 370 QPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPL 449 (553)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (553)
........|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+..... .+.
T Consensus 16 ~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH------HHH
T ss_pred HHHHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------ccH
Confidence 3345566777788888877 789999999999999999999999999999999999988888887776653 133
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHHHHHHHHHHHHHHHHHhHHhHHhhCchhHHHHHHHHHHHHH
Q 008804 450 VAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAV 529 (553)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 529 (553)
..+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|++.+++.++..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33444444455555555667778999999999999999999999999999999999999998899999988887777666
Q ss_pred HHHHHhcccCC
Q 008804 530 LFIVRTVPETK 540 (553)
Q Consensus 530 ~~~~~~~~~~~ 540 (553)
++.++..||++
T Consensus 169 ~~~~~~~~~~~ 179 (375)
T 2gfp_A 169 FSMARWMPETR 179 (375)
T ss_dssp CCCCCSSCCCS
T ss_pred HHHHHHCcccC
Confidence 64555566543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.35 E-value=3.9e-11 Score=122.10 Aligned_cols=157 Identities=12% Similarity=0.077 Sum_probs=120.8
Q ss_pred hHHHhHHHHHH-HcC------CCCchhhHHHHHHHHHHHHHHHHHHHHhhccc-CCchhhHhHHHHHHHHHHHHHHHHHh
Q 008804 372 SVLYYAGPILQ-SAG------FSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKI 443 (553)
Q Consensus 372 ~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (553)
....+++.++. +.+ .+. .+.+++.....++..++.++.|+++||+ |||+.+.++.++.+++.+++...
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--- 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--- 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---
Confidence 35556666654 456 666 7899999999999999999999999999 99999998888888777766541
Q ss_pred hcCchHHHHHHHHHHHHHHhcCcccchhhhhcccCCccchhhHHHH---HHHHHHHHHHHHHHHhHHhHHhhCchhHHHH
Q 008804 444 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL---AVLTNFGSNAIVTFAFSPLKELLGAENIFLL 520 (553)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 520 (553)
......+....++.+.......+...+++.|.+|+++|+++.+. .+....+|..++|.+.+.+.+..||+..|++
T Consensus 106 --~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 106 --EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp --SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 21333333444444555556667777999999999999776666 8888999999999999999998999999998
Q ss_pred HHHHHHHHHHHHHH
Q 008804 521 FAAIAFLAVLFIVR 534 (553)
Q Consensus 521 ~~~~~~~~~~~~~~ 534 (553)
.+++.+++.++.++
T Consensus 184 ~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 184 PGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH
Confidence 88777666554443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.10 E-value=3.4e-10 Score=114.11 Aligned_cols=151 Identities=18% Similarity=0.064 Sum_probs=110.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHhhh
Q 008804 132 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYA-----PGLGVLLVGRLLYGLGIGL 206 (553)
Q Consensus 132 ~~~s~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grk~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~ 206 (553)
.+.+............+...++.++.+++.||+|||+.++.+....+++.+..+.. ++...++..-+..+.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 45566677777778888999999999999999999999999988888777665542 2222222222222222233
Q ss_pred hhhhhhhHhhhccccccchhHHhHHHHHHHHHHHHHHHhhhcccCCC-----CchHHHHhhhHHHHHHHHHH-hcccCCc
Q 008804 207 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGIG-MWSLPPS 280 (553)
Q Consensus 207 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~g~~l~~~l~~~~-----~~wr~~f~~~~~~~~~~~i~-~~~~~e~ 280 (553)
..+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+.. .++.+.|++.++++++..+. ++++|||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 45667789999999999999999999999999999888776654321 14556788888888877664 4778998
Q ss_pred hh
Q 008804 281 PR 282 (553)
Q Consensus 281 p~ 282 (553)
..
T Consensus 467 kg 468 (491)
T 4gc0_A 467 KG 468 (491)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=66.95 E-value=3.1 Score=20.18 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=11.6
Q ss_pred HHHHhhhhhhhhHH
Q 008804 156 LVYSIADFLGRKRE 169 (553)
Q Consensus 156 ~~G~l~dr~Grk~~ 169 (553)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=55.34 E-value=1.4e+02 Score=28.29 Aligned_cols=31 Identities=3% Similarity=-0.271 Sum_probs=16.2
Q ss_pred hhhhHhhhccccccchhHHhHHHHHHHHHHH
Q 008804 210 GAPLYIAETCPSQIRGTLISLKELFIVLGIL 240 (553)
Q Consensus 210 ~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~ 240 (553)
.........+...+|.+...+......+-.+
T Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 174 (460)
T 3mkt_A 144 LLFQALRSFTDGMSLTKPAMVIGFIGLLLNI 174 (460)
T ss_dssp HHHHHHTTTTCTTSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3344445555556666666555555444433
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.44 E-value=1.5e+02 Score=24.52 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 008804 144 SGSLYGALLGSILVYSIADFLGRK 167 (553)
Q Consensus 144 s~~~~~~~i~~~~~G~l~dr~Grk 167 (553)
.-|.+|+.++..+.|++.+|..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 346677788888888888886543
Done!