Query 008806
Match_columns 553
No_of_seqs 285 out of 2151
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 16:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 2.1E-40 4.4E-45 333.9 35.9 532 6-538 79-622 (759)
2 KOG0211 Protein phosphatase 2A 100.0 8.1E-33 1.8E-37 279.2 34.1 472 17-488 167-648 (759)
3 KOG2171 Karyopherin (importin) 100.0 4.2E-28 9.2E-33 246.6 46.1 472 9-488 4-529 (1075)
4 KOG2171 Karyopherin (importin) 100.0 2.4E-26 5.3E-31 233.9 41.9 472 13-485 83-616 (1075)
5 KOG2023 Nuclear transport rece 99.9 1.1E-24 2.3E-29 208.1 31.6 224 7-231 11-285 (885)
6 KOG0213 Splicing factor 3b, su 99.9 2.1E-20 4.4E-25 180.9 38.0 503 11-524 365-1049(1172)
7 KOG1241 Karyopherin (importin) 99.9 1.8E-20 3.8E-25 182.5 36.7 473 14-488 95-693 (859)
8 KOG2023 Nuclear transport rece 99.9 4.9E-21 1.1E-25 183.3 30.6 438 43-485 9-527 (885)
9 KOG1824 TATA-binding protein-i 99.9 6.2E-20 1.3E-24 182.1 35.5 471 13-485 9-621 (1233)
10 KOG0213 Splicing factor 3b, su 99.9 1.4E-18 2.9E-23 168.5 40.0 467 14-485 481-1127(1172)
11 KOG1241 Karyopherin (importin) 99.9 7.8E-19 1.7E-23 171.2 38.0 471 11-484 131-732 (859)
12 COG5181 HSH155 U2 snRNP splice 99.9 3.9E-19 8.5E-24 168.9 30.5 460 11-485 170-932 (975)
13 KOG1242 Protein containing ada 99.9 7.4E-18 1.6E-22 162.5 36.8 458 19-483 27-500 (569)
14 PF01602 Adaptin_N: Adaptin N 99.8 4.6E-18 1E-22 176.1 33.6 460 5-485 38-503 (526)
15 PF01602 Adaptin_N: Adaptin N 99.8 8.1E-18 1.7E-22 174.3 33.9 434 10-464 80-523 (526)
16 KOG1242 Protein containing ada 99.8 1.5E-17 3.4E-22 160.4 32.9 433 50-488 19-466 (569)
17 PRK09687 putative lyase; Provi 99.8 1E-18 2.2E-23 161.3 23.6 253 165-462 25-279 (280)
18 PRK09687 putative lyase; Provi 99.8 2.2E-18 4.7E-23 159.1 23.0 253 127-423 25-279 (280)
19 KOG1824 TATA-binding protein-i 99.8 5.3E-16 1.2E-20 154.6 40.6 471 24-497 148-715 (1233)
20 PRK13800 putative oxidoreducta 99.8 7.5E-18 1.6E-22 181.9 28.1 241 167-463 625-865 (897)
21 PRK13800 putative oxidoreducta 99.8 9.2E-18 2E-22 181.2 26.4 274 127-462 623-896 (897)
22 PLN03200 cellulose synthase-in 99.8 4.3E-16 9.4E-21 172.2 38.1 467 11-488 276-793 (2102)
23 COG5215 KAP95 Karyopherin (imp 99.8 7.9E-15 1.7E-19 139.0 39.5 472 15-487 100-692 (858)
24 KOG1240 Protein kinase contain 99.8 6.3E-17 1.4E-21 165.1 26.0 290 139-443 437-742 (1431)
25 PLN03200 cellulose synthase-in 99.8 1.8E-15 3.9E-20 167.4 39.2 472 10-494 232-754 (2102)
26 COG5215 KAP95 Karyopherin (imp 99.8 3.3E-14 7.1E-19 134.8 39.4 452 21-472 190-718 (858)
27 KOG0212 Uncharacterized conser 99.7 8.3E-15 1.8E-19 138.7 30.1 375 93-468 7-409 (675)
28 COG5181 HSH155 U2 snRNP splice 99.7 2.2E-14 4.8E-19 137.0 31.9 435 14-465 286-947 (975)
29 PTZ00429 beta-adaptin; Provisi 99.7 6.5E-13 1.4E-17 137.3 43.5 433 10-469 33-511 (746)
30 KOG1240 Protein kinase contain 99.7 9E-16 2E-20 156.8 21.8 297 175-484 435-744 (1431)
31 KOG0212 Uncharacterized conser 99.7 1.5E-13 3.2E-18 130.4 31.9 411 56-468 9-447 (675)
32 KOG0915 Uncharacterized conser 99.7 7E-14 1.5E-18 146.5 30.5 427 56-484 827-1325(1702)
33 PTZ00429 beta-adaptin; Provisi 99.7 4.6E-12 9.9E-17 131.1 42.1 429 7-463 103-544 (746)
34 KOG0166 Karyopherin (importin) 99.7 6.9E-14 1.5E-18 134.7 26.5 308 160-467 106-438 (514)
35 KOG1943 Beta-tubulin folding c 99.6 1.3E-11 2.8E-16 126.1 36.3 452 11-466 343-882 (1133)
36 KOG0166 Karyopherin (importin) 99.5 3.3E-12 7.2E-17 123.3 25.4 331 97-427 77-437 (514)
37 KOG0915 Uncharacterized conser 99.5 7.1E-11 1.5E-15 124.5 34.4 433 13-447 822-1367(1702)
38 KOG1060 Vesicle coat complex A 99.5 1.7E-10 3.8E-15 114.0 33.0 449 11-485 37-551 (968)
39 KOG4224 Armadillo repeat prote 99.5 3.8E-12 8.2E-17 114.7 19.2 339 46-389 84-448 (550)
40 PF10508 Proteasom_PSMB: Prote 99.5 3.3E-10 7.2E-15 114.6 33.1 429 9-466 3-463 (503)
41 KOG4224 Armadillo repeat prote 99.4 2E-11 4.4E-16 110.1 18.3 339 11-350 87-448 (550)
42 PF10508 Proteasom_PSMB: Prote 99.4 1.1E-09 2.3E-14 111.0 31.4 338 128-466 41-421 (503)
43 KOG2259 Uncharacterized conser 99.3 1.1E-09 2.4E-14 106.5 24.4 396 56-469 88-515 (823)
44 COG1413 FOG: HEAT repeat [Ener 99.3 3.6E-09 7.8E-14 102.7 26.5 275 126-461 44-331 (335)
45 KOG1061 Vesicle coat complex A 99.2 1E-08 2.3E-13 102.3 28.1 438 7-465 11-489 (734)
46 KOG1062 Vesicle coat complex A 99.2 1.3E-07 2.9E-12 94.5 34.9 398 56-469 116-548 (866)
47 COG5240 SEC21 Vesicle coat com 99.2 3.7E-08 8E-13 94.6 29.4 293 160-464 261-554 (898)
48 KOG1061 Vesicle coat complex A 99.2 3.8E-09 8.1E-14 105.4 22.6 406 6-425 83-527 (734)
49 COG1413 FOG: HEAT repeat [Ener 99.2 5.9E-09 1.3E-13 101.2 23.9 251 163-467 43-306 (335)
50 TIGR02270 conserved hypothetic 99.2 9.3E-09 2E-13 99.9 24.8 241 164-465 55-296 (410)
51 TIGR02270 conserved hypothetic 99.2 1.1E-08 2.4E-13 99.3 25.0 240 126-425 55-295 (410)
52 KOG1020 Sister chromatid cohes 99.2 4.8E-07 1E-11 96.5 37.9 452 11-467 818-1407(1692)
53 KOG1060 Vesicle coat complex A 99.2 2.8E-07 6E-12 92.0 33.4 376 60-467 49-460 (968)
54 COG5064 SRP1 Karyopherin (impo 99.1 1.1E-09 2.4E-14 98.2 14.3 301 163-465 114-443 (526)
55 KOG2259 Uncharacterized conser 99.1 4.9E-08 1.1E-12 95.3 26.1 241 213-462 169-472 (823)
56 KOG1943 Beta-tubulin folding c 99.1 2.7E-06 5.8E-11 88.3 39.8 397 86-485 341-810 (1133)
57 PF12348 CLASP_N: CLASP N term 99.1 9.8E-09 2.1E-13 93.6 20.0 188 281-470 8-211 (228)
58 COG5064 SRP1 Karyopherin (impo 99.1 2.1E-09 4.6E-14 96.4 14.5 266 201-466 113-399 (526)
59 KOG1059 Vesicle coat complex A 99.1 2.3E-06 5E-11 84.8 33.9 333 122-469 141-494 (877)
60 KOG1059 Vesicle coat complex A 99.0 4.9E-06 1.1E-10 82.6 33.9 265 12-290 147-423 (877)
61 KOG1243 Protein kinase [Genera 99.0 1.2E-08 2.6E-13 101.0 15.8 253 172-426 263-515 (690)
62 PF12348 CLASP_N: CLASP N term 99.0 3.6E-08 7.9E-13 89.9 18.1 148 164-314 54-211 (228)
63 KOG1991 Nuclear transport rece 99.0 2E-05 4.3E-10 81.3 38.7 186 260-446 391-599 (1010)
64 KOG1248 Uncharacterized conser 99.0 4E-05 8.6E-10 80.8 40.5 350 125-478 518-910 (1176)
65 KOG1062 Vesicle coat complex A 99.0 7.8E-06 1.7E-10 82.3 33.9 420 13-459 111-575 (866)
66 COG5240 SEC21 Vesicle coat com 99.0 1.5E-07 3.2E-12 90.5 20.8 293 121-425 260-554 (898)
67 KOG1058 Vesicle coat complex C 99.0 2.7E-06 5.8E-11 84.7 30.0 433 11-468 22-466 (948)
68 KOG1077 Vesicle coat complex A 99.0 1.1E-05 2.3E-10 80.0 33.8 299 46-352 109-437 (938)
69 COG5096 Vesicle coat complex, 98.9 2E-05 4.3E-10 81.0 35.6 174 11-193 20-196 (757)
70 KOG1243 Protein kinase [Genera 98.9 3.5E-08 7.6E-13 97.7 15.6 254 213-468 265-518 (690)
71 KOG1248 Uncharacterized conser 98.9 3.1E-05 6.7E-10 81.6 36.2 349 84-434 516-906 (1176)
72 PF12460 MMS19_C: RNAPII trans 98.8 1.3E-05 2.7E-10 79.8 31.3 348 12-389 2-396 (415)
73 KOG1820 Microtubule-associated 98.8 2.2E-06 4.8E-11 89.3 26.2 336 126-471 64-449 (815)
74 KOG1991 Nuclear transport rece 98.8 0.00029 6.3E-09 73.1 41.3 149 337-486 390-555 (1010)
75 KOG4535 HEAT and armadillo rep 98.8 6.3E-06 1.4E-10 78.0 25.9 252 217-468 270-606 (728)
76 KOG2062 26S proteasome regulat 98.8 3.4E-06 7.4E-11 83.8 25.1 264 175-468 391-656 (929)
77 KOG1058 Vesicle coat complex C 98.8 2.2E-05 4.7E-10 78.5 30.2 390 57-468 30-428 (948)
78 COG5096 Vesicle coat complex, 98.7 8.6E-05 1.9E-09 76.4 33.4 412 1-427 47-520 (757)
79 KOG1992 Nuclear export recepto 98.7 0.00018 3.8E-09 73.1 32.6 416 6-428 2-529 (960)
80 KOG1020 Sister chromatid cohes 98.6 0.00045 9.7E-09 74.8 36.3 396 89-486 819-1275(1692)
81 KOG1077 Vesicle coat complex A 98.6 0.00054 1.2E-08 68.4 34.3 306 11-324 113-450 (938)
82 KOG1820 Microtubule-associated 98.6 2.8E-06 6.1E-11 88.5 20.0 193 198-394 249-450 (815)
83 KOG2274 Predicted importin 9 [ 98.6 0.0011 2.4E-08 68.2 37.9 173 291-466 502-690 (1005)
84 KOG1078 Vesicle coat complex C 98.6 5.7E-05 1.2E-09 76.1 26.7 54 409-464 478-531 (865)
85 KOG2137 Protein kinase [Signal 98.6 2.8E-06 6E-11 85.0 16.9 231 253-486 285-519 (700)
86 PF12460 MMS19_C: RNAPII trans 98.6 0.00026 5.6E-09 70.6 30.7 303 99-427 56-395 (415)
87 KOG1078 Vesicle coat complex C 98.6 0.00027 5.9E-09 71.4 30.1 283 201-499 244-527 (865)
88 KOG1992 Nuclear export recepto 98.5 0.00066 1.4E-08 69.1 32.0 481 7-490 85-692 (960)
89 KOG2137 Protein kinase [Signal 98.5 6.7E-06 1.5E-10 82.3 18.1 233 175-410 285-521 (700)
90 PF12755 Vac14_Fab1_bd: Vacuol 98.5 1.9E-06 4E-11 65.3 11.1 89 296-385 2-94 (97)
91 PF13646 HEAT_2: HEAT repeats; 98.5 6.8E-07 1.5E-11 67.7 8.9 85 361-461 2-88 (88)
92 KOG2062 26S proteasome regulat 98.5 1.7E-05 3.7E-10 79.1 19.8 247 138-412 427-680 (929)
93 PF12755 Vac14_Fab1_bd: Vacuol 98.5 2.2E-06 4.8E-11 64.9 10.8 89 374-463 2-94 (97)
94 KOG2032 Uncharacterized conser 98.5 0.00064 1.4E-08 65.3 29.3 254 202-465 258-531 (533)
95 PF13646 HEAT_2: HEAT repeats; 98.5 1.4E-06 3.1E-11 65.9 9.9 85 322-422 2-88 (88)
96 KOG1967 DNA repair/transcripti 98.4 0.0029 6.4E-08 65.4 34.0 182 280-463 815-1022(1030)
97 KOG0567 HEAT repeat-containing 98.4 5.2E-05 1.1E-09 66.6 18.7 217 166-422 39-276 (289)
98 PF05804 KAP: Kinesin-associat 98.4 0.00057 1.2E-08 71.0 29.1 361 105-472 268-655 (708)
99 PF12717 Cnd1: non-SMC mitotic 98.4 5.1E-05 1.1E-09 65.7 18.3 110 216-328 2-111 (178)
100 KOG0567 HEAT repeat-containing 98.4 0.00026 5.7E-09 62.3 21.8 221 207-468 41-283 (289)
101 KOG2032 Uncharacterized conser 98.4 0.002 4.4E-08 62.0 29.3 270 102-386 233-530 (533)
102 PF12717 Cnd1: non-SMC mitotic 98.4 6.5E-05 1.4E-09 65.1 18.2 111 293-406 1-111 (178)
103 KOG1293 Proteins containing ar 98.4 0.0027 5.8E-08 63.3 30.8 453 13-466 13-534 (678)
104 KOG0168 Putative ubiquitin fus 98.3 0.0013 2.7E-08 67.3 28.2 185 10-195 168-367 (1051)
105 PF04826 Arm_2: Armadillo-like 98.3 5.3E-05 1.1E-09 68.9 16.9 189 87-275 14-210 (254)
106 KOG2025 Chromosome condensatio 98.3 0.002 4.4E-08 64.6 28.7 221 105-345 61-291 (892)
107 KOG4413 26S proteasome regulat 98.3 0.00063 1.4E-08 61.7 23.1 316 145-465 63-439 (524)
108 PF04826 Arm_2: Armadillo-like 98.3 7.3E-05 1.6E-09 68.0 17.1 180 252-431 24-210 (254)
109 KOG0413 Uncharacterized conser 98.2 0.00082 1.8E-08 69.4 25.3 145 334-483 946-1091(1529)
110 PF05918 API5: Apoptosis inhib 98.2 0.00055 1.2E-08 68.5 23.9 257 99-367 35-315 (556)
111 KOG2025 Chromosome condensatio 98.2 0.0051 1.1E-07 61.9 29.8 198 206-423 89-291 (892)
112 COG5116 RPN2 26S proteasome re 98.2 3.4E-05 7.3E-10 74.7 14.3 249 145-410 393-675 (926)
113 PF05004 IFRD: Interferon-rela 98.2 0.00069 1.5E-08 64.0 22.5 203 285-487 48-285 (309)
114 cd00020 ARM Armadillo/beta-cat 98.2 1.3E-05 2.9E-10 64.6 9.2 106 359-464 8-119 (120)
115 PF05804 KAP: Kinesin-associat 98.2 0.015 3.3E-07 60.7 33.3 359 129-494 254-639 (708)
116 KOG2956 CLIP-associating prote 98.2 0.0001 2.2E-09 70.1 15.7 187 5-197 279-482 (516)
117 KOG4653 Uncharacterized conser 98.1 0.00043 9.3E-09 70.7 20.8 214 248-467 734-966 (982)
118 cd00020 ARM Armadillo/beta-cat 98.1 2.4E-05 5.2E-10 63.1 9.9 106 320-425 8-119 (120)
119 KOG2274 Predicted importin 9 [ 98.1 0.018 3.9E-07 59.7 38.1 113 371-485 463-581 (1005)
120 KOG4653 Uncharacterized conser 98.1 0.00058 1.3E-08 69.8 20.6 185 163-353 727-923 (982)
121 PF05918 API5: Apoptosis inhib 98.1 0.0019 4.2E-08 64.7 24.0 264 214-485 34-316 (556)
122 KOG0168 Putative ubiquitin fus 98.1 0.0039 8.5E-08 63.9 25.6 206 86-291 168-391 (1051)
123 KOG4535 HEAT and armadillo rep 98.1 0.00054 1.2E-08 65.4 18.4 302 21-351 267-606 (728)
124 KOG2956 CLIP-associating prote 98.1 0.00044 9.5E-09 65.9 17.7 33 280-312 448-480 (516)
125 KOG0413 Uncharacterized conser 98.0 0.018 4E-07 60.0 29.3 145 295-444 946-1091(1529)
126 COG5218 YCG1 Chromosome conden 98.0 0.021 4.5E-07 56.4 30.7 166 11-189 93-263 (885)
127 PF13513 HEAT_EZ: HEAT-like re 97.9 1.3E-05 2.7E-10 54.2 4.2 53 411-463 1-55 (55)
128 KOG0414 Chromosome condensatio 97.9 0.049 1.1E-06 58.4 38.2 136 350-492 911-1052(1251)
129 PF13001 Ecm29: Proteasome sta 97.9 0.0045 9.8E-08 63.1 23.3 370 86-469 24-447 (501)
130 PF13513 HEAT_EZ: HEAT-like re 97.9 5.4E-05 1.2E-09 51.1 6.1 53 333-385 1-55 (55)
131 PLN03076 ARF guanine nucleotid 97.9 0.028 6.1E-07 64.8 30.7 293 180-472 1109-1496(1780)
132 PF13001 Ecm29: Proteasome sta 97.9 0.0073 1.6E-07 61.6 24.1 220 202-425 237-487 (501)
133 COG5116 RPN2 26S proteasome re 97.8 0.0012 2.6E-08 64.4 16.7 137 165-313 518-654 (926)
134 KOG4413 26S proteasome regulat 97.8 0.027 5.8E-07 51.6 30.2 353 106-467 63-479 (524)
135 PF05004 IFRD: Interferon-rela 97.8 0.012 2.6E-07 55.7 22.9 183 167-349 47-258 (309)
136 PF02985 HEAT: HEAT repeat; I 97.8 5E-05 1.1E-09 44.0 4.1 30 164-193 1-30 (31)
137 COG5218 YCG1 Chromosome conden 97.7 0.019 4.2E-07 56.6 23.3 192 101-306 62-263 (885)
138 KOG0414 Chromosome condensatio 97.7 0.067 1.5E-06 57.4 28.7 150 311-466 911-1065(1251)
139 KOG1525 Sister chromatid cohes 97.7 0.029 6.3E-07 62.1 27.2 148 317-466 257-406 (1266)
140 KOG1949 Uncharacterized conser 97.7 0.0012 2.5E-08 66.1 15.0 146 125-270 174-331 (1005)
141 PF02985 HEAT: HEAT repeat; I 97.7 7.2E-05 1.6E-09 43.3 4.0 30 437-466 1-30 (31)
142 PF14500 MMS19_N: Dos2-interac 97.7 0.022 4.8E-07 52.4 22.2 222 168-394 4-244 (262)
143 KOG1949 Uncharacterized conser 97.7 0.0078 1.7E-07 60.5 19.8 145 281-425 175-330 (1005)
144 KOG2021 Nuclear mRNA export fa 97.6 0.12 2.6E-06 52.8 38.1 458 8-484 2-585 (980)
145 PLN03076 ARF guanine nucleotid 97.6 0.083 1.8E-06 61.1 28.9 269 123-391 1135-1493(1780)
146 KOG1993 Nuclear transport rece 97.5 0.14 3.1E-06 52.7 31.6 155 314-470 483-649 (978)
147 KOG1967 DNA repair/transcripti 97.5 0.0015 3.3E-08 67.4 13.4 148 160-307 864-1022(1030)
148 KOG2933 Uncharacterized conser 97.5 0.0055 1.2E-07 55.6 15.3 176 280-460 88-272 (334)
149 PF12719 Cnd3: Nuclear condens 97.5 0.046 1E-06 51.8 22.7 173 166-368 30-207 (298)
150 KOG1525 Sister chromatid cohes 97.5 0.019 4.1E-07 63.5 22.3 147 240-388 258-406 (1266)
151 PF14500 MMS19_N: Dos2-interac 97.5 0.066 1.4E-06 49.3 22.8 139 209-351 6-156 (262)
152 PF11864 DUF3384: Domain of un 97.5 0.14 3.1E-06 51.8 33.7 276 23-308 4-329 (464)
153 KOG1293 Proteins containing ar 97.5 0.14 3.1E-06 51.5 30.3 130 370-499 389-528 (678)
154 KOG1851 Uncharacterized conser 97.4 0.22 4.8E-06 55.3 28.2 74 394-467 1523-1600(1710)
155 KOG1851 Uncharacterized conser 97.4 0.35 7.6E-06 53.8 29.5 155 317-472 1524-1685(1710)
156 PF01347 Vitellogenin_N: Lipop 97.3 0.052 1.1E-06 57.7 22.9 231 162-419 362-615 (618)
157 KOG1822 Uncharacterized conser 97.3 0.54 1.2E-05 53.5 33.2 231 39-269 867-1126(2067)
158 COG5098 Chromosome condensatio 97.3 0.27 5.8E-06 50.0 33.2 150 311-466 884-1038(1128)
159 COG5234 CIN1 Beta-tubulin fold 97.3 0.15 3.3E-06 51.7 23.1 433 16-465 253-758 (993)
160 KOG1517 Guanine nucleotide bin 97.2 0.011 2.3E-07 62.2 15.4 186 5-194 468-673 (1387)
161 KOG1517 Guanine nucleotide bin 97.2 0.012 2.5E-07 62.0 15.1 222 165-389 474-734 (1387)
162 KOG1822 Uncharacterized conser 97.2 0.11 2.5E-06 58.5 23.3 282 144-426 803-1127(2067)
163 PF12719 Cnd3: Nuclear condens 97.2 0.036 7.7E-07 52.6 17.6 103 11-115 28-143 (298)
164 PF01347 Vitellogenin_N: Lipop 97.1 0.053 1.1E-06 57.6 20.4 152 213-382 446-617 (618)
165 smart00638 LPD_N Lipoprotein N 96.9 0.12 2.6E-06 54.3 20.5 168 83-263 394-571 (574)
166 KOG0946 ER-Golgi vesicle-tethe 96.9 0.66 1.4E-05 48.1 32.5 222 126-347 123-398 (970)
167 smart00638 LPD_N Lipoprotein N 96.9 0.15 3.4E-06 53.5 20.9 125 253-385 409-543 (574)
168 PF08506 Cse1: Cse1; InterPro 96.8 0.072 1.6E-06 51.7 16.4 124 294-420 225-369 (370)
169 KOG0392 SNF2 family DNA-depend 96.8 0.083 1.8E-06 57.1 17.1 216 251-468 87-328 (1549)
170 PF12530 DUF3730: Protein of u 96.7 0.43 9.4E-06 43.3 20.7 192 249-449 9-216 (234)
171 KOG2933 Uncharacterized conser 96.7 0.019 4.1E-07 52.3 10.5 171 7-183 86-268 (334)
172 KOG1993 Nuclear transport rece 96.6 1.1 2.5E-05 46.5 32.5 294 47-347 487-811 (978)
173 KOG0891 DNA-dependent protein 96.6 2.1 4.5E-05 51.3 28.1 452 16-481 488-1055(2341)
174 PF10363 DUF2435: Protein of u 96.6 0.034 7.4E-07 41.7 9.5 81 402-487 8-89 (92)
175 PF13251 DUF4042: Domain of un 96.5 0.09 2E-06 45.1 12.6 106 362-467 44-176 (182)
176 KOG2213 Apoptosis inhibitor 5/ 96.4 0.87 1.9E-05 43.2 20.2 242 142-390 41-317 (460)
177 PF10363 DUF2435: Protein of u 96.4 0.032 6.9E-07 41.9 8.4 70 165-234 5-75 (92)
178 PF11865 DUF3385: Domain of un 96.3 0.032 6.9E-07 47.1 9.2 74 315-388 82-158 (160)
179 KOG2081 Nuclear transport regu 96.3 1.3 2.9E-05 44.2 31.6 315 161-485 151-513 (559)
180 PF10274 ParcG: Parkin co-regu 96.2 0.15 3.2E-06 43.4 12.5 115 356-470 36-169 (183)
181 PF13251 DUF4042: Domain of un 96.2 0.052 1.1E-06 46.5 9.9 147 101-270 1-174 (182)
182 KOG2213 Apoptosis inhibitor 5/ 96.2 0.59 1.3E-05 44.2 17.1 70 415-485 219-289 (460)
183 PF11865 DUF3385: Domain of un 96.2 0.081 1.7E-06 44.7 10.8 142 318-467 9-159 (160)
184 PF08506 Cse1: Cse1; InterPro 96.1 0.41 9E-06 46.6 16.7 48 215-263 321-368 (370)
185 PF12530 DUF3730: Protein of u 96.0 1.1 2.5E-05 40.6 21.2 192 171-371 9-216 (234)
186 KOG0392 SNF2 family DNA-depend 96.0 0.53 1.2E-05 51.3 17.9 170 296-468 749-928 (1549)
187 KOG2160 Armadillo/beta-catenin 96.0 0.21 4.6E-06 46.8 13.2 135 19-153 93-239 (342)
188 PF14664 RICTOR_N: Rapamycin-i 95.9 1.8 3.9E-05 42.2 20.9 171 140-310 83-270 (371)
189 KOG2005 26S proteasome regulat 95.8 1.2 2.6E-05 45.4 18.2 286 126-431 416-709 (878)
190 PF11864 DUF3384: Domain of un 95.8 2.6 5.7E-05 42.8 31.4 257 9-269 24-329 (464)
191 COG5098 Chromosome condensatio 95.7 3 6.5E-05 42.8 27.9 107 360-466 301-416 (1128)
192 KOG2011 Sister chromatid cohes 95.7 3.9 8.4E-05 44.7 22.6 130 329-461 297-431 (1048)
193 PF10274 ParcG: Parkin co-regu 95.6 0.3 6.4E-06 41.6 11.8 116 278-393 36-170 (183)
194 cd08050 TAF6 TATA Binding Prot 95.6 0.25 5.3E-06 47.7 12.9 140 162-308 177-339 (343)
195 PF05536 Neurochondrin: Neuroc 95.5 3.7 8E-05 42.5 22.5 177 295-473 72-269 (543)
196 KOG2011 Sister chromatid cohes 95.5 2.8 6E-05 45.7 20.8 98 366-463 295-397 (1048)
197 KOG0803 Predicted E3 ubiquitin 95.4 0.97 2.1E-05 50.8 17.9 225 10-254 42-289 (1312)
198 COG5101 CRM1 Importin beta-rel 95.2 4.2 9.1E-05 41.4 30.0 160 116-275 472-653 (1053)
199 PF05536 Neurochondrin: Neuroc 95.2 4.6 0.0001 41.8 32.2 152 202-354 98-267 (543)
200 PF08569 Mo25: Mo25-like; Int 95.1 3.4 7.4E-05 39.6 20.2 105 363-467 169-285 (335)
201 COG5656 SXM1 Importin, protein 94.9 5.5 0.00012 41.4 37.9 145 274-418 402-563 (970)
202 KOG4500 Rho/Rac GTPase guanine 94.9 3.9 8.4E-05 39.6 30.2 408 59-466 54-520 (604)
203 PF12074 DUF3554: Domain of un 94.9 4 8.6E-05 39.6 19.1 57 174-231 34-90 (339)
204 PF12074 DUF3554: Domain of un 94.9 4.1 8.8E-05 39.6 19.0 48 398-446 205-254 (339)
205 KOG2549 Transcription initiati 94.8 1.6 3.5E-05 43.5 15.4 140 163-309 207-370 (576)
206 PF11701 UNC45-central: Myosin 94.7 0.19 4.1E-06 42.4 8.2 136 90-226 8-154 (157)
207 COG5656 SXM1 Importin, protein 94.7 6.3 0.00014 41.1 37.3 137 351-487 401-551 (970)
208 PF12054 DUF3535: Domain of un 94.7 5.3 0.00011 40.1 22.1 79 176-254 100-181 (441)
209 KOG2160 Armadillo/beta-catenin 94.7 3.9 8.5E-05 38.7 18.3 177 292-468 95-285 (342)
210 PF08713 DNA_alkylation: DNA a 94.7 2 4.4E-05 38.4 15.5 134 201-349 50-185 (213)
211 KOG4524 Uncharacterized conser 94.6 7.8 0.00017 41.6 23.2 92 396-487 802-901 (1014)
212 KOG2149 Uncharacterized conser 94.6 0.95 2.1E-05 43.3 13.0 125 363-487 63-194 (393)
213 cd00256 VATPase_H VATPase_H, r 94.3 6 0.00013 39.2 28.5 287 168-465 106-425 (429)
214 KOG2022 Nuclear transport rece 94.1 9.5 0.00021 40.6 34.5 173 140-316 439-626 (982)
215 KOG1848 Uncharacterized conser 93.9 13 0.00029 41.7 25.4 106 361-466 1000-1133(1610)
216 PF10521 DUF2454: Protein of u 93.9 2.3 5E-05 39.9 14.4 33 280-312 119-151 (282)
217 KOG2149 Uncharacterized conser 93.9 0.68 1.5E-05 44.2 10.6 111 10-121 59-176 (393)
218 PF08713 DNA_alkylation: DNA a 93.6 1.3 2.9E-05 39.5 12.0 133 125-271 51-185 (213)
219 cd00256 VATPase_H VATPase_H, r 93.4 8.9 0.00019 38.1 21.3 68 359-426 354-425 (429)
220 PF03224 V-ATPase_H_N: V-ATPas 93.4 3.5 7.6E-05 39.4 15.0 146 242-388 107-270 (312)
221 PF12054 DUF3535: Domain of un 93.4 9.6 0.00021 38.3 22.7 60 138-197 100-160 (441)
222 KOG4524 Uncharacterized conser 93.4 14 0.00029 40.0 23.2 93 317-409 801-901 (1014)
223 PF03378 CAS_CSE1: CAS/CSE pro 93.3 8.3 0.00018 38.6 17.6 192 240-433 70-279 (435)
224 KOG0889 Histone acetyltransfer 93.3 28 0.00062 43.4 29.6 261 202-465 984-1306(3550)
225 PF10521 DUF2454: Protein of u 93.2 2.8 6E-05 39.4 13.7 132 317-448 117-277 (282)
226 PF08389 Xpo1: Exportin 1-like 93.1 1.6 3.4E-05 36.3 10.8 48 177-226 100-148 (148)
227 KOG0946 ER-Golgi vesicle-tethe 93.0 13 0.00029 39.0 26.7 275 174-467 34-348 (970)
228 PF07571 DUF1546: Protein of u 92.8 0.74 1.6E-05 34.6 7.4 69 408-480 17-89 (92)
229 PF12231 Rif1_N: Rap1-interact 92.8 11 0.00023 37.2 26.6 268 176-464 59-351 (372)
230 KOG0891 DNA-dependent protein 92.8 30 0.00064 42.2 30.0 251 56-309 490-763 (2341)
231 KOG2549 Transcription initiati 92.7 4.9 0.00011 40.2 14.6 133 287-426 214-370 (576)
232 KOG0803 Predicted E3 ubiquitin 92.7 20 0.00044 40.8 21.0 265 208-490 47-335 (1312)
233 PF14664 RICTOR_N: Rapamycin-i 92.7 11 0.00023 37.0 23.6 171 176-348 81-269 (371)
234 cd08050 TAF6 TATA Binding Prot 92.5 1.3 2.8E-05 42.8 10.7 114 367-487 187-321 (343)
235 PF04118 Dopey_N: Dopey, N-ter 92.3 10 0.00022 35.9 22.5 178 281-464 55-253 (307)
236 cd03568 VHS_STAM VHS domain fa 92.3 2.3 4.9E-05 35.2 10.3 83 125-207 37-125 (144)
237 PF07571 DUF1546: Protein of u 91.9 0.71 1.5E-05 34.7 6.4 71 251-325 16-90 (92)
238 PF00514 Arm: Armadillo/beta-c 91.8 0.41 8.9E-06 29.6 4.2 29 163-191 12-40 (41)
239 KOG2973 Uncharacterized conser 91.6 11 0.00025 34.9 19.4 99 131-231 9-111 (353)
240 PF08167 RIX1: rRNA processing 91.6 7.8 0.00017 32.9 13.7 109 358-468 25-146 (165)
241 PF00514 Arm: Armadillo/beta-c 91.5 0.4 8.7E-06 29.6 4.0 28 437-464 13-40 (41)
242 KOG2021 Nuclear mRNA export fa 91.5 20 0.00044 37.6 37.9 266 215-486 206-540 (980)
243 PF03378 CAS_CSE1: CAS/CSE pro 91.5 17 0.00036 36.5 20.3 189 162-355 70-279 (435)
244 PF12830 Nipped-B_C: Sister ch 91.5 1.3 2.8E-05 38.6 8.5 71 396-468 7-77 (187)
245 PF01603 B56: Protein phosphat 91.3 17 0.00037 36.3 22.1 250 213-466 101-371 (409)
246 KOG2005 26S proteasome regulat 91.1 21 0.00045 36.9 21.7 283 126-427 453-744 (878)
247 PF14868 DUF4487: Domain of un 91.1 21 0.00045 36.9 22.8 90 378-468 461-555 (559)
248 PF12765 Cohesin_HEAT: HEAT re 91.0 0.5 1.1E-05 29.4 4.0 26 435-460 17-42 (42)
249 PF12231 Rif1_N: Rap1-interact 90.8 18 0.00038 35.6 28.3 108 360-470 177-308 (372)
250 PF08569 Mo25: Mo25-like; Int 90.7 16 0.00036 35.0 20.4 184 199-388 73-284 (335)
251 COG5537 IRR1 Cohesin [Cell div 90.7 21 0.00047 36.4 17.1 105 281-387 276-386 (740)
252 PF08064 UME: UME (NUC010) dom 90.6 4.8 0.0001 31.3 10.0 61 409-471 27-89 (107)
253 KOG4500 Rho/Rac GTPase guanine 90.6 18 0.00039 35.3 27.4 108 357-464 314-430 (604)
254 PF08161 NUC173: NUC173 domain 90.6 3.7 8.1E-05 36.0 10.4 45 160-205 38-82 (198)
255 PF01603 B56: Protein phosphat 90.4 20 0.00044 35.7 21.5 238 250-491 99-355 (409)
256 PF12765 Cohesin_HEAT: HEAT re 90.4 0.41 8.8E-06 29.8 3.1 25 357-381 17-41 (42)
257 PF08064 UME: UME (NUC010) dom 90.3 6.1 0.00013 30.7 10.4 62 370-434 27-91 (107)
258 PF08389 Xpo1: Exportin 1-like 90.1 9.7 0.00021 31.4 12.9 140 256-421 3-148 (148)
259 cd03569 VHS_Hrs_Vps27p VHS dom 90.1 5.1 0.00011 33.0 10.3 84 125-208 41-130 (142)
260 PF11698 V-ATPase_H_C: V-ATPas 90.0 1.4 3.1E-05 34.6 6.6 68 163-230 43-114 (119)
261 KOG2022 Nuclear transport rece 89.9 31 0.00068 37.0 31.2 160 199-362 459-633 (982)
262 KOG1848 Uncharacterized conser 89.7 6.5 0.00014 44.0 13.2 215 16-231 849-1132(1610)
263 KOG0889 Histone acetyltransfer 89.6 67 0.0014 40.5 30.1 151 86-236 984-1160(3550)
264 PF11698 V-ATPase_H_C: V-ATPas 89.5 0.97 2.1E-05 35.5 5.3 56 60-115 57-115 (119)
265 KOG2973 Uncharacterized conser 89.2 19 0.00041 33.5 17.5 37 447-483 255-293 (353)
266 PF08161 NUC173: NUC173 domain 88.6 14 0.00031 32.4 12.5 27 436-463 171-197 (198)
267 PF08767 CRM1_C: CRM1 C termin 88.4 24 0.00052 33.8 16.4 135 334-469 42-198 (319)
268 PF14868 DUF4487: Domain of un 88.1 35 0.00076 35.3 26.6 91 339-430 461-556 (559)
269 cd06561 AlkD_like A new struct 87.6 19 0.0004 31.6 15.0 64 205-271 108-171 (197)
270 PF03224 V-ATPase_H_N: V-ATPas 87.1 29 0.00062 33.2 17.3 68 164-231 106-179 (312)
271 cd03567 VHS_GGA VHS domain fam 87.1 8.9 0.00019 31.4 9.7 71 126-196 39-120 (139)
272 PF08167 RIX1: rRNA processing 87.1 18 0.00038 30.8 14.6 110 317-428 23-145 (165)
273 KOG2153 Protein involved in th 86.8 41 0.0009 34.7 23.4 289 162-451 209-560 (704)
274 COG5095 TAF6 Transcription ini 86.8 13 0.00027 34.3 11.1 53 431-483 272-336 (450)
275 KOG1048 Neural adherens juncti 86.5 47 0.001 35.1 23.7 97 329-425 529-640 (717)
276 cd03569 VHS_Hrs_Vps27p VHS dom 86.3 17 0.00038 29.9 11.9 75 396-470 40-119 (142)
277 cd03561 VHS VHS domain family; 86.1 17 0.00037 29.6 11.6 75 396-470 36-117 (133)
278 cd03568 VHS_STAM VHS domain fa 86.1 18 0.00039 29.9 12.7 95 329-429 14-113 (144)
279 PF11701 UNC45-central: Myosin 86.0 9.9 0.00021 32.0 9.8 128 331-462 17-156 (157)
280 COG5234 CIN1 Beta-tubulin fold 85.7 36 0.00079 35.5 14.8 54 217-270 359-416 (993)
281 cd03567 VHS_GGA VHS domain fam 85.2 19 0.00042 29.5 12.6 74 396-469 37-120 (139)
282 cd03561 VHS VHS domain family; 85.2 19 0.00041 29.3 11.2 74 124-197 36-117 (133)
283 smart00288 VHS Domain present 85.0 13 0.00029 30.2 9.9 74 124-197 36-116 (133)
284 KOG3678 SARM protein (with ste 84.1 46 0.001 32.9 17.4 134 99-232 195-337 (832)
285 PF08623 TIP120: TATA-binding 83.8 4.2 9.2E-05 34.4 6.5 75 174-249 38-114 (169)
286 PF00790 VHS: VHS domain; Int 83.7 23 0.0005 29.1 12.1 74 396-469 41-122 (140)
287 KOG2122 Beta-catenin-binding p 83.5 93 0.002 36.0 19.4 71 318-388 529-602 (2195)
288 smart00802 UME Domain in UVSB 83.5 19 0.00041 27.9 9.7 60 372-433 29-90 (107)
289 PF08767 CRM1_C: CRM1 C termin 83.5 43 0.00094 32.1 20.2 76 160-235 114-198 (319)
290 PF14222 MOR2-PAG1_N: Cell mor 83.4 61 0.0013 33.8 24.8 51 339-389 452-502 (552)
291 COG5101 CRM1 Importin beta-rel 82.9 62 0.0013 33.5 33.5 149 321-469 483-652 (1053)
292 COG5537 IRR1 Cohesin [Cell div 82.4 42 0.00091 34.4 13.5 141 165-309 277-422 (740)
293 smart00802 UME Domain in UVSB 82.0 22 0.00047 27.6 9.6 60 410-471 28-89 (107)
294 COG5095 TAF6 Transcription ini 81.8 16 0.00035 33.6 9.6 131 289-426 207-359 (450)
295 PF14225 MOR2-PAG1_C: Cell mor 81.6 44 0.00096 30.9 13.1 127 281-413 112-244 (262)
296 KOG2081 Nuclear transport regu 81.1 67 0.0015 32.7 33.9 129 294-428 366-497 (559)
297 PF04118 Dopey_N: Dopey, N-ter 80.9 52 0.0011 31.2 21.0 165 216-386 69-253 (307)
298 smart00567 EZ_HEAT E-Z type HE 80.9 1.8 4E-05 24.4 2.4 29 255-291 1-29 (30)
299 COG5110 RPN1 26S proteasome re 79.7 75 0.0016 32.3 20.0 218 160-388 447-706 (881)
300 cd00197 VHS_ENTH_ANTH VHS, ENT 79.6 25 0.00055 27.6 9.4 38 318-355 36-73 (115)
301 cd00197 VHS_ENTH_ANTH VHS, ENT 79.1 29 0.00063 27.3 11.0 68 396-463 36-113 (115)
302 cd07064 AlkD_like_1 A new stru 79.1 46 0.001 29.6 14.7 131 127-271 48-180 (208)
303 KOG2038 CAATT-binding transcri 79.0 94 0.002 33.1 20.4 70 160-231 301-370 (988)
304 PF08623 TIP120: TATA-binding 78.8 6.6 0.00014 33.3 6.0 60 57-117 37-96 (169)
305 PF12830 Nipped-B_C: Sister ch 78.8 44 0.00095 29.1 15.6 70 240-311 7-76 (187)
306 cd06561 AlkD_like A new struct 78.4 45 0.00098 29.1 16.8 64 283-349 108-171 (197)
307 PF04078 Rcd1: Cell differenti 78.2 55 0.0012 29.9 15.1 72 82-153 91-167 (262)
308 PF12397 U3snoRNP10: U3 small 77.9 30 0.00064 27.5 9.5 71 122-194 3-76 (121)
309 PF12397 U3snoRNP10: U3 small 77.8 33 0.00072 27.2 10.6 72 316-389 3-76 (121)
310 PF09324 DUF1981: Domain of un 77.7 24 0.00052 26.1 8.1 68 160-227 14-84 (86)
311 COG5110 RPN1 26S proteasome re 77.4 87 0.0019 31.8 19.9 83 381-467 625-707 (881)
312 PF00790 VHS: VHS domain; Int 76.8 40 0.00087 27.7 13.4 100 327-432 17-124 (140)
313 smart00185 ARM Armadillo/beta- 76.1 4.9 0.00011 24.3 3.5 28 164-191 13-40 (41)
314 smart00185 ARM Armadillo/beta- 75.3 5.4 0.00012 24.1 3.6 28 437-464 13-40 (41)
315 cd03572 ENTH_epsin_related ENT 74.5 42 0.00091 26.7 9.5 36 318-353 37-72 (122)
316 KOG2199 Signal transducing ada 72.8 41 0.0009 32.4 9.9 81 123-203 43-129 (462)
317 PF03130 HEAT_PBS: PBS lyase H 71.7 4.3 9.3E-05 22.3 2.2 14 374-387 1-14 (27)
318 PF11935 DUF3453: Domain of un 71.1 83 0.0018 28.7 15.0 64 288-351 1-75 (239)
319 cd07064 AlkD_like_1 A new stru 70.5 78 0.0017 28.1 16.7 132 203-349 47-180 (208)
320 KOG1048 Neural adherens juncti 69.8 1.6E+02 0.0035 31.4 22.8 330 9-347 233-640 (717)
321 PF09324 DUF1981: Domain of un 69.6 43 0.00093 24.7 7.9 65 357-421 16-83 (86)
322 COG5369 Uncharacterized conser 69.3 36 0.00078 34.3 9.1 106 126-231 432-545 (743)
323 cd03565 VHS_Tom1 VHS domain fa 69.2 63 0.0014 26.6 11.0 83 126-208 39-131 (141)
324 PF14668 RICTOR_V: Rapamycin-i 67.8 25 0.00054 25.0 5.8 52 376-427 5-59 (73)
325 KOG3678 SARM protein (with ste 67.4 1.4E+02 0.003 29.8 14.2 144 11-154 182-336 (832)
326 KOG2038 CAATT-binding transcri 66.4 1.9E+02 0.0041 31.0 26.3 223 240-469 303-567 (988)
327 cd03572 ENTH_epsin_related ENT 66.4 65 0.0014 25.7 10.4 37 159-195 34-70 (122)
328 KOG2759 Vacuolar H+-ATPase V1 65.7 1.4E+02 0.0031 29.3 27.8 69 397-465 366-438 (442)
329 smart00288 VHS Domain present 65.1 74 0.0016 25.8 12.3 71 359-429 38-114 (133)
330 PF12726 SEN1_N: SEN1 N termin 64.4 2.2E+02 0.0048 31.1 32.2 136 59-196 94-247 (727)
331 KOG1837 Uncharacterized conser 63.8 3E+02 0.0064 32.3 17.9 73 281-353 1542-1616(1621)
332 PF07539 DRIM: Down-regulated 63.8 45 0.00097 27.4 7.5 81 279-367 16-97 (141)
333 KOG2122 Beta-catenin-binding p 63.4 3E+02 0.0065 32.3 17.3 68 281-348 531-601 (2195)
334 KOG1932 TATA binding protein a 62.6 2.7E+02 0.0058 31.4 14.9 70 212-289 653-724 (1180)
335 COG5369 Uncharacterized conser 60.0 39 0.00085 34.1 7.4 109 357-465 430-545 (743)
336 PF14228 MOR2-PAG1_mid: Cell m 59.7 3.2E+02 0.0069 31.4 27.3 139 160-311 193-359 (1120)
337 PF14668 RICTOR_V: Rapamycin-i 59.3 21 0.00045 25.4 4.1 54 414-467 4-60 (73)
338 KOG1566 Conserved protein Mo25 55.1 1.9E+02 0.0041 27.3 17.0 186 278-468 77-289 (342)
339 PF07539 DRIM: Down-regulated 53.5 88 0.0019 25.7 7.6 49 357-410 16-64 (141)
340 cd03565 VHS_Tom1 VHS domain fa 51.5 1.4E+02 0.003 24.6 12.4 98 328-431 14-120 (141)
341 PF05997 Nop52: Nucleolar prot 51.1 1.8E+02 0.004 26.0 14.8 69 13-81 4-77 (217)
342 KOG1087 Cytosolic sorting prot 50.5 1.2E+02 0.0025 30.8 9.2 74 396-469 37-116 (470)
343 COG4912 Predicted DNA alkylati 50.0 96 0.0021 27.5 7.5 31 240-270 153-183 (222)
344 PF04388 Hamartin: Hamartin pr 49.5 3.7E+02 0.008 29.0 14.0 151 9-172 4-161 (668)
345 KOG1087 Cytosolic sorting prot 49.3 2.8E+02 0.006 28.2 11.5 72 359-430 39-116 (470)
346 PF14222 MOR2-PAG1_N: Cell mor 49.0 3.4E+02 0.0074 28.5 29.3 41 428-468 463-503 (552)
347 KOG3961 Uncharacterized conser 46.2 70 0.0015 28.1 6.0 73 396-468 113-187 (262)
348 KOG2374 Uncharacterized conser 44.8 2.6E+02 0.0056 28.1 10.1 109 359-471 8-131 (661)
349 PF12612 TFCD_C: Tubulin foldi 44.7 2E+02 0.0044 25.1 9.1 28 242-269 8-35 (193)
350 KOG2199 Signal transducing ada 43.3 3.3E+02 0.0071 26.7 11.6 98 328-431 21-123 (462)
351 PF12612 TFCD_C: Tubulin foldi 42.9 2.3E+02 0.005 24.7 10.3 65 422-486 73-138 (193)
352 PF14228 MOR2-PAG1_mid: Cell m 42.8 5.8E+02 0.013 29.4 29.6 68 242-309 504-572 (1120)
353 PHA02922 hypothetical protein; 42.5 1.8E+02 0.0038 23.5 7.1 114 58-176 21-140 (153)
354 KOG3961 Uncharacterized conser 42.4 1E+02 0.0022 27.2 6.4 87 201-289 113-201 (262)
355 KOG2759 Vacuolar H+-ATPase V1 42.4 3.5E+02 0.0077 26.8 24.6 68 358-425 366-437 (442)
356 KOG1222 Kinesin associated pro 41.3 3.9E+02 0.0085 27.0 28.7 110 105-214 282-398 (791)
357 PF04078 Rcd1: Cell differenti 41.1 2.9E+02 0.0063 25.4 14.6 68 123-190 93-166 (262)
358 PF08620 RPAP1_C: RPAP1-like, 38.5 63 0.0014 23.0 3.9 34 7-40 37-70 (73)
359 KOG1932 TATA binding protein a 38.4 6.4E+02 0.014 28.6 16.8 88 333-424 882-978 (1180)
360 KOG2229 Protein required for a 37.6 4.6E+02 0.01 26.8 27.1 94 161-256 18-115 (616)
361 KOG0929 Guanine nucleotide exc 37.5 7.7E+02 0.017 29.3 15.5 225 47-276 1036-1304(1514)
362 PF06371 Drf_GBD: Diaphanous G 37.4 1.8E+02 0.0039 25.0 7.7 55 410-464 129-186 (187)
363 COG4912 Predicted DNA alkylati 36.5 3.1E+02 0.0067 24.5 8.5 71 396-470 117-188 (222)
364 PF06371 Drf_GBD: Diaphanous G 36.1 2.8E+02 0.0061 23.8 9.5 56 370-425 128-186 (187)
365 KOG2229 Protein required for a 35.8 4.9E+02 0.011 26.6 29.0 290 126-425 21-343 (616)
366 PF11935 DUF3453: Domain of un 35.7 3.4E+02 0.0074 24.7 17.6 46 203-250 115-162 (239)
367 PHA02861 uncharacterized prote 35.5 2.4E+02 0.0053 22.9 9.0 116 57-178 13-135 (149)
368 PF14225 MOR2-PAG1_C: Cell mor 35.2 3.7E+02 0.008 24.9 19.1 66 398-466 189-255 (262)
369 KOG3036 Protein involved in ce 34.8 3.6E+02 0.0078 24.6 12.9 27 166-192 221-247 (293)
370 KOG4199 Uncharacterized conser 34.1 4.3E+02 0.0094 25.4 28.3 144 282-425 285-443 (461)
371 KOG4190 Uncharacterized conser 33.9 1.8E+02 0.004 29.5 7.5 39 455-493 415-453 (1034)
372 COG5330 Uncharacterized protei 31.7 2.5E+02 0.0055 27.2 7.8 28 357-384 46-73 (364)
373 PF14663 RasGEF_N_2: Rapamycin 31.4 1E+02 0.0022 24.3 4.6 34 355-388 5-38 (115)
374 PF04869 Uso1_p115_head: Uso1 30.7 4.9E+02 0.011 24.9 10.4 185 293-483 51-251 (312)
375 KOG0890 Protein kinase of the 30.5 1.2E+03 0.026 29.3 16.1 197 142-347 897-1112(2382)
376 KOG3036 Protein involved in ce 30.5 4.3E+02 0.0092 24.2 13.8 25 10-36 27-51 (293)
377 PF14663 RasGEF_N_2: Rapamycin 30.0 1.6E+02 0.0035 23.1 5.5 30 436-465 8-37 (115)
378 PF04388 Hamartin: Hamartin pr 29.4 7.5E+02 0.016 26.7 13.9 92 396-491 69-165 (668)
379 KOG2842 Interferon-related pro 28.2 5.8E+02 0.013 25.0 16.1 201 14-214 65-301 (427)
380 KOG1410 Nuclear transport rece 26.3 8.2E+02 0.018 26.2 15.8 256 6-268 2-332 (1082)
381 PF04821 TIMELESS: Timeless pr 26.2 3.4E+02 0.0073 25.2 7.7 63 4-74 8-70 (266)
382 COG5231 VMA13 Vacuolar H+-ATPa 26.0 2E+02 0.0044 27.2 5.9 69 125-193 356-429 (432)
383 COG5330 Uncharacterized protei 24.8 4.5E+02 0.0097 25.6 8.2 64 360-423 9-73 (364)
384 PF12333 Ipi1_N: Rix1 complex 24.4 3E+02 0.0065 21.0 6.0 52 434-485 9-63 (102)
385 KOG3534 p53 inducible protein 24.4 7.6E+02 0.017 26.3 10.1 70 161-230 925-996 (1253)
386 COG5209 RCD1 Uncharacterized p 24.4 3.4E+02 0.0073 24.3 6.7 65 48-112 145-215 (315)
387 PF11841 DUF3361: Domain of un 24.3 4.4E+02 0.0095 22.3 12.8 111 360-470 13-136 (160)
388 KOG4646 Uncharacterized conser 24.3 4E+02 0.0087 21.8 8.4 100 365-464 24-127 (173)
389 PF14838 INTS5_C: Integrator c 23.8 9.4E+02 0.02 26.0 21.2 19 330-348 227-245 (696)
390 PF08146 BP28CT: BP28CT (NUC21 23.5 4.4E+02 0.0095 22.0 7.8 31 101-131 36-66 (153)
391 KOG1222 Kinesin associated pro 23.4 8E+02 0.017 25.0 23.9 23 363-385 639-661 (791)
392 PF12333 Ipi1_N: Rix1 complex 23.0 2.1E+02 0.0046 21.9 4.9 52 84-135 9-63 (102)
393 PF06685 DUF1186: Protein of u 20.9 6.6E+02 0.014 23.1 16.8 187 202-409 2-197 (249)
394 KOG1837 Uncharacterized conser 20.8 1.5E+03 0.032 27.1 20.8 65 406-470 1550-1616(1621)
395 PF13925 Katanin_con80: con80 20.2 4.8E+02 0.01 22.0 7.0 74 357-431 28-103 (164)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-40 Score=333.91 Aligned_cols=532 Identities=52% Similarity=0.763 Sum_probs=475.7
Q ss_pred CCcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcchhh
Q 008806 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85 (553)
Q Consensus 6 ~~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 85 (553)
+.+|+|..++..+.++|-..|..+.+-+..++-.+|++.++.+++|++.+..+++.+|+..++..++.+....+.+.+..
T Consensus 79 ~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~ 158 (759)
T KOG0211|consen 79 DSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAH 158 (759)
T ss_pred cccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHH
Confidence 37999999999999999999999999999999999999899999999999559999999999999999999999999999
Q ss_pred cchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-HHHHH
Q 008806 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTEL 164 (553)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l 164 (553)
.+.+.++++..+++..||+.+++.+..++..++++....++.|++.++..++....|..++.+++..+....++ .+.++
T Consensus 159 ~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el 238 (759)
T KOG0211|consen 159 MLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL 238 (759)
T ss_pred HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence 99999999999999999999999999999999988888889999999999988889999999999999999855 88999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc-hhhhchH
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-DCVAHIL 243 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~ll 243 (553)
.+.+.++++|.++.||.++++.+|.+++.++.+.....+.|.+..+..|+.+.||.+|++.+..+...+... ...+.+.
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~ 318 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLT 318 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhh
Confidence 999999999999999999999999999999998888999999999999999999999999999999998887 7777899
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC----HHHHHHh
Q 008806 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQH 319 (553)
Q Consensus 244 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~~ 319 (553)
+.+.+..+|.+|++|.+++..+..+...+|.+.+...+.+.+..+++|+.+++|.+++.....+....+ .+...+.
T Consensus 319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ 398 (759)
T KOG0211|consen 319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS 398 (759)
T ss_pred HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence 999999999999999999999999999999988878899999999999999999999999999988877 4455677
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHH---HHHHhhhhhchhhHHh
Q 008806 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIIS---KLDQVNQVIGIDLLSQ 396 (553)
Q Consensus 320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~---~l~~~~~~~~~~~~~~ 396 (553)
++|.+..+..|.+.+||.+.+..+..+.+.+|.+.....+.|.+...++|..+.||..... .+.......|.+...+
T Consensus 399 ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 399 ILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN 478 (759)
T ss_pred hhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence 8899999999999999999999999999999988888899999999999999999999994 4444455667788889
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhh
Q 008806 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 476 (553)
Q Consensus 397 ~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i 476 (553)
..+|.+..+..|.+|++|.+.++.+..++...|.+++.+.+.+.+...+.|.+.++|.+++..+..++..+|.+|....+
T Consensus 479 slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~ 558 (759)
T KOG0211|consen 479 SLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEE 558 (759)
T ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcccccchhhhhhhh--hHHHHHH-HhhhhhhhhhhhhhcccchhhhhHHHHHHH
Q 008806 477 TPQKSHVLDCCQWSLMHQKTEYLTS--SLMWQKC-YSLSFPLLTSLWWRKQSVPVWLSSLRIQML 538 (553)
Q Consensus 477 ~p~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~p~~~~~~~~~~~~pv~~~~~~~~~~ 538 (553)
+|.+..+..+++|..++.....+.. .+++... -..+.|.+.. +..+.+.+||.-++|.+=.
T Consensus 559 i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~-l~~D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 559 IPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLD-LVKDPVANVRINVAKHLPK 622 (759)
T ss_pred hHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHH-hccCCchhhhhhHHHHHHH
Confidence 9999988876655544322211111 1111111 2346665544 5688999999999987644
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-33 Score=279.16 Aligned_cols=472 Identities=19% Similarity=0.244 Sum_probs=417.9
Q ss_pred HhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhh
Q 008806 17 ELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC 95 (553)
Q Consensus 17 ~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 95 (553)
...++++.+|.+++..+..++..+..+....++.|.+.. ..++--.-|-.++..++.......++.....+.+...++.
T Consensus 167 l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc 246 (759)
T KOG0211|consen 167 LATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLC 246 (759)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhc
Confidence 345778889999999999999888877777899999988 3333333455566666666655555566778999999999
Q ss_pred ccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCCh--HHHHHHHHHHHHhcC
Q 008806 96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLCQ 173 (553)
Q Consensus 96 ~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~l~~~l~~ll~ 173 (553)
+|.++.||..+..-++.++..++.+.....++|.+.++..|+...+|.+|...+..+...+.. +..+.+.+.+.+..+
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~ 326 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVE 326 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhc
Confidence 999999999999999999999998888889999999999999999999999999888877654 477888999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC----cchhhhchHHHHHHh
Q 008806 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE----PQDCVAHILPVIVNF 249 (553)
Q Consensus 174 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~ll~~l~~l 249 (553)
|++|.+|...+..+..+...++++.......|.+...++|+.+++|.+...-...++...+ .+...+.++|.+..+
T Consensus 327 d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l 406 (759)
T KOG0211|consen 327 DGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL 406 (759)
T ss_pred ChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH
Confidence 9999999999999999999999877777888999999999999999999999998888877 344556788999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHH---HHHHhhCHHHHHHhHHHHHHH
Q 008806 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT---KFCRILNPELAIQHILPCVKE 326 (553)
Q Consensus 250 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~---~~~~~~~~~~~~~~l~~~l~~ 326 (553)
+.|.+..||.+.+.....+...+|.+.+...++|.+..+++|..+.||......+. ......|.....+..+|.+..
T Consensus 407 v~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~e 486 (759)
T KOG0211|consen 407 VLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVE 486 (759)
T ss_pred HhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhh
Confidence 99999999999999988888888888888899999999999999999999985443 333345667778999999999
Q ss_pred hccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhh
Q 008806 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (553)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~ 406 (553)
+..|.+|++|.++.+.++.++...|..++.+.+.+++...+.|....+|++|+.++..++..+|.+|....++|.+....
T Consensus 487 l~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~ 566 (759)
T KOG0211|consen 487 LAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMD 566 (759)
T ss_pred hccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHh
Confidence 99999999999999999999999999988889999999999999999999999999999999999998899999999998
Q ss_pred cCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhhh
Q 008806 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLDC 486 (553)
Q Consensus 407 ~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~~ 486 (553)
.+++|..|.+.+.++..++..+|.+.+.++++|.+..+..|++++||..+++.+..+.+.+......+.|.|.+..+.+|
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d 646 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSD 646 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccC
Confidence 88899999999999999999999999999999999999999999999999999999999998877778899998888776
Q ss_pred hc
Q 008806 487 CQ 488 (553)
Q Consensus 487 ~~ 488 (553)
.+
T Consensus 647 ~~ 648 (759)
T KOG0211|consen 647 QE 648 (759)
T ss_pred cc
Confidence 53
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.2e-28 Score=246.64 Aligned_cols=472 Identities=17% Similarity=0.215 Sum_probs=369.4
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh--cCCCcHHHHHHHHHHhhccccc----cCCcc
Q 008806 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPY----VGGVE 82 (553)
Q Consensus 9 ~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~--~~d~~~~vr~~~~~~l~~l~~~----~~~~~ 82 (553)
.++..|+..|.++|+.+|..|.+.+..+...- . +++.+.. -...++++|..++..+.+++.. +..+.
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~---~----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE---P----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc---c----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 46889999999999999999999999875421 1 7777766 3557899999999988877653 12122
Q ss_pred hhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH---
Q 008806 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--- 159 (553)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--- 159 (553)
.....-.+|.....++.+.||...+..+.++++..-++ -|+.+++++.+.++++++..|+++..++..+...++..
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 22223345566677889999999999999999988776 78999999999999999999999999999998888776
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch-h---hhhhHHHHH----HHhhhCCChhHHHHHHHHHHHhhc
Q 008806 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-H---LKTDIMSIF----EDLTQDDQDSVRLLAVEGCAALGK 231 (553)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~-~---~~~~l~p~l----~~~~~d~~~~vr~~a~~~l~~l~~ 231 (553)
+..++.+.|.+.+.|++..||.+++++++.++...+.+ . ....++|.+ .+.+.+.+...-..+++++..++.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 77899999999999999889999999999999998621 1 223455543 344566777777788888888887
Q ss_pred cCCc--chhhhchHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCC-----CccccchHHHHHHhcCCCc---------
Q 008806 232 LLEP--QDCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGP-----EPTRMDLVPAYVRLLRDNE--------- 293 (553)
Q Consensus 232 ~~~~--~~~~~~ll~~l~~l~~d--~~~~vR~~~~~~l~~l~~~~~~-----~~~~~~llp~l~~ll~d~~--------- 293 (553)
..++ ......++.+..+...+ -+..+|..+.+.+-.+++.-+. ..+.+.+++.++..+.|.+
T Consensus 236 ~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 236 SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 6554 12233445555555544 4678999999988887776211 1134567788877663211
Q ss_pred -------HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh--HHHhHHHHHH
Q 008806 294 -------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFL 364 (553)
Q Consensus 294 -------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~p~l~ 364 (553)
..-...|.+++..++..+|++.+...+.+.+..++++++|+-|.+++.+++.+++..++.- ..+.++|.+.
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL 395 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 1245678999999999999998889999999999999999999999999999999776543 2678999999
Q ss_pred HhhCCCChHHHHHHHHHHHHhhhhhchhh---HHhhHHHHHHHhhcCC-CcHHHHHHHHHHHHHHhhhChhhhHH---HH
Q 008806 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDD---KL 437 (553)
Q Consensus 365 ~~l~d~~~~VR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~~~~~~---~l 437 (553)
+.++|+++.||.+|+.++|.+...+.++. ..+.+.|.|.....+. +.++...++.++-.+...+..+.+.+ .+
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~l 475 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGL 475 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999999999999999988764 3366777888777775 67999999999998888887765444 44
Q ss_pred HH-HHHHHccCCchHHHHHHHHHHHHHHHHhChhHHh--hhhhhhhhhhhhhhc
Q 008806 438 GA-LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQKSHVLDCCQ 488 (553)
Q Consensus 438 ~~-~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~--~~i~p~l~~~l~~~~ 488 (553)
+. .+..+.+.+.+.||+.++.+++.++...+..+.. +.++|.|.++++..+
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence 44 4444667788899999999999999999887764 789999999988644
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-26 Score=233.91 Aligned_cols=472 Identities=17% Similarity=0.197 Sum_probs=367.6
Q ss_pred HHHHHhcCc-cHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCC--cchhhcch
Q 008806 13 VLIDELKND-DIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHVLL 88 (553)
Q Consensus 13 ~ll~~L~~~-d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~ 88 (553)
.+++.+.++ .+.+|.+-++.++.+++...++ .|++|++++.+ .++.++..|..+...|..+...++. .++...+.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 455666654 4579999999999999999888 89999999999 8889999999999999998887776 34677899
Q ss_pred hHHHhhhccchhHHHHHHHHHHHHHHhhcC--hhhhh--hhHHHHHH----HHhcCCCcchhhhHhhhhHhhcCCCChH-
Q 008806 89 PPLETLCTVEETCVRDKAVESLCRIGSQMR--ESDLV--DWYIPLVK----RLAAGEWFTARVSACGLFHIAYPSAPDI- 159 (553)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~--~~~~~--~~~l~~l~----~~~~~~~~~~r~~~~~~l~~l~~~~~~~- 159 (553)
+++.+.++|++..||..+..+++.++..++ +.... ..++|-+. ....+.+...-..+.+.+..++...++-
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 999998888877799999999999999886 22222 22556443 3445555555566777777777665554
Q ss_pred --HHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhhCc-----hhhhhhHHHHHHHhhhCC----------------
Q 008806 160 --LKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQDD---------------- 214 (553)
Q Consensus 160 --~~~~l~~~l~~ll~d~--~~~Vr~~a~~~l~~l~~~~~~-----~~~~~~l~p~l~~~~~d~---------------- 214 (553)
+..+++....+...++ +..+|..++..+..++++.+. ......++|.+.....|.
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 5566777777776655 678999999999999887432 224456677666554321
Q ss_pred ChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCC
Q 008806 215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDN 292 (553)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~llp~l~~ll~d~ 292 (553)
...-...|.+++..++..+|.+...+.+++.+..++...+|+-|.++..+|+.++++.++.. ..+.++|..+..++|+
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP 401 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence 12346778899999999999988888999999999999999999999999999998766432 2357899999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhCHH---HHHHhHHHHHHHhccCC-cHHHHHHHHHHHHhhhhhhCHHhHHH---hHHH-HHH
Q 008806 293 EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDATIE---QLLP-IFL 364 (553)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~p-~l~ 364 (553)
++.||.+|+.+++++.+.+.++ ...+.+.|.+...+.+. +.+|...++.++-.+.+...++...+ .++. .+.
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998776 34566777887777664 57999999999998888777765543 3333 444
Q ss_pred HhhCCCChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCC----CcHHHHHHHHHHHHHHhhhChhhhHHH--
Q 008806 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDK-- 436 (553)
Q Consensus 365 ~~l~d~~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~----~~~vR~~~~~~l~~i~~~~~~~~~~~~-- 436 (553)
.+++.+.+.|++.++.+++.+....+... +.+.++|.|...+... ....|...+++++.++..+|++.|.+.
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~ 561 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE 561 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence 45577889999999999999999887765 3488999998887543 466888999999999999999877654
Q ss_pred -HHHHHHHH---ccCCchHHHHHHHHHHHHHHHHhChhHHh--hhhhhhhhhhhh
Q 008806 437 -LGALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQKSHVLD 485 (553)
Q Consensus 437 -l~~~l~~~---l~D~~~~VR~~a~~~l~~l~~~~~~~~~~--~~i~p~l~~~l~ 485 (553)
++..+..+ -.|.+...|...+..++++++.+|+++.. +.++|.+....+
T Consensus 562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~ 616 (1075)
T KOG2171|consen 562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTAR 616 (1075)
T ss_pred HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhc
Confidence 44444444 44567789999999999999999998864 677777776543
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-24 Score=208.09 Aligned_cols=224 Identities=18% Similarity=0.146 Sum_probs=154.3
Q ss_pred CcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHh----------------hC------------------hHHHhhhhhhh
Q 008806 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARA----------------LG------------------EERTRKELIPF 52 (553)
Q Consensus 7 ~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~----------------~~------------------~~~~~~~ll~~ 52 (553)
-+.++.++++.-.|+|+.+|..+...+.+.-.. .+ ......+.+.+
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~y 90 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDY 90 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHH
Confidence 345577777777788888888887766543110 00 00001123333
Q ss_pred hhh-----cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChh-------
Q 008806 53 LSE-----NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES------- 120 (553)
Q Consensus 53 l~~-----~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~------- 120 (553)
++. +.|.++.+|......+..++..- +-..|..++|.+.+++..++....+.|+.+|.++++...+.
T Consensus 91 iKs~~l~~lgd~~~lIr~tvGivITTI~s~~-~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~ 169 (885)
T KOG2023|consen 91 IKSECLHGLGDASPLIRATVGIVITTIASTG-GLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT 169 (885)
T ss_pred HHHHHHhhccCchHHHHhhhhheeeeeeccc-ccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc
Confidence 333 45677788888877777776643 33577899999999998888889999999999999864321
Q ss_pred hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch
Q 008806 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA 197 (553)
Q Consensus 121 ~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~ 197 (553)
.-...++|-+.++.+++++.+|..|..++..+...-+.. ..+.++..+..+..|.+++||+..+.++.-+.+..++.
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence 113458899999999999999999999999888776665 66889999999999999999999999999888765431
Q ss_pred h--hhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhc
Q 008806 198 H--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (553)
Q Consensus 198 ~--~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (553)
. ....++.++.....|.+++|...|++.+.++++
T Consensus 250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 1 112333333444444444454444444444444
No 6
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.91 E-value=2.1e-20 Score=180.94 Aligned_cols=503 Identities=18% Similarity=0.239 Sum_probs=342.1
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh--cCCCcHHHHHHHHHHhhccccccCC--cchhhc
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHV 86 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~--~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~ 86 (553)
|-.++.+.++..+..|..+++.|..=+...|+....+.++|.++. +.|.. |..+...+..+...+++ ..|.+.
T Consensus 365 i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqe---rhllVkvidriLyklDdlvrpYVhk 441 (1172)
T KOG0213|consen 365 IMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQE---RHLLVKVIDRILYKLDDLVRPYVHK 441 (1172)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchh---hhhHHHHHHHHHHhhcccchhceee
Confidence 667788899999999999999999999999998888999999998 44432 33333333333222211 112222
Q ss_pred chhHHHhhhcc-----------------------------------chhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHH
Q 008806 87 LLPPLETLCTV-----------------------------------EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131 (553)
Q Consensus 87 l~~~l~~l~~~-----------------------------------~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~ 131 (553)
++-.+..++-| .++.||.....+++.+++.++ .+.++|++.
T Consensus 442 ILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalg----ip~llpfLk 517 (1172)
T KOG0213|consen 442 ILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALG----IPALLPFLK 517 (1172)
T ss_pred eEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC----cHHHHHHHH
Confidence 22222222222 455666666666666666554 356899999
Q ss_pred HHhcCC-CcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhh------h-
Q 008806 132 RLAAGE-WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL------K- 200 (553)
Q Consensus 132 ~~~~~~-~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~------~- 200 (553)
..+++. +|+.|..++.+..+++...|-. +...++.++.+++.|.+..||..++.+++.+++..++-.+ .
T Consensus 518 avc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlk 597 (1172)
T KOG0213|consen 518 AVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLK 597 (1172)
T ss_pred HHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 999986 9999999999999888766655 6778899999999999999999999999999988765110 0
Q ss_pred -------------------------------------hhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc--hhhhc
Q 008806 201 -------------------------------------TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAH 241 (553)
Q Consensus 201 -------------------------------------~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 241 (553)
.+++-++.+-...++++.+...++.+...+..-|.+ -....
T Consensus 598 pLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~d 677 (1172)
T KOG0213|consen 598 PLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFD 677 (1172)
T ss_pred HHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhh
Confidence 011222223345677778877777777776654332 11122
Q ss_pred hHHH---------------------------------------HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc---
Q 008806 242 ILPV---------------------------------------IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM--- 279 (553)
Q Consensus 242 ll~~---------------------------------------l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~--- 279 (553)
++|. +..-+.|.++.-|.+.+.+...+...+|.....+
T Consensus 678 ilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderle 757 (1172)
T KOG0213|consen 678 ILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLE 757 (1172)
T ss_pred hhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 2222 1222346677788888888888888777654433
Q ss_pred -chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhh---CHH
Q 008806 280 -DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---GKD 353 (553)
Q Consensus 280 -~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~---~~~ 353 (553)
.++..++..+.+...+.. ..+..++.++..++. +.+.+.++..+...+++++..||..++..++.++..+ +.+
T Consensus 758 E~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee 836 (1172)
T KOG0213|consen 758 ERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE 836 (1172)
T ss_pred HHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH
Confidence 344444444444332222 345666777777665 4556777888888899999999999999999988765 444
Q ss_pred hHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHH---hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh--
Q 008806 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-- 428 (553)
Q Consensus 354 ~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~---~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~-- 428 (553)
....++--++.+.+....++|--..+.++..++...|-.... ..++|.|.-.+++.+..+..+++..++.|+..-
T Consensus 837 ~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 837 KLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred HHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 445666677888889999999999999999999998866532 678888888899999999999999999998643
Q ss_pred --ChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhh-------------------------------h
Q 008806 429 --GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ-------------------------------H 475 (553)
Q Consensus 429 --~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~-------------------------------~ 475 (553)
+...+.. +-=-++.+|..-..++|.+|..++|.|++.+|++.... .
T Consensus 917 ~v~aREWMR-IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFt 995 (1172)
T KOG0213|consen 917 YVSAREWMR-ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFT 995 (1172)
T ss_pred cCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchh
Confidence 3333332 22234455666777899999999999999999864322 2
Q ss_pred hhhhhhhhhhhhcccccchh-------hhhhhhhHHHHHHHhhhhhhhhhhhhhcc
Q 008806 476 ITPQKSHVLDCCQWSLMHQK-------TEYLTSSLMWQKCYSLSFPLLTSLWWRKQ 524 (553)
Q Consensus 476 i~p~l~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 524 (553)
++|.|+.-...++...+.+- ++|. +.++.+..+...|++...+.+..
T Consensus 996 VLPalmneYrtPe~nVQnGVLkalsf~Feyi--gemskdYiyav~PlleDAlmDrD 1049 (1172)
T KOG0213|consen 996 VLPALMNEYRTPEANVQNGVLKALSFMFEYI--GEMSKDYIYAVTPLLEDALMDRD 1049 (1172)
T ss_pred hhHHHHhhccCchhHHHHhHHHHHHHHHHHH--HHHhhhHHHHhhHHHHHhhcccc
Confidence 45555444444433332221 1222 44667777788898888876644
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.8e-20 Score=182.49 Aligned_cols=473 Identities=17% Similarity=0.155 Sum_probs=342.4
Q ss_pred HHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcH-HHHHHHHHHhhccccccCCcc---hhhcch
Q 008806 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-EVLLAMAEELGVFIPYVGGVE---HAHVLL 88 (553)
Q Consensus 14 ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~-~vr~~~~~~l~~l~~~~~~~~---~~~~l~ 88 (553)
++..|.+..+..+..|...++.||..--|...|++|++.+.. ..+..+ .+++...+++|.+++.+.++. ..+.++
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL 174 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL 174 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence 346677899999999999999999888899999999999888 555444 599999999999999877642 223333
Q ss_pred -hHHHhhhc-cchhHHHHHHHHHHHHHHhh----cChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcC----CCCh
Q 008806 89 -PPLETLCT-VEETCVRDKAVESLCRIGSQ----MRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP----SAPD 158 (553)
Q Consensus 89 -~~l~~l~~-~~~~~vR~~a~~~l~~l~~~----~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~----~~~~ 158 (553)
.++.-+.. .++..||-+|..+|..-.+. +..+.-..++++......+.++.++|.++..++..+.. +...
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~ 254 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP 254 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 56788999999988776553 44455567789999999999999999999888776643 3333
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-C------c------h--------hhhhhHHHHHHHhhh-----
Q 008806 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV-E------P------A--------HLKTDIMSIFEDLTQ----- 212 (553)
Q Consensus 159 ~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~-~------~------~--------~~~~~l~p~l~~~~~----- 212 (553)
...+.++.....-..+++.+|...+.+-...+++-- + + + ...+.++|.+.+++.
T Consensus 255 yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~ 334 (859)
T KOG1241|consen 255 YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDED 334 (859)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC
Confidence 355557788888788999999998888777666421 1 0 0 112468888877663
Q ss_pred --CCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHH
Q 008806 213 --DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVR 287 (553)
Q Consensus 213 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~llp~l~~ 287 (553)
|++|+.-.+|--+|.-+++.++.+ ..++.+|++.+.++.++|+-|.+++.++|.+...-.... .....+|.++.
T Consensus 335 ~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~ 413 (859)
T KOG1241|consen 335 DDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN 413 (859)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH
Confidence 346888888888888888877764 557899999999999999999999999999987533222 22467899999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhC----HHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH--------hH
Q 008806 288 LLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--------AT 355 (553)
Q Consensus 288 ll~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--------~~ 355 (553)
++.|+.--||..+.+++++++..+. ++.....+++.+...++| .++|-..+++++..+++..-.. ..
T Consensus 414 lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 414 LMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred HhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 9999998999999999999998764 233344455555555554 4677777788877777543211 11
Q ss_pred HHhHHHHHHHhhC-----C-CChHHHHHHHHHHHHhhhhhc---------------------------------------
Q 008806 356 IEQLLPIFLSLLK-----D-EFPDVRLNIISKLDQVNQVIG--------------------------------------- 390 (553)
Q Consensus 356 ~~~l~p~l~~~l~-----d-~~~~VR~~a~~~l~~~~~~~~--------------------------------------- 390 (553)
.+.+.+++..+++ | ...+.|.+|..+|..+++...
T Consensus 493 t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQ 572 (859)
T KOG1241|consen 493 TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQ 572 (859)
T ss_pred chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 1233333334442 2 235678888888887775431
Q ss_pred ---------------hh--hHHhhHHHHHHHhhcC-CCcHHHHHHHHHHHHHHhhhChhh--hHHHHHHHHHHHc-cCCc
Q 008806 391 ---------------ID--LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKV 449 (553)
Q Consensus 391 ---------------~~--~~~~~ll~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l-~D~~ 449 (553)
++ ...+.++..+.+.++. .+-.+...+..+++.++..+|..+ +.+.+.|++...+ +-.+
T Consensus 573 s~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e 652 (859)
T KOG1241|consen 573 SLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE 652 (859)
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH
Confidence 11 1124455555566565 345577888889999999988875 6788999999888 6688
Q ss_pred hHHHHHHHHHHHHHHHHhChhHHh--hhhhhhhhhhhhhhc
Q 008806 450 YSIRDAAANNLKRLAEEFGPEWAM--QHITPQKSHVLDCCQ 488 (553)
Q Consensus 450 ~~VR~~a~~~l~~l~~~~~~~~~~--~~i~p~l~~~l~~~~ 488 (553)
..|..+|+..+|.++..++.++.. +.++..|.+.++.++
T Consensus 653 ~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~ 693 (859)
T KOG1241|consen 653 YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPN 693 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcc
Confidence 899999999999999999977653 678888888877654
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.9e-21 Score=183.35 Aligned_cols=438 Identities=16% Similarity=0.097 Sum_probs=327.8
Q ss_pred HHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhc---Ch
Q 008806 43 ERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQM---RE 119 (553)
Q Consensus 43 ~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~---~~ 119 (553)
++...++.+++++..++++++|+.+...+.++-. .+++-++++-++..+. .++..+|..|.-.|.+=+... .+
T Consensus 9 e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~---~pdfnnYL~~IL~~~~-~~d~~~Rs~aGLlLKNnvr~~~~~~~ 84 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL---FPDFNNYLIYILIRAK-SEDVPTRSLAGLLLKNNVRGHYNSIP 84 (885)
T ss_pred HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc---ccchhceeeEEEeccc-ccchhHHHHhhhhHhccccccccCCC
Confidence 3445678888888999999999999988887644 2345555665555554 344556887776665533211 12
Q ss_pred hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---
Q 008806 120 SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--- 196 (553)
Q Consensus 120 ~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~--- 196 (553)
.+...++-.-+.+.+.|.++-+|...--++..++...+-..+.+++|.+.+++..++....+.+..+|..+++....
T Consensus 85 ~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld 164 (885)
T KOG2023|consen 85 SEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD 164 (885)
T ss_pred hHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh
Confidence 24445566666677888888999888888888888877778899999999999999999999999999999875432
Q ss_pred ----hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 008806 197 ----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (553)
Q Consensus 197 ----~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~ 270 (553)
..-.+.++|.+.++.+++++.+|..|+.++..+.-.-+.. ...+.++..+..+.+|.++.||+.+|.++..+.+
T Consensus 165 s~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 165 SDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred hhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 1234678999999999999999999999998876543332 2345577778888999999999999999999988
Q ss_pred HhCCCccc--cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC-HH---HHHHhHHHHHHHh----------cc-----
Q 008806 271 AVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PE---LAIQHILPCVKEL----------SS----- 329 (553)
Q Consensus 271 ~~~~~~~~--~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~-~~---~~~~~l~~~l~~l----------~~----- 329 (553)
...+.... ..++.+.++..+|.+.+|-..|++....+++.-- .+ .+...++|.+... +.
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD 324 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED 324 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence 76654432 3577888888899999999999888887776421 11 2234555554321 11
Q ss_pred -------------------------------C----------CcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC
Q 008806 330 -------------------------------D----------SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK 368 (553)
Q Consensus 330 -------------------------------d----------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~ 368 (553)
| .+|..|...+.++.-++..+|.+. .+.++|++.+.|.
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLS 403 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcC
Confidence 0 138999999999999999999884 7788999999998
Q ss_pred CCChHHHHHHHHHHHHhhhhhch--hhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHH---HHHHHH
Q 008806 369 DEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQ 443 (553)
Q Consensus 369 d~~~~VR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l---~~~l~~ 443 (553)
.+.+.||++++-++|.+++..-. -.....++|.+..++.|+...||...+..+++.++.+-.+.-.+++ +..+++
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLR 483 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence 88999999999999999875321 1223679999999999999999999999999999886544333334 444445
Q ss_pred HccCCchHHHHHHHHHHHHHHHHhChhHHh--hhhhhhhhhhhh
Q 008806 444 WLQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQKSHVLD 485 (553)
Q Consensus 444 ~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~--~~i~p~l~~~l~ 485 (553)
.+-|.+..|+++|+.++..+-+..|++-.. +.|+..|...++
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~ 527 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG 527 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 566999999999999999999888755332 445555554444
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.89 E-value=6.2e-20 Score=182.14 Aligned_cols=471 Identities=15% Similarity=0.204 Sum_probs=321.6
Q ss_pred HHHHHhcCccHHHHHHHhhhHHH----HHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcchhhcch
Q 008806 13 VLIDELKNDDIQLRLNSIRRLST----IARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (553)
Q Consensus 13 ~ll~~L~~~d~~~R~~a~~~l~~----i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 88 (553)
.+++++++.|.+.|.+|...|.. -...++.+...+.+--.++.+.|.++||+..|.+|++.++..++.++....+-
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve 88 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE 88 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 78999999999999999876642 23445444444444444555899999999999999999998877655444444
Q ss_pred hHHHhhhccchhHHHHHHHHHHHHHHhhcCh-------hhhhhhHHHHHHHHhc--CCCcchhhhHhhhhHhhcCCCChH
Q 008806 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRE-------SDLVDWYIPLVKRLAA--GEWFTARVSACGLFHIAYPSAPDI 159 (553)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-------~~~~~~~l~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~ 159 (553)
.++.++.... .+-|..+.-+|......+++ ..+-..+.|.+..... .+...++..++++++.+..++|.-
T Consensus 89 ~L~~~~~s~k-eq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~l 167 (1233)
T KOG1824|consen 89 NLCSNMLSGK-EQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTL 167 (1233)
T ss_pred HHhhhhccch-hhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhccc
Confidence 4555555444 34577777778887777765 1223345566655432 344568999999998887776654
Q ss_pred ---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhh-------------------------------------
Q 008806 160 ---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL------------------------------------- 199 (553)
Q Consensus 160 ---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~------------------------------------- 199 (553)
....++..+.--+..+...||+.++.++|.++...+++.+
T Consensus 168 l~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r 247 (1233)
T KOG1824|consen 168 LPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHR 247 (1233)
T ss_pred CcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcch
Confidence 4555666666666777788999999999888877664211
Q ss_pred ----hhhHHHHHHHhh---hCCChhHHHHHHHHHHHhhccCCcch--hhhchHHHHHHhc--------------------
Q 008806 200 ----KTDIMSIFEDLT---QDDQDSVRLLAVEGCAALGKLLEPQD--CVAHILPVIVNFS-------------------- 250 (553)
Q Consensus 200 ----~~~l~p~l~~~~---~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~l~-------------------- 250 (553)
...+.|.+...+ +.++++.|+.++++++.+....+.+. +.+.++....+.+
T Consensus 248 ~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~e 327 (1233)
T KOG1824|consen 248 FGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLE 327 (1233)
T ss_pred hhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhh
Confidence 134677777777 67889999999999999998877642 2223333322211
Q ss_pred --------------CCCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-
Q 008806 251 --------------QDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP- 313 (553)
Q Consensus 251 --------------~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~- 313 (553)
+|.+|.||+++++++..++..-.+- .+.+.+-|.++..+++.+.+|+.....++-.+....++
T Consensus 328 d~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~ 407 (1233)
T KOG1824|consen 328 DEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPV 407 (1233)
T ss_pred ccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC
Confidence 2457999999999999888653211 12245677788888999999999888887776654321
Q ss_pred ---------------H---HHH----HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh--HHHhHHHHHHHhhCC
Q 008806 314 ---------------E---LAI----QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKD 369 (553)
Q Consensus 314 ---------------~---~~~----~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d 369 (553)
. +.. ..++..+.+.+.+++-+.|..+...+..+...++... ....++|.+...++|
T Consensus 408 ~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~D 487 (1233)
T KOG1824|consen 408 IEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLND 487 (1233)
T ss_pred cccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCC
Confidence 0 222 2334444444556666677788877777776554322 256788999999988
Q ss_pred CC--hHHHHHHHHHHHHhhhhhchhhHH---hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh---------ChhhhHH
Q 008806 370 EF--PDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---------GVGFFDD 435 (553)
Q Consensus 370 ~~--~~VR~~a~~~l~~~~~~~~~~~~~---~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---------~~~~~~~ 435 (553)
.+ ...+..++..+.......+++.+. ..+.|.+.....|+.+.+-..++...+.+.+.+ +...+..
T Consensus 488 kSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~ 567 (1233)
T KOG1824|consen 488 KSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVK 567 (1233)
T ss_pred ccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHH
Confidence 65 457777777777776666666542 455666667778999999999988888888764 2234455
Q ss_pred HHHHHHHHHc--cCCchHHHHHHHHHHHHHHHHhChhHHh---hhhhhhhhhhhh
Q 008806 436 KLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQKSHVLD 485 (553)
Q Consensus 436 ~l~~~l~~~l--~D~~~~VR~~a~~~l~~l~~~~~~~~~~---~~i~p~l~~~l~ 485 (553)
.+....++.+ +|.+.+||+.|+.++|.++.++|. +.. +.++|.+.+-++
T Consensus 568 ~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl~ 621 (1233)
T KOG1824|consen 568 TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-FLGNELPRTLPILLERLG 621 (1233)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHh
Confidence 5655555544 588899999999999999999993 333 345555555444
No 10
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.4e-18 Score=168.51 Aligned_cols=467 Identities=16% Similarity=0.149 Sum_probs=295.6
Q ss_pred HHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCC-cHHHHHHHHHHhhccccccCCc--chhhcchh
Q 008806 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGV--EHAHVLLP 89 (553)
Q Consensus 14 ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~ 89 (553)
+...+.+.|+.+|....++.+.++.++|- +.|+|++.. |.+. +.+-|+...++..+++...|.. .+..-++.
T Consensus 481 mrpDidn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 481 MRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred hcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 33455689999999999999999999984 569999999 7765 7788888888887777766552 35556778
Q ss_pred HHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhh--HHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH----HHHH
Q 008806 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW--YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTE 163 (553)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~--~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~ 163 (553)
++...+.|++..||..+..++..+++...+..++.+ ++..+++-....--..-.+.+.++|.+++...++ +..+
T Consensus 557 ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTre 636 (1172)
T KOG0213|consen 557 IIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTRE 636 (1172)
T ss_pred HHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHH
Confidence 888899999999999999999999887766433322 3333333322222222233445556665555444 2223
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch--hhhhhHHHHH----------------------------------
Q 008806 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIF---------------------------------- 207 (553)
Q Consensus 164 l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~l~p~l---------------------------------- 207 (553)
++-++..=.+.++.+.++.+++.+.+.+..-|-+ .+..+++|.+
T Consensus 637 vmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~ 716 (1172)
T KOG0213|consen 637 VMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP 716 (1172)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH
Confidence 3333333344444444444444444433332210 0111111110
Q ss_pred -----HHhhhCCChhHHHHHHHHHHHhhc------------------------------------------cCCc--chh
Q 008806 208 -----EDLTQDDQDSVRLLAVEGCAALGK------------------------------------------LLEP--QDC 238 (553)
Q Consensus 208 -----~~~~~d~~~~vr~~a~~~l~~l~~------------------------------------------~~~~--~~~ 238 (553)
..-+.|+.+.-|...+++...+.. .++. +.+
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy 796 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY 796 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence 001123333333333333322222 2222 234
Q ss_pred hhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---hCCCcc--------------------------------------
Q 008806 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEA---VGPEPT-------------------------------------- 277 (553)
Q Consensus 239 ~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~---~~~~~~-------------------------------------- 277 (553)
.+.+...+...++++++.||..++..++.++.. ++.+..
T Consensus 797 lpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccc
Confidence 566777777777777777777776666555432 221111
Q ss_pred ----ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh----hCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh
Q 008806 278 ----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 278 ----~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~----~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
...++|.+.-.|++....|..+++.-++.++.. ++..++. .+.--+..++...+..+|.++...++.|++.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM-RIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM-RICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 123555555555666666666666666666542 2332332 2333444555666777888888888888887
Q ss_pred hCHHhHHH-------------------------------hHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh--HHh
Q 008806 350 LGKDATIE-------------------------------QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQ 396 (553)
Q Consensus 350 ~~~~~~~~-------------------------------~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~--~~~ 396 (553)
.|+..... .++|.+.+-...++..|+...++++.-+.+.+|.-. +.-
T Consensus 956 IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy 1035 (1172)
T KOG0213|consen 956 IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY 1035 (1172)
T ss_pred cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH
Confidence 77765432 234555555556778899999999999999887532 236
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh---ChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHh
Q 008806 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM 473 (553)
Q Consensus 397 ~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~ 473 (553)
.+.|.|.+.+.|.+...|+.++.++..++..+ |.+...-+++..++...-++++.|.++..+++..+...+|+....
T Consensus 1036 av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~ 1115 (1172)
T KOG0213|consen 1036 AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAML 1115 (1172)
T ss_pred HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHH
Confidence 78899999999999999999999999998753 555556678888888888999999999999999999999998777
Q ss_pred hhhhhhhhhhhh
Q 008806 474 QHITPQKSHVLD 485 (553)
Q Consensus 474 ~~i~p~l~~~l~ 485 (553)
+.+++.|+.-..
T Consensus 1116 ~Y~~QGLFHPar 1127 (1172)
T KOG0213|consen 1116 KYCLQGLFHPAR 1127 (1172)
T ss_pred HHHHHhccCcHH
Confidence 778877776543
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.8e-19 Score=171.18 Aligned_cols=471 Identities=15% Similarity=0.184 Sum_probs=334.7
Q ss_pred HHHHHHHhcCccHH-HHHHHhhhHHHHHHhhChHHH---hhhhhhhhhh---cCCCcHHHHHHHHHHhhccccc----cC
Q 008806 11 IAVLIDELKNDDIQ-LRLNSIRRLSTIARALGEERT---RKELIPFLSE---NNDDDDEVLLAMAEELGVFIPY----VG 79 (553)
Q Consensus 11 i~~ll~~L~~~d~~-~R~~a~~~l~~i~~~~~~~~~---~~~ll~~l~~---~~d~~~~vr~~~~~~l~~l~~~----~~ 79 (553)
|..++.+..++.+. +|..++++++.++.+.+|+.. .+.++..+.+ -..++..||.++..+|.+-.+. +.
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~ 210 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFN 210 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555555554 899999999999999998632 4455555555 3456788999999888654332 23
Q ss_pred CcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhh----HHHHHHHHhcCCCcchhhhHhhhhHhhcC-
Q 008806 80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW----YIPLVKRLAAGEWFTARVSACGLFHIAYP- 154 (553)
Q Consensus 80 ~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~----~l~~l~~~~~~~~~~~r~~~~~~l~~l~~- 154 (553)
.+...+.+.+......+.+|.+++.+|+.+|.+++...-+ ....+ ++++-.....+++..+..-+++..+.++.
T Consensus 211 ~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~-~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE 289 (859)
T KOG1241|consen 211 NEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE-FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE 289 (859)
T ss_pred cHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 3444567777777777888999999999999999876432 22233 44444455567777787777776553321
Q ss_pred --------------CCCh-------HHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHH
Q 008806 155 --------------SAPD-------ILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 206 (553)
Q Consensus 155 --------------~~~~-------~~~~~l~~~l~~ll~-------d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~ 206 (553)
...+ ...+.++|.+.+++. |++|...+++..+|.-++...++ ++.+.++|+
T Consensus 290 EiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D-~Iv~~Vl~F 368 (859)
T KOG1241|consen 290 EIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD-DIVPHVLPF 368 (859)
T ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc-cchhhhHHH
Confidence 1111 123468888888663 45799999999999999998884 566799999
Q ss_pred HHHhhhCCChhHHHHHHHHHHHhhccCCcc---hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc----cc
Q 008806 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RM 279 (553)
Q Consensus 207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~----~~ 279 (553)
+.+-+..++|.-|.+|+-+++.+...-.+. ......+|.+..+..|++-.||..++++||.++..++.... ..
T Consensus 369 iee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~ 448 (859)
T KOG1241|consen 369 IEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQ 448 (859)
T ss_pred HHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhh
Confidence 998999999999999999999998875543 34556889999999999999999999999999988764332 23
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-----------HHHHHhHHHHHHHhcc--C-CcHHHHHHHHHHHHh
Q 008806 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-----------ELAIQHILPCVKELSS--D-SSQHVRSALASVIMG 345 (553)
Q Consensus 280 ~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-----------~~~~~~l~~~l~~l~~--d-~~~~vr~~~~~~l~~ 345 (553)
..++.+.+.++|+ |.|-.++++++..+.+.... +.+.+.++..+..... | .+...|.++..+|+.
T Consensus 449 ~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmE 527 (859)
T KOG1241|consen 449 SKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALME 527 (859)
T ss_pred HHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 4667777777765 67777777777777654311 0122333333332221 2 335667777666666
Q ss_pred hhhhhCHHh--------------------------------------------------------HHHhHHHHHHHhhCC
Q 008806 346 MAPLLGKDA--------------------------------------------------------TIEQLLPIFLSLLKD 369 (553)
Q Consensus 346 l~~~~~~~~--------------------------------------------------------~~~~l~p~l~~~l~d 369 (553)
+.+...++. ..+.++..+++.++.
T Consensus 528 lIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s 607 (859)
T KOG1241|consen 528 LIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFES 607 (859)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcC
Confidence 655332211 124556666666665
Q ss_pred -CChHHHHHHHHHHHHhhhhhchhhH--HhhHHHHHHHhh-cCCCcHHHHHHHHHHHHHHhhhChhh--hHHHHHHHHHH
Q 008806 370 -EFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQ 443 (553)
Q Consensus 370 -~~~~VR~~a~~~l~~~~~~~~~~~~--~~~ll~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~ 443 (553)
.+..|-+.|+.+++.++..+|..+. -+.+.|.|...+ +-.++.|-.+++..+|.++..++.+. |.+.++..+.+
T Consensus 608 ~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq 687 (859)
T KOG1241|consen 608 KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQ 687 (859)
T ss_pred CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4456788899999999999988753 367788877776 44678899999999999999998764 55677888888
Q ss_pred HccCC--chHHHHHHHHHHHHHHHHhChhHHh--hhhhhhhhhhh
Q 008806 444 WLQDK--VYSIRDAAANNLKRLAEEFGPEWAM--QHITPQKSHVL 484 (553)
Q Consensus 444 ~l~D~--~~~VR~~a~~~l~~l~~~~~~~~~~--~~i~p~l~~~l 484 (553)
.++.+ ..+|+-..+.++|.|+-.+|.+|.. +.++|.+....
T Consensus 688 ~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 688 CLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88765 4689999999999999999988764 67888777655
No 12
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.87 E-value=3.9e-19 Score=168.93 Aligned_cols=460 Identities=17% Similarity=0.185 Sum_probs=323.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh--cCCCcHHHHHHHHHHhhccccccCC--cchhhc
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGG--VEHAHV 86 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~--~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~ 86 (553)
+..++.+.++..+..|..+++.|..-+...|++...+.++|.++. +.|.. |..+...+..+...+++ ..|.+.
T Consensus 170 v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqe---rhl~vk~idr~Ly~lddl~~pyvhk 246 (975)
T COG5181 170 VYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQE---RHLVVKLIDRLLYGLDDLKVPYVHK 246 (975)
T ss_pred HHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhh---hHhHHHHHHHHHHhcccccccceee
Confidence 556778889999999999999999988899999889999999988 44433 33333333332221111 111111
Q ss_pred -----------------------chhHH---------Hh---hhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHH
Q 008806 87 -----------------------LLPPL---------ET---LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131 (553)
Q Consensus 87 -----------------------l~~~l---------~~---l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~ 131 (553)
+.++. .. -..+.++.||.....+.+.+++.++ .+.++|++.
T Consensus 247 ILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~alg----v~~llpfl~ 322 (975)
T COG5181 247 ILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALG----VEELLPFLE 322 (975)
T ss_pred EEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhC----cHHHHHHHH
Confidence 11111 01 1124567788888888877777765 456899999
Q ss_pred HHhcCC-CcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchh------hh-
Q 008806 132 RLAAGE-WFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH------LK- 200 (553)
Q Consensus 132 ~~~~~~-~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~------~~- 200 (553)
.++.+. +|+.|..++.+..+++...|-. +...++..+.+++.|.+..||..++.++..+++..++-. +.
T Consensus 323 a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~ 402 (975)
T COG5181 323 ALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLC 402 (975)
T ss_pred HHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHH
Confidence 999886 8999999999999888777655 667889999999999999999999999998888776400 00
Q ss_pred --------------------------------------------------------------------------------
Q 008806 201 -------------------------------------------------------------------------------- 200 (553)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (553)
T Consensus 403 pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~ 482 (975)
T COG5181 403 PLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQ 482 (975)
T ss_pred HHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008806 201 -------------------------------------------------------------------------------- 200 (553)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (553)
T Consensus 483 v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErle 562 (975)
T COG5181 483 VSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLE 562 (975)
T ss_pred hcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHH
Confidence
Q ss_pred ----------------------------------------hhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC---cch
Q 008806 201 ----------------------------------------TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE---PQD 237 (553)
Q Consensus 201 ----------------------------------------~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~ 237 (553)
..|+..+...+++..+.||..|++.++.++..+. ...
T Consensus 563 erl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~ 642 (975)
T COG5181 563 ERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK 642 (975)
T ss_pred HHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH
Confidence 1122233344566667777777777666665432 110
Q ss_pred h------------------------------------------hhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Q 008806 238 C------------------------------------------VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275 (553)
Q Consensus 238 ~------------------------------------------~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~ 275 (553)
. ...++|.+...+.++..+|....+..+|.++..-+..
T Consensus 643 ~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey 722 (975)
T COG5181 643 ELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY 722 (975)
T ss_pred HHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc
Confidence 0 0123333444444555556666666666666543332
Q ss_pred ccccchHHHH---HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH
Q 008806 276 PTRMDLVPAY---VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 352 (553)
Q Consensus 276 ~~~~~llp~l---~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (553)
....+.+.++ +..++.-+.++|.+|..+++.+++.+|++.++..++ .-++..+.+.|....-+++-.++..|+
T Consensus 723 i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~Ll----nnLkvqeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 723 IGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILL----NNLKVQERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHH----hcchHHHHHhhhhhhhhhhhhHhhcCc
Confidence 2223333333 344566778899999999999999999876554444 344445566666666677777777776
Q ss_pred HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh--
Q 008806 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-- 428 (553)
Q Consensus 353 ~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~-- 428 (553)
-. ++|.+..-...++..|+...+++++-+.+.+|... +--.+.|.+.+.+.|.+...|+.+...+..++..+
T Consensus 799 fs----VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 799 FS----VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred hh----hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 53 57777777778889999999999999999988754 23678899999999999999999999999998764
Q ss_pred -ChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhh
Q 008806 429 -GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLD 485 (553)
Q Consensus 429 -~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~ 485 (553)
|.+...-+++..++..+-|+++.|.++..+++..+...+|+.-....+...|+.-.+
T Consensus 875 tg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~ 932 (975)
T COG5181 875 TGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPSS 932 (975)
T ss_pred cccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCchH
Confidence 445555578888888888999999999999999999999988776777777765443
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.4e-18 Score=162.55 Aligned_cols=458 Identities=17% Similarity=0.166 Sum_probs=337.7
Q ss_pred cCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cC-CCcHHHHHHHHHHhhccccccCC-cchhhcchhHHHhhh
Q 008806 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGG-VEHAHVLLPPLETLC 95 (553)
Q Consensus 19 ~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~-d~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~l~ 95 (553)
.++..++|..-+++...+-...|.+ ....|.|...+ ++ ..+..+|.......+.++.+... +.....+...+.+-.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~-~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQ-NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL 105 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHH-HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc
Confidence 4556677766666655554444443 35678888877 43 34667888877777777765443 333334455555555
Q ss_pred ccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH--HHHHHHHHHHHhcC
Q 008806 96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQ 173 (553)
Q Consensus 96 ~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~~~l~~ll~ 173 (553)
+.+.+.+|++...++..+....... ....+++.+.++.+..+..-|..+...+..+....+.+ ....++..+.....
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~~-~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~ 184 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKGL-SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAII 184 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhcc-CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhc
Confidence 6778999999999998877665432 23456777888877777777888888777777766555 45667888888888
Q ss_pred CCCHHHHH-HHHHHHHHHHhhhCc--hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhc
Q 008806 174 DDMPMVRR-SAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS 250 (553)
Q Consensus 174 d~~~~Vr~-~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~ 250 (553)
|..+.-++ .+.-++......+|+ +...-.++|.+..-..|....||.+|..+...+...++...... ++|.+...+
T Consensus 185 dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-llpsll~~l 263 (569)
T KOG1242|consen 185 DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-LLPSLLGSL 263 (569)
T ss_pred ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-hhhhhHHHH
Confidence 88665444 577777777777774 23344566666677789999999999999999988887765533 445444444
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhc
Q 008806 251 QDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS 328 (553)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~ 328 (553)
.+..|+.+.++++.+|.++...+.. ...+.++|.+.+.+.|..++||.++..++..+++.+....+ ..++|.+...+
T Consensus 264 ~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l 342 (569)
T KOG1242|consen 264 LEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDAL 342 (569)
T ss_pred HHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHh
Confidence 4449999999999999888765433 23467999999999999999999999999999998876664 67889999999
Q ss_pred cCCcHHHHHHHHHHHHh-hhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhc-hhh---HHhhHHHHHH
Q 008806 329 SDSSQHVRSALASVIMG-MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDL---LSQSLLPAIV 403 (553)
Q Consensus 329 ~d~~~~vr~~~~~~l~~-l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~-~~~---~~~~ll~~l~ 403 (553)
.|++..+..+.-..... +...... .....++|++...+.+.+...++.++..++.++.... +.. +.+.++|-+.
T Consensus 343 ~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk 421 (569)
T KOG1242|consen 343 ADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK 421 (569)
T ss_pred cCcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence 99987665544322211 2222222 3467889999999999999999999999999998873 332 3478888888
Q ss_pred HhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchH-HHHHHHHHHHHHHHHhChhHHhhhhhhhhhh
Q 008806 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQHITPQKSH 482 (553)
Q Consensus 404 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~-VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~ 482 (553)
....|+.+.+|..+..+++.+.+..|...+ +...|.+....++.... -|..+++.++.+....|.+.. ..++|.+..
T Consensus 422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~-~~~~~~~~a 499 (569)
T KOG1242|consen 422 ENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV-EDILPEILA 499 (569)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH-HHHHHHHHH
Confidence 888999999999999999999999999877 67889998888775544 488889999999998886643 456665554
Q ss_pred h
Q 008806 483 V 483 (553)
Q Consensus 483 ~ 483 (553)
.
T Consensus 500 ~ 500 (569)
T KOG1242|consen 500 N 500 (569)
T ss_pred H
Confidence 3
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.84 E-value=4.6e-18 Score=176.12 Aligned_cols=460 Identities=18% Similarity=0.136 Sum_probs=328.8
Q ss_pred CCCcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcch
Q 008806 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (553)
Q Consensus 5 ~~~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 83 (553)
.+.-.-+..++..+.+.|...|..+--.+..+.. .+++ ...-....++. +.++++.+|..|.++++.+. .++.
T Consensus 38 ~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~-~~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~ 111 (526)
T PF01602_consen 38 YDISFLFMEVIKLISSKDLELKRLGYLYLSLYLH-EDPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEM 111 (526)
T ss_dssp ---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT-TSHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHH
T ss_pred CCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-cchh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccch
Confidence 3344455666667777777777776666555532 2222 22334455555 78889999999999998875 3456
Q ss_pred hhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCCh---HH
Q 008806 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---IL 160 (553)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~ 160 (553)
...+.+.+.+++.|+++.||+.|+.++..+....++ .....+.+.+.+++.|+++.++.+|+.++..+ ..-+. ..
T Consensus 112 ~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~ 189 (526)
T PF01602_consen 112 AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL 189 (526)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh
Confidence 677888888888899999999999999999887543 33222788888999999999999999998888 21111 24
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhh
Q 008806 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (553)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (553)
...+...+.+++.+++++++..+++.+..++..-........+++.+...+.+.++.|...++.++..+... .....
T Consensus 190 ~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~ 266 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQ 266 (526)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHH
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHH
Confidence 566667777777899999998888888766543222111146777777778888899998888888866643 22456
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhH
Q 008806 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (553)
Q Consensus 241 ~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 320 (553)
.+.+.+.+++.+.++.+|..+++.+..++...+.... .....+..+..|++..+|..++..+..++.. +. ...+
T Consensus 267 ~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~---~n-~~~I 340 (526)
T PF01602_consen 267 KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANE---SN-VKEI 340 (526)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H---HH-HHHH
T ss_pred hhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccc---cc-hhhH
Confidence 6888889999999999999999999998765311111 2222233444588899999998888776653 33 3456
Q ss_pred HHHHHHhccC-CcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHH
Q 008806 321 LPCVKELSSD-SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (553)
Q Consensus 321 ~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll 399 (553)
++.+...+.+ .+..+|..++..++.++..+.+. .++.++.+.+++......+...+...+..+...... ....++
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~--~~~~~l 416 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE--LREKIL 416 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT--THHHHH
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh--hhHHHH
Confidence 6777777744 47779999999999999887554 566788899999888788888888888888765322 235567
Q ss_pred HHHHHhhcC-CCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhh
Q 008806 400 PAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (553)
Q Consensus 400 ~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p 478 (553)
..+.+.+.+ .+..++..++..+|..+...+.......++..+.....+....||..++.++.++....+.....+.+.+
T Consensus 417 ~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~ 496 (526)
T PF01602_consen 417 KKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQ 496 (526)
T ss_dssp HHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHH
Confidence 777777665 5678999999999999888776114566777787888888899999999999999998875444456677
Q ss_pred hhhhhhh
Q 008806 479 QKSHVLD 485 (553)
Q Consensus 479 ~l~~~l~ 485 (553)
.+.....
T Consensus 497 ~~~~~~~ 503 (526)
T PF01602_consen 497 FLLSLAT 503 (526)
T ss_dssp HHHCHHH
T ss_pred HHHHHhc
Confidence 6666665
No 15
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.84 E-value=8.1e-18 Score=174.33 Aligned_cols=434 Identities=18% Similarity=0.187 Sum_probs=321.4
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhc-c
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV-L 87 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-l 87 (553)
.++.+...|+|+++.+|..|++.++.++ ..+..+.+.+.+.+ +.|+++.||+.|+.++..+.+..++ .... +
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~~ 153 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDEL 153 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGGH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHHH
Confidence 4678889999999999999999999885 44556788888888 8899999999999999998875433 2222 6
Q ss_pred hhHHHhhhccchhHHHHHHHHHHHHHHhhcChh--hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHH-HHH
Q 008806 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-TEL 164 (553)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-~~l 164 (553)
.+.+..++.|+++.|+..|+.++..+ +.-++. .....+.+.+.+...+.++-.+...++++..+++.-..... ..+
T Consensus 154 ~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~ 232 (526)
T PF01602_consen 154 IPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRI 232 (526)
T ss_dssp HHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHH
T ss_pred HHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHH
Confidence 88888888999999999999999888 322222 23344555555555777777788888888776654333321 678
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHH
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 244 (553)
++.+..++++.++.|...+++++..+.. .......+.+.+..++.+.++++|..++..+..++...++... ....
T Consensus 233 i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~ 307 (526)
T PF01602_consen 233 IEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSL 307 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhh
Confidence 8888888888889998888887775443 3335678888899999999999999999999999876522211 2223
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCHHHHHHhHHHH
Q 008806 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (553)
Q Consensus 245 ~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (553)
.+..+..|.+..+|..+++.+..++..-. ...+++.+.+.+.+. +.++|..++.+++.++..+.+. .+..++.
T Consensus 308 ~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n----~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~ 381 (526)
T PF01602_consen 308 ILFFLLYDDDPSIRKKALDLLYKLANESN----VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDT 381 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHH
T ss_pred hhheecCCCChhHHHHHHHHHhhcccccc----hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHH
Confidence 33445558888999999999888875421 245788888888544 7889999999999999877443 2455566
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCC-CChHHHHHHHHHHHHhhhhhch-hhHHhhHHHH
Q 008806 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPA 401 (553)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d-~~~~VR~~a~~~l~~~~~~~~~-~~~~~~ll~~ 401 (553)
+.+++...+..+...+...+..+....+.. ...++..+.+.+.+ .++.++..++..+|+.+...+. + ....++..
T Consensus 382 l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~ 458 (526)
T PF01602_consen 382 LLKLLEISGDYVSNEIINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRS 458 (526)
T ss_dssp HHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHH
T ss_pred HHHhhhhccccccchHHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHH
Confidence 777777777777777777777776543322 34456777777765 5678999999999999988765 2 33566777
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHcc--CCchHHHHHHHHHHHHHH
Q 008806 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 402 l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~--D~~~~VR~~a~~~l~~l~ 464 (553)
+.+...+.+..+|..++.++..+....+.....+.+.+.+.++.+ +.+.+||+.|...+.-+-
T Consensus 459 l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 459 LIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 777777778899999999999999877765555678888888888 889999999998776543
No 16
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.5e-17 Score=160.37 Aligned_cols=433 Identities=16% Similarity=0.157 Sum_probs=326.4
Q ss_pred hhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhc-cchhHHHHHHHHHHHHHHhhcChhhhhhh-H
Q 008806 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDW-Y 126 (553)
Q Consensus 50 l~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~-~ 126 (553)
++++.. -.|..+.+|..+..+.......-|. +....+.|.+.+.++ ..++.+|....-..+.++.++...+-..+ +
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~-~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQHGD-QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHhhhH-HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 444444 5677888998888887766654443 344567777766444 55788898888888888888765443322 4
Q ss_pred HHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhh-hhhHHH
Q 008806 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL-KTDIMS 205 (553)
Q Consensus 127 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~l~p 205 (553)
+..+.+..+-++..+|.+...++..+...........+.+.+.++++.+...-|..++..+..+....+-+.. ...++.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~ 177 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLD 177 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHH
Confidence 4555555666778899998888887766555556677888888888888888899999988888876654332 335677
Q ss_pred HHHHhhhCCChhH-HHHHHHHHHHhhccCCc--chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 008806 206 IFEDLTQDDQDSV-RLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282 (553)
Q Consensus 206 ~l~~~~~d~~~~v-r~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ll 282 (553)
.+.+...|..... |+.+..+.......+++ +.+.-.++|.+.....|....||.++..+...+...+..... +.++
T Consensus 178 ~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~ll 256 (569)
T KOG1242|consen 178 NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLL 256 (569)
T ss_pred HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhh
Confidence 7777788876554 44566666666655554 345556788888889999999999999999999988876664 4566
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHH
Q 008806 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360 (553)
Q Consensus 283 p~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 360 (553)
|.++.-+.+..|.-+.++++.++.+....+.+ ...+.++|.+.+.+.|..+.||.++..++..++....... .+.+.
T Consensus 257 psll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~i 335 (569)
T KOG1242|consen 257 PSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKII 335 (569)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHH
Confidence 66666555558899999999999877765443 4578899999999999999999999999999998877665 56789
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHH--hhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhC-hh---hhH
Q 008806 361 PIFLSLLKDEFPDVRLNIISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG---FFD 434 (553)
Q Consensus 361 p~l~~~l~d~~~~VR~~a~~~l~~--~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~-~~---~~~ 434 (553)
|.+...+.|+...+.+.. ..|+. ++..+....+ ..+.|.+.+.+.+.+...+..++..++.+++.+. +. .|.
T Consensus 336 p~Lld~l~dp~~~~~e~~-~~L~~ttFV~~V~~psL-almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl 413 (569)
T KOG1242|consen 336 PTLLDALADPSCYTPECL-DSLGATTFVAEVDAPSL-ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL 413 (569)
T ss_pred HHHHHHhcCcccchHHHH-HhhcceeeeeeecchhH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence 999999999886665543 23322 3444444333 7889999999999999999999999999999883 32 466
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhhhhc
Q 008806 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLDCCQ 488 (553)
Q Consensus 435 ~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~~~~ 488 (553)
+.++|.+-..+.|+.++||..+.++++.+.+..|.+.. +...|.+.+...++.
T Consensus 414 ~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k 466 (569)
T KOG1242|consen 414 PSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEK 466 (569)
T ss_pred HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccch
Confidence 77888888889999999999999999999999997755 789999998886543
No 17
>PRK09687 putative lyase; Provisional
Probab=99.84 E-value=1e-18 Score=161.32 Aligned_cols=253 Identities=20% Similarity=0.184 Sum_probs=192.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHH
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 244 (553)
.+.+.+++.|++..||..++.+|+.+.. +.+++.+..+++|++..+|..++.+|+.+...-.. ....+|
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~ 93 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFN 93 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHH
Confidence 4556667789999999999999886542 35667777778899999999999999997642111 234677
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHH
Q 008806 245 VIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (553)
Q Consensus 245 ~l~~l-~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (553)
.+..+ .+|+++.||.+++.+||.++..- ......++..+...+.|+++.||..++.+|+.+ +. +..++.
T Consensus 94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~----~~ai~~ 163 (280)
T PRK09687 94 ILNNLALEDKSACVRASAINATGHRCKKN--PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----ND----EAAIPL 163 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccc--cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CC----HHHHHH
Confidence 77765 78999999999999999875321 111234667777888899999999999998754 22 345677
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHH
Q 008806 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (553)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~ 403 (553)
+...++|+++.||..++.+|+.+.. + .+...+.+...++|.++.||..|+.+|+.+.. ...+|.|.
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~Li 229 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVLI 229 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHHH
Confidence 8888889999999999999998832 1 22467788888899999999999999988654 56788888
Q ss_pred HhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHcc-CCchHHHHHHHHHHHH
Q 008806 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKR 462 (553)
Q Consensus 404 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-D~~~~VR~~a~~~l~~ 462 (553)
..+++++ +|..++.+++.++ .+..+|.+..++. +++..|+..+.+++.+
T Consensus 230 ~~L~~~~--~~~~a~~ALg~ig--------~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 230 KELKKGT--VGDLIIEAAGELG--------DKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHcCCc--hHHHHHHHHHhcC--------CHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 8888876 5667778888776 2467888888886 7888999999888764
No 18
>PRK09687 putative lyase; Provisional
Probab=99.82 E-value=2.2e-18 Score=159.09 Aligned_cols=253 Identities=19% Similarity=0.196 Sum_probs=196.0
Q ss_pred HHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHH
Q 008806 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 206 (553)
Q Consensus 127 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~ 206 (553)
.+.+...+.|++..+|..++..++.+-. ..+++.+..+++|+++.+|..++.+|+.+...-. .....+|.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~~~ 94 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVFNI 94 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHHHH
Confidence 4556666788888899998888876643 4567777888899999999999999998754211 12356677
Q ss_pred HHHh-hhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHH
Q 008806 207 FEDL-TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 285 (553)
Q Consensus 207 l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l 285 (553)
+..+ .+|+++.||..|+.+++.++..-. .....+...+.....|++|.||..++.+|+.+. .+..++.+
T Consensus 95 L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~~L 164 (280)
T PRK09687 95 LNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIPLL 164 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHHHH
Confidence 7655 688999999999999998854211 112345666777888999999999999997653 34688999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHH
Q 008806 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS 365 (553)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~ 365 (553)
..+++|+++.||..|+.+|+.+. .+ .+...+.+...+.|.++.||..++.+++.+.. ...+|.+.+
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~Li~ 230 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVLIK 230 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHHHH
Confidence 99999999999999999999861 11 13556777788899999999999999988752 356888999
Q ss_pred hhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhc-CCCcHHHHHHHHHHHH
Q 008806 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPL 423 (553)
Q Consensus 366 ~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~~~~~l~~ 423 (553)
.+++++ +|..++.+|+.+.. +..+|.|..+++ +++..++..+.+++..
T Consensus 231 ~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 231 ELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 998866 78888899988876 567888998886 7889999988887753
No 19
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.82 E-value=5.3e-16 Score=154.63 Aligned_cols=471 Identities=15% Similarity=0.133 Sum_probs=311.9
Q ss_pred HHHHHHhhhHHHHHHhhCh--HHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchh
Q 008806 24 QLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEET 100 (553)
Q Consensus 24 ~~R~~a~~~l~~i~~~~~~--~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~ 100 (553)
.+|..++..++.+...+|. .+.-..++..+.- +...-..||+.++.+++.++...+..-|...+..++..+.+....
T Consensus 148 ai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~ 227 (1233)
T KOG1824|consen 148 AIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQM 227 (1233)
T ss_pred hhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCch
Confidence 3666666666666555542 1122333333333 445556678888888877777666655555555566666655544
Q ss_pred HHHHHHHHHHHHHHhhcChhh--hhhhHHHHHHHHh---cCCCcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhc
Q 008806 101 CVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLA---AGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLC 172 (553)
Q Consensus 101 ~vR~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll 172 (553)
..-+.-+.+++.++...+... ....+.|++.+++ +.++.+.|+.+++.++.+..+.+.+ ++++++..+.+.+
T Consensus 228 ~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yi 307 (1233)
T KOG1824|consen 228 SATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYI 307 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHh
Confidence 444456667777766554422 2234667777666 5566677888888877777777665 4555555555543
Q ss_pred C----------------------------------CCCHHHHHHHHHHHHHHHhhhCc--hhhhhhHHHHHHHhhhCCCh
Q 008806 173 Q----------------------------------DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQD 216 (553)
Q Consensus 173 ~----------------------------------d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~~~d~~~ 216 (553)
. |-+|.||+++++++..++..-.+ ..+.+.+-|.+...+++.++
T Consensus 308 sYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREE 387 (1233)
T KOG1824|consen 308 SYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREE 387 (1233)
T ss_pred ccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhh
Confidence 2 22699999999999988764332 34566778888888899999
Q ss_pred hHHHHHHHHHHHhhccCCc--------c-----------h----hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 008806 217 SVRLLAVEGCAALGKLLEP--------Q-----------D----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 273 (553)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~--------~-----------~----~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~ 273 (553)
+|+.-.+.+...+....+. + . ....+...+.+.+.+++-+.|......|..++..++
T Consensus 388 nVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp 467 (1233)
T KOG1824|consen 388 NVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP 467 (1233)
T ss_pred hHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc
Confidence 9998888877776654322 0 0 012244445556667777788888888888887765
Q ss_pred CCcc--ccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHHhhCHHHHH---HhHHHHHHHhccCCcHHHHHHHHHHHHhh
Q 008806 274 PEPT--RMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAI---QHILPCVKELSSDSSQHVRSALASVIMGM 346 (553)
Q Consensus 274 ~~~~--~~~llp~l~~ll~d~~--~~vr~~a~~~l~~~~~~~~~~~~~---~~l~~~l~~l~~d~~~~vr~~~~~~l~~l 346 (553)
.... ...++|.+...+.|.. ...+..++..+.......+++.|. ..+.|.+.....|+.+++-..++..+.++
T Consensus 468 ~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~l 547 (1233)
T KOG1824|consen 468 GALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQL 547 (1233)
T ss_pred chhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHH
Confidence 4332 3468899999998875 456777777776666666777653 34566667777899999988888888888
Q ss_pred hhhhCH---------HhHHHhHHHHHHHhh--CCCChHHHHHHHHHHHHhhhhhchhhHH---hhHHHHHHHhhcCCCcH
Q 008806 347 APLLGK---------DATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWR 412 (553)
Q Consensus 347 ~~~~~~---------~~~~~~l~p~l~~~l--~d~~~~VR~~a~~~l~~~~~~~~~~~~~---~~ll~~l~~~~~d~~~~ 412 (553)
++.+-+ ..+...+.....+.+ +|.+.+||+.|+.+++.++..+|. ... +..+|.+.+-+ .+.-
T Consensus 548 vkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-~l~~eL~~~L~il~eRl--~nEi 624 (1233)
T KOG1824|consen 548 VKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-FLGNELPRTLPILLERL--GNEI 624 (1233)
T ss_pred HHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHH--hchh
Confidence 876433 222233344444444 688899999999999999998883 222 44555555444 3557
Q ss_pred HHHHHHHHHHHHHhhh---ChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh---HHhhhhhhhhhhhhhh
Q 008806 413 VRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQKSHVLDC 486 (553)
Q Consensus 413 vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~---~~~~~i~p~l~~~l~~ 486 (553)
+|.+++.++..|+... +......+++|.+...+.-.....|.+...++..++++.+.. ...+.++-.+-.++..
T Consensus 625 TRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise 704 (1233)
T KOG1824|consen 625 TRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE 704 (1233)
T ss_pred HHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH
Confidence 8999999999998653 334456778899988888888899999999999999987643 2335555555556655
Q ss_pred hcccccchhhh
Q 008806 487 CQWSLMHQKTE 497 (553)
Q Consensus 487 ~~~~~~~~~~~ 497 (553)
.+.+....+..
T Consensus 705 sdlhvt~~a~~ 715 (1233)
T KOG1824|consen 705 SDLHVTQLAVA 715 (1233)
T ss_pred HHHHHHHHHHH
Confidence 55454444433
No 20
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.81 E-value=7.5e-18 Score=181.89 Aligned_cols=241 Identities=22% Similarity=0.186 Sum_probs=105.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHH
Q 008806 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246 (553)
Q Consensus 167 ~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l 246 (553)
.+.+.++|+++.||+.++..|+.+.. +..+|.|...++|+++.||..|+.+|..+....+. .+.+
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L 689 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APAL 689 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHH
Confidence 33444455555555555555554321 12334444444555555555555555444322111 1223
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHH
Q 008806 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE 326 (553)
Q Consensus 247 ~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~ 326 (553)
...++|+++.||.+++..|+.+.. . -.+.+.+.+.|+++.||.+|+.+|+.+. .. +.+..
T Consensus 690 ~~~L~~~d~~VR~~A~~aL~~~~~--------~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~----~~-------~~l~~ 749 (897)
T PRK13800 690 RDHLGSPDPVVRAAALDVLRALRA--------G-DAALFAAALGDPDHRVRIEAVRALVSVD----DV-------ESVAG 749 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhcc--------C-CHHHHHHHhcCCCHHHHHHHHHHHhccc----Cc-------HHHHH
Confidence 333444555555555555544320 0 0123344455555555555555554321 00 11233
Q ss_pred hccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhh
Q 008806 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (553)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~ 406 (553)
.+.|+++.||..++.+|+.+...-. ...+.+..+++|+++.||..|+.+|+.+... +.+.+.+...+
T Consensus 750 ~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~aL 816 (897)
T PRK13800 750 AATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATAAL 816 (897)
T ss_pred HhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHHHh
Confidence 4455555555555555554432100 1133444555555555555555555544321 11222344444
Q ss_pred cCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 008806 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (553)
Q Consensus 407 ~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l 463 (553)
.|++|.+|..++.+++.+. . +.-++.+..++.|++..||..|+.+|+.+
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~----~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 817 RASAWQVRQGAARALAGAA----A----DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCChHHHHHHHHHHHhcc----c----cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 5555555555555554432 0 12234444455555555555555555554
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.80 E-value=9.2e-18 Score=181.21 Aligned_cols=274 Identities=20% Similarity=0.173 Sum_probs=215.6
Q ss_pred HHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHH
Q 008806 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 206 (553)
Q Consensus 127 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~ 206 (553)
++.+...++|+++.+|..|+..++.+.. ...++.+.++++|+++.||..++.+|+.+....+. .+.
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~ 688 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APA 688 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHH
Confidence 4566677889999999999999988753 44677888889999999999999999988654432 134
Q ss_pred HHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q 008806 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 286 (553)
Q Consensus 207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~ 286 (553)
+...+.++++.||..++.+|+.+... . ...+.+.+.|+++.||..++.+|+.+. . .+.+.
T Consensus 689 L~~~L~~~d~~VR~~A~~aL~~~~~~----~-----~~~l~~~L~D~d~~VR~~Av~aL~~~~----~-------~~~l~ 748 (897)
T PRK13800 689 LRDHLGSPDPVVRAAALDVLRALRAG----D-----AALFAAALGDPDHRVRIEAVRALVSVD----D-------VESVA 748 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhccC----C-----HHHHHHHhcCCCHHHHHHHHHHHhccc----C-------cHHHH
Confidence 55567889999999999999886521 0 134566889999999999999998752 1 14466
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHh
Q 008806 287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 366 (553)
Q Consensus 287 ~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~ 366 (553)
.++.|+++.||.+++.+|+.+...- ....+.+..+++|+++.||.+++.+|+.+... +.+.+.+...
T Consensus 749 ~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~a 815 (897)
T PRK13800 749 GAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATAA 815 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHHH
Confidence 7899999999999999998765421 12356777889999999999999999888631 1234557788
Q ss_pred hCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHcc
Q 008806 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 446 (553)
Q Consensus 367 l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~ 446 (553)
++|+++.||..|+.+|+.+.. +..++.|..+++|+++.||..++.+|+.+... +...+.+...++
T Consensus 816 L~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~-------~~a~~~L~~al~ 880 (897)
T PRK13800 816 LRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWPGD-------PAARDALTTALT 880 (897)
T ss_pred hcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCC-------HHHHHHHHHHHh
Confidence 999999999999999987643 44568888899999999999999999998322 234566778899
Q ss_pred CCchHHHHHHHHHHHH
Q 008806 447 DKVYSIRDAAANNLKR 462 (553)
Q Consensus 447 D~~~~VR~~a~~~l~~ 462 (553)
|++..||..|.++|..
T Consensus 881 D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 881 DSDADVRAYARRALAH 896 (897)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999999864
No 22
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.80 E-value=4.3e-16 Score=172.17 Aligned_cols=467 Identities=14% Similarity=0.100 Sum_probs=327.9
Q ss_pred HHHHHHHhcCccH---------HHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCC-cHHHHHHHHHHhhccccccC
Q 008806 11 IAVLIDELKNDDI---------QLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVG 79 (553)
Q Consensus 11 i~~ll~~L~~~d~---------~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~-~~~vr~~~~~~l~~l~~~~~ 79 (553)
++.|+..+.+++. ..+..|+.+|+.++... ..+++++-+ +.+. +..+...++..+..+.....
T Consensus 276 Ip~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d 349 (2102)
T PLN03200 276 IPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGALAYALMVFD 349 (2102)
T ss_pred HHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcC
Confidence 5666666665442 34778888888887432 457777766 3332 33333333344444332222
Q ss_pred Cc-chh-----hcchhHHHhhhccchhH-HHHHHHHHHHHHHhhcCh--hhhhhhHHHHHHHHhcCCCcchhhhHhhhhH
Q 008806 80 GV-EHA-----HVLLPPLETLCTVEETC-VRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFH 150 (553)
Q Consensus 80 ~~-~~~-----~~l~~~l~~l~~~~~~~-vR~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~ 150 (553)
.. ... ..+.+.|.+++.+.++. +...+.++|..+.....- -.......+.+..++...+.+++..++..+.
T Consensus 350 ~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~ 429 (2102)
T PLN03200 350 SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALS 429 (2102)
T ss_pred CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHH
Confidence 21 111 23446677888766555 366677777553322110 0011234566777777777889999999988
Q ss_pred hhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHHHHH
Q 008806 151 IAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAV 223 (553)
Q Consensus 151 ~l~~~~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~ 223 (553)
.++..-.+. .....++.+.+++.+++..+|+.++..++.++..-.. .......+|.+.+++.+++..+|+.|+
T Consensus 430 ~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAa 509 (2102)
T PLN03200 430 SLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSA 509 (2102)
T ss_pred HHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 888663332 2233589999999999999999999999999863322 112345789999999999999999999
Q ss_pred HHHHHhhccCCc-ch-h-hhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHH
Q 008806 224 EGCAALGKLLEP-QD-C-VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300 (553)
Q Consensus 224 ~~l~~l~~~~~~-~~-~-~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a 300 (553)
.++++++..-.. .. . ....+|.+.+++++.+++++..++++|.++... + ....++.+..++..+++.++..+
T Consensus 510 wAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~-~----d~~~I~~Lv~LLlsdd~~~~~~a 584 (2102)
T PLN03200 510 TVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT-A----DAATISQLTALLLGDLPESKVHV 584 (2102)
T ss_pred HHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-c----chhHHHHHHHHhcCCChhHHHHH
Confidence 999999874211 11 1 235788889999999999999999999999764 2 22355778888888888999999
Q ss_pred HHHHHHHHHhhCHHHH------HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH---HhHHHhHHHHHHHhhCCCC
Q 008806 301 AGKVTKFCRILNPELA------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEF 371 (553)
Q Consensus 301 ~~~l~~~~~~~~~~~~------~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~ 371 (553)
+..++.+....+.+.. .+..+|.+.+++++.+..+++.+++++..++..-.+ .......+|.+..+++..+
T Consensus 585 L~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~ 664 (2102)
T PLN03200 585 LDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT 664 (2102)
T ss_pred HHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC
Confidence 9999888775443321 134789999999999999999999999999863322 1234567889999999999
Q ss_pred hHHHHHHHHHHHHhhhhhchhh----HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHc
Q 008806 372 PDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWL 445 (553)
Q Consensus 372 ~~VR~~a~~~l~~~~~~~~~~~----~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l 445 (553)
.+++..++.+|..+......+. .....+|.|.+++.+++..++..++.++..++...... ......+|.+..++
T Consensus 665 ~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL 744 (2102)
T PLN03200 665 EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVL 744 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH
Confidence 9999999999999986433221 23557888999999999999999999999998764322 23345789999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHhChhH------Hhhhhhhhhhhhhhhhc
Q 008806 446 QDKVYSIRDAAANNLKRLAEEFGPEW------AMQHITPQKSHVLDCCQ 488 (553)
Q Consensus 446 ~D~~~~VR~~a~~~l~~l~~~~~~~~------~~~~i~p~l~~~l~~~~ 488 (553)
++....+|+.|+.++.++++....+. .....+..|..+++..+
T Consensus 745 r~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~ 793 (2102)
T PLN03200 745 REGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD 793 (2102)
T ss_pred HhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 99999999999999999998876443 12345666666665443
No 23
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.79 E-value=7.9e-15 Score=138.95 Aligned_cols=472 Identities=12% Similarity=0.092 Sum_probs=311.8
Q ss_pred HHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcH-HHHHHHHHHhhccccccCCcchh----hcch
Q 008806 15 IDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-EVLLAMAEELGVFIPYVGGVEHA----HVLL 88 (553)
Q Consensus 15 l~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~----~~l~ 88 (553)
+..|.+..+..-.+|...+++|+.---|...|+++...+.. ..+..| .+.+.....++..++...++... ..++
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~ 179 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILF 179 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHH
Confidence 46788999988889999999998777788888888887766 555544 47777778888888765553221 2233
Q ss_pred hHHHh-hhccchhHHHHHHHHHHHHHHh----hcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhc----CCCChH
Q 008806 89 PPLET-LCTVEETCVRDKAVESLCRIGS----QMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY----PSAPDI 159 (553)
Q Consensus 89 ~~l~~-l~~~~~~~vR~~a~~~l~~l~~----~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~----~~~~~~ 159 (553)
.+..- +.+.++..||.+++.+|..-+. .+..+.-.+++++......+.++.++...+..++..+. ......
T Consensus 180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y 259 (858)
T COG5215 180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY 259 (858)
T ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 3345678899999988877332 33344556678888888888888888887776666543 222222
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-Cch------------------hhhhhHHHHHHHhhh-------C
Q 008806 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV-EPA------------------HLKTDIMSIFEDLTQ-------D 213 (553)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~-~~~------------------~~~~~l~p~l~~~~~-------d 213 (553)
..+-+.....+..++++..|...+.+-...+++-- +.+ ....+++|.+.+++. +
T Consensus 260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~ 339 (858)
T COG5215 260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG 339 (858)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 44455566666778888888888888777666421 100 012346777776663 3
Q ss_pred CChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcC
Q 008806 214 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLR 290 (553)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~llp~l~~ll~ 290 (553)
++|++-.+|..++.-+++..+... ....+.++.+.+..++|.-|.+++.++|.+.+.-... ...++.+|.+...+.
T Consensus 340 DdWn~smaA~sCLqlfaq~~gd~i-~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~ 418 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKGDKI-MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS 418 (858)
T ss_pred cccchhhhHHHHHHHHHHHhhhHh-HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc
Confidence 467888888888877777766543 3447777888888888888888888888887642211 123567788888888
Q ss_pred CCcHHHHHHHHHHHHHHHHhhC----HH-------------------------------------------HHHHhHHHH
Q 008806 291 DNEAEVRIAAAGKVTKFCRILN----PE-------------------------------------------LAIQHILPC 323 (553)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~----~~-------------------------------------------~~~~~l~~~ 323 (553)
|+.--|+..++++++++..++. +. .+...+.+.
T Consensus 419 D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~a 498 (858)
T COG5215 419 DSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLA 498 (858)
T ss_pred cceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHH
Confidence 8777777777787777765431 10 011111111
Q ss_pred H----HHh--ccCCcHHHHHHHHHHHHhhhhhhCHHhH------HHhHH-------HHHHHhhC--C--CChHHHHHHHH
Q 008806 324 V----KEL--SSDSSQHVRSALASVIMGMAPLLGKDAT------IEQLL-------PIFLSLLK--D--EFPDVRLNIIS 380 (553)
Q Consensus 324 l----~~l--~~d~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~-------p~l~~~l~--d--~~~~VR~~a~~ 380 (553)
+ ... ..+.+...|.++..+++.+......... .+.+. ....+.+. | ...++....+.
T Consensus 499 i~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~ 578 (858)
T COG5215 499 ILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIG 578 (858)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 1 111 1234556777788888877765443221 11111 11111121 1 12356666666
Q ss_pred HHHHhhhhhch--hhHHhhHHHHHHHhhcCC-CcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHccCCchHHHHH
Q 008806 381 KLDQVNQVIGI--DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDA 455 (553)
Q Consensus 381 ~l~~~~~~~~~--~~~~~~ll~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~ 455 (553)
.+..++...+. +...+.++..+.+.++.. ...+-.....+++.++..+++. .+.+.++|++.+.++..+..|-..
T Consensus 579 vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~ 658 (858)
T COG5215 579 VLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNS 658 (858)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHH
Confidence 77777776665 345577888888888776 3445667788889888888765 477889999999999999999999
Q ss_pred HHHHHHHHHHHhChhHHh--hhhhhhhhhhhhhh
Q 008806 456 AANNLKRLAEEFGPEWAM--QHITPQKSHVLDCC 487 (553)
Q Consensus 456 a~~~l~~l~~~~~~~~~~--~~i~p~l~~~l~~~ 487 (553)
|+..+|.++..+|.++.. +.++..|.+.++.+
T Consensus 659 avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 659 AVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 999999999999987653 56777777777654
No 24
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=6.3e-17 Score=165.11 Aligned_cols=290 Identities=19% Similarity=0.207 Sum_probs=185.4
Q ss_pred cchhhhHhhhhHhhcCCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc------hhhhhhHHHHHHHhh
Q 008806 139 FTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLT 211 (553)
Q Consensus 139 ~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~l~p~l~~~~ 211 (553)
...|..|++++..++.+...+ ..+.++|.+..++.|+...||..|..+|..+...+.+ ..+.+.|+|.+..++
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 344555555555555555544 4455555555555555555555555555554443321 123345555555555
Q ss_pred hC-CChhHHHHHHHHHHHhhccCCcchhhhchHHHHHH-----hcCCCCHHHH--HHHHHHHHHHHHHhCCCccccchHH
Q 008806 212 QD-DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-----FSQDKSWRVR--YMVANQLYELCEAVGPEPTRMDLVP 283 (553)
Q Consensus 212 ~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-----l~~d~~~~vR--~~~~~~l~~l~~~~~~~~~~~~llp 283 (553)
+| ....||.+-+.+++.+|.... .++..-.. ..+|.+.+.. ...-.-++.+ .+.+-.
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA~------rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L---------~~~V~~ 581 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTAY------RFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL---------HHTVEQ 581 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHHH------HHHHHHHHHHhcccccCcccccccccccchHHHHH---------HHHHHH
Confidence 55 344455555555555543210 01111111 1122211100 0000000000 112445
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHH
Q 008806 284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363 (553)
Q Consensus 284 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l 363 (553)
....++.|+++-||++.++++..++.++|.+.--+.+++.+..+++|++|+.|.++...+..++-.+|.....+.++|++
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl 661 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLL 661 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHH
Confidence 56678899999999999999999999999987778899999999999999999999999999999999988889999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHhhhhhchhh-HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHH
Q 008806 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (553)
Q Consensus 364 ~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~-~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~ 442 (553)
.+.|.|..+.|-..|+.++..+++.---+. ....++....-++-++|-.+|.+++..|..++..++.....-.+.|.+-
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~ir 741 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIR 741 (1431)
T ss_pred HHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhH
Confidence 999999999999999999999987421111 1133444444566789999999999999999998877654433444443
Q ss_pred H
Q 008806 443 Q 443 (553)
Q Consensus 443 ~ 443 (553)
.
T Consensus 742 p 742 (1431)
T KOG1240|consen 742 P 742 (1431)
T ss_pred H
Confidence 3
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.78 E-value=1.8e-15 Score=167.42 Aligned_cols=472 Identities=13% Similarity=0.088 Sum_probs=331.5
Q ss_pred cHHHHHHHhcC-ccHHHHHHHhhhHHHHHHhhChHHH----hhhhhhhhhh-cCC---------CcHHHHHHHHHHhhcc
Q 008806 10 PIAVLIDELKN-DDIQLRLNSIRRLSTIARALGEERT----RKELIPFLSE-NND---------DDDEVLLAMAEELGVF 74 (553)
Q Consensus 10 ~i~~ll~~L~~-~d~~~R~~a~~~l~~i~~~~~~~~~----~~~ll~~l~~-~~d---------~~~~vr~~~~~~l~~l 74 (553)
.+..++..|.+ .+..+|..|+..|..++.+ +++.. ...-+|.+.+ +.. .+...++.+..+|+++
T Consensus 232 aVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~-s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNI 310 (2102)
T PLN03200 232 AVKQLLKLLGQGNEVSVRAEAAGALEALSSQ-SKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANI 310 (2102)
T ss_pred CHHHHHHHHccCCChHHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHH
Confidence 47888888876 5668999999999988753 12211 1233343433 222 2345688889999998
Q ss_pred ccccCCcchhhcchhHHHhhhccc-hhHHHHHHHHHHHHHHhhcChhh--hh----hhHHHHHHHHhcCCCcc-hhhhHh
Q 008806 75 IPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMRESD--LV----DWYIPLVKRLAAGEWFT-ARVSAC 146 (553)
Q Consensus 75 ~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~~~~~--~~----~~~l~~l~~~~~~~~~~-~r~~~~ 146 (553)
+... ..+++.+..+.... +..+-..++.++..+...++... .. ..+.+.+.+++.++++. +...+.
T Consensus 311 cgg~------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~ 384 (2102)
T PLN03200 311 CGGM------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERII 384 (2102)
T ss_pred hCCc------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHH
Confidence 8632 34666666655433 43333344445544443333211 11 13457777888877655 366777
Q ss_pred hhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHH
Q 008806 147 GLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRL 220 (553)
Q Consensus 147 ~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~ 220 (553)
.++..++.+..-. ...+..+.+..|+...+.+++..++.++..++..-.+ .......+|.+.+++.+++..++.
T Consensus 385 eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~ 464 (2102)
T PLN03200 385 EALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQE 464 (2102)
T ss_pred HHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHH
Confidence 7776665544221 2345678888999999999999999999998864221 112234678899999999999999
Q ss_pred HHHHHHHHhhccCCcc---hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcCCCc
Q 008806 221 LAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNE 293 (553)
Q Consensus 221 ~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~llp~l~~ll~d~~ 293 (553)
.|+..++.++..-+.. ......+|.+.+++...+..++..+++++++++.. ..+ ......+|.+++++++.+
T Consensus 465 ~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd 543 (2102)
T PLN03200 465 YAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGG 543 (2102)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 9999999998643221 11235799999999999999999999999999862 111 112357899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH------HHhHHHHHHHhh
Q 008806 294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT------IEQLLPIFLSLL 367 (553)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~p~l~~~l 367 (553)
+.++..|+.+|..+...-..+ .++.+..++...+..++..++..++.+....+.+.. ....+|.+.+++
T Consensus 544 ~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL 618 (2102)
T PLN03200 544 PKGQEIAAKTLTKLVRTADAA-----TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL 618 (2102)
T ss_pred HHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH
Confidence 999999999999987653332 335566777777888888889999888765444321 134689999999
Q ss_pred CCCChHHHHHHHHHHHHhhhhhch---hhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh----hHHHHHHH
Q 008806 368 KDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGAL 440 (553)
Q Consensus 368 ~d~~~~VR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~----~~~~l~~~ 440 (553)
+.++..+++.|+.++..++..-.. .......+|.+..++.+.+..++..++.+++.+......+. .....+|.
T Consensus 619 ~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~p 698 (2102)
T PLN03200 619 SSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKP 698 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHH
Confidence 999999999999999999863221 12335667888888899999999999999999986443332 22346889
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHHHhChh--HHhhhhhhhhhhhhhhhcccccch
Q 008806 441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQKSHVLDCCQWSLMHQ 494 (553)
Q Consensus 441 l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~--~~~~~i~p~l~~~l~~~~~~~~~~ 494 (553)
+..++++++..++..++.+|..+...-... ......+|.|.+++.+.+.+.++.
T Consensus 699 L~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~ 754 (2102)
T PLN03200 699 LIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRN 754 (2102)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHH
Confidence 999999999999999999999999765322 233667899999998765544443
No 26
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.77 E-value=3.3e-14 Score=134.84 Aligned_cols=452 Identities=14% Similarity=0.132 Sum_probs=312.1
Q ss_pred ccHHHHHHHhhhHHH----HHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCC---cchhhcchhHHH
Q 008806 21 DDIQLRLNSIRRLST----IARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG---VEHAHVLLPPLE 92 (553)
Q Consensus 21 ~d~~~R~~a~~~l~~----i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~ 92 (553)
.+..+|..|++.|.. +-..+..+.-++.+++.+.+ .+..+.+++.++..||.++....-+ ....+.+..+..
T Consensus 190 t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~ 269 (858)
T COG5215 190 TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTG 269 (858)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999888765 22334445667888888888 7888899999999999888763211 111223444445
Q ss_pred hhhccchhHHHHHHHHHHHHHHhh----------cChhh---------hhhhHHHHHHHHhc-------CCCcchhhhHh
Q 008806 93 TLCTVEETCVRDKAVESLCRIGSQ----------MRESD---------LVDWYIPLVKRLAA-------GEWFTARVSAC 146 (553)
Q Consensus 93 ~l~~~~~~~vR~~a~~~l~~l~~~----------~~~~~---------~~~~~l~~l~~~~~-------~~~~~~r~~~~ 146 (553)
.....++++|...+++....+++. +++.. ....++|.+.+++. +++|.+-.+|.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 566788999999999999888753 12100 01236777766653 35689999998
Q ss_pred hhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHHHHH
Q 008806 147 GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAV 223 (553)
Q Consensus 147 ~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~ 223 (553)
.++...+...++.....++..+.+-+..++|.-|++++-++|.+...-.. -.+.++.+|.+....+|+.-.|+..++
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA 429 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA 429 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence 88888888888887788999999999999999999999999998763221 124466778888888899999999999
Q ss_pred HHHHHhhccCCcchh-hhchHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCCCc--ccc-------chHHHHHHh--c
Q 008806 224 EGCAALGKLLEPQDC-VAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPEP--TRM-------DLVPAYVRL--L 289 (553)
Q Consensus 224 ~~l~~l~~~~~~~~~-~~~ll~~l~~l~~d--~~~~vR~~~~~~l~~l~~~~~~~~--~~~-------~llp~l~~l--l 289 (553)
.+++.++..+....- ..++.+.....+.. ..+.+-...++++..++..+.+.. ... .++..+++. .
T Consensus 430 wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~ 509 (858)
T COG5215 430 WCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTEL 509 (858)
T ss_pred HHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHh
Confidence 999999877543211 12334433332211 234445555666666666554321 111 223333222 2
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHH------HHHHhHHHHHHHhc---------cCC--cHHHHHHHHHHHHhhhhhhCH
Q 008806 290 RDNEAEVRIAAAGKVTKFCRILNPE------LAIQHILPCVKELS---------SDS--SQHVRSALASVIMGMAPLLGK 352 (553)
Q Consensus 290 ~d~~~~vr~~a~~~l~~~~~~~~~~------~~~~~l~~~l~~l~---------~d~--~~~vr~~~~~~l~~l~~~~~~ 352 (553)
.+++.+.|.++..+|+.+....+.. .+.+.+...+.+.+ +|. -..+....+..+..+....++
T Consensus 510 ~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~ 589 (858)
T COG5215 510 ALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR 589 (858)
T ss_pred hccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4677889999999999988765432 11222222221111 111 235667778888888888877
Q ss_pred --HhHHHhHHHHHHHhhCCCCh-HHHHHHHHHHHHhhhhhchh--hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhh
Q 008806 353 --DATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (553)
Q Consensus 353 --~~~~~~l~p~l~~~l~d~~~-~VR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~ 427 (553)
+...+.++.++++.++...+ .+-.....+++.+...++.. .+.+.+.|.+...++..++.+-..++..++.++..
T Consensus 590 ~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlant 669 (858)
T COG5215 590 DIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANT 669 (858)
T ss_pred CcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 55677899999999976643 45666777888888777654 34578899999888888899999999999999999
Q ss_pred hChhh--hHHHHHHHHHHHccCC--chHHHHHHHHHHHHHHHHhChhHH
Q 008806 428 LGVGF--FDDKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEFGPEWA 472 (553)
Q Consensus 428 ~~~~~--~~~~l~~~l~~~l~D~--~~~VR~~a~~~l~~l~~~~~~~~~ 472 (553)
+|.++ +.+.++..+.+.++.+ ..+++-+.+.++|.|+-.+|..|.
T Consensus 670 l~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~ 718 (858)
T COG5215 670 LGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFE 718 (858)
T ss_pred hhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHH
Confidence 98875 4566777777877764 457999999999999999998765
No 27
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=8.3e-15 Score=138.73 Aligned_cols=375 Identities=15% Similarity=0.101 Sum_probs=276.1
Q ss_pred hhhccchhHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH---HHHHHH
Q 008806 93 TLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELR 165 (553)
Q Consensus 93 ~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~ 165 (553)
..++|.-.+-|++|..-+.++.+.+-. +.+...+-.+...+..+.+...|.++.-.+..++-.+|.+ +.+.++
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv 86 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIV 86 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhh
Confidence 344566677788777777777764422 2222222235566666777777776655555544444443 788999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchh--hhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc----chhh
Q 008806 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCV 239 (553)
Q Consensus 166 ~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~ 239 (553)
+.+..++.|++..||..+++++-++++....+. ..+.++..+.++..|.+.+||.+| +.+..+.+-+.. ....
T Consensus 87 ~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL 165 (675)
T KOG0212|consen 87 PPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSL 165 (675)
T ss_pred HHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCH
Confidence 999999999999999999999999999887653 457889999999999999998654 445444443222 2235
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--H
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--L 315 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~ 315 (553)
+.++|.+...+.+.++.+|..+...+..+-..-+-+. +.+.+++.+.+.+.|+..+||..+-..++.+...+..+ .
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 6799999999999999999999888876654322221 23578999999999999999998888888887766332 1
Q ss_pred -HHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH--HHhHHHHHHHhhCCCCh-HHHHHHHHHHHHhhhhhch
Q 008806 316 -AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGI 391 (553)
Q Consensus 316 -~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~-~VR~~a~~~l~~~~~~~~~ 391 (553)
-....++.+..-++.+++.++..++.++..+.+..|++.. ...++..+..++.|.+. .++..+...-+.+....+.
T Consensus 246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~ 325 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS 325 (675)
T ss_pred cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence 1245667777778889999999999999999998888753 34455556666666655 5777666555555554443
Q ss_pred hhH-----HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh--hHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 392 DLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 392 ~~~-----~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
+.. ...++..+...+.++....|.+++.++..+-...+.+. +...+.+.+++.++|++.+|-..++..+..++
T Consensus 326 ~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 326 ERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred hhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 321 25788889999999999999999999999988877664 34668899999999999999999999999998
Q ss_pred HHhC
Q 008806 465 EEFG 468 (553)
Q Consensus 465 ~~~~ 468 (553)
..-.
T Consensus 406 ~s~~ 409 (675)
T KOG0212|consen 406 SSSN 409 (675)
T ss_pred cCcc
Confidence 7543
No 28
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.73 E-value=2.2e-14 Score=137.04 Aligned_cols=435 Identities=16% Similarity=0.153 Sum_probs=296.3
Q ss_pred HHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCC-cHHHHHHHHHHhhccccccCCc--chhhcchh
Q 008806 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGV--EHAHVLLP 89 (553)
Q Consensus 14 ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~ 89 (553)
+...++|.|+.+|....++.+.+++++|- ++++|++.. |.+. +.+-|+...++..+++..+|.. .+..-++.
T Consensus 286 mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ 361 (975)
T COG5181 286 MRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLK 361 (975)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHH
Confidence 33456799999999999999999999985 569999988 6664 7788888888888777766653 24445666
Q ss_pred HHHhhhccchhHHHHHHHHHHHHHHhhcChhhhh---hh-----------------------------------------
Q 008806 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLV---DW----------------------------------------- 125 (553)
Q Consensus 90 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~---~~----------------------------------------- 125 (553)
++..++.|+...||..+..++..+++...+..++ ..
T Consensus 362 ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre 441 (975)
T COG5181 362 CISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTRE 441 (975)
T ss_pred HHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHH
Confidence 6777888999999999888888888765542111 00
Q ss_pred HHHHHHHHhcCCC-------------------------------------cchhhhH-----------hhhhH-------
Q 008806 126 YIPLVKRLAAGEW-------------------------------------FTARVSA-----------CGLFH------- 150 (553)
Q Consensus 126 ~l~~l~~~~~~~~-------------------------------------~~~r~~~-----------~~~l~------- 150 (553)
.+.++.+..++++ |..|.+. ..+++
T Consensus 442 ~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~ 521 (975)
T COG5181 442 HMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPR 521 (975)
T ss_pred HHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChH
Confidence 1111222222221 1111111 00000
Q ss_pred ---hhcCCCCh-------------------------------------------------------------------HH
Q 008806 151 ---IAYPSAPD-------------------------------------------------------------------IL 160 (553)
Q Consensus 151 ---~l~~~~~~-------------------------------------------------------------------~~ 160 (553)
.+.....+ .+
T Consensus 522 v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~ 601 (975)
T COG5181 522 VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPH 601 (975)
T ss_pred HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcc
Confidence 00000000 01
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhC---chhhh-------------------------------------
Q 008806 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE---PAHLK------------------------------------- 200 (553)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~---~~~~~------------------------------------- 200 (553)
...++..+..+++++.+.||..++..++.++..+. +....
T Consensus 602 l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 602 LSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred hHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 22366666777888899999999998888876543 21111
Q ss_pred -----hhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc----hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 008806 201 -----TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (553)
Q Consensus 201 -----~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 271 (553)
..|+|.+.-.+.+....|....+..++.++...+.. .+....+ -+...+..-+..+|+++..++|.+++.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf-eLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICF-ELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 234444444555666667677777777777654432 2222222 223334445567999999999999999
Q ss_pred hCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhC
Q 008806 272 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 351 (553)
Q Consensus 272 ~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~ 351 (553)
.|+ +.++..+++.++-++-.-|....-+++.+++..|+- .++|.+..--+.++..|+..+++++..+.+..|
T Consensus 761 iGP----qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig 832 (975)
T COG5181 761 IGP----QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG 832 (975)
T ss_pred cCH----HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence 885 568889999898887777888888888888888864 456777776678899999999999999998888
Q ss_pred HHhH--HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhh---hchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHh
Q 008806 352 KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV---IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (553)
Q Consensus 352 ~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~---~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~ 426 (553)
.... .-.+.|++...+.|.++.-|+.+...+..+.-. .|.+...-.++..+..-.-++++.+.+...+++..++.
T Consensus 833 ~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~ 912 (975)
T COG5181 833 QASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFAT 912 (975)
T ss_pred HHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH
Confidence 6532 346789999999999999999998888877543 23333223344555555568899999999999999999
Q ss_pred hhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 427 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 427 ~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
.+|...+.. ++++.|-.|+..||..-+..+..+.-
T Consensus 913 ~lg~g~~m~----Yv~qGLFHPs~~VRk~ywtvyn~myv 947 (975)
T COG5181 913 VLGSGAMMK----YVQQGLFHPSSTVRKRYWTVYNIMYV 947 (975)
T ss_pred HhccHHHHH----HHHHhccCchHHHHHHHHHHHhhhhh
Confidence 999886554 55677889999999988877765553
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=99.72 E-value=6.5e-13 Score=137.31 Aligned_cols=433 Identities=12% Similarity=0.091 Sum_probs=239.1
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcch
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 88 (553)
.+.++.+.|++.+...|..|++.+-.. ..+|. + ...+.+-+.. +..++.++|+.+...+..+++.. ++..-..+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~-mt~G~-D-vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~--pelalLaI 107 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIAN-MTMGR-D-VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ--PEKALLAV 107 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCC-C-chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC--hHHHHHHH
Confidence 355666666666666666665543222 11221 1 1122222222 33444445554444444443311 11111223
Q ss_pred hHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-HHHHHHHH
Q 008806 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSI 167 (553)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~ 167 (553)
+.+.+-+.|+++.+|..|+.+++.+. ...+.+.+.+.+.+.+.|+++.||..|+-++..++...++. ....+.+.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 33333344444455544444443322 12233344444444444444555555444444444332222 11223344
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhh-------------------------------------Cc-hhhhhhHHHHHHH
Q 008806 168 YTQLCQDDMPMVRRSAASNLGKFAATV-------------------------------------EP-AHLKTDIMSIFED 209 (553)
Q Consensus 168 l~~ll~d~~~~Vr~~a~~~l~~l~~~~-------------------------------------~~-~~~~~~l~p~l~~ 209 (553)
+.+++.|+++.|...|+.+|..+.... +. +.....++..+..
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~ 263 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLP 263 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 444444555544444444444443221 11 1112345555555
Q ss_pred hhhCCChhHHHHHHHHHHHhhccCCcchhh---hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q 008806 210 LTQDDQDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 286 (553)
Q Consensus 210 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~ 286 (553)
.+.+.+..|...|++++..+....+.+... ..+.+.+..+ ...++.+|..+.+.+..+....+.-+ .. -+..+.
T Consensus 264 ~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf-~~-~~~~Ff 340 (746)
T PTZ00429 264 RMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLL-RT-NLDSFY 340 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHH-HH-HHHhhh
Confidence 667788899999999888887654332111 1132334444 34667899999999888877543211 11 234444
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHh
Q 008806 287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 366 (553)
Q Consensus 287 ~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~ 366 (553)
-..+|+. .||...++.|..++. .+. ...++.-+...+.+.+...+..++.+++.++..+.. ..+.++..+.++
T Consensus 341 ~~~~Dp~-yIK~~KLeIL~~Lan---e~N-v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~l 413 (746)
T PTZ00429 341 VRYSDPP-FVKLEKLRLLLKLVT---PSV-APEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQI 413 (746)
T ss_pred cccCCcH-HHHHHHHHHHHHHcC---ccc-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHH
Confidence 4556765 488877777766554 333 255667777788888999999999999999976654 366788888888
Q ss_pred hCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhh---cCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHH
Q 008806 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443 (553)
Q Consensus 367 l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~---~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~ 443 (553)
+.+... +...++..+..+.+..... .+++.+.... .=.+...|.+.+..+|+.+...... .+++..+..
T Consensus 414 l~~~~~-~v~e~i~vik~IlrkyP~~----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a---~~~L~~~i~ 485 (746)
T PTZ00429 414 VDRRPE-LLPQVVTAAKDIVRKYPEL----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENG---KDIIQRFID 485 (746)
T ss_pred hcCCch-hHHHHHHHHHHHHHHCccH----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhH---HHHHHHHHh
Confidence 876544 3345677888887655432 2344444332 1136778999999999988665432 344544445
Q ss_pred HccCCchHHHHHHHHHHHHHHHHhCh
Q 008806 444 WLQDKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 444 ~l~D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
-+.+...+||.+.+.+..++.-...+
T Consensus 486 ~f~~E~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 486 TIMEHEQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred hhccCCHHHHHHHHHHHHHHHhcCcH
Confidence 55677889999999999888876653
No 30
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=9e-16 Score=156.83 Aligned_cols=297 Identities=18% Similarity=0.186 Sum_probs=231.3
Q ss_pred CCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc------chhhhchHHHHHH
Q 008806 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVN 248 (553)
Q Consensus 175 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~ 248 (553)
....-|.+|++.|..++..+..+...+.++|++..++.|.+..||..|+.++..+...+.+ ..+.++++|.+..
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 3566788899999999999999999999999999999999999999999999887665332 3467789999999
Q ss_pred hcCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHH-----HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHH
Q 008806 249 FSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV-----RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 322 (553)
Q Consensus 249 l~~d-~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~-----~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 322 (553)
+..| ....||.+.+..|+.++... ..++..-. ..++|++.+.. .-... .-+.+.....+-.
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA------~rFle~~q~~~~~g~~n~~nset~--~~~~~-----~~~~~~L~~~V~~ 581 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTA------YRFLELTQELRQAGMLNDPNSETA--PEQNY-----NTELQALHHTVEQ 581 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHH------HHHHHHHHHHHhcccccCcccccc--ccccc-----chHHHHHHHHHHH
Confidence 9999 67789999999999998752 11222111 12344443300 00000 0011122334445
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHH
Q 008806 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (553)
Q Consensus 323 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l 402 (553)
.+..++.|+.+.||.+.++.+..+|..||++...+.+++.+...|+|.++..|.+....+.-++-.+|.....+.++|.|
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl 661 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLL 661 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHH
Confidence 56778899999999999999999999999999899999999999999999999999999998888888887779999999
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHHhh-hChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhh
Q 008806 403 VELAEDRHWRVRLAIIEYIPLLASQ-LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKS 481 (553)
Q Consensus 403 ~~~~~d~~~~vR~~~~~~l~~i~~~-~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~ 481 (553)
.+.+.|...-|-..++.++..+.+. +=.+....+++..+..++..|+..||.+++..+..+...++.-...-.++|.+.
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~ir 741 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIR 741 (1431)
T ss_pred HHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhH
Confidence 9999999999999999999988865 222334456777777889999999999999999999998876543334555544
Q ss_pred hhh
Q 008806 482 HVL 484 (553)
Q Consensus 482 ~~l 484 (553)
..+
T Consensus 742 pfl 744 (1431)
T KOG1240|consen 742 PFL 744 (1431)
T ss_pred Hhh
Confidence 444
No 31
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.5e-13 Score=130.43 Aligned_cols=411 Identities=15% Similarity=0.163 Sum_probs=285.2
Q ss_pred cCCCcHHHHHHHHHHhhccccccCCcchhhc---chh-HHHhhhccchhHHHHHHHHHHHHHHhhcChhh--hhhhHHHH
Q 008806 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV---LLP-PLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDWYIPL 129 (553)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~-~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~--~~~~~l~~ 129 (553)
+.|.-.|-|++++.-+.++++.+-....... ++. +........+..-|+.++.++...+-.++.+. ..+.++|-
T Consensus 9 ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~P 88 (675)
T KOG0212|consen 9 LTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPP 88 (675)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHH
Confidence 4566677788888877777763322222222 222 23334445555567777777766655555433 34456777
Q ss_pred HHHHhcCCCcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch----hhhhh
Q 008806 130 VKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTD 202 (553)
Q Consensus 130 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~ 202 (553)
+..+.+|++..+|+.||+.+-.+++....+ +.+.++..+.++..|++..||.+ ++.+..+.+.+-.+ ...+.
T Consensus 89 v~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~ 167 (675)
T KOG0212|consen 89 VLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPE 167 (675)
T ss_pred HHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHH
Confidence 778899999999999999998888776555 77999999999999999999874 56666666654322 23578
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---c
Q 008806 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---T 277 (553)
Q Consensus 203 l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~---~ 277 (553)
++|.+.+-+.+.++..|...++.+..+-..-+-+ .+.+.+++.+.+.++|.+..||...-.+++++......+. .
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d 247 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMD 247 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 9999999999999999999998887765543333 3456789999999999999999888888888777654332 2
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH--HHHhHHHHHHHhccCCcH-HHHHHHHHHHHhhhhhhCH--
Q 008806 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGK-- 352 (553)
Q Consensus 278 ~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~l~~d~~~-~vr~~~~~~l~~l~~~~~~-- 352 (553)
.+..++++...+..+++.++..|+..+..+....|.+. ....++..+.+.+.|... ..+..+...-+.+...++.
T Consensus 248 ~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~ 327 (675)
T KOG0212|consen 248 YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSER 327 (675)
T ss_pred cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhh
Confidence 35789999999999999999999999999988777652 223444455555555544 4555444433334333332
Q ss_pred ---HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH--HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhh
Q 008806 353 ---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (553)
Q Consensus 353 ---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~--~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~ 427 (553)
+.....++..+.+.+.++..+.|.+++.-+..+....+.+.+ .+.+.+.|...+.|++..+-..++..+..++..
T Consensus 328 ~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 328 LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 223457888899999999999999999999988888777653 377888888899999999999999999888865
Q ss_pred hChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 428 LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 428 ~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
-....+. .++.-++.++.....-++..+.-.+.+++-.+.
T Consensus 408 ~~~~~~~-~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~ 447 (675)
T KOG0212|consen 408 SNSPNLR-KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLN 447 (675)
T ss_pred cccccHH-HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhC
Confidence 4332222 233333344444333344444444444444443
No 32
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=7e-14 Score=146.47 Aligned_cols=427 Identities=20% Similarity=0.228 Sum_probs=292.5
Q ss_pred cCCCcHHHHHHHHHHhhccccccCCcc----hhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhh-HHHHH
Q 008806 56 NNDDDDEVLLAMAEELGVFIPYVGGVE----HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW-YIPLV 130 (553)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~-~l~~l 130 (553)
+.+++|..|++.+..|=.++++.+... ...++...+..+++|.|.-++..|.++++-+-+. ++...++. +-.++
T Consensus 827 ~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYel-gd~~~k~~LV~sL~ 905 (1702)
T KOG0915|consen 827 LTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYEL-GDSSLKKSLVDSLV 905 (1702)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEec-CCchhHHHHHHHHH
Confidence 788999999999988877777777422 2345666677888899999999999888765443 33333333 33444
Q ss_pred HHHhcCCCcchhhhHh-hhh--HhhcCCCC---------------hHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHH
Q 008806 131 KRLAAGEWFTARVSAC-GLF--HIAYPSAP---------------DILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFA 191 (553)
Q Consensus 131 ~~~~~~~~~~~r~~~~-~~l--~~l~~~~~---------------~~~~~~l~~~l~~ll~d-~~~~Vr~~a~~~l~~l~ 191 (553)
..+.+.+-......+- +++ |.+-+..+ +-...+++-.|.+|.++ ..|.-|+.++-.++.++
T Consensus 906 ~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~ 985 (1702)
T KOG0915|consen 906 NTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIA 985 (1702)
T ss_pred HHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHH
Confidence 4555432211111110 111 11111110 01234677777777765 47899999999999999
Q ss_pred hhhCc--hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc--chhhhchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008806 192 ATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267 (553)
Q Consensus 192 ~~~~~--~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~ 267 (553)
+..+. +.....++|-+.+.--|++..|+.+....+..+..--.. +.+..+++.-+...+.++.|+||.+.|.++..
T Consensus 986 ~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~d 1065 (1702)
T KOG0915|consen 986 KQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALAD 1065 (1702)
T ss_pred HHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 98765 345678899999988999999999999999988754221 34566677777778899999999999999999
Q ss_pred HHHHhCCCccccc---hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh----------CHHHHHHhHHHHHHH-hccCCcH
Q 008806 268 LCEAVGPEPTRMD---LVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----------NPELAIQHILPCVKE-LSSDSSQ 333 (553)
Q Consensus 268 l~~~~~~~~~~~~---llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~----------~~~~~~~~l~~~l~~-l~~d~~~ 333 (553)
+...-+.+...+. ++..+.+.+.|=...||.+|-.+...+++.+ ....+.+.++|.+.. ...+.-.
T Consensus 1066 Ll~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~ 1145 (1702)
T KOG0915|consen 1066 LLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVN 1145 (1702)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchH
Confidence 9887554443333 4444555566766789988766655554432 123567788888753 3336678
Q ss_pred HHHHHHHHHHHhhhhhhCHHh--HHHhHHHHHHHhhCCCChHH-------------------HHHHH------HHHHHhh
Q 008806 334 HVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDV-------------------RLNII------SKLDQVN 386 (553)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~V-------------------R~~a~------~~l~~~~ 386 (553)
.||...+..+..+++..|... +...++|.+.+.+..-++.| |..++ +++..++
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci 1225 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCI 1225 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHH
Confidence 999999999999999888753 24567777777665433332 33333 2233333
Q ss_pred hhhchhhHHhhHHHHHHHhhcCC-CcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 008806 387 QVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (553)
Q Consensus 387 ~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l 463 (553)
..++...+ .+++|.+.++.... .-..|..+...+..++..+|.+ .+...++..++..+.|.+..||.+-+.++|.+
T Consensus 1226 ~~iD~~vL-eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L 1304 (1702)
T KOG0915|consen 1226 NYIDISVL-EELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYL 1304 (1702)
T ss_pred HhhhHHHH-HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence 44444433 78899998887654 6678888999999999988876 57788999999999999999999999999999
Q ss_pred HHHhChhHHhhhhhhhhhhhh
Q 008806 464 AEEFGPEWAMQHITPQKSHVL 484 (553)
Q Consensus 464 ~~~~~~~~~~~~i~p~l~~~l 484 (553)
...-.++.....+-..+...+
T Consensus 1305 ~k~Ss~dq~qKLie~~l~~~l 1325 (1702)
T KOG0915|consen 1305 AKFSSPDQMQKLIETLLADLL 1325 (1702)
T ss_pred HhcCChHHHHHHHHHHHHHHh
Confidence 998877554333333333333
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.66 E-value=4.6e-12 Score=131.11 Aligned_cols=429 Identities=12% Similarity=0.093 Sum_probs=275.3
Q ss_pred CcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhh
Q 008806 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85 (553)
Q Consensus 7 ~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 85 (553)
.+-.++.+...++++++.+|-.|+++++.+. .....+.+.+.+.. +.|.++.||+.|+.++.++.+..+.-....
T Consensus 103 alLaINtl~KDl~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~ 178 (746)
T PTZ00429 103 ALLAVNTFLQDTTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQ 178 (746)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccccc
Confidence 3345888889999999999999999888763 33445667777777 889999999999999988866433211122
Q ss_pred cchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHH---HhcCCCcchhhhHhhhhHhhcCCCChHHHH
Q 008806 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKR---LAAGEWFTARVSACGLFHIAYPSAPDILKT 162 (553)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~---~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 162 (553)
.+.+.+..++.|.++.|...|+.+|.++.+.-+. .+ ....+.+.+ .+.+-+.-.+....+++....+. ......
T Consensus 179 ~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~-~~~e~~ 255 (746)
T PTZ00429 179 DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-KI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS-DKESAE 255 (746)
T ss_pred chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-hh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC-CcHHHH
Confidence 3556677778899999999999999888765432 11 112222222 22222222333444444332111 122446
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhh----hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchh
Q 008806 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT----DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC 238 (553)
Q Consensus 163 ~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~----~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 238 (553)
.++..+...+++.++.|--++++++-.+....+++ ..+ .+.+.+..+ ...+.++|..++..+..+....+ ..+
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~-~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf 332 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE-LIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLL 332 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-HHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHH
Confidence 78888888889999999999999888877654322 222 233444444 45678999999999888776432 222
Q ss_pred hhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Q 008806 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 318 (553)
Q Consensus 239 ~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (553)
..+ +..+.-..+|+.. +|....+.|-.++.. .....++.-+.+...|.+.+.+..++.+++.++..++. ..+
T Consensus 333 ~~~-~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane----~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~ 404 (746)
T PTZ00429 333 RTN-LDSFYVRYSDPPF-VKLEKLRLLLKLVTP----SVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAP 404 (746)
T ss_pred HHH-HHhhhcccCCcHH-HHHHHHHHHHHHcCc----ccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHH
Confidence 222 2222334466664 888888877777532 21346778888888899999999999999999876643 246
Q ss_pred hHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh---CCCChHHHHHHHHHHHHhhhhhchhhHH
Q 008806 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLS 395 (553)
Q Consensus 319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l---~d~~~~VR~~a~~~l~~~~~~~~~~~~~ 395 (553)
.++..+..++.+....+. .++..+..+........ +++.+...+ .=.+++.|.+.++.+|+++..+.. .
T Consensus 405 ~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~~~----il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a 476 (746)
T PTZ00429 405 DCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPELL----MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---G 476 (746)
T ss_pred HHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCccHH----HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---H
Confidence 677777777766544343 45666666655444332 334443322 124678999999999999886642 1
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHH-Hcc-CCchHHHHHHHHHHHHH
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLQ-DKVYSIRDAAANNLKRL 463 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~-~l~-D~~~~VR~~a~~~l~~l 463 (553)
..++..+.+-..+.+..||...+.+...+......+. ...+..++. +.. |.+++||..|..-+.-+
T Consensus 477 ~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~--~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 477 KDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGM--EPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 3444444444456778899998888887775544331 233444443 434 57889999998765544
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=6.9e-14 Score=134.70 Aligned_cols=308 Identities=16% Similarity=0.166 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc
Q 008806 160 LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (553)
Q Consensus 160 ~~~~l~~~l~~ll~-d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (553)
....++|.+.+++. +.++.++..++.+|.+++..-.. ..+....+|.|..++.+++..|++.|+.+++.++...+.
T Consensus 106 i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 106 IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 44567888888774 77899999999999999974432 223446789999999999999999999999999865332
Q ss_pred ---chhhhchHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 008806 236 ---QDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308 (553)
Q Consensus 236 ---~~~~~~ll~~l~~l~~d~~~-~vR~~~~~~l~~l~~~~~~~~---~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~ 308 (553)
......+++.+..++..... ...+.+.++|.+++..-.+.. ....++|.+..++.+.|++|...|++++..+.
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 11222345555555554443 677889999999998653211 12468999999999999999999999999887
Q ss_pred HhhCHH---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh---HHHhHHHHHHHhhC-CCChHHHHHHHHH
Q 008806 309 RILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLK-DEFPDVRLNIISK 381 (553)
Q Consensus 309 ~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~-d~~~~VR~~a~~~ 381 (553)
..-... .+...++|.+..++...+..++..++.+++.++..-+... .....+|.+..++. .+...+|+.|+.+
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence 643221 2234578999999999999999999999999876433321 13466788888887 4555699999999
Q ss_pred HHHhhhhhchh---hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhh----HHHHHHHHHHHccCCchHHHH
Q 008806 382 LDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQDKVYSIRD 454 (553)
Q Consensus 382 l~~~~~~~~~~---~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~----~~~l~~~l~~~l~D~~~~VR~ 454 (553)
+..+...-... .+...++|.|..+++..++++|..|+.+++.+.....++.. ...+++.+..+|.-++..+-.
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~ 425 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIIL 425 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHH
Confidence 99997622111 23467899999999999999999999999998876655432 223567777888777777788
Q ss_pred HHHHHHHHHHHHh
Q 008806 455 AAANNLKRLAEEF 467 (553)
Q Consensus 455 ~a~~~l~~l~~~~ 467 (553)
.++.++..|.+.-
T Consensus 426 v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 426 VALDGLENILKVG 438 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887653
No 35
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.3e-11 Score=126.14 Aligned_cols=452 Identities=17% Similarity=0.134 Sum_probs=278.8
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhc--CCCcHHHHHHHHHHhhccccc-cCCcchhhcc
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN--NDDDDEVLLAMAEELGVFIPY-VGGVEHAHVL 87 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~--~d~~~~vr~~~~~~l~~l~~~-~~~~~~~~~l 87 (553)
+.+|+.++++.|..+|++|+++++.+..+++++ ...+.+..+..+ .-+++..+..++-+|++++.. +--+.....+
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dV 421 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDV 421 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 788889999999999999999999999998753 234444444441 112466788999999988762 2223344567
Q ss_pred hhHHHhhhc-c-------chhHHHHHHHHHHHHHHhhcChhhhhhh----HHHHHHHHhcCCCcchhhhHhhhhHhhcCC
Q 008806 88 LPPLETLCT-V-------EETCVRDKAVESLCRIGSQMRESDLVDW----YIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (553)
Q Consensus 88 ~~~l~~l~~-~-------~~~~vR~~a~~~l~~l~~~~~~~~~~~~----~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 155 (553)
.|++...+. | ....||.+|+..+..++....+...++. ..-++....-|++..+|.+|..++.....+
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR 501 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR 501 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc
Confidence 776655432 2 3467999999999999998887665552 223345566799999999998887766554
Q ss_pred CCh-----H-----------------------------HHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhhhCchhhh
Q 008806 156 APD-----I-----------------------------LKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLK 200 (553)
Q Consensus 156 ~~~-----~-----------------------------~~~~l~~~l~~-ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 200 (553)
.+. + +...++..+.. -+.+.+..+|..++.+|..+...-++ ...
T Consensus 502 ~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk-~~a 580 (1133)
T KOG1943|consen 502 QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK-YLA 580 (1133)
T ss_pred CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH-hhc
Confidence 322 0 11122222222 24567899999999999998876553 344
Q ss_pred hhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc---------chhhh---chHHHHHHhcCCC--CHHHHHHHHHHHH
Q 008806 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---------QDCVA---HILPVIVNFSQDK--SWRVRYMVANQLY 266 (553)
Q Consensus 201 ~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---------~~~~~---~ll~~l~~l~~d~--~~~vR~~~~~~l~ 266 (553)
...+|.+....-..+...|..+..+.+.+...+-. +.... +++|.+....-+. ..-.|.+.++.+.
T Consensus 581 ~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie 660 (1133)
T KOG1943|consen 581 DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIE 660 (1133)
T ss_pred ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHH
Confidence 44445454445556777787777777666543211 01111 1222222211111 2345666665555
Q ss_pred HHHHHhCCC----ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh--CHHHHHHhHHHH-HHHhccCCcHHHHHHH
Q 008806 267 ELCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL--NPELAIQHILPC-VKELSSDSSQHVRSAL 339 (553)
Q Consensus 267 ~l~~~~~~~----~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~--~~~~~~~~l~~~-l~~l~~d~~~~vr~~~ 339 (553)
.+... ... ...+....++.+.+.+++ .+|.+|..+++.++..+ ..+.....++.. +..+-+..+.++|...
T Consensus 661 ~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~ 738 (1133)
T KOG1943|consen 661 QLSLS-KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGL 738 (1133)
T ss_pred Hhhhc-cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHH
Confidence 55432 111 111223334444455555 79999999999887753 112111223333 3334445588999999
Q ss_pred HHHHHhhhhhhCHHhHHHhHHHHHHHhhC-CCChHHHHHHHHHHHHhhhhhch-------hhHHhhHHHHHHHhhcCC--
Q 008806 340 ASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-------DLLSQSLLPAIVELAEDR-- 409 (553)
Q Consensus 340 ~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~-------~~~~~~ll~~l~~~~~d~-- 409 (553)
..+++.+....=.....+.+...+..... |..++-|...+.++..++...+. +.+.+.++..+.+...|.
T Consensus 739 ~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rG 818 (1133)
T KOG1943|consen 739 ILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRG 818 (1133)
T ss_pred HHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCc
Confidence 98888887433222223444555555443 33788999999999999988772 223345555555554443
Q ss_pred --CcHHHHHHHHHHHHHHhhhC-hhhhHHHH----HHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 410 --HWRVRLAIIEYIPLLASQLG-VGFFDDKL----GALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 410 --~~~vR~~~~~~l~~i~~~~~-~~~~~~~l----~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
...||.+++.++..+.-.+. ++.+.++. +-.+++-..|+....|+.|+.++.++...
T Consensus 819 DVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 819 DVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred cHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 35699999999998876654 44443333 33344555577778899999999988865
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.3e-12 Score=123.27 Aligned_cols=331 Identities=15% Similarity=0.164 Sum_probs=242.9
Q ss_pred cchhHHHHHHHHHHHHHHhhcC--h--hhhhhhHHHHHHHHhc-CCCcchhhhHhhhhHhhcCCCChH----HHHHHHHH
Q 008806 97 VEETCVRDKAVESLCRIGSQMR--E--SDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI----LKTELRSI 167 (553)
Q Consensus 97 ~~~~~vR~~a~~~l~~l~~~~~--~--~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~ 167 (553)
..+...+..+...+..+...-. + +.+..-++|.+..+++ ++++..+..++-++..++..-+.. .....+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 3344446667777777665332 2 2234457788877765 677999999999999999876655 33557899
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhhCc--hh-hhhhHHHHHHHhhhCCCh-hHHHHHHHHHHHhhccCCcc---hhhh
Q 008806 168 YTQLCQDDMPMVRRSAASNLGKFAATVEP--AH-LKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEPQ---DCVA 240 (553)
Q Consensus 168 l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~~---~~~~ 240 (553)
|.+|+.+++..|++.++.+||+++...+. +. +...+++.+..++...+. .....+..++..++..-.+. ....
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 99999999999999999999999864432 11 222344555555555544 67778899999999876432 3456
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---
Q 008806 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--- 314 (553)
Q Consensus 241 ~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--- 314 (553)
.++|.+..++.+.+..|..-+++++..+...-.+.. ....+.|.++.++...+..++..|+.+++.+...-+.+
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~ 316 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV 316 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence 799999999999999999999999999886533221 12358999999999999999999999999876533222
Q ss_pred HHHHhHHHHHHHhcc-CCcHHHHHHHHHHHHhhhhhhCHH---hHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhc
Q 008806 315 LAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (553)
Q Consensus 315 ~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~ 390 (553)
.+....+|.+..++. ++..++|..+++.++.|...-... .....++|.+..+++..+...|..|+.+++.+...-.
T Consensus 317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 317 VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 123456788888887 667779999999999998632211 1245788999999999999999999999999877544
Q ss_pred hhhH----HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhh
Q 008806 391 IDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (553)
Q Consensus 391 ~~~~----~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~ 427 (553)
.+.+ ...+++.+..++.-.+.++-..++.++..+.+.
T Consensus 397 ~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 397 PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 4432 245677777777667777777788888877654
No 37
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=7.1e-11 Score=124.49 Aligned_cols=433 Identities=18% Similarity=0.159 Sum_probs=276.0
Q ss_pred HHHHHhcCccHHHHHHHhhhHHHHHHhhCh--HH--Hhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCC-------
Q 008806 13 VLIDELKNDDIQLRLNSIRRLSTIARALGE--ER--TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG------- 80 (553)
Q Consensus 13 ~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~--~~--~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~------- 80 (553)
.+...+.|.++..|..++-=|-.+.+++|. +. ..+++...+.. +.|.++-++..+++-++-+-+.-+.
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV 901 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLV 901 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHH
Confidence 344566699999998875544444466662 21 23466666666 6676666777777666532211000
Q ss_pred -------------------c----------------c--hhhcchh------------HHHhhhcc-chhHHHHHHHHHH
Q 008806 81 -------------------V----------------E--HAHVLLP------------PLETLCTV-EETCVRDKAVESL 110 (553)
Q Consensus 81 -------------------~----------------~--~~~~l~~------------~l~~l~~~-~~~~vR~~a~~~l 110 (553)
+ . ...+++. -+.++.++ ....-|..|.-++
T Consensus 902 ~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf 981 (1702)
T KOG0915|consen 902 DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGF 981 (1702)
T ss_pred HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhch
Confidence 0 0 0001111 11222222 2334466677777
Q ss_pred HHHHhhcCh--hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCC---ChHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008806 111 CRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA---PDILKTELRSIYTQLCQDDMPMVRRSAAS 185 (553)
Q Consensus 111 ~~l~~~~~~--~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~ 185 (553)
+.+++.-.. +.....++|-+.++--|++..++.+-..+.+.+..-- .+++..+++.-+..-+.+..|+||++++-
T Consensus 982 ~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReascl 1061 (1702)
T KOG0915|consen 982 GAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCL 1061 (1702)
T ss_pred HHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 777765433 2334457888888888999999999888888887642 33477888888888899999999999999
Q ss_pred HHHHHHhhhCchhhhhh---HHHHHHHhhhCCChhHHHHHHHHHHHhhccC---C-------cchhhhchHHHHHH-hcC
Q 008806 186 NLGKFAATVEPAHLKTD---IMSIFEDLTQDDQDSVRLLAVEGCAALGKLL---E-------PQDCVAHILPVIVN-FSQ 251 (553)
Q Consensus 186 ~l~~l~~~~~~~~~~~~---l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~-------~~~~~~~ll~~l~~-l~~ 251 (553)
+|..+...-+.+.+.+. ++..+.+...|-.+.||.+|-.+...+++.+ . .....+.++|++.. -.-
T Consensus 1062 AL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim 1141 (1702)
T KOG0915|consen 1062 ALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM 1141 (1702)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc
Confidence 99999987666555544 3444455566778899999977666665542 1 12345668888765 233
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCcHHH-------------------HHHH------HHHH
Q 008806 252 DKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEV-------------------RIAA------AGKV 304 (553)
Q Consensus 252 d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~llp~l~~ll~d~~~~v-------------------r~~a------~~~l 304 (553)
.+-..||+....++..+++..|.... ...++|.+.+....-++.| |..+ .+++
T Consensus 1142 s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi 1221 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETI 1221 (1702)
T ss_pred cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHH
Confidence 66678999999999999998876542 2468888887765544332 2222 2223
Q ss_pred HHHHHhhCHHHHHHhHHHHHHHhccCC-cHHHHHHHHHHHHhhhhhhCHHhH--HHhHHHHHHHhhCCCChHHHHHHHHH
Q 008806 305 TKFCRILNPELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISK 381 (553)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~ 381 (553)
..+..+++. ...+.++|.+.++.... .-..|.+++..+..+...+|.+.. ...++..++..++|.+..+|.+.+.+
T Consensus 1222 ~~ci~~iD~-~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsA 1300 (1702)
T KOG0915|consen 1222 NKCINYIDI-SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASA 1300 (1702)
T ss_pred HHHHHhhhH-HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHH
Confidence 333333332 34678888888887643 456777888888888888887643 56788889999999999999999999
Q ss_pred HHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh--hhhHHHHHHHHHHHccC
Q 008806 382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQD 447 (553)
Q Consensus 382 l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~D 447 (553)
.+.+...-.++..+..+-..+-.+..+.+.. +..++..+..|+..... +.+.+.++|.++-...+
T Consensus 1301 mG~L~k~Ss~dq~qKLie~~l~~~l~k~es~-~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1301 MGYLAKFSSPDQMQKLIETLLADLLGKDESL-KSISCATISNIANYSQEMLKNYASAILPLIFLAMHE 1367 (1702)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhccCCCc-cchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhH
Confidence 9999998777766444444444554443221 13344444444433221 12345566666544443
No 38
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.7e-10 Score=114.00 Aligned_cols=449 Identities=16% Similarity=0.115 Sum_probs=275.5
Q ss_pred HHHHHHHhcCccHHHHHHHhhhH-HHHHHhhChHHHhhhhhhh-hhhcCCCcHHHHHHHHHHhhccccccCCcchhhcch
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRL-STIARALGEERTRKELIPF-LSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l-~~i~~~~~~~~~~~~ll~~-l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 88 (553)
-..|..-|.|........|++.+ +.+|+.. + ...+.|. +++....+.+|++.+...|-+.++.-++ ..-.=+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~---d-vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd--LALLSI 110 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGK---D-VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD--LALLSI 110 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCC---c-HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC--ceeeeH
Confidence 34566777877777777787655 4444422 2 3345554 4458888999999999888887764332 111223
Q ss_pred hHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHH
Q 008806 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (553)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l 168 (553)
..++.-++|+++.+|..|+.++..+-- ..+.+.++-.++++..|.++.||..|+.++..++.. +++..+++...+
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~k~qL~e~I 185 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQKDQLEEVI 185 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-ChhhHHHHHHHH
Confidence 457888899999999999988866532 234455666778889999999999999999999875 455566999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhcc-CC-c-----------
Q 008806 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LE-P----------- 235 (553)
Q Consensus 169 ~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~-~----------- 235 (553)
..|+.|.++.|--+++.++..+|..-= +....=.-.+.+++.|-++.=+...+..|...++. +. +
T Consensus 186 ~~LLaD~splVvgsAv~AF~evCPerl--dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~ 263 (968)
T KOG1060|consen 186 KKLLADRSPLVVGSAVMAFEEVCPERL--DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG 263 (968)
T ss_pred HHHhcCCCCcchhHHHHHHHHhchhHH--HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc
Confidence 999999999999999998888774210 01111111223334454444445555555555543 11 0
Q ss_pred ------------------chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHH
Q 008806 236 ------------------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVR 297 (553)
Q Consensus 236 ------------------~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr 297 (553)
+.-...++.....++...++.|-.++++.+..++.... ...+...+++++..+ .+++
T Consensus 264 ~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~----~~~i~kaLvrLLrs~-~~vq 338 (968)
T KOG1060|consen 264 RSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ----VTKIAKALVRLLRSN-REVQ 338 (968)
T ss_pred ccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH----HHHHHHHHHHHHhcC-Ccch
Confidence 00112255555667788888899999998888775421 245677777777654 4677
Q ss_pred HHHHHHHHHHHHhhC----------------H----------------HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHh
Q 008806 298 IAAAGKVTKFCRILN----------------P----------------ELAIQHILPCVKELSSDSSQHVRSALASVIMG 345 (553)
Q Consensus 298 ~~a~~~l~~~~~~~~----------------~----------------~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~ 345 (553)
...++++..++..-. + +.-...+++-+.....+++..+-..++++++.
T Consensus 339 yvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGr 418 (968)
T KOG1060|consen 339 YVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGR 418 (968)
T ss_pred hhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 777777776654211 0 01123344445555555555666666777777
Q ss_pred hhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCC-CcHHHHHHHHHHHHH
Q 008806 346 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLL 424 (553)
Q Consensus 346 l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~~~~~l~~i 424 (553)
.+...+.- .+..+..+..++...+..|-..++..+..+++.-..+. ..++..|..++..- -..-|...+..+|..
T Consensus 419 CA~~~~sv--~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~ARA~IiWLige~ 494 (968)
T KOG1060|consen 419 CASRIGSV--TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH--LEILFQLARLLDTILVPAARAGIIWLIGEY 494 (968)
T ss_pred HHHhhCch--hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhhceeeeeehhh
Confidence 66655542 34566667777776667777777777776665432222 23444444444222 234455555555555
Q ss_pred HhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhh
Q 008806 425 ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLD 485 (553)
Q Consensus 425 ~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~ 485 (553)
..... .+.+.++..+.+-+.|+..+||.+++..-.++.-.-..+ .+.+.....++..
T Consensus 495 ~e~vp--ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~--~kll~~Yv~~L~~ 551 (968)
T KOG1060|consen 495 CEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ--TKLLVQYVFELAR 551 (968)
T ss_pred hhhcc--hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh--HHHHHHHHHHHhc
Confidence 43321 122344555556678888889888887766665432222 2345555555443
No 39
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3.8e-12 Score=114.71 Aligned_cols=339 Identities=18% Similarity=0.143 Sum_probs=236.8
Q ss_pred hhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcchhhcc---hhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhh
Q 008806 46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL---LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL 122 (553)
Q Consensus 46 ~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~ 122 (553)
++.+-|.+.-+++.++.++++++..+|+++-..+.......+ -+++.++.+|. .++|..|..++..++.. +....
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk~ 161 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNKV 161 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccchh
Confidence 344555555578888999999999999987655544333333 34666666554 46788899999999876 32211
Q ss_pred ---hh-hHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 008806 123 ---VD-WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (553)
Q Consensus 123 ---~~-~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~ 193 (553)
.. -+.|+. ++.+.++..+|..+..++..+... .+.+ .--+|.+..++...++.||..+..+++.++-.
T Consensus 162 kiA~sGaL~plt-rLakskdirvqrnatgaLlnmThs--~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 162 KIARSGALEPLT-RLAKSKDIRVQRNATGALLNMTHS--RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhccchhhhH-hhcccchhhHHHHHHHHHHHhhhh--hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh
Confidence 11 144444 588888889999888877766532 2222 23468999999999999999999999998753
Q ss_pred hCch----hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc--chhhhchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008806 194 VEPA----HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267 (553)
Q Consensus 194 ~~~~----~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~ 267 (553)
-... ...+.++|.+..+..|.++.++..|..++..++..... +.....-+|.+.++++++.-..-.+...++.+
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 2211 12246889999999999999999999999999864322 22334468889999888765555555566666
Q ss_pred HHHHhCCCc--cccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCH---HHHHHhHHHHHHHhccCCcHHHHHHHHH
Q 008806 268 LCEAVGPEP--TRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALAS 341 (553)
Q Consensus 268 l~~~~~~~~--~~~~llp~l~~ll~d~~-~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~ 341 (553)
++-.-+.+. ....++..+++++.-.+ .+++.+|..+|-.+...... .-+....+|.+..++.|..-.+|.....
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 654433332 22346777888886544 45899999988887663321 1223456889999999998888877776
Q ss_pred HHHhhhh--hhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhh
Q 008806 342 VIMGMAP--LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (553)
Q Consensus 342 ~l~~l~~--~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 389 (553)
++..++- .....+...-++|.++.++.+.+.+||-.++.+|..+++..
T Consensus 399 c~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 399 CIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 6666653 33333345577899999999999999999999999988743
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.46 E-value=3.3e-10 Score=114.62 Aligned_cols=429 Identities=16% Similarity=0.127 Sum_probs=260.8
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhC-hHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhc
Q 008806 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALG-EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (553)
Q Consensus 9 ~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~-~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 86 (553)
+.+..++..|...+ .|..+...+.......+ .+.... +.+-. +++.+.+.-..++.+|..+............
T Consensus 3 ~~~~~~l~~l~~~~--~~~~~L~~l~~~~~~~~~l~~~~~---~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~ 77 (503)
T PF10508_consen 3 EWINELLEELSSKA--ERLEALPELKTELSSSPFLERLPE---PVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQ 77 (503)
T ss_pred hHHHHHHHHHhccc--chHHHHHHHHHHHhhhhHHHhchH---HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 34677777787763 35566655554322221 111111 11333 4555566557777888888776555455667
Q ss_pred chhHHHhhhccchhHHHHHHHHHHHHHHhhcCh--h-hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH---H
Q 008806 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--S-DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---L 160 (553)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~ 160 (553)
..+.+...+.++++.||..++..++.+...-.. + .....+++.+..+..+++..+...|+.++..++.+-..- .
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh
Confidence 778888888999999999999998888765322 1 123458999999999999999999999999998753221 1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch---hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcch
Q 008806 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD 237 (553)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (553)
...+...+.+++..++..+|..+...+..+++.-+.- .....+++.+...+.++|.-++..+++.+..++..-..-.
T Consensus 158 ~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~ 237 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQ 237 (503)
T ss_pred CcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHH
Confidence 2233788888888778899999999888887654321 1123478888888888888999999999999998311111
Q ss_pred --hhhchHHHHHHhcC----CC-CHHHH-HHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 008806 238 --CVAHILPVIVNFSQ----DK-SWRVR-YMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307 (553)
Q Consensus 238 --~~~~ll~~l~~l~~----d~-~~~vR-~~~~~~l~~l~~~~~~~~--~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~ 307 (553)
....+++.+...+. |+ ...+. -+..+.++.++..-+.+. ..+.++..+.+.+.+.++..+..|+.+++.+
T Consensus 238 yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i 317 (503)
T PF10508_consen 238 YLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI 317 (503)
T ss_pred HHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 12235555555443 43 11211 233455666665411111 1134566666777888999999999999998
Q ss_pred HHhhCHHHH--------HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHH
Q 008806 308 CRILNPELA--------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII 379 (553)
Q Consensus 308 ~~~~~~~~~--------~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~ 379 (553)
+........ ...++..+..........+|..++.++..+........ .+.+.
T Consensus 318 gst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~-~~~i~------------------- 377 (503)
T PF10508_consen 318 GSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQ-DNDIL------------------- 377 (503)
T ss_pred hCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCc-hHHHH-------------------
Confidence 865422211 12233333344444555666666666666643222110 11111
Q ss_pred HHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhh-hChhhhH--HHHHHHHHHHccCCchHHHHHH
Q 008806 380 SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LGVGFFD--DKLGALCMQWLQDKVYSIRDAA 456 (553)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~-~~~~~~~--~~l~~~l~~~l~D~~~~VR~~a 456 (553)
.......+.++...... .+..+++.|.+++|.++...+..++.. .|...+. +.++.+++.--.+++.+.++.=
T Consensus 378 ~~~~~w~~~~~~~~~~~----~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K 453 (503)
T PF10508_consen 378 SITESWYESLSGSPLSN----LLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAK 453 (503)
T ss_pred HHHHHHHHHhcCCchHH----HHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHH
Confidence 22222333333332211 567777888899999999999888764 2322221 2345555444555666666666
Q ss_pred HHHHHHHHHH
Q 008806 457 ANNLKRLAEE 466 (553)
Q Consensus 457 ~~~l~~l~~~ 466 (553)
..++..+.+.
T Consensus 454 ~~ii~~l~~~ 463 (503)
T PF10508_consen 454 YDIIKALAKS 463 (503)
T ss_pred HHHHHHHHhc
Confidence 6666666643
No 41
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2e-11 Score=110.08 Aligned_cols=339 Identities=13% Similarity=0.127 Sum_probs=237.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhh---hhhhhhhcCCCcHHHHHHHHHHhhccccccCCc---chh
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKE---LIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV---EHA 84 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~---ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~ 84 (553)
+..++..++|.|+.....|...++.++-.++....... |-+++.++..+..++|+.+..|+..++..-... -..
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~s 166 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARS 166 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhc
Confidence 44556678899999888899999988776665443333 334777777788899999999999888752211 122
Q ss_pred hcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhh--hhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCCh----
Q 008806 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---- 158 (553)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---- 158 (553)
.-+.|+.. +.+.++..+|..+..+|..+-..-.... +-.--+|++.++.++.+..+|+.++..++.++-.-..
T Consensus 167 GaL~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 167 GALEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred cchhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 34555554 8888899999988888877754332211 1122579999999999999999999999988642211
Q ss_pred -HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhC--chhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc
Q 008806 159 -ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE--PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (553)
Q Consensus 159 -~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (553)
+....+++.+.++..|+++.|+-.+..+|+.++..-. .+.+...-+|.+.+++.++.-..-.+.+.++..++-.-..
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN 325 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN 325 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence 1334589999999999999999999999999986422 1233344679999999888776666677777666544222
Q ss_pred c-hhhh--chHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 008806 236 Q-DCVA--HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (553)
Q Consensus 236 ~-~~~~--~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~ 309 (553)
+ ...+ .+-|.+.-+--..+...+..+..+|..++...... ......+|.+..++.|...++|.....++..+.-
T Consensus 326 e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 326 EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 2 1211 13444444434445568888888898888643221 2223578999999999988898877777776654
Q ss_pred hh-CHHHHH-HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhh
Q 008806 310 IL-NPELAI-QHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (553)
Q Consensus 310 ~~-~~~~~~-~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~ 350 (553)
.- ..+.+. ..++|.+..+..+.+..||-.++.++..++...
T Consensus 406 ~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 406 NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 22 223333 357888999999999999999999999988643
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.39 E-value=1.1e-09 Score=111.00 Aligned_cols=338 Identities=16% Similarity=0.163 Sum_probs=229.7
Q ss_pred HHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhH
Q 008806 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDI 203 (553)
Q Consensus 128 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l 203 (553)
+.+..++++.+.+.-..+++++..+....... ...++.+.+...+.++++.||..+++.++.++..-+. -.....+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 33555566555555567778888877766555 5788899999999999999999999998887754321 0123567
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccc
Q 008806 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTR 278 (553)
Q Consensus 204 ~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~ 278 (553)
++.+...+.|++.+|...|+.++..++..-..- .+...+.+.+..++...+..+|..+.+.+..++..-..- ...
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~ 200 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN 200 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 888888999999999999999999998753221 112334777778777767788888888888876542211 112
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHHHH-HHhHHHHHHHhcc----CC-cHH-HHHHHHHHHHhhhhhh
Q 008806 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPELA-IQHILPCVKELSS----DS-SQH-VRSALASVIMGMAPLL 350 (553)
Q Consensus 279 ~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~-~~~~~-~~~l~~~l~~l~~----d~-~~~-vr~~~~~~l~~l~~~~ 350 (553)
..+++.+++.++++|.-++.++++.+..++..- |.+.. ...+++.+...+. |+ ... .--+.+..++.++..
T Consensus 201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~- 279 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV- 279 (503)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-
Confidence 358999999999999999999999999998732 11211 1235566655553 33 111 112334555666654
Q ss_pred CHHhH---HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh-H-H------hhHHHHHHHhhcCCCcHHHHHHHH
Q 008806 351 GKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-L-S------QSLLPAIVELAEDRHWRVRLAIIE 419 (553)
Q Consensus 351 ~~~~~---~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~-~-~------~~ll~~l~~~~~d~~~~vR~~~~~ 419 (553)
.+..+ .+.++..+..++...++..+..|+.++|.++....... + . +.++..+.....+....+|..++.
T Consensus 280 ~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~ 359 (503)
T PF10508_consen 280 SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALH 359 (503)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 22222 35566667777788899999999999999987653322 2 1 234444455556667789999999
Q ss_pred HHHHHHhhhCh---hh---hHHHH--------HH-HHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 420 YIPLLASQLGV---GF---FDDKL--------GA-LCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 420 ~l~~i~~~~~~---~~---~~~~l--------~~-~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
+++.+...... +. ....+ .. .++.+++.|-+++|.++.+.+..++..
T Consensus 360 al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 360 ALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 99999643322 11 11111 11 667788899999999999999988865
No 43
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.1e-09 Score=106.48 Aligned_cols=396 Identities=18% Similarity=0.126 Sum_probs=234.5
Q ss_pred cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHH-HhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHH-HHHHHH
Q 008806 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL-ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI-PLVKRL 133 (553)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l-~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l-~~l~~~ 133 (553)
..|.++..|...+..++.+.... ...-...+.... ..+...-+..|-..-...+..++...++......++ ..-...
T Consensus 88 ~fDs~~s~~~K~~~l~~~l~~~~-~~~s~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~ 166 (823)
T KOG2259|consen 88 IFDSDESSRKKLAILLGILEADF-ENGSTDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVR 166 (823)
T ss_pred hccccchhhhHHHHHhhHhhhhh-ccCchhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHh
Confidence 45667777777776666661111 111112222221 122233345555555555555554444333222111 111223
Q ss_pred hcCCCcchhhhHhhhhHhhcCCCChH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhh
Q 008806 134 AAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211 (553)
Q Consensus 134 ~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~ 211 (553)
.++.+...|..+......+...-++- ..+.+...+..++.|.++.||..|+++|-.+.+.+ .....+.....+.+
T Consensus 167 ~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~l 243 (823)
T KOG2259|consen 167 SSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKHL 243 (823)
T ss_pred hhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHHh
Confidence 34445566666665554443322221 34556666888999999999999999998888732 23345566677789
Q ss_pred hCCChhHHHHHHHHHHHhhccCC--c------chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH-
Q 008806 212 QDDQDSVRLLAVEGCAALGKLLE--P------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV- 282 (553)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~--~------~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ll- 282 (553)
+|.+..||.+|++.+...+...+ . ....+..+.-++....|.+|.||..+++.||.+-.. .++++
T Consensus 244 sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v------See~i~ 317 (823)
T KOG2259|consen 244 SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV------SEEIIQ 317 (823)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh------HHHHHH
Confidence 99999999999999888887762 1 123455777888899999999999999999987643 11221
Q ss_pred HHHHH-hcCC-CcHHH---HHHHHHHHHHHHH------hhCHHHH---HHhH-----HHHHHHhccCCcHHHHHHHHHHH
Q 008806 283 PAYVR-LLRD-NEAEV---RIAAAGKVTKFCR------ILNPELA---IQHI-----LPCVKELSSDSSQHVRSALASVI 343 (553)
Q Consensus 283 p~l~~-ll~d-~~~~v---r~~a~~~l~~~~~------~~~~~~~---~~~l-----~~~l~~l~~d~~~~vr~~~~~~l 343 (553)
..+-+ ++.+ ..+.. |-....+=+.+.. ..+.+.. ...+ ...+...++|....||.++..++
T Consensus 318 QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl 397 (823)
T KOG2259|consen 318 QTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASL 397 (823)
T ss_pred HHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHH
Confidence 12211 1111 00111 0111111111111 0111110 1122 23455667889999999999999
Q ss_pred HhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 008806 344 MGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (553)
Q Consensus 344 ~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~ 423 (553)
+.++..-+ .+....+..+..+++|+...||..|+.+|..+...+. +++..++.+...+.|.+..+|.+.-..+..
T Consensus 398 ~~La~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 398 CSLATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99985322 2345568889999999999999999999999988743 446778889999999999999988777754
Q ss_pred HHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh
Q 008806 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 424 i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
. ...+.+.+. -.+..+++.+. .-+.=|.....|++.|.++.+.
T Consensus 473 ~-~~~d~~~i~-m~v~~lL~~L~-kyPqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 473 A-RVSDLECID-MCVAHLLKNLG-KYPQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred c-CCCcHHHHH-HHHHHHHHHhh-hCCCCcHHHHHHHHHHhccChh
Confidence 2 222222222 22233333322 1122255567788888877654
No 44
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.27 E-value=3.6e-09 Score=102.70 Aligned_cols=275 Identities=24% Similarity=0.221 Sum_probs=180.6
Q ss_pred HHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHH
Q 008806 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS 205 (553)
Q Consensus 126 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p 205 (553)
..+.+.+...++++.+|..+...++.+- ....++.+..++.|.++.||..++.+||.+.. +...|
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~-------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a~~ 108 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELG-------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEAVP 108 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhc-------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhHHH
Confidence 3455566666667777777776654443 24567777788888888888888887775442 23334
Q ss_pred HHHHhhh-CCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCC------------CHHHHHHHHHHHHHHHHHh
Q 008806 206 IFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK------------SWRVRYMVANQLYELCEAV 272 (553)
Q Consensus 206 ~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~------------~~~vR~~~~~~l~~l~~~~ 272 (553)
.+...++ |++..||..+..+++.+... . .+..+...++|. .+.+|.+++..++.+.
T Consensus 109 ~li~~l~~d~~~~vR~~aa~aL~~~~~~-------~-a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~--- 177 (335)
T COG1413 109 PLVELLENDENEGVRAAAARALGKLGDE-------R-ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG--- 177 (335)
T ss_pred HHHHHHHcCCcHhHHHHHHHHHHhcCch-------h-hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC---
Confidence 4444444 78888888888888776532 1 122223333332 2467888888877764
Q ss_pred CCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH
Q 008806 273 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 352 (553)
Q Consensus 273 ~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (553)
.+...+.+...+.|.+..||.++..+++.+.... ..+.+.+....+|.+|.+|..++..++.+..
T Consensus 178 -----~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~---- 242 (335)
T COG1413 178 -----DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD---- 242 (335)
T ss_pred -----ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc----
Confidence 3456788888888888899999999888765532 3455677788889999999999888887762
Q ss_pred HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh
Q 008806 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (553)
Q Consensus 353 ~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~ 432 (553)
....+.+...+.+.+..++..+...++..-. ..-.+.+.....|.++.+|..+...++.+....
T Consensus 243 ----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~---- 306 (335)
T COG1413 243 ----EEAVDALAKALEDEDVILALLAAAALGALDL--------AEAALPLLLLLIDEANAVRLEAALALGQIGQEK---- 306 (335)
T ss_pred ----chhHHHHHHHHhccchHHHHHHHHHhcccCc--------hhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc----
Confidence 2345667777778888887777666651111 222334555667888888888888877766322
Q ss_pred hHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 008806 433 FDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (553)
Q Consensus 433 ~~~~l~~~l~~~l~D~~~~VR~~a~~~l~ 461 (553)
..........+....+|..+.....
T Consensus 307 ----~~~a~~~~~~~~~~~~~~~~~~~~~ 331 (335)
T COG1413 307 ----AVAALLLALEDGDADVRKAALILLE 331 (335)
T ss_pred ----hHHHHHHHhcCCchhhHHHHHHHHH
Confidence 2233345566777778777766554
No 45
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1e-08 Score=102.31 Aligned_cols=438 Identities=13% Similarity=0.136 Sum_probs=270.4
Q ss_pred CcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhh
Q 008806 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85 (553)
Q Consensus 7 ~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 85 (553)
....+..+...+.+.-+..|..|++.+-+- ..+| .....+.|-+.. +...+-+..+.+...+.+.+..-+ ....
T Consensus 11 ~k~ei~elks~l~s~~~~kr~~a~kkvIa~-Mt~G--~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P--~~a~ 85 (734)
T KOG1061|consen 11 KKGEIPELKSQLNSQSKEKRKDAVKKVIAY-MTVG--KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKP--DLAI 85 (734)
T ss_pred hhhhchHHHHHhhhhhhhhHHHHHHHHHhc-CccC--cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCc--hHHH
Confidence 344567777788777777777776543221 2233 223455555555 555567888887777777665322 2233
Q ss_pred cchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-HHHHH
Q 008806 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTEL 164 (553)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l 164 (553)
...+.+..-..|+++.+|.-|+..++.+ .-+.+..++..-+.+..+|+++.+|..++.....+...-... ....+
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl 161 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGL 161 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccch
Confidence 3455566667789999999998777554 233455667777788899999999999998888776654333 44668
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchh---hhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcch-hhh
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVA 240 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~ 240 (553)
++.+..++.|.++.|-..|..++..+.+.-++.. +...++..+.+.+++-+..-+ +..+..++...+++. -..
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~~ea~ 238 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDSREAE 238 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCchhHH
Confidence 8899999999999999999999999987654311 222333444444444333333 344444555544433 122
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-----
Q 008806 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----- 313 (553)
Q Consensus 241 ~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----- 313 (553)
.++..+...+...+..|-.++.+.+-.....+.. +.....+.|.+..++.... ++...++.++..+....+.
T Consensus 239 ~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~ 317 (734)
T KOG1061|consen 239 DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVE 317 (734)
T ss_pred HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhH
Confidence 3444444445555555555555555554444332 1111233444444443332 5555555555544332110
Q ss_pred ---------------------------HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHh
Q 008806 314 ---------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 366 (553)
Q Consensus 314 ---------------------------~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~ 366 (553)
+.....+++-+.....+.+...-..++++++.++....+. ...++.++.+
T Consensus 318 ~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLel 394 (734)
T KOG1061|consen 318 IKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLEL 394 (734)
T ss_pred hHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHH
Confidence 1123446666666677777766677788888888665544 5678888888
Q ss_pred hCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcC-CCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHc
Q 008806 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (553)
Q Consensus 367 l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l 445 (553)
++-....|-..++..+..+...+.... +.+.+.+...... .++..|.+.+..+|.-+..++.. .+++..+++..
T Consensus 395 l~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~ 469 (734)
T KOG1061|consen 395 LETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENF 469 (734)
T ss_pred HhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhc
Confidence 876666666666677777776654432 5556655544433 36778999999998888766554 45677777888
Q ss_pred cCCchHHHHHHHHHHHHHHH
Q 008806 446 QDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 446 ~D~~~~VR~~a~~~l~~l~~ 465 (553)
.|+..+|+.....+.-++.-
T Consensus 470 ~dE~~~Vql~LLta~ik~Fl 489 (734)
T KOG1061|consen 470 KDETAEVQLELLTAAIKLFL 489 (734)
T ss_pred ccchHHHHHHHHHHHHHHHh
Confidence 89888888777666555443
No 46
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.3e-07 Score=94.53 Aligned_cols=398 Identities=16% Similarity=0.138 Sum_probs=231.8
Q ss_pred cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc
Q 008806 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA 135 (553)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~ 135 (553)
+++++.-|...|..++++++. ++....+.|.+..+++..++.+|+.|+-|...+....+ ...+.+++-..+++.
T Consensus 116 L~s~nq~vVglAL~alg~i~s----~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P--~l~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICS----PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP--DLVEHFVIAFRKLLC 189 (866)
T ss_pred ccCCCeeehHHHHHHhhccCC----HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc--hHHHHhhHHHHHHHh
Confidence 666777777777777877654 45667899999999999999999999999999988765 345667888888999
Q ss_pred CCCcchhhhHhhhhHhhcCCCChH------HHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHHHhhhCchh
Q 008806 136 GEWFTARVSACGLFHIAYPSAPDI------LKTELRSIYTQLCQD-----------DMPMVRRSAASNLGKFAATVEPAH 198 (553)
Q Consensus 136 ~~~~~~r~~~~~~l~~l~~~~~~~------~~~~l~~~l~~ll~d-----------~~~~Vr~~a~~~l~~l~~~~~~~~ 198 (553)
+++..|-.++..++..++..-++. ....++.++.++... ++|..+...++.|+-+...-. +
T Consensus 190 ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--d 267 (866)
T KOG1062|consen 190 EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--D 267 (866)
T ss_pred hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--c
Confidence 999999999988888887764332 334455555555432 256666666666665554321 1
Q ss_pred hhhhHHHHHHHhhh--CCChhHHHHHH-HHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Q 008806 199 LKTDIMSIFEDLTQ--DDQDSVRLLAV-EGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275 (553)
Q Consensus 199 ~~~~l~p~l~~~~~--d~~~~vr~~a~-~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~ 275 (553)
..+..-.++-+.+. |.+.++=.+.+ ++...+....+.......-+..+-+.+...+..+|+.+...|..+...-+.
T Consensus 268 aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~- 346 (866)
T KOG1062|consen 268 ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPT- 346 (866)
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcH-
Confidence 11111122222221 11111111111 111122211122222222233333434444445566655555555432110
Q ss_pred ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH
Q 008806 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 355 (553)
Q Consensus 276 ~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (553)
..+.=-..++++++|+|..+|+.|++-.-.+...-. ...++..+..++...+...|..++.-+..+++.+.++
T Consensus 347 -avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~-- 419 (866)
T KOG1062|consen 347 -AVQRHRSTILECLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPD-- 419 (866)
T ss_pred -HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc--
Confidence 011224567789999999999999887666554322 2445555666666678888988888888888888775
Q ss_pred HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhh-chhh--HHhhHHHHHHHh-h-cCCCcHHHHHHHHHHHHHHhhh-C
Q 008806 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDL--LSQSLLPAIVEL-A-EDRHWRVRLAIIEYIPLLASQL-G 429 (553)
Q Consensus 356 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~-~~~~--~~~~ll~~l~~~-~-~d~~~~vR~~~~~~l~~i~~~~-~ 429 (553)
..+.+..+.+.+...-.-|+..+..++-.++..- +... ....+...+... . .-+....-+.+.++||+-+..+ .
T Consensus 420 k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~ 499 (866)
T KOG1062|consen 420 KRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLD 499 (866)
T ss_pred chhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhc
Confidence 4566777777776655667777777666665443 2211 001112222111 1 1123344566778887766322 1
Q ss_pred h-------hhhHHHHHHHHHHHcc--CCchHHHHHHHHHHHHHHHHhCh
Q 008806 430 V-------GFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 430 ~-------~~~~~~l~~~l~~~l~--D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
. ..-.++++..+.+.+. ..+..++..|+.++-++...+..
T Consensus 500 ~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s 548 (866)
T KOG1062|consen 500 GANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS 548 (866)
T ss_pred CccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc
Confidence 1 1112334444444332 12367899999999999887764
No 47
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.23 E-value=3.7e-08 Score=94.58 Aligned_cols=293 Identities=13% Similarity=0.093 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhh
Q 008806 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 239 (553)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 239 (553)
...++.|.+..-++|+-..|.-.+++++..++...-.++.....+..+..+++......|-+|+..+..++...+...
T Consensus 261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-- 338 (898)
T COG5240 261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-- 338 (898)
T ss_pred HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--
Confidence 456677777777788778888888888887765432234445566667777888888888888888888887665532
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 319 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (553)
...-+-+..+++|.+..+-..++.+ +.+. |.+...+.++..+...+.|-...-+..++.++..++-.++.++. .
T Consensus 339 ~vcN~evEsLIsd~Nr~IstyAITt---LLKT-Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~--s 412 (898)
T COG5240 339 SVCNKEVESLISDENRTISTYAITT---LLKT-GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL--S 412 (898)
T ss_pred eecChhHHHHhhcccccchHHHHHH---HHHc-CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH--H
Confidence 2234556667777775544444333 3332 44444455666666666665555666677777777766765542 2
Q ss_pred HHHHHH-HhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhH
Q 008806 320 ILPCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (553)
Q Consensus 320 l~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~l 398 (553)
++..+. .+++......+..+..++..+.+..+.. .+..+..+...+.|.... +-+++.|+-+++......-....
T Consensus 413 ~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~y 488 (898)
T COG5240 413 YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKY 488 (898)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchH
Confidence 333332 2334556677777777777776554332 334455555555554321 11222233222211100000111
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 399 l~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
+-.+...+-=.|.-+|.+|+.+++.++-........+.+...+-++++|.+.+||..|.-++..+-
T Consensus 489 vrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 489 VRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 122222222246789999999999999777666666677778888999999999999988887665
No 48
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.8e-09 Score=105.38 Aligned_cols=406 Identities=14% Similarity=0.123 Sum_probs=240.8
Q ss_pred CCcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchh
Q 008806 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (553)
Q Consensus 6 ~~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 84 (553)
...-.++.++..-.+++|..|..|+++++.+. .+...+.+..-+.. ..|+++.+|+.++.+..++-..-..-...
T Consensus 83 ~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~ 158 (734)
T KOG1061|consen 83 LAILAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED 158 (734)
T ss_pred HHHhhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc
Confidence 34556778888888999999999998877552 23334444444444 78899999999998888776544333344
Q ss_pred hcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH--HHH
Q 008806 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKT 162 (553)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~ 162 (553)
.-+++.+..+..|+++.|-..|..++..+.+.-+.........+.+..+...-+...-..-+.++..+.....++ ...
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~ 238 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE 238 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH
Confidence 457777888888999999889999998888765431111111122222211111111112233444444444333 344
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc--hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc-----
Q 008806 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----- 235 (553)
Q Consensus 163 ~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----- 235 (553)
+++..+...+++.++.|--.+.+.+-.+.+.... +.+...+-|.+..++..+. ++...++..+.-+....+.
T Consensus 239 ~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~ 317 (734)
T KOG1061|consen 239 DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVE 317 (734)
T ss_pred HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhH
Confidence 5566666666666666666666666555555443 1222223333333332222 4444444433333322211
Q ss_pred ---------------------------chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh
Q 008806 236 ---------------------------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 288 (553)
Q Consensus 236 ---------------------------~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~l 288 (553)
+...++++.-+.....+.+...-+.+++++|.++...... +..++.++++
T Consensus 318 ~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLel 394 (734)
T KOG1061|consen 318 IKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLEL 394 (734)
T ss_pred hHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHH
Confidence 1122335555666667777777777888899888665443 5688888888
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccC-CcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh
Q 008806 289 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367 (553)
Q Consensus 289 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l 367 (553)
++-....|-..+...+..+....+.. .+.+++.+...... .++..|.+.++.++..+..+... ..++..+.+..
T Consensus 395 l~~~~~yvvqE~~vvi~dilRkyP~~--~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~ 469 (734)
T KOG1061|consen 395 LETKVDYVVQEAIVVIRDILRKYPNK--YESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENF 469 (734)
T ss_pred HhhcccceeeehhHHHHhhhhcCCCc--hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhc
Confidence 88666666666777777777766533 24555555544333 46789999999999999877754 45677888888
Q ss_pred CCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCC-CcHHHHHHHHHHHHHH
Q 008806 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLA 425 (553)
Q Consensus 368 ~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~~~~~l~~i~ 425 (553)
.|+..+|+...+.+.-++.-.-+.+. ++.+...|.....|. +.++|..++..-.-+.
T Consensus 470 ~dE~~~Vql~LLta~ik~Fl~~p~~t-q~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 470 KDETAEVQLELLTAAIKLFLKKPTET-QELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCccH-HHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 89888898877665555433222221 123333333344443 5688887776665554
No 49
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.20 E-value=5.9e-09 Score=101.22 Aligned_cols=251 Identities=24% Similarity=0.300 Sum_probs=186.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhch
Q 008806 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (553)
Q Consensus 163 ~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (553)
...+.+.+.+.|+++.+|..++..++.+.. ...+|.+...+.|+++.||..|+.+++.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 456777888899999999999999776543 4677888899999999999999998887652 234
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc------------HHHHHHHHHHHHHHHH
Q 008806 243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE------------AEVRIAAAGKVTKFCR 309 (553)
Q Consensus 243 l~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~------------~~vr~~a~~~l~~~~~ 309 (553)
.|.+.+.++ |.++.||..++.+|+.+... ..++.+...++|+. ..+|..+...++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 555555555 89999999999999987532 33555666666654 2577777777765432
Q ss_pred hhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhh
Q 008806 310 ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (553)
Q Consensus 310 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 389 (553)
+...+.+...+.+....||..++.+++.+.... ..+.+.+...+.|++..||..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 345567778888899999999999999887532 3467888899999999999999999887764
Q ss_pred chhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 390 ~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
....+.+.....+.++.++.......+.. + ...-.+.+...+.|....+|..+...++.+....
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGAL----D----LAEAALPLLLLLIDEANAVRLEAALALGQIGQEK 306 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhccc----C----chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc
Confidence 44566677777888888887766555411 1 1223445567788889999999999988877654
No 50
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.20 E-value=9.3e-09 Score=99.86 Aligned_cols=241 Identities=15% Similarity=0.055 Sum_probs=151.1
Q ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhch
Q 008806 164 LRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (553)
Q Consensus 164 l~~~l~~ll-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (553)
..+.+...+ .|++..|+..++.++...-. ...+..+...+.|.++.||..++++|+.+.. ...
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHH
Confidence 344444445 46677777766655542211 1124555666777777888888888876431 335
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHH
Q 008806 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 322 (553)
Q Consensus 243 l~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 322 (553)
.+.+..++++.++.||.+++..++... ..-.+.+..+++|+++.||..|+.+++.+.. ....|
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~ 181 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSES 181 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence 566677778888888877776666521 1234566777778888888888888876543 23345
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHH
Q 008806 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (553)
Q Consensus 323 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l 402 (553)
.+...+.|.+..||..++..+..+.. . ...+.+.....+....++..+...+... |. +..++.|
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG~----~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L 245 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAGS----R----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL 245 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCC----H----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence 55566778888888888887766642 1 1233444444444455554444444433 21 3566777
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 403 ~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
..++.+++ +|..++.+++.+. ....++.++..+.|+. +|..|.+++..|.-
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~lg--------~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLVG--------DVEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHcC--------CcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 77777765 7888888887665 2456777777777764 88888888877764
No 51
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.19 E-value=1.1e-08 Score=99.30 Aligned_cols=240 Identities=15% Similarity=0.030 Sum_probs=170.5
Q ss_pred HHHHHHHHh-cCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHH
Q 008806 126 YIPLVKRLA-AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIM 204 (553)
Q Consensus 126 ~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~ 204 (553)
.++.+...+ .+++..++..++..+..... ...+..+.+.+.|.++.||.+++++|+.+-. ....
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~ 119 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED-------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAE 119 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC-------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHH
Confidence 345555555 46667777765554432211 1237778888999999999999999995432 3455
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 008806 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 284 (553)
Q Consensus 205 p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~ 284 (553)
+.+..+++++++.||..++.+++... ..-.+.+..+++|.++.||..++.++|.+.. ....|.
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~ 182 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSEST 182 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHH
Confidence 66777789999999999998877632 1134566777789999999999999998762 356778
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHH
Q 008806 285 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL 364 (553)
Q Consensus 285 l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~ 364 (553)
+...+.|.++.||.+|+.++..++. .. ..+.+..+..++.+.++..+...+... |. +..++.+.
T Consensus 183 L~~al~d~~~~VR~aA~~al~~lG~----~~----A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~ 246 (410)
T TIGR02270 183 LRLYLRDSDPEVRFAALEAGLLAGS----RL----AWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLR 246 (410)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHcCC----Hh----HHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHH
Confidence 8888999999999999999976533 21 223333444556665655555444433 22 24678888
Q ss_pred HhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 008806 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 365 ~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~ 425 (553)
.+++|+. +|..++.+++.+.. ...++.|...+.|+. +|..+-++++.|.
T Consensus 247 ~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 247 ELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 8898865 99999999998876 556777888877765 8888888888776
No 52
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.18 E-value=4.8e-07 Score=96.49 Aligned_cols=452 Identities=17% Similarity=0.149 Sum_probs=253.2
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChH-HHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcch
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEE-RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~-~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 88 (553)
+..++-.|..+...+|..|++.|+.+.. .+|. -..+.+...+.. ..|....||.+|...+|+++-... +......
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive-~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--e~~~qyY 894 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVE-ADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--ELIFQYY 894 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHh-cChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH--HHHHHHH
Confidence 5566777888888999999999999854 3443 335666666777 899999999999999998875332 2333344
Q ss_pred hHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCC--CC----hHHHH
Q 008806 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS--AP----DILKT 162 (553)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~--~~----~~~~~ 162 (553)
..+.+-..|+.-.||+.+++.+..++...+.-.....+.--+.+-.+|++..+...+.+.+..++-. -+ +....
T Consensus 895 ~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~ 974 (1692)
T KOG1020|consen 895 DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKAR 974 (1692)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHH
Confidence 4455556688999999999999999998776443444555555556777777888888877665421 11 00111
Q ss_pred HH---HHHH---HHhcCCCCHHHHHHHHH---------HHHHHHhhhCc-------hhhhhhHHHHHHHhhhCCChhHHH
Q 008806 163 EL---RSIY---TQLCQDDMPMVRRSAAS---------NLGKFAATVEP-------AHLKTDIMSIFEDLTQDDQDSVRL 220 (553)
Q Consensus 163 ~l---~~~l---~~ll~d~~~~Vr~~a~~---------~l~~l~~~~~~-------~~~~~~l~p~l~~~~~d~~~~vr~ 220 (553)
.+ .... ..+..|+.+..-....+ +...++...-. ....+.+...-....++++.++|.
T Consensus 975 kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~ 1054 (1692)
T KOG1020|consen 975 KISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRL 1054 (1692)
T ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHH
Confidence 00 0000 01111211111000000 00000000000 000001111000112344444444
Q ss_pred HH-HHHHHHhhccCCc---chhhhchHHH------------------------------------------HHHhcCCCC
Q 008806 221 LA-VEGCAALGKLLEP---QDCVAHILPV------------------------------------------IVNFSQDKS 254 (553)
Q Consensus 221 ~a-~~~l~~l~~~~~~---~~~~~~ll~~------------------------------------------l~~l~~d~~ 254 (553)
.+ +.+|..++...+. ......+.|+ +.+.+-..+
T Consensus 1055 ~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g 1134 (1692)
T KOG1020|consen 1055 LAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMG 1134 (1692)
T ss_pred HHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcc
Confidence 33 3444444443210 0111111111 111111122
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhc-------CCC----cHHHHHHHHHHHHHHHHhhC--------H-
Q 008806 255 WRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLL-------RDN----EAEVRIAAAGKVTKFCRILN--------P- 313 (553)
Q Consensus 255 ~~vR~~~~~~l~~l~~~~~~~~~-~~~llp~l~~ll-------~d~----~~~vr~~a~~~l~~~~~~~~--------~- 313 (553)
-.+-..+..+++.++......+. .......+.+.+ .++ ....-.-.+.++|.++.++. +
T Consensus 1135 ~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~ 1214 (1692)
T KOG1020|consen 1135 MATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKT 1214 (1692)
T ss_pred hHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCcc
Confidence 22233344455555543322211 012222222222 111 11122234566677776542 1
Q ss_pred -----HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChH-H-HHHHHHHHHHhh
Q 008806 314 -----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD-V-RLNIISKLDQVN 386 (553)
Q Consensus 314 -----~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~-V-R~~a~~~l~~~~ 386 (553)
+...+.++-.+.-+..+.+-.+|..++.+++.+|-.-+.-++.+.+..++...+.|.+.. . +..++.++..+.
T Consensus 1215 ~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL 1294 (1692)
T KOG1020|consen 1215 FLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYL 1294 (1692)
T ss_pred chhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 134556666677777888899999999999999977666667778888888888765443 3 455555555544
Q ss_pred hhh------------------------------chh----hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh
Q 008806 387 QVI------------------------------GID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (553)
Q Consensus 387 ~~~------------------------------~~~----~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~ 432 (553)
..- |.+ .+.+..++.+.+.+-|.+-++|..++..+.-+...-=...
T Consensus 1295 ~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP 1374 (1692)
T KOG1020|consen 1295 LEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHP 1374 (1692)
T ss_pred HHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCc
Confidence 221 111 1335677778888889999999999999987664311111
Q ss_pred hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 433 ~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
.+.+|++..+-+|+....|..|...+..|-+.+
T Consensus 1375 --~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY 1407 (1692)
T KOG1020|consen 1375 --VHCVPTLIALETDPSQAIRHVADELLKEIDEKY 1407 (1692)
T ss_pred --cchhhhheeecCChHHHHHHHHHHHHHHHHHhh
Confidence 257899999999999999999999999988765
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.8e-07 Score=91.97 Aligned_cols=376 Identities=16% Similarity=0.110 Sum_probs=230.0
Q ss_pred cHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCc
Q 008806 60 DDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWF 139 (553)
Q Consensus 60 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 139 (553)
+.+.+.++-+.++-+++.. ....++|...+.....+.+|++-..--|...++.-++-.. .-+..+++.++|+++
T Consensus 49 d~~KleAmKRIia~iA~G~----dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~L~DpN~ 122 (968)
T KOG1060|consen 49 DSLKLEAMKRIIALIAKGK----DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKALKDPNQ 122 (968)
T ss_pred cHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhhhcCCcH
Confidence 4456677777777776632 2456777777777788899998877777777765443221 135678899999999
Q ss_pred chhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHH
Q 008806 140 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 219 (553)
Q Consensus 140 ~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr 219 (553)
.+|..|++.+..+--. -...-++-.+.++..|+++.||+.|+.++..+-..-+ +. ..++...+..++.|.++-|-
T Consensus 123 LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~-k~qL~e~I~~LLaD~splVv 197 (968)
T KOG1060|consen 123 LIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQ-KDQLEEVIKKLLADRSPLVV 197 (968)
T ss_pred HHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hh-HHHHHHHHHHHhcCCCCcch
Confidence 9999999988776421 1334567788889999999999999999998776433 22 34888999999999999999
Q ss_pred HHHHHHHHHhhccCCcchhhhchHHH---HHHhcCCCCHHHHHHHHHHHHHHHHH-hCCC----------c---------
Q 008806 220 LLAVEGCAALGKLLEPQDCVAHILPV---IVNFSQDKSWRVRYMVANQLYELCEA-VGPE----------P--------- 276 (553)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~ll~~---l~~l~~d~~~~vR~~~~~~l~~l~~~-~~~~----------~--------- 276 (553)
-+|+.++..++.. ..+.+-+. ++.++.|.+..=...++..|-..++. +... .
T Consensus 198 gsAv~AF~evCPe-----rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~ 272 (968)
T KOG1060|consen 198 GSAVMAFEEVCPE-----RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKY 272 (968)
T ss_pred hHHHHHHHHhchh-----HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccc
Confidence 9999988887742 12223333 44455565433344555666666553 1111 0
Q ss_pred ----cc---c----chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHh
Q 008806 277 ----TR---M----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 345 (553)
Q Consensus 277 ----~~---~----~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~ 345 (553)
++ + .++.....++...++.|-.++++.+-.++.. .+. ..+...+..++. .+..++..+++.+..
T Consensus 273 ~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~---~~~-~~i~kaLvrLLr-s~~~vqyvvL~nIa~ 347 (968)
T KOG1060|consen 273 NEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK---NQV-TKIAKALVRLLR-SNREVQYVVLQNIAT 347 (968)
T ss_pred cccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH---HHH-HHHHHHHHHHHh-cCCcchhhhHHHHHH
Confidence 00 1 1344444566777788888888776655432 222 334444555554 345677777777777
Q ss_pred hhhhhCHHhHHHhHHHHHHHhh-CCCC-hHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 008806 346 MAPLLGKDATIEQLLPIFLSLL-KDEF-PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (553)
Q Consensus 346 l~~~~~~~~~~~~l~p~l~~~l-~d~~-~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~ 423 (553)
++..-.. -+.|.+..++ ...+ ..++.-=+..|..++.. .-...+++-+....++.+.++-.+++.+||.
T Consensus 348 ~s~~~~~-----lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~e----sni~~ILrE~q~YI~s~d~~faa~aV~AiGr 418 (968)
T KOG1060|consen 348 ISIKRPT-----LFEPHLKSFFVRSSDPTQVKILKLEILSNLANE----SNISEILRELQTYIKSSDRSFAAAAVKAIGR 418 (968)
T ss_pred HHhcchh-----hhhhhhhceEeecCCHHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 7643221 2334443333 1111 22333333333333331 1125566666666666666666677777777
Q ss_pred HHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 424 i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
.+...+. +.++.+..++.++...+..|-..++..+..+...-
T Consensus 419 CA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 419 CASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred HHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 7655443 23455556666666666666666666666666543
No 54
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.15 E-value=1.1e-09 Score=98.23 Aligned_cols=301 Identities=15% Similarity=0.143 Sum_probs=201.1
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhhCch---hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc--
Q 008806 163 ELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-- 236 (553)
Q Consensus 163 ~l~~~l~~ll-~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 236 (553)
-++|.|.+++ +......+-.++.+|.+++..-..+ .+....+|.+.+++.+.+..||..++.+|+.++.-...-
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 3566777766 4444556678889999988754332 122357899999999999999999999999988532210
Q ss_pred -hhhhchHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 008806 237 -DCVAHILPVIVNFSQDKS--WRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (553)
Q Consensus 237 -~~~~~ll~~l~~l~~d~~--~~vR~~~~~~l~~l~~~~~~~~---~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~ 310 (553)
......+..+..++.... -.+-+.+.++|.+++..-.+.. ...+.+|++.+++...+++|-.-|+++++.+...
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence 111112333333333322 3556667889999987643321 2246899999999999999999999999887653
Q ss_pred hCHHHHHH-----hHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh---HHHhHHHHHHHhhCCCChHHHHHHHHHH
Q 008806 311 LNPELAIQ-----HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (553)
Q Consensus 311 ~~~~~~~~-----~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l 382 (553)
+..... .+.+.+.+++.+++..+..-++..++.+...-+.+. ..--+++.+..+|..+...+|..++.++
T Consensus 274 --~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 274 --PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred --cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 322222 244567888999999999999999999876433221 1224567777788888789999999999
Q ss_pred HHhhhhhchh---hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh-ChhhhHHH-----HHHHHHHHccCCchHHH
Q 008806 383 DQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFDDK-----LGALCMQWLQDKVYSIR 453 (553)
Q Consensus 383 ~~~~~~~~~~---~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~-~~~~~~~~-----l~~~l~~~l~D~~~~VR 453 (553)
..+...-... .+...++|-|..++...++.+|..+|.+++....+. +......+ ++..+..+|.-.+..+-
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkii 431 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKII 431 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccch
Confidence 8875422111 133678899999999999999999999999877653 22222222 23344455543333355
Q ss_pred HHHHHHHHHHHH
Q 008806 454 DAAANNLKRLAE 465 (553)
Q Consensus 454 ~~a~~~l~~l~~ 465 (553)
+.++.++..+.+
T Consensus 432 ev~LD~~eniLk 443 (526)
T COG5064 432 EVALDAIENILK 443 (526)
T ss_pred hhhHHHHHHHHh
Confidence 566777776665
No 55
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=4.9e-08 Score=95.31 Aligned_cols=241 Identities=21% Similarity=0.211 Sum_probs=169.6
Q ss_pred CCChhHHHHHHHHHHHhhccCCc-chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 008806 213 DDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291 (553)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d 291 (553)
+.....|..+......++..-+. ....+.+...+..+..|.+++||..+++.+-.+.+.+.- .........++++|
T Consensus 169 ~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL---~~~~Y~~A~~~lsD 245 (823)
T KOG2259|consen 169 ISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL---SKACYSRAVKHLSD 245 (823)
T ss_pred cccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc---cHHHHHHHHHHhcc
Confidence 34445566665555555433222 112234555577888999999999999998887763321 23466777888999
Q ss_pred CcHHHHHHHHHHHHHHHHhhC-H-------HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHH----HhH
Q 008806 292 NEAEVRIAAAGKVTKFCRILN-P-------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI----EQL 359 (553)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~~-~-------~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l 359 (553)
.+..||.+|++.+..+++... + ....+.....++..+.|.+|.||..++++++.+...- .++.. .++
T Consensus 246 ~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee~i~QTLdKKl 324 (823)
T KOG2259|consen 246 DYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EEIIQQTLDKKL 324 (823)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HHHHHHHHHHHH
Confidence 999999999998888877651 1 1334556667778889999999999999998875431 11111 111
Q ss_pred H--------------------------------------------------HHHHHhhCCCChHHHHHHHHHHHHhhhhh
Q 008806 360 L--------------------------------------------------PIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (553)
Q Consensus 360 ~--------------------------------------------------p~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 389 (553)
+ ..+...+.|+..+||.+|..+++.+...-
T Consensus 325 ms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss 404 (823)
T KOG2259|consen 325 MSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS 404 (823)
T ss_pred hhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC
Confidence 1 22444566777799999999999887632
Q ss_pred chhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 008806 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 462 (553)
Q Consensus 390 ~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~ 462 (553)
..+...-+..|.++++|....||..++.++..|+..+ .+.+.-++.++..+.|.+.+||++.-+.|+.
T Consensus 405 --P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l---~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 405 --PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL---AIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred --CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh---eecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 1234667888999999999999999999999998763 2345677888899999999999988776653
No 56
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.7e-06 Score=88.25 Aligned_cols=397 Identities=17% Similarity=0.086 Sum_probs=234.7
Q ss_pred cchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcC-CCcchhhhHhhhhHhhcCC--CChHHHH
Q 008806 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPS--APDILKT 162 (553)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~--~~~~~~~ 162 (553)
.++..+...++|.+..||=.|+++++.+...++.+-.. +++..+..+.+. ++...=..++-+++.++.+ ..+....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~ 419 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE 419 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 45555666677999999999999999999999854333 333333333221 1122233788888887754 3455778
Q ss_pred HHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHhhhCchhhhh---hHHHH-HHHhhhCCChhHHHHHHHHHHHhh
Q 008806 163 ELRSIYTQLCQD--------DMPMVRRSAASNLGKFAATVEPAHLKT---DIMSI-FEDLTQDDQDSVRLLAVEGCAALG 230 (553)
Q Consensus 163 ~l~~~l~~ll~d--------~~~~Vr~~a~~~l~~l~~~~~~~~~~~---~l~p~-l~~~~~d~~~~vr~~a~~~l~~l~ 230 (553)
+++|.+.+-+.= ....||.+++..+=.++....+..+.+ .+.+. +...+-|.+-+.|.+|..++-+..
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 888888876642 245799999999988888877654433 23333 334567999999999988885544
Q ss_pred ccCCcc------------------------------hhhhchHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 008806 231 KLLEPQ------------------------------DCVAHILPVIVNF----SQDKSWRVRYMVANQLYELCEAVGPEP 276 (553)
Q Consensus 231 ~~~~~~------------------------------~~~~~ll~~l~~l----~~d~~~~vR~~~~~~l~~l~~~~~~~~ 276 (553)
...+.. .+....-|.+..+ +..-+..+|..++.+|.++...-++..
T Consensus 500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~ 579 (1133)
T KOG1943|consen 500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYL 579 (1133)
T ss_pred ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhh
Confidence 332111 0001122223333 334466789999999999877654433
Q ss_pred cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---------HHH---HHhHHHHHHHhccCC--cHHHHHHHHHH
Q 008806 277 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------ELA---IQHILPCVKELSSDS--SQHVRSALASV 342 (553)
Q Consensus 277 ~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---------~~~---~~~l~~~l~~l~~d~--~~~vr~~~~~~ 342 (553)
....+|.++......+...|..+..+.+.+...+.. +.. ...++|.+..---.. ....|.+.+..
T Consensus 580 -a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~ 658 (1133)
T KOG1943|consen 580 -ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKF 658 (1133)
T ss_pred -cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHH
Confidence 345666666666667778888776666655443211 111 112233332211111 24566667766
Q ss_pred HHhhhhhhC---HHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhc--hhhHHhhHHH-HHHHhhcCCCcHHHHH
Q 008806 343 IMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLP-AIVELAEDRHWRVRLA 416 (553)
Q Consensus 343 l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~--~~~~~~~ll~-~l~~~~~d~~~~vR~~ 416 (553)
+..+...-. .++..+....++.+.+.+++ .+|.++..+++.++..+- .+.....++. .+..+.+..+..+|+.
T Consensus 659 Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g 737 (1133)
T KOG1943|consen 659 IEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRG 737 (1133)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHH
Confidence 666653222 23334444555666665665 899999999999987652 2221122333 3344444557788887
Q ss_pred HHHHHHHHHhhhChhhhHHHHHHHHHHH-ccCCchHHHHHHHHHHHHHHHHhCh---hHHhhhhhhhhhhhhh
Q 008806 417 IIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQKSHVLD 485 (553)
Q Consensus 417 ~~~~l~~i~~~~~~~~~~~~l~~~l~~~-l~D~~~~VR~~a~~~l~~l~~~~~~---~~~~~~i~p~l~~~l~ 485 (553)
...+++.+....-.....+.+...++.. -.|..++-|...+.++.+++.+.+. ....+++...|.+.++
T Consensus 738 ~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ld 810 (1133)
T KOG1943|consen 738 LILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALD 810 (1133)
T ss_pred HHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 7777765543322222233444333332 2344778899999999999998872 1122445555555554
No 57
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.12 E-value=9.8e-09 Score=93.64 Aligned_cols=188 Identities=21% Similarity=0.249 Sum_probs=130.3
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHH---hHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH
Q 008806 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQ---HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353 (553)
Q Consensus 281 llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~---~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (553)
+...+.+.-.+.+|+.|..++..|..+...-.+. .+.+ .+++.+...+.|....|-..++.++..++..+|..
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 4444444446677888888888887777654111 2222 23355556667777889999999999999998876
Q ss_pred h--HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhC--
Q 008806 354 A--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-- 429 (553)
Q Consensus 354 ~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~-- 429 (553)
+ ..+.++|.+...+.|+...+|..|..++..++...+.. ...+.+.+.....++++.+|..++.++..+....+
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS--PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 4 35778999999999999999999999999999987611 12237788888999999999999999999988887
Q ss_pred hh-----hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh
Q 008806 430 VG-----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 430 ~~-----~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
.. ...+.+.+.+..++.|++++||..|-.++..+.+.+|..
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 12 123568899999999999999999999999999998865
No 58
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.11 E-value=2.1e-09 Score=96.41 Aligned_cols=266 Identities=14% Similarity=0.119 Sum_probs=193.8
Q ss_pred hhHHHHHHHhh-hCCChhHHHHHHHHHHHhhccCCcch---hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---
Q 008806 201 TDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--- 273 (553)
Q Consensus 201 ~~l~p~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--- 273 (553)
..++|-+.+++ +.+..-....|..++..++....... .-....|.+.+++.+.+..||..+.++||+++....
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 35678888877 45555667788999999988755432 123478999999999999999999999999974321
Q ss_pred CCccccchHHHHHHhcCCCcH--HHHHHHHHHHHHHHHhhCH--H-HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhh
Q 008806 274 PEPTRMDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348 (553)
Q Consensus 274 ~~~~~~~llp~l~~ll~d~~~--~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~ 348 (553)
+.......+..++.++..+.. .+-..+.++|+.++..-.+ + ......+|.+.+++...+..|-.-++++++.+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 111112345556666655544 4556788999998875322 2 3356788999999999999999999999999986
Q ss_pred hhCHHh---HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh---hHHhhHHHHHHHhhcCCCcHHHHHHHHHHH
Q 008806 349 LLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (553)
Q Consensus 349 ~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~ 422 (553)
.-.... ...-+.+.+.++|..++..|..-+++.++.++..-... .+.--.++.+..+++++...+|..+|..++
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 432211 11234567889998899999999999999887643222 123456788888899998899999999999
Q ss_pred HHHhhhChh---hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 423 LLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 423 ~i~~~~~~~---~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
.|..+-... .+...++|.+..+++.-+..+|..|++++......
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 887543221 23456889999999999999999999999887654
No 59
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.3e-06 Score=84.81 Aligned_cols=333 Identities=15% Similarity=0.082 Sum_probs=176.3
Q ss_pred hhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhh
Q 008806 122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT 201 (553)
Q Consensus 122 ~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 201 (553)
....+-+-+..++++..+.+|.-|+-++-.+.-.- ++.....+|.+.+-++|++|.|..+|...+-.++..-+....
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-- 217 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-- 217 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--
Confidence 33445556667777777777777766655544332 223455677777888888888888888888888776654332
Q ss_pred hHHHHHHHhhhC--CChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-hCCCc-c
Q 008806 202 DIMSIFEDLTQD--DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA-VGPEP-T 277 (553)
Q Consensus 202 ~l~p~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~-~~~~~-~ 277 (553)
.+-|.|.+++.+ ++| +-...++.+++++..=+ .....++|.+.++++..+. ..-..+++..++.. +.... .
T Consensus 218 ~LAP~ffkllttSsNNW-mLIKiiKLF~aLtplEP--RLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLEP--RLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred cccHHHHHHHhccCCCe-ehHHHHHHHhhccccCc--hhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCC
Confidence 456766666543 334 33445566666554311 1334577777777664431 22233444444332 11111 0
Q ss_pred ccchHHH----HHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH
Q 008806 278 RMDLVPA----YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353 (553)
Q Consensus 278 ~~~llp~----l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (553)
....+.. +-.++.|+|++.+.-++-+++.+++.... ....-...+.+.+.|.+..+|.-++..+..+.. ++
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~--~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs---kk 367 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK--AVQAHKDLILRCLDDKDESIRLRALDLLYGMVS---KK 367 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH--HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh---hh
Confidence 1122223 33456788888888888888877765322 233444566677788888888888877777663 22
Q ss_pred hHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHH--hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh
Q 008806 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (553)
Q Consensus 354 ~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~--~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~ 431 (553)
...+-+..++.++...+....|...+..+-.+|..-....+. +-.+..+.++..=+..+.-.-..+.+-.++..+.
T Consensus 368 Nl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~-- 445 (877)
T KOG1059|consen 368 NLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVP-- 445 (877)
T ss_pred hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheech--
Confidence 222222222233333333355555555444444432211110 3334445555433332222222222322222111
Q ss_pred hhHHHHHHHHHHHccCC-----------chHHHHHHHHHHHHHHHHhCh
Q 008806 432 FFDDKLGALCMQWLQDK-----------VYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 432 ~~~~~l~~~l~~~l~D~-----------~~~VR~~a~~~l~~l~~~~~~ 469 (553)
...+..+..+..++.|+ -.+|-.+|++++|..++...+
T Consensus 446 ~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven 494 (877)
T KOG1059|consen 446 SIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVEN 494 (877)
T ss_pred hhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhC
Confidence 11222333333444433 467888999999999987643
No 60
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=4.9e-06 Score=82.56 Aligned_cols=265 Identities=14% Similarity=0.064 Sum_probs=161.5
Q ss_pred HHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcchhH
Q 008806 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (553)
Q Consensus 12 ~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 90 (553)
+.+...|.|.-+.+|..|+-.+=.+.... |+..++.+ |.+.+ +.|++|.|..+|..++.++++..+.. | -.+.|.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~F-prL~EkLeDpDp~V~SAAV~VICELArKnPkn-y-L~LAP~ 222 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCF-PRLVEKLEDPDPSVVSAAVSVICELARKNPQN-Y-LQLAPL 222 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhH-HHHHHhccCCCchHHHHHHHHHHHHHhhCCcc-c-ccccHH
Confidence 45667788999999999998888776555 55544444 44444 99999999999999999999865542 2 247787
Q ss_pred HHhhhcc-chhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHh-----hcCCCChH--HHH
Q 008806 91 LETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI-----AYPSAPDI--LKT 162 (553)
Q Consensus 91 l~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~-----l~~~~~~~--~~~ 162 (553)
+..++.+ .+.=+-...++.++.+...- ......++|-+.++.++... .....+++.. +....+.+ ..+
T Consensus 223 ffkllttSsNNWmLIKiiKLF~aLtplE--PRLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d~~asiq 298 (877)
T KOG1059|consen 223 FYKLLVTSSNNWVLIKLLKLFAALTPLE--PRLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSDHSASIQ 298 (877)
T ss_pred HHHHHhccCCCeehHHHHHHHhhccccC--chhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCCcHHHHH
Confidence 7776543 33323333334443333221 12334466666666554321 1111112222 22223233 556
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhch
Q 008806 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (553)
Q Consensus 163 ~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (553)
-.+..+..++.|.+++.+.-.+-+++.+++.-+. ..+.-.+++.+.+.|.+..+|..|+..+..+... +. ...+
T Consensus 299 LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~--~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk---kN-l~eI 372 (877)
T KOG1059|consen 299 LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK--AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK---KN-LMEI 372 (877)
T ss_pred HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH--HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh---hh-HHHH
Confidence 6788899999999999999999999999986553 2334456677889999999999999998777642 11 1122
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcC
Q 008806 243 LPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLR 290 (553)
Q Consensus 243 l~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~~~~~--~~~llp~l~~ll~ 290 (553)
...+.....+. ...-|...+..+-.+|..-.-... .+..+.+++++.+
T Consensus 373 Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~ 423 (877)
T KOG1059|consen 373 VKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELAR 423 (877)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHh
Confidence 22222222222 235666666666666654332221 1345666666543
No 61
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.00 E-value=1.2e-08 Score=100.96 Aligned_cols=253 Identities=15% Similarity=0.169 Sum_probs=194.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcC
Q 008806 172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ 251 (553)
Q Consensus 172 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~ 251 (553)
+.-.+..-|......|....+.++++.+...++|.+...+.-.+ . -...+.-+-.++..+....+...++|.+.++..
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-a-~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~ 340 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-A-ASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK 340 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-c-chhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence 34456667777777888878888878888888888876554333 0 111222333444555556677789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCC
Q 008806 252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 331 (553)
Q Consensus 252 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~ 331 (553)
..+..+|....+.+...+..+.++...+++.|.+...+.|.++.+|..++.++..++..++.......++-.+..+..|.
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE 420 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence 98999999999999999888888888888999999999999999999999999988888888766677888888887788
Q ss_pred cHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCc
Q 008806 332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW 411 (553)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~ 411 (553)
+..+|.....+++.++..+....-...+.-.+...++|+...-|.++...+....+.+..+.....++|.+.-+.-|++.
T Consensus 421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~ 500 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK 500 (690)
T ss_pred cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence 88888888888888888766554333334445556888888889988888888888887777778888888888888888
Q ss_pred HHHHHHHHHHHHHHh
Q 008806 412 RVRLAIIEYIPLLAS 426 (553)
Q Consensus 412 ~vR~~~~~~l~~i~~ 426 (553)
.+|..+..++.....
T Consensus 501 ~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 501 TVRDTAEKAIRQFLE 515 (690)
T ss_pred chhhHHHHHHHHHHh
Confidence 888888777765553
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.99 E-value=3.6e-08 Score=89.90 Aligned_cols=148 Identities=21% Similarity=0.147 Sum_probs=107.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch--hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhc
Q 008806 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 241 (553)
Q Consensus 164 l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (553)
+...+...+.|....|-+.++..+..++..++.. ...+.++|.+.+.+.|....+|..|..++..+...++. ...
T Consensus 54 ~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~ 130 (228)
T PF12348_consen 54 LLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPK 130 (228)
T ss_dssp --HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----H
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHH
Confidence 3456666677888889999999999999988864 34567899999999999999999999999999988771 123
Q ss_pred h-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCc-c----ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 008806 242 I-LPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP-T----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (553)
Q Consensus 242 l-l~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--~~~-~----~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (553)
+ .+.+....+++++.+|..++..+..+....+ ... . .+.+.+.+.+++.|.+++||.+|-.++..+.+.+|.
T Consensus 131 ~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 131 ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3 7888889999999999999999999988877 111 1 145888999999999999999999999999888775
Q ss_pred H
Q 008806 314 E 314 (553)
Q Consensus 314 ~ 314 (553)
.
T Consensus 211 ~ 211 (228)
T PF12348_consen 211 R 211 (228)
T ss_dssp H
T ss_pred h
Confidence 4
No 63
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2e-05 Score=81.34 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHhCCCccccchHHHHHHhcC------CC--cHHHHHHHHHHHHHHHHhhCH-----HHHHHhHHHHHHH
Q 008806 260 MVANQLYELCEAVGPEPTRMDLVPAYVRLLR------DN--EAEVRIAAAGKVTKFCRILNP-----ELAIQHILPCVKE 326 (553)
Q Consensus 260 ~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~------d~--~~~vr~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~ 326 (553)
++...+..++..-|++.. +.+++.+.+.+. .+ ++.-+.+|+..++.+++.+.. ..+...+.+.+..
T Consensus 391 Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 455666777766666553 567777777765 33 345567899999999877643 2444567778888
Q ss_pred hccCCcHHHHHHHHHHHHhhh-hhhCHHhHHHhHHHHHHHhhC-CCChHHHHHHHHHHHHhhhhhch--hhHH---hhHH
Q 008806 327 LSSDSSQHVRSALASVIMGMA-PLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI--DLLS---QSLL 399 (553)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~-~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~--~~~~---~~ll 399 (553)
.++++.-..|.-+|+.++.++ ..+........++....+++. |.+-.||-.|+-+|..++..... +.+. +.++
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~m 549 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIM 549 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence 889999999999999999999 455555555667777777776 88888999999999999876542 2232 3334
Q ss_pred HHHHHhhcCCCcHHHHH-HHHHHHHHHhhhChh--hhHHHHHHHHHHHcc
Q 008806 400 PAIVELAEDRHWRVRLA-IIEYIPLLASQLGVG--FFDDKLGALCMQWLQ 446 (553)
Q Consensus 400 ~~l~~~~~d~~~~vR~~-~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~ 446 (553)
..|..+.++-+...-.. .-..++.++..+.+- ....++...+++++.
T Consensus 550 q~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 550 QELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 44444444433322222 222233333333221 233456666666665
No 64
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=4e-05 Score=80.81 Aligned_cols=350 Identities=14% Similarity=0.157 Sum_probs=218.8
Q ss_pred hHHHHHHHHhcCCCcchhhhHhhhhHhhcCCC---Ch--H-------HHHHHHHHHHHhcCCC------CHHHHHHHHHH
Q 008806 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSA---PD--I-------LKTELRSIYTQLCQDD------MPMVRRSAASN 186 (553)
Q Consensus 125 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~--~-------~~~~l~~~l~~ll~d~------~~~Vr~~a~~~ 186 (553)
.+.|.+...+.-.. ..|...|..+..++... .+ + +-..++|.+.+.-..+ ....|...+..
T Consensus 518 ~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~ 596 (1176)
T KOG1248|consen 518 DLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEI 596 (1176)
T ss_pred HHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHH
Confidence 35555555544433 77887777777666543 11 0 2345677777765443 23344444444
Q ss_pred HHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHH----HHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHH
Q 008806 187 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLA----VEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 262 (553)
Q Consensus 187 l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a----~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~ 262 (553)
.....-..-+.++...+.....+...+.+..++..- +..+..++...+.+.. ..+........+..+..++.-+.
T Consensus 597 i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v-s~l~~v~~~~e~~~~~~vQkK~y 675 (1176)
T KOG1248|consen 597 IRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV-SKLFTVDPEFENSSSTKVQKKAY 675 (1176)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH-HHHHHhhHHhhccccHHHHHHHH
Confidence 331111111233334455555555666655554332 3333444444443332 33333333444555788999999
Q ss_pred HHHHHHHHHhCCCcccc----chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhHHHHHHHhccCCcHHHH
Q 008806 263 NQLYELCEAVGPEPTRM----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVR 336 (553)
Q Consensus 263 ~~l~~l~~~~~~~~~~~----~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr 336 (553)
+.|..++..-..+.... .+...+..-+++.....|...+.++..+.+..+.+ .+....+|-+.-+.++.+..-|
T Consensus 676 rlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR 755 (1176)
T KOG1248|consen 676 RLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKAR 755 (1176)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 99999887611121222 34444555556667788999999999999888744 3344555555555588888888
Q ss_pred HHHHHHHHhhhh-----hhCHHh---HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhh----chhhHHhhHHHHHHH
Q 008806 337 SALASVIMGMAP-----LLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVE 404 (553)
Q Consensus 337 ~~~~~~l~~l~~-----~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~----~~~~~~~~ll~~l~~ 404 (553)
+.+..+|..++. ..|.+. ..+.+++.+...+-.+...++...+-++..+.... +.+ ....++..+..
T Consensus 756 ~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~-~l~~li~~V~~ 834 (1176)
T KOG1248|consen 756 RNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDE-TLEKLISMVCL 834 (1176)
T ss_pred hhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHH
Confidence 888888888772 234322 35566777777665555555555444555544332 333 33677777788
Q ss_pred hhcCCCcHHHHHHHHHHHHHHhhhChhh---hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhh
Q 008806 405 LAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (553)
Q Consensus 405 ~~~d~~~~vR~~~~~~l~~i~~~~~~~~---~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p 478 (553)
.+...+..++.+|+..+..+...++... +.+.++|.++.++.|....+|..+-..+..+++.+|.+.. +.++|
T Consensus 835 ~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL-e~~~p 910 (1176)
T KOG1248|consen 835 YLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL-ESFLP 910 (1176)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH-HhhCH
Confidence 8899999999999999999988877753 4566899999999999999999999999999999998765 34444
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=7.8e-06 Score=82.29 Aligned_cols=420 Identities=11% Similarity=0.124 Sum_probs=238.4
Q ss_pred HHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHH
Q 008806 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91 (553)
Q Consensus 13 ~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 91 (553)
.+...|+|.+..+--.|+.+++.++ +.+....|.|-+.+ ++..++.+|+.|+.|..++.+..++ ....+.+-.
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~----s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~ 184 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNIC----SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAF 184 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccC----CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHH
Confidence 3446677777776666777776663 44556788888888 8889999999999999998876543 444566666
Q ss_pred HhhhccchhHHHHHHHHHHHHHHhhcChh-----hhhhhHHHHHHHHhcCCCc-chhhhHhhhhHhhcCCCChHHHHHHH
Q 008806 92 ETLCTVEETCVRDKAVESLCRIGSQMRES-----DLVDWYIPLVKRLAAGEWF-TARVSACGLFHIAYPSAPDILKTELR 165 (553)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~~~~~~~~~-~~r~~~~~~l~~l~~~~~~~~~~~l~ 165 (553)
.+++.+.+..|-.+++..+.++++.-++. +..+.++..++++.+...+ +.- +..++.-..+--+
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd----------v~gi~dPFLQi~i 254 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD----------VHGISDPFLQIRI 254 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC----------ccCCCchHHHHHH
Confidence 77777888888777777777777653321 1222234444444332210 000 0001111222222
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch-hhhhh-HHHHHHHh-hhCCChhHHHHHHHHHHHhhccCCcc------
Q 008806 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-HLKTD-IMSIFEDL-TQDDQDSVRLLAVEGCAALGKLLEPQ------ 236 (553)
Q Consensus 166 ~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~-l~p~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~------ 236 (553)
-.+..++...+++....+...|++++...+.. ..-+. +.+..... .-+.+...|..|+.+++.+...-+..
T Consensus 255 LrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 255 LRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 33444555566777777777777777654321 11111 11111111 12455667777777777665432211
Q ss_pred -----------hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHH
Q 008806 237 -----------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305 (553)
Q Consensus 237 -----------~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~ 305 (553)
...+.=-..+..+++|++..+|+-+.+..-.+...-. ...++.-++..+...+++.|..++..+.
T Consensus 335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIA 410 (866)
T ss_pred hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 0111123346678899999999988887776654311 2346666666776678889999999999
Q ss_pred HHHHhhCHH--HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhh-hhCHHhHHHhHHHHHHHhhC----C-CChHHHHH
Q 008806 306 KFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP-LLGKDATIEQLLPIFLSLLK----D-EFPDVRLN 377 (553)
Q Consensus 306 ~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~-~~~~~~~~~~l~p~l~~~l~----d-~~~~VR~~ 377 (553)
.+++.+.++ |+.+.++..+ ...-..|+..+...+-.+.. .++.... .....++..... | .....-..
T Consensus 411 ~laEkfaP~k~W~idtml~Vl----~~aG~~V~~dv~~nll~LIa~~~~e~~~-y~~~rLy~a~~~~~~~~is~e~l~qV 485 (866)
T KOG1062|consen 411 ELAEKFAPDKRWHIDTMLKVL----KTAGDFVNDDVVNNLLRLIANAFQELHE-YAVLRLYLALSEDTLLDISQEPLLQV 485 (866)
T ss_pred HHHHhcCCcchhHHHHHHHHH----HhcccccchhhHHHHHHHHhcCCcchhh-HHHHHHHHHHhhhhhhhhhhhhHHHH
Confidence 988888665 4444443333 22333344444443333332 2232221 111222222211 1 22334666
Q ss_pred HHHHHHHhhhhhch--------hhHHhhHHHHHHHhhcC--CCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccC
Q 008806 378 IISKLDQVNQVIGI--------DLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 447 (553)
Q Consensus 378 a~~~l~~~~~~~~~--------~~~~~~ll~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D 447 (553)
+.+++|+....+-. ..-...++..+.+++.. .+..++..++.++..+...+... .+++-..+..+...
T Consensus 486 a~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s 563 (866)
T KOG1062|consen 486 ASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSS 563 (866)
T ss_pred HHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhccc
Confidence 77888888754311 11124566666666543 34788888988888888766553 34454555555566
Q ss_pred CchHHHHHHHHH
Q 008806 448 KVYSIRDAAANN 459 (553)
Q Consensus 448 ~~~~VR~~a~~~ 459 (553)
-+.++++.|.+-
T Consensus 564 ~~~elQQRa~E~ 575 (866)
T KOG1062|consen 564 LDTELQQRAVEY 575 (866)
T ss_pred ccHHHHHHHHHH
Confidence 667777777763
No 66
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.95 E-value=1.5e-07 Score=90.55 Aligned_cols=293 Identities=12% Similarity=0.056 Sum_probs=202.3
Q ss_pred hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcC-CCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhh
Q 008806 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP-SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL 199 (553)
Q Consensus 121 ~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~-~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 199 (553)
+....+-|++....+|+-..+...+++.+..++. +.+++..++.+..+..++..+....|-+|.+.|.+++...+...
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv- 338 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV- 338 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-
Confidence 4555678888888888888888888888877664 56888889999999999999999999999999999998766421
Q ss_pred hhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc
Q 008806 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 279 (553)
Q Consensus 200 ~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~ 279 (553)
...-+-+..+.+|++..+-..|+.++-. . |.+...+.++..+.....|.+-.-+..+..++..++-.++.+. .
T Consensus 339 -~vcN~evEsLIsd~Nr~IstyAITtLLK---T-Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~ 411 (898)
T COG5240 339 -SVCNKEVESLISDENRTISTYAITTLLK---T-GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--L 411 (898)
T ss_pred -eecChhHHHHhhcccccchHHHHHHHHH---c-CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--H
Confidence 1223445567788887775555554433 2 3444556677777777777776677777888888887766542 2
Q ss_pred chHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHh
Q 008806 280 DLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 358 (553)
Q Consensus 280 ~llp~l~~ll~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 358 (553)
..+..+...+.+ ...+-+..++.++..+.+..+.. .+..+..++.+++|-..+ +.+...++-+++..+....-..
T Consensus 412 s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~ 487 (898)
T COG5240 412 SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGK 487 (898)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcch
Confidence 456666555544 34677888889888888876432 356667777777775432 2234445555443332221122
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 008806 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 359 l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~ 425 (553)
.+-.+.+.+-=++.-||.+|+.+|.+++-........+.+...+...++|.+..+|..|..++..+-
T Consensus 488 yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 488 YVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 2222223222245779999999999888777666666788888888999999999988877777654
No 67
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.7e-06 Score=84.74 Aligned_cols=433 Identities=14% Similarity=0.151 Sum_probs=238.6
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh--cCCCcHHHHHHHHHHhhccccccCCcchhhc--
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV-- 86 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~--~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-- 86 (553)
=.++-++|++.|..++..|++.+-... +..+. .+.|+-.+.. +...+.+.++.....+.-+-+.-++....+.
T Consensus 22 ~~~ik~~Lek~~~~~KIeamK~ii~~m--lnGe~-~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMI 98 (948)
T KOG1058|consen 22 EDEIKEKLEKGDDEVKIEAMKKIIALM--LNGED-LPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMI 98 (948)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHH--HcCCC-chHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHH
Confidence 456788999999999988887654432 22233 3445544444 5666777777666555443333332233333
Q ss_pred -chhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHH
Q 008806 87 -LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR 165 (553)
Q Consensus 87 -l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~ 165 (553)
+.+.+.+-+++++..+|-..+..+.++ .+.+....++|.+..++++....||..|.-++..++..+. +...+.-
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~pDap 173 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLIPDAP 173 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhcCChH
Confidence 334456666789999998887766554 3334555678999999999999999999888888887632 2111111
Q ss_pred HHHHH-hcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHH
Q 008806 166 SIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (553)
Q Consensus 166 ~~l~~-ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 244 (553)
+.+.+ +..+.++.-++.|.-.|... .++.....+...+.+ ..+-++......++.+...+..-+. .....+.
T Consensus 174 eLi~~fL~~e~DpsCkRNAFi~L~~~----D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~p~--~~~~~i~ 246 (948)
T KOG1058|consen 174 ELIESFLLTEQDPSCKRNAFLMLFTT----DPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLANPA--EKARYIR 246 (948)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHhc----CHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcCHH--HhhHHHH
Confidence 12222 34566666666654444322 222222222221111 1122234444445555544432111 1233455
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHH
Q 008806 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (553)
Q Consensus 245 ~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (553)
.+..++...++.|+..++-++..+... ..........+++++ +.++.+++...+.-|..+.. +.+.+.+.++-.
T Consensus 247 ~i~~lL~stssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mD 321 (948)
T KOG1058|consen 247 CIYNLLSSTSSAVIFEAAGTLVTLSND---PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMD 321 (948)
T ss_pred HHHHHHhcCCchhhhhhcceEEEccCC---HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHH
Confidence 555566666667776666555444311 110111222233333 23344555555555555442 233445555556
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh---CCCChHHHHHHHHHHHHhhhhhchhhHHhhHHH
Q 008806 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (553)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l---~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~ 400 (553)
+.+.+..++-.||..++...-.+...-.-+...+.+..-+.+.- +|++..-|+..++++..+...+.. ....++|
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~ 399 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVS 399 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHH
Confidence 66778888889998888877777654333322222222222111 234455688888888887765542 3477889
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 401 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
.+.+.+.|.|..--...+..+....+.++.- ....+++..+-+ =.+..+-..|++.+|..++..+
T Consensus 400 ~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~---irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 400 LLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQ---IRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhh---hcccccchhHHHHHHHHHhhhH
Confidence 9999999988877777777777666555432 112222222211 1344566777777777776554
No 68
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.1e-05 Score=79.97 Aligned_cols=299 Identities=12% Similarity=0.148 Sum_probs=171.7
Q ss_pred hhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhh
Q 008806 46 RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124 (553)
Q Consensus 46 ~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~ 124 (553)
.+.+...+++ +.+.++.....|..+++++...--.+.+..++-.+|. ..+..+.||+.|.-++-.+.+..++-.-..
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLv--S~~~~~~vkqkaALclL~L~r~spDl~~~~ 186 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLV--SGSSMDYVKQKAALCLLRLFRKSPDLVNPG 186 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHh--CCcchHHHHHHHHHHHHHHHhcCccccChh
Confidence 3445555555 6677887778888888877553222333334443332 235678899999989989888765533334
Q ss_pred hHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcC-------C---------CCHHHHHHHHHHHH
Q 008806 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-------D---------DMPMVRRSAASNLG 188 (553)
Q Consensus 125 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~-------d---------~~~~Vr~~a~~~l~ 188 (553)
....-+.++++|.+-.+-.++..++..++.+.++++..-+.+.+..+.. | +.|+..-.+++.|.
T Consensus 187 ~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq 266 (938)
T KOG1077|consen 187 EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQ 266 (938)
T ss_pred hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHH
Confidence 5667777889999988888999999999998888865544444433321 1 35666655555554
Q ss_pred HHHhhhCchhhhhhHHHHHHHhhhCCC----------hhHHHHHHHHHHHhhccCCcc-hhhhchHHHHHHhcCCCCHHH
Q 008806 189 KFAATVEPAHLKTDIMSIFEDLTQDDQ----------DSVRLLAVEGCAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRV 257 (553)
Q Consensus 189 ~l~~~~~~~~~~~~l~p~l~~~~~d~~----------~~vr~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~l~~d~~~~v 257 (553)
.. ..-++......+...+.+.++-.+ ..++.+.+.-...++-+++.+ .........+.+++.+....+
T Consensus 267 ~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~Ni 345 (938)
T KOG1077|consen 267 IY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNI 345 (938)
T ss_pred hC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccc
Confidence 33 111112223334444443333211 122222322223333333332 333445556666777888888
Q ss_pred HHHHHHHHHHHHHHhCC-CccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHH
Q 008806 258 RYMVANQLYELCEAVGP-EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV 335 (553)
Q Consensus 258 R~~~~~~l~~l~~~~~~-~~~~~~llp~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~v 335 (553)
|.-+.+.+..++..-.. +..+.+ ...++..++ +.|..+|+.|+.-|-.++..-..+ .++.-+.+.+...++.+
T Consensus 346 RYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak----~IV~elLqYL~tAd~si 420 (938)
T KOG1077|consen 346 RYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK----QIVAELLQYLETADYSI 420 (938)
T ss_pred hhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHH----HHHHHHHHHHhhcchHH
Confidence 88877777777654111 111112 455555565 778888888888777776643333 33344444455566667
Q ss_pred HHHHHHHHHhhhhhhCH
Q 008806 336 RSALASVIMGMAPLLGK 352 (553)
Q Consensus 336 r~~~~~~l~~l~~~~~~ 352 (553)
|+..+.-+.-+++.+..
T Consensus 421 reeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 421 REEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 76666555555554443
No 69
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.92 E-value=2e-05 Score=80.99 Aligned_cols=174 Identities=18% Similarity=0.215 Sum_probs=128.8
Q ss_pred HHHHHHH-hcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcch
Q 008806 11 IAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (553)
Q Consensus 11 i~~ll~~-L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 88 (553)
+..+-.+ +.+.+...|..|++.+=+.. ..|.+ ...+.|-+.. +...+.|+++..-..|..+++..+. ..-..+
T Consensus 20 ~~~~~sg~l~s~n~~~kidAmK~iIa~M-~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lLav 94 (757)
T COG5096 20 VAALSSGRLESSNDYKKIDAMKKIIAQM-SLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALLAV 94 (757)
T ss_pred HhhhccccccccChHHHHHHHHHHHHHH-hcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHHHH
Confidence 3444445 77878888888887654432 23332 4556666555 5688999999998888887775442 222344
Q ss_pred hHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHH-HHHH
Q 008806 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE-LRSI 167 (553)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~-l~~~ 167 (553)
+.+++=.+|+++.+|..|+..++.+ ....+...+++.++++.+|+...||..|+-++..++..-...+.+. ....
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~ 170 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDI 170 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHH
Confidence 5666777899999999999888665 3445667789999999999999999999999999987544445555 6778
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhh
Q 008806 168 YTQLCQDDMPMVRRSAASNLGKFAAT 193 (553)
Q Consensus 168 l~~ll~d~~~~Vr~~a~~~l~~l~~~ 193 (553)
+..++.|.+|.|..+|..++..+...
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 88899999999999998888877654
No 70
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=98.91 E-value=3.5e-08 Score=97.72 Aligned_cols=254 Identities=15% Similarity=0.191 Sum_probs=200.1
Q ss_pred CCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC
Q 008806 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN 292 (553)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~ 292 (553)
=.+.+-|..-...+....+.++.+.....++|.+...+.-.+ .-..+..-+-.+...+..+.+...++|.+.++++..
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~ 342 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP 342 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence 344455555666666666666766666778888776554333 111122223334444555556678999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCCh
Q 008806 293 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372 (553)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~ 372 (553)
+..+|.-.++.+..+...+.++...+.++|.+...+.|.+..+|+..+.++..++..++.......++..+-.+-.|++.
T Consensus 343 Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~ 422 (690)
T KOG1243|consen 343 DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHG 422 (690)
T ss_pred chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccC
Confidence 99999999999999999999998889999999999999999999999999999999999886667788888887789999
Q ss_pred HHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHH
Q 008806 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 452 (553)
Q Consensus 373 ~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~V 452 (553)
.+|....-+++++...+.+......+...+...+.|+...-|.+++..+......+.......+++|.+..+.-|++..|
T Consensus 423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v 502 (690)
T KOG1243|consen 423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV 502 (690)
T ss_pred cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence 99999999999998877665543444455666778899999999999988888888888888889999989999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 008806 453 RDAAANNLKRLAEEFG 468 (553)
Q Consensus 453 R~~a~~~l~~l~~~~~ 468 (553)
|..|..++........
T Consensus 503 r~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 503 RDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhHHHHHHHHHHhhhh
Confidence 9999999887776543
No 71
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=3.1e-05 Score=81.59 Aligned_cols=349 Identities=15% Similarity=0.145 Sum_probs=233.2
Q ss_pred hhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcC-hh----------hhhhhHHHHHHHHhcCCCcch------hhhHh
Q 008806 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMR-ES----------DLVDWYIPLVKRLAAGEWFTA------RVSAC 146 (553)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~-~~----------~~~~~~l~~l~~~~~~~~~~~------r~~~~ 146 (553)
...+.+++-..+. +.++.|...+.+|..+++... .. .....++|.+.+.-......- |...+
T Consensus 516 F~~la~~l~~al~-~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L 594 (1176)
T KOG1248|consen 516 FTDLAPILGAALL-KRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVL 594 (1176)
T ss_pred HHHHHHHHHHHHh-cchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence 3455665544433 344889999999999888641 11 112237788877765544433 33333
Q ss_pred hhhH-hhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HhhhCchhhhhhHHHHHHHhhhCCChhHHHH
Q 008806 147 GLFH-IAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF----AATVEPAHLKTDIMSIFEDLTQDDQDSVRLL 221 (553)
Q Consensus 147 ~~l~-~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l----~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~ 221 (553)
..+. ......+.+....+...+..+..|.+..++......+-.+ +....... ...+..+.-...+..+..++..
T Consensus 595 ~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK 673 (1176)
T KOG1248|consen 595 EIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKK 673 (1176)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHH
Confidence 3333 3334445556677778888888877655555444433333 33323222 2333333333345557889999
Q ss_pred HHHHHHHhhccCCcc----hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCcHH
Q 008806 222 AVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAE 295 (553)
Q Consensus 222 a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~llp~l~~ll~d~~~~ 295 (553)
+...|..+...-+.+ .....+...+..-.++.+...|...+.++..+.+..+.+.. ....+|-.+=.+++.+..
T Consensus 674 ~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~ 753 (1176)
T KOG1248|consen 674 AYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVK 753 (1176)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHH
Confidence 999999988772222 33455677777777788888999999999999998874432 234555555555888888
Q ss_pred HHHHHHHHHHHHHH--h---hCHH---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhC---HHhHHHhHHHHHH
Q 008806 296 VRIAAAGKVTKFCR--I---LNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFL 364 (553)
Q Consensus 296 vr~~a~~~l~~~~~--~---~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~p~l~ 364 (553)
-|+.+.+.|..++. . .|.+ ...+.+++.+...+.....+++..-+-++..+...++ .+.+...++..+.
T Consensus 754 aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~ 833 (1176)
T KOG1248|consen 754 ARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVC 833 (1176)
T ss_pred HHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 89999888888873 2 2322 3556777777766656666666654566666554333 2334667788888
Q ss_pred HhhCCCChHHHHHHHHHHHHhhhhhchhhH---HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhH
Q 008806 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 434 (553)
Q Consensus 365 ~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~---~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~ 434 (553)
.++....++++.+|+..+..++..+....+ .+.++|.+..+..|.+..+|..+-..+..+...+|.+.+.
T Consensus 834 ~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 834 LYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 889999999999999999999988876543 3678999999999989999999999999999999987654
No 72
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.85 E-value=1.3e-05 Score=79.82 Aligned_cols=348 Identities=14% Similarity=0.125 Sum_probs=202.8
Q ss_pred HHHHHHhcCccH---HHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-----cC-CCcHHHHHHHHHHhhccccccCC--
Q 008806 12 AVLIDELKNDDI---QLRLNSIRRLSTIARALGEERTRKELIPFLSE-----NN-DDDDEVLLAMAEELGVFIPYVGG-- 80 (553)
Q Consensus 12 ~~ll~~L~~~d~---~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-----~~-d~~~~vr~~~~~~l~~l~~~~~~-- 80 (553)
+.++..|.+++. .......+.+++++. .....+.+.+.+.+ +. ..+.+.-..+..++..+......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~---~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALST---SPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHC---ChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 456667776555 455566777777753 22334445555444 21 12445556666666655443221
Q ss_pred -----cchhh-cchhHHHhhhc-----cc--hhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhc----------CC
Q 008806 81 -----VEHAH-VLLPPLETLCT-----VE--ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA----------GE 137 (553)
Q Consensus 81 -----~~~~~-~l~~~l~~l~~-----~~--~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~----------~~ 137 (553)
..+.+ .++|.+.++.. +. ++.+=..+...+..++..++.+...+. +.-+..+.- +.
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-~~~~~~lf~~~~~~~~~~~~~ 157 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-LDELYSLFLSPKSFSPFQPSS 157 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHccccccCCCCccc
Confidence 11222 25555444331 11 245556677777778888877554433 322222221 11
Q ss_pred C----cchhhh--HhhhhHhhcCCCChHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHh
Q 008806 138 W----FTARVS--ACGLFHIAYPSAPDILKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 210 (553)
Q Consensus 138 ~----~~~r~~--~~~~l~~l~~~~~~~~~~~l~~~l~~l-l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~ 210 (553)
. ...|.. ...+++.+-+...-....+++..+.++ +...++..|..+++.++.+++..+++...+.++..+...
T Consensus 158 ~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~ 237 (415)
T PF12460_consen 158 STISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQS 237 (415)
T ss_pred cccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhh
Confidence 1 111211 122333333322211334455555554 344568999999999999998877665555666555544
Q ss_pred h-hCCChhHHHHHHHHHHHhhccC--CcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHH
Q 008806 211 T-QDDQDSVRLLAVEGCAALGKLL--EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 287 (553)
Q Consensus 211 ~-~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ 287 (553)
. .......|..+++.+..+++.+ ........+...+..++.| +.+...++++++-+....+ + + ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~-~-----~----l~ 305 (415)
T PF12460_consen 238 ISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSD-D-----V----LN 305 (415)
T ss_pred hcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcH-H-----h----cC
Confidence 4 5566677788888887777652 2222334456666666666 4567777777776653210 0 0 00
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH---HHhHHHHHH
Q 008806 288 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFL 364 (553)
Q Consensus 288 ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~p~l~ 364 (553)
+.....| +.+-.+.+...++|.+.+..++.+...|.....++..+.+..+.... .+.++|++.
T Consensus 306 --~~~~a~v------------klLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLl 371 (415)
T PF12460_consen 306 --KENHANV------------KLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLL 371 (415)
T ss_pred --ccccchh------------hhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 0111111 22334666788888888888777777888899999999988887654 467899999
Q ss_pred HhhCCCChHHHHHHHHHHHHhhhhh
Q 008806 365 SLLKDEFPDVRLNIISKLDQVNQVI 389 (553)
Q Consensus 365 ~~l~d~~~~VR~~a~~~l~~~~~~~ 389 (553)
+.|.-++.+++.+++.++..+...-
T Consensus 372 qsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 372 QSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 9998888899999999999887643
No 73
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.83 E-value=2.2e-06 Score=89.30 Aligned_cols=336 Identities=11% Similarity=0.040 Sum_probs=222.7
Q ss_pred HHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhh-hhHH
Q 008806 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIM 204 (553)
Q Consensus 126 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~l~ 204 (553)
++++...++..+....|....+++..+ ...+........+..+..-..+..-..++.++..++...+..... ..++
T Consensus 64 l~~~~~~~l~~~~~~~~~~~~~~~~~i---~~~~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~ 140 (815)
T KOG1820|consen 64 LLSFGLKCLDSKRVNIRDTKTQSLLRI---GKLEDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFI 140 (815)
T ss_pred eccchhhhcccccccccCcchhHHHHH---HHhhhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 556666666666566666666655555 111134555666666677777777777777777777766653322 2233
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhh-------chHHHHH----------------------HhcCCCCH
Q 008806 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA-------HILPVIV----------------------NFSQDKSW 255 (553)
Q Consensus 205 p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-------~ll~~l~----------------------~l~~d~~~ 255 (553)
|.+-.+. +-+||..+...+..+.++.|...... .++.-+. .-..+++|
T Consensus 141 ~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 217 (815)
T KOG1820|consen 141 KHVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNV 217 (815)
T ss_pred ccCcccc---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCCh
Confidence 3322222 67788888888888887665431100 0000000 00112222
Q ss_pred HHHHHHHHHHHHHHHH-----------hCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhHH
Q 008806 256 RVRYMVANQLYELCEA-----------VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHIL 321 (553)
Q Consensus 256 ~vR~~~~~~l~~l~~~-----------~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~ 321 (553)
..+...-....+.... +........+-+.+...+.+++|--|..|+..+...++.-+ .+...+.+.
T Consensus 218 ~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~ 297 (815)
T KOG1820|consen 218 KEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLG 297 (815)
T ss_pred hhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHH
Confidence 2221111111111000 00011123456677777889999999999999988777654 123344555
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH--HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHH
Q 008806 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (553)
Q Consensus 322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll 399 (553)
..+.-...|.|-.|-..++..+..++..++..+. ...+.|.++..++|....+|..+..++..++..... ..+.
T Consensus 298 ~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----~~~~ 373 (815)
T KOG1820|consen 298 ILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----SKMS 373 (815)
T ss_pred HHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----HHHH
Confidence 5666667899999999999999999999887642 456678899999999999999999999999884433 5567
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh----hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhH
Q 008806 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (553)
Q Consensus 400 ~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~----~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~ 471 (553)
+.+..++.+.++..|..+...+.......++. .-...++|.+....+|.+.+||.+|.++++.+...+|.+.
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888999999999999999999888887732 2345689999999999999999999999999999999653
No 74
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=0.00029 Score=73.13 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=105.4
Q ss_pred HHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC------C--CChHHHHHHHHHHHHhhhhhchhh-----HHhhHHHHHH
Q 008806 337 SALASVIMGMAPLLGKDATIEQLLPIFLSLLK------D--EFPDVRLNIISKLDQVNQVIGIDL-----LSQSLLPAIV 403 (553)
Q Consensus 337 ~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~------d--~~~~VR~~a~~~l~~~~~~~~~~~-----~~~~ll~~l~ 403 (553)
.++...+..++..-|++. .+.+++.+...++ . .++.-+.+|+..++.++..+-... +...+.+.+.
T Consensus 390 ~Aa~~~l~~~~~KR~ke~-l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKET-LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred HHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 456667777776666654 5667777777765 2 345567889999999998774332 2334555555
Q ss_pred HhhcCCCcHHHHHHHHHHHHHH-hhhChhhhHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCh--hHHhhhhhhh
Q 008806 404 ELAEDRHWRVRLAIIEYIPLLA-SQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQ 479 (553)
Q Consensus 404 ~~~~d~~~~vR~~~~~~l~~i~-~~~~~~~~~~~l~~~l~~~l~-D~~~~VR~~a~~~l~~l~~~~~~--~~~~~~i~p~ 479 (553)
-..+++---.|..+|..++.++ ..+.........+....+++. |++-.||-.|+-++..++.+... +...++|.|.
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 5667777789999999999998 445555555667777777777 99999999999999999987653 3345566666
Q ss_pred hhhhhhh
Q 008806 480 KSHVLDC 486 (553)
Q Consensus 480 l~~~l~~ 486 (553)
+.++++-
T Consensus 549 mq~lL~L 555 (1010)
T KOG1991|consen 549 MQELLKL 555 (1010)
T ss_pred HHHHHHH
Confidence 6666653
No 75
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.82 E-value=6.3e-06 Score=78.00 Aligned_cols=252 Identities=16% Similarity=0.104 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHHhhccCCcc-hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc------------------
Q 008806 217 SVRLLAVEGCAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT------------------ 277 (553)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~------------------ 277 (553)
.+|..+.+.+..++.+++-. ...-.+.-.+.....|..+.+...++..+.++...++.+..
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l 349 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML 349 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence 57888888888888776542 22233555556666777777777777777776665542110
Q ss_pred --------------------------------------ccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHH---H
Q 008806 278 --------------------------------------RMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPE---L 315 (553)
Q Consensus 278 --------------------------------------~~~llp~l~~ll~d~~-~~vr~~a~~~l~~~~~~~~~~---~ 315 (553)
.....+.+...+.|.+ .-++.+|+.+++.+.-+-+.. .
T Consensus 350 ~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~ 429 (728)
T KOG4535|consen 350 NGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVI 429 (728)
T ss_pred cCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHH
Confidence 1134455555555433 335556666555433222211 1
Q ss_pred HHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH-----HhHHHhHHHH----HHHhh---CCCChHHHHHHHHHHH
Q 008806 316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-----DATIEQLLPI----FLSLL---KDEFPDVRLNIISKLD 383 (553)
Q Consensus 316 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~p~----l~~~l---~d~~~~VR~~a~~~l~ 383 (553)
+.......+...+.|+.-.+|..++..++.|...+-. ......+... ++..- .-....||..+.++|+
T Consensus 430 fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLg 509 (728)
T KOG4535|consen 430 FVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALG 509 (728)
T ss_pred HHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 2233334455667788888888888888887664321 1112222221 11111 1234679999999999
Q ss_pred Hhhhhhchh-h-HHhhHHH-HHHHh----hcCCCcHHHHHHHHHHHHHHhh----hChhhhHHHHHHHHHHHccC-CchH
Q 008806 384 QVNQVIGID-L-LSQSLLP-AIVEL----AEDRHWRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQD-KVYS 451 (553)
Q Consensus 384 ~~~~~~~~~-~-~~~~ll~-~l~~~----~~d~~~~vR~~~~~~l~~i~~~----~~~~~~~~~l~~~l~~~l~D-~~~~ 451 (553)
.+.+.+.+- . -...++. ....+ .-..+..||.+++.+++.+.+. +....+...++|++..++.| .+..
T Consensus 510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFK 589 (728)
T KOG4535|consen 510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFK 589 (728)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccce
Confidence 988776421 0 0011111 11111 2234788999999999999875 23345667788988888776 6778
Q ss_pred HHHHHHHHHHHHHHHhC
Q 008806 452 IRDAAANNLKRLAEEFG 468 (553)
Q Consensus 452 VR~~a~~~l~~l~~~~~ 468 (553)
||..|+.+|..-.+..|
T Consensus 590 VRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 590 VRIRAAAALSVPGKREQ 606 (728)
T ss_pred EeehhhhhhcCCCCccc
Confidence 99999999887665544
No 76
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.4e-06 Score=83.84 Aligned_cols=264 Identities=16% Similarity=0.097 Sum_probs=143.6
Q ss_pred CCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCC
Q 008806 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254 (553)
Q Consensus 175 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~ 254 (553)
.+..-.-.+..++|-+-...|.+ +.+.+...+. ..+++.||..++-.++-.+-.... ..+...++..+...+
T Consensus 391 ~s~y~EGGalyAlGLIhA~hG~~-~~~yL~~~Lk---~~~~e~v~hG~cLGlGLa~mGSa~----~eiYe~lKevLy~D~ 462 (929)
T KOG2062|consen 391 GSGYKEGGALYALGLIHANHGRG-ITDYLLQQLK---TAENEVVRHGACLGLGLAGMGSAN----EEIYEKLKEVLYNDS 462 (929)
T ss_pred CCCccccchhhhhhccccCcCcc-HHHHHHHHHH---hccchhhhhhhhhhccchhccccc----HHHHHHHHHHHhccc
Confidence 34444556777888777776654 4444444332 234667788887766654433222 234555555554444
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcH
Q 008806 255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 333 (553)
Q Consensus 255 ~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~ 333 (553)
.-.-.++.-++|.+.-... ..+.+.-+.+...+.+ ..+.++..-.+. +..+|.+ +..-|.+.+++.|.++
T Consensus 463 AvsGEAAgi~MGl~mlGt~----~~eaiedm~~Ya~ETQHeki~RGl~vGia--L~~ygrq---e~Ad~lI~el~~dkdp 533 (929)
T KOG2062|consen 463 AVSGEAAGIAMGLLMLGTA----NQEAIEDMLTYAQETQHEKIIRGLAVGIA--LVVYGRQ---EDADPLIKELLRDKDP 533 (929)
T ss_pred hhhhhHHHHhhhhHhhCcC----cHHHHHHHHHHhhhhhHHHHHHHHHHhHH--HHHhhhh---hhhHHHHHHHhcCCch
Confidence 4344445555555543221 2344444444444443 223332222222 1223332 2344667777788888
Q ss_pred HHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhh-cCCCcH
Q 008806 334 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWR 412 (553)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~-~d~~~~ 412 (553)
-.|.+-+..+..--..-|.......+++ -...|.+.+||++|..++|-++.. .+..+|...+++ ++-|..
T Consensus 534 ilR~~Gm~t~alAy~GTgnnkair~lLh---~aVsD~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~H 604 (929)
T KOG2062|consen 534 ILRYGGMYTLALAYVGTGNNKAIRRLLH---VAVSDVNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPH 604 (929)
T ss_pred hhhhhhHHHHHHHHhccCchhhHHHhhc---ccccccchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChh
Confidence 8887766554433222233322222222 224677788888888888766541 133344444444 445778
Q ss_pred HHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 413 vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
||..++.++|-....-|... .+..+-.+..|++.-||+.|+-+++-|.-...
T Consensus 605 VRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 605 VRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred hhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 88888888877666655442 33344455668888888888888877765543
No 77
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.2e-05 Score=78.53 Aligned_cols=390 Identities=14% Similarity=0.140 Sum_probs=222.0
Q ss_pred CCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh-hhhhhhH---HHHHHH
Q 008806 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWY---IPLVKR 132 (553)
Q Consensus 57 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~~---l~~l~~ 132 (553)
...+.+++..+.+.+-.+ .+.++.+...+..++..-+-..+.+.++. +....+++..... .....++ ...+.+
T Consensus 30 ek~~~~~KIeamK~ii~~--mlnGe~~p~Llm~IiRfvlps~~~elKKL-ly~ywE~vPKt~~dgkl~~EMILvcna~Rk 106 (948)
T KOG1058|consen 30 EKGDDEVKIEAMKKIIAL--MLNGEDLPSLLMTIIRFVLPSRNHELKKL-LYYYWELVPKTDSDGKLLHEMILVCNAYRK 106 (948)
T ss_pred hcCChHHHHHHHHHHHHH--HHcCCCchHHHHHHhheeeccCchHHHHH-HHHHHHHccccCCCcccHHHHHHHHHHHhh
Confidence 344555555544333221 12345555555555555444555555543 3334445443333 2233332 344455
Q ss_pred HhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHH-hh
Q 008806 133 LAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LT 211 (553)
Q Consensus 133 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~-~~ 211 (553)
=+++++.-+|=...+.++.+- .++..+.+.|.+.++++++++.||+.|.-++..+-+... ....+.-.++.. +.
T Consensus 107 DLQHPNEyiRG~TLRFLckLk---E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 107 DLQHPNEYIRGSTLRFLCKLK---EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPELIESFLL 181 (948)
T ss_pred hccCchHhhcchhhhhhhhcC---cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHHHHHHHH
Confidence 567788888877777666553 356788999999999999999999999999988877632 222222222222 24
Q ss_pred hCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 008806 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291 (553)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d 291 (553)
.+.++.-+..|.-.|...- ++.-.+++...+.+ +.+-+........+.+...+..-+.+ ....+..+..++..
T Consensus 182 ~e~DpsCkRNAFi~L~~~D----~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~p~~--~~~~i~~i~~lL~s 254 (948)
T KOG1058|consen 182 TEQDPSCKRNAFLMLFTTD----PERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLANPAE--KARYIRCIYNLLSS 254 (948)
T ss_pred hccCchhHHHHHHHHHhcC----HHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcCHHH--hhHHHHHHHHHHhc
Confidence 5667777666665443322 22222222222211 11122334455556666666532211 24577888888888
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhc-cCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCC
Q 008806 292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 370 (553)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~ 370 (553)
+++.|+-.|+.++..+... ++.+. .-...+..++ ..++-.++.-...-+..+.. +.+...+.+.--++..|..+
T Consensus 255 tssaV~fEaa~tlv~lS~~--p~alk-~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~ 329 (948)
T KOG1058|consen 255 TSSAVIFEAAGTLVTLSND--PTALK-AAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSP 329 (948)
T ss_pred CCchhhhhhcceEEEccCC--HHHHH-HHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCcc
Confidence 8888888887777655432 22221 1112222222 33444555555555555552 22333444555567788889
Q ss_pred ChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhh---cCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccC
Q 008806 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 447 (553)
Q Consensus 371 ~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~---~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D 447 (553)
+-+||..++...-.++..-..+.+...+...+.+.. .+.+-..|+..++.+...+..++. +...++|.++..+.|
T Consensus 330 dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD 407 (948)
T KOG1058|consen 330 DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISD 407 (948)
T ss_pred cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhcc
Confidence 999999998877767665443332222222222221 345677899999999988865543 356789999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhC
Q 008806 448 KVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 448 ~~~~VR~~a~~~l~~l~~~~~ 468 (553)
.+..--...+..+....+.++
T Consensus 408 ~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 408 SNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred CCHHHHHHHHHHHHHHHHhCc
Confidence 877655555555555555554
No 78
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.74 E-value=8.6e-05 Score=76.42 Aligned_cols=412 Identities=15% Similarity=0.086 Sum_probs=218.4
Q ss_pred CCCCCCCcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccC
Q 008806 1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG 79 (553)
Q Consensus 1 ~~~~~~~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~ 79 (553)
|..++++..-+..++....+.|..++...---|...++.. |+.. -..++.++. +.|.|+++|..|.+.++.+ +
T Consensus 47 M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~-P~~~-lLavNti~kDl~d~N~~iR~~AlR~ls~l----~ 120 (757)
T COG5096 47 MSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK-PELA-LLAVNTIQKDLQDPNEEIRGFALRTLSLL----R 120 (757)
T ss_pred HhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-HHHH-HHHHHHHHhhccCCCHHHHHHHHHHHHhc----C
Confidence 4456677777888888888888888777655555555433 4332 344455555 8999999999999998875 3
Q ss_pred CcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhh-HHHHHHHHhcCCCcchhhhHhhhhHhhcCCCCh
Q 008806 80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW-YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (553)
Q Consensus 80 ~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~-~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 158 (553)
....++.+++.+....+|+++.||+.|+-++.++-+. +++..... ....+..+..|.++.+...|...+..+.+-...
T Consensus 121 ~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~ 199 (757)
T COG5096 121 VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAH 199 (757)
T ss_pred hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhh
Confidence 3467777888888999999999999999999888654 33344444 566777788899999988888888777665222
Q ss_pred HHHHHHHHHHHHhc-CCC---CHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC
Q 008806 159 ILKTELRSIYTQLC-QDD---MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (553)
Q Consensus 159 ~~~~~l~~~l~~ll-~d~---~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 234 (553)
.+.......+.++. .+. ..+++......|.......+. -.......+.--....+..+-..+++.+..+....+
T Consensus 200 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~--s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~ 277 (757)
T COG5096 200 GYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPD--SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLP 277 (757)
T ss_pred hHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCC--cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhc
Confidence 23333333333321 111 144444443333332222211 111111111112345667777777777777776655
Q ss_pred cchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---------------------------------hCCCccccch
Q 008806 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA---------------------------------VGPEPTRMDL 281 (553)
Q Consensus 235 ~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~---------------------------------~~~~~~~~~l 281 (553)
.........|.+..++..+ +.....++.....+.-. ........++
T Consensus 278 ~~~~~~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~ 356 (757)
T COG5096 278 SNNLFLISSPPLVTLLAKP-ESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQI 356 (757)
T ss_pred cccHHHhhccHHHHHHcCC-HHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHH
Confidence 5444444444444443333 22222222211111100 0001111235
Q ss_pred HHHHHHhcCC--CcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhcc---CCcHHHHHHH-----HHHHH---hhhh
Q 008806 282 VPAYVRLLRD--NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS---DSSQHVRSAL-----ASVIM---GMAP 348 (553)
Q Consensus 282 lp~l~~ll~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~---d~~~~vr~~~-----~~~l~---~l~~ 348 (553)
++-+.....+ -++++-..++++|+.+.... +.....++..+..++. -..|.+-..+ +..+. ...+
T Consensus 357 L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~--~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr 434 (757)
T COG5096 357 LLELIYYIAENHIDAEMVSEAIKALGDLASKA--ESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLR 434 (757)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhh
Confidence 5555555555 56666677778887776654 2223445555555555 2222221111 11110 1111
Q ss_pred hhCHHhHHHhHHHHH---HHhhC--CCChHHHHHH-----HHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHH
Q 008806 349 LLGKDATIEQLLPIF---LSLLK--DEFPDVRLNI-----ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 418 (553)
Q Consensus 349 ~~~~~~~~~~l~p~l---~~~l~--d~~~~VR~~a-----~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~ 418 (553)
.+..+ ..+.+.+.+ ...+. +..|.++... +..+++++.....- .+.++........+..-.++....
T Consensus 435 ~l~~~-~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~--~~~~l~~~~~~~~~E~levq~~Il 511 (757)
T COG5096 435 ILPNE-YPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRL--EPELLRIAISNFVDETLEVQYTIL 511 (757)
T ss_pred hcCCc-chhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhh--hHHHHHHHHHHhcccchHHHHHHH
Confidence 12222 011122222 22222 3357777777 55666655533211 123333444445566777777766
Q ss_pred HHHHHHHhh
Q 008806 419 EYIPLLASQ 427 (553)
Q Consensus 419 ~~l~~i~~~ 427 (553)
.....+...
T Consensus 512 ~~svkl~~~ 520 (757)
T COG5096 512 MSSVKLIAN 520 (757)
T ss_pred HHHHHHHHh
Confidence 655555443
No 79
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=0.00018 Score=73.05 Aligned_cols=416 Identities=16% Similarity=0.112 Sum_probs=221.8
Q ss_pred CCcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhcccc-ccCC----
Q 008806 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIP-YVGG---- 80 (553)
Q Consensus 6 ~~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~-~~~~---- 80 (553)
..++.+...+..=-++|+.+|..|.+.|..... ....--.++.++.+-+ -++.+|-+++..+.+.++ ....
T Consensus 2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~---q~~y~l~lL~Lv~~~~-~d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEG---QQNYPLLLLNLVANGQ-QDPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred ccHHHHHHHHHhcCCCCCccCchHHHHHHHhcc---CCCchHHHHHHHhccC-cChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 345556666655557889999999999987642 1222335555555522 167789999999988776 2222
Q ss_pred -----cchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCC
Q 008806 81 -----VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (553)
Q Consensus 81 -----~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 155 (553)
+...+.+..++..+.-.....+...-.+++.-+++.-- .+.++.++|-+..-.+..+..+-.++......+.++
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DF-P~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr 156 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDF-PDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKR 156 (960)
T ss_pred ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcccc-chhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 11122344444444444455677777777777765321 234667777777666665555555554444445444
Q ss_pred CChH-----HHHH--------------HHHHHHHhc--CCCCHHHHHHHHHHHHHHHhhhCc----------hhhhhhHH
Q 008806 156 APDI-----LKTE--------------LRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEP----------AHLKTDIM 204 (553)
Q Consensus 156 ~~~~-----~~~~--------------l~~~l~~ll--~d~~~~Vr~~a~~~l~~l~~~~~~----------~~~~~~l~ 204 (553)
...+ .+.+ ++....+++ .+.+..--+.....+--+++.+-. ++-.+.-+
T Consensus 157 ~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM 236 (960)
T KOG1992|consen 157 YRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWM 236 (960)
T ss_pred cCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHH
Confidence 3222 1111 111122222 122222111122222222322211 22233444
Q ss_pred HHHHHhhh--------C-CCh----hHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHhcCCCCHHHHH-----HHHHH
Q 008806 205 SIFEDLTQ--------D-DQD----SVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRY-----MVANQ 264 (553)
Q Consensus 205 p~l~~~~~--------d-~~~----~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vR~-----~~~~~ 264 (553)
+.+.+++. | ++. .+|...++.+.-.+....++ .+.+.++...-.++.+-++..|. .+.+.
T Consensus 237 ~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~F 316 (960)
T KOG1992|consen 237 GAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQF 316 (960)
T ss_pred HHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 55555443 1 222 45666666666555554432 12233333333344433322222 22333
Q ss_pred HHHHHHHhCC-----------------------------CccccchHHHHHHhcCCCcHH-HHHHHHHHHHHHHHhhCHH
Q 008806 265 LYELCEAVGP-----------------------------EPTRMDLVPAYVRLLRDNEAE-VRIAAAGKVTKFCRILNPE 314 (553)
Q Consensus 265 l~~l~~~~~~-----------------------------~~~~~~llp~l~~ll~d~~~~-vr~~a~~~l~~~~~~~~~~ 314 (553)
|..++..-.. +.+.+.-+.++-+-++-.|.+ -|.+|+.-+..+++.+..
T Consensus 317 Lt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~- 395 (960)
T KOG1992|consen 317 LTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEG- 395 (960)
T ss_pred HHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcc-
Confidence 3333322100 011112333333334333433 467888888888888743
Q ss_pred HHHHhHHHHHHH----hccC--CcHHHHHHHHHHHHhhhhhhCH---------------HhHHHhHHHHHHHhhCCCChH
Q 008806 315 LAIQHILPCVKE----LSSD--SSQHVRSALASVIMGMAPLLGK---------------DATIEQLLPIFLSLLKDEFPD 373 (553)
Q Consensus 315 ~~~~~l~~~l~~----l~~d--~~~~vr~~~~~~l~~l~~~~~~---------------~~~~~~l~p~l~~~l~d~~~~ 373 (553)
+....+-..+.. +..+ .+|+-+..++..+..++...+. +++...+.|-+..-=..+.+-
T Consensus 396 ~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pi 475 (960)
T KOG1992|consen 396 QVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPI 475 (960)
T ss_pred hhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccc
Confidence 233333333333 3344 5799999999988888754221 223344444443311245677
Q ss_pred HHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh
Q 008806 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (553)
Q Consensus 374 VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~ 428 (553)
+|.++++.+-.+-..+|++.. -.++|.+..+++.++.-+..-|+.++..+....
T Consensus 476 lka~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 476 LKADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred hhhcccceeeeecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Confidence 889998888888888888765 678999999999999999999999998876543
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.65 E-value=0.00045 Score=74.78 Aligned_cols=396 Identities=15% Similarity=0.105 Sum_probs=216.6
Q ss_pred hHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHH
Q 008806 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 168 (553)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l 168 (553)
..+...++.+...+|..|++++..+++.-+.--..+.+-..+..-..|.+..||.+|++++|..+-. .++...+....+
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~-~~e~~~qyY~~i 897 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS-IPELIFQYYDQI 897 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc-cHHHHHHHHHHH
Confidence 3344455677789999999999999875332122233444555667888999999999999976543 244566667777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHh--hccCCcch--hhhchHH
Q 008806 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL--GKLLEPQD--CVAHILP 244 (553)
Q Consensus 169 ~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l--~~~~~~~~--~~~~ll~ 244 (553)
.+-..|+...||+.+.+.+..++...+.=.....+.--+....+|++.++...+.+++..+ .+.-+... -...-++
T Consensus 898 ~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~ 977 (1692)
T KOG1020|consen 898 IERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKIS 977 (1692)
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhH
Confidence 7778899999999999999999987765333334444445557899888999998888654 22111000 0001111
Q ss_pred HH----HH---hcCCCCHHHHHHHHHHHHH--HHHHhCCC--ccccchHHHHHHhc------------CCCcHHHH-HHH
Q 008806 245 VI----VN---FSQDKSWRVRYMVANQLYE--LCEAVGPE--PTRMDLVPAYVRLL------------RDNEAEVR-IAA 300 (553)
Q Consensus 245 ~l----~~---l~~d~~~~vR~~~~~~l~~--l~~~~~~~--~~~~~llp~l~~ll------------~d~~~~vr-~~a 300 (553)
.. .. +..|..++.-..+.+.=.. ......+. ...+..+..+..++ .+++.++| .+.
T Consensus 978 ~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~ 1057 (1692)
T KOG1020|consen 978 LEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAY 1057 (1692)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHH
Confidence 11 11 1122222211111111000 00000000 00122333333222 22233444 355
Q ss_pred HHHHHHHHHhhCH---HHHHHhHHHHHHHhccC-CcHHHHHHHHHHHHhhhhhhC--HHhHHHhHHHHHHHhhCCCChHH
Q 008806 301 AGKVTKFCRILNP---ELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDV 374 (553)
Q Consensus 301 ~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~p~l~~~l~d~~~~V 374 (553)
+.+|..++...+. ......+.|++..-+.. ...++-+.++..+....+... ++.+...+-..+...+--.....
T Consensus 1058 lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~ 1137 (1692)
T KOG1020|consen 1058 LSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMAT 1137 (1692)
T ss_pred HHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHH
Confidence 6666666654221 12234566766554332 235666666666666655443 23344444444445443333444
Q ss_pred HHHHHHHHHHhhhhh--chhhHHhhHHHHHHHhh---c----CC----CcHHHHHHHHHHHHHHhhhC--------hh--
Q 008806 375 RLNIISKLDQVNQVI--GIDLLSQSLLPAIVELA---E----DR----HWRVRLAIIEYIPLLASQLG--------VG-- 431 (553)
Q Consensus 375 R~~a~~~l~~~~~~~--~~~~~~~~ll~~l~~~~---~----d~----~~~vR~~~~~~l~~i~~~~~--------~~-- 431 (553)
-..|+.+++.++... |.... ..+...+...+ + +. +...-...+.++|.++.++. +.
T Consensus 1138 V~~~vsCl~sl~~k~~~~~~~v-~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~ 1216 (1692)
T KOG1020|consen 1138 VVEAVSCLGSLATKRTDGAKVV-KACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFL 1216 (1692)
T ss_pred HHHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccch
Confidence 455667777776642 22221 22222221111 1 11 23444556778888887531 11
Q ss_pred ----hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhhh
Q 008806 432 ----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLDC 486 (553)
Q Consensus 432 ----~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~~ 486 (553)
...++++..+.-+..+...++|..|+.++|.++-....-+..+.+...+.+.+.+
T Consensus 1217 ~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~ 1275 (1692)
T KOG1020|consen 1217 QEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILAD 1275 (1692)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhh
Confidence 3345666677777888889999999999999997765544444555555554443
No 81
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=0.00054 Score=68.38 Aligned_cols=306 Identities=15% Similarity=0.157 Sum_probs=176.5
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcchhhcchhH
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 90 (553)
++.+...|.|.|+..-.-|++.++.++..--.+....++-.++ ...+..+-||+.+|-++-.+.+..++-.....-..-
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlL-vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~r 191 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLL-VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQR 191 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHH-hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHH
Confidence 4556677778888877888888888764333333334444333 345566789999999988877765442222111222
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHH---hc----C-CC--------cchhhhHhhhhHhhcC
Q 008806 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL---AA----G-EW--------FTARVSACGLFHIAYP 154 (553)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~---~~----~-~~--------~~~r~~~~~~l~~l~~ 154 (553)
+..+++|.+-.|-.++...+..+++..+++. ..-+.+.+.++ .. | .+ +=...-.++++... +
T Consensus 192 iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p 269 (938)
T KOG1077|consen 192 IVHLLDDQHMGVVTAATSLIEALVKKNPESY-KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-P 269 (938)
T ss_pred HHHHhCccccceeeehHHHHHHHHHcCCHHH-hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-C
Confidence 3355667777777777777777787776532 22222222221 11 1 00 10111122222222 2
Q ss_pred CCChH-HHHHHHHHHHHh---cCCC-------CHHHHHHHHHHHHHHHhhhCc-hhhhhhHHHHHHHhhhCCChhHHHHH
Q 008806 155 SAPDI-LKTELRSIYTQL---CQDD-------MPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLA 222 (553)
Q Consensus 155 ~~~~~-~~~~l~~~l~~l---l~d~-------~~~Vr~~a~~~l~~l~~~~~~-~~~~~~l~p~l~~~~~d~~~~vr~~a 222 (553)
...+. .+..+...+... .+++ ...++.+++-..-.++-++++ +.........+-+++.+.+.++|..|
T Consensus 270 ~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLa 349 (938)
T KOG1077|consen 270 TPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLA 349 (938)
T ss_pred CCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhh
Confidence 22211 333333333333 3321 122333333333344444443 34555666677778899999999999
Q ss_pred HHHHHHhhccCCc-chhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHH
Q 008806 223 VEGCAALGKLLEP-QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300 (553)
Q Consensus 223 ~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a 300 (553)
++.+..++..-.. +....+ ...+...++ +.+-.+|+.++..|-.+|..-. .+.++.-+++.+...++.+|...
T Consensus 350 LEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~sireei 424 (938)
T KOG1077|consen 350 LESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIREEI 424 (938)
T ss_pred HHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHHHHH
Confidence 9998888765222 333344 455555555 8888899999999998885422 24577888888888889999988
Q ss_pred HHHHHHHHHhhCHH--HHHHhHHHHH
Q 008806 301 AGKVTKFCRILNPE--LAIQHILPCV 324 (553)
Q Consensus 301 ~~~l~~~~~~~~~~--~~~~~l~~~l 324 (553)
+--...+++.+..+ |+.+.++..+
T Consensus 425 vlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 425 VLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 87777777765443 5555555444
No 82
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.64 E-value=2.8e-06 Score=88.55 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=157.5
Q ss_pred hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC---cchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Q 008806 198 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE---PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274 (553)
Q Consensus 198 ~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~ 274 (553)
++...+-+.+...+.+.+|.-|..|++.+..+.+.-+ ...+...+...+.....|.+-.|-..++..|..++..++.
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 4445667778888899999999999999887776544 1233344666677788899999999999999999999886
Q ss_pred Ccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH
Q 008806 275 EPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 352 (553)
Q Consensus 275 ~~~--~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (553)
.+. ...+.|.++..+.|..+.+|.++..++..++...+ ...+.+.+...+.+.++..|..+...+.......++
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 542 24578999999999999999999999998887443 466778888899999999999998888888777763
Q ss_pred ----HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH
Q 008806 353 ----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (553)
Q Consensus 353 ----~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~ 394 (553)
......+.|.+....+|.+.+||.++..+++.+...+|.+.+
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~ 450 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVF 450 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 234678899999999999999999999999999999997654
No 83
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.62 E-value=0.0011 Score=68.17 Aligned_cols=173 Identities=16% Similarity=0.175 Sum_probs=111.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH---HHhHHHHHHHhh
Q 008806 291 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLL 367 (553)
Q Consensus 291 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~p~l~~~l 367 (553)
|..+-+|..|+.++..+++.---..+.+.++..+.++..+.+..+-.....+++..++. ++++. ...+.|.+..++
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLF 580 (1005)
T ss_pred CCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHH
Confidence 34455666666666655522111234566777777888888888888888888888764 33332 345666655554
Q ss_pred --CCCChHHHHHHHHHHHHhhh---hhchhhHHhhHHHHHHHhhcCCC----cHHHHHHHHHHHHHHhhhChh---hhHH
Q 008806 368 --KDEFPDVRLNIISKLDQVNQ---VIGIDLLSQSLLPAIVELAEDRH----WRVRLAIIEYIPLLASQLGVG---FFDD 435 (553)
Q Consensus 368 --~d~~~~VR~~a~~~l~~~~~---~~~~~~~~~~ll~~l~~~~~d~~----~~vR~~~~~~l~~i~~~~~~~---~~~~ 435 (553)
..+++.|-..+-..+.++++ ++|+ +....+|.+...+..++ ...-..++..+..+.+.-.+. .+..
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 22345666665555555554 3444 34778999998887665 445667788888777765442 3556
Q ss_pred HHHHHHHHH-ccCCchHHHHHHHHHHHHHHHH
Q 008806 436 KLGALCMQW-LQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 436 ~l~~~l~~~-l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
+.+|.+.++ +...+.++-+.+-+||..++..
T Consensus 659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 659 YAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 778888775 4456678888999999988875
No 84
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=5.7e-05 Score=76.06 Aligned_cols=54 Identities=22% Similarity=0.149 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 409 ~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
.|..+|.+++.++..++ .+.....+.+.-.+.+++.|.+.+||..|--.+..+-
T Consensus 478 En~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 478 ENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 46778888888888887 4444445556666778888999999998888877766
No 85
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.58 E-value=2.8e-06 Score=84.98 Aligned_cols=231 Identities=16% Similarity=0.154 Sum_probs=174.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhcc-CC
Q 008806 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DS 331 (553)
Q Consensus 253 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~-d~ 331 (553)
.++.-+..+.+.|..+...++.......++|.+...+.+.. ..-..+-.+-.+.+..+...+...++|.+....+ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 44555677888888888888777666788999988875542 1112222333344444555667788888888776 55
Q ss_pred cHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhh-cCCC
Q 008806 332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRH 410 (553)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~-~d~~ 410 (553)
+..++..+++-...|.+...++.+.+.++|++...++|.+..+.+.++..++.+.+.+....+.+.++|.+..+. ...+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 567888888889999999999999999999999999999999999999999999999998888899999998875 4567
Q ss_pred cHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh--ChhHHhhhhhhhhhhhhhh
Q 008806 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQKSHVLDC 486 (553)
Q Consensus 411 ~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~--~~~~~~~~i~p~l~~~l~~ 486 (553)
..++.+++.|++.+++.++.....+.+.|.+ +..+-+++.+....+.....+.-.. |.+...+.++|.+..+...
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~-~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPIL-KCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhc
Confidence 8899999999999998888877776666655 5555555666666666665554332 3355557788887766543
No 86
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.56 E-value=0.00026 Score=70.57 Aligned_cols=303 Identities=15% Similarity=0.147 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHHHHHhhcChhh--------hhhhHHHHHHHHhcC-----CC--cchhhhHhhhhHhhcCCCChHHHHH
Q 008806 99 ETCVRDKAVESLCRIGSQMRESD--------LVDWYIPLVKRLAAG-----EW--FTARVSACGLFHIAYPSAPDILKTE 163 (553)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~--------~~~~~l~~l~~~~~~-----~~--~~~r~~~~~~l~~l~~~~~~~~~~~ 163 (553)
+...-...+.++..+.+....+. ....++|.+.+..-. .+ +.+-..+..+++.+...++.+..+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44455667777777765432211 112256666554421 11 3444556677888888888886666
Q ss_pred HHHHHHHhcC----------CCC--HHHHHHHHHHHHHHHhhhCchhhh---hhHHHHHHHh-hhCCChhHHHHHHHHHH
Q 008806 164 LRSIYTQLCQ----------DDM--PMVRRSAASNLGKFAATVEPAHLK---TDIMSIFEDL-TQDDQDSVRLLAVEGCA 227 (553)
Q Consensus 164 l~~~l~~ll~----------d~~--~~Vr~~a~~~l~~l~~~~~~~~~~---~~l~p~l~~~-~~d~~~~vr~~a~~~l~ 227 (553)
++..+..+.- +.. +........-+..+...++++... ..++..+..+ .+.+++..|..+.+.+.
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la 215 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA 215 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 6655555433 111 112233333344444455543332 2344444333 34455888999999999
Q ss_pred HhhccCCcchhhhchHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCCcHHHHHHHHHHH
Q 008806 228 ALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304 (553)
Q Consensus 228 ~l~~~~~~~~~~~~ll~~l~~l~-~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l 304 (553)
.+...++.+...+.++..+.... .......|....+.+.-+.+++- .......++..+.+++.| +++...+++++
T Consensus 216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 98888766554444444444433 33444455556666555555431 111123567777777777 46677777777
Q ss_pred HHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008806 305 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (553)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~ 384 (553)
+.+.... +.+.+. ..+..|| .+=++.+...++|.+.+..++.+.+.|...+.+|..
T Consensus 294 ~il~~d~--~~~l~~----------~~~a~vk------------lLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 294 GILLSDS--DDVLNK----------ENHANVK------------LLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred hhHhcCc--HHhcCc----------cccchhh------------hHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 7655431 111111 1111111 111222344567777777777666678888888888
Q ss_pred hhhhhchhhHH---hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhh
Q 008806 385 VNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (553)
Q Consensus 385 ~~~~~~~~~~~---~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~ 427 (553)
+.+.+..+.+. +.++|.+.+.+.-++..++.+++.++..+...
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 87776654432 56777777777777777777777777766644
No 87
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00027 Score=71.38 Aligned_cols=283 Identities=13% Similarity=0.126 Sum_probs=166.7
Q ss_pred hhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc
Q 008806 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD 280 (553)
Q Consensus 201 ~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 280 (553)
..+.|++...+.+....|-..|..++..+....+.+. ......++.+++.+....|.++.+.|.+++...+.... .
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--~ 319 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--V 319 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--c
Confidence 3567777777888888888888877777665544321 12455666778888889999999999999987554321 1
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHH
Q 008806 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360 (553)
Q Consensus 281 llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 360 (553)
--+-+-.+..|.+-.+ +..++..+.+. |.+.-.+.++..+..+..|-+..-+..+..++..++..++... ..++
T Consensus 320 cN~elE~lItd~NrsI---at~AITtLLKT-G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~m 393 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSI---ATLAITTLLKT-GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVMM 393 (865)
T ss_pred cchhHHhhhcccccch---hHHHHHHHHHh-cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHHH
Confidence 1233445666776444 33444444443 3343345666666666665555555556666667776666553 3456
Q ss_pred HHHHHhhC-CCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHH
Q 008806 361 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439 (553)
Q Consensus 361 p~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~ 439 (553)
+.+..+|+ ++..+-+.+...++-.++...... ....+..|.++..|.. .+.-+...++.+++-.....-....+.
T Consensus 394 ~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir 469 (865)
T KOG1078|consen 394 NFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIR 469 (865)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhH
Confidence 77777775 455677788888877777643222 2444555666665543 344455555555544332221122222
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhhhhcccccchhhhhh
Q 008806 440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLDCCQWSLMHQKTEYL 499 (553)
Q Consensus 440 ~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~~~~~~~~~~~~~~~ 499 (553)
.+....-=.+..||.+|..++.++. .+.....+.|.-.+...+.|.+...+.....|+
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l 527 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYL 527 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHH
Confidence 2323222246689999999999998 443333455555566666655555554444443
No 88
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00066 Score=69.06 Aligned_cols=481 Identities=14% Similarity=0.113 Sum_probs=246.7
Q ss_pred CcCcHHHHHHHhc-CccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcH----HHHHHHHHHhhccccccCC
Q 008806 7 PLYPIAVLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD----EVLLAMAEELGVFIPYVGG 80 (553)
Q Consensus 7 ~~~~i~~ll~~L~-~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~----~vr~~~~~~l~~l~~~~~~ 80 (553)
.-+.|..++-.++ +........-.+++..++++--|+. |+.|+|-+.. .+..+- .|+..+-..+.+.-.....
T Consensus 85 ~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~k-WptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrS 163 (960)
T KOG1992|consen 85 DREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDK-WPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRS 163 (960)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchh-hHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccccc
Confidence 3445666554444 5555566666677888876655544 9999999888 554443 3444443344443333333
Q ss_pred cchhhc-----------chhHHHh---hh--ccchhHHHHHHHHHHHHHHhhcC-------hhhhh---hhHHHHHHHHh
Q 008806 81 VEHAHV-----------LLPPLET---LC--TVEETCVRDKAVESLCRIGSQMR-------ESDLV---DWYIPLVKRLA 134 (553)
Q Consensus 81 ~~~~~~-----------l~~~l~~---l~--~~~~~~vR~~a~~~l~~l~~~~~-------~~~~~---~~~l~~l~~~~ 134 (553)
+..|.+ +..++.+ +. .+.+...-.....++.-+++.+- ++.++ +..++.+.+++
T Consensus 164 daL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l 243 (960)
T KOG1992|consen 164 DALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLL 243 (960)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHH
Confidence 222221 1112221 11 11222222223333333333221 22232 23555555554
Q ss_pred cCCC-------------cchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHHhh
Q 008806 135 AGEW-------------FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRS-----AASNLGKFAAT 193 (553)
Q Consensus 135 ~~~~-------------~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~Vr~~-----a~~~l~~l~~~ 193 (553)
.-+. ..+|...|+++...+.+-.++ +..+++...-.|+.+.++..|.. +.+-|..+++.
T Consensus 244 ~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r 323 (960)
T KOG1992|consen 244 TYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR 323 (960)
T ss_pred hccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh
Confidence 4111 245667777776666554444 44555655556666554433332 22333333321
Q ss_pred h------Cchhhhhh-----------------------HHHHHHHhhhCC-ChhHHHHHHHHHHHhhccCCcc---hhhh
Q 008806 194 V------EPAHLKTD-----------------------IMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ---DCVA 240 (553)
Q Consensus 194 ~------~~~~~~~~-----------------------l~p~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~---~~~~ 240 (553)
- ..+.+... -+.++.+.++.. .++-|.+|++.+..+++.+... .+..
T Consensus 324 ~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~ 403 (960)
T KOG1992|consen 324 PHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS 403 (960)
T ss_pred hhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 1 11111111 222233333222 2355788899999999887432 1122
Q ss_pred chHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCC-----Ccc----------ccchHHHHHHhcCCCcHHHHHHHHHH
Q 008806 241 HILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGP-----EPT----------RMDLVPAYVRLLRDNEAEVRIAAAGK 303 (553)
Q Consensus 241 ~ll~~l~~l~~d--~~~~vR~~~~~~l~~l~~~~~~-----~~~----------~~~llp~l~~ll~d~~~~vr~~a~~~ 303 (553)
++-..+.+...+ .+|+-+..+...+..++..-+. ..+ ...++|.+..--..+.+-++..+++.
T Consensus 404 ~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy 483 (960)
T KOG1992|consen 404 EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKY 483 (960)
T ss_pred HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccce
Confidence 233333334444 4688777777666666543211 111 11233333221113346677777777
Q ss_pred HHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh--------hCHHhHHHhHHHHHHHhh---CCCCh
Q 008806 304 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL--------LGKDATIEQLLPIFLSLL---KDEFP 372 (553)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~--------~~~~~~~~~l~p~l~~~l---~d~~~ 372 (553)
+-.+-..++++.. -.++|.+..+++.++.-|..-++.++..+-.. ++.+...+.+.+.+.+++ .-+..
T Consensus 484 ~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~ 562 (960)
T KOG1992|consen 484 IYTFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK 562 (960)
T ss_pred eeeecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc
Confidence 6666667777654 46789999999998888888888888877543 333333333444444444 11111
Q ss_pred HHHHHHHHHHHHhhhhhchhh------HHhhHHHHHHHhhcCCC-cHHHHHHHHHHHHHHhhhChhh------hHHHHHH
Q 008806 373 DVRLNIISKLDQVNQVIGIDL------LSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF------FDDKLGA 439 (553)
Q Consensus 373 ~VR~~a~~~l~~~~~~~~~~~------~~~~ll~~l~~~~~d~~-~~vR~~~~~~l~~i~~~~~~~~------~~~~l~~ 439 (553)
.--+-..+++-.+........ ....+...+.+..++++ +..---..+.++.+....+... +...++|
T Consensus 563 ~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p 642 (960)
T KOG1992|consen 563 AENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFP 642 (960)
T ss_pred cccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 222223333344433322221 11233333444555653 4444456667776666544433 6678899
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhhhhccc
Q 008806 440 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLDCCQWS 490 (553)
Q Consensus 440 ~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~~~~~~ 490 (553)
.+...++.+..+.--.+...++.+++..+. ...+.+.|.+..+++-.-|.
T Consensus 643 ~fq~Il~eDI~EfiPYvfQlla~lve~~~~-~ip~~~~~l~~~lLsp~lW~ 692 (960)
T KOG1992|consen 643 VFQTILSEDIQEFIPYVFQLLAVLVEHSSG-TIPDSYSPLFPPLLSPNLWK 692 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCchhHHHHHHHhcCHHHHh
Confidence 988888888888888889999999988765 22334444444444433444
No 89
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.53 E-value=6.7e-06 Score=82.30 Aligned_cols=233 Identities=17% Similarity=0.287 Sum_probs=172.0
Q ss_pred CCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcC-CC
Q 008806 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DK 253 (553)
Q Consensus 175 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~-d~ 253 (553)
.++.-+....+.|..+...++.......++|.+.+.+.++. ..-.....+-.|++..+...+..+++|.|....+ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 45556667777888888888877777888888877664431 1111233444555555556667778888887766 34
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhc-cCCc
Q 008806 254 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSS 332 (553)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~-~d~~ 332 (553)
..+++-...+-++.+.+....+...+.++|.+...++|.+..++..+++.+..+.+.++-..+.+.++|.+..+. ...+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 456777788888888888888888889999999999999999999999999999999987777889999998775 4567
Q ss_pred HHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhh--hchhhHHhhHHHHHHHhhcCCC
Q 008806 333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAEDRH 410 (553)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~--~~~~~~~~~ll~~l~~~~~d~~ 410 (553)
..|+..++.+++.+++.++...+.+.+.|++. ..+-.++.+..........+.-. .|.+...+.++|.+.-+...+.
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~-~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILK-CIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 89999999999999988887777777666554 44445677776666666655432 2335666888998887765543
No 90
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.53 E-value=1.9e-06 Score=65.29 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhhCHH--HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH--HHhHHHHHHHhhCCCC
Q 008806 296 VRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEF 371 (553)
Q Consensus 296 vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~ 371 (553)
.|.+++.+|..++..++.. ...+.++|.+...+.|++|+||..+++++..+++..+.+.. ...+.+.+.+++.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4777888888877766554 45678888889999999999999999999999988776543 3566777788889999
Q ss_pred hHHHHHHHHHHHHh
Q 008806 372 PDVRLNIISKLDQV 385 (553)
Q Consensus 372 ~~VR~~a~~~l~~~ 385 (553)
+.||.+| ..|..+
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9999887 444433
No 91
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.52 E-value=6.8e-07 Score=67.68 Aligned_cols=85 Identities=31% Similarity=0.403 Sum_probs=50.2
Q ss_pred HHHHHhh-CCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHH
Q 008806 361 PIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439 (553)
Q Consensus 361 p~l~~~l-~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~ 439 (553)
|.+.+.+ +|+++.||..++.+++.+.. +..+|.|..+++|+++.+|..++.+++.+. .+..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHH
Confidence 4445555 66666677766666664432 345666666666667777777766666553 233555
Q ss_pred HHHHHccC-CchHHHHHHHHHHH
Q 008806 440 LCMQWLQD-KVYSIRDAAANNLK 461 (553)
Q Consensus 440 ~l~~~l~D-~~~~VR~~a~~~l~ 461 (553)
.+..++.| ++..||..|+.+||
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 55555544 34455666666654
No 92
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.7e-05 Score=79.09 Aligned_cols=247 Identities=17% Similarity=0.154 Sum_probs=146.6
Q ss_pred CcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCC-Ch
Q 008806 138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QD 216 (553)
Q Consensus 138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~-~~ 216 (553)
++.+|..+|--+|.....-. ..++.+.+...+..++...-+++.-++|-+.-.-.+....++++.+ ..+. .+
T Consensus 427 ~e~v~hG~cLGlGLa~mGSa---~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Y----a~ETQHe 499 (929)
T KOG2062|consen 427 NEVVRHGACLGLGLAGMGSA---NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTY----AQETQHE 499 (929)
T ss_pred chhhhhhhhhhccchhcccc---cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHH----hhhhhHH
Confidence 45667777665554433221 2344555556565556656666667777666544444333333332 2332 22
Q ss_pred hH-HHHHHH-HHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh-cCCCc
Q 008806 217 SV-RLLAVE-GCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL-LRDNE 293 (553)
Q Consensus 217 ~v-r~~a~~-~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~l-l~d~~ 293 (553)
.+ |-.++. +|... +. ....-|.+.+++.|+++-.|....-+++.--..-|.. ..+.-++.. .+|.+
T Consensus 500 ki~RGl~vGiaL~~y----gr---qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----kair~lLh~aVsD~n 568 (929)
T KOG2062|consen 500 KIIRGLAVGIALVVY----GR---QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----KAIRRLLHVAVSDVN 568 (929)
T ss_pred HHHHHHHHhHHHHHh----hh---hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----hhHHHhhcccccccc
Confidence 22 322221 11111 22 2346778899999999999998766655433222322 233333333 57999
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhc-cCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCCh
Q 008806 294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372 (553)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~ 372 (553)
.+||++|.-+|+.++-. + +..+|.+.+++ ++.|++||..++.+++-.|..-|... .+.++..+..|+..
T Consensus 569 DDVrRaAVialGFVl~~-d-----p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~ 638 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFR-D-----PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVD 638 (929)
T ss_pred hHHHHHHHHHheeeEec-C-----hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHH
Confidence 99999999999876542 2 23334444444 56789999999999999988777654 45666777789999
Q ss_pred HHHHHHHHHHHHhhhhhchhhH--HhhHHHHHHHhhcCCCcH
Q 008806 373 DVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWR 412 (553)
Q Consensus 373 ~VR~~a~~~l~~~~~~~~~~~~--~~~ll~~l~~~~~d~~~~ 412 (553)
-||+.|+-+++-+.-....... ...+...+.+...|++..
T Consensus 639 fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 639 FVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred HHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 9999999998877543322110 033444455555555433
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.49 E-value=2.2e-06 Score=64.87 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh--hHHHHHHHHHHHccCCc
Q 008806 374 VRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKV 449 (553)
Q Consensus 374 VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~D~~ 449 (553)
.|.+.+.+|..++..++... ..+.++|.+...+.|++|+||..+++++..+++..+.+. +...+++.+.+++.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 36677777777777666542 337788888888899999999999999999988876654 34567888889999999
Q ss_pred hHHHHHHHHHHHHH
Q 008806 450 YSIRDAAANNLKRL 463 (553)
Q Consensus 450 ~~VR~~a~~~l~~l 463 (553)
.+||.+| +.|.++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 9999877 444444
No 94
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00064 Score=65.30 Aligned_cols=254 Identities=15% Similarity=0.110 Sum_probs=151.6
Q ss_pred hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchh--hhc-hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 008806 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC--VAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~-ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 278 (553)
.++..+..-..|++..+|..|+..++..+...+.+.. .+. +...+..+.++.+..|...+..+|..+.+........
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 3444445556789999999999999999988655422 222 4445566777778888888888888877765544433
Q ss_pred cchHHHH---HHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhHHHHHHH---hccCCcHHHHHHHHHHHHhhhhh
Q 008806 279 MDLVPAY---VRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKE---LSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 279 ~~llp~l---~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~---l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
..++++- ..+..|+++.+|.++...++.+....|.. .+.+.+...+.. .++|+++.+-.++-..+....+.
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~ 417 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPN 417 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCch
Confidence 4444443 45677888999999999999998877543 233333323333 34788888855554444444443
Q ss_pred hCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHH---HhhcCCCc-HHHHHHHHHHHHHH
Q 008806 350 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV---ELAEDRHW-RVRLAIIEYIPLLA 425 (553)
Q Consensus 350 ~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~---~~~~d~~~-~vR~~~~~~l~~i~ 425 (553)
++. +..-..+.+.+ |.+.. |..++.+ ..+..+.. +.+.++-.+. ...-..+| .+|.++...-+.+.
T Consensus 418 l~r----ke~~~~~q~~l-d~~~~-~~q~Fyn--~~c~~L~~--i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~v 487 (533)
T KOG2032|consen 418 LVR----KELYHLFQESL-DTDMA-RFQAFYN--QWCIQLNH--IHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSV 487 (533)
T ss_pred hHH----HHHHHHHhhhh-HHhHH-HHHHHHH--HHHHHHhh--hCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHH
Confidence 333 33333333333 32222 3332221 11111110 1111111111 11233466 78888888777776
Q ss_pred hhhChhh----hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 426 SQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 426 ~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
..+.+.. ....+...+..+..|+-++|+..+.++++.+..
T Consensus 488 d~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 488 DSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 6554432 223456667778899999999999999987764
No 95
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.49 E-value=1.4e-06 Score=65.91 Aligned_cols=85 Identities=28% Similarity=0.414 Sum_probs=56.8
Q ss_pred HHHHHhc-cCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHH
Q 008806 322 PCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (553)
Q Consensus 322 ~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~ 400 (553)
|.+.+.+ +|+++.+|..++.+++.+. .+...|.+..+++|+++.||..++.+++.+.. +..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 4455555 7777888888877777553 23457777777788888888888888887642 44566
Q ss_pred HHHHhhcCC-CcHHHHHHHHHHH
Q 008806 401 AIVELAEDR-HWRVRLAIIEYIP 422 (553)
Q Consensus 401 ~l~~~~~d~-~~~vR~~~~~~l~ 422 (553)
.|.+++.++ ++.+|..++.+++
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 677666554 4556777777664
No 96
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.43 E-value=0.0029 Score=65.41 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=135.2
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh---------------CHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHH
Q 008806 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL---------------NPELAIQHILPCVKELSSDSSQHVRSALASVIM 344 (553)
Q Consensus 280 ~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~---------------~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~ 344 (553)
.+.-.++.+++++ ++-..+...+..+.... -.+.+...++|.+.+..+.....+|.....+++
T Consensus 815 ~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 815 EIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred hHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence 3445555666553 34445555555544322 123566778899888877666677888888888
Q ss_pred hhhhhhCHHhH---HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh--hHHhhHHHHHHHhhcCCC---cHHHHH
Q 008806 345 GMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRH---WRVRLA 416 (553)
Q Consensus 345 ~l~~~~~~~~~---~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~~~~d~~---~~vR~~ 416 (553)
++....+.+.. .+.++|++.+.+.=++..||-.+..++..+....+.- ...+.+.|.+..+-.|.+ ..+|..
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHH
Confidence 88877766544 4678999999999999999999999999887655431 123788999998887776 579999
Q ss_pred HHHHHHHHHhhhChh---hhHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 008806 417 IIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (553)
Q Consensus 417 ~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l 463 (553)
|+++++.+....+.. .|.+.++..+.+.+.|+..-||..|+++=+..
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 999999999866554 46678888999999999999999999875443
No 97
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.42 E-value=5.2e-05 Score=66.59 Aligned_cols=217 Identities=19% Similarity=0.213 Sum_probs=109.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCC--ChhHHHHHHHHHHHhhccCCcchhhhchH
Q 008806 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (553)
Q Consensus 166 ~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 243 (553)
..+.+...|++...+...+.+||+... ..-+|.+...+.|+ .+-||..|.+++++++. +...
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~~ 102 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PESL 102 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhhH
Confidence 334444445555555666666665443 23455565556554 45678888888887762 3456
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--c----------cc---chHHHHHHhcCCC-cHHH-HHHHHHHHHH
Q 008806 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--T----------RM---DLVPAYVRLLRDN-EAEV-RIAAAGKVTK 306 (553)
Q Consensus 244 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~----------~~---~llp~l~~ll~d~-~~~v-r~~a~~~l~~ 306 (553)
+++.+..+|+...||.....++..+-..-+-.. . .+ .=+.-+-..+.|. .+.. |..|+-.|..
T Consensus 103 ~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn 182 (289)
T KOG0567|consen 103 EILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRN 182 (289)
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhc
Confidence 777777777777777776666655543211000 0 00 0011111111111 1111 2222222222
Q ss_pred HHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCC--CChHHHHHHHHHHHH
Q 008806 307 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQ 384 (553)
Q Consensus 307 ~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d--~~~~VR~~a~~~l~~ 384 (553)
.|.+ .-+..+...+.+.+.-.|..++.+++++-. +.-+|.+.+.|.| .++-||-.|+++|+.
T Consensus 183 ----~g~E----eaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGa 246 (289)
T KOG0567|consen 183 ----IGTE----EAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGA 246 (289)
T ss_pred ----cCcH----HHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHh
Confidence 2222 122333344455566666666666666542 2234555555543 345566666666666
Q ss_pred hhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHH
Q 008806 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (553)
Q Consensus 385 ~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~ 422 (553)
+.. +..++.|.+.++|+..-+|..+.-++.
T Consensus 247 Ia~--------e~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 247 IAD--------EDCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred hcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 654 445566666666666666666555554
No 98
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.40 E-value=0.00057 Score=71.01 Aligned_cols=361 Identities=16% Similarity=0.133 Sum_probs=201.4
Q ss_pred HHHHHHHHHHhhcChh--hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHH
Q 008806 105 KAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMV 179 (553)
Q Consensus 105 ~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~V 179 (553)
.++..|.++++...-+ -....+++.+.++++.++......+..++..+.-..... ....+++.+.+++..++..+
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 5566677776654322 223457888888888888888888888888877543322 44568899999999999999
Q ss_pred HHHHHHHHHHHHhhhC--chhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHh-cCCCC
Q 008806 180 RRSAASNLGKFAATVE--PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNF-SQDKS 254 (553)
Q Consensus 180 r~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l-~~d~~ 254 (553)
+..+.+.|.+++..-. ...+...++|.+..++.++ ..|..++..+..++..-... ......+|.+.++ ...++
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 9999999988875322 2334456788888888865 35556777777666421111 1122356766654 33344
Q ss_pred HHHHHHHHHHHHHHHHHhCC--CccccchHHHHHH-hcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhHHHHHHHhcc
Q 008806 255 WRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSS 329 (553)
Q Consensus 255 ~~vR~~~~~~l~~l~~~~~~--~~~~~~llp~l~~-ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~ 329 (553)
.++...++..+.+++..-.. ......-++.+++ .++..++- .++.+..++.+-|+. .+.+.+.|.+..+..
T Consensus 426 ~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~ 501 (708)
T PF05804_consen 426 EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFVDFIGDLAKIVSS 501 (708)
T ss_pred ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 55544444444443321100 0001122333333 23333321 223333333333222 222333332222222
Q ss_pred CCcHHHHHHHHHHHHhhhh-hhCHHhHH--HhHHHHHHHhhCCC--ChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHH
Q 008806 330 DSSQHVRSALASVIMGMAP-LLGKDATI--EQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAI 402 (553)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~-~~~~~~~~--~~l~p~l~~~l~d~--~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l 402 (553)
..++.....++..++.+.. ..+..... ..++|.+.+.|..+ ..++...++..+|.++..-.... ....+++.|
T Consensus 502 ~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~L 581 (708)
T PF05804_consen 502 GDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTL 581 (708)
T ss_pred CCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHH
Confidence 3344444344444444431 12222222 36889999988654 34577777777777664321111 235677888
Q ss_pred HHhhcCC--CcHHHHHHHHHHHHHHhhh-Chhhh--HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHH
Q 008806 403 VELAEDR--HWRVRLAIIEYIPLLASQL-GVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (553)
Q Consensus 403 ~~~~~d~--~~~vR~~~~~~l~~i~~~~-~~~~~--~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (553)
.+++... +...-...+.++..+..+- ..+.+ ...+..+++.++.|++.+||..+-.+|.-+++. ..+|.
T Consensus 582 i~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~-d~~w~ 655 (708)
T PF05804_consen 582 IELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY-DEEWA 655 (708)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-CHHHH
Confidence 8877654 3444455556666655431 11221 134667888999999999999999999988764 33443
No 99
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.39 E-value=5.1e-05 Score=65.74 Aligned_cols=110 Identities=21% Similarity=0.179 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHH
Q 008806 216 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE 295 (553)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~ 295 (553)
+.||..++-+++.++...+. ..+..+|.+...+.|+++.||..++..+..+... +--.....++..+..++.|++++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 56677777777777665543 3345666777777777777777777777776643 11112234556666777888888
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhc
Q 008806 296 VRIAAAGKVTKFCRILNPELAIQHILPCVKELS 328 (553)
Q Consensus 296 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~ 328 (553)
||..|...+..+....+++.+.+.+.+.+..+-
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 888888888877776555555555555555443
No 100
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.37 E-value=0.00026 Score=62.31 Aligned_cols=221 Identities=16% Similarity=0.147 Sum_probs=144.9
Q ss_pred HHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 008806 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 284 (553)
Q Consensus 207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d--~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~ 284 (553)
+.+...|++...+.....++++.. ...-+|.+...+.| ..+-||..++++||.+. .+..+++
T Consensus 41 i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~~~ 104 (289)
T KOG0567|consen 41 ITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESLEI 104 (289)
T ss_pred HHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhHHH
Confidence 333444444555555666665543 23467777776665 45789999999999886 2567888
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhH----------------HHHHHHhccCCc--HHHHHHHHHHHHhh
Q 008806 285 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI----------------LPCVKELSSDSS--QHVRSALASVIMGM 346 (553)
Q Consensus 285 l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l----------------~~~l~~l~~d~~--~~vr~~~~~~l~~l 346 (553)
+.+..+|+-..|+..+..++.++--.-+.+.. ... +..+...+.|.+ -.-|..+...+..+
T Consensus 105 l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~ 183 (289)
T KOG0567|consen 105 LTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI 183 (289)
T ss_pred HHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc
Confidence 99988999889998877777765321110000 001 111222222222 12234444444333
Q ss_pred hhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcC--CCcHHHHHHHHHHHHH
Q 008806 347 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLL 424 (553)
Q Consensus 347 ~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d--~~~~vR~~~~~~l~~i 424 (553)
. | +.-+..+...+.+++.-.|-.++..||++-. +.-+|.+.+.+.| .+.-||..+++++|.+
T Consensus 184 g---~-----EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 184 G---T-----EEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAI 247 (289)
T ss_pred C---c-----HHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhh
Confidence 3 1 2235567788888889999999999998865 4556777777665 4788999999999999
Q ss_pred HhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 425 ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 425 ~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
+ .+..++.+..++.|+++-||+.+.-+|...--..|
T Consensus 248 a--------~e~~~~vL~e~~~D~~~vv~esc~valdm~eyens 283 (289)
T KOG0567|consen 248 A--------DEDCVEVLKEYLGDEERVVRESCEVALDMLEYENS 283 (289)
T ss_pred c--------CHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhcc
Confidence 8 45678888899999999999999888875544333
No 101
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.002 Score=61.95 Aligned_cols=270 Identities=22% Similarity=0.182 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHhh--cChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH---HHHHHH-HHHHHhcCCC
Q 008806 102 VRDKAVESLCRIGSQ--MRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELR-SIYTQLCQDD 175 (553)
Q Consensus 102 vR~~a~~~l~~l~~~--~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~-~~l~~ll~d~ 175 (553)
-|..-...+.++... +++.....-++..+..-..|++..+|..|+..++..+...+.+ +.+.++ .++..++++.
T Consensus 233 ~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~ 312 (533)
T KOG2032|consen 233 GRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL 312 (533)
T ss_pred chHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC
Confidence 354444455555432 2222222233444444556788899999999999999987666 445554 4555577778
Q ss_pred CHHHHHHHHHHHHHHHhhhCchhhhhhHHHH---HHHhhhCCChhHHHHHHHHHHHhhccCCcch---hhh----chHHH
Q 008806 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSI---FEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CVA----HILPV 245 (553)
Q Consensus 176 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~---l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~----~ll~~ 245 (553)
+.+|.-.+.++|..+............+++. +..+..++++++|.+++..++.++...+... +.+ .+.|+
T Consensus 313 ~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~l 392 (533)
T KOG2032|consen 313 NEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPL 392 (533)
T ss_pred ccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccc
Confidence 8899999999999998887776666666665 3456789999999999999999998876532 211 22222
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHH
Q 008806 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK 325 (553)
Q Consensus 246 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 325 (553)
+ -.++|+.+.+-.+ .+.....+++....+.+-..+.+.+ |.+.. |..+.. ..++..+ ..+.|.+.
T Consensus 393 l-lhl~d~~p~va~A----Cr~~~~~c~p~l~rke~~~~~q~~l-d~~~~-~~q~Fy--n~~c~~L------~~i~~d~l 457 (533)
T KOG2032|consen 393 L-LHLQDPNPYVARA----CRSELRTCYPNLVRKELYHLFQESL-DTDMA-RFQAFY--NQWCIQL------NHIHPDIL 457 (533)
T ss_pred e-eeeCCCChHHHHH----HHHHHHhcCchhHHHHHHHHHhhhh-HHhHH-HHHHHH--HHHHHHH------hhhCHHHH
Confidence 2 2457888765443 2333333343333333333333333 33211 222221 1111111 12222221
Q ss_pred Hh-------ccCCcH-HHHHHHHHHHHhhhhhhCHHhH----HHhHHHHHHHhhCCCChHHHHHHHHHHHHhh
Q 008806 326 EL-------SSDSSQ-HVRSALASVIMGMAPLLGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (553)
Q Consensus 326 ~l-------~~d~~~-~vr~~~~~~l~~l~~~~~~~~~----~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~ 386 (553)
.+ +-+.+| .||.++...-..+...+.+... ...+...+..+.+|+.++|+..+.++++...
T Consensus 458 ~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 458 MLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 11 123456 6777776655555444333221 3345556666778888888888888887654
No 102
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.36 E-value=6.5e-05 Score=65.09 Aligned_cols=111 Identities=20% Similarity=0.193 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCCh
Q 008806 293 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372 (553)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~ 372 (553)
++.||.+++.+++.++..++. ..+..+|.+...+.|+++.||..++..+..+... |.-.....++..+..++.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence 467899999999988887653 3567778888889999999999999999888743 2222345566777788899999
Q ss_pred HHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhh
Q 008806 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406 (553)
Q Consensus 373 ~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~ 406 (553)
+||..|...+..+....+++.+...+.+.+..+.
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 9999999999999887666655444444444443
No 103
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.36 E-value=0.0027 Score=63.31 Aligned_cols=453 Identities=11% Similarity=0.028 Sum_probs=236.7
Q ss_pred HHHHHhcCccHHHHHHHhhhHHHHHHhhChHH---H---hhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCC---cch
Q 008806 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEER---T---RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG---VEH 83 (553)
Q Consensus 13 ~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~---~---~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~ 83 (553)
.++..+-+.|+.+-..|+.-.........+.. . ..+++-.+....+..++.....+..++.+.....+ +-.
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 34455667777664455544443332222211 1 11222223335666777777777777765442221 111
Q ss_pred hhcchhHHHhhhccch-hHHHHHHHHHHHHHHhhcChhh-----hhhhHHHHHHHHhc-CCCcchhhhHhhhhHhhcCCC
Q 008806 84 AHVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMRESD-----LVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSA 156 (553)
Q Consensus 84 ~~~l~~~l~~l~~~~~-~~vR~~a~~~l~~l~~~~~~~~-----~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~ 156 (553)
....++-+..+++++| ..++.+.++++.++.+..+..+ ....+++.+..+.. ......+..+..+. .+...-
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a-~~s~~~ 171 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAA-HLSSTK 171 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc-cccccc
Confidence 2234444556666777 8899999999999987653321 12234454444433 22222233222211 111111
Q ss_pred ChH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch----------hhhhhHHH--HHHHhhhCCChhHHHH
Q 008806 157 PDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----------HLKTDIMS--IFEDLTQDDQDSVRLL 221 (553)
Q Consensus 157 ~~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~----------~~~~~l~p--~l~~~~~d~~~~vr~~ 221 (553)
... +-..+.+.+.-+....+..+|.++..++..-+..+-++ .....+.+ ...++..|++.+.|..
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~ 251 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR 251 (678)
T ss_pred hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence 111 22233444444444557788988888888322221111 01122333 3456788999999988
Q ss_pred HHHHHHHhhccC-Ccchh--hhchHH---------HHHHhcCCCCHHHHHHHHHHHHH---HHHHhCCCccccchHHHHH
Q 008806 222 AVEGCAALGKLL-EPQDC--VAHILP---------VIVNFSQDKSWRVRYMVANQLYE---LCEAVGPEPTRMDLVPAYV 286 (553)
Q Consensus 222 a~~~l~~l~~~~-~~~~~--~~~ll~---------~l~~l~~d~~~~vR~~~~~~l~~---l~~~~~~~~~~~~llp~l~ 286 (553)
++.++..+...- +.+.. ...+.+ ....+..|+.|..-...+..+-. ++..+..........+...
T Consensus 252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ 331 (678)
T KOG1293|consen 252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT 331 (678)
T ss_pred HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence 888887766542 11110 000111 11224455555433322222222 2222222111122223333
Q ss_pred Hhc------CCCcHHHHHHHHHHHHHH---HHhhC---HHHHHHh-HHHHHHHhccCCcHHHHHHHHHHHHhhhhhhC--
Q 008806 287 RLL------RDNEAEVRIAAAGKVTKF---CRILN---PELAIQH-ILPCVKELSSDSSQHVRSALASVIMGMAPLLG-- 351 (553)
Q Consensus 287 ~ll------~d~~~~vr~~a~~~l~~~---~~~~~---~~~~~~~-l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~-- 351 (553)
+++ +...+..|..++...... +...+ .+++.+. ....+.......+..++.+++.++..++....
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 322 223334444333322111 11111 1111111 11111122223456777888777776655332
Q ss_pred -HHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch---hhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhh
Q 008806 352 -KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (553)
Q Consensus 352 -~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~ 427 (553)
......++...+.+++.|++..|...++.++..++-.+++ ..+....+..+.+...+++..+|..+..++..+.-.
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~ 491 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN 491 (678)
T ss_pred HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence 2222345666777888999999999999999998876664 345567788899999999999999999999988855
Q ss_pred hChhh----hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 428 LGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 428 ~~~~~----~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
..... ...-....+..+.+|++..|.+++...+..+.-.
T Consensus 492 ~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 492 CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 44432 1122234556788999999999999999887743
No 104
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.0013 Score=67.32 Aligned_cols=185 Identities=18% Similarity=0.173 Sum_probs=132.1
Q ss_pred cHHHHHHHhcCc-cHHHHHHHhhhHHHHHHhhChHHH-----hhhhhhhhhh-cC-CCcHHHHHHHHHHhhccccccCCc
Q 008806 10 PIAVLIDELKND-DIQLRLNSIRRLSTIARALGEERT-----RKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGV 81 (553)
Q Consensus 10 ~i~~ll~~L~~~-d~~~R~~a~~~l~~i~~~~~~~~~-----~~~ll~~l~~-~~-d~~~~vr~~~~~~l~~l~~~~~~~ 81 (553)
.+..|+.+|+.+ |+.....|+..|..+ ..+|.++. .+.++|.+.. ++ ..+.++...||++|..+++.++..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~-L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEM-LSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHH-HhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 578899999987 998888888877766 34555543 4678888877 43 467999999999999998866542
Q ss_pred c---hhhcchhHH-HhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCC
Q 008806 82 E---HAHVLLPPL-ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (553)
Q Consensus 82 ~---~~~~l~~~l-~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 157 (553)
- .-...+|.| .++..-+--.|.++++.++..+....+......--+-.+..++.=-+..+...|+.+..+++..+.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 112355654 456666666788999999999988877655443222222222211123456667777777777776
Q ss_pred hH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhC
Q 008806 158 DI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE 195 (553)
Q Consensus 158 ~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~ 195 (553)
.+ ++.+.+|.+..+++..+..+-+.++-++..++..+.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 55 788999999999999998888999999999888764
No 105
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.30 E-value=5.3e-05 Score=68.89 Aligned_cols=189 Identities=14% Similarity=0.073 Sum_probs=121.9
Q ss_pred chhHHHhhhccchhHHHHHHHHHHHHHHhhcChhh-hhh-hHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-HHHH
Q 008806 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-LVD-WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTE 163 (553)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~-~~~-~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~ 163 (553)
+-.++..+...+++.+++.+..+++..+.+-.... +.. -.++.+.++++++++.+|..|+.++..++...... ..+.
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 33444444556788899988888888765432222 222 37888889999999999988888888777654333 2222
Q ss_pred HHHHHHH-hcCC-CCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC--cchhh
Q 008806 164 LRSIYTQ-LCQD-DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQDCV 239 (553)
Q Consensus 164 l~~~l~~-ll~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~ 239 (553)
.++.+.+ ...+ .+..++.++.+.|..+.-.-.........+|.+..++..++..+|..+++.+..++..-. .+...
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~ 173 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLS 173 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 2333333 2333 467888888898888864433334444566777788888899999999999999886522 12223
Q ss_pred hchHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCC
Q 008806 240 AHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE 275 (553)
Q Consensus 240 ~~ll~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~~~ 275 (553)
.+.++.+..+++.. +..+...+...+..+...+..+
T Consensus 174 ~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 174 AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 33444555555543 4556666777777777776554
No 106
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=0.002 Score=64.61 Aligned_cols=221 Identities=19% Similarity=0.189 Sum_probs=148.6
Q ss_pred HHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCC---ChHHHHHHHHHHHHhcCCCCH
Q 008806 105 KAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA---PDILKTELRSIYTQLCQDDMP 177 (553)
Q Consensus 105 ~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~~~l~~~l~~ll~d~~~ 177 (553)
-.++.+..+...+++ +++...++-.+.+..+.++-.||.-++.++..+.... ++...+.+...+..-+.|..|
T Consensus 61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep 140 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP 140 (892)
T ss_pred HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc
Confidence 345556666666654 3344455556666677888899999999999887633 334677888888888999999
Q ss_pred HHHHHHHHHHHHHHhhhCchhhhhhHHHHHHH-hhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHH
Q 008806 178 MVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWR 256 (553)
Q Consensus 178 ~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~ 256 (553)
.||..|..+|..+-..-+++.. .+...+.. .-+|++++||.+++..+.. .+.-+|.+..-..|.+..
T Consensus 141 ~VRiqAv~aLsrlQ~d~~dee~--~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~a 208 (892)
T KOG2025|consen 141 NVRIQAVLALSRLQGDPKDEEC--PVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGA 208 (892)
T ss_pred hHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHH
Confidence 9999999999887742222211 22222222 2479999999999877643 133588899999999999
Q ss_pred HHHHHHHH-HHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHH-HHHhhCHHHHHHhHHHHHHHhccCCcHH
Q 008806 257 VRYMVANQ-LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK-FCRILNPELAIQHILPCVKELSSDSSQH 334 (553)
Q Consensus 257 vR~~~~~~-l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~-~~~~~~~~~~~~~l~~~l~~l~~d~~~~ 334 (553)
+|+.+.+. +.++ ...... .+.-+-.+...+.|.+..|+.++...+.. +.++.. ..++..+.++--+.+..
T Consensus 209 nRrlvY~r~lpki-d~r~ls--i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d-----gni~ElL~~ldvsnss~ 280 (892)
T KOG2025|consen 209 NRRLVYERCLPKI-DLRSLS--IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD-----GNILELLERLDVSNSSE 280 (892)
T ss_pred HHHHHHHHhhhhh-hhhhhh--HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc-----ccHHHHHHHhccccchH
Confidence 99887655 4444 211111 12455666777899999999999888753 333221 23444555554556668
Q ss_pred HHHHHHHHHHh
Q 008806 335 VRSALASVIMG 345 (553)
Q Consensus 335 vr~~~~~~l~~ 345 (553)
|+..++.++-.
T Consensus 281 vavk~lealf~ 291 (892)
T KOG2025|consen 281 VAVKALEALFS 291 (892)
T ss_pred HHHHHHHHHHH
Confidence 88888887766
No 107
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.00063 Score=61.74 Aligned_cols=316 Identities=17% Similarity=0.159 Sum_probs=175.1
Q ss_pred HhhhhHhhcCCC-ChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhh-------hhhHHHHHHHhhhCCCh
Q 008806 145 ACGLFHIAYPSA-PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL-------KTDIMSIFEDLTQDDQD 216 (553)
Q Consensus 145 ~~~~l~~l~~~~-~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~-------~~~l~p~l~~~~~d~~~ 216 (553)
++.++..+.... +......+.+.++.-+..++..|+.-+++.++.+.+..+...+ ...++|.+...+..+++
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 445555544432 2235566777888878888888888888888888887764332 24677888888889999
Q ss_pred hHHHHHHHHHHHhhccCCc-c-hhhhchHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhc
Q 008806 217 SVRLLAVEGCAALGKLLEP-Q-DCVAHILPV--IVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLL 289 (553)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~-~-~~~~~ll~~--l~~l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~llp~l~~ll 289 (553)
+|..+|++.+..++..-.. + .+.+.++.. +.++.-.-+.-+|.-+.+.+-++....+ .+.....++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 9999999999888753111 0 000111110 1111111122244444444444433211 1222345777776666
Q ss_pred CC-CcHHHHHHHHHHHHHHHHhhCHHHH--HHhHHHHHHHhc----cCCcHHHHHHHHHHHHhhhhhhCHHhHHH-----
Q 008806 290 RD-NEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELS----SDSSQHVRSALASVIMGMAPLLGKDATIE----- 357 (553)
Q Consensus 290 ~d-~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~l~----~d~~~~vr~~~~~~l~~l~~~~~~~~~~~----- 357 (553)
+- ++.-|+..+++-...+...-...++ .+.+++.++..+ .|+....|. +..+.+.+|++...+
T Consensus 223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfra-----lmgfgkffgkeaimdvseea 297 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRA-----LMGFGKFFGKEAIMDVSEEA 297 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHH-----HHHHHHHhcchHHhhcCHHH
Confidence 54 5667888888877776654322212 233555555544 344444442 333444445443321
Q ss_pred ------hHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh-hHHhhHHHHH---HHhhcCCC-cHHHHHHHHHHHHHHh
Q 008806 358 ------QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAI---VELAEDRH-WRVRLAIIEYIPLLAS 426 (553)
Q Consensus 358 ------~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-~~~~~ll~~l---~~~~~d~~-~~vR~~~~~~l~~i~~ 426 (553)
..+.-.+++..-.++...+.|+.++|.+....... .+...=-|.. ..-..|.| ..-..+++.++..|+.
T Consensus 298 icealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 298 ICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 11222334455567888999999999998765432 2221111222 22223333 3345677788877775
Q ss_pred hh--Chhhh-------------HH--------HHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 427 QL--GVGFF-------------DD--------KLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 427 ~~--~~~~~-------------~~--------~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
.+ .++.. .+ .=...+...++.+.+++|.++.+++..++.
T Consensus 378 elrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 378 ELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred cccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 43 11100 00 012344556788999999999999888775
No 108
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.27 E-value=7.3e-05 Score=67.98 Aligned_cols=180 Identities=14% Similarity=0.124 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCC-Ccc-ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhcc
Q 008806 252 DKSWRVRYMVANQLYELCEAVGP-EPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (553)
Q Consensus 252 d~~~~vR~~~~~~l~~l~~~~~~-~~~-~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 329 (553)
..++.+++.+..+++..+..-.. +.. .-..++.+..++.++++.+|..|+.++..+.............++.+++...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 44566666666666664431110 000 1236778888888888888888888887765544333223344455544332
Q ss_pred C--CcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhc--hhhHHhhHHHHHHHh
Q 008806 330 D--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVEL 405 (553)
Q Consensus 330 d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~--~~~~~~~ll~~l~~~ 405 (553)
+ -+..++.++++++..+.-.-.........+|.+..++..++..+|..+++.|..+...-. .+.+....++.+..+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~L 183 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSL 183 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHH
Confidence 2 356777888888888864433333334456777788888888888888888887765422 233444556666666
Q ss_pred hcCC-CcHHHHHHHHHHHHHHhhhChh
Q 008806 406 AEDR-HWRVRLAIIEYIPLLASQLGVG 431 (553)
Q Consensus 406 ~~d~-~~~vR~~~~~~l~~i~~~~~~~ 431 (553)
+..+ +..+-..++..+..+...+.++
T Consensus 184 f~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 184 FNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 6654 5667777778888887665443
No 109
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.25 E-value=0.00082 Score=69.37 Aligned_cols=145 Identities=18% Similarity=0.200 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC-CCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcH
Q 008806 334 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412 (553)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~ 412 (553)
.+|....-.++.+|-. .+......+|.+.+-|. .+...+|...+-+++.+|..+.. ..+..+|.+...+.|++.-
T Consensus 946 ~vra~~vvTlakmcLa--h~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~i 1021 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLA--HDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVI 1021 (1529)
T ss_pred HHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHH
Confidence 4666666666666633 33335567888887774 55678999999999999876532 3477899999999999999
Q ss_pred HHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhh
Q 008806 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHV 483 (553)
Q Consensus 413 vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~ 483 (553)
+|..++..+..+... |--.+...++=-++..+-|.+..+|.-|--+++.+...-.|.+....++..+..+
T Consensus 1022 VRrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1022 VRRQTIILLARLLQF-GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred HHHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHH
Confidence 999999988877642 1111112222223344568899999999999999998777666655555555543
No 110
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.25 E-value=0.00055 Score=68.49 Aligned_cols=257 Identities=18% Similarity=0.162 Sum_probs=136.6
Q ss_pred hhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHH
Q 008806 99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178 (553)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~ 178 (553)
+..+++.|...+..+.+++|. .....+..+..+++|++..+|..|+.-+..++.. .++....+..++.+|++.+++.
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~~~~v~kvaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-NPEHVSKVADVLVQLLQTDDPV 111 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---HH
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-HHHHHhHHHHHHHHHHhcccHH
Confidence 456677777788888777763 3445667777788888888888888888877765 3456788888999999988888
Q ss_pred HHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhh--hCCChhHHHHHHHHHHHhhccCCc------chhhhchHHHHHHhc
Q 008806 179 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT--QDDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFS 250 (553)
Q Consensus 179 Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~l~ 250 (553)
....+-++|..+...-+ ...+-.++..+. ..+++.+|+.+++.+..-...++. +.....+...+.+.+
T Consensus 112 E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL 187 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL 187 (556)
T ss_dssp HHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence 88888888888776432 223333333333 245678999999888544433333 233455777788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCC---Ccc---ccchHHHHHHhcC-C-----CcHHHHHHHHH----HHHHHHHhhCHH
Q 008806 251 QDKSWRVRYMVANQLYELCEAVGP---EPT---RMDLVPAYVRLLR-D-----NEAEVRIAAAG----KVTKFCRILNPE 314 (553)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~~~---~~~---~~~llp~l~~ll~-d-----~~~~vr~~a~~----~l~~~~~~~~~~ 314 (553)
.|....-=.. +-.+...+.- ..+ .+.+++.+.+... | .+++.-...+. ++..+.......
T Consensus 188 ~DVTaeEF~l----~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Ss 263 (556)
T PF05918_consen 188 QDVTAEEFEL----FMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSS 263 (556)
T ss_dssp TT--HHHHHH----HHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--H
T ss_pred HhccHHHHHH----HHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChH
Confidence 8855321111 2222222221 111 2356777664431 1 22222222222 233333333333
Q ss_pred HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh
Q 008806 315 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367 (553)
Q Consensus 315 ~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l 367 (553)
.+.+.+...+..-+.+-....|..+++.+..++...+... ...++|.+.+.|
T Consensus 264 kfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L 315 (556)
T PF05918_consen 264 KFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL 315 (556)
T ss_dssp HHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence 4444443333333344345667788999999999888765 455666666665
No 111
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=0.0051 Score=61.87 Aligned_cols=198 Identities=18% Similarity=0.144 Sum_probs=92.3
Q ss_pred HHHHhhhCCChhHHHHHHHHHHHhhccCC--cchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 008806 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 283 (553)
Q Consensus 206 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp 283 (553)
.+.+....++..||..++..+..+..... ++...+.+...+..-+.|..+.||..+..+|..+-..-+++ .-.+..
T Consensus 89 hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--e~~v~n 166 (892)
T KOG2025|consen 89 HLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--ECPVVN 166 (892)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--cccHHH
Confidence 33333444445555555555544443211 12222333444444445555555555555544443211111 112334
Q ss_pred HHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHH-HHhhhhhhCHHhHHHhHHH
Q 008806 284 AYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV-IMGMAPLLGKDATIEQLLP 361 (553)
Q Consensus 284 ~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~-l~~l~~~~~~~~~~~~l~p 361 (553)
.+..++ +|++++||.+|+.++.. .+.-+|.+..-+.|-+..+|..+-.- +..+ . +... ..+..+-
T Consensus 167 ~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d-~r~l-si~krv~ 233 (892)
T KOG2025|consen 167 LLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-D-LRSL-SIDKRVL 233 (892)
T ss_pred HHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-h-hhhh-hHHHHHH
Confidence 444333 46667777776665542 13344666666666666666555332 2222 1 1111 1223455
Q ss_pred HHHHhhCCCChHHHHHHHHHHHH-hhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 008806 362 IFLSLLKDEFPDVRLNIISKLDQ-VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (553)
Q Consensus 362 ~l~~~l~d~~~~VR~~a~~~l~~-~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~ 423 (553)
++...++|.+..||.++...+.. ..... ...++..|..+--+.+.+++..++.++-.
T Consensus 234 LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 234 LLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 66677777777777777666543 11111 12334444444334444666666666544
No 112
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=3.4e-05 Score=74.74 Aligned_cols=249 Identities=16% Similarity=0.104 Sum_probs=144.1
Q ss_pred HhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHH
Q 008806 145 ACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE 224 (553)
Q Consensus 145 ~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~ 224 (553)
+...+|.+...++.+..+.+.+.+..--....+.+...++-.+|-..-...+..+. ..+.+++..+....-.+|..
T Consensus 393 alyalGLI~Agfgr~~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSan~eiy----e~lKe~l~nD~a~~geAa~~ 468 (926)
T COG5116 393 ALYALGLIKAGFGREDTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSANREIY----EKLKELLKNDRALLGEAAVY 468 (926)
T ss_pred eeeeehhhccCcCcccHHHHHHHhCcccccccHHHHHHHHhhhcchhcccccHHHH----HHHHHHHhcchhhhhhhhhh
Confidence 34456666666666655555544444333345678887777777555443333333 33333333332222222222
Q ss_pred HHHHhhc-------------cCCc---c---------------hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 008806 225 GCAALGK-------------LLEP---Q---------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 273 (553)
Q Consensus 225 ~l~~l~~-------------~~~~---~---------------~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~ 273 (553)
..+-+.- ..+. + ...+..-..+.+++.|.++-.|...+-+++.--..-|
T Consensus 469 gMGl~mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTg 548 (926)
T COG5116 469 GMGLLMLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTG 548 (926)
T ss_pred ccceeeecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCC
Confidence 2211110 0000 0 0011233457778899999999887666554333223
Q ss_pred CCccccchHHHHHHh-cCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH
Q 008806 274 PEPTRMDLVPAYVRL-LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 352 (553)
Q Consensus 274 ~~~~~~~llp~l~~l-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~ 352 (553)
.. .++..++.. .+|.+.+||++|+-+|+.++-.- .+.++..+..+..+.|.+||...+.+++-.|..-|.
T Consensus 549 n~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 549 NL----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred cc----hhHhhhheeecccCchHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 22 233333333 67899999999999998765421 123333444455678999999999999999887776
Q ss_pred HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH--HhhHHHHHHHhhcCCC
Q 008806 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRH 410 (553)
Q Consensus 353 ~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~--~~~ll~~l~~~~~d~~ 410 (553)
+. ...++..+..|++.-||++|+-+++-+.-...++.. ...+...+.+...+++
T Consensus 620 ~~----a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 620 KV----ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred HH----HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 54 355667778899999999999998887654433221 1345555555555543
No 113
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.20 E-value=0.00069 Score=64.02 Aligned_cols=203 Identities=18% Similarity=0.199 Sum_probs=137.6
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHh-hCHHHH---HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhC----HHhHH
Q 008806 285 YVRLLRDNEAEVRIAAAGKVTKFCRI-LNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATI 356 (553)
Q Consensus 285 l~~ll~d~~~~vr~~a~~~l~~~~~~-~~~~~~---~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~ 356 (553)
.+..+.+.....|.+++..+..+... +-.+.+ ...+++.+.+.++.....-+..++.+++-++-.+| .+...
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 34445666788999999988877653 222222 34567777777766655667778888888887766 34456
Q ss_pred HhHHHHHHHhhCCCC--hHHHHHHHHHHHHhhhhhchhh-HHhhHHHHHHHh-----h-cC---------CCcHHHHHHH
Q 008806 357 EQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIVEL-----A-ED---------RHWRVRLAII 418 (553)
Q Consensus 357 ~~l~p~l~~~l~d~~--~~VR~~a~~~l~~~~~~~~~~~-~~~~ll~~l~~~-----~-~d---------~~~~vR~~~~ 418 (553)
+.+.|.+.+.++|.. ..+|..++.+|+.++-..+.+. -....+..+..+ . .+ ++..+..+++
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 788999999998865 4678888888887765544332 113223333311 1 11 2357999999
Q ss_pred HHHHHHHhhhChhh---hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh---hH---Hhhhhhhhhhhhhhhh
Q 008806 419 EYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EW---AMQHITPQKSHVLDCC 487 (553)
Q Consensus 419 ~~l~~i~~~~~~~~---~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~---~~---~~~~i~p~l~~~l~~~ 487 (553)
.+.+.+...++... .....+|.+..+|..++.+||.+|.+++.-+.+.... ++ ..+.+...+.++..+.
T Consensus 208 ~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 99999998887743 3345788899999999999999999999999876543 11 1245666666666654
No 114
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.17 E-value=1.3e-05 Score=64.64 Aligned_cols=106 Identities=21% Similarity=0.150 Sum_probs=66.2
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhhhhh---chhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh--h-
Q 008806 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--F- 432 (553)
Q Consensus 359 l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~---~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--~- 432 (553)
++|.+.+++++.++.+|..++.+++.++... ........++|.+.+++.++++++|..++.+++.++...+.. .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 4566666666666667777777766666531 111222366666777777777777777777777776543221 1
Q ss_pred hHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 433 ~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
....+++.+...+.+.+..+|..++.++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 12235677777777777778888887777664
No 115
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.16 E-value=0.015 Score=60.74 Aligned_cols=359 Identities=13% Similarity=0.065 Sum_probs=199.8
Q ss_pred HHHHHhcCCCcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc--hhhhhhH
Q 008806 129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDI 203 (553)
Q Consensus 129 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~l 203 (553)
-+..+...++.-.| .+..++..++.....+ ....+++.+.++++..+.++...+...|..++-.-.+ ......+
T Consensus 254 k~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 254 KLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 33344444444444 5567778888776554 4467889999999999999998888888887744332 2233467
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHhhccCCc--chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCCcccc
Q 008806 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPTRM 279 (553)
Q Consensus 204 ~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~--~~~~~~~ 279 (553)
+|.+.+++..++..++..++..+.+++..-.. ......++|.+..++.|++ .|..+...|..++..- ...+...
T Consensus 333 V~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~T 410 (708)
T PF05804_consen 333 VEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYT 410 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhc
Confidence 88888888888889999999999888743211 2223447888888888765 4455666666665321 1112223
Q ss_pred chHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCH-HHH-HHhHHHHHHHh-ccCCcHHHHHHHHHHHHhhhhhhCHHh-
Q 008806 280 DLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNP-ELA-IQHILPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDA- 354 (553)
Q Consensus 280 ~llp~l~~ll~d-~~~~vr~~a~~~l~~~~~~~~~-~~~-~~~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~~~- 354 (553)
..+|.+++++.. ++..+...++..+..++..-.. +.+ ...-++.+... ++..+ ..+++.+-.++.+-|+..
T Consensus 411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~ 486 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKE 486 (708)
T ss_pred chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHH
Confidence 467887776533 4455554443333333321110 000 11122333222 22222 223455666665544321
Q ss_pred -HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhh-hhchhh-HH-hhHHHHHHHhhcCC--CcHHHHHHHHHHHHHHhhh
Q 008806 355 -TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ-VIGIDL-LS-QSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQL 428 (553)
Q Consensus 355 -~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~-~~~~~~-~~-~~ll~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~ 428 (553)
+.+++.|++..+-..++.+....++.+|+.+.. .++... +. ..++|.+...+... ..++...++..+|.++..-
T Consensus 487 ~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 487 LFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 233333333322233344444444444444431 111111 22 47889998888654 3457777778888776432
Q ss_pred Chhh--hHHHHHHHHHHHccC--CchHHHHHHHHHHHHHHHHhChh-HH--hhhhhhhhhhhhhhhcccccch
Q 008806 429 GVGF--FDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPE-WA--MQHITPQKSHVLDCCQWSLMHQ 494 (553)
Q Consensus 429 ~~~~--~~~~l~~~l~~~l~D--~~~~VR~~a~~~l~~l~~~~~~~-~~--~~~i~p~l~~~l~~~~~~~~~~ 494 (553)
.... ....+++.+..+++. .+.+.-.+.+.++.++..+-... .. ...+...+.+++.|.+..++..
T Consensus 567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~ 639 (708)
T PF05804_consen 567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKV 639 (708)
T ss_pred HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHH
Confidence 1111 223467777777664 34677777888888887652211 11 1346677777777665554433
No 116
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.15 E-value=0.0001 Score=70.10 Aligned_cols=187 Identities=15% Similarity=0.123 Sum_probs=118.1
Q ss_pred CCCcCc---HHHHHHHhcC-ccHHHHHHHhhhHHHHHHhhCh----HHHhhhhhhhhhh-cCC-CcHHHHHHHHHHhhcc
Q 008806 5 DEPLYP---IAVLIDELKN-DDIQLRLNSIRRLSTIARALGE----ERTRKELIPFLSE-NND-DDDEVLLAMAEELGVF 74 (553)
Q Consensus 5 ~~~~~~---i~~ll~~L~~-~d~~~R~~a~~~l~~i~~~~~~----~~~~~~ll~~l~~-~~d-~~~~vr~~~~~~l~~l 74 (553)
++.+++ +..++.++.+ +....|..|+..|-.+.. .|. ++...+|+-.+.+ +.| .++..+..+.+.|+++
T Consensus 279 p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~-e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~m 357 (516)
T KOG2956|consen 279 PNSVDQSALVADLLKEISGSERASERKEALSELPKMLC-EGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREM 357 (516)
T ss_pred CCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHH-ccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHH
Confidence 344554 4455555554 456788888776665532 232 3333466655656 666 5667788888999988
Q ss_pred ccccCC--cchhh-cchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHh
Q 008806 75 IPYVGG--VEHAH-VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI 151 (553)
Q Consensus 75 ~~~~~~--~~~~~-~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~ 151 (553)
++.... .++.. .+...|.. ..|.++.|-..|.+.+......+.+......+.|.+.. .+...-.+++.++..
T Consensus 358 l~~Q~~~l~DstE~ai~K~Lea-a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 358 LTNQPARLFDSTEIAICKVLEA-AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTK 432 (516)
T ss_pred HHhchHhhhchHHHHHHHHHHH-HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHH
Confidence 875443 12222 23334443 34555554444555544444443343333445566654 333445566778899
Q ss_pred hcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch
Q 008806 152 AYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA 197 (553)
Q Consensus 152 l~~~~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~ 197 (553)
+++.++.+ ...++.|.+.+..++.+..||+.+..+|..+...+|.+
T Consensus 433 l~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 433 LFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred HHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 99998887 66788999999999999999999999999999988843
No 117
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00043 Score=70.74 Aligned_cols=214 Identities=19% Similarity=0.247 Sum_probs=143.3
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHH
Q 008806 248 NFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK 325 (553)
Q Consensus 248 ~l~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 325 (553)
..+.|+...+|..+...+..+++.-... .....++.+....++|.++-|-.+|++.+..+++..+ +.++|.+.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~ 808 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLS 808 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHH
Confidence 3456777778999999998888754222 1234689999999999999999999999888888754 34445544
Q ss_pred Hh-c---cCCcHHHHHHHHHHHHhhhhhhCHHhH--HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhc---hhhHHh
Q 008806 326 EL-S---SDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQ 396 (553)
Q Consensus 326 ~l-~---~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~---~~~~~~ 396 (553)
.. . .......|.-+.+++..++...|+-.+ ...+...+....+|++..-|..++.++|.++.... .+++ .
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ 887 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-H 887 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-H
Confidence 42 2 112133444455777777777776443 45677788888899988899999999999988653 4555 3
Q ss_pred hHHHHHHHh-hcCCCcHHHHHHHHHHHHHHhhhChhhhH---H---HHHHHHHHHc-cCCchHHHHHHHHHHHHHHHHh
Q 008806 397 SLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFD---D---KLGALCMQWL-QDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 397 ~ll~~l~~~-~~d~~~~vR~~~~~~l~~i~~~~~~~~~~---~---~l~~~l~~~l-~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
++...+..+ ..|.+..+|++|+..+..+..+.|.+... . .....+.... .+++..+|..+..++..+-...
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 444444433 45788999999999999998888754211 0 1112222222 3455567777777776665544
No 118
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.12 E-value=2.4e-05 Score=63.12 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=64.1
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhhhhhC---HHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh---h
Q 008806 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---L 393 (553)
Q Consensus 320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---~ 393 (553)
+++.+.+++.+.++.+|..++.++..++.... .......++|.+.+++.|+++.++..++.+++.++...+.. .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 55555666666666677777766666664321 11122356666777777777777777777777776543211 1
Q ss_pred HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 008806 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 394 ~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~ 425 (553)
....+++.+.+.+.+.+..+|..++.++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22346667777777777777777777776654
No 119
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.11 E-value=0.018 Score=59.74 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=70.8
Q ss_pred ChHHHHHHHHHHHHhhhh--hchhhHHhhHHHH-HHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccC
Q 008806 371 FPDVRLNIISKLDQVNQV--IGIDLLSQSLLPA-IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 447 (553)
Q Consensus 371 ~~~VR~~a~~~l~~~~~~--~~~~~~~~~ll~~-l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D 447 (553)
.+..-..++.+++.+... ..+... ..++.. +..+..|....+|..++.++....+.---..+.+.++..+.++..+
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~ 541 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASK 541 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHccc
Confidence 444444677777766665 222222 333333 3334456677788888877765542111123456778888889999
Q ss_pred CchHHHHHHHHHHHHHHHHhChhHH---hhhhhhhhhhhhh
Q 008806 448 KVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQKSHVLD 485 (553)
Q Consensus 448 ~~~~VR~~a~~~l~~l~~~~~~~~~---~~~i~p~l~~~l~ 485 (553)
.+.+|-....++|..+++. ++++. ...|.|....++.
T Consensus 542 ~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 542 SSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred ccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHH
Confidence 9999999999999988863 44433 2567777776654
No 120
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.00058 Score=69.82 Aligned_cols=185 Identities=18% Similarity=0.264 Sum_probs=136.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc--hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhh
Q 008806 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (553)
Q Consensus 163 ~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (553)
+-+......+.|+.+.+|.++...+..+++.-.. -...+.++......++|++..|=..|+..+..+++..+.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----- 801 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----- 801 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence 3456666678899999999999999999985432 223456888888899999999999999999999877443
Q ss_pred chHHHHHHhcC---C-CCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--
Q 008806 241 HILPVIVNFSQ---D-KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-- 312 (553)
Q Consensus 241 ~ll~~l~~l~~---d-~~~~vR~~~~~~l~~l~~~~~~~~--~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~-- 312 (553)
.++|.+.+... + .....|.-+.+++.+++...|+-. +...++..++...+|++..-|..++.+++.++....
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 46666655221 1 113556667788999988888643 234688899999999988889999999999887653
Q ss_pred -HHHHHHhHHHHHHHh-ccCCcHHHHHHHHHHHHhhhhhhCHH
Q 008806 313 -PELAIQHILPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKD 353 (553)
Q Consensus 313 -~~~~~~~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (553)
.+++ ..+...+..+ ..|.+..+|++|+..+..+-...|.+
T Consensus 882 vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d 923 (982)
T KOG4653|consen 882 VSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED 923 (982)
T ss_pred hhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh
Confidence 4443 3444444443 35888999999999999988777744
No 121
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.09 E-value=0.0019 Score=64.71 Aligned_cols=264 Identities=14% Similarity=0.122 Sum_probs=141.3
Q ss_pred CChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCc
Q 008806 214 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE 293 (553)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~ 293 (553)
.+..++..|.+.++.+.+.++. ..+..+..+..+++|.+..||..+++.|..+|..-+ .....+..+|.++|..++
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL~QlL~tdd 109 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVLVQLLQTDD 109 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHHHHHHhccc
Confidence 5688899999999998887765 345678888899999999999999999999987522 123578899999999888
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH------HhHHHhHHHHHHHhh
Q 008806 294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------DATIEQLLPIFLSLL 367 (553)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~p~l~~~l 367 (553)
+....++-.+|..+...- +...+..+...+..- ...+..+|+-++..+..-...++. +.....+...+.+.|
T Consensus 110 ~~E~~~v~~sL~~ll~~d-~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL 187 (556)
T PF05918_consen 110 PVELDAVKNSLMSLLKQD-PKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL 187 (556)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence 777777777777766643 332233343333321 234677898888777432222221 334567777788888
Q ss_pred CCCChHHHHHHHHHHHHhhhhhc---hhhHHhhHHHHHHHhhc-C----C-CcHHHHHHHHHHHH----HHhhhChhhhH
Q 008806 368 KDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAE-D----R-HWRVRLAIIEYIPL----LASQLGVGFFD 434 (553)
Q Consensus 368 ~d~~~~VR~~a~~~l~~~~~~~~---~~~~~~~ll~~l~~~~~-d----~-~~~vR~~~~~~l~~----i~~~~~~~~~~ 434 (553)
+|-..+-=...+..|..+ ..++ ...-.+.+++.+.+.+. | . +...-...+.|+.. +........|.
T Consensus 188 ~DVTaeEF~l~m~lL~~l-k~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv 266 (556)
T PF05918_consen 188 QDVTAEEFELFMSLLKSL-KIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFV 266 (556)
T ss_dssp TT--HHHHHHHHHHHHTS-GG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHH
T ss_pred HhccHHHHHHHHHHHHhC-ccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHH
Confidence 873322111122222222 2211 11223566777665542 1 1 12222223333333 22223333344
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhh
Q 008806 435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLD 485 (553)
Q Consensus 435 ~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~ 485 (553)
.++...++.-+.+-....|...++++..++...|... ...++|.+.+.+.
T Consensus 267 ~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~ 316 (556)
T PF05918_consen 267 NYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLK 316 (556)
T ss_dssp HHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHH
Confidence 4444444444555556788889999999998888655 3455566665553
No 122
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0039 Score=63.90 Aligned_cols=206 Identities=17% Similarity=0.159 Sum_probs=131.8
Q ss_pred cchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhh----hhhHHHHHHHHhcCC-CcchhhhHhhhhHhhcCCCChH-
Q 008806 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL----VDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI- 159 (553)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~- 159 (553)
.+-.+|+.+....|+...-.++.-+.++...-.++.. .+.+.|.+..+++++ ++.+...||+++..+.+.++..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 4556677776665665554444444443333222222 234788888888765 5789999999999998887665
Q ss_pred ---HHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc
Q 008806 160 ---LKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (553)
Q Consensus 160 ---~~~~l~~~l~~-ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (553)
.....+|.|.+ |+.=.--.|.++++.+|..+...-+.......-+-..+..+.--.-.++..|+.+..+.++.+..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22335666665 44456678999999999988877665333221111111122212234566777777888888777
Q ss_pred ch--hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc------cccchHHHHHHhcCC
Q 008806 236 QD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------TRMDLVPAYVRLLRD 291 (553)
Q Consensus 236 ~~--~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~------~~~~llp~l~~ll~d 291 (553)
+. +.-..+|.+..+++..+.+.-..++-++..++..+.... ....++.-..+++.-
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 54 445689999999998888888899999999988775432 123466666666543
No 123
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00054 Score=65.39 Aligned_cols=302 Identities=15% Similarity=0.094 Sum_probs=167.5
Q ss_pred ccHHHHHHHhhhHHHHHHhhChHH-Hhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCC---cc----------hhh
Q 008806 21 DDIQLRLNSIRRLSTIARALGEER-TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG---VE----------HAH 85 (553)
Q Consensus 21 ~d~~~R~~a~~~l~~i~~~~~~~~-~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~---~~----------~~~ 85 (553)
+...+|..+...|..++.+++-.+ ...++...+.. ..+..+.++..++.++.++....+. ++ +|.
T Consensus 267 ~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 267 EPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 455789999999999988887533 22355555555 7788999999999999877654331 11 111
Q ss_pred cch--hHHHhhhccchhHHHHHHHHHHHHHHh----hcChhhhhhhHHHHHHHHhcC-CCcchhhhHhhhhHhhcCCCCh
Q 008806 86 VLL--PPLETLCTVEETCVRDKAVESLCRIGS----QMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPD 158 (553)
Q Consensus 86 ~l~--~~l~~l~~~~~~~vR~~a~~~l~~l~~----~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~ 158 (553)
... |.-........+......+..+..+.. .++. + .....+.++.-++| ++.-+|.+|.+.++..+-+.+.
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn-~-~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l 424 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPN-D-RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL 424 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCC-c-chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch
Confidence 111 111111122234445556666655543 1222 1 12234445444443 4455677777777665544333
Q ss_pred H----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC
Q 008806 159 I----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (553)
Q Consensus 159 ~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 234 (553)
. ........+..-+.|+.-.+|..++.++|.+...+ -+.-+++|..+..+.+.+...
T Consensus 425 r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL-----------------~~~~Ps~~s~~eR~sg~ll~~-- 485 (728)
T KOG4535|consen 425 RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDAL-----------------IVNMPTPDSFQERFSGLLLLK-- 485 (728)
T ss_pred hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHH-----------------HcCCCCchHHHHHHHHHHHHH--
Confidence 2 55666777777788888888888888888776532 234444444444444332211
Q ss_pred cchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcC-----CCcHHHHHHHHHHHHHH
Q 008806 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR-----DNEAEVRIAAAGKVTKF 307 (553)
Q Consensus 235 ~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~llp~l~~ll~-----d~~~~vr~~a~~~l~~~ 307 (553)
.+..-.+... ...+||..+.++|+++...+.. +.....++..-..-+- .....||-+++.+++.+
T Consensus 486 -------~~~~A~~~~A-d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 486 -------MLRSAIEASA-DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNL 557 (728)
T ss_pred -------HHHHHHHhhh-hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence 1111111112 2235777777777776655431 0011111111111111 12356888999999988
Q ss_pred HHhh----CHHHHHHhHHHHHHHhccC-CcHHHHHHHHHHHHhhhhhhC
Q 008806 308 CRIL----NPELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG 351 (553)
Q Consensus 308 ~~~~----~~~~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~ 351 (553)
.+.- ....+...+.+.+..++.+ .|.+||..++.++..-..-.|
T Consensus 558 fkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 558 FKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred hcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 7641 2223346677777777654 678899888888877665444
No 124
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.05 E-value=0.00044 Score=65.92 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=17.5
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 008806 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (553)
Q Consensus 280 ~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~ 312 (553)
.+.|.+++........||+.|+.+|-.+...+|
T Consensus 448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 345555555555555555555555555555555
No 125
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.01 E-value=0.018 Score=59.96 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhcc-CCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChH
Q 008806 295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD 373 (553)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~ 373 (553)
-+|..+.-+++.++-.. +......+|.+.+-++ ...-.+|..++-+++.+|..+.-. .+.-+|.+...|.|+++-
T Consensus 946 ~vra~~vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam--~d~YiP~I~~~L~Dp~~i 1021 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAM--TDRYIPMIAASLCDPSVI 1021 (1529)
T ss_pred HHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHH--HHHhhHHHHHHhcCchHH
Confidence 45666666677666543 2334557788766554 345678888888888887654322 345689999999999999
Q ss_pred HHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHH
Q 008806 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444 (553)
Q Consensus 374 VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~ 444 (553)
||+.++..|..+.+.--.. ....++-.+...+-|.+..+|.-+=.+++.+...-.+-.|..+++.+++.+
T Consensus 1022 VRrqt~ilL~rLLq~~~vK-w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1022 VRRQTIILLARLLQFGIVK-WNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred HHHHHHHHHHHHHhhhhhh-cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHH
Confidence 9999999999887632112 234455555566678999999999999999998877777878888877754
No 126
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.00 E-value=0.021 Score=56.41 Aligned_cols=166 Identities=14% Similarity=0.054 Sum_probs=107.1
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhCh--HHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcc
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~--~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 87 (553)
+.+++-++.+.|..+|..++..|+.+....++ +...+.|+..+.. +-|..+.||+.|..+|..+-+.-+.+. ..+
T Consensus 93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~ 170 (885)
T COG5218 93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRI 170 (885)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHH
Confidence 77889999999999999999999999887776 5555666666666 889999999999999998776544433 223
Q ss_pred hhHHH-hhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcch-hhhHhhhhHhhcCCCChHHHHHHH
Q 008806 88 LPPLE-TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTA-RVSACGLFHIAYPSAPDILKTELR 165 (553)
Q Consensus 88 ~~~l~-~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~-r~~~~~~l~~l~~~~~~~~~~~l~ 165 (553)
..++. .+.+|++.+||+.|+-.+.. + +--.|.+..-..|-+-.. |..-..++..+.........+.++
T Consensus 171 ~n~l~~~vqnDPS~EVRr~allni~v-----d-----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~ 240 (885)
T COG5218 171 VNLLKDIVQNDPSDEVRRLALLNISV-----D-----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL 240 (885)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHeee-----C-----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh
Confidence 33433 34569999999988743311 1 112344444444433222 222233444443222222222333
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHH
Q 008806 166 SIYTQLCQDDMPMVRRSAASNLGK 189 (553)
Q Consensus 166 ~~l~~ll~d~~~~Vr~~a~~~l~~ 189 (553)
.+..-+.|.+..||.+++.++..
T Consensus 241 -l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 241 -LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred -hhhhcchhhhhhHHHHHHHHHHH
Confidence 45556788999999998887764
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.95 E-value=1.3e-05 Score=54.21 Aligned_cols=53 Identities=32% Similarity=0.137 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHHhhhCh--hhhHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 008806 411 WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (553)
Q Consensus 411 ~~vR~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l 463 (553)
|.+|..++.+++.++...+. ..+.+.++|.+..+++|++..||.+|+.+||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 67888888888876654433 235677888998999998889999999998865
No 128
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.049 Score=58.41 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=96.4
Q ss_pred hCHHhHHHhHHHHHHHhhCC----CChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhc-CCCcHHHHHHHHHHHHH
Q 008806 350 LGKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLL 424 (553)
Q Consensus 350 ~~~~~~~~~l~p~l~~~l~d----~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~~~~~l~~i 424 (553)
.|++.....+.|++....+. .+++++.+|.-+|++++- +..+.. +.-+|.|...++ ++++.+|.+++-++|.+
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~fc-es~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAEFC-ESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHHHH-HHHHHHHHHHHhcCCCceeeecchheccch
Confidence 45555667888999888854 458899999999999875 333333 555777777665 88999999999999999
Q ss_pred HhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHH-hhhhhhhhhhhhhhhccccc
Q 008806 425 ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA-MQHITPQKSHVLDCCQWSLM 492 (553)
Q Consensus 425 ~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~-~~~i~p~l~~~l~~~~~~~~ 492 (553)
+-.++. +.+..-+.+..-+.|+++.||..|+-++..++-+- .. ..-.++.+...+.|++-++.
T Consensus 989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd---miKVKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen 989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND---MIKVKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh---hhHhcccHHHHHHHhcCCcHHHH
Confidence 865543 23456677888999999999999999999887531 11 12334444444555554443
No 129
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.89 E-value=0.0045 Score=63.06 Aligned_cols=370 Identities=15% Similarity=0.081 Sum_probs=197.5
Q ss_pred cchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh-hhhhhhHHHHHHHHhcCC-CcchhhhHhhhhHhhcCCCChHHHHH
Q 008806 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTE 163 (553)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~ 163 (553)
.+.|++.++. .++..||...++.+..+.+.+.. ..++=-+-.++.++-+.+ +.-+|..+.-.+..-.++++.+.+.+
T Consensus 24 ~L~plLlkl~-S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~ 102 (501)
T PF13001_consen 24 YLPPLLLKLA-SPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERRE 102 (501)
T ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 4555666554 45668898888888888877654 233222344444544444 56778877777777778888888888
Q ss_pred HHHHHHHhcCCCC---HHHHHHHHHHHHHHHhhhCchhh-----hhhHHHHHHHhhhCCChhHHHHHHHHHHHhhc----
Q 008806 164 LRSIYTQLCQDDM---PMVRRSAASNLGKFAATVEPAHL-----KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK---- 231 (553)
Q Consensus 164 l~~~l~~ll~d~~---~~Vr~~a~~~l~~l~~~~~~~~~-----~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~---- 231 (553)
++|.+.+.+.... .......+..+..+++....... ....-+.-...+.|... ..........+..
T Consensus 103 llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~l~~~~~~~~~l~~~ 180 (501)
T PF13001_consen 103 LLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCD--DVFLAPWFSKFLLLQPN 180 (501)
T ss_pred HHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHH--HHHcchhhccccccccc
Confidence 8888888776322 12222233333333333321000 00000000001111000 0000000000000
Q ss_pred c-CCcchhhhchHHHHH-----HhcCCC-C-------HHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCCcHHH
Q 008806 232 L-LEPQDCVAHILPVIV-----NFSQDK-S-------WRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEV 296 (553)
Q Consensus 232 ~-~~~~~~~~~ll~~l~-----~l~~d~-~-------~~vR~~~~~~l~~l~~~~~~~~~-~~~llp~l~~ll~d~~~~v 296 (553)
. .........-.|.+. ...... . .+++.++++.+.. ..+ ....++.++-.-.|++.+|
T Consensus 181 ~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~s-------g~f~d~~~~~~~liAsad~~~~V 253 (501)
T PF13001_consen 181 RAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLAS-------GFFPDEERFPPLLIASADSNSSV 253 (501)
T ss_pred cccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh-------cCCCcHhHHhheeeEEeCCcchH
Confidence 0 000000000011111 111111 1 1233333333322 222 2245555555557788889
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhHHHHHH--Hhcc-----CCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCC
Q 008806 297 RIAAAGKVTKFCRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 369 (553)
Q Consensus 297 r~~a~~~l~~~~~~~~~~~~~~~l~~~l~--~l~~-----d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d 369 (553)
...|-..|.++...+....+.+.++.... ..-. --++.+|..++..+..=. ......+.++.++...+..
T Consensus 254 ~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~---~Aa~~~~~~~~i~~~~l~~ 330 (501)
T PF13001_consen 254 SDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSV---IAATSFPNILQIVFDGLYS 330 (501)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhH---HHHhCCccHHHHHhccccC
Confidence 88888888887776665555555555444 1111 124667766665554421 1111234556677777766
Q ss_pred C--ChHHHHHHHHHH---HHhhhhhchhhHHhhHHHHHH----Hhhc--------CCCcHHHHHHHHHHHHHHhhhChhh
Q 008806 370 E--FPDVRLNIISKL---DQVNQVIGIDLLSQSLLPAIV----ELAE--------DRHWRVRLAIIEYIPLLASQLGVGF 432 (553)
Q Consensus 370 ~--~~~VR~~a~~~l---~~~~~~~~~~~~~~~ll~~l~----~~~~--------d~~~~vR~~~~~~l~~i~~~~~~~~ 432 (553)
+ +..+|..++..+ .......+...+ +.+-|.+. .... ..+...|..+.+++|.+++....-.
T Consensus 331 ~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~ 409 (501)
T PF13001_consen 331 DNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF 409 (501)
T ss_pred CccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc
Confidence 6 677888888888 777776665543 23333332 2231 2356799999999999998765432
Q ss_pred -hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh
Q 008806 433 -FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 433 -~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
-.-.++.-++..+.++..+||-+.-++|+.+...+..
T Consensus 410 ~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 410 SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 1134667777777999999999999999999998864
No 130
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.86 E-value=5.4e-05 Score=51.07 Aligned_cols=53 Identities=26% Similarity=0.278 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhhhhhCHH--hHHHhHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008806 333 QHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (553)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~ 385 (553)
|.||.+++.+++.++...+.. ...+.++|.+..+++|+++.||.+|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 678888888888877554432 23567888888888888888888888888754
No 131
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.85 E-value=0.028 Score=64.77 Aligned_cols=293 Identities=11% Similarity=0.127 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhhhCc------hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc-ch-----hhhchHHHHH
Q 008806 180 RRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD-----CVAHILPVIV 247 (553)
Q Consensus 180 r~~a~~~l~~l~~~~~~------~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~-----~~~~ll~~l~ 247 (553)
|.-....|..++.+--. ..++..+-+.+.+...+++..++..|+..|..++..+-. +. +.+.++..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 44445555555543221 223344556666665666788999999998888765332 22 2233333333
Q ss_pred H-hcCCCCHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh-hC---H--HHHHH
Q 008806 248 N-FSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-LN---P--ELAIQ 318 (553)
Q Consensus 248 ~-l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~-~~---~--~~~~~ 318 (553)
. +.+..+..+|..+.+++.++....+..... +.++.++.....++++.+-..|.+.+..+... ++ . .....
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence 3 445567789999999999998876643311 24566666666777777777888888776553 22 1 12335
Q ss_pred hHHHHHHHhccCC-cHHHHHHHHHHHHhhhhhh-----------------------------------CHHhHHHhHHHH
Q 008806 319 HILPCVKELSSDS-SQHVRSALASVIMGMAPLL-----------------------------------GKDATIEQLLPI 362 (553)
Q Consensus 319 ~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~-----------------------------------~~~~~~~~l~p~ 362 (553)
.++..+..+.... +..+--.++..+..++..+ +.+......+|+
T Consensus 1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076 1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 5666666666433 2333333333333321111 011112345566
Q ss_pred HHHh---hCCCChHHHHHHHHHHHHhhhhhchhh--------HHhhHHHHHHHhhcC------------------C----
Q 008806 363 FLSL---LKDEFPDVRLNIISKLDQVNQVIGIDL--------LSQSLLPAIVELAED------------------R---- 409 (553)
Q Consensus 363 l~~~---l~d~~~~VR~~a~~~l~~~~~~~~~~~--------~~~~ll~~l~~~~~d------------------~---- 409 (553)
+..+ ..|+..+||..|+.+|-.+....|... +...+.|.+..+-.+ +
T Consensus 1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 5544 578899999999999999888877542 234566665443210 0
Q ss_pred CcHHHHHHHHHHHHHHhhhChh-----hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHH
Q 008806 410 HWRVRLAIIEYIPLLASQLGVG-----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 472 (553)
Q Consensus 410 ~~~vR~~~~~~l~~i~~~~~~~-----~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~ 472 (553)
+.....++..++..+...+..- ...+.++..+..+...++..+-..+..|+.+++...|..+.
T Consensus 1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~ 1496 (1780)
T PLN03076 1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFS 1496 (1780)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCC
Confidence 1113555566666555443321 13344555555666777788888899999999988876543
No 132
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.85 E-value=0.0073 Score=61.57 Aligned_cols=220 Identities=16% Similarity=0.134 Sum_probs=132.0
Q ss_pred hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHH--HhcC-----CCCHHHHHHHHHHHHHHHHHhCC
Q 008806 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV--NFSQ-----DKSWRVRYMVANQLYELCEAVGP 274 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~--~l~~-----d~~~~vR~~~~~~l~~l~~~~~~ 274 (553)
..++.+.-...|.+.+|...|-..+..+...+....+.+.++.... .... -.++.+|..+ |+.+++....
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kI---L~~L~kS~~A 313 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKI---LSLLSKSVIA 313 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHH---HHHHHHhHHH
Confidence 3444444456788889988888888888776666665555555554 2111 1345566544 4444443322
Q ss_pred CccccchHHHHHHhcCCC--cHHHHHHHHHHH---HHHHHhhCHHHHHHhHHHHH----HHhcc--------CCcHHHHH
Q 008806 275 EPTRMDLVPAYVRLLRDN--EAEVRIAAAGKV---TKFCRILNPELAIQHILPCV----KELSS--------DSSQHVRS 337 (553)
Q Consensus 275 ~~~~~~llp~l~~ll~d~--~~~vr~~a~~~l---~~~~~~~~~~~~~~~l~~~l----~~l~~--------d~~~~vr~ 337 (553)
-...+..+.++...+... +..+|..+++.+ ......+++... ..+-|.+ -+..+ ..+...|.
T Consensus 314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~ 392 (501)
T PF13001_consen 314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRS 392 (501)
T ss_pred HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHH
Confidence 222356677777777666 567888888888 666666665432 2333332 22332 23578999
Q ss_pred HHHHHHHhhhhhhCHHhH-HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH------HhhHHHHHHHhhcCCC
Q 008806 338 ALASVIMGMAPLLGKDAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRH 410 (553)
Q Consensus 338 ~~~~~l~~l~~~~~~~~~-~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~------~~~ll~~l~~~~~d~~ 410 (553)
.+..++|.+++....-+. .-.++..++..|.++.+++|.+.-.+|..+...+....- ...+.-.+.....+..
T Consensus 393 ~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~ 472 (501)
T PF13001_consen 393 LAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEV 472 (501)
T ss_pred HHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchh
Confidence 999999999987665432 224566666777888899999999898888776643111 1111111222233445
Q ss_pred cHHHHHHHHHHHHHH
Q 008806 411 WRVRLAIIEYIPLLA 425 (553)
Q Consensus 411 ~~vR~~~~~~l~~i~ 425 (553)
..+|..++.....+.
T Consensus 473 ~~~R~~avk~an~~f 487 (501)
T PF13001_consen 473 RSCRYAAVKYANACF 487 (501)
T ss_pred HHHHHHHHHHHHHhC
Confidence 567777776665443
No 133
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0012 Score=64.37 Aligned_cols=137 Identities=19% Similarity=0.134 Sum_probs=95.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHH
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 244 (553)
-..+.+++.|.++..|.+.+-+++.--..-++..+...++++ ..+|.++.||.+|+-+++-++-. . .+.+..
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~--D---~~~lv~ 589 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCD--D---RDLLVG 589 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeEec--C---cchhhH
Confidence 346667888999999988777766544444444455555554 36788999999998888776632 1 122344
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 008806 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (553)
Q Consensus 245 ~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (553)
.+.-+.++-++.||...+-+||-.|..-|. +..+.++..++.|.+.-||++|+-+++-+.....+
T Consensus 590 tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 590 TVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred HHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 444455566788999999999888876654 34567778888899889999998888877665443
No 134
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.027 Score=51.55 Aligned_cols=353 Identities=13% Similarity=0.089 Sum_probs=190.9
Q ss_pred HHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH--------HHHHHHHHHHHhcCCCCH
Q 008806 106 AVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--------LKTELRSIYTQLCQDDMP 177 (553)
Q Consensus 106 a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--------~~~~l~~~l~~ll~d~~~ 177 (553)
...+|..+.+........+.++|.++.-+..++..++..++..++.+.+.+... .-..+++.+..++...+.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 444555555544444445556777777777777778888888888877776533 125678888888899999
Q ss_pred HHHHHHHHHHHHHHhhhCchhhhhhHHHH-------HHHhhhCCChhHHHHHHHHHHHhhccCCc---chhhhchHHHHH
Q 008806 178 MVRRSAASNLGKFAATVEPAHLKTDIMSI-------FEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIV 247 (553)
Q Consensus 178 ~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~-------l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~ 247 (553)
+|.+++.+.+..++..-. -.+.++|. +..+...-++-+|....+.+..+....+. +...+.++..+.
T Consensus 143 eVAkAAiesikrialfpa---aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLe 219 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPA---ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLE 219 (524)
T ss_pred HHHHHHHHHHHHHHhcHH---HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHH
Confidence 999999999988875321 12222221 11112223344555555555554433222 122334555555
Q ss_pred HhcC-CCCHHHHHHHHHHHHHHHHHh-CCCccc-cchHHHHHHhcC--CCcHHHHHHHHHHHHHHHHhhCHHHHHH----
Q 008806 248 NFSQ-DKSWRVRYMVANQLYELCEAV-GPEPTR-MDLVPAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPELAIQ---- 318 (553)
Q Consensus 248 ~l~~-d~~~~vR~~~~~~l~~l~~~~-~~~~~~-~~llp~l~~ll~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~---- 318 (553)
.-++ .++.-|+..+.+....++..- |.++.. ..++..+.+.+. |++|--+- .++..+++++|.+.+.+
T Consensus 220 aElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekf---ralmgfgkffgkeaimdvsee 296 (524)
T KOG4413|consen 220 AELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKF---RALMGFGKFFGKEAIMDVSEE 296 (524)
T ss_pred HHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHH---HHHHHHHHHhcchHHhhcCHH
Confidence 4333 366678888888777777643 334432 346666666653 44444333 34444555555543221
Q ss_pred ----h---HHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHH-hHHHHHHHhh---CCCCh-HHHHHHHHHHHHhh
Q 008806 319 ----H---ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE-QLLPIFLSLL---KDEFP-DVRLNIISKLDQVN 386 (553)
Q Consensus 319 ----~---l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~-~l~p~l~~~l---~d~~~-~VR~~a~~~l~~~~ 386 (553)
. .+....+..+..++....+++.+++.++.......... .=-|.+..++ -|.+. .-.+.++.+|..+.
T Consensus 297 aicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 297 AICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred HHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 1 12222345566778888999999999886554332211 1112222222 23332 34456677777776
Q ss_pred hhhc--hhh---------HHhhH------------HHHHHHhhcCCCcHHHHHHHHHHHHHHhhh--ChhhhHHHHHHHH
Q 008806 387 QVIG--IDL---------LSQSL------------LPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALC 441 (553)
Q Consensus 387 ~~~~--~~~---------~~~~l------------l~~l~~~~~d~~~~vR~~~~~~l~~i~~~~--~~~~~~~~l~~~l 441 (553)
..+- ++. +...+ +..+...++.+.+.+|.++...+..++..- -.+.| --|-+
T Consensus 377 gelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeif---akeef 453 (524)
T KOG4413|consen 377 GELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIF---AKEEF 453 (524)
T ss_pred ccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHh---cCccc
Confidence 5431 110 11111 122344566778999999999999887431 11111 01233
Q ss_pred HHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 442 MQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 442 ~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
.....|...+--.++-++=-..++.+
T Consensus 454 ieiVtDastEhaKaakdAkYeccKAi 479 (524)
T KOG4413|consen 454 IEIVTDASTEHAKAAKDAKYECCKAI 479 (524)
T ss_pred eeeecccchhhHHHHHHHHHHHHHHH
Confidence 34455655555555544444444443
No 135
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.80 E-value=0.012 Score=55.72 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=106.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhh-Cchhh---hhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC----cchh
Q 008806 167 IYTQLCQDDMPMVRRSAASNLGKFAATV-EPAHL---KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE----PQDC 238 (553)
Q Consensus 167 ~l~~ll~d~~~~Vr~~a~~~l~~l~~~~-~~~~~---~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~ 238 (553)
-.+..+.++....|.+++..+..+...- -.+.+ ...+++.+.+.++-...+-+..|+.+++-++-.+| .+.+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 3334456667777887777766655332 22222 33566666666665554555666666666665544 2345
Q ss_pred hhchHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHH-----HhcC----------CCcHHHHHHH
Q 008806 239 VAHILPVIVNFSQDKS--WRVRYMVANQLYELCEAVGPEPT-RMDLVPAYV-----RLLR----------DNEAEVRIAA 300 (553)
Q Consensus 239 ~~~ll~~l~~l~~d~~--~~vR~~~~~~l~~l~~~~~~~~~-~~~llp~l~-----~ll~----------d~~~~vr~~a 300 (553)
...+.|.+.+.+.|.+ ..+|.+++.+|+-++-..+.+.. ....+..+- ...+ .+++.+..+|
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 5667788887777654 45677777777766554333221 111112211 1111 1235677888
Q ss_pred HHHHHHHHHhhCHH---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh
Q 008806 301 AGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 301 ~~~l~~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
+.+.+.+...++.. ...+..+|.+..++...+..||.++..++.-+.+.
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 88888777776653 23345667777777777788888887777766543
No 136
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.77 E-value=5e-05 Score=43.99 Aligned_cols=30 Identities=43% Similarity=0.514 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 008806 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (553)
Q Consensus 164 l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~ 193 (553)
++|.+.++++|++++||.+++.+|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 466777777777777777777777777654
No 137
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.74 E-value=0.019 Score=56.63 Aligned_cols=192 Identities=19% Similarity=0.131 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHhhcCh-h----hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCCh--H-HHHHHHHHHHHhc
Q 008806 101 CVRDKAVESLCRIGSQMRE-S----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--I-LKTELRSIYTQLC 172 (553)
Q Consensus 101 ~vR~~a~~~l~~l~~~~~~-~----~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~-~~~~l~~~l~~ll 172 (553)
.+-.-.+..+..+..+..+ + .+...++..+.+.+.+++-.+|.-+++++..+....++ + ..+.++..+.+-+
T Consensus 62 si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~ 141 (885)
T COG5218 62 SIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERL 141 (885)
T ss_pred CcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3334455556666663322 1 12223334444556778889999999999998888766 3 6677788888888
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHH-hhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcC
Q 008806 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ 251 (553)
Q Consensus 173 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~ 251 (553)
-|..+.||..|..+|..+-+.-+++. ..+...+.. +-+|++.+||..|+-.+.. .+.-.|++.+-+.
T Consensus 142 ~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERar 209 (885)
T COG5218 142 FDREKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERAR 209 (885)
T ss_pred hcchHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhh
Confidence 89999999999999988876554432 122223322 3479999999998865532 1335788899999
Q ss_pred CCCHHHHHHHH-HHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHH
Q 008806 252 DKSWRVRYMVA-NQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 306 (553)
Q Consensus 252 d~~~~vR~~~~-~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~ 306 (553)
|.+-..|+.+. ++|..++....... .+.+. .+...+.|.+..|+.++...+..
T Consensus 210 Dv~~anRr~vY~r~Lp~iGd~~~lsi-~kri~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 210 DVSGANRRMVYERCLPRIGDLKSLSI-DKRIL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred hhhHHHHHHHHHHHhhhhcchhhccc-cceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 98887777764 45666644322222 23333 55566789999999999887753
No 138
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.067 Score=57.43 Aligned_cols=150 Identities=16% Similarity=0.160 Sum_probs=111.7
Q ss_pred hCHHHHHHhHHHHHHHhccC----CcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC-CCChHHHHHHHHHHHHh
Q 008806 311 LNPELAIQHILPCVKELSSD----SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQV 385 (553)
Q Consensus 311 ~~~~~~~~~l~~~l~~l~~d----~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~ 385 (553)
.|++.....+.|.+.+.+.. .++..+.+|.-+++.++.. ..++ -+.-+|.+++.+. .+++.+|..+.-+++.+
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~f-ces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEF-CESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHH-HHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 46677788999999998854 4688999999999998743 3333 3344888888885 78899999999999998
Q ss_pred hhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 386 ~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
.-.+.. +.+...+.|...+.|++..+|.+++..++.+... .-.-...-++-+-.++.|++..+|..|=.-+..+..
T Consensus 989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 765542 2366677888889999999999999999888732 111112234455578999999999888766666554
Q ss_pred H
Q 008806 466 E 466 (553)
Q Consensus 466 ~ 466 (553)
.
T Consensus 1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred c
Confidence 4
No 139
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.029 Score=62.06 Aligned_cols=148 Identities=19% Similarity=0.173 Sum_probs=96.4
Q ss_pred HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH--HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH
Q 008806 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (553)
Q Consensus 317 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~ 394 (553)
+..++|.+..-+...+..+|..+...++.+....+.... .+.++..++.-+.|.+.+||-.+++....+...-..-.-
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 467888888878888899999999999988765544433 566777888888999999999999998887765221111
Q ss_pred HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 395 ~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
...++-.+.....|++.++|..++.....+... .-. +...++..+-..+.|+...||..|+..+.++.+.
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~-~l~-~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKF-KLV-YIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHh-hhh-hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 122333344444444444443322211111110 001 1111444555668899999999999999999985
No 140
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0012 Score=66.11 Aligned_cols=146 Identities=22% Similarity=0.234 Sum_probs=111.4
Q ss_pred hHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH--------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----Hh
Q 008806 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--------LKTELRSIYTQLCQDDMPMVRRSAASNLGKF----AA 192 (553)
Q Consensus 125 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--------~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l----~~ 192 (553)
..-|.+++.++-.+..+|..|+.++-.+++..+++ ..+.=+..+.++++|+-|.||..+...+..+ ..
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 35688888888899999999999999999887765 1233356777899999999999887765544 34
Q ss_pred hhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 008806 193 TVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (553)
Q Consensus 193 ~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~ 270 (553)
.+++..+.+-+--++-.+..|...+||.+..+.+..++..-......+.++|.+...+.|++.+||-++...|..+-.
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 455544433333444566778889999999999999886544445567789999999999999999999988776643
No 141
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.70 E-value=7.2e-05 Score=43.33 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=19.9
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 437 LGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 437 l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
++|.++++++|+++.||.+|+.+++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 356666777777777777777777776653
No 142
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.69 E-value=0.022 Score=52.38 Aligned_cols=222 Identities=18% Similarity=0.243 Sum_probs=137.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhh----hhHHHHHHHhhhCCChhHHHHHHHHHHHhhcc--CCcchhhhc
Q 008806 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK----TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL--LEPQDCVAH 241 (553)
Q Consensus 168 l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~ 241 (553)
+...+.++++.+|..+...|+.+...++++... +.++..+...+.| ...+. .++.++..+.+. ++.+. ...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~-~~l~gl~~L~~~~~~~~~~-~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQ-PALKGLLALVKMKNFSPES-AVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHH-HHHHHHHHHHhCcCCChhh-HHH
Confidence 344578899999999999999999998864433 3455555555533 23333 347777777643 22222 223
Q ss_pred hHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHH
Q 008806 242 ILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELA 316 (553)
Q Consensus 242 ll~~l~~l~~--d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~llp~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~~~~ 316 (553)
++..+.+... .-...+|..+.+.+..+........ ....++..+++.+. +.||.--..+.+-+..+...+....+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~ 160 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF 160 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence 3333333222 3345789999888888877643211 12346666666664 34576666677777777776655555
Q ss_pred HHhHHHHHHHhc--------cCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhh
Q 008806 317 IQHILPCVKELS--------SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (553)
Q Consensus 317 ~~~l~~~l~~l~--------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~ 388 (553)
.+.+...+.... +|+..-.|+.....+..... ....+.+..+|.+.+-|..+...++..+++++...+..
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 555555543322 34433344444333333221 22334677899999999998999999999999999998
Q ss_pred hchhhH
Q 008806 389 IGIDLL 394 (553)
Q Consensus 389 ~~~~~~ 394 (553)
+|.+.+
T Consensus 239 y~~~~~ 244 (262)
T PF14500_consen 239 YGADSL 244 (262)
T ss_pred CCHHHH
Confidence 887654
No 143
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0078 Score=60.47 Aligned_cols=145 Identities=24% Similarity=0.224 Sum_probs=108.3
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-------HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhh----h
Q 008806 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP----L 349 (553)
Q Consensus 281 llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~-------~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~----~ 349 (553)
.-|.+.+.++-.+.+||.+|+.-+-.+....+++ ...+.-...+.++++|+.+.||..+...+..+.. .
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4577778888999999999999887777666554 2334444567788999999999988776665543 2
Q ss_pred hCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 008806 350 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 350 ~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~ 425 (553)
.++....+-+-.++-.+-.|...+||.+..+.+..+...--...+.+.++|.+.-.+.|++.+||.++.+.+..+-
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 3444333333344455567888999999999999988765444556889999999999999999999999987664
No 144
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.12 Score=52.83 Aligned_cols=458 Identities=14% Similarity=0.140 Sum_probs=232.9
Q ss_pred cCcHHHHHHHhcC--ccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCc----
Q 008806 8 LYPIAVLIDELKN--DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV---- 81 (553)
Q Consensus 8 ~~~i~~ll~~L~~--~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~---- 81 (553)
++-+++.+.+... .|+..|+.|+.-+..+-. .+..|+-....+.+-. .++.+|--..+.|...++..-.+
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKs---Sp~aw~Icie~l~~~t-s~d~vkf~clqtL~e~vrekyne~nl~ 77 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKS---SPNAWEICIELLINET-SNDLVKFYCLQTLIELVREKYNEANLN 77 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcC---CccHHHHHHHHHHhhc-ccchhhhhhHHHHHHHHHHhhccCCHH
Confidence 4556777777774 488999999988887721 2233555555555522 45566766666666555422110
Q ss_pred ---chhhcchhHHHh-hhccc----hhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhH---
Q 008806 82 ---EHAHVLLPPLET-LCTVE----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH--- 150 (553)
Q Consensus 82 ---~~~~~l~~~l~~-l~~~~----~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~--- 150 (553)
-....+...+.. ...++ .+.++..+...+..+.-..-+..--..+..++.....++. ....+.+.
T Consensus 78 elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~----~~~~dfflkvl 153 (980)
T KOG2021|consen 78 ELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSA----ISGLDFFLKVL 153 (980)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccc----hhhHHHHHHHH
Confidence 011222222222 22333 4567777777776655433222211122222222222211 11111111
Q ss_pred ---------hhcCCCChH----------HH----HHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHhhhCchhh-hhh
Q 008806 151 ---------IAYPSAPDI----------LK----TELRSIYTQL----CQDDMPMVRRSAASNLGKFAATVEPAHL-KTD 202 (553)
Q Consensus 151 ---------~l~~~~~~~----------~~----~~l~~~l~~l----l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~ 202 (553)
.-+.+-+++ .+ .++....-++ -+..++.+-..+..++|.+...++-.-+ -+.
T Consensus 154 laIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~ 233 (980)
T KOG2021|consen 154 LAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDY 233 (980)
T ss_pred HHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchh
Confidence 111111111 11 1222222221 2233788888888999988887654322 235
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHhhcc-CCcchhhhchHHHHHHh-------cCC--CCHHHHHHHHHHHHHHHHHh
Q 008806 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LEPQDCVAHILPVIVNF-------SQD--KSWRVRYMVANQLYELCEAV 272 (553)
Q Consensus 203 l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~ll~~l~~l-------~~d--~~~~vR~~~~~~l~~l~~~~ 272 (553)
.++.+.+.++ -.++|.+|+.++-++... ..+.+. -.++..+... ..| .+...-. .+.++..++
T Consensus 234 f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dK-L~lln~L~q~l~lfg~~s~dq~~d~df~e----~vskLitg~ 306 (980)
T KOG2021|consen 234 FLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDK-LALLNMLNQTLELFGYHSADQMDDLDFWE----SVSKLITGF 306 (980)
T ss_pred HHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHH-HHHHHHHHHHHHHHhhhccccccCchHHH----HHHHHHhhc
Confidence 6676666666 568999999999776643 333221 1133333211 112 2333333 334444444
Q ss_pred CCCcc---------------------ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH------H---HHHHhHHH
Q 008806 273 GPEPT---------------------RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------E---LAIQHILP 322 (553)
Q Consensus 273 ~~~~~---------------------~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~------~---~~~~~l~~ 322 (553)
|.+.. .-.++|++++.+.++..++-.+...-+..+...+.. . .....+..
T Consensus 307 gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illa 386 (980)
T KOG2021|consen 307 GVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLA 386 (980)
T ss_pred ceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHH
Confidence 43221 013678888998888777766665555544443311 1 11122222
Q ss_pred HHHHhccCC------c----------HHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh---CCCChHHHHHHHHHHH
Q 008806 323 CVKELSSDS------S----------QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL---KDEFPDVRLNIISKLD 383 (553)
Q Consensus 323 ~l~~l~~d~------~----------~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l---~d~~~~VR~~a~~~l~ 383 (553)
.+.+++-|+ + ..+|...-.....++ ...++.+...+-..+...+ +..++..-+.|++.+-
T Consensus 387 i~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly 465 (980)
T KOG2021|consen 387 IFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLY 465 (980)
T ss_pred HHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 333333221 1 245655433333333 3444545544444444444 4556777788888877
Q ss_pred Hhhhhhchhh------------HHhhHHHHHH--HhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHH------
Q 008806 384 QVNQVIGIDL------------LSQSLLPAIV--ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ------ 443 (553)
Q Consensus 384 ~~~~~~~~~~------------~~~~ll~~l~--~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~------ 443 (553)
.+++.+..+. ....+++.+. ....+++..+..-.++.+.+-.+.+..+ +.-+|.++.
T Consensus 466 ~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ip~vL~aFld~r 542 (980)
T KOG2021|consen 466 NLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQKIPLVLNAFLDSR 542 (980)
T ss_pred HHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHccch
Confidence 7777653321 1123333333 2345677778777777777655554433 223444443
Q ss_pred HccCCchHHHHHHHHHHHHHHHHhChhHHh--hhhhhhhhhhh
Q 008806 444 WLQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQKSHVL 484 (553)
Q Consensus 444 ~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~--~~i~p~l~~~l 484 (553)
.+...+..||..|+..+.++++.+..+... +.++..+.+++
T Consensus 543 glhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 543 GLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred hccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678899999999999999887654321 44555555544
No 145
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.57 E-value=0.083 Score=61.12 Aligned_cols=269 Identities=12% Similarity=0.094 Sum_probs=156.6
Q ss_pred hhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-------HHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhhh
Q 008806 123 VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-------LKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATV 194 (553)
Q Consensus 123 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-------~~~~l~~~l~~-ll~d~~~~Vr~~a~~~l~~l~~~~ 194 (553)
+..+-+.+.+...+++..++..|++.+..++..+-+. ..++++..|.. +-+..+..||..+++++.++....
T Consensus 1135 W~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~ 1214 (1780)
T PLN03076 1135 WHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR 1214 (1780)
T ss_pred HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 3344444444444556778888888887776544322 34566666666 445677899999999999988766
Q ss_pred Cch--hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhcc-CC---c--chhhhchHHHHHHhcCCC-CHHHHHHHHHHH
Q 008806 195 EPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LE---P--QDCVAHILPVIVNFSQDK-SWRVRYMVANQL 265 (553)
Q Consensus 195 ~~~--~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~---~--~~~~~~ll~~l~~l~~d~-~~~vR~~~~~~l 265 (553)
+.. .-+..++.++.....++++.+-..|.+++..+... ++ . ......++..+.+..+.. +..+--.++..|
T Consensus 1215 ~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL 1294 (1780)
T PLN03076 1215 VNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFL 1294 (1780)
T ss_pred HhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHH
Confidence 532 12456777777777888888888888888766543 21 1 122234455555544322 233333333334
Q ss_pred HHHHHHhCC--------------------------Cc----c-----ccchHHHHHH---hcCCCcHHHHHHHHHHHHHH
Q 008806 266 YELCEAVGP--------------------------EP----T-----RMDLVPAYVR---LLRDNEAEVRIAAAGKVTKF 307 (553)
Q Consensus 266 ~~l~~~~~~--------------------------~~----~-----~~~llp~l~~---ll~d~~~~vr~~a~~~l~~~ 307 (553)
..++..+.. +. . ....+|.+.. ++.|+..+||..|+++|-.+
T Consensus 1295 ~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~i 1374 (1780)
T PLN03076 1295 RFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDT 1374 (1780)
T ss_pred HHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 333222200 00 0 0124455544 46799999999999998877
Q ss_pred HHhhCH----HH----HHHhHHHHHHHhcc----------------------CCcHHHHHHHHHHHHhhhhhhCHHhH--
Q 008806 308 CRILNP----EL----AIQHILPCVKELSS----------------------DSSQHVRSALASVIMGMAPLLGKDAT-- 355 (553)
Q Consensus 308 ~~~~~~----~~----~~~~l~~~l~~l~~----------------------d~~~~vr~~~~~~l~~l~~~~~~~~~-- 355 (553)
....|. +. +...+.|.+..+-. +.+.....+...++..++..+..-+.
T Consensus 1375 L~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L 1454 (1780)
T PLN03076 1375 LRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTV 1454 (1780)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765543 32 22234444432210 01112356666677776666554332
Q ss_pred ---HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch
Q 008806 356 ---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (553)
Q Consensus 356 ---~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~ 391 (553)
.+.++.++..+...++..+-.....+|..++...|.
T Consensus 1455 ~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1455 NPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 344555556666677777777788888888776654
No 146
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.14 Score=52.66 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=101.4
Q ss_pred HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCC-ChHHHHHHHHHHHHhhhhh--c
Q 008806 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI--G 390 (553)
Q Consensus 314 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~-~~~VR~~a~~~l~~~~~~~--~ 390 (553)
.++.+.++|.+. .-.+...-.|+-++..+++....--+......+-..+.++++|. +..||-+++.++..++.-. .
T Consensus 483 ~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~ 561 (978)
T KOG1993|consen 483 KWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFS 561 (978)
T ss_pred HHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCC
Confidence 356667777766 22334466899999999998875444444555666788889988 6779999999999888743 2
Q ss_pred hhhHH---hhHHHHHHHhhcC-CCcHHHHHHHHHHHHHHhhhChh--hhHHH---HHHHHHHHccCCchHHHHHHHHHHH
Q 008806 391 IDLLS---QSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG--FFDDK---LGALCMQWLQDKVYSIRDAAANNLK 461 (553)
Q Consensus 391 ~~~~~---~~ll~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~--~~~~~---l~~~l~~~l~D~~~~VR~~a~~~l~ 461 (553)
.+.+. +.+...+..++.. ...+.|...+..++.+....++. .+... ++|.++.-.. ..+-.|.+.+.++.
T Consensus 562 ~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~ 640 (978)
T KOG1993|consen 562 EDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLR 640 (978)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHH
Confidence 22221 1222222233322 35677888888888887766543 22223 3444444333 56779999999999
Q ss_pred HHHHHhChh
Q 008806 462 RLAEEFGPE 470 (553)
Q Consensus 462 ~l~~~~~~~ 470 (553)
+++..+|.+
T Consensus 641 ~lV~alg~q 649 (978)
T KOG1993|consen 641 NLVNALGAQ 649 (978)
T ss_pred HHHHHhccC
Confidence 999999865
No 147
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.54 E-value=0.0015 Score=67.40 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchh---hhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc-
Q 008806 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP- 235 (553)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 235 (553)
...+++|.+.+........+|..-..+|..+..+.+.+. ..+.++|.+.+.++=++..||..+..++..+....+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 455666666666665555666666667777766665432 3567777777777777777777777766655544332
Q ss_pred -chhhhchHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 008806 236 -QDCVAHILPVIVNFSQDKS---WRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307 (553)
Q Consensus 236 -~~~~~~ll~~l~~l~~d~~---~~vR~~~~~~l~~l~~~~~~~---~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~ 307 (553)
....+.++|.+..+..|.+ -.||..+.++++.+.+..+.. .+.+.++..+.+.+.|+.--||+.|..+=+.+
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 2345667777777666655 567777777777777655543 24566777777777777777777777665443
No 148
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0055 Score=55.62 Aligned_cols=176 Identities=15% Similarity=0.116 Sum_probs=126.3
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHH
Q 008806 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 357 (553)
Q Consensus 280 ~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 357 (553)
..+...+..+.+.+|+....++..+..+..+.... ..+..++..+.+-+.+....|-.+++.+++.+...++.....
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 35555667778888999999999888887764321 224556667777788888999999999999999888776432
Q ss_pred hHHHHHHHhh---CCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh---
Q 008806 358 QLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--- 431 (553)
Q Consensus 358 ~l~p~l~~~l---~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--- 431 (553)
.+-..+..++ .+++.-||+.|-++|-.++....+.. +++.|...+.+.+.++|..++.++......+|..
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~----~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~ 242 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK----LLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL 242 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH----HHHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence 3444444454 34567899999999999998776644 5666666678889999999988888877776633
Q ss_pred -hhHHHHHHHHHHHccCCchHHHHHHHHHH
Q 008806 432 -FFDDKLGALCMQWLQDKVYSIRDAAANNL 460 (553)
Q Consensus 432 -~~~~~l~~~l~~~l~D~~~~VR~~a~~~l 460 (553)
.+...+.+.+..-..|.-+.+|++|=-.+
T Consensus 243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~ 272 (334)
T KOG2933|consen 243 LQGSCDLSRAAQEQGSDKLPELREAARFVR 272 (334)
T ss_pred hHhHHHHHHHHHhhhcccccccccchhHHH
Confidence 23345556666667777777765554433
No 149
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.52 E-value=0.046 Score=51.84 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=101.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHH
Q 008806 166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245 (553)
Q Consensus 166 ~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 245 (553)
..+...++.+++.||+.+.++||-.+-. +. .....-++.+...++.++..+|..|++++..+....|.+.....
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~---- 103 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLL-DK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE---- 103 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHh-Ch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch----
Confidence 3344567788889999999999976643 22 33345566666666666888999999888887766554322110
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh--hCH-HHHHHhHHH
Q 008806 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI--LNP-ELAIQHILP 322 (553)
Q Consensus 246 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~--~~~-~~~~~~l~~ 322 (553)
.+.+ .......+...+.+.+.+.++++|..|++.+..+.-. +.. ..+...++-
T Consensus 104 -----~~~~-------------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll 159 (298)
T PF12719_consen 104 -----SDND-------------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLL 159 (298)
T ss_pred -----hccC-------------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 0000 1222345777777888777888888888888776542 222 222333322
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhhhhhhC--HHhHHHhHHHHHHHhhC
Q 008806 323 CVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLK 368 (553)
Q Consensus 323 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~p~l~~~l~ 368 (553)
....-....+.+.|+.....+..++..-. .....+.++|.+..+.+
T Consensus 160 ~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 160 LYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 22222233456777777777777664322 12234455566555553
No 150
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.019 Score=63.46 Aligned_cols=147 Identities=17% Similarity=0.143 Sum_probs=94.5
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI 317 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 317 (553)
..++|.+..-+...+..+|..+...+|.+...-+.... .+.+...+++.+.|...+||.++++....+.-.-+.-.-.
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 34677777656666778999999999988765333322 4567888888899999999999999888766542211111
Q ss_pred HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhh
Q 008806 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (553)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~ 388 (553)
..+.-.+.....|.+.++|..++.....+.. +.-..... ++..+.+.+.|..+.||..|+..|..+.+.
T Consensus 338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~-~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 338 STILLALRERDLDEDVRVRTQVVIVACDVMK-FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHhhcCChhhhheeeEEEEEeehhH-hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 2233334444445555555443322211211 11111223 677778888999999999999999999884
No 151
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.52 E-value=0.066 Score=49.26 Aligned_cols=139 Identities=11% Similarity=0.017 Sum_probs=70.3
Q ss_pred HhhhCCChhHHHHHHHHHHHhhccCCcchh----hhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 008806 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 284 (553)
Q Consensus 209 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~ 284 (553)
..+.++++.+|..|+..|+.+...++++.. ...+..+...-+.| +..-..++.++..+... .. .........
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~-~~-~~~~~~~~i 81 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKM-KN-FSPESAVKI 81 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhC-cC-CChhhHHHH
Confidence 346788899999999999888888776433 23355555555543 22333336666666632 11 111112222
Q ss_pred HHHhcCCC-----cHHHHHHHHHHHHHHHHhhCHH--HHHHhHHHHHHHhc-cCCcHHHHHHHHHHHHhhhhhhC
Q 008806 285 YVRLLRDN-----EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLG 351 (553)
Q Consensus 285 l~~ll~d~-----~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~ 351 (553)
+..+.++- -...|..+.+-+..+.+..... ...+.++..+.+.+ ..++++.-..+.+.+..+...+.
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 22222211 2456766666666665543211 11223333333333 34556655555555555554444
No 152
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.50 E-value=0.14 Score=51.83 Aligned_cols=276 Identities=10% Similarity=0.012 Sum_probs=145.2
Q ss_pred HHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cC-CCcHHHHHHHHHHhhccccccCC--cchhhcchhHHHhhhccc
Q 008806 23 IQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTVE 98 (553)
Q Consensus 23 ~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~-d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~ 98 (553)
-..|..|++.+......... ....++.-.... +. +...+.|+++.+.|..+++.... ......++..+..-..++
T Consensus 4 l~~R~~a~~~l~~~i~~~~~-~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~ 82 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL-SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD 82 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch
Confidence 45788888888877666544 223444444444 22 23568999999999988875433 111122333333333344
Q ss_pred hhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC---------------------------CcchhhhHhhhhHh
Q 008806 99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE---------------------------WFTARVSACGLFHI 151 (553)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~---------------------------~~~~r~~~~~~l~~ 151 (553)
+-..|-.|+.+|..=++.+. .+...+.|++.+.+..- +...-......+..
T Consensus 83 d~~~~l~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 83 DFDLRLEALIALTDNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hHHHHHHHHHHHHcCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 55567777777765555552 23333444443322110 00001111223333
Q ss_pred hcC----CCChHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhh--hCchhhhhhHHHHHHHhhhCCChhHHHHHHH
Q 008806 152 AYP----SAPDILKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAAT--VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE 224 (553)
Q Consensus 152 l~~----~~~~~~~~~l~~~l~~ll~d~~-~~Vr~~a~~~l~~l~~~--~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~ 224 (553)
+.+ .+.++....++..+..+|...+ ...=+.+...+..+..+ ++. .....++..+....+-. +....+-+
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~-~sl~~~i~vLCsi~~~~--~l~~~~w~ 237 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPS-ESLSPCIEVLCSIVNSV--SLCKPSWR 237 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCCh-HHHHHHHHHHhhHhccc--ccchhHHH
Confidence 332 3444566777777777765443 33336677777777663 332 23334444444332222 44555556
Q ss_pred HHHHhhccCCcchhhhchHHHHHHhc--C----CCCHHHHHHHHHHHHHHHHHhCCCccc----cc--hHHHHHHhcCCC
Q 008806 225 GCAALGKLLEPQDCVAHILPVIVNFS--Q----DKSWRVRYMVANQLYELCEAVGPEPTR----MD--LVPAYVRLLRDN 292 (553)
Q Consensus 225 ~l~~l~~~~~~~~~~~~ll~~l~~l~--~----d~~~~vR~~~~~~l~~l~~~~~~~~~~----~~--llp~l~~ll~d~ 292 (553)
++..+++. ......+..+...+ + ..+..+-+++...++.+....+.+... .. ++|.+...++..
T Consensus 238 ~m~nL~~S----~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~ 313 (464)
T PF11864_consen 238 TMRNLLKS----HLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN 313 (464)
T ss_pred HHHHHHcC----ccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC
Confidence 66666632 11122344444444 2 234566678888888888766444322 23 888888888866
Q ss_pred cHHHHHHHHHHHHHHH
Q 008806 293 EAEVRIAAAGKVTKFC 308 (553)
Q Consensus 293 ~~~vr~~a~~~l~~~~ 308 (553)
++.|-...+..+..+.
T Consensus 314 ~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 314 SPRVDYEILLLINRLL 329 (464)
T ss_pred CCeehHHHHHHHHHHH
Confidence 6555555555555544
No 153
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.49 E-value=0.14 Score=51.54 Aligned_cols=130 Identities=14% Similarity=0.097 Sum_probs=93.1
Q ss_pred CChHHHHHHHHHHHHhhhhh---chhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh---hhhHHHHHHHHHH
Q 008806 370 EFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQ 443 (553)
Q Consensus 370 ~~~~VR~~a~~~l~~~~~~~---~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~ 443 (553)
.+..++.+++.++..+...+ ....-...+...+.+++.|++..+..+++.++..++-.+++ .+.....+..+.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 45678888888777775543 22222245566677778999999999999999999877765 2444557888999
Q ss_pred HccCCchHHHHHHHHHHHHHHHHhChhHH----hhhhhhhhhhhhhhhcccccchhhhhh
Q 008806 444 WLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQKSHVLDCCQWSLMHQKTEYL 499 (553)
Q Consensus 444 ~l~D~~~~VR~~a~~~l~~l~~~~~~~~~----~~~i~p~l~~~l~~~~~~~~~~~~~~~ 499 (553)
++.|+..++|..+.++|..++=.....+. ...-...+....+|++|.++.|.+..+
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL 528 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999998855443322 122333455566788999888876543
No 154
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.22 Score=55.28 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=54.8
Q ss_pred HHhhHHHHHHHhh-cCCCcHHHHHHHHHHHHHHhh--hC-hhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 394 LSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQ--LG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 394 ~~~~ll~~l~~~~-~d~~~~vR~~~~~~l~~i~~~--~~-~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
..+.++..+..+. .+.+|++|.+++..+..+.-. ++ .+.-.+.+...+.+++.|...+||+.|+++|.-+...-
T Consensus 1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s 1600 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS 1600 (1710)
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc
Confidence 4466777776444 456899999999888766532 22 23334567778889999999999999999999888754
No 155
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.35 Score=53.84 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=98.2
Q ss_pred HHhHHHHHHHh-ccCCcHHHHHHHHHHHHhhh--hhhC-HHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh
Q 008806 317 IQHILPCVKEL-SSDSSQHVRSALASVIMGMA--PLLG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (553)
Q Consensus 317 ~~~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~--~~~~-~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 392 (553)
...++..+..+ ..+.+|++|.+++..+.... ..++ .+...+.+...+...+.|...+||+.|+.+|.-+.+.-...
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence 45555555543 34567999999888777653 2233 22235678889999999999999999999999887643222
Q ss_pred hHHhhHHHHHHHhh-cCCCcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh
Q 008806 393 LLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 393 ~~~~~ll~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
...+...+.-.... ...+...+-.++..+|.++-.++-. .+.++.+..+-...+|+ ..+++++-+++..+-+....
T Consensus 1604 ~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1604 FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhh
Confidence 22111122222222 2234445556778888888766533 23334444444445555 78999999999988887766
Q ss_pred hHH
Q 008806 470 EWA 472 (553)
Q Consensus 470 ~~~ 472 (553)
+|-
T Consensus 1683 ~W~ 1685 (1710)
T KOG1851|consen 1683 TWR 1685 (1710)
T ss_pred hhh
Confidence 664
No 156
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.33 E-value=0.052 Score=57.67 Aligned_cols=231 Identities=17% Similarity=0.155 Sum_probs=110.9
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccC--Ccchh
Q 008806 162 TELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL--EPQDC 238 (553)
Q Consensus 162 ~~l~~~l~~ll~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~~~~ 238 (553)
+++...+.++-.. .....|.....+++.. |.......+... +...+-.-. .+...+..+.... +....
T Consensus 362 ~~L~~l~~~~~~~~~~~~~r~~~lDal~~a----GT~~av~~i~~~----I~~~~~~~~-ea~~~l~~l~~~~~~Pt~e~ 432 (618)
T PF01347_consen 362 EDLEELYKQLKSKSKKEQARKIFLDALPQA----GTNPAVKFIKDL----IKSKKLTDD-EAAQLLASLPFHVRRPTEEL 432 (618)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHHHHHHH-----SHHHHHHHHHH----HHTT-S-HH-HHHHHHHHHHHT-----HHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHc----CCHHHHHHHHHH----HHcCCCCHH-HHHHHHHHHHhhcCCCCHHH
Confidence 3444444443332 3556677666666653 333333333333 333222111 1334444443332 22233
Q ss_pred hhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC------------ccccchHHHHHHhc----CCCcHHHHHHHHH
Q 008806 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE------------PTRMDLVPAYVRLL----RDNEAEVRIAAAG 302 (553)
Q Consensus 239 ~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~------------~~~~~llp~l~~ll----~d~~~~vr~~a~~ 302 (553)
.+.+.+++..-....++.++.++.-+++.++...... ...+.+++.+.+.+ ...+.+.+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 3333333332222356778999999999988754322 12234555555444 3455677788888
Q ss_pred HHHHHHHhhCHHHHHHhHHHHHHHhccCC---cHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHH
Q 008806 303 KVTKFCRILNPELAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII 379 (553)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~l~~l~~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~ 379 (553)
+|+.++. ...++.+..++.+. ...+|.+++.++..++...... ..+.++|++.+ ...+.+||.+|.
T Consensus 513 aLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-v~~~l~~I~~n--~~e~~EvRiaA~ 581 (618)
T PF01347_consen 513 ALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-VREILLPIFMN--TTEDPEVRIAAY 581 (618)
T ss_dssp HHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-HHHHHHHHHH---TTS-HHHHHHHH
T ss_pred HhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-HHHHHHHHhcC--CCCChhHHHHHH
Confidence 8887542 34455555555554 6789999999988886544322 33444444433 234578999887
Q ss_pred HHHHHhhhhhchhhHHhhHHHHHHH-hhcCCCcHHHHHHHH
Q 008806 380 SKLDQVNQVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIE 419 (553)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~ll~~l~~-~~~d~~~~vR~~~~~ 419 (553)
..|-..-- . ..++..+.. +..+++..|+.....
T Consensus 582 ~~lm~~~P---~----~~~l~~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 582 LILMRCNP---S----PSVLQRIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHHHHT----------HHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHhcCC---C----HHHHHHHHHHHhhCchHHHHHHHHH
Confidence 55443211 1 122333333 335566666655443
No 157
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.54 Score=53.51 Aligned_cols=231 Identities=13% Similarity=0.111 Sum_probs=148.7
Q ss_pred hhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcchhH-HHhhhccchhHHHHHHHHHHHHHHhh
Q 008806 39 ALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEETCVRDKAVESLCRIGSQ 116 (553)
Q Consensus 39 ~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~-l~~l~~~~~~~vR~~a~~~l~~l~~~ 116 (553)
.+|++..+.--+.++.+ +...+|..|..++..++.++...+...+...+.+. +.++.+-.|+..|..-.-+++.+-++
T Consensus 867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 34555555444444555 67789999999999999999988887776666654 56677667777787777788888776
Q ss_pred cCh---hhhhhhHHHHHHHHhcCCC-cchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHh-cCCC--CHHHHHHHHHH
Q 008806 117 MRE---SDLVDWYIPLVKRLAAGEW-FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQL-CQDD--MPMVRRSAASN 186 (553)
Q Consensus 117 ~~~---~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~l-l~d~--~~~Vr~~a~~~ 186 (553)
.+. .+....-+.++..+..|+. +.++..+...+..+....++- +....+..+..+ +.++ ..+|++.--+.
T Consensus 947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen 947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRC 1026 (2067)
T ss_pred ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccc
Confidence 654 3333333456666666654 589999999888888766654 444455555554 3433 45677766666
Q ss_pred HH------HHHhhhCchh-------hhhh----HHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHh
Q 008806 187 LG------KFAATVEPAH-------LKTD----IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 249 (553)
Q Consensus 187 l~------~l~~~~~~~~-------~~~~----l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l 249 (553)
+. .+...+|++. .... .+-...-++.+++..+..++++++..+.-..+.....+.+++.++.+
T Consensus 1027 ~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1027 FNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSL 1106 (2067)
T ss_pred cccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHH
Confidence 66 6776666521 1111 11111113456678888999999988877766665666788888877
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 008806 250 SQDKSWRVRYMVANQLYELC 269 (553)
Q Consensus 250 ~~d~~~~vR~~~~~~l~~l~ 269 (553)
+...---.|.+...++.+++
T Consensus 1107 l~s~~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQLV 1126 (2067)
T ss_pred hcchhhhhhhhHHhhhhHHh
Confidence 66555445555555544443
No 158
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.28 E-value=0.27 Score=49.99 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=106.7
Q ss_pred hCHHHHHHhHHHHHHHhccC----CcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC-CCChHHHHHHHHHHHHh
Q 008806 311 LNPELAIQHILPCVKELSSD----SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQV 385 (553)
Q Consensus 311 ~~~~~~~~~l~~~l~~l~~d----~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~ 385 (553)
+|...+...+.|.+.+.+.+ +++....++.-++..+. ++..++..++ +|.++..+. .++|.+|..|.-.++.+
T Consensus 884 yGeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klM-ClS~~fc~eh-lpllIt~mek~p~P~IR~NaVvglgD~ 961 (1128)
T COG5098 884 YGEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLM-CLSFEFCSEH-LPLLITSMEKHPIPRIRANAVVGLGDF 961 (1128)
T ss_pred hchhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHH-HHhHHHHHHH-HHHHHHHHhhCCCcceeccceeecccc
Confidence 35556677888888888876 56778888877777766 3444544443 788888774 78999999999999998
Q ss_pred hhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 386 ~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
.-.+.. ..+.....|.+-+.|.+..||.+++..+..+.-. |.-.+ ..-.+.+..++.|++..+...|-..+-.+++
T Consensus 962 ~vcfN~--~~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq~KV-KGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 962 LVCFNT--TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQLKV-KGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred ceehhh--hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cceee-ccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 765532 2356666777888999999999999988877632 11111 1234556677888888888877777776665
Q ss_pred H
Q 008806 466 E 466 (553)
Q Consensus 466 ~ 466 (553)
.
T Consensus 1038 K 1038 (1128)
T COG5098 1038 K 1038 (1128)
T ss_pred c
Confidence 3
No 159
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=97.28 E-value=0.15 Score=51.68 Aligned_cols=433 Identities=13% Similarity=0.096 Sum_probs=195.2
Q ss_pred HHhcCccHHHHHHHhhhHHHHHHhhChHH---Hhh--------hhhhhhhh---cCCCcHHHHHHHHHHhhccccccCCc
Q 008806 16 DELKNDDIQLRLNSIRRLSTIARALGEER---TRK--------ELIPFLSE---NNDDDDEVLLAMAEELGVFIPYVGGV 81 (553)
Q Consensus 16 ~~L~~~d~~~R~~a~~~l~~i~~~~~~~~---~~~--------~ll~~l~~---~~d~~~~vr~~~~~~l~~l~~~~~~~ 81 (553)
..+.+.+..+|+.++++++++++.++... ..+ ..+..+++ ..++++.+...+...++ ++.. +.-
T Consensus 253 ~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~-~~i 330 (993)
T COG5234 253 SSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGA-GLI 330 (993)
T ss_pred cCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhc-ccc
Confidence 34457889999999999999998887432 111 12233333 24567777776665555 4332 222
Q ss_pred chhh-cchhHHHhhhc--------cchhHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHH-HhcCCCcchhhhHhhh
Q 008806 82 EHAH-VLLPPLETLCT--------VEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKR-LAAGEWFTARVSACGL 148 (553)
Q Consensus 82 ~~~~-~l~~~l~~l~~--------~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~-~~~~~~~~~r~~~~~~ 148 (553)
++.+ .+.+++...++ -+...+|..++-.+..+....+. +..+..+...+.+ ..-|++-.+|.++..+
T Consensus 331 d~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aa 410 (993)
T COG5234 331 DYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAA 410 (993)
T ss_pred chhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHH
Confidence 2222 24444444332 23456788777666655543222 2234445555443 7778888999988776
Q ss_pred hHhhcCC-CChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhh---hhH-HHHHHHhhhCCChhHHHHHH
Q 008806 149 FHIAYPS-APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK---TDI-MSIFEDLTQDDQDSVRLLAV 223 (553)
Q Consensus 149 l~~l~~~-~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~---~~l-~p~l~~~~~d~~~~vr~~a~ 223 (553)
+-....+ .+...-..++..+ + -..|.+ ...+-|.++..+.+.... +++ -.++.+-+.+=+++++....
T Consensus 411 l~E~iGR~~s~a~g~~lIslI----N--~~sv~r-~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~~~ 483 (993)
T COG5234 411 LFEVIGRHASIADGLSLISLI----N--YVSVTR-ISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQLSA 483 (993)
T ss_pred HHHHhccCCCcccchhhhhhc----c--ceecch-hhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccchhhhhhcc
Confidence 6555444 3322112222211 1 011111 223333333333211100 111 12233334455667777777
Q ss_pred HHHHHhhccCCcchhhh-chHHHHHHhcCCC--CHHHHHHHHHHH---------HHHHHHhCCCccccchHHHHHHhcCC
Q 008806 224 EGCAALGKLLEPQDCVA-HILPVIVNFSQDK--SWRVRYMVANQL---------YELCEAVGPEPTRMDLVPAYVRLLRD 291 (553)
Q Consensus 224 ~~l~~l~~~~~~~~~~~-~ll~~l~~l~~d~--~~~vR~~~~~~l---------~~l~~~~~~~~~~~~llp~l~~ll~d 291 (553)
..+..+.+.- . ..+ .+-|.+.++-.|- ...+-...++.+ ++++...-....+-.+.+.+.+...|
T Consensus 484 y~l~~liK~~-~--~~p~yl~~Il~k~~sdfi~~~~il~~~~k~F~~~~~~~rihei~~~i~q~kIkl~i~~~~~r~f~d 560 (993)
T COG5234 484 YSLRQLIKYP-K--ELPIYLPPILDKLSSDFIFGYTILASIIKGFLFPFDINRIHEILSHIQQTKIKLGILKGIQRIFAD 560 (993)
T ss_pred ccHHHHhcCc-c--cCchhhhHHhhhCchhhhcchhhHHHHHHHhcCccCCccHHHHHHHHHHhheeecCChHHHHHhcc
Confidence 7777775431 1 112 1222333333221 111111111111 11211110111112356666666777
Q ss_pred CcHHHHHHHHHHHHHHHHhh--CHHHHHHhHHHHHHHhccC--------------------CcHHHHHHHHHHHHhhhhh
Q 008806 292 NEAEVRIAAAGKVTKFCRIL--NPELAIQHILPCVKELSSD--------------------SSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~--~~~~~~~~l~~~l~~l~~d--------------------~~~~vr~~~~~~l~~l~~~ 349 (553)
+.+--|.-+...++.+.... ..+.+.+.+.|...-++.. ...++-.+..+....+.-.
T Consensus 561 ~~~~f~~F~~~~~~vi~g~~D~~~e~~idiVs~~~~~ll~~~~~p~~~~~~~~~~v~~~~~~~ariv~si~~~t~sli~~ 640 (993)
T COG5234 561 DIRVFRAFFSEAFSVIIGAIDLQEETIIDIVSDAYSVLLKFDDMPETLEVLLDYIVKCSTSKEARIVYSILQNTPSLIIS 640 (993)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhHhhHHHHhcchHHhhhhccccHHHHHHHHHHHHhccchhHHHHHHHHhccCchhhhc
Confidence 66645555555555544322 1222222222222221111 1111111222211111111
Q ss_pred hCH-HhHHHhHHHHHHHhhC-CCChHHHHHHHHHHHHhhh-hhchhhHHhhHHHHHHHhhcCC----CcHHHHHHHHHHH
Q 008806 350 LGK-DATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQ-VIGIDLLSQSLLPAIVELAEDR----HWRVRLAIIEYIP 422 (553)
Q Consensus 350 ~~~-~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~-~~~~~~~~~~ll~~l~~~~~d~----~~~vR~~~~~~l~ 422 (553)
+.. +...+.+...+.++.. |-+..+-..+-.-+..-.. .-..+.+.+.++..+.+...|. ...+|..++..++
T Consensus 641 ~~~qek~c~l~~~~yp~L~~~~~s~~I~~~~h~~V~~t~~~S~sie~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~ 720 (993)
T COG5234 641 FRYQEKICKLLLDIYPQLHSIDYSAPIANALHNIVPFTYEKSESIEEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMS 720 (993)
T ss_pred CccHHHHHHHHHHhhhhhcccccccchhhhhhcchhhhccccccHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHH
Confidence 221 1112222333333332 2122221111110000000 0112345577777777776553 4668888888887
Q ss_pred HHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 423 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 423 ~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
.+... ... ..-+.+.+.+.|+.+.+|.-+-++..++.-
T Consensus 721 SfL~k--D~~---~~~~y~iR~~~dki~~lR~l~yqa~eqI~v 758 (993)
T COG5234 721 SFLVK--DSS---GKKLYIIRQTFDKIDSLRGLAYQALEQIRV 758 (993)
T ss_pred HHhhc--ccc---CCchhHHHHhhcccHHHHhhhhhhhhheee
Confidence 75422 111 122356688899999999888888776653
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.011 Score=62.24 Aligned_cols=186 Identities=15% Similarity=0.117 Sum_probs=123.5
Q ss_pred CCCcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChH----HHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccC
Q 008806 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE----RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG 79 (553)
Q Consensus 5 ~~~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~----~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~ 79 (553)
+.+=+++..+++-|-|+-- |..|+..|+... .+||= ...-.+.|++.. +++...|.|-..+-...++...-.
T Consensus 468 r~PPeQLPiVLQVLLSQvH--RlRAL~LL~RFL-DlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~ 544 (1387)
T KOG1517|consen 468 RTPPEQLPIVLQVLLSQVH--RLRALVLLARFL-DLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDP 544 (1387)
T ss_pred CCChHhcchHHHHHHHHHH--HHHHHHHHHHHh-ccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCc
Confidence 3355667777777777655 445777777653 34431 123467788877 788888888888777776654221
Q ss_pred C-------cchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHHHhcCC-CcchhhhHhhh
Q 008806 80 G-------VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGE-WFTARVSACGL 148 (553)
Q Consensus 80 ~-------~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~-~~~~r~~~~~~ 148 (553)
. +.-..+++..+.- ...-+++-|..+.-.|..++..+.. ......++.++....+|+ .+-.|.-++-+
T Consensus 545 SCQ~dLvKe~g~~YF~~vL~~-~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~ic 623 (1387)
T KOG1517|consen 545 SCQADLVKENGYKYFLQVLDP-SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCIC 623 (1387)
T ss_pred hhHHHHHhccCceeEEEEecC-cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHH
Confidence 1 0000111111111 0111356788888888888877643 233455777888888885 68889999999
Q ss_pred hHhhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh
Q 008806 149 FHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194 (553)
Q Consensus 149 l~~l~~~~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~ 194 (553)
+|.+.+..... ........+..++.|+.++||.++.-+||.+....
T Consensus 624 LG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 624 LGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 99998887765 44556788888899999999999999999988764
No 161
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.012 Score=61.98 Aligned_cols=222 Identities=18% Similarity=0.095 Sum_probs=143.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc----hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc---ch
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QD 237 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~----~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~ 237 (553)
+|++.+.+-+.-. |-.|+..|+.+.. +|+ -...-.|+|+.+++++..-.+.|-.-+..+..|...-+. +.
T Consensus 474 LPiVLQVLLSQvH--RlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dL 550 (1387)
T KOG1517|consen 474 LPIVLQVLLSQVH--RLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADL 550 (1387)
T ss_pred cchHHHHHHHHHH--HHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHH
Confidence 4444443332333 4445555665543 222 112236899999999999999998888888777654211 11
Q ss_pred hhhchHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHh
Q 008806 238 CVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRI 310 (553)
Q Consensus 238 ~~~~ll~~l~~l~~d---~~~~vR~~~~~~l~~l~~~~~~~---~~~~~llp~l~~ll~d~-~~~vr~~a~~~l~~~~~~ 310 (553)
+++..-.+..+.+.+ -+++-|.+++-.|..++..+... -....++.++++.++|. ++-.|+-++-+|+.+-+.
T Consensus 551 vKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d 630 (1387)
T KOG1517|consen 551 VKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED 630 (1387)
T ss_pred HhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence 111111111111222 24578999999999998876422 23457889999999995 799999999999999887
Q ss_pred hCHHHH---HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh------------------HHHhHHH----HHHH
Q 008806 311 LNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA------------------TIEQLLP----IFLS 365 (553)
Q Consensus 311 ~~~~~~---~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~------------------~~~~l~p----~l~~ 365 (553)
+....+ ....-..+..++.|+.+.||.++..+++.+......++ ..+...+ .+..
T Consensus 631 ~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~ 710 (1387)
T KOG1517|consen 631 YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLA 710 (1387)
T ss_pred cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHH
Confidence 655422 12334556677889999999999999999987531111 0122223 4556
Q ss_pred hhCCCChHHHHHHHHHHHHhhhhh
Q 008806 366 LLKDEFPDVRLNIISKLDQVNQVI 389 (553)
Q Consensus 366 ~l~d~~~~VR~~a~~~l~~~~~~~ 389 (553)
.++|.++-||...+-+|..++...
T Consensus 711 ~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 711 LVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHhccchHHHHHHHHHHHHHHHhh
Confidence 778999999999888888876543
No 162
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.11 Score=58.50 Aligned_cols=282 Identities=16% Similarity=0.162 Sum_probs=169.6
Q ss_pred hHhhhhHhhcCCCChHHHHHHHHHHHHhcCC----CCHHHHHHHHH--HHHHHHhhh---------CchhhhhhHHHHHH
Q 008806 144 SACGLFHIAYPSAPDILKTELRSIYTQLCQD----DMPMVRRSAAS--NLGKFAATV---------EPAHLKTDIMSIFE 208 (553)
Q Consensus 144 ~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d----~~~~Vr~~a~~--~l~~l~~~~---------~~~~~~~~l~p~l~ 208 (553)
.+...++.+.++.+....-.++..+-..... +...|+-.+.. ++....+++ +++.+...-+.++.
T Consensus 803 ta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~ 882 (2067)
T KOG1822|consen 803 TAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIV 882 (2067)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence 4566778888888877665555555554432 23344444443 333333322 23444444445555
Q ss_pred HhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch---HHH
Q 008806 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV-IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL---VPA 284 (553)
Q Consensus 209 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~-l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l---lp~ 284 (553)
..+...++..|..+.++++.++...+...+...+... +.++.+-.++-.|..-..++|.+-+..|.-...+++ +.+
T Consensus 883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 6677889999999999999999998887665554444 444555567777888888889888887654433444 347
Q ss_pred HHHhcCCCcH-HHHHHHHHHHHHHHHhhCHHHHHHhHHHHH----HHhccCCc--HHHHHHHHHHHH------hhhhhhC
Q 008806 285 YVRLLRDNEA-EVRIAAAGKVTKFCRILNPELAIQHILPCV----KELSSDSS--QHVRSALASVIM------GMAPLLG 351 (553)
Q Consensus 285 l~~ll~d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l----~~l~~d~~--~~vr~~~~~~l~------~l~~~~~ 351 (553)
+..+..|+.. .|+..++.++..+....++-.. -.+-+.+ .-+++++. ..++...-+++. .+...+|
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~-~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlg 1041 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMFR-VLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLG 1041 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCceeh-hhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcc
Confidence 7777788774 9999999999888776554321 1122222 22334333 345555444444 4444443
Q ss_pred HH----hH-------HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHH
Q 008806 352 KD----AT-------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420 (553)
Q Consensus 352 ~~----~~-------~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~ 420 (553)
++ .. ....+-...-++..+++.+..+++.++..+--.-....-.+.+++.+..++..+.--.|.+.+.+
T Consensus 1042 peL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~c 1121 (2067)
T KOG1822|consen 1042 PELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSC 1121 (2067)
T ss_pred cccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhh
Confidence 32 21 01111111112233467888889888888765443333336788888888888777777777777
Q ss_pred HHHHHh
Q 008806 421 IPLLAS 426 (553)
Q Consensus 421 l~~i~~ 426 (553)
+..++.
T Consensus 1122 lrql~~ 1127 (2067)
T KOG1822|consen 1122 LRQLVQ 1127 (2067)
T ss_pred hhHHhH
Confidence 766654
No 163
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.18 E-value=0.036 Score=52.62 Aligned_cols=103 Identities=24% Similarity=0.301 Sum_probs=74.1
Q ss_pred HHHHH-HHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCc-------
Q 008806 11 IAVLI-DELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV------- 81 (553)
Q Consensus 11 i~~ll-~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~------- 81 (553)
+..++ ..+++.|+.+|..|++.++-.+ .++.+- ..+-++.+.. ...++++++..+.+++..+.-..|..
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~-Lld~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCC-LLDKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-HhChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 33444 7888999999999999999875 344433 3344444444 55568899999999998776654431
Q ss_pred ----chhhcchhHHHhhhccchhHHHHHHHHHHHHHHh
Q 008806 82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGS 115 (553)
Q Consensus 82 ----~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~ 115 (553)
.....+..++.....++++++|..+++++.++.-
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 1224577777787778889999999999999653
No 164
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.14 E-value=0.053 Score=57.64 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=89.2
Q ss_pred CCChhHHHHHHHHHHHhhccC-Cc-----------c----hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 008806 213 DDQDSVRLLAVEGCAALGKLL-EP-----------Q----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (553)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~-~~-----------~----~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~ 276 (553)
..+..++..|+-+++.+.... .. . .+.+.+...+....+..+...+..++++||++..
T Consensus 446 ~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------ 519 (618)
T PF01347_consen 446 KNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------ 519 (618)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------
T ss_pred cCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------
Confidence 345678888888887776542 11 1 2223344444444556777888999999999863
Q ss_pred cccchHHHHHHhcCCC---cHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH
Q 008806 277 TRMDLVPAYVRLLRDN---EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353 (553)
Q Consensus 277 ~~~~llp~l~~ll~d~---~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (553)
+..++.+...+.+. ...+|.+|+++|..+... .++...+.++|.+..- ..+..+|.+|...+-.--+ .
T Consensus 520 --~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-~~~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm~~~P---~- 590 (618)
T PF01347_consen 520 --PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-CPEKVREILLPIFMNT--TEDPEVRIAAYLILMRCNP---S- 590 (618)
T ss_dssp --GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-T--TS-HHHHHHHHHHHHHT-------
T ss_pred --chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-CcHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCC---C-
Confidence 46788888888766 578999999999877443 3444445555554432 2346799888766655322 1
Q ss_pred hHHHhHHHHHHHhh-CCCChHHHHHHHHHH
Q 008806 354 ATIEQLLPIFLSLL-KDEFPDVRLNIISKL 382 (553)
Q Consensus 354 ~~~~~l~p~l~~~l-~d~~~~VR~~a~~~l 382 (553)
.. .+..+...+ .|++..|+...-..|
T Consensus 591 --~~-~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 591 --PS-VLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp --HH-HHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred --HH-HHHHHHHHHhhCchHHHHHHHHHhc
Confidence 12 233333333 677788887665544
No 165
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.92 E-value=0.12 Score=54.28 Aligned_cols=168 Identities=12% Similarity=0.062 Sum_probs=90.0
Q ss_pred hhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh----------hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhh
Q 008806 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA 152 (553)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----------~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l 152 (553)
....+.+++..-....++.+|..++-+++.+....-. +.+.+++...+....++.+...+...+..+|.+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 3334444433322234667888888888888763211 122223333333444445556677777777766
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhcc
Q 008806 153 YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (553)
Q Consensus 153 ~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~ 232 (553)
... .....+.+.+. --.+.+..+|.+|+.+|..++...+ +.+.+.+++++.. .+++.++|.+|+..+...-
T Consensus 474 g~~---~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p-~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~-- 544 (574)
T smart00638 474 GHP---SSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP-RKVQEVLLPIYLN--RAEPPEVRMAAVLVLMETK-- 544 (574)
T ss_pred CCh---hHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcC--
Confidence 531 12222222222 1123467899999999998876554 3455556665522 3467789998887765431
Q ss_pred CCcchhhhchHHHHHHhcCCCCHHHHHHHHH
Q 008806 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 263 (553)
Q Consensus 233 ~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~ 263 (553)
+.. ..+-.....+-.|++.+|+..+..
T Consensus 545 -P~~---~~l~~ia~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 545 -PSV---ALLQRIAELLNKEPNLQVASFVYS 571 (574)
T ss_pred -CCH---HHHHHHHHHHhhcCcHHHHHHhHH
Confidence 111 112222233445677777665543
No 166
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.66 Score=48.07 Aligned_cols=222 Identities=14% Similarity=0.124 Sum_probs=127.9
Q ss_pred HHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHH------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch--
Q 008806 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT------ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-- 197 (553)
Q Consensus 126 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~------~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~-- 197 (553)
.+..+....+..++.||..+++++..+..+-+.+..+ .-+..+..++.|....+|..+.-.|..+.+..+.-
T Consensus 123 ~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQK 202 (970)
T KOG0946|consen 123 NITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQK 202 (970)
T ss_pred hHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHH
Confidence 5666777788889999999999999999888877433 34577888899999999999999998888765531
Q ss_pred -hhhhhHHHHHHHhhhCC----ChhHHHHHHHHHHHhhcc-CCcchh--hhchHHHHHHhc-----CCC---CHHHHHH-
Q 008806 198 -HLKTDIMSIFEDLTQDD----QDSVRLLAVEGCAALGKL-LEPQDC--VAHILPVIVNFS-----QDK---SWRVRYM- 260 (553)
Q Consensus 198 -~~~~~l~p~l~~~~~d~----~~~vr~~a~~~l~~l~~~-~~~~~~--~~~ll~~l~~l~-----~d~---~~~vR~~- 260 (553)
...+-++.-+...+..+ ..-|-.-|+..+..+.+. .+...+ ...-+|-+.+++ .|. .|...+.
T Consensus 203 lVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~ 282 (970)
T KOG0946|consen 203 LVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQ 282 (970)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHH
Confidence 11223333333334332 235667777777777765 222211 112455555433 343 4544332
Q ss_pred HHHHHHHHHHH-hCCCc------------cccchHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhh--CHHHHHHhHHH-
Q 008806 261 VANQLYELCEA-VGPEP------------TRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRIL--NPELAIQHILP- 322 (553)
Q Consensus 261 ~~~~l~~l~~~-~~~~~------------~~~~llp~l~~ll~d~--~~~vr~~a~~~l~~~~~~~--~~~~~~~~l~~- 322 (553)
-...+-.+... +.+.. ....++..+...+.++ ..+|+..++-+++.+...- ..+.|.....|
T Consensus 283 Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~ 362 (970)
T KOG0946|consen 283 NVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPS 362 (970)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCC
Confidence 22222223322 22211 1234667776666655 3578887777777665532 11122221111
Q ss_pred ----------HHHHhc-cCCcHHHHHHHHHHHHhhh
Q 008806 323 ----------CVKELS-SDSSQHVRSALASVIMGMA 347 (553)
Q Consensus 323 ----------~l~~l~-~d~~~~vr~~~~~~l~~l~ 347 (553)
.+..+. +......|+++..++..+.
T Consensus 363 ~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 363 IPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred CCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 222222 3345678888888877654
No 167
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.88 E-value=0.15 Score=53.50 Aligned_cols=125 Identities=19% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCcc------ccchHHHHHHhc----CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHH
Q 008806 253 KSWRVRYMVANQLYELCEAVGPEPT------RMDLVPAYVRLL----RDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 322 (553)
Q Consensus 253 ~~~~vR~~~~~~l~~l~~~~~~~~~------~~~llp~l~~ll----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~ 322 (553)
.++.+|.++.-+++.++.....+.. .+.+++.+.+.+ ++.+.+.+..++.+||.++. ......+.|
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----~~~i~~l~~ 484 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----PSSIKVLEP 484 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----hhHHHHHHH
Confidence 4677899999999999875432221 134566665544 33455566777887776433 222334444
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008806 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (553)
Q Consensus 323 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~ 385 (553)
.+. .-.+.+..+|.+++.++..++...... ..+.+++++.+ .+.+++||.+|+..+-..
T Consensus 485 ~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 485 YLE-GAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVLMET 543 (574)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHHHhc
Confidence 443 122345789999999998887544433 23334444322 235678999887665433
No 168
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.83 E-value=0.072 Score=51.74 Aligned_cols=124 Identities=14% Similarity=0.180 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhcc------CCcHHHHHHHHHHHHhhhhhhCH---------------
Q 008806 294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS------DSSQHVRSALASVIMGMAPLLGK--------------- 352 (553)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~------d~~~~vr~~~~~~l~~l~~~~~~--------------- 352 (553)
...|.+|..-+..+++..+.. ..+.+...+..+++ ..+|+-+.+++..++.++.....
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~-v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQ-VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 356778888888888776543 22333333433332 46799999999999998764321
Q ss_pred HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHH
Q 008806 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420 (553)
Q Consensus 353 ~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~ 420 (553)
+++.+.+.|-+. --.+..+-+|..|++.+..+-..+..+.+ ..++|.+...+.+++.-|+.-|+.+
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCCCCcchhhhhhhh
Confidence 112233334333 11123455666666666666555554433 4455666666666655555554443
No 169
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.76 E-value=0.083 Score=57.11 Aligned_cols=216 Identities=18% Similarity=0.149 Sum_probs=123.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccccch------------HHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHH
Q 008806 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDL------------VPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAI 317 (553)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l------------lp~l~~ll~d~~-~~vr~~a~~~l~~~~~~~~~~~~~ 317 (553)
-++.|.+|..++-++.++....+.......+ +..+-....|+. ..||.+++++|+.+.+......+
T Consensus 87 ~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~- 165 (1549)
T KOG0392|consen 87 FEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLI- 165 (1549)
T ss_pred cCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhh-
Confidence 3456666666666666665554433221111 111112223332 57999999999999998766543
Q ss_pred HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH--HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch---h
Q 008806 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D 392 (553)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~ 392 (553)
...+..+.+++..++|.+|..-+..+-........ ......+++.+...++|.+..||..|+..+-.+...... .
T Consensus 166 ~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~ 245 (1549)
T KOG0392|consen 166 KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQ 245 (1549)
T ss_pred HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHh
Confidence 45666677777778999988776665544432111 122456778889999999999999999888777665511 1
Q ss_pred hH---HhhHHHHHHHhhcCCCcH---HHHHHHHHHHHH--HhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 393 LL---SQSLLPAIVELAEDRHWR---VRLAIIEYIPLL--ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 393 ~~---~~~ll~~l~~~~~d~~~~---vR~~~~~~l~~i--~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
.+ ...+...+.++ .|-.|. .|.-..+..... ............++|-++..+......||.++++.+..+.
T Consensus 246 ~i~~lv~~l~~~l~~l-ddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~ll 324 (1549)
T KOG0392|consen 246 KIAKLVHTLWSFLLEL-DDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLL 324 (1549)
T ss_pred HHHHHHHHHHHHHHHh-hhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12222222222 122221 111111111110 0000111112346777778888888899999999999998
Q ss_pred HHhC
Q 008806 465 EEFG 468 (553)
Q Consensus 465 ~~~~ 468 (553)
+.-+
T Consensus 325 e~~~ 328 (1549)
T KOG0392|consen 325 EADD 328 (1549)
T ss_pred hcCC
Confidence 7654
No 170
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.73 E-value=0.43 Score=43.32 Aligned_cols=192 Identities=13% Similarity=0.074 Sum_probs=105.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHH--
Q 008806 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE-- 326 (553)
Q Consensus 249 l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-- 326 (553)
+.+..++++.....+.|..++..-. ...+.++..+..+.+....+.+..+..-+..+.+.-+ .. .+.+-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~-f~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RH-FPFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hH-HHHHHHHHHHHH
Confidence 5556666666666666666665311 2123344444555555544554445554444443211 11 1223222222
Q ss_pred -------hccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh-CCCChHHHHHHHHHHHHhhhhhchhhH--Hh
Q 008806 327 -------LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLL--SQ 396 (553)
Q Consensus 327 -------l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l-~d~~~~VR~~a~~~l~~~~~~~~~~~~--~~ 396 (553)
.-.+..|.+..+.+.++..++...+. .-..+++.+..++ ++.++.++..+++.+..++..--.+.. -.
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~ 162 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK 162 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 11345688888888888888877665 3556788888999 788888999999999999853222211 12
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHHHHhh-hCh---hhhHHHHHHHHHHHccCCc
Q 008806 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LGV---GFFDDKLGALCMQWLQDKV 449 (553)
Q Consensus 397 ~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~-~~~---~~~~~~l~~~l~~~l~D~~ 449 (553)
.+.+.+ ..+..+.+-...+..+..+... ++. +.+...++..++++....+
T Consensus 163 vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 163 VLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 222222 2333444444444444433322 122 2344567777777776655
No 171
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.019 Score=52.26 Aligned_cols=171 Identities=14% Similarity=0.147 Sum_probs=113.4
Q ss_pred CcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHH----hhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcc
Q 008806 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT----RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE 82 (553)
Q Consensus 7 ~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~----~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 82 (553)
+=..+...+..|.++||.....++..+..++.-. ++.. .+.++..+..+......|-++++.+++.+...++...
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345778889999999999888888887775333 3332 2334444444787778899999999999887655421
Q ss_pred hhhcchhHHHhhh---ccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH
Q 008806 83 HAHVLLPPLETLC---TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (553)
Q Consensus 83 ~~~~l~~~l~~l~---~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 159 (553)
...+-.++..|+ .+++..||..|-.+|..+..+..+..+... +.....+.++.+|..++..+.....+++-.
T Consensus 165 -~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~----L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~ 239 (334)
T KOG2933|consen 165 -DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRK----LIPILQHSNPRVRAKAALCFSRCVIRLGVL 239 (334)
T ss_pred -HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHH----HHHHHhhhchhhhhhhhccccccceecccc
Confidence 112222333332 355778999999999999988876554444 444455567888988888888887777522
Q ss_pred -----HHHHHHHHHHHhcCCCCHHHHHHH
Q 008806 160 -----LKTELRSIYTQLCQDDMPMVRRSA 183 (553)
Q Consensus 160 -----~~~~l~~~l~~ll~d~~~~Vr~~a 183 (553)
...++.+.+.+-..|.-+.+|+++
T Consensus 240 ~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a 268 (334)
T KOG2933|consen 240 PVLLQGSCDLSRAAQEQGSDKLPELREAA 268 (334)
T ss_pred chhhHhHHHHHHHHHhhhcccccccccch
Confidence 334455555555666666666543
No 172
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=1.1 Score=46.48 Aligned_cols=294 Identities=14% Similarity=0.124 Sum_probs=161.3
Q ss_pred hhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccc-hhHHHHHHHHHHHHHHhhc--Chhhhh
Q 008806 47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQM--RESDLV 123 (553)
Q Consensus 47 ~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~--~~~~~~ 123 (553)
..++|-+..-.+...-.|+.++-.+|..+..--..+....+...+.++++|. |..||-.+..++....+.. .++.+.
T Consensus 487 ~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFl 566 (978)
T KOG1993|consen 487 EALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFL 566 (978)
T ss_pred HhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhh
Confidence 4555555543334456889999999887763333334444555667777777 7788999999998888743 344443
Q ss_pred hh---HHHHHHHHhcC-CCcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhh
Q 008806 124 DW---YIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ--DDMPMVRRSAASNLGKFAATV 194 (553)
Q Consensus 124 ~~---~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~--d~~~~Vr~~a~~~l~~l~~~~ 194 (553)
++ +...+.++... ...+.|......++.+..+.++. +...++..+..+.+ ...+-.|.+...+|.++...+
T Consensus 567 p~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~al 646 (978)
T KOG1993|consen 567 PYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNAL 646 (978)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHh
Confidence 33 22222333332 34567888888888888777665 45566666666554 357789999999999999998
Q ss_pred Cch--hhhhhHHHHHHHhhhCC-C---hhHHHHHHHHHHHhhccCCc-chhhhchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008806 195 EPA--HLKTDIMSIFEDLTQDD-Q---DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267 (553)
Q Consensus 195 ~~~--~~~~~l~p~l~~~~~d~-~---~~vr~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~ 267 (553)
|.+ ...+.+.|.+.. ..|. + ...-+-+++.+.......+. ....-.++|.+...++-.....|. +.+.+..
T Consensus 647 g~qS~~~~~fL~pVIel-~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~t-~l~Ii~s 724 (978)
T KOG1993|consen 647 GAQSFEFYPFLYPVIEL-STDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLPT-VLMIISS 724 (978)
T ss_pred ccCCccchHHHHHHHHH-hcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHH
Confidence 863 455667776543 3343 2 23445567777666655432 111223566666555544433332 2333333
Q ss_pred HHHHhCCCcccc---chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-------CHHHHHHhHHHHHHHh--ccCCcHHH
Q 008806 268 LCEAVGPEPTRM---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-------NPELAIQHILPCVKEL--SSDSSQHV 335 (553)
Q Consensus 268 l~~~~~~~~~~~---~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~-------~~~~~~~~l~~~l~~l--~~d~~~~v 335 (553)
.+-.-+..+.+. .+...+..++ .+||.....++-.+.+.+ |+.. ..-++|.+... .+++.+.+
T Consensus 725 YilLd~~~fl~~y~~~i~k~~~~~l----~dvr~egl~avLkiveili~t~~il~~~~-~~~~L~~lf~~I~~~~~yP~~ 799 (978)
T KOG1993|consen 725 YILLDNTVFLNDYAFGIFKKLNDLL----DDVRNEGLQAVLKIVEILIKTNPILGSLL-FSPLLSRLFLSIAENDKYPYV 799 (978)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHhhhHHHHhhh-cchhhHHHHHHHHhCCCCchh
Confidence 322222222111 2333333333 345555544444433321 2111 12334444322 25566666
Q ss_pred HHHHHHHHHhhh
Q 008806 336 RSALASVIMGMA 347 (553)
Q Consensus 336 r~~~~~~l~~l~ 347 (553)
-...+..++.+.
T Consensus 800 ~~~yl~vvaRi~ 811 (978)
T KOG1993|consen 800 MGEYLLVVARIS 811 (978)
T ss_pred HHHHHHHHHHHH
Confidence 655555555543
No 173
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.58 E-value=2.1 Score=51.31 Aligned_cols=452 Identities=18% Similarity=0.203 Sum_probs=219.7
Q ss_pred HHhcCccHHHHHHHhhhHHHHHHhh------ChHHH--hhhhhhhhhh--cCCCcHHHHHHHHHHhh-ccccccCCcchh
Q 008806 16 DELKNDDIQLRLNSIRRLSTIARAL------GEERT--RKELIPFLSE--NNDDDDEVLLAMAEELG-VFIPYVGGVEHA 84 (553)
Q Consensus 16 ~~L~~~d~~~R~~a~~~l~~i~~~~------~~~~~--~~~ll~~l~~--~~d~~~~vr~~~~~~l~-~l~~~~~~~~~~ 84 (553)
..++++|...|..+...+..+.+.. .|... .+.++..+.. ..|.++.+|......+. .+.+... .
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~la----Q 563 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLA----Q 563 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhc----C
Confidence 4566778888888865554433221 12222 4455555555 56778888777766665 1111111 1
Q ss_pred hcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHH----hcCCC----cchhhhHhhhhHhhcCC-
Q 008806 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL----AAGEW----FTARVSACGLFHIAYPS- 155 (553)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~----~~~~~----~~~r~~~~~~l~~l~~~- 155 (553)
...+..+.....++.-.++..+...++.++...+ .+++|.+... .++-. ..+...+...+..+...
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS 638 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Confidence 2233334444556666777777766666665433 3344444322 11111 11112222222222111
Q ss_pred --CChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchh--hhhhHHHHHHHhhhCC-ChhHHHHHHHHHHHhh
Q 008806 156 --APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALG 230 (553)
Q Consensus 156 --~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~~~d~-~~~vr~~a~~~l~~l~ 230 (553)
....+...++..+...+.|+++.+-+++..+++.++...|.+. ..+.+++.+.+.+.|. +..-|.++.++++.+.
T Consensus 639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 1112445566777777888999999999999999998877322 2236666666666654 3455777788888877
Q ss_pred ccCCc----chhhhchHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHhC-------------------CC-----------
Q 008806 231 KLLEP----QDCVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEAVG-------------------PE----------- 275 (553)
Q Consensus 231 ~~~~~----~~~~~~ll~~l~-~l~~d~~~~vR~~~~~~l~~l~~~~~-------------------~~----------- 275 (553)
..-+- ....+.++..+. .+.......+|..+.+.++..+..-+ ..
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 798 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTSASKISSEQIKSDIDISLLESGV 798 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhhhHhhhhccccccchHHHHHhhh
Confidence 65322 122233333332 23333344455555555443221100 00
Q ss_pred ------ccccchHHHHHHhcCCCcHHHH-HHHHHHHHHHHHhhCH--HHHHHhHHHHH----------------------
Q 008806 276 ------PTRMDLVPAYVRLLRDNEAEVR-IAAAGKVTKFCRILNP--ELAIQHILPCV---------------------- 324 (553)
Q Consensus 276 ------~~~~~llp~l~~ll~d~~~~vr-~~a~~~l~~~~~~~~~--~~~~~~l~~~l---------------------- 324 (553)
.+.-.-+-.+...++|+..... ...+.+...+....|. ..+.+.++|.+
T Consensus 799 ~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~ 878 (2341)
T KOG0891|consen 799 NPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSL 878 (2341)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhh
Confidence 0000001111122222210000 0011111111111000 01112222211
Q ss_pred ---------------HHhccCCcH---HHHHHHHHHHHhhhhhhCHHhH--HHhHHHHHHHhh---CCCChHHHHHHHHH
Q 008806 325 ---------------KELSSDSSQ---HVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLL---KDEFPDVRLNIISK 381 (553)
Q Consensus 325 ---------------~~l~~d~~~---~vr~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l---~d~~~~VR~~a~~~ 381 (553)
..+..+-++ .+...+...+..+...++.++. .+...+..+..+ ++.+..+-...+..
T Consensus 879 ~~~~~~h~~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~~~~~~~~~~ 958 (2341)
T KOG0891|consen 879 VAIVRQHIRPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDRVVSRKVLQS 958 (2341)
T ss_pred hhccchhHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeecccccchHHHHHHhhHH
Confidence 111111111 1222223333344444444332 111122111111 12222233333333
Q ss_pred HHHhhhhhchhhHHhhHHHHHHHhhcCC--CcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHH
Q 008806 382 LDQVNQVIGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (553)
Q Consensus 382 l~~~~~~~~~~~~~~~ll~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~ 459 (553)
+........ .....++|.+.+++.++ ....|..+...++.++.......+..++.-.+++.+.-. .+++......
T Consensus 959 ~~~~~~~~~--~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~ 1035 (2341)
T KOG0891|consen 959 LQKFGSNLE--QYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDT 1035 (2341)
T ss_pred HHhcCccHH--hhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHH
Confidence 333333222 22356777888888877 577889999999988887766666666666667776666 9999999999
Q ss_pred HHHHHHHhChhHHhhhhhhhhh
Q 008806 460 LKRLAEEFGPEWAMQHITPQKS 481 (553)
Q Consensus 460 l~~l~~~~~~~~~~~~i~p~l~ 481 (553)
++.+....|..+ ..+.|.+.
T Consensus 1036 l~~l~~~~~~~~--~i~~p~~~ 1055 (2341)
T KOG0891|consen 1036 LIALVKQLGKDF--AIFIPMVN 1055 (2341)
T ss_pred HHHHHHhhcCce--eehHHHHH
Confidence 999999998764 34555554
No 174
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.56 E-value=0.034 Score=41.66 Aligned_cols=81 Identities=16% Similarity=0.005 Sum_probs=64.4
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHhhhC-hhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhh
Q 008806 402 IVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQK 480 (553)
Q Consensus 402 l~~~~~d~~~~vR~~~~~~l~~i~~~~~-~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l 480 (553)
....+.|+...+|..++..+..+...-. ...-.+.++..++..+.|+++-|-.+|++++..++...+ +.++|.|
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~~L 82 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLPIL 82 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHHHH
Confidence 3445578888899999999988887766 333456788888899999999999999999999998765 4678888
Q ss_pred hhhhhhh
Q 008806 481 SHVLDCC 487 (553)
Q Consensus 481 ~~~l~~~ 487 (553)
.+...+.
T Consensus 83 ~~~y~~~ 89 (92)
T PF10363_consen 83 LDEYADP 89 (92)
T ss_pred HHHHhCc
Confidence 7776543
No 175
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.45 E-value=0.09 Score=45.07 Aligned_cols=106 Identities=16% Similarity=0.109 Sum_probs=65.1
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhhhhhchh-------------------h---HHhhHHHHHHHhhc-CCCcHHHHHHH
Q 008806 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGID-------------------L---LSQSLLPAIVELAE-DRHWRVRLAII 418 (553)
Q Consensus 362 ~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-------------------~---~~~~ll~~l~~~~~-d~~~~vR~~~~ 418 (553)
++.-+++|+++.||.+|+.++..+.+....- . ...++-..|...+. +.+..+-...+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3444556677777777777766665542110 0 00122222333333 34666777788
Q ss_pred HHHHHHHhhhChhh----hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 419 EYIPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 419 ~~l~~i~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
+++..+.....-.. +...++..+..++.+.+.+||.+++-+++.+....
T Consensus 124 K~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 124 KCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 88888877654433 33455666667788899999999999999888654
No 176
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=96.43 E-value=0.87 Score=43.17 Aligned_cols=242 Identities=16% Similarity=0.150 Sum_probs=124.2
Q ss_pred hhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhh---------
Q 008806 142 RVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ--------- 212 (553)
Q Consensus 142 r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~--------- 212 (553)
+..|.+.++....+++. .-++.+..-..+|+|.+..||++|.+.|+.+|+. +....+.|.+.++++
T Consensus 41 k~lasq~ip~~fk~fp~-la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~sl~~Lf~ 115 (460)
T KOG2213|consen 41 KRLASQFIPRFFKHFPS-LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKASLTGLFG 115 (460)
T ss_pred HHHHHHHHHHHHhhCch-hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHHHHHHHh
Confidence 33445555555555433 3455677778889999999999999999999874 333344444433332
Q ss_pred ---CCChhHHHHHHHHHHHhhccCCc----chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc---hH
Q 008806 213 ---DDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD---LV 282 (553)
Q Consensus 213 ---d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~---ll 282 (553)
-.+..+|+.+...+..=.-.++. +....++...+.+.+.|..-.-=......|+.+-. ++....... +.
T Consensus 116 ~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~-~~~k~~~a~lqeLa 194 (460)
T KOG2213|consen 116 QIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKS-LQTKAGEARLQELA 194 (460)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc-ccCCCCHHHHHHHH
Confidence 23677888777666432222222 23334566667777777654433333333333322 121111111 22
Q ss_pred HHHHHh-----cCCCcHHHH----HHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCc-HHHHHHHHHHHHhhhhhhCH
Q 008806 283 PAYVRL-----LRDNEAEVR----IAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK 352 (553)
Q Consensus 283 p~l~~l-----l~d~~~~vr----~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~-~~vr~~~~~~l~~l~~~~~~ 352 (553)
...-.+ +.-+|+++- ..+..++..+++..+...+...+...+.....|.. ...+-.+++++..++....
T Consensus 195 ~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~tt- 273 (460)
T KOG2213|consen 195 EEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTT- 273 (460)
T ss_pred HHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccch-
Confidence 222111 122233332 23344445555555555555554444443333333 3455567778877776653
Q ss_pred HhHHHhHHHHHHHhhC------CCChHHHHHHHHHHHHhhhhhc
Q 008806 353 DATIEQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIG 390 (553)
Q Consensus 353 ~~~~~~l~p~l~~~l~------d~~~~VR~~a~~~l~~~~~~~~ 390 (553)
.....+.+|.+.++|+ |..++....-++++..+...+|
T Consensus 274 aq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 274 AQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 2235566777777764 3334444444444444444444
No 177
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.38 E-value=0.032 Score=41.85 Aligned_cols=70 Identities=24% Similarity=0.235 Sum_probs=47.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhC-chhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 234 (553)
+......++|+.+.||..+...|..++..-. .....+.++..+.+.++|++..|=..|++++..++...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 3344455677777777777777777776555 333445677777777777777777777777777776543
No 178
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.34 E-value=0.032 Score=47.12 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=50.3
Q ss_pred HHHHhHHHHHHHhccCCc-HHHHHHHHHHHHhhhhhhCHHh--HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhh
Q 008806 315 LAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (553)
Q Consensus 315 ~~~~~l~~~l~~l~~d~~-~~vr~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~ 388 (553)
.+....+..+...++|++ ...+.+++.++..+.+..|... +.++++|.+...++......|+..+..|+.++..
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 334455566666777765 3444566777777766555443 3678888888888877778888888887777654
No 179
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=1.3 Score=44.19 Aligned_cols=315 Identities=14% Similarity=0.120 Sum_probs=169.8
Q ss_pred HHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHh--hhCchhhhh--hHHHHHHHhhhCCChhHHHHHHHHHHHhhccC
Q 008806 161 KTELRSIYTQLCQDD---MPMVRRSAASNLGKFAA--TVEPAHLKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (553)
Q Consensus 161 ~~~l~~~l~~ll~d~---~~~Vr~~a~~~l~~l~~--~~~~~~~~~--~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 233 (553)
...++..+..++++. +..+-..+.++++.... .++++.+.. .++....+.++ ++..-..|.+++..+....
T Consensus 151 ~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~ 228 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLYCS 228 (559)
T ss_pred HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHh
Confidence 344566666666543 35566777777777665 344443332 23334444445 3444455555554433321
Q ss_pred -Ccch---h------hhchHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHH---HHHHhcCCCcHHHH
Q 008806 234 -EPQD---C------VAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVP---AYVRLLRDNEAEVR 297 (553)
Q Consensus 234 -~~~~---~------~~~ll~~l~~l-~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~llp---~l~~ll~d~~~~vr 297 (553)
..+. + ...++|...++ ....+...+.+.++.+..++..+-.... .+..++ .++-.-..++.+|-
T Consensus 229 ~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evi 308 (559)
T KOG2081|consen 229 LDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVI 308 (559)
T ss_pred hhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhh
Confidence 1111 1 11233333332 2344556777888888888776521110 112333 33333455666666
Q ss_pred HHHHHHHHHHHHhh---CHHHHHH-------hHHHHHHHhcc------------CCcHHHHHHHHHHHHhhhhhhCHHhH
Q 008806 298 IAAAGKVTKFCRIL---NPELAIQ-------HILPCVKELSS------------DSSQHVRSALASVIMGMAPLLGKDAT 355 (553)
Q Consensus 298 ~~a~~~l~~~~~~~---~~~~~~~-------~l~~~l~~l~~------------d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (553)
.+.....-.+.+.+ ....... .++..+..-++ +.-...|..+...+-..+-..|.+..
T Consensus 309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~ 388 (559)
T KOG2081|consen 309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDEC 388 (559)
T ss_pred hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 55544444444332 1111111 22222222111 11246788888888888877887654
Q ss_pred HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcC--CCcHHHHHHHHHHHHHHhhhChhh-
Q 008806 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF- 432 (553)
Q Consensus 356 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~~~~- 432 (553)
.+.+.-.+.+ +..+++.-++++..+..+.+.+.++. ..++|.+.++.-+ ....+|.+++..+|.+.+.+....
T Consensus 389 lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~ 464 (559)
T KOG2081|consen 389 LKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPE 464 (559)
T ss_pred HHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcH
Confidence 4433222222 45678889999999999988877654 5677777766543 234589999999999988876653
Q ss_pred hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhh
Q 008806 433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLD 485 (553)
Q Consensus 433 ~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~ 485 (553)
+.+-+...+...+++.. .-.+++.++..++..+..+ ....+|.+...+.
T Consensus 465 ~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~--~~~l~~~~~~l~~ 513 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQ--MTCLIPSLLELIR 513 (559)
T ss_pred HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 33444555666666654 5555566666666655433 2345666555443
No 180
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.24 E-value=0.15 Score=43.43 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=81.3
Q ss_pred HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH---HhhHHHHHHHhhcCCCcHHHHHHHHHHHHH---HhhhC
Q 008806 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLL---ASQLG 429 (553)
Q Consensus 356 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~---~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i---~~~~~ 429 (553)
....+|++...+.+....-|--|...+..+...-+.+.+ .+++++-+...++..+..+..+++.++..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 467899999999888888888888888888877333332 255566667778889999999999999999 55566
Q ss_pred hh--hhHHHHHHHHHHHcc-----------CCchHHHHHHHHHHHHHHHHhChh
Q 008806 430 VG--FFDDKLGALCMQWLQ-----------DKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 430 ~~--~~~~~l~~~l~~~l~-----------D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
+. .+..+++|.+-.+.+ ....+++...-++|..+-.+-|++
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 54 345566666542221 133567777777777777777765
No 181
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.22 E-value=0.052 Score=46.52 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHH
Q 008806 101 CVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180 (553)
Q Consensus 101 ~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr 180 (553)
.||..|+.++..+++..++..+-.+ ...++-|....-+.. -.+.+.-++.|+++.||
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~y----W~~llP~~~~~~~~~-------------------~~sLlt~il~Dp~~kvR 57 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGY----WPALLPDSVLQGRPA-------------------TPSLLTCILKDPSPKVR 57 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhh----HHHHCCCCCCcCCCC-------------------CcchhHHHHcCCchhHH
Confidence 4799999999999998776443222 222222210000000 01233344778999999
Q ss_pred HHHHHHHHHHHhhhCc-----hhh----------h----hhHHH---HHHHhh-hCCChhHHHHHHHHHHHhhccCCcch
Q 008806 181 RSAASNLGKFAATVEP-----AHL----------K----TDIMS---IFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQD 237 (553)
Q Consensus 181 ~~a~~~l~~l~~~~~~-----~~~----------~----~~l~p---~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (553)
.+++..+..+.+.... ++. . ..+.. .+...+ .+.+..+-...++++..+....+...
T Consensus 58 ~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r 137 (182)
T PF13251_consen 58 AAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR 137 (182)
T ss_pred HHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh
Confidence 9999888888765321 000 0 00111 111112 23345555566666666666554432
Q ss_pred h----hhchHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 008806 238 C----VAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (553)
Q Consensus 238 ~----~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~ 270 (553)
. ...++..+..++.+.+..+|.++..+++.+..
T Consensus 138 L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 138 LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 2 22333444445555666666666666665553
No 182
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=96.20 E-value=0.59 Score=44.24 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCc-hHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhh
Q 008806 415 LAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLD 485 (553)
Q Consensus 415 ~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~-~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~ 485 (553)
+++..++..+++......|..++-..++..-.|.. .+.+...+++|..|......+. ....+|.+.+++.
T Consensus 219 sCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~-a~q~Lpsi~elLk 289 (460)
T KOG2213|consen 219 SCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQA-ARQMLPSIVELLK 289 (460)
T ss_pred HHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHH-HHHHHHHHHHHHH
Confidence 44555566666666665555554444333334433 3455666777777776664332 3466676666665
No 183
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.18 E-value=0.081 Score=44.68 Aligned_cols=142 Identities=12% Similarity=0.120 Sum_probs=85.5
Q ss_pred HhHHHHHHHhcc-CCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC-----CCChHHHHHHHHHHHHhhhhhch
Q 008806 318 QHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGI 391 (553)
Q Consensus 318 ~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-----d~~~~VR~~a~~~l~~~~~~~~~ 391 (553)
+.+++.+..+++ +.+|.+|..+++.+|.++.. ++.... ....... +.+...........+. .....
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP~~~k-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~e 80 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGAL-DPYKHK-----SIQKSLDSKSSENSNDESTDISLPMMGI--SPSSE 80 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-CcHHHh-----cccccCCccccccccccchhhHHhhccC--CCchH
Confidence 566777766664 45699999999999888742 222111 1111111 1111122211110000 00123
Q ss_pred hhHHhhHHHHHHHhhcCCC-cHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 392 DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 392 ~~~~~~ll~~l~~~~~d~~-~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
+.+...++..|...++|++ ...+.+++.++..+.+..|.. .|.+.++|.++..++......|+....-|+.++...
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv 159 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 4444666777777888875 345567888888888776654 467889999999888777789998888888877643
No 184
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.11 E-value=0.41 Score=46.58 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHH
Q 008806 215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 263 (553)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~ 263 (553)
.+-+|..|++.+..+-..++++.. ..++|.+...+.+++.-|+..++.
T Consensus 321 ~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 321 HPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp -HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCCCCcchhhhhhh
Confidence 344555555555555555444322 335555555555555555544443
No 185
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.02 E-value=1.1 Score=40.58 Aligned_cols=192 Identities=15% Similarity=0.168 Sum_probs=109.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHH--
Q 008806 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-- 248 (553)
Q Consensus 171 ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-- 248 (553)
+-+..++.+.....++|+.++..-. .....++..+..+.+.+....+..+...+..+-..-+. ..+.+-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HFPFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HHHHHHHHHHHHH
Confidence 5666777788888888877776431 33344555555555555555555555555554432111 11222222222
Q ss_pred -------hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhh--CHHHHHH
Q 008806 249 -------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRIL--NPELAIQ 318 (553)
Q Consensus 249 -------l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll-~d~~~~vr~~a~~~l~~~~~~~--~~~~~~~ 318 (553)
.-.+..|....+.+.++..++...+.. -..+++.+.+.+ ++.++.++..+++.+..+++.- +-.....
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~--g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~ 162 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPDH--GVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK 162 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChhh--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 123456778888888999999887662 246889999999 7888889999999999988532 2112223
Q ss_pred hHHHHHHHhccCCcHHHHHHHHHHHHhhhhhh-C---HHhHHHhHHHHHHHhhCCCC
Q 008806 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLL-G---KDATIEQLLPIFLSLLKDEF 371 (553)
Q Consensus 319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~-~---~~~~~~~l~p~l~~~l~d~~ 371 (553)
.+.+.+ -.+..+.+-...+..+.-+...- + .+.+...++..+.+.....+
T Consensus 163 vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 163 VLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 333333 23444555555444444333211 1 11224456666666665554
No 186
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.01 E-value=0.53 Score=51.30 Aligned_cols=170 Identities=19% Similarity=0.214 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHhhCHHHH--HHhHHH----HHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH-HHhHHHHHHHhhC
Q 008806 296 VRIAAAGKVTKFCRILNPELA--IQHILP----CVKELSSDSSQHVRSALASVIMGMAPLLGKDAT-IEQLLPIFLSLLK 368 (553)
Q Consensus 296 vr~~a~~~l~~~~~~~~~~~~--~~~l~~----~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~-~~~l~p~l~~~l~ 368 (553)
-|..|-.+|..+++.+|...+ ..++-. .+.......+ --......+..+....+.... .-...|.+..++.
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d--~~~~s~~vf~s~~~~m~s~l~~~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND--EFLSSFEVFNSLAPLMHSFLHPLGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc--chhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence 377888889999999887632 122222 2222222221 111112222222222222211 1245677888888
Q ss_pred CCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHH-HHHHHHHHHHHHhhhCh--hhhHHHHHHHHHHHc
Q 008806 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV-RLAIIEYIPLLASQLGV--GFFDDKLGALCMQWL 445 (553)
Q Consensus 369 d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~v-R~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l 445 (553)
..+..+|.+++++++.+.+....+.. ..++..+..++++.+.-+ |..+.+.+..+....+. -.+..-++|.++..+
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~m 905 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRM 905 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhccc
Confidence 89999999999999999886655543 344455555556654444 45555666665554433 345566788999999
Q ss_pred cCCchHHHHHHHHHHHHHHHHhC
Q 008806 446 QDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 446 ~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
+|....||.+|-+++..++...+
T Consensus 906 sd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 906 SDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred ccchHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999987653
No 187
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.21 Score=46.80 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=84.1
Q ss_pred cCccHHHHHHHhhhHHHHHHhhChHHH---hhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcc--h--hhcchhHH
Q 008806 19 KNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE--H--AHVLLPPL 91 (553)
Q Consensus 19 ~~~d~~~R~~a~~~l~~i~~~~~~~~~---~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~--~~~l~~~l 91 (553)
.+.+.+.|..|...|...+..++.... ...+.+++..++++++++|..++.+++..++..+..+ . ...+-.++
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 366778888898888888777665332 2234444444788899999999999998887544311 1 12334455
Q ss_pred HhhhccchhHHHHHHHHHHHHHHhhcChhhh---hhhHHHHHHHHhcC--CCcchhhhHhhhhHhhc
Q 008806 92 ETLCTVEETCVRDKAVESLCRIGSQMRESDL---VDWYIPLVKRLAAG--EWFTARVSACGLFHIAY 153 (553)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~~~~--~~~~~r~~~~~~l~~l~ 153 (553)
..+..+.+.++|..|+.++..++.+.++-.. .-.-...+....++ .+...+.-++.+++.+.
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 5666777888999999999999988765321 11123344444444 33333444444444443
No 188
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.95 E-value=1.8 Score=42.24 Aligned_cols=171 Identities=14% Similarity=0.060 Sum_probs=84.9
Q ss_pred chhhhHhhhhHhhcCC--CChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChh
Q 008806 140 TARVSACGLFHIAYPS--APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS 217 (553)
Q Consensus 140 ~~r~~~~~~l~~l~~~--~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~ 217 (553)
.-|..|.+++-.+... ...+.-..+...+..+.++++...|..+.+.+.+++-.-+.-.....-+..+...+.|+..+
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHh
Confidence 3466666665555443 22223344556666666667777777777777777654332212222233444444454444
Q ss_pred HHHHHHHHHHHhhccCCc------chhhhchHHHHHHh----cCCCCH-HHHHHHHHHHHHHHHHhCCCc----cccchH
Q 008806 218 VRLLAVEGCAALGKLLEP------QDCVAHILPVIVNF----SQDKSW-RVRYMVANQLYELCEAVGPEP----TRMDLV 282 (553)
Q Consensus 218 vr~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~l----~~d~~~-~vR~~~~~~l~~l~~~~~~~~----~~~~ll 282 (553)
+-...+.++-.+...-.. ....+.++..+... .++... ..-..+..++..+.++.+.-. ....-+
T Consensus 163 ~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l 242 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL 242 (371)
T ss_pred HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence 444444444444332111 01111222222222 122221 233444555666665543211 011456
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 008806 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRI 310 (553)
Q Consensus 283 p~l~~ll~d~~~~vr~~a~~~l~~~~~~ 310 (553)
..++..+.-+.+++|...+..+-.+...
T Consensus 243 ksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 243 KSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 6777777788888888888877666553
No 189
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=1.2 Score=45.36 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=145.2
Q ss_pred HHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHH
Q 008806 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS 205 (553)
Q Consensus 126 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p 205 (553)
.+..+.+.+-.++..++..+.-.+|.......+ ..+..+-.+...+++++..+|.++.-.||..-....++.+...+.|
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~n-e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~P 494 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFN-ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSP 494 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccc-ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhH
Confidence 445555555555555665555444443333222 3455677788888899999999998888866555555555545555
Q ss_pred HHHHhhhCCChh--HHHHHHHHHHHhhccCCcchhhhchHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 008806 206 IFEDLTQDDQDS--VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTRMDL 281 (553)
Q Consensus 206 ~l~~~~~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~--~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 281 (553)
+ +.|.+.. |...|.-+++.+.-..-.++....++..+..-. +-.+...|-.+ ||--.-.+|.+ ..
T Consensus 495 i----~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~---LGL~llflgkq----e~ 563 (878)
T KOG2005|consen 495 I----MFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLA---LGLALLFLGKQ----ES 563 (878)
T ss_pred H----hcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHH---HHHHHHHhccc----ch
Confidence 4 5565544 555555555554433222333333333333221 12233344321 22222223332 12
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhH-HHHHHHhccCCcHH---HHHHHHHHHHhhhhhhCHHhHHH
Q 008806 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI-LPCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATIE 357 (553)
Q Consensus 282 lp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l-~~~l~~l~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~~ 357 (553)
.......++.-+..+|+.+ ..+-..|.+.|..... .+ -..+..++.++... ...-+. ++.-.-.+|.+.-.+
T Consensus 564 ~d~~~e~~~~i~~~~~~~~-~~lv~~caYaGTGnvl-~Iq~q~ll~~cgE~~~~~e~~~~~av--LgiAliAMgeeig~e 639 (878)
T KOG2005|consen 564 VDAVVETIKAIEGPIRKHE-SILVKSCAYAGTGNVL-KIQSQLLLSFCGEHDADLESEQELAV--LGIALIAMGEEIGSE 639 (878)
T ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHHhhccccCceE-EechhhhhhhcCCCccchhhhccchh--hhhhhhhhhhhhhhH
Confidence 2222222222222233322 2233334444433211 01 01222333332211 111111 111111244444445
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh
Q 008806 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (553)
Q Consensus 358 ~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~ 431 (553)
..+..+-.++.=.++.+|++.=-+++-++-. .-+-.++..|.++..|.+..+-.+++.++|-++..-...
T Consensus 640 M~lR~f~h~l~yge~~iRravPLal~llsvS----NPq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNA 709 (878)
T KOG2005|consen 640 MVLRHFGHLLHYGEPHIRRAVPLALGLLSVS----NPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNA 709 (878)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhccC----CCcchHHHHHHHhccCcchHHHHHHHHHhccccCCcchH
Confidence 5667777888778889999887777765431 122467888899999999999999998888777655444
No 190
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.78 E-value=2.6 Score=42.80 Aligned_cols=257 Identities=14% Similarity=0.041 Sum_probs=137.1
Q ss_pred CcHHHHHHHhc-----CccHHHHHHHhhhHHHHHHhhCh--HHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCC
Q 008806 9 YPIAVLIDELK-----NDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG 80 (553)
Q Consensus 9 ~~i~~ll~~L~-----~~d~~~R~~a~~~l~~i~~~~~~--~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~ 80 (553)
.++..+...-+ +...+.|..+.+.+..+.++-+. ...+..+...+.. -.+++-..|-.+...|.+=.+.+..
T Consensus 24 ~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~ 103 (464)
T PF11864_consen 24 SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDIDF 103 (464)
T ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchh
Confidence 45555553333 34557899999999988765543 2335555555555 4445556777777777654443322
Q ss_pred cchhhcchhHHHhhhccc---------------------------hhHHHHHHHHHHHHHHhhcC---hhhhhhhHHHHH
Q 008806 81 VEHAHVLLPPLETLCTVE---------------------------ETCVRDKAVESLCRIGSQMR---ESDLVDWYIPLV 130 (553)
Q Consensus 81 ~~~~~~l~~~l~~l~~~~---------------------------~~~vR~~a~~~l~~l~~~~~---~~~~~~~~l~~l 130 (553)
+...+.|++...+..- +...-...+..+..++++-. ++.....++..+
T Consensus 104 --~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i 181 (464)
T PF11864_consen 104 --FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQI 181 (464)
T ss_pred --cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 3344555544333211 11111123333444444322 222233344444
Q ss_pred HHHhcCCC-cchhhhHhhhhHhhc--CCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHH
Q 008806 131 KRLAAGEW-FTARVSACGLFHIAY--PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207 (553)
Q Consensus 131 ~~~~~~~~-~~~r~~~~~~l~~l~--~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l 207 (553)
...+...+ ...-..+...+..+. ..++.+....++..+.....-. ...+.+-+.+.++++.-........+..++
T Consensus 182 ~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL 259 (464)
T PF11864_consen 182 CTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHSAIRTLCDIL 259 (464)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 44444333 333367777787764 4567777777777776653322 566666777777775432233333333333
Q ss_pred H--HhhhCCChhHHHHHHHHHHHhhccCCcchh----hh--chHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 008806 208 E--DLTQDDQDSVRLLAVEGCAALGKLLEPQDC----VA--HILPVIVNFSQDKSWRVRYMVANQLYELC 269 (553)
Q Consensus 208 ~--~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~--~ll~~l~~l~~d~~~~vR~~~~~~l~~l~ 269 (553)
. ..-..++..+-..|+..+..+.-..+.+.. .. .++|.+...++..+..|-..+...+..+.
T Consensus 260 ~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 260 RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 1 111123445666888888877655433221 12 27888888887776666666666666655
No 191
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.69 E-value=3 Score=42.83 Aligned_cols=107 Identities=17% Similarity=0.078 Sum_probs=75.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh--------HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh
Q 008806 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (553)
Q Consensus 360 ~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~--------~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~ 431 (553)
+..+.++|..++...|.+.++..+.++..+..+. -...++..+.+-+.|.++-+|..+++.+..+...-...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 4566777888888888888888888776543211 11456666777778888889988888887776432221
Q ss_pred h-hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 432 F-FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 432 ~-~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
. -...+...+...++|++.-||..|++.++.+...
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~ 416 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR 416 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence 1 1245667777888999999999999988887754
No 192
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=3.9 Score=44.71 Aligned_cols=130 Identities=22% Similarity=0.173 Sum_probs=92.0
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhh----chhhHHhhHHHHHHH
Q 008806 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVE 404 (553)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~----~~~~~~~~ll~~l~~ 404 (553)
.|-.+.+|..++..++..+..++..+.....+..+-=.|.|.+.+||..++++|..+...- +-+.+.+.+...+.+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 6788999999999999999988888777777777777789999999999999999988761 112334566666777
Q ss_pred hh-cCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 008806 405 LA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (553)
Q Consensus 405 ~~-~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~ 461 (553)
++ .|-+..||...+..+-.... .......=+..+..++-|..+.|+.+|...+.
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSS---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhc---ccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 77 45566777666554443321 11112222335667888988999888887764
No 193
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.65 E-value=0.3 Score=41.65 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=78.1
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH---HHHhHHHHHHHhccCCcHHHHHHHHHHHHhh---hhhhC
Q 008806 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVIMGM---APLLG 351 (553)
Q Consensus 278 ~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l---~~~~~ 351 (553)
.+.++|.+.+.+.+.+...|-.|.+.+..+.+.-+.+. +.+.+++.+...++..+..|...++.++..+ .+..|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 35789999999998888888888888888887734443 3455666677788899999999999999999 66666
Q ss_pred HHh--HHHhHHHHHHHhhCC-----------CChHHHHHHHHHHHHhhhhhchhh
Q 008806 352 KDA--TIEQLLPIFLSLLKD-----------EFPDVRLNIISKLDQVNQVIGIDL 393 (553)
Q Consensus 352 ~~~--~~~~l~p~l~~~l~d-----------~~~~VR~~a~~~l~~~~~~~~~~~ 393 (553)
+.. ...+++|.+.-+.+. ....+++....+|..+-..-|++.
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA 170 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDA 170 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhH
Confidence 543 245555555422211 224455555555555555555443
No 194
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.62 E-value=0.25 Score=47.71 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCC-------ChhHHHHHHHHHHHhhcc--
Q 008806 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-------QDSVRLLAVEGCAALGKL-- 232 (553)
Q Consensus 162 ~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~-------~~~vr~~a~~~l~~l~~~-- 232 (553)
+..+..+.+.+.+.+...|..++..|. .+.-...++|.|..++.+. +...-...+....++...
T Consensus 177 q~yf~~It~a~~~~~~~~r~~aL~sL~-------tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 177 QLYFEEITEALVGSNEEKRREALQSLR-------TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhc-------cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 344555666666677777777666544 2445678888888776543 333333344444554433
Q ss_pred CCcchhhhchHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCc--HHHHH
Q 008806 233 LEPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRI 298 (553)
Q Consensus 233 ~~~~~~~~~ll~~l~~l~----------~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~llp~l~~ll~d~~--~~vr~ 298 (553)
+.-+.+...++|.+..++ .+..|..|..++..++.++..++... ....+...+.+.+.|+. ....-
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~Y 329 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHY 329 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhh
Confidence 333456667888776643 35679999999999999999988764 22345555555555554 23366
Q ss_pred HHHHHHHHHH
Q 008806 299 AAAGKVTKFC 308 (553)
Q Consensus 299 ~a~~~l~~~~ 308 (553)
.|+..|..++
T Consensus 330 GAi~GL~~lG 339 (343)
T cd08050 330 GAIVGLSALG 339 (343)
T ss_pred HHHHHHHHhC
Confidence 6777666554
No 195
>PF05536 Neurochondrin: Neurochondrin
Probab=95.48 E-value=3.7 Score=42.47 Aligned_cols=177 Identities=19% Similarity=0.227 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHhh---CHHHHHHhHHHHHHHhccCCcH-HHHHHHHHHHHhhhhh-hCHHhH-HHhHHHHHHHhhC
Q 008806 295 EVRIAAAGKVTKFCRIL---NPELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPL-LGKDAT-IEQLLPIFLSLLK 368 (553)
Q Consensus 295 ~vr~~a~~~l~~~~~~~---~~~~~~~~l~~~l~~l~~d~~~-~vr~~~~~~l~~l~~~-~~~~~~-~~~l~p~l~~~l~ 368 (553)
..+.-|+.-|..++..- .... .-.-+|.+...+...+. .+-..+..++..++.. -|.... ....+|.+.+.+.
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~-~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQ-MVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHH
Confidence 34455555555555410 0112 23345666666655444 5556666666666532 122211 2233445555544
Q ss_pred CCChHHHHHHHHHHHHhhhhhchhhH------HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh--------hhhH
Q 008806 369 DEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--------GFFD 434 (553)
Q Consensus 369 d~~~~VR~~a~~~l~~~~~~~~~~~~------~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~--------~~~~ 434 (553)
+ .+...+.++..+..++...+.+.. ...+++.+...........+..++..++.+....+. ..+.
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 4 455667777777777666553221 134555555555555666677777777777665521 1244
Q ss_pred HHHHHHHHHHccC-CchHHHHHHHHHHHHHHHHhChhHHh
Q 008806 435 DKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAM 473 (553)
Q Consensus 435 ~~l~~~l~~~l~D-~~~~VR~~a~~~l~~l~~~~~~~~~~ 473 (553)
..+...+...++. ..+.-|..+....+.+.+.+|.+|..
T Consensus 230 ~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~ 269 (543)
T PF05536_consen 230 SDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLF 269 (543)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhc
Confidence 5566666666655 45678999999999999999988753
No 196
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=2.8 Score=45.74 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=76.2
Q ss_pred hhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhh---hC-hhhhHHHHHHHH
Q 008806 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ---LG-VGFFDDKLGALC 441 (553)
Q Consensus 366 ~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~---~~-~~~~~~~l~~~l 441 (553)
-..|-.+.+|..++..|+..+..+..-.+....+..+-..+.|.+-.||..++.++..+... .+ -+.|..++-.-+
T Consensus 295 RYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RI 374 (1048)
T KOG2011|consen 295 RYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRI 374 (1048)
T ss_pred ecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 34788999999999999999999988888888888898999999999999999999988876 11 133445554444
Q ss_pred HHHc-cCCchHHHHHHHHHHHHH
Q 008806 442 MQWL-QDKVYSIRDAAANNLKRL 463 (553)
Q Consensus 442 ~~~l-~D~~~~VR~~a~~~l~~l 463 (553)
+.+. .|-+..||...+..+-..
T Consensus 375 VeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 375 VEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred HHHHhhhcchhHHHHHHHHHHHH
Confidence 4444 667778887777665544
No 197
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.97 Score=50.78 Aligned_cols=225 Identities=14% Similarity=0.106 Sum_probs=129.7
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhh----hhh-cCCCcHHHHHHHHHHhhccccccCC--cc
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPF----LSE-NNDDDDEVLLAMAEELGVFIPYVGG--VE 82 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~----l~~-~~d~~~~vr~~~~~~l~~l~~~~~~--~~ 82 (553)
.+..++.+|...|+..|..|...+..+....+.+... .++|. +.+ ..|.+..||...-..+..+...++. .+
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~-~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELK-GILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHh-hhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3677889999999999999999998886555443322 23333 333 6788999999998888887765554 35
Q ss_pred hhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhh----hhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCCh
Q 008806 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD----LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (553)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 158 (553)
+...+.|.+.-...|.+..|-.+|...+......-.... ....+.+++.+.. .+.++
T Consensus 121 ~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~-------------------~~~~~ 181 (1312)
T KOG0803|consen 121 FLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEIL-------------------VKETP 181 (1312)
T ss_pred HHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHH-------------------hccCc
Confidence 666677776666667777777777766655543111111 1122333333221 01111
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhh-------h--HHHHHHHhhhCCChhHHHHHHHHHHHh
Q 008806 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT-------D--IMSIFEDLTQDDQDSVRLLAVEGCAAL 229 (553)
Q Consensus 159 ~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-------~--l~p~l~~~~~d~~~~vr~~a~~~l~~l 229 (553)
+..++..-.-.+-++....+|-..+..++..+....+++.-.. . --..+++++++..+.+|.+..+.+..+
T Consensus 182 ~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l 261 (1312)
T KOG0803|consen 182 DSLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSL 261 (1312)
T ss_pred cccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 1111111111122333445566666666666665555422111 1 123467788899999999998888877
Q ss_pred hccCCcc---hhhhchHHHHHHhcCCCC
Q 008806 230 GKLLEPQ---DCVAHILPVIVNFSQDKS 254 (553)
Q Consensus 230 ~~~~~~~---~~~~~ll~~l~~l~~d~~ 254 (553)
.+.+..- .....+.|.+.....+.+
T Consensus 262 ~~~i~~~~~~~~~~~l~~~~~~~~~~~d 289 (1312)
T KOG0803|consen 262 IDDILNRVMESEKNYLKPVLLGSIDSLD 289 (1312)
T ss_pred HhhhHHhcchhhhhHhhHHHHccccccc
Confidence 7654321 223445565555555544
No 198
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=95.19 E-value=4.2 Score=41.37 Aligned_cols=160 Identities=11% Similarity=0.142 Sum_probs=96.2
Q ss_pred hcChhhhhhhHHHHHHHHhcCCCcchh--hhHhhhhHhhcCCCChHH-HHHHHHHHH---Hhc-----CCCCHHHHHHHH
Q 008806 116 QMRESDLVDWYIPLVKRLAAGEWFTAR--VSACGLFHIAYPSAPDIL-KTELRSIYT---QLC-----QDDMPMVRRSAA 184 (553)
Q Consensus 116 ~~~~~~~~~~~l~~l~~~~~~~~~~~r--~~~~~~l~~l~~~~~~~~-~~~l~~~l~---~ll-----~d~~~~Vr~~a~ 184 (553)
++...+.+.+++.-+-....++.|.-. ...|=++|.+...+++.. +.-++..+. .+| +|.-..|.....
T Consensus 472 hL~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIM 551 (1053)
T COG5101 472 HLIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIM 551 (1053)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhheccee
Confidence 444455666777777777777665433 344556777777777662 222233333 333 233333433333
Q ss_pred HHHHHHHhhhCc-hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc----------chhhhchHHHHHHhcCCC
Q 008806 185 SNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----------QDCVAHILPVIVNFSQDK 253 (553)
Q Consensus 185 ~~l~~l~~~~~~-~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~ll~~l~~l~~d~ 253 (553)
...|+.-..+.. -.+...++..+.+...+..+.|+..|++++-.+++.++. +.+...++.-+.+...|-
T Consensus 552 yvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL 631 (1053)
T COG5101 552 YVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDL 631 (1053)
T ss_pred eeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccC
Confidence 333332222211 123344555566667778889999999999999987654 234444555556667788
Q ss_pred CHHHHHHHHHHHHHHHHHhCCC
Q 008806 254 SWRVRYMVANQLYELCEAVGPE 275 (553)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~~~ 275 (553)
.+.-...+.+++|.+....+..
T Consensus 632 ~pqQ~htfYeAcg~vIse~p~~ 653 (1053)
T COG5101 632 EPQQKHTFYEACGMVISEVPKT 653 (1053)
T ss_pred ChHHHhHHHHHHhHHHhccchh
Confidence 8888888899999888766543
No 199
>PF05536 Neurochondrin: Neurochondrin
Probab=95.18 E-value=4.6 Score=41.80 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=90.9
Q ss_pred hHHHHHHHhhhCCCh-hHHHHHHHHHHHhhcc-CCcch-hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 008806 202 DIMSIFEDLTQDDQD-SVRLLAVEGCAALGKL-LEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~-~vr~~a~~~l~~l~~~-~~~~~-~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 278 (553)
.-+|.+.+.+...+. ++...|.++|..++.. -|.+. .....+|.+.+...+ .+.....+...+..++...+.+...
T Consensus 98 ~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~ 176 (543)
T PF05536_consen 98 SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWA 176 (543)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhh
Confidence 456777777766655 7777788888777733 12222 122345555555554 4456677777777777665533221
Q ss_pred ------cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--------HHHHHHhHHHHHHHhccC-CcHHHHHHHHHHH
Q 008806 279 ------MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSD-SSQHVRSALASVI 343 (553)
Q Consensus 279 ------~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~--------~~~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l 343 (553)
..+++.+.+.+.......+-..+.-|+.+....+ ...+...+...+..++++ ....-|..+..+.
T Consensus 177 ~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~La 256 (543)
T PF05536_consen 177 EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLA 256 (543)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1344555555544444455556666666555432 123456677777777655 4577888888888
Q ss_pred HhhhhhhCHHh
Q 008806 344 MGMAPLLGKDA 354 (553)
Q Consensus 344 ~~l~~~~~~~~ 354 (553)
..+...+|.+.
T Consensus 257 a~Ll~~~G~~w 267 (543)
T PF05536_consen 257 ASLLDLLGPEW 267 (543)
T ss_pred HHHHHHhChHh
Confidence 88888877653
No 200
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.06 E-value=3.4 Score=39.61 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=75.6
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhhhhhc---hhhH---HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhh---
Q 008806 363 FLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--- 433 (553)
Q Consensus 363 l~~~l~d~~~~VR~~a~~~l~~~~~~~~---~~~~---~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--- 433 (553)
+.+..+.++.+|-..|..++..+..... .+.+ .+.+......++.++|+-+|..++..+|.+...-..-.+
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~ 248 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR 248 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH
Confidence 5566778889999999999888765422 2222 155666788899999999999999999998843222111
Q ss_pred ---HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 434 ---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 434 ---~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
.+.-+-.++.+++|++.++|..|.+.+..++.+-
T Consensus 249 yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 249 YISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 1345668889999999999999999999988764
No 201
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=5.5 Score=41.41 Aligned_cols=145 Identities=10% Similarity=0.032 Sum_probs=94.7
Q ss_pred CCccccchHHHHHHhcC-----CC---cHHHHHHHHHHHHHHHHhhCHH-----HHHHhHHHHHHHhccCCcHHHHHHHH
Q 008806 274 PEPTRMDLVPAYVRLLR-----DN---EAEVRIAAAGKVTKFCRILNPE-----LAIQHILPCVKELSSDSSQHVRSALA 340 (553)
Q Consensus 274 ~~~~~~~llp~l~~ll~-----d~---~~~vr~~a~~~l~~~~~~~~~~-----~~~~~l~~~l~~l~~d~~~~vr~~~~ 340 (553)
.+.+.+.+++.+...+. ++ ++.-...|+..++.+...+... .+...+++.+....+++.--.|..+|
T Consensus 402 ke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srac 481 (970)
T COG5656 402 KEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRAC 481 (970)
T ss_pred chhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHH
Confidence 33444667888887772 22 2334456777777766644321 33445777778888899888999999
Q ss_pred HHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh-hHH---hhHHHHHHHhhcCCCcHHHHH
Q 008806 341 SVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLS---QSLLPAIVELAEDRHWRVRLA 416 (553)
Q Consensus 341 ~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-~~~---~~ll~~l~~~~~d~~~~vR~~ 416 (553)
..+..+..-+........+.....+++++.+-.|+..|+-++..+....... .+. ...+..+..+.++-+.+.-..
T Consensus 482 e~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 482 EFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 9999997767666555666777788888988899999999999887654322 222 334444555555555444433
Q ss_pred HH
Q 008806 417 II 418 (553)
Q Consensus 417 ~~ 418 (553)
++
T Consensus 562 vM 563 (970)
T COG5656 562 VM 563 (970)
T ss_pred HH
Confidence 33
No 202
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.92 E-value=3.9 Score=39.60 Aligned_cols=408 Identities=12% Similarity=0.058 Sum_probs=193.3
Q ss_pred CcHHHHHHHHHHhhccccc-cCCcchh-----hcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhh-------hhhh
Q 008806 59 DDDEVLLAMAEELGVFIPY-VGGVEHA-----HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-------LVDW 125 (553)
Q Consensus 59 ~~~~vr~~~~~~l~~l~~~-~~~~~~~-----~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~ 125 (553)
.+..|+...+.|+....+. +....+. ...+..+.+.-++++.+|-.+.+.+|++++....... ..+.
T Consensus 54 ~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 54 ASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred ccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 3445677777777665431 0011111 2344455565566688999999999999986543211 1123
Q ss_pred HHHHHHHHhcCCCcchhhhHhhhhHhhcCCC--ChHHHHH-----HHHHHHHhcC-CC-CHHHHHHHHHHHHHHHhhhC-
Q 008806 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSA--PDILKTE-----LRSIYTQLCQ-DD-MPMVRRSAASNLGKFAATVE- 195 (553)
Q Consensus 126 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~--~~~~~~~-----l~~~l~~ll~-d~-~~~Vr~~a~~~l~~l~~~~~- 195 (553)
++..+...+..+++.--....-.+|.+..+. +.++..+ +++.+..... |. +...-+...-.++.+.....
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 5666666665554433222222233332222 2222222 2333333221 11 11222222222222222111
Q ss_pred ---chhhhhhHHHHHHHhh-hCCChhHHHHHHHHHHHhhccCC------cchhhhchHHHHHHhcCCCCHHHHHHHHHHH
Q 008806 196 ---PAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265 (553)
Q Consensus 196 ---~~~~~~~l~p~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l 265 (553)
+......+.-.+.+++ +...+..+..+.+.+...++.-- .......++..+.+.-.+.+..--....+..
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~ 293 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRI 293 (604)
T ss_pred hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhh
Confidence 1000011111122222 23345566667777766665311 1112223344444332222221112222222
Q ss_pred HHHHH--HhCCCc-----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh------CHHHHHHhHHHHHHH-hccCC
Q 008806 266 YELCE--AVGPEP-----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL------NPELAIQHILPCVKE-LSSDS 331 (553)
Q Consensus 266 ~~l~~--~~~~~~-----~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~------~~~~~~~~l~~~l~~-l~~d~ 331 (553)
..+.. ..|++. ..++++..+..++.+.+.+....+.-+++.+.+.- -.+.+.+.++..+.+ --.|.
T Consensus 294 ~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdg 373 (604)
T KOG4500|consen 294 AELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDG 373 (604)
T ss_pred hhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 22221 124432 23458889999999999888888888899887632 223455666666544 34567
Q ss_pred cHHHHHHHHHHHHhhhh-hhCHHhH-HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch---hhH-HhhHHHHHHHh
Q 008806 332 SQHVRSALASVIMGMAP-LLGKDAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLL-SQSLLPAIVEL 405 (553)
Q Consensus 332 ~~~vr~~~~~~l~~l~~-~~~~~~~-~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~-~~~ll~~l~~~ 405 (553)
+-++..+++.++..+.- ...+..+ ..-+...+...++-..|.|....+.++.-+...... +.. ...+...|..-
T Consensus 374 nV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W 453 (604)
T KOG4500|consen 374 NVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDW 453 (604)
T ss_pred cchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHh
Confidence 78888899999888753 2222222 122333455555656666666555555544332110 000 13455566666
Q ss_pred hcCCCcH-HHHHHHHHHHHHHhhhChhh-----hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 406 AEDRHWR-VRLAIIEYIPLLASQLGVGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 406 ~~d~~~~-vR~~~~~~l~~i~~~~~~~~-----~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
.+++++. +-...-..+..+.++..... .....+....+.++.........|+-++..+...
T Consensus 454 sks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 454 SKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred hhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 6666554 44444444444443311100 0111344455556666666667777666665543
No 203
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=94.91 E-value=4 Score=39.63 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhc
Q 008806 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (553)
Q Consensus 174 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (553)
+.+......++.+|+.....+ ...+.+.++..+.+.++|....+|...+..++....
T Consensus 34 E~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 34 ESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 345555666666666665555 233445566666666666666666666666665543
No 204
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=94.87 E-value=4.1 Score=39.56 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCC--CcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHcc
Q 008806 398 LLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 446 (553)
Q Consensus 398 ll~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~ 446 (553)
+-..+..++-++ .|.+|..+...+..+....+.. +...++..+...+.
T Consensus 205 ~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 205 WAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 444455555565 7888888888888776554433 44445555555544
No 205
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.79 E-value=1.6 Score=43.50 Aligned_cols=140 Identities=13% Similarity=0.207 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCC-hh-------HHHHHHHHHHHhhcc--
Q 008806 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ-DS-------VRLLAVEGCAALGKL-- 232 (553)
Q Consensus 163 ~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~-~~-------vr~~a~~~l~~l~~~-- 232 (553)
-.+..+.+.|.+.++..|+.|+..|.. +.-...++|.|..++.+.- .+ .-...+.....+.+.
T Consensus 207 lYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 207 LYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 345666666777888899988887663 4446788899888776541 12 112222233333322
Q ss_pred CCcchhhhchHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCc--HHHHH
Q 008806 233 LEPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRI 298 (553)
Q Consensus 233 ~~~~~~~~~ll~~l~~l~----------~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~llp~l~~ll~d~~--~~vr~ 298 (553)
+--+.+...++|.+..++ .|..|.+|.-++..+..++..++..+ ....+...+.+.+.|+. .....
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 222456677888876643 36789999999999999999988654 23457777777777763 56677
Q ss_pred HHHHHHHHHHH
Q 008806 299 AAAGKVTKFCR 309 (553)
Q Consensus 299 ~a~~~l~~~~~ 309 (553)
.++..|..++.
T Consensus 360 Gai~gL~~lg~ 370 (576)
T KOG2549|consen 360 GAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHhhh
Confidence 77777776554
No 206
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.74 E-value=0.19 Score=42.36 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=86.2
Q ss_pred HHHhhhc-cchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-----HHHH
Q 008806 90 PLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTE 163 (553)
Q Consensus 90 ~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-----~~~~ 163 (553)
++..+.. ...+++|..+.-++.++.+. .++.+...+-+++.....+........++..+..+.+...+- ..+.
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~-~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg 86 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDA-AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEG 86 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTT
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhh
Confidence 3444443 45677899988888888632 234556667778887777766667777778888887765432 2345
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHHHhhhC-chhhhhhHHHHHHHhhh-CCChh-HHHHHHHHH
Q 008806 164 LRSIYTQLCQ--DDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQ-DDQDS-VRLLAVEGC 226 (553)
Q Consensus 164 l~~~l~~ll~--d~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~l~p~l~~~~~-d~~~~-vr~~a~~~l 226 (553)
+.+.+..++. .++..+...+++.+..-+..-. ...+.+...+++.+..+ ++++. +|..|.-.|
T Consensus 87 ~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 87 FLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 6666666666 6777888888887775543211 13455667788887774 44454 666665444
No 207
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=6.3 Score=41.06 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=94.8
Q ss_pred CHHhHHHhHHHHHHHhhC-----C---CChHHHHHHHHHHHHhhhhhchh-----hHHhhHHHHHHHhhcCCCcHHHHHH
Q 008806 351 GKDATIEQLLPIFLSLLK-----D---EFPDVRLNIISKLDQVNQVIGID-----LLSQSLLPAIVELAEDRHWRVRLAI 417 (553)
Q Consensus 351 ~~~~~~~~l~p~l~~~l~-----d---~~~~VR~~a~~~l~~~~~~~~~~-----~~~~~ll~~l~~~~~d~~~~vR~~~ 417 (553)
.++.+.+.+++.+...++ + +++.-.++|++.+..+...+... .+..-+.+.+.-...++.--.|..+
T Consensus 401 rke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Sra 480 (970)
T COG5656 401 RKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRA 480 (970)
T ss_pred cchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHH
Confidence 334445667777777772 1 23445677888888887744322 2334455566666677777788999
Q ss_pred HHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh-HHhhhhhhhhhhhhhhh
Q 008806 418 IEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQKSHVLDCC 487 (553)
Q Consensus 418 ~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~-~~~~~i~p~l~~~l~~~ 487 (553)
|+.++.+..-+..............+++.+++..|+..|+-++.-++.+.... ...++|.+.+.+++.-+
T Consensus 481 ce~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLS 551 (970)
T COG5656 481 CEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLS 551 (970)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhc
Confidence 99999997666666666778888889999999999999999999888665322 23456666777766543
No 208
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.72 E-value=5.3 Score=40.14 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhh---chHHHHHHhcCC
Q 008806 176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA---HILPVIVNFSQD 252 (553)
Q Consensus 176 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~---~ll~~l~~l~~d 252 (553)
-...|..++++||.++..++.+......-+.+...++.....-|..+.-.+...+.......... .+.+.+...+++
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 35679999999999999997655555555678888999988889999988888888766654433 566667776666
Q ss_pred CC
Q 008806 253 KS 254 (553)
Q Consensus 253 ~~ 254 (553)
+.
T Consensus 180 ~~ 181 (441)
T PF12054_consen 180 PE 181 (441)
T ss_pred CC
Confidence 54
No 209
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=3.9 Score=38.66 Aligned_cols=177 Identities=12% Similarity=0.056 Sum_probs=106.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhCHHH-H-HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh---HHHhHHHHHHHh
Q 008806 292 NEAEVRIAAAGKVTKFCRILNPEL-A-IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSL 366 (553)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~~~~~-~-~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~ 366 (553)
.+.+-+..|+..|..+++.++... + ....++.+...+++.+..+|..+++.++..+..-++.. .....++.+...
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 345667788888888777765432 1 11122333347788888888888888888776433211 122234444444
Q ss_pred h-CCCChHHHHHHHHHHHHhhhhhchhh--H-HhhHHHHHHHhhcC--CCcHHHHHHHHHHHHHHhhhCh--hhhHHHHH
Q 008806 367 L-KDEFPDVRLNIISKLDQVNQVIGIDL--L-SQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV--GFFDDKLG 438 (553)
Q Consensus 367 l-~d~~~~VR~~a~~~l~~~~~~~~~~~--~-~~~ll~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~~--~~~~~~l~ 438 (553)
+ .|++..+|..|+.++..++....+-. + .-.=...|...+++ .+.+.+.-++..++.+...-.. +......+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 4 56677899999999998887653321 1 10112345555666 5667778888888888765322 22222233
Q ss_pred H-HHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 439 A-LCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 439 ~-~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
+ .+..+...-..++++.++.++-.....+.
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 3 33344555667899999888877776543
No 210
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.71 E-value=2 Score=38.38 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=92.8
Q ss_pred hhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCC-CCHHHHHHH-HHHHHHHHHHhCCCccc
Q 008806 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTR 278 (553)
Q Consensus 201 ~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d-~~~~vR~~~-~~~l~~l~~~~~~~~~~ 278 (553)
+........+..++..+.|..|+..+.......+. ..++.+...+.+ .+|.+-..+ ...++.+... .
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~------~ 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE-----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK------H 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH------H
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh------h
Confidence 34445566677888888899888888765433222 245566665555 467777766 4445666543 1
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh
Q 008806 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 279 ~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
+.+.+.+.+++++++.-+|.+++..+...... ...+.++..+...+.|++..||.++..+|..++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 56889999999999988888887766544333 22466777777888999999999999999999865
No 211
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=7.8 Score=41.64 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=68.4
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh--h---hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh-
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--F---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP- 469 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--~---~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~- 469 (553)
..++-.-..++.+++-.+|..++.++......+... . .....+|.++..+.++++-+-+.|++++..+++..|.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 345555566788999999999999987655444321 1 2245678888889999999999999999999998873
Q ss_pred --hHHhhhhhhhhhhhhhhh
Q 008806 470 --EWAMQHITPQKSHVLDCC 487 (553)
Q Consensus 470 --~~~~~~i~p~l~~~l~~~ 487 (553)
....+.++|++.....+.
T Consensus 882 v~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 122478999998877653
No 212
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.95 Score=43.31 Aligned_cols=125 Identities=19% Similarity=0.131 Sum_probs=91.6
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh---hHHHH
Q 008806 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKL 437 (553)
Q Consensus 363 l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~---~~~~l 437 (553)
+...++-.+..||..|+..+........... ....+++.+..+..|.+..+|......+..++...+++. +..-+
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~ 142 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL 142 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence 3344567788899999999988877632211 124566777778889999999999999988776655543 34456
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhh--hhhhhhhhhhhhh
Q 008806 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ--HITPQKSHVLDCC 487 (553)
Q Consensus 438 ~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~--~i~p~l~~~l~~~ 487 (553)
++++...++.-.++||.-+...+..+...+++.+... .+++...++.+..
T Consensus 143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~ 194 (393)
T KOG2149|consen 143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKL 194 (393)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence 7888888899999999999999999999999887653 3555555555433
No 213
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.34 E-value=6 Score=39.20 Aligned_cols=287 Identities=13% Similarity=0.059 Sum_probs=133.4
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCC-ChhHHHHHHHHHHHhhccCCcc--hhhhc
Q 008806 168 YTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ--DCVAH 241 (553)
Q Consensus 168 l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 241 (553)
+..++..+++.+...++..+..++..-.. ......+.+.+...+... +......++.++..+...-... .+...
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 33456667888888888888887653221 122233455555555433 3455566667777766532111 11122
Q ss_pred hHHHHHHhcCCC--CHHHHHHHHHHHHHHHHH--hCCCccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhC---H
Q 008806 242 ILPVIVNFSQDK--SWRVRYMVANQLYELCEA--VGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILN---P 313 (553)
Q Consensus 242 ll~~l~~l~~d~--~~~vR~~~~~~l~~l~~~--~~~~~~~~~llp~l~~ll~d~~-~~vr~~a~~~l~~~~~~~~---~ 313 (553)
.++.+..++... +.+..+.++-++-.+.-. .........++|.+.+.+++.. .-|-+.++..+..+...-. +
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~ 265 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREV 265 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccch
Confidence 334444433321 334555554444333211 0011112458888888887654 2233345555555554221 0
Q ss_pred H-HH----HH-hHHHHHHHhccCC---cHHHHHHHHHHHHhhhhhhCHHh-HHHhHHHHHHHhhCC-----CChHHHHHH
Q 008806 314 E-LA----IQ-HILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDA-TIEQLLPIFLSLLKD-----EFPDVRLNI 378 (553)
Q Consensus 314 ~-~~----~~-~l~~~l~~l~~d~---~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~p~l~~~l~d-----~~~~VR~~a 378 (553)
. .+ .. .+.+.+. .++.. +..+....-..-..+.+....-. +.++.-.+....|.- ++.-=|+.+
T Consensus 266 ~~~~~~~mv~~~l~~~l~-~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~ 344 (429)
T cd00256 266 KKTAALQMVQCKVLKTLQ-SLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENA 344 (429)
T ss_pred hhhHHHHHHHcChHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHH
Confidence 1 11 11 2222222 22222 22332222222112211111100 112222222222211 011123333
Q ss_pred HHHHHHhhhhhchhhHHhhHHHHHHHhhc-CCCcHHHHHHHHHHHHHHhhhChh-hhHHH--HHHHHHHHccCCchHHHH
Q 008806 379 ISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDK--LGALCMQWLQDKVYSIRD 454 (553)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~--l~~~l~~~l~D~~~~VR~ 454 (553)
-+ +-+ +. -.++..|.+++. +.+..+-..||.=+|.+++..+.. ..... .-..++.++++++++||.
T Consensus 345 ~k----f~~----~~--~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~ 414 (429)
T cd00256 345 DR----LNE----KN--YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRY 414 (429)
T ss_pred HH----HHh----cc--hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHH
Confidence 22 111 11 234455556553 345566677777788888775322 12222 345678899999999999
Q ss_pred HHHHHHHHHHH
Q 008806 455 AAANNLKRLAE 465 (553)
Q Consensus 455 ~a~~~l~~l~~ 465 (553)
.|+.|+..++-
T Consensus 415 eAL~avQklm~ 425 (429)
T cd00256 415 EALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 214
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=9.5 Score=40.61 Aligned_cols=173 Identities=12% Similarity=0.080 Sum_probs=115.8
Q ss_pred chhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhh---
Q 008806 140 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDM-----PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT--- 211 (553)
Q Consensus 140 ~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~-----~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~--- 211 (553)
.-|....+.+...+..+++...+-+...+.+++.|.+ +..-++++..+-.++.+++.... .-+|.+.+..
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asi 516 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASI 516 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhcccc
Confidence 3466666777777777776677777788888877766 78888888999999998885332 2344444332
Q ss_pred --hCCChhHHHHHHHHHHHhhccCCcch-hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHH
Q 008806 212 --QDDQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYV 286 (553)
Q Consensus 212 --~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~llp~l~ 286 (553)
+-.++..-..+...++..+.+++... +.+.-+|.+.+.+.... .-..+...+.++|+.+..+.. .+.++..+.
T Consensus 517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~ 594 (982)
T KOG2022|consen 517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCY 594 (982)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence 22356666778889999998877653 44556777777665332 334455568889888765432 234555555
Q ss_pred HhcCCC--cHHHHHHHHHHHHHHHHhhCHHHH
Q 008806 287 RLLRDN--EAEVRIAAAGKVTKFCRILNPELA 316 (553)
Q Consensus 287 ~ll~d~--~~~vr~~a~~~l~~~~~~~~~~~~ 316 (553)
..+... .+..|...+.++|.+.....++..
T Consensus 595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~ 626 (982)
T KOG2022|consen 595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEI 626 (982)
T ss_pred HHhcccccCchHHHHHHHHHHHHHHhccHHhH
Confidence 555433 257889999999999888776643
No 215
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=13 Score=41.69 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=68.6
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhhhhhchh----h----HHhhHHHHHHHhhc--CCCcHH-------HHHHHHHHHH
Q 008806 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----L----LSQSLLPAIVELAE--DRHWRV-------RLAIIEYIPL 423 (553)
Q Consensus 361 p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~----~----~~~~ll~~l~~~~~--d~~~~v-------R~~~~~~l~~ 423 (553)
..+.++..|+-++||..|++++=++....|.. . +...++|.|...-. -+.|.- -++.+..++.
T Consensus 1000 ~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisg 1079 (1610)
T KOG1848|consen 1000 VHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISG 1079 (1610)
T ss_pred HHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHH
Confidence 33445557888999999999998887765532 1 23556665542110 012221 1356677777
Q ss_pred HHhhhChhh-----------hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 424 LASQLGVGF-----------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 424 i~~~~~~~~-----------~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
|++.+...+ .-+.++..+..+..|.++++..+|+.++..+...
T Consensus 1080 Iaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1080 IAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 777654431 1245667777888999999999999999887643
No 216
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.92 E-value=2.3 Score=39.92 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=20.7
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 008806 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (553)
Q Consensus 280 ~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~ 312 (553)
.++|.++.++.|.++.+|..++..+..+.+..+
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~ 151 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP 151 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 356666666666666666666666666665443
No 217
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.90 E-value=0.68 Score=44.25 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=82.0
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhh---hhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCc---c
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRK---ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV---E 82 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~---~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~---~ 82 (553)
-+.+++..+++.+..+|..|...+.++... .|..... .+++.+.. ..|++..||....+.+..++.....+ .
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 377889999999999999999999988776 4544433 44444444 77888999999888887765544432 3
Q ss_pred hhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhh
Q 008806 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD 121 (553)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~ 121 (553)
+...+.+.+...+.+-.+++|..+...+.-++..+++..
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 445566666666777888899999988888888887643
No 218
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=93.63 E-value=1.3 Score=39.52 Aligned_cols=133 Identities=15% Similarity=0.123 Sum_probs=83.5
Q ss_pred hHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCC-CCHHHHHHH-HHHHHHHHhhhCchhhhhh
Q 008806 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSA-ASNLGKFAATVEPAHLKTD 202 (553)
Q Consensus 125 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d-~~~~Vr~~a-~~~l~~l~~~~~~~~~~~~ 202 (553)
....++..+..++..+.|..++.+++......+.. .++.+...+.+ ++|.+.... ...++.+.... +.
T Consensus 51 ~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~~----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~ 120 (213)
T PF08713_consen 51 ELYELADELWESGYREERYLALLILDKRRKKLTEE----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PE 120 (213)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--HH----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GG
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhHH----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HH
Confidence 34455666667777777888777776655433322 44555555544 456665555 34455554322 35
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 008806 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (553)
Q Consensus 203 l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 271 (553)
..+.+.+-.++++..+|.+++..+...... ...+.++..+.....|++..||.++...|..++..
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 667777778888888888887665443332 33356777777888899999999998888887643
No 219
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=93.44 E-value=8.9 Score=38.06 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=47.7
Q ss_pred HHHHHHHhhC-CCChHHHHHHHHHHHHhhhhh--chhhHH-hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHh
Q 008806 359 LLPIFLSLLK-DEFPDVRLNIISKLDQVNQVI--GIDLLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (553)
Q Consensus 359 l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~~~--~~~~~~-~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~ 426 (553)
++..+.+++. ..++.+-.-|+.-+|.+++.+ |...+. -.....+.++++++|..||..|+.+++.+..
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4556666663 445667777888888888875 444332 2355667788889999999999999988753
No 220
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.41 E-value=3.5 Score=39.42 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=72.4
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCC----CcHHHHHHHHHHHHHHHHhhC--H
Q 008806 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRD----NEAEVRIAAAGKVTKFCRILN--P 313 (553)
Q Consensus 242 ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~llp~l~~ll~d----~~~~vr~~a~~~l~~~~~~~~--~ 313 (553)
.-|++. +++.+++.+...++..+..++..-+..... ..+++.+.+++.+ ++.+++..|++++..+...-. .
T Consensus 107 ~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 107 YSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 344444 666667778888877777777654433321 2456666666554 345566778888887765211 0
Q ss_pred HHHHHhHHHHHHHhc-------cCCcHHHHHHHHHHHHhhhh--hhCHHhHHHhHHHHHHHhhCCCCh-HHHHHHHHHHH
Q 008806 314 ELAIQHILPCVKELS-------SDSSQHVRSALASVIMGMAP--LLGKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLD 383 (553)
Q Consensus 314 ~~~~~~l~~~l~~l~-------~d~~~~vr~~~~~~l~~l~~--~~~~~~~~~~l~p~l~~~l~d~~~-~VR~~a~~~l~ 383 (553)
.-+....++.+...+ ...+......++.++..+.- ..-.......++|.+.+.+++... .|-+-++.++.
T Consensus 186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~ 265 (312)
T PF03224_consen 186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILR 265 (312)
T ss_dssp HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111133344444444 12345666777776666541 111111223467777777765432 34444555566
Q ss_pred Hhhhh
Q 008806 384 QVNQV 388 (553)
Q Consensus 384 ~~~~~ 388 (553)
.++..
T Consensus 266 Nl~~~ 270 (312)
T PF03224_consen 266 NLLSK 270 (312)
T ss_dssp HTTSS
T ss_pred HHHhc
Confidence 65543
No 221
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=93.39 E-value=9.6 Score=38.31 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=51.3
Q ss_pred CcchhhhHhhhhHhhcCCCChHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHhhhCch
Q 008806 138 WFTARVSACGLFHIAYPSAPDILKTELRS-IYTQLCQDDMPMVRRSAASNLGKFAATVEPA 197 (553)
Q Consensus 138 ~~~~r~~~~~~l~~l~~~~~~~~~~~l~~-~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~ 197 (553)
-...|..++.++|.+..++..+....++. .+..++++++..-|..++-.+..++......
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~ 160 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKER 160 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccc
Confidence 36889999999999999998877777776 6999999999999999988899888876653
No 222
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=14 Score=39.97 Aligned_cols=93 Identities=23% Similarity=0.209 Sum_probs=68.8
Q ss_pred HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh--H---HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch
Q 008806 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--T---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (553)
Q Consensus 317 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~---~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~ 391 (553)
...++..-..++++++-++|..++.++....+.+.... . ....+|.+...+.++++-+-..|+.++..++...|.
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 34455555678899999999999998887766654321 1 345678888899999999999999999999887764
Q ss_pred h---hHHhhHHHHHHHhhcCC
Q 008806 392 D---LLSQSLLPAIVELAEDR 409 (553)
Q Consensus 392 ~---~~~~~ll~~l~~~~~d~ 409 (553)
= .+.+.++|.+..++.|.
T Consensus 881 Fv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 881 FVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2 23477888888766553
No 223
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.27 E-value=8.3 Score=38.63 Aligned_cols=192 Identities=14% Similarity=0.164 Sum_probs=98.1
Q ss_pred hchHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCc------cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 008806 240 AHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (553)
Q Consensus 240 ~~ll~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~~~~------~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~ 312 (553)
+++...+...++++ +|.--....++++.+.+...... +.+.++|.+...+..+..+----+.+-++.+.+...
T Consensus 70 ~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 70 QHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444444444443 46666777777777777644321 234578888888765544443445566666666544
Q ss_pred HHHHHHhHHHHHHHhccCCcHHHH---HHHHHHHHhhhhhhCHHh----HHHhHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008806 313 PELAIQHILPCVKELSSDSSQHVR---SALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (553)
Q Consensus 313 ~~~~~~~l~~~l~~l~~d~~~~vr---~~~~~~l~~l~~~~~~~~----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~ 385 (553)
.....+.....+..++...-|.-| -+....+..+.+.-+... ..+.++.++.+++..+..+ ..+...|..+
T Consensus 150 ~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~i 227 (435)
T PF03378_consen 150 SSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESI 227 (435)
T ss_dssp --S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHH
Confidence 222222222333333444445422 233334444443333222 1345677777888655433 4477888888
Q ss_pred hhhhchhhHHhh---HHHHH-HHhhcCCCcHHHHHHHHHHHHHHhhhChhhh
Q 008806 386 NQVIGIDLLSQS---LLPAI-VELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (553)
Q Consensus 386 ~~~~~~~~~~~~---ll~~l-~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~ 433 (553)
+..+..+.+.+. +...+ .++-+++........+..++.++...|.+.+
T Consensus 228 v~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l 279 (435)
T PF03378_consen 228 VENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL 279 (435)
T ss_dssp HHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 888877654333 22222 2333456677777777777777766666543
No 224
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=28 Score=43.36 Aligned_cols=261 Identities=16% Similarity=0.196 Sum_probs=145.9
Q ss_pred hHHHHHHHhhhCCChhHHHHHHHHHHHhhcc----CCcc------hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 008806 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKL----LEPQ------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~----~~~~------~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 271 (553)
.+++.+...+..++..++.++..++..+-.. ++.. .....+++-+.++|.|+.|.-|.+.+..++.+...
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 4677777788889999998888877665443 2321 23456788888999999999999998888888777
Q ss_pred hCCCcc---ccchHHHHHHhcCCCcHHHHH----HHHHHHHHHHHh----hCHH----HHHHhHHHHHHHhccCCcHHHH
Q 008806 272 VGPEPT---RMDLVPAYVRLLRDNEAEVRI----AAAGKVTKFCRI----LNPE----LAIQHILPCVKELSSDSSQHVR 336 (553)
Q Consensus 272 ~~~~~~---~~~llp~l~~ll~d~~~~vr~----~a~~~l~~~~~~----~~~~----~~~~~l~~~l~~l~~d~~~~vr 336 (553)
++.... ...++..+...++|...++.. .+-..+..+... ...+ .....+.-.+..-+.+++..||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 652221 123444455555555433332 222222222221 1111 2233444445556678899999
Q ss_pred HHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh---------CCCChHHHHHHHHHHHHhhhhhchhhHH--hhHH---HH-
Q 008806 337 SALASVIMGMAPLLGKDATIEQLLPIFLSLL---------KDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLL---PA- 401 (553)
Q Consensus 337 ~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l---------~d~~~~VR~~a~~~l~~~~~~~~~~~~~--~~ll---~~- 401 (553)
..+..++..++...|.... .++..+.+.+ .-....+.-..+.++.. |-.+|++.+. ..+. -.
T Consensus 1144 ~~~~~~L~~i~~~s~~~v~--~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~f-C~~l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVV--KLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITF-CLSLGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred HHHHHHHHHHHHHcCCcHH--HHHHHHHHHHhccccccccccCCHHHHhhhHHHHHH-HHHcCCcccCchHHHHHHHHHH
Confidence 9999999999988866532 2222222222 21222222222222221 2223332110 0000 00
Q ss_pred -------------HHHhhcCC----CcHHHHHHHHHHHHHHhhhCh-----hhhHHHHHHHHHHHccCCchHHHHHHHHH
Q 008806 402 -------------IVELAEDR----HWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDAAANN 459 (553)
Q Consensus 402 -------------l~~~~~d~----~~~vR~~~~~~l~~i~~~~~~-----~~~~~~l~~~l~~~l~D~~~~VR~~a~~~ 459 (553)
+......+ ....|.++++++.......+. ..+.+.++-.+++.+..+..++-+.+..+
T Consensus 1221 ~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1221 IALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred HHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11111111 234577777777766554332 12446677777788888888888888888
Q ss_pred HHHHHH
Q 008806 460 LKRLAE 465 (553)
Q Consensus 460 l~~l~~ 465 (553)
+.....
T Consensus 1301 l~~v~~ 1306 (3550)
T KOG0889|consen 1301 LRKVLA 1306 (3550)
T ss_pred HHhhhh
Confidence 876664
No 225
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.24 E-value=2.8 Score=39.41 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=77.3
Q ss_pred HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh---H-----HHhHHHHHHHhhC--------CCChHHHHHHHH
Q 008806 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---T-----IEQLLPIFLSLLK--------DEFPDVRLNIIS 380 (553)
Q Consensus 317 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~---~-----~~~l~p~l~~~l~--------d~~~~VR~~a~~ 380 (553)
..-++|.+..++.|.+..+|...+.++..+....+... . .+.+.+.+..++. +++..+-..+..
T Consensus 117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~ 196 (282)
T PF10521_consen 117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP 196 (282)
T ss_pred hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence 46789999999999999999999999999998766554 2 2333444444443 445556666666
Q ss_pred HHHHhhhhhch---h----hHHhhHHHHHHHhh----cCCCcHHHHHHHHHHHHHHhhhChhh--hHHHHHHHHHHHccC
Q 008806 381 KLDQVNQVIGI---D----LLSQSLLPAIVELA----EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD 447 (553)
Q Consensus 381 ~l~~~~~~~~~---~----~~~~~ll~~l~~~~----~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~D 447 (553)
++-.++..... . .+.+.+...+.... +-++.+++...+..+..+...+|... +.+.++|.+.+.+.+
T Consensus 197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 66666554211 0 01111111111111 11246666666677766666666543 335566666665555
Q ss_pred C
Q 008806 448 K 448 (553)
Q Consensus 448 ~ 448 (553)
+
T Consensus 277 p 277 (282)
T PF10521_consen 277 P 277 (282)
T ss_pred C
Confidence 4
No 226
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.06 E-value=1.6 Score=36.30 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhhhCchhhhh-hHHHHHHHhhhCCChhHHHHHHHHH
Q 008806 177 PMVRRSAASNLGKFAATVEPAHLKT-DIMSIFEDLTQDDQDSVRLLAVEGC 226 (553)
Q Consensus 177 ~~Vr~~a~~~l~~l~~~~~~~~~~~-~l~p~l~~~~~d~~~~vr~~a~~~l 226 (553)
..+...+.++++.+....+.+.+.+ .+++.+.+++.++ ..+..|+++|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 5666667777777666555444333 3666666666433 3366666553
No 227
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=13 Score=39.03 Aligned_cols=275 Identities=15% Similarity=0.144 Sum_probs=158.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCC-ChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCC
Q 008806 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD 252 (553)
Q Consensus 174 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d 252 (553)
..-.+=|+.|+.+|..+++.+........+-|++..+-.|. +++.-..+++++..+...-.. | ...|
T Consensus 34 sTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~--------~----~v~d 101 (970)
T KOG0946|consen 34 STLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS--------P----EVMD 101 (970)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc--------h----hhcc
Confidence 34566799999999999987765555555556555555564 455556666666555432110 0 0111
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH-----HHhHHHHHHHh
Q 008806 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-----IQHILPCVKEL 327 (553)
Q Consensus 253 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~l 327 (553)
.+...-. ....+..+ +-. .+..+..+++.+..-+..||..+++-+..+...-|.+.- .+.-+..+..+
T Consensus 102 ds~qsdd-~g~~iae~---fik---~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 102 DSTQSDD-LGLWIAEQ---FIK---NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhhH-HHHHHHHH---HHc---CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 2211111 11111111 111 356788888888888999999999999998887776521 22334456677
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhCHHh---HHHhHHHHHHHhhCCC----ChHHHHHHHHHHHHhhhhhchh--hH-Hhh
Q 008806 328 SSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGID--LL-SQS 397 (553)
Q Consensus 328 ~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~----~~~VR~~a~~~l~~~~~~~~~~--~~-~~~ 397 (553)
+.|.-..+|..++-.+..+.+..+.-. ..+.+...++..+..+ ..-|-+.|+..+-.+.+.-..+ .+ ...
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~ 254 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGS 254 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccc
Confidence 889889999999999888876544321 1233334444444321 1347778888887777643222 12 245
Q ss_pred HHHHHHHhh-----cCC---CcHHHH--HHHHHHHHHHhhhChh------------hhHHHHHHHHHHHccCC--chHHH
Q 008806 398 LLPAIVELA-----EDR---HWRVRL--AIIEYIPLLASQLGVG------------FFDDKLGALCMQWLQDK--VYSIR 453 (553)
Q Consensus 398 ll~~l~~~~-----~d~---~~~vR~--~~~~~l~~i~~~~~~~------------~~~~~l~~~l~~~l~D~--~~~VR 453 (553)
.+|.|..++ .|. .|.... +...++..+-..+.+. .+..+++..+...+..+ ...|+
T Consensus 255 ~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 255 YIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred cHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 667776543 342 465432 2333333333222221 12234555555554443 45799
Q ss_pred HHHHHHHHHHHHHh
Q 008806 454 DAAANNLKRLAEEF 467 (553)
Q Consensus 454 ~~a~~~l~~l~~~~ 467 (553)
..++-+++.++...
T Consensus 335 tesiitvAevVRgn 348 (970)
T KOG0946|consen 335 TESIITVAEVVRGN 348 (970)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999888653
No 228
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=92.82 E-value=0.74 Score=34.62 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHccCCc--hHHHHHHHHHHHHHHHHhChhHHhhhhhhhh
Q 008806 408 DRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKV--YSIRDAAANNLKRLAEEFGPEWAMQHITPQK 480 (553)
Q Consensus 408 d~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D~~--~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l 480 (553)
+++|.+|..+...++.+...++.. ...+++...+.+.+.|+. ...+-.|+..|..+ |++-....++|.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l 89 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL 89 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence 457888888888888888877653 356677777777777654 44677777777666 4444455677765
No 229
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.80 E-value=11 Score=37.17 Aligned_cols=268 Identities=13% Similarity=0.033 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHHHHh------hhCchhhhhhHHHHHHHhhhCCCh--hHHHHHHHHHHHhhccCCcc----hhhhchH
Q 008806 176 MPMVRRSAASNLGKFAA------TVEPAHLKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQ----DCVAHIL 243 (553)
Q Consensus 176 ~~~Vr~~a~~~l~~l~~------~~~~~~~~~~l~p~l~~~~~d~~~--~vr~~a~~~l~~l~~~~~~~----~~~~~ll 243 (553)
+.++-.+|.+.++.+.- .++.+ ....++......+.+++. .+...++.++.. +.++.+ .....++
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d-~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~ 135 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDD-FASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLL 135 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHH
Confidence 56667777777776553 23322 222344444444444322 233333333321 123332 2222233
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhH
Q 008806 244 PVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (553)
Q Consensus 244 ~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 320 (553)
..+...-+ =++..+-......+..+....+..... ..-+|.+...+-+....+|..|...+..+...++++......
T Consensus 136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 33333322 234445455555555555554433221 234566666666777888888777776766667765433333
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHH
Q 008806 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (553)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~ 400 (553)
+....+....++ ......+.-+..+...-+......++...+..++.++- +..-......+.
T Consensus 216 ~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~ 277 (372)
T PF12231_consen 216 VLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLK 277 (372)
T ss_pred HHHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHH
Confidence 332222222222 55555555555555443333334456666666664321 000112245566
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhh-HHH-----HHHHHHHHccCCch----HHHHHHHHHHHHHH
Q 008806 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-DDK-----LGALCMQWLQDKVY----SIRDAAANNLKRLA 464 (553)
Q Consensus 401 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~-~~~-----l~~~l~~~l~D~~~----~VR~~a~~~l~~l~ 464 (553)
......++++..+|..|..+-..+.-....+.- .+. ..|....+=+.... .+|..++..++.+.
T Consensus 278 v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 278 VPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 666777888889999998888888765443221 111 23443333222333 77887777776555
No 230
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=92.76 E-value=30 Score=42.24 Aligned_cols=251 Identities=17% Similarity=0.134 Sum_probs=149.1
Q ss_pred cCCCcHHHHHHHHHHhhccccccCC--------cchhhcchhHHHh-hhccchhHHHHHHHHHHHHHHhhcChhhhhhhH
Q 008806 56 NNDDDDEVLLAMAEELGVFIPYVGG--------VEHAHVLLPPLET-LCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 126 (553)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~--------~~~~~~l~~~l~~-l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~ 126 (553)
+..+++++|..++..+..+...... -++...++..+.. ...|.++.+|......+. +.+.+....+..
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~ 566 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDL 566 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchh
Confidence 5667889999997777665543222 0112233333332 335777777766554443 333343444555
Q ss_pred HHHHHHHhcCCCcchhhhHhhhhHhhcCCCC----hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc--hhhh
Q 008806 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAP----DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLK 200 (553)
Q Consensus 127 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~ 200 (553)
+........+....++..+...+|.++..-. +..+...+....++-.+....+....+..+..+...... ..+.
T Consensus 567 lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v 646 (2341)
T KOG0891|consen 567 LRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV 646 (2341)
T ss_pred HHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc
Confidence 6666667777778888888887776655322 223444455555555566666666666555554433221 1122
Q ss_pred hhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhCC---
Q 008806 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP--- 274 (553)
Q Consensus 201 ~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~-~~vR~~~~~~l~~l~~~~~~--- 274 (553)
+.++-.+...+.+.+..+-.++..+++.++...+.+ .+.+.+++.+.+.+.|.+ ..-|.++.++++++...-|-
T Consensus 647 ~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~ 726 (2341)
T KOG0891|consen 647 GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVD 726 (2341)
T ss_pred CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEec
Confidence 233344444567787888888889999999887732 344567777777666654 44566778889998876442
Q ss_pred -CccccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHH
Q 008806 275 -EPTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCR 309 (553)
Q Consensus 275 -~~~~~~llp~l~~ll~d~-~~~vr~~a~~~l~~~~~ 309 (553)
....+.++..+...++.. ...+|.+++..++..+.
T Consensus 727 p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 727 PYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred ccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence 111245666666555443 46788888888875443
No 231
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.72 E-value=4.9 Score=40.25 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=74.9
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCC--------cHHHHHHHHHHHHhhhhh--hCHHhHH
Q 008806 287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS--------SQHVRSALASVIMGMAPL--LGKDATI 356 (553)
Q Consensus 287 ~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~--------~~~vr~~~~~~l~~l~~~--~~~~~~~ 356 (553)
+.+...++..|..|+++|.. +.-+..++|.+..++.+. +-..-..++.....+... +--+.+.
T Consensus 214 ~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYl 286 (576)
T KOG2549|consen 214 EACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYL 286 (576)
T ss_pred HHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHH
Confidence 33444556677777776643 111345556655554332 222222222222222221 0112224
Q ss_pred HhHHHHHHHhh----------CCCChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCC--CcHHHHHHHHHHH
Q 008806 357 EQLLPIFLSLL----------KDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR--HWRVRLAIIEYIP 422 (553)
Q Consensus 357 ~~l~p~l~~~l----------~d~~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~--~~~vR~~~~~~l~ 422 (553)
..++|.++.++ .|..+.+|..|+..+..++..++... ++..+...+.+.+.|+ .|..+..++..+.
T Consensus 287 h~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~ 366 (576)
T KOG2549|consen 287 HQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLS 366 (576)
T ss_pred HHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Confidence 55666666654 35668899999999988888877543 3455666666666664 5778888888887
Q ss_pred HHHh
Q 008806 423 LLAS 426 (553)
Q Consensus 423 ~i~~ 426 (553)
.++.
T Consensus 367 ~lg~ 370 (576)
T KOG2549|consen 367 ELGH 370 (576)
T ss_pred Hhhh
Confidence 7765
No 232
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=20 Score=40.84 Aligned_cols=265 Identities=13% Similarity=0.126 Sum_probs=135.1
Q ss_pred HHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHH----HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccch
Q 008806 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV----IVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDL 281 (553)
Q Consensus 208 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~----l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l 281 (553)
.+-+.-.+...|..|..-+..+......+.... ++|. ..+++.|.+..||...-..+..+...++.... .+.+
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~-il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDTEELKG-ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccchHHhh-hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 333455667777777777777766555544433 3433 23466677777777777777777777665432 2345
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHH
Q 008806 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 361 (553)
Q Consensus 282 lp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p 361 (553)
+|...-...|.+..|-.+|...+..... ++.. .++ ...+.. .....+..+....+++. .....-
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~---~ek~-~~v----~~~c~~-------~i~~~~~~~~~~~~~~s-lSd~~~ 189 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDGFA---EEKD-RHV----WFKCDP-------EIFYLVTEILVKETPDS-LSDLRT 189 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhhcC---hhhh-HHH----HHHhhH-------HHHHHHHHHHhccCccc-cchhhh
Confidence 5555555566666665555554443222 1110 111 000000 00011111110111110 000000
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhH---------HHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh-
Q 008806 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL---------LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG- 431 (553)
Q Consensus 362 ~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~l---------l~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~- 431 (553)
.-..-+......|...++.++..+....|.+.-.... -..+-.+++++...+|.+..+.+..+...+..-
T Consensus 190 ~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~ 269 (1312)
T KOG0803|consen 190 LSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRV 269 (1312)
T ss_pred cchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhc
Confidence 0011111223455666666777666555543211111 123445678888899999888888777654332
Q ss_pred --hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHh------hhhhhhhhhhhhhhccc
Q 008806 432 --FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM------QHITPQKSHVLDCCQWS 490 (553)
Q Consensus 432 --~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~------~~i~p~l~~~l~~~~~~ 490 (553)
.-..++.|.+.....+.+ -|.-..++++.-+...+...|.. ..++|.+.+.+....|+
T Consensus 270 ~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~irkn~~~ 335 (1312)
T KOG0803|consen 270 MESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIRKNGFF 335 (1312)
T ss_pred chhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHhhcccc
Confidence 123456666666565555 66666666666566666655542 45788877777644444
No 233
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.70 E-value=11 Score=36.97 Aligned_cols=171 Identities=14% Similarity=0.188 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHHHhhh-CchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCC
Q 008806 176 MPMVRRSAASNLGKFAATV-EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254 (553)
Q Consensus 176 ~~~Vr~~a~~~l~~l~~~~-~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~ 254 (553)
+..=|.+|.+-+..+.+.- +.+.+...++-.+....+++++..|..|++++.+++-.-+.-.....-+..+.+.+.|..
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGS 160 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhcc
Confidence 3445888888888887763 334455566777777888999999999999998887553332222233455555555555
Q ss_pred HHHHHHHHHHHHHHHHHh------CCCccccchHHHHHHh----cCCCcH-HHHHHHHHHHHHHHHhh------CHHHHH
Q 008806 255 WRVRYMVANQLYELCEAV------GPEPTRMDLVPAYVRL----LRDNEA-EVRIAAAGKVTKFCRIL------NPELAI 317 (553)
Q Consensus 255 ~~vR~~~~~~l~~l~~~~------~~~~~~~~llp~l~~l----l~d~~~-~vr~~a~~~l~~~~~~~------~~~~~~ 317 (553)
...-.+++.++-.+...- ......+.++..+... .++... +.-.++..++..+.+.. +.+.+
T Consensus 161 ~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~- 239 (371)
T PF14664_consen 161 FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF- 239 (371)
T ss_pred HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-
Confidence 444444444444433211 1111112234444433 222221 23344555555555432 11111
Q ss_pred HhHHHHHHHhccCCcHHHHHHHHHHHHhhhh
Q 008806 318 QHILPCVKELSSDSSQHVRSALASVIMGMAP 348 (553)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~ 348 (553)
.-+..+...+.-++..+|..++..+..+..
T Consensus 240 -~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 240 -RGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred -hHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 223344455566778888888887777654
No 234
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.53 E-value=1.3 Score=42.78 Aligned_cols=114 Identities=20% Similarity=0.249 Sum_probs=65.2
Q ss_pred hCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCC-------CcHHHHHHHHHHHHHHhh--hChhhhHHHH
Q 008806 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDDKL 437 (553)
Q Consensus 367 l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~-------~~~vR~~~~~~l~~i~~~--~~~~~~~~~l 437 (553)
+.+.+...|..|+..|.. +.-...++|.+..+..+. +...-...+.++..+... +.-+.+...+
T Consensus 187 ~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~L 259 (343)
T cd08050 187 LVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQL 259 (343)
T ss_pred HhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHH
Confidence 333455555555544331 111245566655554322 333333444444444432 2334566678
Q ss_pred HHHHHHHc----------cCCchHHHHHHHHHHHHHHHHhChhHH--hhhhhhhhhhhhhhh
Q 008806 438 GALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQKSHVLDCC 487 (553)
Q Consensus 438 ~~~l~~~l----------~D~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~p~l~~~l~~~ 487 (553)
+|.+++++ .+....+|..|+..++.+++.++..+. ...|...+.+.+.++
T Consensus 260 ip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 260 IPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDP 321 (343)
T ss_pred HHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC
Confidence 88888765 346678999999999999999987632 345555555555544
No 235
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.33 E-value=10 Score=35.86 Aligned_cols=178 Identities=18% Similarity=0.113 Sum_probs=121.7
Q ss_pred hHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCHHHHHH---hHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHH
Q 008806 281 LVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPELAIQ---HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI 356 (553)
Q Consensus 281 llp~l~~ll~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 356 (553)
+-..+.++++-. -..|...|++....+.+.+|++.+.. ...|-+..++...+-.||-..+..+....--+|+ ...
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~ 133 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR 133 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence 344455555433 25788999999999999999886543 3456677777888889999999998887777777 333
Q ss_pred HhHHHH---HHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhC----
Q 008806 357 EQLLPI---FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---- 429 (553)
Q Consensus 357 ~~l~p~---l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---- 429 (553)
..+.++ +...+.|+..++-+.+...+..+...+|.+.+-+.+.-.+. .++..|..++..+..-.....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence 333333 44455788899999999999999999988754333332222 466788888777754333222
Q ss_pred --h-hh---h----HHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 430 --V-GF---F----DDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 430 --~-~~---~----~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
. +. + ..-++..+...+.|++.-|+..+++.+-.-.
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 0 00 0 1236677788899999999988888765433
No 236
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.29 E-value=2.3 Score=35.16 Aligned_cols=83 Identities=8% Similarity=0.072 Sum_probs=59.9
Q ss_pred hHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-----HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhCchh
Q 008806 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAH 198 (553)
Q Consensus 125 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-----~~~~l~~~l~~ll~d-~~~~Vr~~a~~~l~~l~~~~~~~~ 198 (553)
..+..+.+-+.+.++.+...++.++..++.++|.. ...+++..+.+++.+ .++.|+..+...+..++..+.++.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~ 116 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP 116 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 45555666666777888888888888888888876 234677778888877 788899999999988888777544
Q ss_pred hhhhHHHHH
Q 008806 199 LKTDIMSIF 207 (553)
Q Consensus 199 ~~~~l~p~l 207 (553)
-...+...+
T Consensus 117 ~l~~i~~~y 125 (144)
T cd03568 117 SLSLMSDLY 125 (144)
T ss_pred ccHHHHHHH
Confidence 333333333
No 237
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=91.95 E-value=0.71 Score=34.72 Aligned_cols=71 Identities=21% Similarity=0.357 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHH
Q 008806 251 QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILPCVK 325 (553)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~llp~l~~ll~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~ 325 (553)
.|.+|.+|..+++.++.++..++... ....+...+.+.+.|+. ...+-.|+..|..+ |++.+...++|.+.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK 90 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence 36689999999999999999988653 33467777777777765 45677777777765 55655556666553
No 238
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.79 E-value=0.41 Score=29.56 Aligned_cols=29 Identities=31% Similarity=0.252 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 008806 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFA 191 (553)
Q Consensus 163 ~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~ 191 (553)
..+|.+.++++++++.|++.++.+|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35788888899999999999999998876
No 239
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=11 Score=34.88 Aligned_cols=99 Identities=20% Similarity=0.122 Sum_probs=54.6
Q ss_pred HHHhcCCCcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc-hhhhhhHHHH
Q 008806 131 KRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSI 206 (553)
Q Consensus 131 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~l~p~ 206 (553)
..++.+.++.+|..|++.+-.+....+.. +....++.+.+++.|..+ -+.++.++++++..-+- +...+.++..
T Consensus 9 v~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~k~ 86 (353)
T KOG2973|consen 9 VELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLLKV 86 (353)
T ss_pred HHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34556666667776666554444331111 334567777788887777 55566777777654321 1222333444
Q ss_pred HHHhhhCCChhHHHHHHHHHHHhhc
Q 008806 207 FEDLTQDDQDSVRLLAVEGCAALGK 231 (553)
Q Consensus 207 l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (553)
+...+.|+.+..-..++..+.++++
T Consensus 87 l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 87 LMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHhcCcccchHHHHHHHHHHhcc
Confidence 4445566655555555556666554
No 240
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.58 E-value=7.8 Score=32.94 Aligned_cols=109 Identities=21% Similarity=0.109 Sum_probs=53.6
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHH---hhHHHHHHHhhcCC-CcHHHHHHHHHHHHHHhhhChh-h
Q 008806 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG-F 432 (553)
Q Consensus 358 ~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~---~~ll~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~~-~ 432 (553)
++...+.++++++++.-|..++..++..++.-|.+.+. ...+..+...++.+ ...++..++.++..+....... .
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34444455555555555555555555555443333221 22222333333322 2345555555555555433221 0
Q ss_pred --------hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 433 --------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 433 --------~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
..+.+++.++.++++ ..+...+++++..+...+.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 123455566666665 5667777888887777654
No 241
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=91.49 E-value=0.4 Score=29.60 Aligned_cols=28 Identities=25% Similarity=0.105 Sum_probs=20.4
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 437 LGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 437 l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
.+|.+..++.+++..|+..|+.+++.++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677777777777777777777777664
No 242
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=91.49 E-value=20 Score=37.58 Aligned_cols=266 Identities=13% Similarity=0.138 Sum_probs=138.7
Q ss_pred ChhHHHHHHHHHHHhhccCCcchh-hhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc----
Q 008806 215 QDSVRLLAVEGCAALGKLLEPQDC-VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL---- 289 (553)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~-~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll---- 289 (553)
++++-..++++.+....+++-... .+..++.+.+.++ ...+|.+++.++-.+...--+...+-.++..+.+.+
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg 283 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG 283 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence 778888899999999988766433 3447777777766 567999999998877643111111112333332211
Q ss_pred ---CC--CcHHHHHHHHHHHHHHHH-----------hhCH---H---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhh
Q 008806 290 ---RD--NEAEVRIAAAGKVTKFCR-----------ILNP---E---LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (553)
Q Consensus 290 ---~d--~~~~vr~~a~~~l~~~~~-----------~~~~---~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~ 347 (553)
.| .|.+.-....+-+..++- ..++ + .....++|.+.+++.+.....-......+....
T Consensus 284 ~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl 363 (980)
T KOG2021|consen 284 YHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYL 363 (980)
T ss_pred hhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 12 223332222221111110 0011 1 112336677777776665544444444333332
Q ss_pred hhhCHHh---------HHHhHHHHHHHhh------CCCC----------hHHHHHHHHHHHHhhhhhchhhHHhhHHHHH
Q 008806 348 PLLGKDA---------TIEQLLPIFLSLL------KDEF----------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (553)
Q Consensus 348 ~~~~~~~---------~~~~l~p~l~~~l------~d~~----------~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l 402 (553)
..+.+.. ....+...+.++. +|++ .++|... +.+...+..+.++.....+-..+
T Consensus 364 ~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkL-k~fqdti~~idpsl~l~~Ir~sl 442 (980)
T KOG2021|consen 364 AFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKL-KNFQDTIVVIDPSLFLNNIRQSL 442 (980)
T ss_pred HHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHH
Confidence 2222111 1122222333322 1222 2566665 34444444556665555555555
Q ss_pred HHhh---cCCCcHHHHHHHHHHHHHHhhhChhh------------hHHHHHHHHHH--HccCCchHHHHHHHHHHHHHHH
Q 008806 403 VELA---EDRHWRVRLAIIEYIPLLASQLGVGF------------FDDKLGALCMQ--WLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 403 ~~~~---~d~~~~vR~~~~~~l~~i~~~~~~~~------------~~~~l~~~l~~--~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
...+ ...+|..-+.++..+-.+++.+.... ....+.+.+++ .+..+.+.|...-.+.+-+..+
T Consensus 443 S~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~k 522 (980)
T KOG2021|consen 443 SAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNK 522 (980)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Confidence 4443 45689988999998888888653321 22234444443 4556777888777777777665
Q ss_pred HhChhHHhhhhhhhhhhhhhh
Q 008806 466 EFGPEWAMQHITPQKSHVLDC 486 (553)
Q Consensus 466 ~~~~~~~~~~i~p~l~~~l~~ 486 (553)
.+..+ ..-+|.+....-+
T Consensus 523 ff~~e---sq~ip~vL~aFld 540 (980)
T KOG2021|consen 523 FFSTE---SQKIPLVLNAFLD 540 (980)
T ss_pred HHhcc---hhhhHHHHHHHcc
Confidence 55433 2345666555444
No 243
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=91.48 E-value=17 Score=36.53 Aligned_cols=189 Identities=14% Similarity=0.202 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhhhCc---h---hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC
Q 008806 162 TELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---A---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (553)
Q Consensus 162 ~~l~~~l~~ll~d~-~~~Vr~~a~~~l~~l~~~~~~---~---~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 234 (553)
+.+...+...++++ +|.--...-++++.+.+.... + .+.+.++|.+...+..+-.+.--.+.+.++.+.+..+
T Consensus 70 ~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 70 QHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444555555443 567777788888888876543 1 3567899999988887766665667777777776654
Q ss_pred cc---hhhhchHHHHHHhcCCCCHHHH---HHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCCcHHHHHHHHHHH
Q 008806 235 PQ---DCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKV 304 (553)
Q Consensus 235 ~~---~~~~~ll~~l~~l~~d~~~~vR---~~~~~~l~~l~~~~~~~~----~~~~llp~l~~ll~d~~~~vr~~a~~~l 304 (553)
.. .....++|.+. ...-|.-| -+..+.|..+...-+... ....++-++.+++.....+ ..+.+-|
T Consensus 150 ~~~~p~~y~~L~~~Ll---~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL 224 (435)
T PF03378_consen 150 SSPLPDAYKQLFPPLL---SPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLL 224 (435)
T ss_dssp --S--TTTGGGHHHHT---SGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHH
T ss_pred CCCCcHHHHHHHHHHc---CcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHH
Confidence 21 12233444443 32333322 233444444444333222 1235777777888765433 3567777
Q ss_pred HHHHHhhCHHHH---HHhHHHHH-HHhccCCcHHHHHHHHHHHHhhhhhhCHHhH
Q 008806 305 TKFCRILNPELA---IQHILPCV-KELSSDSSQHVRSALASVIMGMAPLLGKDAT 355 (553)
Q Consensus 305 ~~~~~~~~~~~~---~~~l~~~l-~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (553)
..+...++.+.+ ...+...+ .++-+.+..+....++..++.++...|.+..
T Consensus 225 ~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l 279 (435)
T PF03378_consen 225 ESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL 279 (435)
T ss_dssp HHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 888888776543 22333333 3333456677777777777777666666543
No 244
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.46 E-value=1.3 Score=38.63 Aligned_cols=71 Identities=28% Similarity=0.214 Sum_probs=54.5
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
+..++.+.+.+.+++..+|..+++.+..+...-=.. ....+|.+..+.+|+++.+|..|...+..+.+..+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn--P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN--PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC--hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 556777777888888899999998888877531011 13578888888999999999999999888887764
No 245
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=91.31 E-value=17 Score=36.28 Aligned_cols=250 Identities=11% Similarity=0.050 Sum_probs=121.4
Q ss_pred CCChhHHHHHHHHHHHhhccCCcch----hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHH
Q 008806 213 DDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYV 286 (553)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~llp~l~ 286 (553)
|+.|.--..+-+.+..+....+.+. +...++-.+..+++.++++-|..+...++.+-..+.... ....+...+.
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~ 180 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFY 180 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4444444444445555444433322 223455566777788888888888888888766543321 1122334444
Q ss_pred HhcCCC-cHHHHHHHHHHHHHHHHhhC---HHHHHHhHHHHHHHhccCCcH-HHHHHHHHHHHhhhhhhCHHhHHHhHHH
Q 008806 287 RLLRDN-EAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGKDATIEQLLP 361 (553)
Q Consensus 287 ~ll~d~-~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~l~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~p 361 (553)
+.+.+. ....-..+++-++.+...+. .+.....+...+..+...+.. ........++..+...- +. ....++.
T Consensus 181 ~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~-l~~~~i~ 258 (409)
T PF01603_consen 181 RFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PS-LAEPVIK 258 (409)
T ss_dssp HHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GG-GHHHHHH
T ss_pred HHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-ch-hHHHHHH
Confidence 444322 22233445555555555432 122223333444444444432 22344444444444311 11 1122233
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHH---hhHHHHHHHhhcCCCcHHHHHHHHHHHH--HHhhhChhhhHHH
Q 008806 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPL--LASQLGVGFFDDK 436 (553)
Q Consensus 362 ~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~---~~ll~~l~~~~~d~~~~vR~~~~~~l~~--i~~~~~~~~~~~~ 436 (553)
.+...---.+..=....+.-+..++..++++.+. ..+...+...+.+++..|-+.|+..+.. +...+. .....
T Consensus 259 ~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~--~~~~~ 336 (409)
T PF01603_consen 259 GLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLIS--QNSRV 336 (409)
T ss_dssp HHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHH--CTHHH
T ss_pred HHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHH--hChHH
Confidence 3332222233333444556667777766665543 3444555666788999998888766542 122221 12244
Q ss_pred HHHHHHHHccC-----CchHHHHHHHHHHHHHHHH
Q 008806 437 LGALCMQWLQD-----KVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 437 l~~~l~~~l~D-----~~~~VR~~a~~~l~~l~~~ 466 (553)
++|.+...+.. =+..||..|..++..+.+.
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 56666654432 2457999999998888763
No 246
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=21 Score=36.93 Aligned_cols=283 Identities=14% Similarity=0.133 Sum_probs=147.1
Q ss_pred HHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHhhhCchhhhhhH
Q 008806 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMP--MVRRSAASNLGKFAATVEPAHLKTDI 203 (553)
Q Consensus 126 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~--~Vr~~a~~~l~~l~~~~~~~~~~~~l 203 (553)
.+-++.....+++..+|.+++--+|..+..-..+ +++..+...+.|.+. +|..-++-+||.+.-..-++++...+
T Consensus 453 alALLsdyv~~~~s~~ri~aIlGLglayaGsq~e---~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~i 529 (878)
T KOG2005|consen 453 ALALLSDYLQSSSSIHRIGAILGLGLAYAGSQRE---EVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSI 529 (878)
T ss_pred HHHHHHHhccCCCceeehHHhhhhHHhhcCCchH---HHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHH
Confidence 5566677778888899999888888777654443 333355555555544 47666666777655433335555666
Q ss_pred HHHHHHhhh--CCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 008806 204 MSIFEDLTQ--DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 281 (553)
Q Consensus 204 ~p~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 281 (553)
+..+.+-.+ -++...|..++..-.- ++++....+.....+.. -+...|. .+..+-..|...|...... +
T Consensus 530 lqtlmekse~El~d~~~RFL~LGL~ll---flgkqe~~d~~~e~~~~----i~~~~~~-~~~~lv~~caYaGTGnvl~-I 600 (878)
T KOG2005|consen 530 LQTLMEKSETELEDQWFRFLALGLALL---FLGKQESVDAVVETIKA----IEGPIRK-HESILVKSCAYAGTGNVLK-I 600 (878)
T ss_pred HHHHHHhhhhhhhchHHHHHHHHHHHH---HhcccchHHHHHHHHHH----hhhHHHH-HHHHHHHHhhccccCceEE-e
Confidence 666554332 2455666655422111 12222222222222211 1122333 3344555555555433211 1
Q ss_pred H-HHHHHhcCCCc--HHH-HHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHH
Q 008806 282 V-PAYVRLLRDNE--AEV-RIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 357 (553)
Q Consensus 282 l-p~l~~ll~d~~--~~v-r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 357 (553)
- ..+...+.+.+ .+. ..-|+ |+.-.-.+|.+.-.+..+-.+-.++.-.++++|+++--+++-++..-++-
T Consensus 601 q~q~ll~~cgE~~~~~e~~~~~av--LgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~---- 674 (878)
T KOG2005|consen 601 QSQLLLSFCGEHDADLESEQELAV--LGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV---- 674 (878)
T ss_pred chhhhhhhcCCCccchhhhccchh--hhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc----
Confidence 0 11222233222 111 11111 22111122333334455566666777788999999999998887543322
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHH-hhcCCCcHHHHHHHHHHHHHHhh
Q 008806 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQ 427 (553)
Q Consensus 358 ~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~-~~~d~~~~vR~~~~~~l~~i~~~ 427 (553)
.++..+.+...|.+.+|-..++.+++-+.....+.-+ ..++..+-. ..+|.+...-...++.+..+++.
T Consensus 675 ~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARl-a~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKG 744 (878)
T KOG2005|consen 675 NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARL-AQMLRQLASYYYKDSKALFVVRIAQGLVHLGKG 744 (878)
T ss_pred hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHhcCC
Confidence 3677888999999999999999999987654332222 222222222 23455433333344555555543
No 247
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=91.09 E-value=21 Score=36.92 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=64.5
Q ss_pred HHHHHHHhhhhhchhhHHhhHHHHHHHhh-cCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHH----HHccCCchHH
Q 008806 378 IISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM----QWLQDKVYSI 452 (553)
Q Consensus 378 a~~~l~~~~~~~~~~~~~~~ll~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~----~~l~D~~~~V 452 (553)
.+..++.+.+.+.++.+ .+++-.+..++ .++.-.+|-++++.++.+++...++.......|.+. .++.|++..|
T Consensus 461 lL~l~~~~~~~l~~~~i-~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll 539 (559)
T PF14868_consen 461 LLSLLSFFIQLLDPQLI-EQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLL 539 (559)
T ss_pred HHHHHHHHHHhcChHHH-HHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHH
Confidence 33444555555555555 45555566665 445556999999999999988766655555555554 4689999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 008806 453 RDAAANNLKRLAEEFG 468 (553)
Q Consensus 453 R~~a~~~l~~l~~~~~ 468 (553)
++.|+++++.+++...
T Consensus 540 ~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 540 HQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999999998654
No 248
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=91.01 E-value=0.5 Score=29.37 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=20.5
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHH
Q 008806 435 DKLGALCMQWLQDKVYSIRDAAANNL 460 (553)
Q Consensus 435 ~~l~~~l~~~l~D~~~~VR~~a~~~l 460 (553)
+.+...+...+.|+++.||.+|++.+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45677777888999999999888753
No 249
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=90.82 E-value=18 Score=35.63 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=60.7
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh------------------HHhhHHHHHHHhhcCC-CcHHHHHHHHH
Q 008806 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL------------------LSQSLLPAIVELAEDR-HWRVRLAIIEY 420 (553)
Q Consensus 360 ~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~------------------~~~~ll~~l~~~~~d~-~~~vR~~~~~~ 420 (553)
+|.+...+-+....+|..|...+..+...+|++. +.+.+.+.+..+..++ +.. .+.+.
T Consensus 177 ~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~---~a~~i 253 (372)
T PF12231_consen 177 FPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYK---LAMQI 253 (372)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcc---hHHHH
Confidence 3444444444455566655555555544444321 1233444555665552 211 22233
Q ss_pred HHHHHhhhCh-----hhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh
Q 008806 421 IPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 421 l~~i~~~~~~-----~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
-+.+...+|. -.+...++.....+++++++.+|..|..+...++-....+
T Consensus 254 W~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 254 WSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred HHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3333333332 2344567777778899999999999999999999866543
No 250
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.67 E-value=16 Score=35.04 Aligned_cols=184 Identities=7% Similarity=0.040 Sum_probs=107.9
Q ss_pred hhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccC-Ccch--h------h-hchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 008806 199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EPQD--C------V-AHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (553)
Q Consensus 199 ~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~~--~------~-~~ll~~l~~l~~d~~~~vR~~~~~~l~~l 268 (553)
....+++.+...+..-+.+.|..+...+..+...- +... . . +.++..+....++++-. -..|.+
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dia------l~~g~m 146 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIA------LNCGDM 146 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTH------HHHHHH
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcccc------chHHHH
Confidence 34466777777777788889999888888877662 2211 1 1 34666666666655521 222222
Q ss_pred HHHhCCCc------cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHH---HHHhHHHHHHHhccCCcHHHH
Q 008806 269 CEAVGPEP------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PEL---AIQHILPCVKELSSDSSQHVR 336 (553)
Q Consensus 269 ~~~~~~~~------~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~---~~~---~~~~l~~~l~~l~~d~~~~vr 336 (553)
...+-... .....+-.+.+....++.+|-..|..++..+..... .+. -.+.+...+..+++++|.-+|
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 22221100 011222335566778888898888888877655311 111 123455567788888999999
Q ss_pred HHHHHHHHhhhhhhCHHh------HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhh
Q 008806 337 SALASVIMGMAPLLGKDA------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (553)
Q Consensus 337 ~~~~~~l~~l~~~~~~~~------~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~ 388 (553)
...++.++.+...-.... ....-+..+..+|+|.+..++..|...+..++..
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999998863211111 1234567788888898889999888888887764
No 251
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=90.66 E-value=21 Score=36.36 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=71.2
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH-hHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh----H
Q 008806 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----T 355 (553)
Q Consensus 281 llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~ 355 (553)
.-..++....|-++.+|..+..+++.++..++. .+.. ..+...--.+.|.+..||..+.+.+..++..-+... +
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~-yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPD-YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcchH-HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 344556667888899999999999988776643 3322 223333345788899999999999999887654332 2
Q ss_pred HHhHHHHHHHhhC-CCChHHHHHHHHHHHHhhh
Q 008806 356 IEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQ 387 (553)
Q Consensus 356 ~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~ 387 (553)
.+.+...+++.+. |.+- ||..+++.+..+..
T Consensus 355 ~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 355 VERFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 3444455555553 4444 99999998887754
No 252
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.58 E-value=4.8 Score=31.30 Aligned_cols=61 Identities=13% Similarity=0.011 Sum_probs=41.3
Q ss_pred CCcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhH
Q 008806 409 RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (553)
Q Consensus 409 ~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~ 471 (553)
.+...|..++.+++.+.+..+.. .+.+++.-.+...+..+ ++|..+++++..+++.++++.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence 56677888888888888833332 23344444444445444 889999999999998888654
No 253
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=90.57 E-value=18 Score=35.31 Aligned_cols=108 Identities=11% Similarity=0.082 Sum_probs=68.1
Q ss_pred HhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhc--hhhHHhhHHHHHHHh-----hcCCCcHHHHHHHHHHHHHHhhhC
Q 008806 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVEL-----AEDRHWRVRLAIIEYIPLLASQLG 429 (553)
Q Consensus 357 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~--~~~~~~~ll~~l~~~-----~~d~~~~vR~~~~~~l~~i~~~~~ 429 (553)
++++..+..++..++.+......-+++.++..=. .....+.++..|.+. ..|.|.++..+++.++..++.-..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 4577888888888888888888888888876421 122334444444444 346678888899999998875443
Q ss_pred hh-hh-HHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 430 VG-FF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 430 ~~-~~-~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
.. .+ ...+.+.++..+.-..+.|...-..++.-+.
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR 430 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 32 22 2235556666666666677665555554443
No 254
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=90.56 E-value=3.7 Score=35.98 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHH
Q 008806 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS 205 (553)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p 205 (553)
....++..+.++-++++...|+.+-.++|..+..+|++.+.+ ++|
T Consensus 38 ~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lP 82 (198)
T PF08161_consen 38 LLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILP 82 (198)
T ss_pred HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCC
Confidence 445566666777777788889999999999999999876653 344
No 255
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.43 E-value=20 Score=35.71 Aligned_cols=238 Identities=11% Similarity=0.100 Sum_probs=136.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-HHHHhHHHH
Q 008806 250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-LAIQHILPC 323 (553)
Q Consensus 250 ~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~-~~~-~~~~~l~~~ 323 (553)
..|++|..-..+.+.|..+......+. ....++--++.++..+|+.-|......+..+...+ +.. .+...+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 467899988888888888887654433 44568888899999999999998888887765543 221 223334444
Q ss_pred HHHhccC-CcHHHHHHHHHHHHhhhhhhC---HHhHHHhHHHHHHHhhCCCChH-HHHHHHHHHHHhhhhhchhhHHhhH
Q 008806 324 VKELSSD-SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQSL 398 (553)
Q Consensus 324 l~~l~~d-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~-VR~~a~~~l~~~~~~~~~~~~~~~l 398 (553)
+.++..+ .....-..+++.++.+...+. ++.....+...+..+.+.+... --.....++..++.. . ..+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-d-p~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-D-PSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-C-chhHHHH
Confidence 4444433 233334556777777776654 2223334444555555544332 244455555555542 1 1123556
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHH---HHHHHHHHccCCchHHHHHHHHHHH--HHHHHhChhHHh
Q 008806 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLK--RLAEEFGPEWAM 473 (553)
Q Consensus 399 l~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~---l~~~l~~~l~D~~~~VR~~a~~~l~--~l~~~~~~~~~~ 473 (553)
+..+....--.+..-....+.-+..+...++++.+... +...+-.+++.+...|-+.|+..+. .+...+... .
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~--~ 334 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQN--S 334 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCT--H
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhC--h
Confidence 66666676667777777888888888888887766543 4444556788999999999988774 334433211 2
Q ss_pred hhhhhhhhhhhh---hhcccc
Q 008806 474 QHITPQKSHVLD---CCQWSL 491 (553)
Q Consensus 474 ~~i~p~l~~~l~---~~~~~~ 491 (553)
..++|.+...+. ..+|..
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~ 355 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQ 355 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SST
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 345555555432 346764
No 256
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.39 E-value=0.41 Score=29.79 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=17.0
Q ss_pred HhHHHHHHHhhCCCChHHHHHHHHH
Q 008806 357 EQLLPIFLSLLKDEFPDVRLNIISK 381 (553)
Q Consensus 357 ~~l~p~l~~~l~d~~~~VR~~a~~~ 381 (553)
+.+...+...+.|+++.||++|+..
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4566666777777777777777654
No 257
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.27 E-value=6.1 Score=30.70 Aligned_cols=62 Identities=6% Similarity=0.083 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHHHhhhhhchhhH---HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhH
Q 008806 370 EFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 434 (553)
Q Consensus 370 ~~~~VR~~a~~~l~~~~~~~~~~~~---~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~ 434 (553)
....-|..++++++.+++ ++.+.+ ..+++..|...+..+ ..|..++++...+.+.++.+...
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~ 91 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLG 91 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHH
Confidence 456678888888888888 444432 244555555554444 78888888888888888876544
No 258
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=90.07 E-value=9.7 Score=31.43 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccC-CcHH
Q 008806 256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD-SSQH 334 (553)
Q Consensus 256 ~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~ 334 (553)
.+|...+..+..++...-++.. +.+++.+.++++.+ +......+..|..+.+.+.. .... ....
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-p~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~~ 67 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-PDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQE 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-TTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC-chHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhHH
Confidence 4677788888888876544443 45777777777664 44444555555544433211 0001 1122
Q ss_pred HHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCC----ChHHHHHHHHHHHHhhhhhchhhHH-hhHHHHHHHhhcCC
Q 008806 335 VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGIDLLS-QSLLPAIVELAEDR 409 (553)
Q Consensus 335 vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~----~~~VR~~a~~~l~~~~~~~~~~~~~-~~ll~~l~~~~~d~ 409 (553)
.|...-..+..- .+.++..+.+.+... ..++...+++++...+.....+.+. ..+++.+..++.++
T Consensus 68 r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~ 138 (148)
T PF08389_consen 68 RRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP 138 (148)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH
Confidence 233333222222 122344444444322 2778888888888888877766544 45888888888777
Q ss_pred CcHHHHHHHHHH
Q 008806 410 HWRVRLAIIEYI 421 (553)
Q Consensus 410 ~~~vR~~~~~~l 421 (553)
+. |.+|++++
T Consensus 139 ~~--~~~A~~cl 148 (148)
T PF08389_consen 139 EL--REAAAECL 148 (148)
T ss_dssp CC--HHHHHHHH
T ss_pred HH--HHHHHHhC
Confidence 66 66666654
No 259
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.06 E-value=5.1 Score=33.01 Aligned_cols=84 Identities=10% Similarity=0.064 Sum_probs=58.4
Q ss_pred hHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-----HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhhCchh
Q 008806 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAH 198 (553)
Q Consensus 125 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-----~~~~l~~~l~~ll~-d~~~~Vr~~a~~~l~~l~~~~~~~~ 198 (553)
..+..+.+-+.+.++.+...++.++..+..++|.. ....+++.+.+++. ..++.|++.++..+...+..++.+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 45556666667777888888888888888888775 23456677777665 5677899999998888888777544
Q ss_pred hhhhHHHHHH
Q 008806 199 LKTDIMSIFE 208 (553)
Q Consensus 199 ~~~~l~p~l~ 208 (553)
-...+...+.
T Consensus 121 ~l~~i~~~y~ 130 (142)
T cd03569 121 QLKYVVDTYQ 130 (142)
T ss_pred ccHHHHHHHH
Confidence 3334444333
No 260
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.00 E-value=1.4 Score=34.56 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=44.7
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhhhCchh-hhh--hHHHHHHHhhhCCChhHHHHHHHHHHHhh
Q 008806 163 ELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAH-LKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (553)
Q Consensus 163 ~l~~~l~~ll-~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~--~l~p~l~~~~~d~~~~vr~~a~~~l~~l~ 230 (553)
+++..+.+++ .+.++.+-.-|+.=+|.+++..+.-. +.+ ..-+.+.+++++++++||..|+.++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3455556655 44467777778888999998876421 111 23455677888999999999998887654
No 261
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=31 Score=37.00 Aligned_cols=160 Identities=11% Similarity=0.108 Sum_probs=97.8
Q ss_pred hhhhHHHHHHHhhhCCC-----hhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhc-----CCCCHHHHHHHHHHHHHH
Q 008806 199 LKTDIMSIFEDLTQDDQ-----DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-----QDKSWRVRYMVANQLYEL 268 (553)
Q Consensus 199 ~~~~l~p~l~~~~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~-----~d~~~~vR~~~~~~l~~l 268 (553)
..+.+...+-+++.+.+ ++.-++++..+..+++..+.... .-+|.+.+.+ +-.+++.-..+...+|..
T Consensus 459 ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~ 536 (982)
T KOG2022|consen 459 LLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSL 536 (982)
T ss_pred HHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhccccccccCChhHHHHHHHHHHHH
Confidence 33445555555555554 66778888999999988776421 1244433322 223667777888899999
Q ss_pred HHHhCCCc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhHHHHHHHhccC--CcHHHHHHHHHHH
Q 008806 269 CEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSD--SSQHVRSALASVI 343 (553)
Q Consensus 269 ~~~~~~~~-~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d--~~~~vr~~~~~~l 343 (553)
+..+++.. .....+|.+.+.+..+.. -..+..++..+++....+ ...+.++......+.. .....|..+.+++
T Consensus 537 s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sI 614 (982)
T KOG2022|consen 537 SNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSI 614 (982)
T ss_pred HHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHH
Confidence 99888653 345678889888864433 334555677777754322 1123333333333332 3356888899999
Q ss_pred HhhhhhhCHHhHHHhHHHH
Q 008806 344 MGMAPLLGKDATIEQLLPI 362 (553)
Q Consensus 344 ~~l~~~~~~~~~~~~l~p~ 362 (553)
|.+.....++....+++.+
T Consensus 615 Gyvls~~~pEe~~kyl~~l 633 (982)
T KOG2022|consen 615 GYVLSRLKPEEIPKYLMKL 633 (982)
T ss_pred HHHHHhccHHhHHHHHHHH
Confidence 9988887766554444433
No 262
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.74 E-value=6.5 Score=43.96 Aligned_cols=215 Identities=11% Similarity=0.117 Sum_probs=123.4
Q ss_pred HHhcCccHHHHHHHhhhHHHHHHhhChH--HHhhhhhhhhhhcCCC----cHHHHHHHHHHhhccccc----cCCcchhh
Q 008806 16 DELKNDDIQLRLNSIRRLSTIARALGEE--RTRKELIPFLSENNDD----DDEVLLAMAEELGVFIPY----VGGVEHAH 85 (553)
Q Consensus 16 ~~L~~~d~~~R~~a~~~l~~i~~~~~~~--~~~~~ll~~l~~~~d~----~~~vr~~~~~~l~~l~~~----~~~~~~~~ 85 (553)
....++..++|....+.+-.+....|.. ..|..+..-+....|. ...+-+....+|.-+... ++.. ...
T Consensus 849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~s-ci~ 927 (1610)
T KOG1848|consen 849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTS-CIL 927 (1610)
T ss_pred HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChH-HHH
Confidence 3444677788888888888777666542 1255555555553332 333444555566544332 2221 122
Q ss_pred cchhHHHhh-hccchhHHHHHHHHHHHHHHhhcCh-----------------------------hhhhhhHHHHHHHHhc
Q 008806 86 VLLPPLETL-CTVEETCVRDKAVESLCRIGSQMRE-----------------------------SDLVDWYIPLVKRLAA 135 (553)
Q Consensus 86 ~l~~~l~~l-~~~~~~~vR~~a~~~l~~l~~~~~~-----------------------------~~~~~~~l~~l~~~~~ 135 (553)
.++..+... .+.+|..+--.|+..+..+.+++.. +..+-.++..+.++++
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 233333222 2345666666666666666554321 2233446666778888
Q ss_pred CCCcchhhhHhhhhHhhcC----CCChHHHHHH-HHHHHHhcCC-------C--CHHHH----HHHHHHHHHHHhhhCc-
Q 008806 136 GEWFTARVSACGLFHIAYP----SAPDILKTEL-RSIYTQLCQD-------D--MPMVR----RSAASNLGKFAATVEP- 196 (553)
Q Consensus 136 ~~~~~~r~~~~~~l~~l~~----~~~~~~~~~l-~~~l~~ll~d-------~--~~~Vr----~~a~~~l~~l~~~~~~- 196 (553)
|+.+.||.+|++.+-.+.. .+++..++.+ ...+..++.. + ..+.+ +..+-.++.+++.+++
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999997766654 3444444443 4445555541 1 11221 2234456666665543
Q ss_pred ----------hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhc
Q 008806 197 ----------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (553)
Q Consensus 197 ----------~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (553)
-..++.++.++.++..+.+.++..+++.++..+..
T Consensus 1088 fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 23457788888889999999999999988876654
No 263
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.65 E-value=67 Score=40.48 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=95.9
Q ss_pred cchhHHHhhhccchhHHHHHHHHHHHHHHhhc----Ch-h-----hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCC
Q 008806 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQM----RE-S-----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (553)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~----~~-~-----~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 155 (553)
.+++.+..-+..++.+++..+..++..+.... +. + .+-.++++.+.+++.++.|..|.+++..++.++..
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 45555655566788889988888887765432 21 1 23345777778889999999999999988888888
Q ss_pred CChH----HHHHHHHHHHHhcCCCCHHHHHH----HHHHHHHHHhh----hCch----hhhhhHHHHHHHhhhCCChhHH
Q 008806 156 APDI----LKTELRSIYTQLCQDDMPMVRRS----AASNLGKFAAT----VEPA----HLKTDIMSIFEDLTQDDQDSVR 219 (553)
Q Consensus 156 ~~~~----~~~~l~~~l~~ll~d~~~~Vr~~----a~~~l~~l~~~----~~~~----~~~~~l~p~l~~~~~d~~~~vr 219 (553)
.+.. ...+++..+...+.|...++... +-..+-.+... ...+ .....++..+..-+.+++..||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 7743 44566777777777665444431 11122222211 1111 1122333444455677888999
Q ss_pred HHHHHHHHHhhccCCcc
Q 008806 220 LLAVEGCAALGKLLEPQ 236 (553)
Q Consensus 220 ~~a~~~l~~l~~~~~~~ 236 (553)
..+...+..+++..+.+
T Consensus 1144 ~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKS 1160 (3550)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 99999999988876543
No 264
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.54 E-value=0.97 Score=35.51 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHhhccccccCCc-chhh--cchhHHHhhhccchhHHHHHHHHHHHHHHh
Q 008806 60 DDEVLLAMAEELGVFIPYVGGV-EHAH--VLLPPLETLCTVEETCVRDKAVESLCRIGS 115 (553)
Q Consensus 60 ~~~vr~~~~~~l~~l~~~~~~~-~~~~--~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~ 115 (553)
++.+...+|.-+|.+++..+.. .... -.-..+..+++++|++||..|+.++..++.
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4444455555555555543321 1111 122344556666777777777777766654
No 265
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.17 E-value=19 Score=33.52 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=26.3
Q ss_pred CCchHHHHHHHHHHHHHHHHh-ChhHHh-hhhhhhhhhh
Q 008806 447 DKVYSIRDAAANNLKRLAEEF-GPEWAM-QHITPQKSHV 483 (553)
Q Consensus 447 D~~~~VR~~a~~~l~~l~~~~-~~~~~~-~~i~p~l~~~ 483 (553)
|+++.+|...++++-.++.+- |.+..+ ..+.|.+.+.
T Consensus 255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilREl 293 (353)
T KOG2973|consen 255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILREL 293 (353)
T ss_pred CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHH
Confidence 678999999999999888654 555444 3455655544
No 266
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=88.58 E-value=14 Score=32.41 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=14.5
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHH
Q 008806 436 KLGALCMQWLQDKVYSIRDAAANNLKRL 463 (553)
Q Consensus 436 ~l~~~l~~~l~D~~~~VR~~a~~~l~~l 463 (553)
.+-+.+.+.+.|. +++|...+.+|..+
T Consensus 171 ~~a~~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 171 SFAKLLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence 3444444555553 55666666666543
No 267
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=88.42 E-value=24 Score=33.80 Aligned_cols=135 Identities=11% Similarity=0.193 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhhhhhCH-HhHHHhHHHHHHH-hh---CCCChHHHHH-HHHHHHHhhhhhchhh------HHhhHHHH
Q 008806 334 HVRSALASVIMGMAPLLGK-DATIEQLLPIFLS-LL---KDEFPDVRLN-IISKLDQVNQVIGIDL------LSQSLLPA 401 (553)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~-~~~~~~l~p~l~~-~l---~d~~~~VR~~-a~~~l~~~~~~~~~~~------~~~~ll~~ 401 (553)
.+|...++.+..+...... +...+.++|.+.. .+ ++..+..|+. .+..+..++..++... +.+.+...
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4666777777776665542 2233444444333 33 3344555543 4445555565555421 11222332
Q ss_pred HHHhhcC---CCcHHHHHHHHHHHHHHhhhCh-------hhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh
Q 008806 402 IVELAED---RHWRVRLAIIEYIPLLASQLGV-------GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 402 l~~~~~d---~~~~vR~~~~~~l~~i~~~~~~-------~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
...+..+ ..+..|......+..+...+-. +.+ ..++..+.-.++++..+|-..+++++..+.+....
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f-~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQF-KLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3333332 2468999999999888876432 222 34666777778899999999999999999987755
No 268
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=88.14 E-value=35 Score=35.32 Aligned_cols=91 Identities=24% Similarity=0.335 Sum_probs=62.6
Q ss_pred HHHHHHhhhhhhCHHhHHHhHHHHHHHhh-CCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHH----hhcCCCcHH
Q 008806 339 LASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE----LAEDRHWRV 413 (553)
Q Consensus 339 ~~~~l~~l~~~~~~~~~~~~l~p~l~~~l-~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~----~~~d~~~~v 413 (553)
.+..++.+...+.++.. .+++-.+.+++ ..+...+|-+++..++.+++...++..++.+.|.+.. ++.|++|-+
T Consensus 461 lL~l~~~~~~~l~~~~i-~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll 539 (559)
T PF14868_consen 461 LLSLLSFFIQLLDPQLI-EQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLL 539 (559)
T ss_pred HHHHHHHHHHhcChHHH-HHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHH
Confidence 34444444444455443 33444555666 3444559999999999998877666655667776654 568999999
Q ss_pred HHHHHHHHHHHHhhhCh
Q 008806 414 RLAIIEYIPLLASQLGV 430 (553)
Q Consensus 414 R~~~~~~l~~i~~~~~~ 430 (553)
+..|+++++.+++..+.
T Consensus 540 ~q~ALeAF~~FAe~T~~ 556 (559)
T PF14868_consen 540 HQHALEAFGQFAERTSH 556 (559)
T ss_pred HHHHHHHHHHHhccCCc
Confidence 99999999999976543
No 269
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=87.62 E-value=19 Score=31.60 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=39.0
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 008806 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (553)
Q Consensus 205 p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 271 (553)
+.+..-..+++.-+|.++...+...... +...+.++..+..+..|++..|+.+++.+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 4455556666666666666555443322 223455666666777777777777777777776654
No 270
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.10 E-value=29 Score=33.20 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhh--hhHHHHHHHhhh----CCChhHHHHHHHHHHHhhc
Q 008806 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK--TDIMSIFEDLTQ----DDQDSVRLLAVEGCAALGK 231 (553)
Q Consensus 164 l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--~~l~p~l~~~~~----d~~~~vr~~a~~~l~~l~~ 231 (553)
.+..+.++++.+++.++..++..++.++..-+..... ..+++.+...+. .++.++...++.++..+..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 3445555788889999999999999988766542222 244444444443 3445566777777777764
No 271
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.08 E-value=8.9 Score=31.41 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHH-----HHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHhhh
Q 008806 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQD------DMPMVRRSAASNLGKFAATV 194 (553)
Q Consensus 126 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~-----~~~l~~~l~~ll~d------~~~~Vr~~a~~~l~~l~~~~ 194 (553)
.+..+.+-+++.++.+...++.++..+..++|... ...++..+.+++.+ .+..|+..++..+...+..+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44555555667777788888888888888888762 24455666666643 56889999999888888877
Q ss_pred Cc
Q 008806 195 EP 196 (553)
Q Consensus 195 ~~ 196 (553)
+.
T Consensus 119 ~~ 120 (139)
T cd03567 119 PH 120 (139)
T ss_pred cc
Confidence 64
No 272
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.08 E-value=18 Score=30.77 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=72.5
Q ss_pred HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHH---HhHHHHHHHhhCC-CChHHHHHHHHHHHHhhhhhchh
Q 008806 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI---EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGID 392 (553)
Q Consensus 317 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~p~l~~~l~d-~~~~VR~~a~~~l~~~~~~~~~~ 392 (553)
.+.+...+..+++++++.-|-..+..+...++..+.+.+. ...+..+.+.++. +...+++.++.++..+....+..
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4666777788889999999999999999988887776552 3445556666654 44678999999999998765431
Q ss_pred -h-HH-------hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh
Q 008806 393 -L-LS-------QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (553)
Q Consensus 393 -~-~~-------~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~ 428 (553)
. .+ ..+++.+..+.++ ......++.++..+....
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 1 11 2333334444443 445556666666666543
No 273
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.78 E-value=41 Score=34.72 Aligned_cols=289 Identities=15% Similarity=0.151 Sum_probs=139.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch-----------------------hhhhhHHHHHH-------Hhh
Q 008806 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-----------------------HLKTDIMSIFE-------DLT 211 (553)
Q Consensus 162 ~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~-----------------------~~~~~l~p~l~-------~~~ 211 (553)
...+..+.+++.+.++.+++-+.-+|-.+.+.+-+. .+.+.++..+. .+.
T Consensus 209 ~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~v 288 (704)
T KOG2153|consen 209 LKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFV 288 (704)
T ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667778888888888887777776654321 01112222221 112
Q ss_pred hCC------ChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHH
Q 008806 212 QDD------QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 285 (553)
Q Consensus 212 ~d~------~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l 285 (553)
++. ....-..|+.++..+....+.-.+.+.++-.+..+++|+...++..++.++..+...=+.....-.++.++
T Consensus 289 K~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i 368 (704)
T KOG2153|consen 289 KDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRII 368 (704)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 222 01122334455555554444444566677778888888888888888888888765322111111345555
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHH--hhC-HHHHHH----hHHHHHHH--hccCCcHHHHHHHHHHHHhh----------
Q 008806 286 VRLLRDNEAEVRIAAAGKVTKFCR--ILN-PELAIQ----HILPCVKE--LSSDSSQHVRSALASVIMGM---------- 346 (553)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~--~~~-~~~~~~----~l~~~l~~--l~~d~~~~vr~~~~~~l~~l---------- 346 (553)
..+++-.+.++...++..+..+-. ... .++..+ ..-..... .++..+..-+..--+.=...
T Consensus 369 ~~llK~rn~~v~~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki~rE~reaea~e~ae 448 (704)
T KOG2153|consen 369 NSLLKTRNYEVLPDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERNKIEREMREAEAEESAE 448 (704)
T ss_pred HHHhhhhcccchhhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhccccHH
Confidence 555555555555544444332211 000 000000 00000000 00101100000000000000
Q ss_pred hhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHH--HHHH
Q 008806 347 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY--IPLL 424 (553)
Q Consensus 347 ~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~--l~~i 424 (553)
.+.-........+.-++...+++.-..+--++...+..+......+.. ..++..+.+++.|..-.+|.+.... +-.|
T Consensus 449 ek~k~~sEiLkiVFtiYFrILkn~~~tll~~vlEGlakf~h~invef~-~dll~vlk~ll~d~~~~~re~l~cvqtaf~I 527 (704)
T KOG2153|consen 449 EKMKKQSEILKIVFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEFL-GDLLKVLKELLEDIELSYREALLCVQTAFCI 527 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHHh-hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 000000112344555667777766555667777778888777776665 6677788888888855555544333 3333
Q ss_pred HhhhCh------hhhHHHHHHHHHHHccCCchH
Q 008806 425 ASQLGV------GFFDDKLGALCMQWLQDKVYS 451 (553)
Q Consensus 425 ~~~~~~------~~~~~~l~~~l~~~l~D~~~~ 451 (553)
..+-|. .-|.+++...+..+..+++.+
T Consensus 528 lS~qg~~lniD~~~fv~~lY~~l~~~~~~~~~~ 560 (704)
T KOG2153|consen 528 LSGQGEKLNIDLGKFVDHLYKMLFPMNLGPDDD 560 (704)
T ss_pred hhccceeeccCHHHHHHHHHHHhcccccCCCcc
Confidence 333332 235555555555544444433
No 274
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=86.77 E-value=13 Score=34.30 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHcc------C----CchHHHHHHHHHHHHHHHHhChhHH--hhhhhhhhhhh
Q 008806 431 GFFDDKLGALCMQWLQ------D----KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQKSHV 483 (553)
Q Consensus 431 ~~~~~~l~~~l~~~l~------D----~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~p~l~~~ 483 (553)
+.+...++|.++.++- + +...+|..|+..++-.++.|+..+. .+.+..++.+.
T Consensus 272 dPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKa 336 (450)
T COG5095 272 DPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKA 336 (450)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHH
Confidence 3455667777766531 2 2346999999999999999987643 23444444443
No 275
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=86.51 E-value=47 Score=35.13 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=63.8
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhCHHh--------HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh-hHHhhHH
Q 008806 329 SDSSQHVRSALASVIMGMAPLLGKDA--------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLL 399 (553)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~--------~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-~~~~~ll 399 (553)
...+..+-++.+.++..+....+... -.+..+|.+..++..++..|-++++.+|..+....-.. .+....+
T Consensus 529 ~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~ 608 (717)
T KOG1048|consen 529 LSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAI 608 (717)
T ss_pred HhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchH
Confidence 45567777888888877765433211 13456788888888888888888888888876544322 2335667
Q ss_pred HHHHHhhcCC------CcHHHHHHHHHHHHHH
Q 008806 400 PAIVELAEDR------HWRVRLAIIEYIPLLA 425 (553)
Q Consensus 400 ~~l~~~~~d~------~~~vR~~~~~~l~~i~ 425 (553)
|.|.+.+.+. +|++-.+++..+..|.
T Consensus 609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred HHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 7777766442 4666677777777666
No 276
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=86.29 E-value=17 Score=29.89 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=59.9
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhH----HHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhChh
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~----~~l~~~l~~~l~-D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
...+..+..-+.++|..+...++..+..+++.+|..+.. ..++..+.+++. .....||..++..+......++.+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 455666777778899999999999999999999886532 456777777766 467789999999999999888643
No 277
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=86.12 E-value=17 Score=29.58 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=59.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhH----HHHHHHHHHHccC---CchHHHHHHHHHHHHHHHHhC
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD---KVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~----~~l~~~l~~~l~D---~~~~VR~~a~~~l~~l~~~~~ 468 (553)
...+..|..-+++++..+...++..+..+.+.+|..+.. ..++..+.+++.. ....||..+++.+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 556777777788899999999999999999999885432 2455556677664 477899999999999999887
Q ss_pred hh
Q 008806 469 PE 470 (553)
Q Consensus 469 ~~ 470 (553)
.+
T Consensus 116 ~~ 117 (133)
T cd03561 116 GH 117 (133)
T ss_pred CC
Confidence 53
No 278
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.07 E-value=18 Score=29.87 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=51.6
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHHHH
Q 008806 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVE 404 (553)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l~~ 404 (553)
..++|..-..++..+..= ..| ....+..+.+-++..++.|...|+..|..+++..|.... ...++..|..
T Consensus 14 ~~~dw~~il~icD~I~~~--~~~----~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~k 87 (144)
T cd03568 14 TSENWGLILDVCDKVKSD--ENG----AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKK 87 (144)
T ss_pred CCcCHHHHHHHHHHHhcC--Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence 445666554444444321 111 123445555666666777777777777777776665432 2445555555
Q ss_pred hhcC-CCcHHHHHHHHHHHHHHhhhC
Q 008806 405 LAED-RHWRVRLAIIEYIPLLASQLG 429 (553)
Q Consensus 405 ~~~d-~~~~vR~~~~~~l~~i~~~~~ 429 (553)
++.+ .+..|+..++..+...+..+.
T Consensus 88 l~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 88 LINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 5554 455566666666655555444
No 279
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.96 E-value=9.9 Score=32.01 Aligned_cols=128 Identities=21% Similarity=0.204 Sum_probs=73.0
Q ss_pred CcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhh---chhhH-HhhHHHHHHHhh
Q 008806 331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDLL-SQSLLPAIVELA 406 (553)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~---~~~~~-~~~ll~~l~~~~ 406 (553)
....+|..+.-++..+.+..+. .+.+.+...+...+.+...+-...++.++..+.... |.+.+ .+.+++.+..+.
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~-~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAARE-EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 4455677777777666533332 345556666666665544444555555555554322 22222 356677777776
Q ss_pred c--CCCcHHHHHHHHHHHHHHhhhCh----hhhHHHHHHHHHHHcc-CCchH-HHHHHHHHHHH
Q 008806 407 E--DRHWRVRLAIIEYIPLLASQLGV----GFFDDKLGALCMQWLQ-DKVYS-IRDAAANNLKR 462 (553)
Q Consensus 407 ~--d~~~~vR~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~-D~~~~-VR~~a~~~l~~ 462 (553)
. .++..+..++++++.. .+.. ..+.++.++.+....+ +++.. +|..|+-+|.+
T Consensus 96 ~~~~~~~~~~~~~lell~a---Ac~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSA---ACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHH---HTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 6 5667777777777753 3333 2455667777777774 44444 77777666543
No 280
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=85.75 E-value=36 Score=35.51 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHhhccCCcch---hhhchHHHHH-HhcCCCCHHHHHHHHHHHHHHHH
Q 008806 217 SVRLLAVEGCAALGKLLEPQD---CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCE 270 (553)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~~---~~~~ll~~l~-~l~~d~~~~vR~~~~~~l~~l~~ 270 (553)
.+|.+++..+..+....+... ....+.-.+. +.+-|++-.+|+++..++-++..
T Consensus 359 ~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iG 416 (993)
T COG5234 359 SIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIG 416 (993)
T ss_pred eeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhc
Confidence 566666665555554422211 1112333333 36668888888888777666543
No 281
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.23 E-value=19 Score=29.46 Aligned_cols=74 Identities=8% Similarity=0.036 Sum_probs=58.7
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhh----HHHHHHHHHHHccC------CchHHHHHHHHHHHHHHH
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQD------KVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~----~~~l~~~l~~~l~D------~~~~VR~~a~~~l~~l~~ 465 (553)
...+..+..-++++|..+...++..+..+++.+|..+. ...++..+.+++.+ ....||..++..+.....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44556677777899999999999999999999998653 24566777777753 568999999999999998
Q ss_pred HhCh
Q 008806 466 EFGP 469 (553)
Q Consensus 466 ~~~~ 469 (553)
.++.
T Consensus 117 ~f~~ 120 (139)
T cd03567 117 ELPH 120 (139)
T ss_pred Hhcc
Confidence 8863
No 282
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.19 E-value=19 Score=29.30 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=53.5
Q ss_pred hhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHH-----HHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhhhC
Q 008806 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQD---DMPMVRRSAASNLGKFAATVE 195 (553)
Q Consensus 124 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~l~~ll~d---~~~~Vr~~a~~~l~~l~~~~~ 195 (553)
...+..+.+-+.++++.+...|+.++..+..++|.... .+++..+.+++.. .++.||..+...+..+...++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34566676667777888888888888888888877522 2444456676654 477888888888888888776
Q ss_pred ch
Q 008806 196 PA 197 (553)
Q Consensus 196 ~~ 197 (553)
.+
T Consensus 116 ~~ 117 (133)
T cd03561 116 GH 117 (133)
T ss_pred CC
Confidence 53
No 283
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=84.99 E-value=13 Score=30.16 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=51.1
Q ss_pred hhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-----HHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHhhhCc
Q 008806 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDM--PMVRRSAASNLGKFAATVEP 196 (553)
Q Consensus 124 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-----~~~~l~~~l~~ll~d~~--~~Vr~~a~~~l~~l~~~~~~ 196 (553)
...+..+.+-+.++++.+...++.++..+..++|.. ....++..+..++.++. +.||+.+...+...+..+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 345566666666777778888888888888887765 22456667777766543 33888888888888877754
Q ss_pred h
Q 008806 197 A 197 (553)
Q Consensus 197 ~ 197 (553)
+
T Consensus 116 ~ 116 (133)
T smart00288 116 D 116 (133)
T ss_pred C
Confidence 3
No 284
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=84.08 E-value=46 Score=32.88 Aligned_cols=134 Identities=19% Similarity=0.157 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcC-CCcchhhhHhhhhHhhcCCCChH----HHHHHHHHHHHhcC
Q 008806 99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQ 173 (553)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~ll~ 173 (553)
+..||..+...|.++...-..+.+...-+..+..+.+. +.++.....+.+++.+.++-..- .....+..+.--|.
T Consensus 195 et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~r 274 (832)
T KOG3678|consen 195 ETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCR 274 (832)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecc
Confidence 45789888888877764433333333334444444433 33455556677777777664332 11223344444456
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCc----hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhcc
Q 008806 174 DDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (553)
Q Consensus 174 d~~~~Vr~~a~~~l~~l~~~~~~----~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~ 232 (553)
-.+|.+-+.++-+|++.+-+-+. ..+...+-.++.-+....++-.|..|+-+...++..
T Consensus 275 Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 275 RTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred cCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 66788888888899987755442 223334555555556666777888888777777653
No 285
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=83.82 E-value=4.2 Score=34.38 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcch--hhhchHHHHHHh
Q 008806 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--CVAHILPVIVNF 249 (553)
Q Consensus 174 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~l 249 (553)
|+--++|++|.+++..+...+....-...+++.+...++| +.++|..+...+..++...+... ..+.+.+.+...
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~ 114 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKT 114 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 5567899999999999988766555556677778888888 89999999999988876644321 133344444443
No 286
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.65 E-value=23 Score=29.08 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=57.7
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhH----HHHHHHHHHHccCC-c-hH--HHHHHHHHHHHHHHHh
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQDK-V-YS--IRDAAANNLKRLAEEF 467 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~----~~l~~~l~~~l~D~-~-~~--VR~~a~~~l~~l~~~~ 467 (553)
...+..|..-+.+++..+...++..+..+++.+|..+.. ..++..+..++.++ . .. ||..++..+......+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 566777888888899999999999999999999876533 34666676765542 2 22 9999999999999988
Q ss_pred Ch
Q 008806 468 GP 469 (553)
Q Consensus 468 ~~ 469 (553)
+.
T Consensus 121 ~~ 122 (140)
T PF00790_consen 121 KS 122 (140)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 287
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=83.50 E-value=93 Score=35.95 Aligned_cols=71 Identities=10% Similarity=0.146 Sum_probs=49.2
Q ss_pred HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh---HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhh
Q 008806 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (553)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~ 388 (553)
...+..+.+.+++.+-.+-..+|..|..|......+. +..-.++.+.+++...+..+-..++.+|..+...
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 3455666667777777777777777777765443321 2344568888999888888888888888887654
No 288
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=83.49 E-value=19 Score=27.94 Aligned_cols=60 Identities=8% Similarity=0.099 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhh
Q 008806 372 PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (553)
Q Consensus 372 ~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~ 433 (553)
..-|..++.+++.+++..|... ...+++.+|...++ ....|..++.+...+...++.+..
T Consensus 29 ~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l 90 (107)
T smart00802 29 YNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEEL 90 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHH
Confidence 3458888888888888666432 22445555555554 335888888888888888776543
No 289
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=83.46 E-value=43 Score=32.08 Aligned_cols=76 Identities=7% Similarity=-0.057 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhhhCc------hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhh
Q 008806 160 LKTELRSIYTQLCQD---DMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230 (553)
Q Consensus 160 ~~~~l~~~l~~ll~d---~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~ 230 (553)
..+.++.....+..+ .-|+.|..-.+-+..+.....+ ......++..+...+++.+.+|...++.++..+.
T Consensus 114 I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 114 ILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 334445555555543 3689999988888888876532 3334566777777889999999999999998887
Q ss_pred ccCCc
Q 008806 231 KLLEP 235 (553)
Q Consensus 231 ~~~~~ 235 (553)
..+..
T Consensus 194 ~~~~~ 198 (319)
T PF08767_consen 194 NNVSK 198 (319)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76544
No 290
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=83.44 E-value=61 Score=33.78 Aligned_cols=51 Identities=12% Similarity=0.168 Sum_probs=34.1
Q ss_pred HHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhh
Q 008806 339 LASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (553)
Q Consensus 339 ~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 389 (553)
+..++..+...+........++.++....-..++.|++.|..+|..++...
T Consensus 452 f~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 452 FRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDK 502 (552)
T ss_pred HHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcC
Confidence 333444444444444345667777777777778889999988888888755
No 291
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=82.89 E-value=62 Score=33.48 Aligned_cols=149 Identities=11% Similarity=0.029 Sum_probs=94.6
Q ss_pred HHHHHHhccCCc--HHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh--------CCCChHHHHHHHHHHHHhhhhhc
Q 008806 321 LPCVKELSSDSS--QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIG 390 (553)
Q Consensus 321 ~~~l~~l~~d~~--~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l--------~d~~~~VR~~a~~~l~~~~~~~~ 390 (553)
+..+...+.++. |.--...++++|.++..+....-...++..+..+| +|...-|.......+|..-..+.
T Consensus 483 i~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLk 562 (1053)
T COG5101 483 IGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLK 562 (1053)
T ss_pred HHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHH
Confidence 333434444554 56677889999999887776544444444444433 34444455555555555444444
Q ss_pred hhh-HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh----------hhHHHHHHHHHHHccCCchHHHHHHHHH
Q 008806 391 IDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----------FFDDKLGALCMQWLQDKVYSIRDAAANN 459 (553)
Q Consensus 391 ~~~-~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~----------~~~~~l~~~l~~~l~D~~~~VR~~a~~~ 459 (553)
..+ +...+...|.++....+..++..||..+-.++..+... .|..+++..+-+...|-.+.-....-++
T Consensus 563 ahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeA 642 (1053)
T COG5101 563 AHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEA 642 (1053)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHH
Confidence 343 34677788888888889999999999999998876443 3444444444455566666667777778
Q ss_pred HHHHHHHhCh
Q 008806 460 LKRLAEEFGP 469 (553)
Q Consensus 460 l~~l~~~~~~ 469 (553)
.|-+++....
T Consensus 643 cg~vIse~p~ 652 (1053)
T COG5101 643 CGMVISEVPK 652 (1053)
T ss_pred HhHHHhccch
Confidence 8877766544
No 292
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=82.41 E-value=42 Score=34.40 Aligned_cols=141 Identities=18% Similarity=0.126 Sum_probs=87.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcch----hhh
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVA 240 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~ 240 (553)
-..+..-..|-++.+|..+...++..+..++.-...-..+...--.+.|.+..||....+.+..+....+... +.+
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3445555678899999999999999888776422222222233345789999999999999999988766543 222
Q ss_pred chHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 008806 241 HILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (553)
Q Consensus 241 ~ll~~l~~-l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~ 309 (553)
.+...+.+ +..|.+- ||....+.+..+... |.- ...-+.....++-|..++-|....+.+..+++
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~l-g~L--~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRIL-GVL--SSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHHh-ccc--chhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 33333443 4456666 999988888776542 211 12234444555656665544444444444443
No 293
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=81.97 E-value=22 Score=27.59 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhH
Q 008806 410 HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (553)
Q Consensus 410 ~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~ 471 (553)
...-|..++.+++.+.+..|.. .+.+++.-.+...+. .++.|..+++++..++..++++.
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 4456889999999999876643 233444445555554 44799999999999999998653
No 294
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=81.78 E-value=16 Score=33.65 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=70.1
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCC------cHHHHHHHHHHHHhhhhhhC--HHhHHHhHH
Q 008806 289 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS------SQHVRSALASVIMGMAPLLG--KDATIEQLL 360 (553)
Q Consensus 289 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~------~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~ 360 (553)
+.+.+...|.+|+.+|.. +.-...++|.+..++.+. +-.+-..+......+...-. -+....+++
T Consensus 207 ~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm 279 (450)
T COG5095 207 LDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM 279 (450)
T ss_pred HHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence 444556778877776643 222455666666555432 22222223333333222100 011255677
Q ss_pred HHHHHhh------CCC----ChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCC--CcHHHHHHHHHHHHHHh
Q 008806 361 PIFLSLL------KDE----FPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLAS 426 (553)
Q Consensus 361 p~l~~~l------~d~----~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~--~~~vR~~~~~~l~~i~~ 426 (553)
|.++.++ +++ ...+|.-|+..++-++..++... +.+.+...+.+..-|. -+.....++.+++.+.+
T Consensus 280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 7777665 121 24589999999999988887653 2344444444444343 35566777777766654
No 295
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.59 E-value=44 Score=30.88 Aligned_cols=127 Identities=16% Similarity=0.211 Sum_probs=71.9
Q ss_pred hHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH
Q 008806 281 LVPAYVRLLRDNE-----AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 355 (553)
Q Consensus 281 llp~l~~ll~d~~-----~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (553)
.+|.+...+.+++ +.++ .++..|..+++..+.... ..+ +..+.+........-....+..+.+.+.++.
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~L-a~i---l~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~- 185 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNL-ARI---LSSYAKGRFRDKDDFLSQVVSYLREAFFPDH- 185 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccH-HHH---HHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-
Confidence 3455555555444 3444 455778887765443332 222 2333333332222333344445555554443
Q ss_pred HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh-HHhhHHHHHHHhhcCCCcHH
Q 008806 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIVELAEDRHWRV 413 (553)
Q Consensus 356 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~-~~~~ll~~l~~~~~d~~~~v 413 (553)
...++-.+..++.++...+|..++..|..+........ ....++..+.++++.+.|.-
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~e 244 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWME 244 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHH
Confidence 23456678888888889999999999998887654321 22445555667777766653
No 296
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.12 E-value=67 Score=32.68 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCC--CC
Q 008806 294 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EF 371 (553)
Q Consensus 294 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d--~~ 371 (553)
.+-|......+..+.-.+|.+.....+.-.+.. ....|..-++++..+..+++.+.++ .+.++|-+.+.+.. ..
T Consensus 366 ~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q 441 (559)
T KOG2081|consen 366 FEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQ 441 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccc
Confidence 467888888888888888887655544444333 4678999999999999999887765 34567766666532 23
Q ss_pred hHHHHHHHHHHHHhhhhhchhhH-HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh
Q 008806 372 PDVRLNIISKLDQVNQVIGIDLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (553)
Q Consensus 372 ~~VR~~a~~~l~~~~~~~~~~~~-~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~ 428 (553)
..+|..++..+|.+.+.+..+.. .+.++..+........ .-.++..++..+...+
T Consensus 442 ~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 442 APLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC 497 (559)
T ss_pred hhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Confidence 34999999999999887754321 1333444444444443 4555666666665544
No 297
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=80.95 E-value=52 Score=31.24 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHHhhccCCcchhhhc---hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc---hHHHHHHhc
Q 008806 216 DSVRLLAVEGCAALGKLLEPQDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD---LVPAYVRLL 289 (553)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~---ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~---llp~l~~ll 289 (553)
..|...|+++...+-+.++.+..... ..|-+..+....+-.||......+.+..-.+|. ..... ++..+...+
T Consensus 69 sGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGL 147 (307)
T PF04118_consen 69 SGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGL 147 (307)
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccc
Confidence 46788888888888888887654433 345555556666677898888887777655554 22222 333334446
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhC------HHhH--------
Q 008806 290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG------KDAT-------- 355 (553)
Q Consensus 290 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~------~~~~-------- 355 (553)
.|+..++-..+..-+..+...++.+.|...+.-.+. .++.+|..++..+..-.+... ....
T Consensus 148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (307)
T PF04118_consen 148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPD 222 (307)
T ss_pred ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCC
Confidence 778889999999999999999998876666554444 467788888777665444333 0000
Q ss_pred HHhHHHHHHHhhCCCChHHHHHHHHHHHHhh
Q 008806 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (553)
Q Consensus 356 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~ 386 (553)
..-++..+...++|++.-|++.++..+-.-.
T Consensus 223 ~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 223 PGLLVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred ccHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 2345567777888888888888776655443
No 298
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=80.94 E-value=1.8 Score=24.37 Aligned_cols=29 Identities=34% Similarity=0.299 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 008806 255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291 (553)
Q Consensus 255 ~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d 291 (553)
|.||..++.+|+.+. .+..++.+.+.++|
T Consensus 1 ~~vR~~aa~aLg~~~--------~~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLG--------DEEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcC--------CHhHHHHHHHHhcC
Confidence 457777777777763 23456666666655
No 299
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.69 E-value=75 Score=32.31 Aligned_cols=218 Identities=14% Similarity=0.100 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCCh--hHHHHHHHHHHHhhccCCcch
Q 008806 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQD 237 (553)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~--~vr~~a~~~l~~l~~~~~~~~ 237 (553)
..+..+-.+.+.++.++...+.++.-.+|........+++.+.+.|+ ..+.+. ++-..|.-+++.+--..-..+
T Consensus 447 E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi----~~std~pie~~~~asltLg~vFvGtcngD 522 (881)
T COG5110 447 ERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPI----MFSTDSPIEVVFFASLTLGSVFVGTCNGD 522 (881)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhh----hcCCCCcHHHHHHHHHhhhheEeeccCch
Confidence 45667788888899999999988888888766655556666666664 344444 454555555554432221222
Q ss_pred hhhchHHHHHHh--cCCCCHHHHHHHHHHHHHHH--------------------------------HHhCCCccccchHH
Q 008806 238 CVAHILPVIVNF--SQDKSWRVRYMVANQLYELC--------------------------------EAVGPEPTRMDLVP 283 (553)
Q Consensus 238 ~~~~ll~~l~~l--~~d~~~~vR~~~~~~l~~l~--------------------------------~~~~~~~~~~~llp 283 (553)
....++..+.+- ++.+....|-.+. .|+.+- ...|... ..++.
T Consensus 523 ~ts~ilqtf~Er~~~e~~tqw~RFlaL-gLa~Lf~g~~d~~d~v~eti~aIeg~ls~~~eiLv~~c~Y~GTGd--vl~Iq 599 (881)
T COG5110 523 LTSLILQTFVERGKIESETQWFRFLAL-GLASLFYGRKDQVDDVEETIMAIEGALSKHEEILVKGCQYVGTGD--VLVIQ 599 (881)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHH-HHHHHHccccchhHHHHHHHHHhcchhhhhHHHHHhhceecccCc--HHHHH
Confidence 223333332221 1122222333211 111111 0011100 01222
Q ss_pred HHHHhcC----CC--cHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHH
Q 008806 284 AYVRLLR----DN--EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 357 (553)
Q Consensus 284 ~l~~ll~----d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 357 (553)
-++.... |. +.+.-......|+.-.-.+|.+.-.+.++-.+..++.-.+.++|..+--+.+-+...-+. -
T Consensus 600 ~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQ----m 675 (881)
T COG5110 600 SLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQ----M 675 (881)
T ss_pred HHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcc----h
Confidence 2222111 11 011111122222222223454443455555666666667889999888887777653222 2
Q ss_pred hHHHHHHHhhCCCChHHHHHHHHHHHHhhhh
Q 008806 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (553)
Q Consensus 358 ~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~ 388 (553)
.++..+.....|.+-+|-..++.+++-+...
T Consensus 676 ~vfDtL~r~shd~dl~v~~ntIfamGLiGAG 706 (881)
T COG5110 676 NVFDTLERSSHDGDLNVIINTIFAMGLIGAG 706 (881)
T ss_pred HHHHHHHHhccccchhHHHHHHHHhhccccC
Confidence 3567788888999999999998888877553
No 300
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=79.63 E-value=25 Score=27.60 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=29.5
Q ss_pred HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhH
Q 008806 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 355 (553)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 355 (553)
..++..+.+-+.+++|++...++..+..+.+..|..+.
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~ 73 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFH 73 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHH
Confidence 45666666667778899999999999888888887654
No 301
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=79.14 E-value=29 Score=27.26 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=47.4
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHH----HHHHHHHHH-----c-cCCchHHHHHHHHHHHHH
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD----KLGALCMQW-----L-QDKVYSIRDAAANNLKRL 463 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~----~l~~~l~~~-----l-~D~~~~VR~~a~~~l~~l 463 (553)
..++..|..-+.+++|++..-++..+..+.+.+|..+... .+...+++. . .+....||..+.+.+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 5677777777888899999999999999999998865331 122222221 1 245678998888876654
No 302
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=79.10 E-value=46 Score=29.56 Aligned_cols=131 Identities=14% Similarity=0.033 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCC-CCHHHHHHHHHH-HHHHHhhhCchhhhhhHH
Q 008806 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSAASN-LGKFAATVEPAHLKTDIM 204 (553)
Q Consensus 127 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d-~~~~Vr~~a~~~-l~~l~~~~~~~~~~~~l~ 204 (553)
..++..+.+++..+.|..++.++.......+.+. ++.+...+.+ .+|.+--..+.. +|.+... . +...
T Consensus 48 ~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~--~----~~~~ 117 (208)
T cd07064 48 WELVLELWQQPEREYQYVAIDLLRKYKKFLTPED----LPLLEELITTKSWWDTVDSLAKVVGGILLAD--Y----PEFE 117 (208)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC--C----hhHH
Confidence 3444445555556667777666655544444332 2222233332 244443333322 2333221 1 1223
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 008806 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (553)
Q Consensus 205 p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 271 (553)
+.+.+...+++.-+|.+|+-+.....+... .+.+...+..++.|+..-|+.++...|..++..
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~----~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKEKTD----TDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHccC----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 455555666666666666544333332211 234555566677777777777777777776654
No 303
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=78.97 E-value=94 Score=33.07 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhc
Q 008806 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (553)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (553)
....++..+..+..|+-..|+..+++.+..+...-+. -...++-.+..-+.|++..+-..|...|..+..
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 3456677788888999999999999988887765443 234566667777888888887777777766554
No 304
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=78.80 E-value=6.6 Score=33.27 Aligned_cols=60 Identities=17% Similarity=0.004 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhc
Q 008806 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQM 117 (553)
Q Consensus 57 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~ 117 (553)
.|+--++|+++.+++..+.+.....-....+...+...++| ++.+|..+...+.+++...
T Consensus 37 vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 37 VDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp EEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 34555666666666666655444333333444445555555 5556666666665555443
No 305
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=78.77 E-value=44 Score=29.10 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=49.2
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~ 311 (553)
+..++.+.+++-+.+..+|..+.+.+..+.+. |--. +...+|.++.+..|+++.+|..|...+..+.+..
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 44566666777777788888888877777652 2211 3457888888888888888888888777765543
No 306
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=78.45 E-value=45 Score=29.12 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=47.9
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh
Q 008806 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 283 p~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
+.+..+..+++.-+|.++...+...... +...+.+++.+.....|++..||.++..++..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 7788888888888888777766554443 222466777777788888899999999988888865
No 307
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=78.16 E-value=55 Score=29.93 Aligned_cols=72 Identities=14% Similarity=0.032 Sum_probs=44.8
Q ss_pred chhhcchhHHHhhhcc-chhHHHHHHHHHHHHHHhhcChhhh----hhhHHHHHHHHhcCCCcchhhhHhhhhHhhc
Q 008806 82 EHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDL----VDWYIPLVKRLAAGEWFTARVSACGLFHIAY 153 (553)
Q Consensus 82 ~~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 153 (553)
+..-.+.|++..-.+. +-+..|-.++..++.+.+.-+++.+ ..+++|++.+..+..+.-.|..|.-++..+.
T Consensus 91 ~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 91 HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3445678888654443 4577899999999999886555432 3468888888776666666666666655543
No 308
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=77.92 E-value=30 Score=27.51 Aligned_cols=71 Identities=10% Similarity=0.066 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHhc-CCCcchhhhHhhhhHhhcCCC--ChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh
Q 008806 122 LVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSA--PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194 (553)
Q Consensus 122 ~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~--~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~ 194 (553)
....++|.+.+.+. .+..+.|.++..+++.++... .++..+.++..+.+....... .+.+..++..++..-
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 34567788877776 666788888888888877654 344555555555554443333 455666777777554
No 309
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=77.81 E-value=33 Score=27.23 Aligned_cols=72 Identities=19% Similarity=0.149 Sum_probs=38.7
Q ss_pred HHHhHHHHHHHhcc-CCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChH-HHHHHHHHHHHhhhhh
Q 008806 316 AIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVI 389 (553)
Q Consensus 316 ~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~-VR~~a~~~l~~~~~~~ 389 (553)
+...++|.+...+. ......|.++...++.++....-. .+.+..++...+++.... ....++.++..+++..
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~--~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS--DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 34667777777776 666777777777777777543321 111222222333332222 2355666666666554
No 310
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=77.66 E-value=24 Score=26.09 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhhhCchh--hhhhHHHHHHHhhhCCChhHHHHHHHHHH
Q 008806 160 LKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCA 227 (553)
Q Consensus 160 ~~~~l~~~l~~l-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~l~p~l~~~~~d~~~~vr~~a~~~l~ 227 (553)
...+++..+..+ ...++..||.....++.++....+... -+..++..+.....|++..+-..|.+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 455666666665 455688999999999999888766421 24567777777777777777777776654
No 311
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.41 E-value=87 Score=31.85 Aligned_cols=83 Identities=10% Similarity=-0.060 Sum_probs=56.1
Q ss_pred HHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHH
Q 008806 381 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNL 460 (553)
Q Consensus 381 ~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l 460 (553)
.|+.-.-.+|.+.-.+.++..+.....-.+..+|...--+++-+... .-.-.++..+.+.+.|.+.+|-..++-++
T Consensus 625 ~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~S----nPQm~vfDtL~r~shd~dl~v~~ntIfam 700 (881)
T COG5110 625 LLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPS----NPQMNVFDTLERSSHDGDLNVIINTIFAM 700 (881)
T ss_pred HhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCC----CcchHHHHHHHHhccccchhHHHHHHHHh
Confidence 34433444566655566666666666667788888877777655422 11235677888889999999999999888
Q ss_pred HHHHHHh
Q 008806 461 KRLAEEF 467 (553)
Q Consensus 461 ~~l~~~~ 467 (553)
|-+....
T Consensus 701 GLiGAGT 707 (881)
T COG5110 701 GLIGAGT 707 (881)
T ss_pred hccccCc
Confidence 8776543
No 312
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=76.82 E-value=40 Score=27.65 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=66.5
Q ss_pred hccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHH
Q 008806 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI 402 (553)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l 402 (553)
...+++|..-..++..+..= .......+..+.+-++..++.+...|+..+..+++..|.... ...++..+
T Consensus 17 ~~~~~Dw~~~l~icD~i~~~------~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l 90 (140)
T PF00790_consen 17 SLPSPDWSLILEICDLINSS------PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDEL 90 (140)
T ss_dssp TSSS--HHHHHHHHHHHHTS------TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcC------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHH
Confidence 34556775544444433322 111344567788888889999999999999999998876543 24577778
Q ss_pred HHhhcCCC-cH---HHHHHHHHHHHHHhhhChhh
Q 008806 403 VELAEDRH-WR---VRLAIIEYIPLLASQLGVGF 432 (553)
Q Consensus 403 ~~~~~d~~-~~---vR~~~~~~l~~i~~~~~~~~ 432 (553)
..++.++. .. ||..++..+...+..++...
T Consensus 91 ~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~ 124 (140)
T PF00790_consen 91 VKLIKSKKTDPETPVKEKILELLQEWAEAFKSDP 124 (140)
T ss_dssp HHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTST
T ss_pred HHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCC
Confidence 87766542 22 89999999999998885443
No 313
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=76.14 E-value=4.9 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.123 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 008806 164 LRSIYTQLCQDDMPMVRRSAASNLGKFA 191 (553)
Q Consensus 164 l~~~l~~ll~d~~~~Vr~~a~~~l~~l~ 191 (553)
.++.+.++++++++.+++.++.+|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4666677777778888888888887765
No 314
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=75.33 E-value=5.4 Score=24.12 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=17.8
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 437 LGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 437 l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
.+|.+..++..++..++..++.++..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555556666666677777777766654
No 315
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=74.54 E-value=42 Score=26.75 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=25.6
Q ss_pred HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH
Q 008806 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353 (553)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (553)
..+...+.+-+++++++|+..++..+-.++...+..
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence 466667777777777888888888888777654433
No 316
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=72.82 E-value=41 Score=32.39 Aligned_cols=81 Identities=7% Similarity=0.023 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHH-----HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhhCc
Q 008806 123 VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP 196 (553)
Q Consensus 123 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~l~~ll~-d~~~~Vr~~a~~~l~~l~~~~~~ 196 (553)
....+..+.+-+++.++.|-.-++.+++.++.+++...+ .++...+..++. ..++.|++.+...+..+++.+..
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 345677777778888899999999999999998887633 356667777777 56788998888888888876655
Q ss_pred hhhhhhH
Q 008806 197 AHLKTDI 203 (553)
Q Consensus 197 ~~~~~~l 203 (553)
+.-...+
T Consensus 123 Dp~lsLi 129 (462)
T KOG2199|consen 123 DPSLSLI 129 (462)
T ss_pred CcchhHH
Confidence 4433333
No 317
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=71.72 E-value=4.3 Score=22.26 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhhh
Q 008806 374 VRLNIISKLDQVNQ 387 (553)
Q Consensus 374 VR~~a~~~l~~~~~ 387 (553)
||..++.+|+.+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 45555555555544
No 318
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=71.06 E-value=83 Score=28.67 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=36.7
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHh----hCHH-------HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhC
Q 008806 288 LLRDNEAEVRIAAAGKVTKFCRI----LNPE-------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 351 (553)
Q Consensus 288 ll~d~~~~vr~~a~~~l~~~~~~----~~~~-------~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~ 351 (553)
+++|+++.|.+.++.+...+... +..+ .....+...+.....+.++.||..+++.+..+.-...
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs 75 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQS 75 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence 35566666666666655544332 1111 1123444555566777788899888888887765543
No 319
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=70.53 E-value=78 Score=28.12 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=76.8
Q ss_pred HHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCC-CCHHHHHHHHHHH-HHHHHHhCCCccccc
Q 008806 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQL-YELCEAVGPEPTRMD 280 (553)
Q Consensus 203 l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d-~~~~vR~~~~~~l-~~l~~~~~~~~~~~~ 280 (553)
...+...+..++..+.|..|+..+...-...+.+ -++.+...+.+ .+|.+-...+..+ |.+... .+.
T Consensus 47 ~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~~ 115 (208)
T cd07064 47 LWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD------YPE 115 (208)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------Chh
Confidence 3344445667777788888887776644333332 23444444444 3566555444333 333221 234
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh
Q 008806 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 281 llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
+.+.+.++..+++.=.|.+|+-+.-.+.+... .+.+...+...+.|+..-|+.++..+|-.+++.
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~----~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEKTD----TDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHccC----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 46777888888876666666554333333222 234455566677888888999998888888764
No 320
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=69.81 E-value=1.6e+02 Score=31.43 Aligned_cols=330 Identities=14% Similarity=0.121 Sum_probs=159.7
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhh------hhhhhhhhcCCCcHHHHHHHHHHhhccccccCC-c
Q 008806 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRK------ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG-V 81 (553)
Q Consensus 9 ~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~------~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~-~ 81 (553)
..+.+.+..|.+.++.+.-.|.--+..++. +.++.+. .+..++.-+...+.+|++.++-+|.+++-.-.. +
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcf--gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCF--GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHh--hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 457788889999999888777777766653 3333222 222222225678999999999999988643222 1
Q ss_pred c-----hhhcchhHHHhhhccchhHHHHHHHHHHHHHHhh--cChhhhhhhHHHHHHHHhc-------CCC-------cc
Q 008806 82 E-----HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ--MRESDLVDWYIPLVKRLAA-------GEW-------FT 140 (553)
Q Consensus 82 ~-----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~--~~~~~~~~~~l~~l~~~~~-------~~~-------~~ 140 (553)
. ..+-+..++..+-...|.++|+...-.|.++.+. +.. .+...-++.+....- +++ ..
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~-~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKM-LIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHH-HHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence 1 1122444455555556888998888777777655 111 111112222222111 111 11
Q ss_pred hhhhHhhhhHhhcCCCChH---------HHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHH
Q 008806 141 ARVSACGLFHIAYPSAPDI---------LKTELRSIYTQLCQD---DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE 208 (553)
Q Consensus 141 ~r~~~~~~l~~l~~~~~~~---------~~~~l~~~l~~ll~d---~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~ 208 (553)
+-..+..++..+...-.+. .++.++-.+..+.+. ++..|.. +.-.+.++.-.+.. ++.|...
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VEN-cvCilRNLSYrl~~-----Evp~~~~ 463 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVEN-CVCILRNLSYRLEA-----EVPPKYR 463 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHH-HHHHHhhcCchhhh-----hcCHhhh
Confidence 2222233333332211110 234455555544332 2334433 22223333222221 1222221
Q ss_pred HhhhCCC--hhHHH--HHHHHHHHhhcc---------CCcc---------hhhhchHHH-HHHhcCCCCHHHHHHHHHHH
Q 008806 209 DLTQDDQ--DSVRL--LAVEGCAALGKL---------LEPQ---------DCVAHILPV-IVNFSQDKSWRVRYMVANQL 265 (553)
Q Consensus 209 ~~~~d~~--~~vr~--~a~~~l~~l~~~---------~~~~---------~~~~~ll~~-l~~l~~d~~~~vR~~~~~~l 265 (553)
..+.+.. ..+.- ....+++.-.+. +++. .+.+.++.. +.-+.......+-++++-+|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL 543 (717)
T ss_pred hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence 1111100 00000 111111111111 0110 112223322 22233345566777777777
Q ss_pred HHHHHHhCCC--------ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-HHHHhHHHHHHHhccC------
Q 008806 266 YELCEAVGPE--------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSD------ 330 (553)
Q Consensus 266 ~~l~~~~~~~--------~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~l~~d------ 330 (553)
.++....+.. +-.+..+|.+++++...+..|-.+++..|..+....... .+....+|.+...+.+
T Consensus 544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~ 623 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTS 623 (717)
T ss_pred hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcC
Confidence 7776543321 123567888999998888888888888888877654332 2334455666555543
Q ss_pred CcHHHHHHHHHHHHhhh
Q 008806 331 SSQHVRSALASVIMGMA 347 (553)
Q Consensus 331 ~~~~vr~~~~~~l~~l~ 347 (553)
.+|.+-.+++..+..+.
T Consensus 624 ~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 624 LSEDTVRAVCHTLNNIV 640 (717)
T ss_pred chHHHHHHHHHhHHHHH
Confidence 23566666666666665
No 321
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=69.55 E-value=43 Score=24.75 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=35.9
Q ss_pred HhHHHHHHHhh-CCCChHHHHHHHHHHHHhhhhhchhhHH--hhHHHHHHHhhcCCCcHHHHHHHHHH
Q 008806 357 EQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYI 421 (553)
Q Consensus 357 ~~l~p~l~~~l-~d~~~~VR~~a~~~l~~~~~~~~~~~~~--~~ll~~l~~~~~d~~~~vR~~~~~~l 421 (553)
..++..+...+ +..+.+||+..+.++..++..-|...-. +.++..+.....+.+..+-..|.+++
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 33444444443 4456778888888888887755533211 44555555555555555444444443
No 322
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=69.26 E-value=36 Score=34.35 Aligned_cols=106 Identities=8% Similarity=-0.041 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCCcchhhhHhh-hhHhhcCC--CChH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhh
Q 008806 126 YIPLVKRLAAGEWFTARVSACG-LFHIAYPS--APDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT 201 (553)
Q Consensus 126 ~l~~l~~~~~~~~~~~r~~~~~-~l~~l~~~--~~~~-~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 201 (553)
+.+.+.+++++++..+.-.+.. ++..+.+. ++.. ....++..+.+++..++...|....+.+..+.-...+....+
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence 4455555556654433333222 22222222 1222 556677777777777777777777777776665554432211
Q ss_pred ----hHHHHHHHhhhCCChhHHHHHHHHHHHhhc
Q 008806 202 ----DIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (553)
Q Consensus 202 ----~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (553)
.=...+..+.+|+++.|...+++.+..+.-
T Consensus 512 ~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 512 FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 123345566778888888877777777654
No 323
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=69.21 E-value=63 Score=26.57 Aligned_cols=83 Identities=7% Similarity=0.098 Sum_probs=52.1
Q ss_pred HHHHHHHHhc-CCCcchhhhHhhhhHhhcCCCChHHH-----HHHHHH-HHHhcCC---CCHHHHHHHHHHHHHHHhhhC
Q 008806 126 YIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDILK-----TELRSI-YTQLCQD---DMPMVRRSAASNLGKFAATVE 195 (553)
Q Consensus 126 ~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~-l~~ll~d---~~~~Vr~~a~~~l~~l~~~~~ 195 (553)
.+..+.+-+. ++++.+...++.++..++.++|.... .+++.. +.+++.+ .+..|+..++..+..++..++
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 3444444333 45666677778888888888887622 355554 6666653 345889988888888888776
Q ss_pred chhhhhhHHHHHH
Q 008806 196 PAHLKTDIMSIFE 208 (553)
Q Consensus 196 ~~~~~~~l~p~l~ 208 (553)
.+.-...+-..+.
T Consensus 119 ~~~~l~~i~~~y~ 131 (141)
T cd03565 119 GSPDLTGVVEVYE 131 (141)
T ss_pred CCccchHHHHHHH
Confidence 5443344444333
No 324
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=67.84 E-value=25 Score=25.03 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhh-hchhhHH-hhHHHHHHHhhc-CCCcHHHHHHHHHHHHHHhh
Q 008806 376 LNIISKLDQVNQV-IGIDLLS-QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQ 427 (553)
Q Consensus 376 ~~a~~~l~~~~~~-~~~~~~~-~~ll~~l~~~~~-d~~~~vR~~~~~~l~~i~~~ 427 (553)
++++.+++.++.. .|.+.+. ..+++.+.+++. ++.+.+|.++..+++-++..
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4555666666543 3444333 356666666654 45567777777777766644
No 325
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=67.36 E-value=1.4e+02 Score=29.78 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=81.1
Q ss_pred HHHHHHHhcCccH--HHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh--cCCCcHHHHHHHHHHhhccccccCCc---ch
Q 008806 11 IAVLIDELKNDDI--QLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGGV---EH 83 (553)
Q Consensus 11 i~~ll~~L~~~d~--~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~--~~d~~~~vr~~~~~~l~~l~~~~~~~---~~ 83 (553)
++.|+.-+.+++. .+|..|.+.|.++......+.....=+..+.+ -....++..+..+..++.+.++.... -.
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5566666776655 56999999999886554444433222444444 22356778888888888887653321 01
Q ss_pred hhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChh----hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcC
Q 008806 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (553)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~ 154 (553)
....+.-+...+...++.+-+.+.-+|++++-+-... .++..+-..+.-+..+.+.-.|+.+|-....++.
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 1112222223344445555555666777776543332 2223333444444555566778887776666654
No 326
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=66.41 E-value=1.9e+02 Score=30.99 Aligned_cols=223 Identities=14% Similarity=0.142 Sum_probs=117.6
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 319 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (553)
..++..|..+..|+-..|+..+..++..+...-+.+ ...++-.+++-+.|++..+-..|...|..+....+.- ...
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM--K~V 378 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM--KIV 378 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc--eee
Confidence 346677778888999999999888888877553322 2358888899999998888877877777766543321 123
Q ss_pred HHHHHHHhccCC--cHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC--------C------------------CC
Q 008806 320 ILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK--------D------------------EF 371 (553)
Q Consensus 320 l~~~l~~l~~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~--------d------------------~~ 371 (553)
++..+..++--+ +.+...-++..|.++.-.-........++.+++.+++ | ..
T Consensus 379 vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k~ 458 (988)
T KOG2038|consen 379 VIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDKK 458 (988)
T ss_pred hHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhcccccccchh
Confidence 334444443222 2333333444444443222222233334443333321 1 00
Q ss_pred hHHHHHHH-----HHHHHhhhhh---------chhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHH
Q 008806 372 PDVRLNII-----SKLDQVNQVI---------GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (553)
Q Consensus 372 ~~VR~~a~-----~~l~~~~~~~---------~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l 437 (553)
.+|+..+. +.|..+...+ +.+.+ ..-++.|..+....|+.+-..++..|-.+... .+.+..+.
T Consensus 459 e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~-~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~--~~~vSDRy 535 (988)
T KOG2038|consen 459 EEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKL-EEQMKTLFKLTHSSNFNTSVQALMLLFQVSKK--NDYVSDRY 535 (988)
T ss_pred hhhcccchhhhhHHHHHHHHhcccccCCcccCchHHH-HHHhHHHHHHHhhcccchhHHHHHHHHHHHHh--hhhhHHHH
Confidence 11211111 1222222211 11222 45577788888888888887777777666532 23334445
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHhCh
Q 008806 438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 438 ~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
...|..-|-||..---.....-|+-+.+.+..
T Consensus 536 Y~aLY~kLLdP~l~~sSKq~m~LnLlykslK~ 567 (988)
T KOG2038|consen 536 YRALYRKLLDPRLMNSSKQAMFLNLLYKSLKE 567 (988)
T ss_pred HHHHHHHhcCcccCchHHHHHHHHHHHHHHHh
Confidence 55565555566322222333344445554443
No 327
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=66.39 E-value=65 Score=25.67 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhC
Q 008806 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE 195 (553)
Q Consensus 159 ~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~ 195 (553)
....++...+.+-++++++.|+..+++.|..++..-+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 3456778888888888888888888888887776543
No 328
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=65.70 E-value=1.4e+02 Score=29.34 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=48.7
Q ss_pred hHHHHHHHhhcCCC-cHHHHHHHHHHHHHHhhhChhh-hHHH--HHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 397 SLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF-FDDK--LGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 397 ~ll~~l~~~~~d~~-~~vR~~~~~~l~~i~~~~~~~~-~~~~--l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
+++..|..+++.++ +.+-.-|+.=++......+... ...+ --..++.+++.++++||..|+.++-.++.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 56667777766544 6666677777888777654431 1111 34577899999999999999999887764
No 329
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=65.09 E-value=74 Score=25.83 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=42.6
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHHHHhhcCCC--cHHHHHHHHHHHHHHhhhC
Q 008806 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLG 429 (553)
Q Consensus 359 l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l~~~~~d~~--~~vR~~~~~~l~~i~~~~~ 429 (553)
.+..+.+-++.+++.+...|+..+..+++..|.... ...++..|..++.++. ..||..++..+...+..+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 455566666777777777777777777777665432 2345555555554432 1266666666666665553
No 330
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=64.40 E-value=2.2e+02 Score=31.09 Aligned_cols=136 Identities=9% Similarity=0.018 Sum_probs=73.3
Q ss_pred CcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhh---cChhhhhhh----HHHHHH
Q 008806 59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ---MRESDLVDW----YIPLVK 131 (553)
Q Consensus 59 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~---~~~~~~~~~----~l~~l~ 131 (553)
.++.+|......+..+...-. -.....++|-+..++-++++.+|..|...+..+... +..+++... +...+.
T Consensus 94 ~~~~l~~~F~~~f~~~~~~~~-~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~ 172 (727)
T PF12726_consen 94 DDEELRELFDAIFSSLQSKKP-LKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLY 172 (727)
T ss_pred CcHHHHHHHHHHHHHHhccCC-ccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHH
Confidence 344555554444444433111 111256777777777788999999999999888764 444444332 333333
Q ss_pred HHhcCCCc--chhhhHhhhhHhhcCCCChHHH---------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc
Q 008806 132 RLAAGEWF--TARVSACGLFHIAYPSAPDILK---------TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 196 (553)
Q Consensus 132 ~~~~~~~~--~~r~~~~~~l~~l~~~~~~~~~---------~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~ 196 (553)
.. +...+ ..-..--..+..+...++++.. ..+...+...+.+.....-...++++..+.+..|.
T Consensus 173 ~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~ 247 (727)
T PF12726_consen 173 RI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGS 247 (727)
T ss_pred Hh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHH
Confidence 33 22111 1111123344455555555511 11445555556655344456677888888887765
No 331
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.79 E-value=3e+02 Score=32.33 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=42.2
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH--HHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH
Q 008806 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 353 (553)
Q Consensus 281 llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (553)
+..-.+.-..|+....|..|+..+..+.+.+|..+ ..+..+|.+.++++|.+..|-..+...+..+-..+|..
T Consensus 1542 l~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1542 LNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchh
Confidence 44444444455555666666666666666665553 24566666666666666666666666555555555554
No 332
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=63.76 E-value=45 Score=27.44 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=44.2
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhh-hhCHHhHHH
Q 008806 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP-LLGKDATIE 357 (553)
Q Consensus 279 ~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~-~~~~~~~~~ 357 (553)
+.+-..+..++.+.+++|++.|++++-.+-. ..+ ..--+.+..++.|. ..|.........-.. .+.+ ...+
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~l-~pY~d~L~~Lldd~--~frdeL~~f~~~~~~~~I~~-ehR~ 87 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----PYL-TPYKDNLENLLDDK--TFRDELTTFNLSDESSVIEE-EHRP 87 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHH-HhHHHHHHHHcCcc--hHHHHHHhhcccCCcCCCCH-HHHh
Confidence 3567778889999999999999998876432 111 11223445555554 344444332211110 0112 2345
Q ss_pred hHHHHHHHhh
Q 008806 358 QLLPIFLSLL 367 (553)
Q Consensus 358 ~l~p~l~~~l 367 (553)
.++|++..+|
T Consensus 88 ~l~pvvlRIL 97 (141)
T PF07539_consen 88 ELMPVVLRIL 97 (141)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 333
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=63.36 E-value=3e+02 Score=32.27 Aligned_cols=68 Identities=10% Similarity=0.161 Sum_probs=42.3
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhh
Q 008806 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348 (553)
Q Consensus 281 llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~ 348 (553)
.+..+++.|+...-.|-.+++.+|-.+..--..+ .+....++.+..++.+++..+-...+.++-.+..
T Consensus 531 CLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 531 CLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 5666777777666666666666665554432222 2334567778888888887776666666666543
No 334
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=62.63 E-value=2.7e+02 Score=31.39 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=42.7
Q ss_pred hCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc
Q 008806 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS--WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL 289 (553)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~--~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll 289 (553)
.|.|..-+..|++.+..+-..-+. ..|...+.|.. |++|.++|.+|...+....+-...+.++..+.+..
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~s~--------~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~f 724 (1180)
T KOG1932|consen 653 QDRDVVAQMEAIESLEALPSTASR--------SALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKF 724 (1180)
T ss_pred hcccHHHHHHHHHHHHcCCcchhH--------HHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHh
Confidence 566666666667666654432111 34445555543 89999999999998865422223356777776654
No 335
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=59.97 E-value=39 Score=34.13 Aligned_cols=109 Identities=8% Similarity=0.091 Sum_probs=77.9
Q ss_pred HhHHHHHHHhhCCCChHHHHHHHHHHHHhh---hhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh-
Q 008806 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVN---QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF- 432 (553)
Q Consensus 357 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~---~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~- 432 (553)
..+...+++.|.+++..|...+...++.++ +.+|...+...++..+..+..+++...|......+..+.-.+....
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 456777888888866555555555555443 3345566778899999998888888888888888888876665541
Q ss_pred ---hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 433 ---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 433 ---~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
...--+..++.+.+|+...|.....+.+..+.-
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 112224567788999999999999998887764
No 336
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=59.71 E-value=3.2e+02 Score=31.38 Aligned_cols=139 Identities=19% Similarity=0.266 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhh------------CCChhHHHHHHHHHH
Q 008806 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ------------DDQDSVRLLAVEGCA 227 (553)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~------------d~~~~vr~~a~~~l~ 227 (553)
.-.+++..+..+++..+..+|.++.-+||.+-..+- +.+.+.+-+.+..... ...+.+|...+..+.
T Consensus 193 SaR~LFk~ivPlLks~~~~~r~AaVlaLG~~n~~v~-~~LleeL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl~ 271 (1120)
T PF14228_consen 193 SARELFKLIVPLLKSESSSFRDAAVLALGSINLNVY-RTLLEELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVLR 271 (1120)
T ss_pred CHHHHHHHHhhhhccCcHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHH
Confidence 446789999999999999999999988887544332 1222333333322110 123568888887777
Q ss_pred HhhccCCcch------hhhchHHHHHHh---cC----CCCH---HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 008806 228 ALGKLLEPQD------CVAHILPVIVNF---SQ----DKSW---RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD 291 (553)
Q Consensus 228 ~l~~~~~~~~------~~~~ll~~l~~l---~~----d~~~---~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d 291 (553)
.+++.+.+.. ....++.++... +. +.+| .+|..+|..+.++...+.... .+++
T Consensus 272 llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~---------se~f-- 340 (1120)
T PF14228_consen 272 LLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAK---------SEWF-- 340 (1120)
T ss_pred HHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhch---------hhcC--
Confidence 7777765421 122344444432 22 2334 577777777777766542211 1112
Q ss_pred CcHHHHHHHHHHHHHHHHhh
Q 008806 292 NEAEVRIAAAGKVTKFCRIL 311 (553)
Q Consensus 292 ~~~~vr~~a~~~l~~~~~~~ 311 (553)
..+.|..+...+..++...
T Consensus 341 -pfe~RkslF~l~~eWCGy~ 359 (1120)
T PF14228_consen 341 -PFEARKSLFNLFEEWCGYS 359 (1120)
T ss_pred -CHHHHHHHHHHHHHHhhhh
Confidence 2467777777777777643
No 337
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=59.27 E-value=21 Score=25.43 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhh-hChhhhHH-HHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHh
Q 008806 414 RLAIIEYIPLLASQ-LGVGFFDD-KLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 414 R~~~~~~l~~i~~~-~~~~~~~~-~l~~~l~~~l~-D~~~~VR~~a~~~l~~l~~~~ 467 (553)
..+++.+++.++.. .|...+.+ .+++.+.++.. .++..||-.+..+++-+.++.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 46788899999875 44444442 57888877655 689999999999999998764
No 338
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=55.13 E-value=1.9e+02 Score=27.34 Aligned_cols=186 Identities=12% Similarity=0.088 Sum_probs=106.7
Q ss_pred ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh-hCHH-----HH--HHhHHHHHHHhccCCcHHHHHHHHHHHHhh-hh
Q 008806 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-LNPE-----LA--IQHILPCVKELSSDSSQHVRSALASVIMGM-AP 348 (553)
Q Consensus 278 ~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~-~~~~-----~~--~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l-~~ 348 (553)
...+++.+++.+.+-+.+-|..++.....+... +|.. .+ ...+++.+...-.+ ...+ ++ .+|.+ .+
T Consensus 77 ~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~i---aL-~cg~mlrE 151 (342)
T KOG1566|consen 77 NADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEI---AL-TCGNMLRE 151 (342)
T ss_pred hCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHH---HH-HHHHHHHH
Confidence 345677777778787777787777776665542 2211 11 12233333333222 1222 11 12222 11
Q ss_pred hhCHHhHH-----HhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch---hhHH---hhHHH-HHHHhhcCCCcHHHHH
Q 008806 349 LLGKDATI-----EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLS---QSLLP-AIVELAEDRHWRVRLA 416 (553)
Q Consensus 349 ~~~~~~~~-----~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~---~~ll~-~l~~~~~d~~~~vR~~ 416 (553)
+...+... +.-...+....+-++.++-..|+.++..+...... +.+. +.+.+ .-..++.+.|+-+|..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 11222111 11123344555667777877788777777654321 1111 22223 3566788999999999
Q ss_pred HHHHHHHHHhhhChhhhH------HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 417 IIEYIPLLASQLGVGFFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 417 ~~~~l~~i~~~~~~~~~~------~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
+...++.+...-.....+ +.-+..++.+++|++.+++..|.+....++.+-.
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 999999887543333222 1334577889999999999999999988887654
No 339
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=53.51 E-value=88 Score=25.73 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=33.0
Q ss_pred HhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCC
Q 008806 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 410 (553)
Q Consensus 357 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~ 410 (553)
+.+...+..+|.+++.+|+..|++++-..-. ..+ ...-..|..++.|..
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~l-~pY~d~L~~Lldd~~ 64 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----PYL-TPYKDNLENLLDDKT 64 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHH-HhHHHHHHHHcCcch
Confidence 4566777888899999999999888876543 122 223455666666653
No 340
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=51.47 E-value=1.4e+02 Score=24.61 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=56.9
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC-CCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHH-
Q 008806 328 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPA- 401 (553)
Q Consensus 328 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~- 401 (553)
+..++|..-..++..+.. ...|+. ..+..+.+-++ ..++.|...|+..+..+++..|.... ...++..
T Consensus 14 l~~~dw~~ileicD~In~--~~~~~k----~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~ 87 (141)
T cd03565 14 LQSEDWGLNMEICDIINE--TEDGPK----DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV 87 (141)
T ss_pred CCCcCHHHHHHHHHHHhC--CCCcHH----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence 345677776666665543 122322 23444555554 45677777778888888887776542 2445554
Q ss_pred HHHhhcC---CCcHHHHHHHHHHHHHHhhhChh
Q 008806 402 IVELAED---RHWRVRLAIIEYIPLLASQLGVG 431 (553)
Q Consensus 402 l~~~~~d---~~~~vR~~~~~~l~~i~~~~~~~ 431 (553)
|..++.. .+..|+..++..+...+..+..+
T Consensus 88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 5555542 23467777777777777665443
No 341
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=51.11 E-value=1.8e+02 Score=25.98 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=48.1
Q ss_pred HHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-----cCCCcHHHHHHHHHHhhccccccCCc
Q 008806 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-----NNDDDDEVLLAMAEELGVFIPYVGGV 81 (553)
Q Consensus 13 ~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-----~~d~~~~vr~~~~~~l~~l~~~~~~~ 81 (553)
.+...|.|.|..+|..|++.|......-.......+++.+-.. +..+.|.+++..|..|+.+...+..+
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 4677899999999999999998765433221122333333333 56778899999999998888766554
No 342
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.51 E-value=1.2e+02 Score=30.78 Aligned_cols=74 Identities=9% Similarity=0.185 Sum_probs=56.3
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhh----HHHHHHHHHHHccC--CchHHHHHHHHHHHHHHHHhCh
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~----~~~l~~~l~~~l~D--~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
....-.|.+.+++.+..+..-|+..|..+++.||..+. ...+++-++..... ....||..++..+......++.
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 34555667777777778888888888889999888654 34577766666654 4678999999999999988865
No 343
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=50.01 E-value=96 Score=27.52 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=21.6
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~ 270 (553)
..+++.+..++.|+...|+.+...+|.+++.
T Consensus 153 ~~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 153 LEIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred hHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 3466777777777777777777777777665
No 344
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=49.51 E-value=3.7e+02 Score=29.01 Aligned_cols=151 Identities=16% Similarity=0.096 Sum_probs=88.2
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcchhhcch
Q 008806 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (553)
Q Consensus 9 ~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 88 (553)
..|..|+..|.|.|..+...+-..+......-...-....|+.++.. ..+.. +..+|..+- +.+...++
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~--t~s~~----~~~il~~~~-----~P~~K~~~ 72 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLS--TNSQR----ALEILVGVQ-----EPHDKHLF 72 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhh--cCcHH----HHHHHHhcC-----CccHHHHH
Confidence 45788999999999887766655554432111011112334443333 22221 233333321 23334566
Q ss_pred hHHHhhhccchhHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHH-hcCCCcchhhhHhhhhHhhcCCCChH---HH
Q 008806 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRL-AAGEWFTARVSACGLFHIAYPSAPDI---LK 161 (553)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~---~~~~~l~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~~---~~ 161 (553)
..+...... +.-|..++..|+.++..-++.. ....+++-+.++ ..|.+..+-..|+.++.-+.+++... +.
T Consensus 73 ~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L 150 (668)
T PF04388_consen 73 DKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHL 150 (668)
T ss_pred HHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHH
Confidence 666555544 3468889999999888765532 222355555444 45777777778888777777777544 77
Q ss_pred HHHHHHHHHhc
Q 008806 162 TELRSIYTQLC 172 (553)
Q Consensus 162 ~~l~~~l~~ll 172 (553)
.+++.+|..++
T Consensus 151 ~~Lf~If~Rl~ 161 (668)
T PF04388_consen 151 PDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHH
Confidence 88888888876
No 345
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.28 E-value=2.8e+02 Score=28.24 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=40.1
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHHHHhhcC--CCcHHHHHHHHHHHHHHhhhCh
Q 008806 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV 430 (553)
Q Consensus 359 l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~~ 430 (553)
.+-.+.+.++..++.|..-|+..|..+++..|..+. .+.+++.++..... .+..||..++.+|......++.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 344555556655566666666666666666655432 24455554444433 3455666666666666665544
No 346
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=48.98 E-value=3.4e+02 Score=28.45 Aligned_cols=41 Identities=29% Similarity=0.154 Sum_probs=33.5
Q ss_pred hChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 428 LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 428 ~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
++...-...++..+.+..-..++.||.+|..+|..++...+
T Consensus 463 L~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 463 LPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred CCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 34443346788888888889999999999999999999874
No 347
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.17 E-value=70 Score=28.13 Aligned_cols=73 Identities=15% Similarity=0.007 Sum_probs=53.7
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
..++|.+.+.+.+-+...|.-|-..+..+....|.. .+.++++..+-..+...+.+|...+++++.++....|
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~ 187 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG 187 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc
Confidence 456777777777777777777777777777666644 2456677777778888888999999999888876543
No 348
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.83 E-value=2.6e+02 Score=28.15 Aligned_cols=109 Identities=18% Similarity=0.260 Sum_probs=71.4
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHH
Q 008806 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438 (553)
Q Consensus 359 l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~ 438 (553)
+..++..+.++..+++--.-+++|..++..-..+ . ......|..++...+..+|..++..+..+.. -...|..-++
T Consensus 8 l~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee-~-~~~~~~L~~~~~~~h~~vR~l~lqii~elF~--rs~~FR~lii 83 (661)
T KOG2374|consen 8 LIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE-V-RLSSQTLMELMRHNHSQVRYLTLQIIDELFM--RSKLFRTLII 83 (661)
T ss_pred HHHHHHHHhhcCCcccChHHHHHHHHHHhccHHH-H-HHHHHHHHHHHhhcCchHHHHHHHHHHHHHH--hhHHHHHHHH
Confidence 4455556666777777777778888888765544 2 5566677788888899999999998887753 2222333333
Q ss_pred HHHHHHc-----cCC----------chHHHHHHHHHHHHHHHHhChhH
Q 008806 439 ALCMQWL-----QDK----------VYSIRDAAANNLKRLAEEFGPEW 471 (553)
Q Consensus 439 ~~l~~~l-----~D~----------~~~VR~~a~~~l~~l~~~~~~~~ 471 (553)
..+..+| +++ -..+|..|++++...-+.+|..+
T Consensus 84 ~n~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~~y 131 (661)
T KOG2374|consen 84 ENLDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGFHY 131 (661)
T ss_pred hCHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3222222 122 13589999999999888888654
No 349
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=44.72 E-value=2e+02 Score=25.09 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=14.9
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 008806 242 ILPVIVNFSQDKSWRVRYMVANQLYELC 269 (553)
Q Consensus 242 ll~~l~~l~~d~~~~vR~~~~~~l~~l~ 269 (553)
++..+.++.-++--+||..+..++..+.
T Consensus 8 ~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 8 IIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444456666666666665
No 350
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=43.25 E-value=3.3e+02 Score=26.65 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=57.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHHH
Q 008806 328 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV 403 (553)
Q Consensus 328 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l~ 403 (553)
....+|.+-..+|..++.=. ..| ...+..+.+.++..++.|...|+..++.++...|.... ...+...|.
T Consensus 21 nT~enW~~IlDvCD~v~~~~-~~~-----kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~ 94 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVGSDP-DGG-----KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELR 94 (462)
T ss_pred cccccHHHHHHHHHhhcCCC-ccc-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHH
Confidence 34456766555544443332 112 23456666777777777877787777777777665432 244555566
Q ss_pred Hhhc-CCCcHHHHHHHHHHHHHHhhhChh
Q 008806 404 ELAE-DRHWRVRLAIIEYIPLLASQLGVG 431 (553)
Q Consensus 404 ~~~~-d~~~~vR~~~~~~l~~i~~~~~~~ 431 (553)
.++. ..+.+|+...-..+...+..+..+
T Consensus 95 al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 95 ALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 6666 445667766666666666544433
No 351
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=42.87 E-value=2.3e+02 Score=24.74 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=30.4
Q ss_pred HHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC-hhHHhhhhhhhhhhhhhh
Q 008806 422 PLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG-PEWAMQHITPQKSHVLDC 486 (553)
Q Consensus 422 ~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~-~~~~~~~i~p~l~~~l~~ 486 (553)
..+.+.++.+.+...++.-+..........+...+..+|-..+.... .......+...+..++++
T Consensus 73 ~~l~~LL~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 73 PRLVKLLDLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKE 138 (193)
T ss_pred HHHHHHhccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 33333344444444455444444455555555555555555554321 112234555555555543
No 352
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=42.76 E-value=5.8e+02 Score=29.41 Aligned_cols=68 Identities=18% Similarity=0.075 Sum_probs=43.3
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 008806 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 309 (553)
Q Consensus 242 ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~ 309 (553)
++......|-..++.+-.+...++.++....+.. .....++...+-.+.|++.+||..|++-|..+-.
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 5555555555566777666666666555332221 1123567777777788899999999998876654
No 353
>PHA02922 hypothetical protein; Provisional
Probab=42.46 E-value=1.8e+02 Score=23.51 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=60.6
Q ss_pred CCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC
Q 008806 58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE 137 (553)
Q Consensus 58 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~ 137 (553)
.++.+||..+...|.+-.......+-...+...+..+-.|.+...+ +-+..+.+.++-+.+. .-..++.-++..+
T Consensus 21 ~~~DdI~~~i~DYiyWSs~~~r~Re~AG~vf~vleSFr~DAe~VFg----~nlr~fVk~~s~~gv~-~s~~~I~c~l~~d 95 (153)
T PHA02922 21 NTVADVRHCLTEYILWVSHRWTHRESAGSLYRLLISFRTDATELFG----SELKEFSDSLPWDNID-NCVEIIKCFIRND 95 (153)
T ss_pred cccchHHHHHHHHHHHhhccccccCccchHHHHHHHHHhhHHHHHH----HHHHHHHHhCchhhhH-HHHHHHHHHhccc
Confidence 4567789998888887666555555666777777777655443222 2334455555443332 2344455555433
Q ss_pred Cc-chhhhH--hhhhHhhcCCCChH---HHHHHHHHHHHhcCCCC
Q 008806 138 WF-TARVSA--CGLFHIAYPSAPDI---LKTELRSIYTQLCQDDM 176 (553)
Q Consensus 138 ~~-~~r~~~--~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~ 176 (553)
+. .+|+++ +.++...+.+.|.+ .--+++..+..++.|.+
T Consensus 96 n~ktirEa~AiIGLcA~aAeYWGgePt~~S~~vL~Ll~~LLsd~D 140 (153)
T PHA02922 96 SMKTAKELRAIIGLCTQSAIVSGRVFNDKYIDILLMLRKILNEND 140 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhchhH
Confidence 32 344433 23444555544443 22344455555555443
No 354
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.42 E-value=1e+02 Score=27.20 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=50.1
Q ss_pred hhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 008806 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (553)
Q Consensus 201 ~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 278 (553)
...+|.+...+.+.+..-|..|-+.+..+....+.+ ...+.++..++..+...+-+|.....+.|..+....+-- -
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v--G 190 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV--G 190 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc--c
Confidence 346677776666665555555655555555444432 234556666677777777777777777777776543311 1
Q ss_pred cchHHHHHHhc
Q 008806 279 MDLVPAYVRLL 289 (553)
Q Consensus 279 ~~llp~l~~ll 289 (553)
..++|++-+++
T Consensus 191 ~aLVPfYRQlL 201 (262)
T KOG3961|consen 191 AALVPFYRQLL 201 (262)
T ss_pred hhhhhHHHHhh
Confidence 34555555444
No 355
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=42.36 E-value=3.5e+02 Score=26.77 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=49.7
Q ss_pred hHHHHHHHhhCCC-ChHHHHHHHHHHHHhhhhhchhh--H-HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 008806 358 QLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDL--L-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 358 ~l~p~l~~~l~d~-~~~VR~~a~~~l~~~~~~~~~~~--~-~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~ 425 (553)
.++..+.++|+.. ++.+-.-|+.-++.++..+.... + +-.-...+.++++++|.+||..|+.++..+.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 5778888888654 47777788888888888764321 1 1123445778899999999999999998775
No 356
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.28 E-value=3.9e+02 Score=26.99 Aligned_cols=110 Identities=9% Similarity=0.029 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhcChhh--hhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHH
Q 008806 105 KAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMV 179 (553)
Q Consensus 105 ~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~V 179 (553)
.|...|..+++...-+. ....+..++.+++.-++...-......+-.+.-..... ....++..+.++..-.++..
T Consensus 282 va~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL 361 (791)
T KOG1222|consen 282 VAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDL 361 (791)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHH
Confidence 34444555554443221 22335555555555444444444444443333222111 33456777777777788888
Q ss_pred HHHHHHHHHHHHhhhC--chhhhhhHHHHHHHhhhCC
Q 008806 180 RRSAASNLGKFAATVE--PAHLKTDIMSIFEDLTQDD 214 (553)
Q Consensus 180 r~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~~~~d~ 214 (553)
|+.....+-++.-.-| +..+...++|.+..++.++
T Consensus 362 ~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d 398 (791)
T KOG1222|consen 362 RKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD 398 (791)
T ss_pred HHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc
Confidence 8877777666553322 2334456777777766654
No 357
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=41.09 E-value=2.9e+02 Score=25.44 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHhcCCC-cchhhhHhhhhHhhcCCCChHHH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 008806 123 VDWYIPLVKRLAAGEW-FTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGKF 190 (553)
Q Consensus 123 ~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l 190 (553)
--++.|++....+... ...|..+...+|.+++.-+.+.. .+++|.+.+.++.++...+..|..-+..+
T Consensus 93 plyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 93 PLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp GGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3468898865555433 57899999999999987666622 46777777777666555555554444443
No 358
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=38.51 E-value=63 Score=22.99 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=29.7
Q ss_pred CcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhh
Q 008806 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARAL 40 (553)
Q Consensus 7 ~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~ 40 (553)
+=|-|.+++...+|.-+.+|..|++.|+.|....
T Consensus 37 aGYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 37 AGYTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CCcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4577999999999999999999999999887654
No 359
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=38.42 E-value=6.4e+02 Score=28.64 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh-CCCChHHHHHHHHHHHHh----hhh-hchhhHH---hhHHHHHH
Q 008806 333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQV----NQV-IGIDLLS---QSLLPAIV 403 (553)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l-~d~~~~VR~~a~~~l~~~----~~~-~~~~~~~---~~ll~~l~ 403 (553)
-.+|.++..+...++...+..... +.++.++ .|+++.+|...+..+..- ... .+..... ..-.+.+.
T Consensus 882 vd~r~~a~~~~v~~~~~~~~~~~l----~~~leil~~~~dp~~R~~i~~ml~~~~np~~~~~~~s~~~~~~~~~~~~~~~ 957 (1180)
T KOG1932|consen 882 VDVRICAEELNVDLGGVDGSPDDL----AYILEILENDPDPVIRHKILDMLSQSNNPVTKGGTESDLLKEALVERLWKLK 957 (1180)
T ss_pred hhhHHHhhhhhhhhcccCCChHHH----HHHhhhcccCcchHHHHHHHHHhhccCCceeeccccCccccHHHHHhhhhhh
Confidence 467888887777777655544333 3333444 577888999888877762 111 1111111 22334444
Q ss_pred HhhcCCCcHHHHHHHHHHHHH
Q 008806 404 ELAEDRHWRVRLAIIEYIPLL 424 (553)
Q Consensus 404 ~~~~d~~~~vR~~~~~~l~~i 424 (553)
+.-..+++..|..+.+++-.+
T Consensus 958 ~~~k~~D~~~r~~v~d~~~~L 978 (1180)
T KOG1932|consen 958 NLSKEPDICSRSSVLDVYIAL 978 (1180)
T ss_pred ccCCCCCeEeEeehhhhhhhe
Confidence 444566777776655554433
No 360
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.64 E-value=4.6e+02 Score=26.75 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc----
Q 008806 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---- 236 (553)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---- 236 (553)
-.++...+..-+.--.+..|...+.+|.-+-..- -.....++..|..++.-.+...|..+..-+......++..
T Consensus 18 P~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~--~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~ 95 (616)
T KOG2229|consen 18 PSELKDLLRTNHTVLPPELREKIVKALILLRNKN--LIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKND 95 (616)
T ss_pred hHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC--cCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccc
Confidence 3444555555445557888888888877665421 1223455566665666666666777766555554433321
Q ss_pred hhhhchHHHHHHhcCCCCHH
Q 008806 237 DCVAHILPVIVNFSQDKSWR 256 (553)
Q Consensus 237 ~~~~~ll~~l~~l~~d~~~~ 256 (553)
.....+-.++..++.+.++.
T Consensus 96 klnkslq~~~fsml~~~d~~ 115 (616)
T KOG2229|consen 96 KLNKSLQAFMFSMLDQSDST 115 (616)
T ss_pred hHHHHHHHHHHHHHhCCCch
Confidence 22233555666677776653
No 361
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.46 E-value=7.7e+02 Score=29.29 Aligned_cols=225 Identities=12% Similarity=0.106 Sum_probs=115.0
Q ss_pred hhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhh--
Q 008806 47 KELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV-- 123 (553)
Q Consensus 47 ~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~-- 123 (553)
..+.|+-.. -.+.++++|..+.+|...-++ .-|..++.++..-..+.+..+-..+.+....+...+....+.
T Consensus 1036 ~fl~Pfe~im~~s~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~ 1110 (1514)
T KOG0929|consen 1036 DFLRPFEHIMKRSSSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQE 1110 (1514)
T ss_pred hhcCcchHHhhccCcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhh
Confidence 455555544 456788999999988873222 346678888887777887777777777777655543332222
Q ss_pred ----hhHHHHHHHHhcC-CCcchhhhHhhhhHh----hcCC-----CC------hH----HHHHHHHHHHHhcCCCCHHH
Q 008806 124 ----DWYIPLVKRLAAG-EWFTARVSACGLFHI----AYPS-----AP------DI----LKTELRSIYTQLCQDDMPMV 179 (553)
Q Consensus 124 ----~~~l~~l~~~~~~-~~~~~r~~~~~~l~~----l~~~-----~~------~~----~~~~l~~~l~~ll~d~~~~V 179 (553)
...++.+.....+ ..+..-..+++.+-. +.+. .. .+ .+-.++-.+...+.|....|
T Consensus 1111 ~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~v 1190 (1514)
T KOG0929|consen 1111 MDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEV 1190 (1514)
T ss_pred hHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHH
Confidence 2233444443332 122222222222211 1111 11 01 22334444555566889999
Q ss_pred HHHHHHHHHHHHhhhCch---hhhh----hHHHHHHHhhhCCCh-----hHHHHHHHHHHHhhccCCc-----chhhhch
Q 008806 180 RRSAASNLGKFAATVEPA---HLKT----DIMSIFEDLTQDDQD-----SVRLLAVEGCAALGKLLEP-----QDCVAHI 242 (553)
Q Consensus 180 r~~a~~~l~~l~~~~~~~---~~~~----~l~p~l~~~~~d~~~-----~vr~~a~~~l~~l~~~~~~-----~~~~~~l 242 (553)
|+.+.+.+-.+....|.+ ..++ .++|++...-.+.+. .....+..++-.++..+.. ....+.+
T Consensus 1191 r~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~ 1270 (1514)
T KOG0929|consen 1191 RKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKV 1270 (1514)
T ss_pred HHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888877752 2222 444544332222222 2223333333333332211 0112223
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 008806 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (553)
Q Consensus 243 l~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~ 276 (553)
+..+...+..++...-.....+|..+....|..+
T Consensus 1271 ~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~f 1304 (1514)
T KOG0929|consen 1271 LGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKF 1304 (1514)
T ss_pred HHHHHHHhcCcchhhHHhHHHHHHHHHHhccccc
Confidence 3333334444555555556666777766666554
No 362
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=37.37 E-value=1.8e+02 Score=25.00 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHHHHHhh-hChhhhH--HHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 410 HWRVRLAIIEYIPLLASQ-LGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 410 ~~~vR~~~~~~l~~i~~~-~~~~~~~--~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
+......++.|+..+... .|-+.+. +..+..+...+..+...+|..+++.|..++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 344555556666555432 2222111 235566667777777888888888877664
No 363
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=36.53 E-value=3.1e+02 Score=24.49 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=45.2
Q ss_pred hhHHHHHHHhhcCCCcHHHHH-HHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh
Q 008806 396 QSLLPAIVELAEDRHWRVRLA-IIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~-~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
+.+++......++.+...|.+ .+.++. ..........+++++-.++.|...-|+.+.-++|.++.....+.
T Consensus 117 ~~li~~~~a~~~~~~~w~rraaiv~~l~----~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~ 188 (222)
T COG4912 117 PDLIEEWAADAEEDNRWERRAAIVHQLV----YKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNEL 188 (222)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHH----HhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhchHH
Confidence 455665533334444444443 333332 23334444568888889999999999999999999999854433
No 364
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=36.08 E-value=2.8e+02 Score=23.77 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHhhhh-hchhhH--HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 008806 370 EFPDVRLNIISKLDQVNQV-IGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 370 ~~~~VR~~a~~~l~~~~~~-~~~~~~--~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~ 425 (553)
.+......++.++..++.. .|.+.+ .+..+..+...+.+++..+|..+++.+..+.
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4556677777777776653 333322 1556777777788888999999988887664
No 365
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.82 E-value=4.9e+02 Score=26.56 Aligned_cols=290 Identities=10% Similarity=0.062 Sum_probs=131.8
Q ss_pred HHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc----hhhhh
Q 008806 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKT 201 (553)
Q Consensus 126 ~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~----~~~~~ 201 (553)
+..++.....--.+..|.-.+.++-.+-.. ..-...+++..|..++.-.+...|+.+...+...++.+.. +....
T Consensus 21 l~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk-~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~klnk 99 (616)
T KOG2229|consen 21 LKDLLRTNHTVLPPELREKIVKALILLRNK-NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDKLNK 99 (616)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHhcc-CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 333443333333345555555444333221 0012456777788877777888898888877777765433 22222
Q ss_pred hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhh-hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-c--
Q 008806 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV-AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-T-- 277 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~-~-- 277 (553)
.+-.++..++.+++..--..|+..+..+-. ...|. ..-...+...+-..+++++.++...+-..-.. .++. .
T Consensus 100 slq~~~fsml~~~d~~~ak~a~~~~~eL~k---r~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~~D~~-dee~dsd~ 175 (616)
T KOG2229|consen 100 SLQAFMFSMLDQSDSTAAKMALDTMIELYK---RNIWNDSKTVNIITTACFSKVPKILVSGLRFFLGADNE-DEEDDSDS 175 (616)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHH---hcccccchhHHHHHHHHhccCcHHHHhhhHHhccCCcc-cccccccc
Confidence 333445566777776543444444433322 21111 11233333334455555555444332111000 0000 0
Q ss_pred -----ccchHHHHHHhcCCCcHHHHHHHH-HHHHH------------------HHHhhCHHHHHHhHHHHHHHhccCCcH
Q 008806 278 -----RMDLVPAYVRLLRDNEAEVRIAAA-GKVTK------------------FCRILNPELAIQHILPCVKELSSDSSQ 333 (553)
Q Consensus 278 -----~~~llp~l~~ll~d~~~~vr~~a~-~~l~~------------------~~~~~~~~~~~~~l~~~l~~l~~d~~~ 333 (553)
-+.+-..+.+..+... .-|.+.+ .+... +--.-+++.|.+.+.+.+... ....
T Consensus 176 ~~d~dg~~~~~l~~~~vnkkt-kkr~~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll~DpQ~fAEkLfk~~~~~--~er~ 252 (616)
T KOG2229|consen 176 ESDEDGPDADALLHQRVNKKT-KKRQKKLLRAAKSVKKKQKKKKNAPTFNFSAIHLLHDPQGFAEKLFKQLLAC--KERF 252 (616)
T ss_pred ccccccccHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHhcCCCCCCCCccHHHhhcChhHHHHHHHHHHhhh--hhhH
Confidence 0011122222211110 1111111 11111 111123455666666655443 3345
Q ss_pred HHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCC-cH
Q 008806 334 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH-WR 412 (553)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~-~~ 412 (553)
.+|...+..++.++.. ...+.-.+.|.+...++....+|.+-...+....-....++.+...+...-..+..|.+ +.
T Consensus 253 E~klm~~~lisRliG~--HkL~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP~d~iEpl~k~Ian~FVtD~~spE 330 (616)
T KOG2229|consen 253 EVKLMLMKLISRLIGI--HKLFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVPPDIIEPLLKTIANNFVTDENSPE 330 (616)
T ss_pred HHHHHHHHHHHHHhhh--hHHHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCChHHhhHHHHHHHHHhcccCCCcc
Confidence 6777777777666521 22334456788889998877777665555544444444444443333333334445543 34
Q ss_pred HHHHHHHHHHHHH
Q 008806 413 VRLAIIEYIPLLA 425 (553)
Q Consensus 413 vR~~~~~~l~~i~ 425 (553)
+-...+.++..+.
T Consensus 331 v~~vgiN~iREic 343 (616)
T KOG2229|consen 331 VMAVGINAIREIC 343 (616)
T ss_pred eeehhhhHHHHHH
Confidence 4444444444444
No 366
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=35.74 E-value=3.4e+02 Score=24.69 Aligned_cols=46 Identities=15% Similarity=0.337 Sum_probs=21.9
Q ss_pred HHHHHHHhhhCCC--hhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhc
Q 008806 203 IMSIFEDLTQDDQ--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS 250 (553)
Q Consensus 203 l~p~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~ 250 (553)
++..+...+.++. ..+-.+++.+|..+++.-+. +...+++.+..+-
T Consensus 115 lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~--~~~~Il~~ll~~~ 162 (239)
T PF11935_consen 115 LLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQ--FMSRILPALLSFN 162 (239)
T ss_dssp HHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGG--GHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhcC
Confidence 4444444444433 34445556666666654322 3344555555443
No 367
>PHA02861 uncharacterized protein; Provisional
Probab=35.53 E-value=2.4e+02 Score=22.90 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=63.3
Q ss_pred CCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcC
Q 008806 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG 136 (553)
Q Consensus 57 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~ 136 (553)
-.++.+++.++...+.+-.......+....+...+..+-.|.+..-+ +-+..+.+.++.+.+. .-..++.-++.+
T Consensus 13 ~~~~DdI~~~i~dYiyWSs~~~r~Re~AG~vf~vl~SFr~DA~~VFg----~~lr~fVk~~~~~~v~-~~~~~I~~~l~~ 87 (149)
T PHA02861 13 LNRDDDIRQIIVDYIYWSMYSYRSRSPAGKVFQVLKMFRRDSEIVFG----ENFRHIVKNFKTLGIE-DTVQAVKCFTVG 87 (149)
T ss_pred CCccchHHHHHHHHHHHhhccccccCccchHHHHHHHHHhhHHHHHH----HHHHHHHHhCCccchH-hHHHHHHHHhcc
Confidence 34567788988888887766555555666777777776555432222 2334455555443332 223444444444
Q ss_pred CCcchhhhH--hhhhHhhcCCCChH-----HHHHHHHHHHHhcCCCCHH
Q 008806 137 EWFTARVSA--CGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPM 178 (553)
Q Consensus 137 ~~~~~r~~~--~~~l~~l~~~~~~~-----~~~~l~~~l~~ll~d~~~~ 178 (553)
+ ..+|+++ +.++...+.+.|.+ .--+.+..+..++.|.+..
T Consensus 88 e-n~irE~cAiIGL~A~~AeYWGged~Pt~~S~~vl~l~~~Llsd~d~~ 135 (149)
T PHA02861 88 K-NALRESVSMVDLCASLAEYWGGEDLPTNDSLQALKLMTILLSDDDYS 135 (149)
T ss_pred c-HHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhhccHH
Confidence 3 3344433 33555566655544 2234555666666665543
No 368
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=35.22 E-value=3.7e+02 Score=24.92 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh-hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 398 ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
++-.+..++.++-..+|..++..+..+....+.. ....+++..+.++++.+ --..|.+.+..++..
T Consensus 189 ~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 189 ILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTD---LWMEALEVLDEIVTR 255 (262)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhh
Confidence 3344455555555555555555555555543321 13334444555555443 223344444444443
No 369
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=34.75 E-value=3.6e+02 Score=24.64 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=13.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 008806 166 SIYTQLCQDDMPMVRRSAASNLGKFAA 192 (553)
Q Consensus 166 ~~l~~ll~d~~~~Vr~~a~~~l~~l~~ 192 (553)
+...++.+.+++++-+.+.++.-.+..
T Consensus 221 kmv~~l~~~ps~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 221 KMVFQLVSMPSPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 333445555555555555555544443
No 370
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.15 E-value=4.3e+02 Score=25.41 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=66.6
Q ss_pred HHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHhH-----HHHHHHhc--cCCcHHHHHHHHHHHHhhhhhhCHH
Q 008806 282 VPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHI-----LPCVKELS--SDSSQHVRSALASVIMGMAPLLGKD 353 (553)
Q Consensus 282 lp~l~~ll~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l-----~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~~~~ 353 (553)
+..+++++.| ++..+|..+-.++..+....|.+...+.+ .|.+..++ ...++.|-..++-++..++-..+..
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 4666777777 44567755555555555545554333222 23333332 2345677777777776666433322
Q ss_pred h---HHHhHHHHHHHhhCCC--ChHHHHHHHHHHHHhhhhhchh--hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 008806 354 A---TIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 354 ~---~~~~l~p~l~~~l~d~--~~~VR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~ 425 (553)
. +..-.-....+.++-. ...|.+.++..+..++..-... .+...=...|.......+..++..+-.++..++
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 1 1111112223333221 2346666666666665421110 011111222334444555566665555555443
No 371
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.89 E-value=1.8e+02 Score=29.46 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhChhHHhhhhhhhhhhhhhhhcccccc
Q 008806 455 AAANNLKRLAEEFGPEWAMQHITPQKSHVLDCCQWSLMH 493 (553)
Q Consensus 455 ~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~~~~~~~~~ 493 (553)
...+++..|+..+|..+..-..+|...++++-+..|+.-
T Consensus 415 Ri~ecLm~IaalYgenFillQ~fP~~sdLI~lc~KRisg 453 (1034)
T KOG4190|consen 415 RIEECLMEIAALYGENFILLQFFPFCSDLIELCHKRISG 453 (1034)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhhccc
Confidence 346788889999999888778888888888777666543
No 372
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.70 E-value=2.5e+02 Score=27.21 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=13.7
Q ss_pred HhHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008806 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (553)
Q Consensus 357 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~ 384 (553)
+.+.+++..++.|.++.||..++.+|.+
T Consensus 46 ~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 46 RQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 3444444445555555555555544443
No 373
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=31.36 E-value=1e+02 Score=24.28 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=28.5
Q ss_pred HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhh
Q 008806 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (553)
Q Consensus 355 ~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~ 388 (553)
+....++.+.+-|.|++++|...|+..|...+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 3566788888999999999999999999888763
No 374
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=30.67 E-value=4.9e+02 Score=24.91 Aligned_cols=185 Identities=12% Similarity=0.089 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcH-HHHHHHHHHHHhhhhhhCHHhHHHhHH-HHHHHhhCCC
Q 008806 293 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGKDATIEQLL-PIFLSLLKDE 370 (553)
Q Consensus 293 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~-p~l~~~l~d~ 370 (553)
..++|.+|+.++..+... .+.....++..+...-.+.+. .....++..+-..-.....+....++- -++..++.|.
T Consensus 51 ~f~lR~AA~~c~kay~~~--N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn 128 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYN--NEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDN 128 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT---HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-
T ss_pred chHHHHHHHHHHHHHHhc--CHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcC
Confidence 478999999999987652 333333344333322222220 111113333322111111121122222 2344455553
Q ss_pred ChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhh----c-CCCcHHHHHHHHHHHHHHhhhChh--hhH--HHHHHHH
Q 008806 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA----E-DRHWRVRLAIIEYIPLLASQLGVG--FFD--DKLGALC 441 (553)
Q Consensus 371 ~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~----~-d~~~~vR~~~~~~l~~i~~~~~~~--~~~--~~l~~~l 441 (553)
+.-|+.+.+. ......-|.+. -.++..+..++ . +.+.+++...+..+....-..... .|. ..-++.+
T Consensus 129 -~~~Ke~al~V-~~~~~~~ge~~--vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 129 -PEAKEQALRV-TEGDESSGEEP--VTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp -HHHHHHHTT---EE--STTS----EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHH
T ss_pred -HHHHHHHHcc-cCCCCCCCCCc--ccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHH
Confidence 5556655443 11111222222 22333333332 2 456777777777766544322111 111 0123344
Q ss_pred HHH---ccCCchHHHHHHHHHHHHHHHHhChh--HHhhhhhhhhhhh
Q 008806 442 MQW---LQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQKSHV 483 (553)
Q Consensus 442 ~~~---l~D~~~~VR~~a~~~l~~l~~~~~~~--~~~~~i~p~l~~~ 483 (553)
+.. ..+.+.-|+.-++-.||...+....+ .-+..+.+.+.+-
T Consensus 205 i~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~~~R~~l~~ll~~r 251 (312)
T PF04869_consen 205 IEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSPIPRATLHPLLTKR 251 (312)
T ss_dssp HHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCCC-HHHHHHHHHHH
T ss_pred HHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHh
Confidence 442 33566778888888888888744321 2234455554433
No 375
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.50 E-value=1.2e+03 Score=29.34 Aligned_cols=197 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred hhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhhhCc---hhhhhh-HHHHHHHhhhCC
Q 008806 142 RVSACGLFHIAYPSAPDILKTELRSIYTQLCQD---DMPMVRRSAASNLGKFAATVEP---AHLKTD-IMSIFEDLTQDD 214 (553)
Q Consensus 142 r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d---~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~-l~p~l~~~~~d~ 214 (553)
+..+...+..+....+........+.+..++.. ....+|..+.++...++..+.. ..+... +++.+..++++.
T Consensus 897 k~~tl~~I~~~i~~~g~~~v~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~l~~~ 976 (2382)
T KOG0890|consen 897 KKKTLKGIKKLISFMGSKAVSTRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILNDNEKSDILDRNIIAALFPLLEHI 976 (2382)
T ss_pred HHHHHHhHHHHHhhccHHHHHHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhccc
Q ss_pred ChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcH
Q 008806 215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 294 (553)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~ 294 (553)
+...+....+.+.. ........+.+.+. ++.+.. +..........+..+..+......++.+.+.+.+++-
T Consensus 977 ~~~~v~~i~~~i~~-----~~~d~i~~~~~~~~-~l~~~p---~~~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~enl 1047 (2382)
T KOG0890|consen 977 ELNLVSSILDFISL-----DNRDNIQILKSDIP-ILPSIP---ELGNLKAAIQEARGLLSEDDLDDQLRDFMKKLKHENL 1047 (2382)
T ss_pred cHHHHHHHHHHHHH-----hhHHHHHhhhcccc-ccCCch---HHHHHHHHHHHHHhhccccchhhhhHHHHHHhHhhhh
Q ss_pred HHHHHHHHHHHHHHH------------hhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhh
Q 008806 295 EVRIAAAGKVTKFCR------------ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (553)
Q Consensus 295 ~vr~~a~~~l~~~~~------------~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~ 347 (553)
.||..++.-+..+.. ..+.+.....++..+...+++...+.+...+++++.++
T Consensus 1048 ~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~~~~~~~~akcLg~lg 1112 (2382)
T KOG0890|consen 1048 PVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKKTSQLEELCAKCLGELG 1112 (2382)
T ss_pred HHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 376
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=30.48 E-value=4.3e+02 Score=24.20 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=14.5
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHH
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTI 36 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i 36 (553)
.+..++..+.+++. |.+|+..+++.
T Consensus 27 k~~~~i~~l~~~p~--rE~aL~ELskk 51 (293)
T KOG3036|consen 27 KAYQLILSLVSPPT--REMALLELSKK 51 (293)
T ss_pred chhhHHHHhhCCch--HHHHHHHHHHh
Confidence 35555656655544 66776666544
No 377
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.01 E-value=1.6e+02 Score=23.11 Aligned_cols=30 Identities=23% Similarity=0.030 Sum_probs=18.7
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 436 ~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
-.++.+++-+.|++.+|+..|++.|.+.+.
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666665554
No 378
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.41 E-value=7.5e+02 Score=26.72 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=56.4
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh---hHHHHHHHHHHH-ccCCchHHHHHHHHHHHHHHHHhChhH
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEW 471 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~---~~~~l~~~l~~~-l~D~~~~VR~~a~~~l~~l~~~~~~~~ 471 (553)
..++..|.+.+..+ ..|..++..++.++..-+.-. ....+++.++++ ..|.+..|-..|+.+|-.+...+...
T Consensus 69 K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~- 145 (668)
T PF04388_consen 69 KHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSS- 145 (668)
T ss_pred HHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccch-
Confidence 45566666666654 566777777777775433321 123456666664 45888888888988888888776533
Q ss_pred Hhhhhhhhhhhhhhh-hcccc
Q 008806 472 AMQHITPQKSHVLDC-CQWSL 491 (553)
Q Consensus 472 ~~~~i~p~l~~~l~~-~~~~~ 491 (553)
....+|.|+.++.. ..|..
T Consensus 146 -l~~~L~~Lf~If~Rl~~W~~ 165 (668)
T PF04388_consen 146 -LGPHLPDLFNIFGRLLSWER 165 (668)
T ss_pred -hhHHHHHHHHHHHHHHHccc
Confidence 23556666665442 34554
No 379
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=28.18 E-value=5.8e+02 Score=25.03 Aligned_cols=201 Identities=17% Similarity=0.137 Sum_probs=91.1
Q ss_pred HHHHhcCccHHHHHHHhhhHHHHH-HhhChHHHh---hhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCC----cchh
Q 008806 14 LIDELKNDDIQLRLNSIRRLSTIA-RALGEERTR---KELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG----VEHA 84 (553)
Q Consensus 14 ll~~L~~~d~~~R~~a~~~l~~i~-~~~~~~~~~---~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~ 84 (553)
.+...+......|..+.+.+.-.+ ..+-++... ..+...+.. .+.+..+-+..++..++.++-..+. +...
T Consensus 65 ~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~ 144 (427)
T KOG2842|consen 65 DLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWT 144 (427)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHH
Confidence 334445667788988888776432 233344332 244444444 4444444444455455544433332 3344
Q ss_pred hcchhHHHhhhccchhH--HHHHHHHHHHHHHhhcChh--hhhhh--HHHHHHHH--hcCCCcchhhhHhh---------
Q 008806 85 HVLLPPLETLCTVEETC--VRDKAVESLCRIGSQMRES--DLVDW--YIPLVKRL--AAGEWFTARVSACG--------- 147 (553)
Q Consensus 85 ~~l~~~l~~l~~~~~~~--vR~~a~~~l~~l~~~~~~~--~~~~~--~l~~l~~~--~~~~~~~~r~~~~~--------- 147 (553)
....+.+..+..+++.. .|..+..+++..+-....+ .+... .+...+.. ..+++..+-.++..
T Consensus 145 ~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (427)
T KOG2842|consen 145 KTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTCLT 224 (427)
T ss_pred hccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHHHH
Confidence 45556665555555544 4555555554433322111 11111 11111111 22222211111100
Q ss_pred ---hhHhhcCCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hh---hhhhHHHHHHHhhhCC
Q 008806 148 ---LFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AH---LKTDIMSIFEDLTQDD 214 (553)
Q Consensus 148 ---~l~~l~~~~~~~-~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~---~~~~l~p~l~~~~~d~ 214 (553)
.+-.+.+....+ .-.-++|.+..++.....++|.++..++.-+...... +. -.+.+...+..+.+|.
T Consensus 225 ~~a~~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latds 301 (427)
T KOG2842|consen 225 AWSLLLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDS 301 (427)
T ss_pred HHHHHHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhh
Confidence 001111111122 2223567777777777777777777776665554432 21 2345555555555554
No 380
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.33 E-value=8.2e+02 Score=26.15 Aligned_cols=256 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCcCcHHHHHHHhc-CccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh--cCCCcHHHHHHHHHHhhccccccCC--
Q 008806 6 EPLYPIAVLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGG-- 80 (553)
Q Consensus 6 ~~~~~i~~ll~~L~-~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~--~~d~~~~vr~~~~~~l~~l~~~~~~-- 80 (553)
|++..++.+.+.|- +.|+..|..|.+.|..+.. .++.+..-+- -..+.|--.-.|+.+|.+++....+
T Consensus 2 ~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-------speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lp 74 (1082)
T KOG1410|consen 2 QSLAQLESLCKDLYESTDPTARHRAEKALAELSE-------SPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLP 74 (1082)
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCc
Q ss_pred cchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh---------hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHh
Q 008806 81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHI 151 (553)
Q Consensus 81 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---------~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~ 151 (553)
-...-.+-..+.+......|....-.+.++..+...+.+ +......+.-+.+.+++.+.+.-..++.++..
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHH
Q ss_pred hcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhh---------------------------
Q 008806 152 AYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK--------------------------- 200 (553)
Q Consensus 152 l~~~~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~--------------------------- 200 (553)
+..-.... -...-.....+.-.|.-..|=.-++..|......--++...
T Consensus 155 LvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs 234 (1082)
T KOG1410|consen 155 LVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES 234 (1082)
T ss_pred HHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccc
Q ss_pred -------------------hhHHHHHHHhhhCCChhHHHHHHHHHHHhhcc-------CCcchhhhchHHHHHHhcCCC-
Q 008806 201 -------------------TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-------LEPQDCVAHILPVIVNFSQDK- 253 (553)
Q Consensus 201 -------------------~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~-------~~~~~~~~~ll~~l~~l~~d~- 253 (553)
...+.++..+...-.+..-..++.++..++.. .....+..+++.-++..++.+
T Consensus 235 sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~ 314 (1082)
T KOG1410|consen 235 SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQ 314 (1082)
T ss_pred cccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCc
Q ss_pred ---CHHHHHHHHHHHHHH
Q 008806 254 ---SWRVRYMVANQLYEL 268 (553)
Q Consensus 254 ---~~~vR~~~~~~l~~l 268 (553)
++.--...|+.++.+
T Consensus 315 ~LsD~~nyHeFCRllaRl 332 (1082)
T KOG1410|consen 315 GLSDPANYHEFCRLLARL 332 (1082)
T ss_pred CCCCcchHHHHHHHHHHH
No 381
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=26.16 E-value=3.4e+02 Score=25.25 Aligned_cols=63 Identities=32% Similarity=0.358 Sum_probs=43.1
Q ss_pred CCCCcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhcc
Q 008806 4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF 74 (553)
Q Consensus 4 ~~~~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l 74 (553)
++|-++-+..|...|+.+|+..| .+.+.++.. .-..+.|+|.+..+.+ ++.+-..+.+.|..+
T Consensus 8 g~dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~------~iv~~DLiPiL~~~~~-~~~l~~~~l~LLV~L 70 (266)
T PF04821_consen 8 GDDCLECLKDLKRFLRRDDEDQR-DVRRQLGEW------NIVQKDLIPILISYKD-DDKLFLACLRLLVNL 70 (266)
T ss_pred CHhHHHHHHHHHHHHHHhCcchH-HHHHHHHHh------chhhhhHHHHHHhccC-chHHHHHHHHHHHHh
Confidence 56677789999999999999887 555555543 1235689999888665 445555556666544
No 382
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=25.97 E-value=2e+02 Score=27.24 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCcc-hhhhHhhhhHhhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Q 008806 125 WYIPLVKRLAAGEWFT-ARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (553)
Q Consensus 125 ~~l~~l~~~~~~~~~~-~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~ 193 (553)
.++..+.++++.+.+. .-..|+.=++.+....++. .+-..-..+.+++++++++||-.|.+++..++..
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
No 383
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.77 E-value=4.5e+02 Score=25.58 Aligned_cols=64 Identities=13% Similarity=-0.024 Sum_probs=34.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhhhhhc-hhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 008806 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (553)
Q Consensus 360 ~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~-~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~ 423 (553)
..-++.++++....-|..++..++.....-+ ...-.+.+.+.+..++.|++..+|..++.+++.
T Consensus 9 ~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 9 DQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 3445555566666666555555554443333 222224555555666666666666666555543
No 384
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=24.44 E-value=3e+02 Score=21.04 Aligned_cols=52 Identities=19% Similarity=0.065 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHh---hhhhhhhhhhhh
Q 008806 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQKSHVLD 485 (553)
Q Consensus 434 ~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~---~~i~p~l~~~l~ 485 (553)
.+.++.++...++.-.++||.-+.+.|.-+.+.++..... ..+++....++.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 3456667777788888999999999999999988866222 356666666664
No 385
>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]
Probab=24.43 E-value=7.6e+02 Score=26.31 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhC--CChhHHHHHHHHHHHhh
Q 008806 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DQDSVRLLAVEGCAALG 230 (553)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d--~~~~vr~~a~~~l~~l~ 230 (553)
.++++.+...++++.--.--+.....+..+|+.-..+.-.+.++.++..-++| +.++.+...++.+..++
T Consensus 925 mdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~yy~h~L~div~Y~elKte~fQ~lRE~G 996 (1253)
T KOG3534|consen 925 MDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEYYHHHLKDIVEYPELKTEFFQSLREVG 996 (1253)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 35677777777777666555566677777776443343445666666655555 45566666666655554
No 386
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.38 E-value=3.4e+02 Score=24.34 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=29.9
Q ss_pred hhhhhhhh--cCCCcHHHHHHHHHHhhccccccCCcc----hhhcchhHHHhhhccchhHHHHHHHHHHHH
Q 008806 48 ELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGGVE----HAHVLLPPLETLCTVEETCVRDKAVESLCR 112 (553)
Q Consensus 48 ~ll~~l~~--~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~ 112 (553)
.+.|++.. -+.+-+..|..+...++.+++.-+.+- ...++.|++..+....+.--+..|+..++.
T Consensus 145 flypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qk 215 (315)
T COG5209 145 FLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQK 215 (315)
T ss_pred eeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455544 222334466666666666655322211 124566666555544433333344444433
No 387
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=24.32 E-value=4.4e+02 Score=22.27 Aligned_cols=111 Identities=10% Similarity=0.124 Sum_probs=65.5
Q ss_pred HHHHHHhhCCCC------hHHHHHHHHHHHHhhhh--hchhhHHhhHHHHHHHhhcCC--CcHHHHHHHHHHHHHHhhhC
Q 008806 360 LPIFLSLLKDEF------PDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLG 429 (553)
Q Consensus 360 ~p~l~~~l~d~~------~~VR~~a~~~l~~~~~~--~~~~~~~~~ll~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~ 429 (553)
++.+.+.+.++. .+.-..++.++..+.+. ++-+.+...++..+....+.+ +..+-+.++..+..++....
T Consensus 13 l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~ 92 (160)
T PF11841_consen 13 LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSP 92 (160)
T ss_pred HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCH
Confidence 445555554443 23444455555555552 233334455555555555433 56777788888887775321
Q ss_pred h--hhhHHH-HHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh
Q 008806 430 V--GFFDDK-LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 430 ~--~~~~~~-l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
. ..+.+. -++.+...+++.+.+++..|+..+..+....++.
T Consensus 93 ~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 93 KLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 1 111111 2566777888899999999999988888776543
No 388
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=24.31 E-value=4e+02 Score=21.85 Aligned_cols=100 Identities=13% Similarity=-0.010 Sum_probs=57.5
Q ss_pred HhhCCCChHHHHHHHHHHHHhhhhh-chhh-HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh-ChhhhHHH-HHHH
Q 008806 365 SLLKDEFPDVRLNIISKLDQVNQVI-GIDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFDDK-LGAL 440 (553)
Q Consensus 365 ~~l~d~~~~VR~~a~~~l~~~~~~~-~~~~-~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~-~~~~~~~~-l~~~ 440 (553)
+.-+..+.+.++....+|..+.--- ..+. .+-.++..+..-+..+|......++..+..+..-- ..+++.+. -+|.
T Consensus 24 efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~pl 103 (173)
T KOG4646|consen 24 EFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPL 103 (173)
T ss_pred HHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCce
Confidence 3334456777777777777775311 1111 12356666777777777777766666555443211 11122211 2466
Q ss_pred HHHHccCCchHHHHHHHHHHHHHH
Q 008806 441 CMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 441 l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
++..++++...+-..|+.++..+.
T Consensus 104 ii~~lssp~e~tv~sa~~~l~~l~ 127 (173)
T KOG4646|consen 104 IIFVLSSPPEITVHSAALFLQLLE 127 (173)
T ss_pred EEeecCCChHHHHHHHHHHHHHhc
Confidence 667788888888877777766554
No 389
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=23.82 E-value=9.4e+02 Score=25.96 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=10.0
Q ss_pred CCcHHHHHHHHHHHHhhhh
Q 008806 330 DSSQHVRSALASVIMGMAP 348 (553)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~ 348 (553)
..+.....++++.+.....
T Consensus 227 A~~~~~l~lli~L~~~~~~ 245 (696)
T PF14838_consen 227 AQNPEHLALLIRLYAGLSV 245 (696)
T ss_pred cCCHHHHHHHHHHHhcccC
Confidence 3445555555555555543
No 390
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=23.48 E-value=4.4e+02 Score=22.01 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhhHHHHHH
Q 008806 101 CVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131 (553)
Q Consensus 101 ~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~ 131 (553)
.+-..++.++..++-.+.+..+++.+..++.
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~d 66 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVD 66 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHH
Confidence 4455667777777777777676666555553
No 391
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.43 E-value=8e+02 Score=24.98 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=11.0
Q ss_pred HHHhhCCCChHHHHHHHHHHHHh
Q 008806 363 FLSLLKDEFPDVRLNIISKLDQV 385 (553)
Q Consensus 363 l~~~l~d~~~~VR~~a~~~l~~~ 385 (553)
++.++.|.+.++|+.+-.+|.-+
T Consensus 639 lIDLMHDkN~eiRkVCDn~LdIi 661 (791)
T KOG1222|consen 639 LIDLMHDKNAEIRKVCDNALDII 661 (791)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 34444555555555544444433
No 392
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=23.01 E-value=2.1e+02 Score=21.88 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=32.9
Q ss_pred hhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhh---hhHHHHHHHHhc
Q 008806 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV---DWYIPLVKRLAA 135 (553)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~~~ 135 (553)
...+...+....++=.+.||.-+...|.-+.++.|+.-+. ..+++-+..+++
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 3344555556666777888888888888888888776222 234444444443
No 393
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.88 E-value=6.6e+02 Score=23.09 Aligned_cols=187 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc-chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc
Q 008806 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD 280 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 280 (553)
.+-.++.++..++..--|.+.-.++..=....+. ....+.......+...|.++..---+...|+.+- ...
T Consensus 2 ~~~~il~~l~~~~~~~P~~al~~A~~~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r--------e~~ 73 (249)
T PF06685_consen 2 NIEEILEQLSYNDGEFPREALEAAIEQREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR--------EER 73 (249)
T ss_pred CHHHHHHHHHhccccCcHHHHHHHHHCHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh--------hhh
Q ss_pred hHHHHHHhcCCCcHH----HHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCc--HHHHHHHHHHHHhhhhh--hCH
Q 008806 281 LVPAYVRLLRDNEAE----VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS--QHVRSALASVIMGMAPL--LGK 352 (553)
Q Consensus 281 llp~l~~ll~d~~~~----vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~--~~vr~~~~~~l~~l~~~--~~~ 352 (553)
..|.++++++-++.. .-....+.++.+...++.... ..+.+++.+++ ..+|.+++.++..+... ..+
T Consensus 74 A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~-----~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~R 148 (249)
T PF06685_consen 74 ALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDI-----EPLKELIEDPDADEYVRMAAISALAFLVHEGPISR 148 (249)
T ss_pred hHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCH-----HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCH
Q ss_pred HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCC
Q 008806 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 409 (553)
Q Consensus 353 ~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~ 409 (553)
+...+.+..++...++.....+-...+.++..+.- .+++|.+.++..+.
T Consensus 149 e~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~--------~EL~~~I~~~f~~~ 197 (249)
T PF06685_consen 149 EEVIQYFRELLNYFLERNPSFLWGSLVADICDLYP--------EELLPEIRKAFEDG 197 (249)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCH--------HHhHHHHHHHHHcC
No 394
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.80 E-value=1.5e+03 Score=27.14 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=53.2
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhhChhh--hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh
Q 008806 406 AEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 406 ~~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
..+++...|..++..+..+...+|... ..+..+|.+-.++.|.+.+|-..+.+.+.++-+.+|+.
T Consensus 1550 trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1550 TRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred hccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchh
Confidence 456677899999999999998888764 45778899989999999999888888877777777754
No 395
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=20.24 E-value=4.8e+02 Score=22.05 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred HhHHHHHHHhhCCCChHHHHHHHHHHH--HhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh
Q 008806 357 EQLLPIFLSLLKDEFPDVRLNIISKLD--QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (553)
Q Consensus 357 ~~l~p~l~~~l~d~~~~VR~~a~~~l~--~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~ 431 (553)
+.+...+....+-.+..|-...+..+. .--+...-+.. ..++|.+..++.++.......++.++..+.+.+++.
T Consensus 28 ~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c-~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~ 103 (164)
T PF13925_consen 28 NDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLC-VDLLPLIEELLQSKYESYISVALEMLRSILKKFGPV 103 (164)
T ss_pred CcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Done!