Query 008806
Match_columns 553
No_of_seqs 285 out of 2151
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 12:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 5.2E-53 1.8E-57 443.6 53.7 538 3-541 4-548 (588)
2 1b3u_A Protein (protein phosph 100.0 4.1E-47 1.4E-51 398.7 41.5 476 16-492 94-575 (588)
3 4fdd_A Transportin-1; heat rep 100.0 2.2E-30 7.5E-35 282.5 51.5 531 10-545 129-746 (852)
4 4fdd_A Transportin-1; heat rep 100.0 2.2E-30 7.4E-35 282.6 48.6 521 19-545 58-662 (852)
5 1u6g_C TIP120 protein, CAND1; 100.0 5.6E-31 1.9E-35 298.2 41.3 528 11-544 50-682 (1230)
6 2bpt_A Importin beta-1 subunit 100.0 3.1E-30 1.1E-34 282.8 44.1 529 12-544 98-714 (861)
7 2bpt_A Importin beta-1 subunit 100.0 4.1E-29 1.4E-33 273.8 47.1 475 11-487 136-692 (861)
8 1u6g_C TIP120 protein, CAND1; 100.0 6.9E-30 2.4E-34 289.3 38.8 524 8-538 5-634 (1230)
9 1qgr_A Protein (importin beta 100.0 3.4E-28 1.2E-32 267.1 39.9 470 14-486 95-702 (876)
10 1qgr_A Protein (importin beta 100.0 7.9E-27 2.7E-31 256.2 50.2 474 10-485 129-744 (876)
11 1ibr_B P95, importin beta-1 su 99.9 7.1E-24 2.4E-28 215.1 32.1 378 10-391 2-441 (462)
12 1ibr_B P95, importin beta-1 su 99.9 2.5E-23 8.5E-28 211.1 32.2 397 49-470 3-442 (462)
13 2vgl_B AP-2 complex subunit be 99.9 1.2E-21 4.2E-26 203.4 35.4 437 9-469 49-497 (591)
14 2jdq_A Importin alpha-1 subuni 99.9 2E-21 6.9E-26 196.3 33.6 377 88-464 22-442 (450)
15 2vgl_B AP-2 complex subunit be 99.9 1E-20 3.4E-25 196.6 31.3 432 10-464 87-531 (591)
16 2z6h_A Catenin beta-1, beta-ca 99.9 4.8E-20 1.6E-24 194.2 36.2 461 10-470 15-532 (644)
17 2jdq_A Importin alpha-1 subuni 99.9 1.1E-20 3.7E-25 190.9 29.0 376 50-425 22-442 (450)
18 1wa5_B Importin alpha subunit; 99.9 3.1E-20 1.1E-24 191.3 32.3 380 87-466 88-511 (530)
19 2z6g_A B-catenin; FULL-length, 99.9 3.9E-20 1.3E-24 197.8 31.1 458 11-469 152-667 (780)
20 1wa5_B Importin alpha subunit; 99.9 5.9E-20 2E-24 189.2 29.8 378 48-426 87-510 (530)
21 2z6g_A B-catenin; FULL-length, 99.9 1.6E-19 5.3E-24 193.2 32.8 478 11-492 117-651 (780)
22 1jdh_A Beta-catenin; beta-cate 99.9 1.3E-19 4.5E-24 187.0 31.3 453 10-463 18-528 (529)
23 4b8j_A Importin subunit alpha- 99.9 3.4E-19 1.2E-23 183.6 30.9 380 87-466 75-497 (528)
24 3now_A UNC-45 protein, SD10334 99.9 3.6E-18 1.2E-22 178.1 38.3 464 23-487 218-762 (810)
25 3now_A UNC-45 protein, SD10334 99.8 2.7E-18 9.1E-23 179.1 35.4 447 16-466 254-783 (810)
26 4b8j_A Importin subunit alpha- 99.8 5.7E-19 2E-23 181.9 28.1 380 8-387 73-496 (528)
27 1jdh_A Beta-catenin; beta-cate 99.8 1.7E-18 5.7E-23 178.7 30.9 442 47-488 16-514 (529)
28 2z6h_A Catenin beta-1, beta-ca 99.8 1.6E-17 5.4E-22 175.0 35.3 446 47-492 13-515 (644)
29 1w63_A Adapter-related protein 99.8 1.5E-18 5.2E-23 180.8 26.4 439 7-468 68-543 (618)
30 1w63_A Adapter-related protein 99.8 1E-17 3.4E-22 174.6 32.1 434 10-465 108-577 (618)
31 1oyz_A Hypothetical protein YI 99.8 1.6E-17 5.5E-22 156.1 21.2 252 165-461 25-278 (280)
32 3ul1_B Importin subunit alpha- 99.8 5.2E-16 1.8E-20 158.3 33.7 377 88-464 59-477 (510)
33 3tpo_A Importin subunit alpha- 99.8 7.1E-16 2.4E-20 158.2 33.2 378 87-464 77-496 (529)
34 3ul1_B Importin subunit alpha- 99.8 1.8E-16 6.2E-21 161.6 28.6 377 10-386 58-477 (510)
35 3tpo_A Importin subunit alpha- 99.8 4.6E-16 1.6E-20 159.6 30.5 377 9-385 76-495 (529)
36 2vgl_A Adaptor protein complex 99.8 5.6E-16 1.9E-20 160.7 29.9 445 5-468 70-553 (621)
37 1oyz_A Hypothetical protein YI 99.7 1.3E-16 4.6E-21 149.7 22.2 252 127-422 25-278 (280)
38 2vgl_A Adaptor protein complex 99.7 7.5E-15 2.6E-19 152.3 33.4 434 10-464 112-588 (621)
39 1wa5_C Importin alpha RE-expor 99.7 3.1E-14 1.1E-18 156.7 39.1 471 13-486 39-652 (960)
40 1wa5_C Importin alpha RE-expor 99.7 2.4E-14 8.2E-19 157.7 35.0 452 13-467 89-672 (960)
41 2qk2_A LP04448P; mini spindles 99.7 3.6E-15 1.2E-19 136.5 21.4 203 236-480 10-219 (242)
42 2qk2_A LP04448P; mini spindles 99.7 4.3E-15 1.5E-19 136.0 20.9 199 314-516 10-219 (242)
43 3ltm_A Alpha-REP4; protein eng 99.7 4.5E-15 1.5E-19 132.9 19.3 189 240-468 18-206 (211)
44 3ltj_A Alpharep-4; protein eng 99.7 7.2E-15 2.5E-19 130.5 19.2 185 240-464 13-197 (201)
45 3ltm_A Alpha-REP4; protein eng 99.6 1.2E-14 4.2E-19 130.1 20.4 186 202-427 19-204 (211)
46 3ltj_A Alpharep-4; protein eng 99.6 2E-14 6.9E-19 127.5 20.7 183 202-424 14-196 (201)
47 2x19_B Importin-13; nuclear tr 99.6 1.8E-11 6.3E-16 135.3 42.6 440 21-468 115-652 (963)
48 2x1g_F Cadmus; transport prote 99.6 4.5E-12 1.6E-16 140.1 36.4 450 12-468 42-618 (971)
49 2x1g_F Cadmus; transport prote 99.6 3.9E-12 1.3E-16 140.6 35.8 402 21-430 97-619 (971)
50 2x19_B Importin-13; nuclear tr 99.6 3.4E-11 1.2E-15 133.1 41.0 415 46-468 102-602 (963)
51 2qk1_A Protein STU2; STU2P, XM 99.5 3.8E-13 1.3E-17 122.5 19.8 198 197-394 11-227 (249)
52 3m1i_C Exportin-1; heat repeat 99.5 4.2E-11 1.4E-15 133.0 40.3 453 7-469 14-622 (1049)
53 2qk1_A Protein STU2; STU2P, XM 99.5 4.4E-13 1.5E-17 122.1 18.4 188 282-470 18-225 (249)
54 4hxt_A De novo protein OR329; 99.5 4.1E-12 1.4E-16 116.9 22.2 226 243-468 4-244 (252)
55 3m1i_C Exportin-1; heat repeat 99.5 9.3E-11 3.2E-15 130.3 36.9 446 23-472 114-683 (1049)
56 4hxt_A De novo protein OR329; 99.5 3.8E-12 1.3E-16 117.2 21.8 231 165-431 4-246 (252)
57 4db8_A Armadillo-repeat protei 99.5 1.3E-12 4.3E-17 120.5 16.6 223 165-387 14-251 (252)
58 3l6x_A Catenin delta-1; cateni 99.5 5.6E-11 1.9E-15 120.0 29.4 302 164-465 91-476 (584)
59 3opb_A SWI5-dependent HO expre 99.4 1.1E-09 3.6E-14 112.5 37.7 450 11-465 170-728 (778)
60 1xm9_A Plakophilin 1; armadill 99.4 4.1E-11 1.4E-15 120.1 26.8 179 88-268 4-218 (457)
61 1lrv_A LRV, leucine-rich repea 99.4 1.7E-14 5.8E-19 129.2 1.7 187 169-461 56-242 (244)
62 1xm9_A Plakophilin 1; armadill 99.4 2.4E-11 8.1E-16 121.8 24.7 337 127-464 4-448 (457)
63 3l6x_A Catenin delta-1; cateni 99.4 2.8E-10 9.5E-15 115.0 32.1 342 85-426 47-476 (584)
64 4db8_A Armadillo-repeat protei 99.4 2.8E-12 9.4E-17 118.2 16.2 223 243-465 14-251 (252)
65 3ibv_A Exportin-T; karyopherin 99.4 1.4E-10 4.6E-15 126.3 31.7 469 10-485 7-588 (980)
66 4ady_A RPN2, 26S proteasome re 99.4 1.6E-10 5.6E-15 120.8 30.0 299 97-425 406-718 (963)
67 4hat_C Exportin-1; heat repeat 99.4 1.9E-09 6.6E-14 117.4 39.0 459 23-485 114-698 (1023)
68 4ady_A RPN2, 26S proteasome re 99.4 1.6E-10 5.5E-15 120.9 29.0 54 368-425 622-675 (963)
69 3ibv_A Exportin-T; karyopherin 99.4 7.9E-10 2.7E-14 120.3 34.7 455 10-468 41-631 (980)
70 4hat_C Exportin-1; heat repeat 99.4 1.5E-08 5E-13 110.5 43.8 447 20-471 60-624 (1023)
71 3nmz_A APC variant protein; pr 99.4 2.2E-10 7.5E-15 113.0 26.7 303 162-467 69-452 (458)
72 1lrv_A LRV, leucine-rich repea 99.4 1.5E-13 5E-18 123.1 2.9 187 92-383 56-242 (244)
73 3opb_A SWI5-dependent HO expre 99.3 4E-09 1.4E-13 108.2 32.9 359 126-486 256-708 (778)
74 3nmz_A APC variant protein; pr 99.3 6E-10 2E-14 110.0 25.2 243 144-388 167-451 (458)
75 4db6_A Armadillo repeat protei 99.3 1.3E-10 4.6E-15 103.5 18.9 187 279-465 11-209 (210)
76 2iw3_A Elongation factor 3A; a 99.3 1.9E-09 6.4E-14 114.5 28.2 281 103-390 31-327 (986)
77 4db6_A Armadillo repeat protei 99.2 2.2E-10 7.5E-15 102.1 16.8 186 162-347 11-208 (210)
78 3a6p_A Exportin-5; exportin-5, 99.2 4.4E-08 1.5E-12 109.5 36.4 456 6-470 8-618 (1204)
79 2iw3_A Elongation factor 3A; a 99.2 6.6E-09 2.3E-13 110.3 25.4 237 240-485 53-300 (986)
80 2db0_A 253AA long hypothetical 99.1 1.2E-07 4E-12 77.4 23.3 214 162-386 31-245 (253)
81 2of3_A ZYG-9; multifunctional 99.1 1.5E-08 5E-13 91.1 19.8 179 286-471 52-242 (266)
82 3tjz_B Coatomer subunit gamma; 99.1 3.8E-09 1.3E-13 99.7 16.8 293 154-463 59-351 (355)
83 3oc3_A Helicase MOT1, MOT1; re 99.1 3.1E-09 1.1E-13 102.1 16.0 255 164-461 175-432 (800)
84 3gjx_A Exportin-1; transport, 99.1 6.2E-07 2.1E-11 97.4 35.8 459 22-484 125-723 (1073)
85 3nmw_A APC variant protein; AR 99.1 1.1E-08 3.6E-13 97.9 19.6 217 254-470 97-339 (354)
86 2of3_A ZYG-9; multifunctional 99.0 1.4E-08 4.8E-13 91.2 18.2 175 134-314 55-241 (266)
87 3oc3_A Helicase MOT1, MOT1; re 99.0 1.9E-08 6.5E-13 96.8 18.8 254 11-305 176-432 (800)
88 2db0_A 253AA long hypothetical 99.0 4.8E-07 1.6E-11 73.8 23.9 215 240-465 31-246 (253)
89 3gjx_A Exportin-1; transport, 99.0 5.7E-06 1.9E-10 90.0 40.1 446 20-471 72-650 (1073)
90 3b2a_A TON_1937, putative unch 99.0 6.1E-08 2.1E-12 82.8 18.9 213 254-485 18-234 (265)
91 3nmw_A APC variant protein; AR 99.0 3.1E-08 1.1E-12 94.7 19.5 213 138-351 97-337 (354)
92 4ffb_C Protein STU2; tubulin f 99.0 1.6E-08 5.6E-13 94.0 16.8 183 285-470 14-217 (278)
93 1xqr_A HSPBP1 protein; armadil 99.0 3E-08 1E-12 92.2 17.8 186 280-466 28-239 (296)
94 3l9t_A Putative uncharacterize 99.0 9.1E-09 3.1E-13 89.0 13.0 139 200-349 69-208 (240)
95 1te4_A Conserved protein MTH18 98.9 2.5E-10 8.5E-15 93.0 1.4 120 318-462 11-130 (131)
96 3tjz_B Coatomer subunit gamma; 98.9 3.9E-08 1.3E-12 92.8 16.5 307 62-385 43-351 (355)
97 4ffb_C Protein STU2; tubulin f 98.9 4.8E-08 1.6E-12 90.9 16.9 183 246-431 14-217 (278)
98 3l9t_A Putative uncharacterize 98.9 8.2E-08 2.8E-12 83.1 16.2 139 123-271 69-208 (240)
99 3a6p_A Exportin-5; exportin-5, 98.9 4.1E-06 1.4E-10 93.7 34.2 422 21-447 108-682 (1204)
100 3b2a_A TON_1937, putative unch 98.9 7.1E-07 2.4E-11 76.3 21.2 184 162-349 32-219 (265)
101 1xqr_A HSPBP1 protein; armadil 98.9 5.1E-07 1.7E-11 83.9 22.4 170 257-427 56-239 (296)
102 1te4_A Conserved protein MTH18 98.8 7.7E-09 2.6E-13 84.0 6.8 120 124-267 11-130 (131)
103 1vsy_5 Proteasome activator BL 98.6 6.9E-07 2.3E-11 96.4 17.5 406 44-472 504-973 (997)
104 1vsy_5 Proteasome activator BL 98.1 0.00013 4.6E-09 78.8 19.4 309 154-467 499-875 (997)
105 3u0r_A Apoptosis inhibitor 5; 98.1 0.0016 5.4E-08 62.5 23.9 50 396-445 267-317 (507)
106 3u0r_A Apoptosis inhibitor 5; 98.0 0.0024 8.3E-08 61.2 24.2 258 99-367 41-317 (507)
107 3grl_A General vesicular trans 97.9 0.0027 9.2E-08 63.9 22.8 289 59-348 34-394 (651)
108 3grl_A General vesicular trans 97.9 0.0083 2.8E-07 60.4 26.0 226 241-466 122-395 (651)
109 4gmo_A Putative uncharacterize 97.8 0.053 1.8E-06 56.8 36.6 89 46-134 33-128 (684)
110 3tt9_A Plakophilin-2; cell adh 97.7 0.0013 4.5E-08 58.2 16.0 184 242-425 9-228 (233)
111 3tt9_A Plakophilin-2; cell adh 97.7 0.0013 4.6E-08 58.1 15.9 186 279-464 7-228 (233)
112 3gs3_A Symplekin, LD45768P; he 97.3 0.091 3.1E-06 46.9 21.9 143 281-427 17-174 (257)
113 1lsh_A Lipovitellin (LV-1N, LV 97.1 0.046 1.6E-06 60.2 22.1 173 242-430 392-580 (1056)
114 1lsh_A Lipovitellin (LV-1N, LV 96.8 0.1 3.5E-06 57.5 21.8 276 161-470 287-581 (1056)
115 4gmo_A Putative uncharacterize 96.6 0.0062 2.1E-07 63.9 9.9 31 436-466 182-215 (684)
116 1upk_A MO25 protein; transfera 96.2 0.38 1.3E-05 44.1 17.5 183 279-466 77-284 (341)
117 3o2t_A Symplekin; heat repeat, 96.1 0.99 3.4E-05 42.7 23.9 30 243-272 156-185 (386)
118 3gs3_A Symplekin, LD45768P; he 95.9 0.88 3E-05 40.5 22.5 129 218-349 31-174 (257)
119 4atg_A TAF6; transcription, TF 95.7 0.43 1.5E-05 40.3 14.3 151 165-329 13-178 (196)
120 4atg_A TAF6; transcription, TF 94.6 0.77 2.6E-05 38.7 12.8 109 373-488 23-144 (196)
121 2b6c_A Hypothetical protein EF 93.8 0.6 2.1E-05 40.7 11.2 131 128-271 58-189 (220)
122 3o2t_A Symplekin; heat repeat, 93.7 4.8 0.00016 38.1 29.2 143 202-348 26-183 (386)
123 3jxy_A Alkylpurine DNA glycosy 92.5 1.3 4.3E-05 39.0 11.3 159 128-305 64-223 (232)
124 2b6c_A Hypothetical protein EF 91.9 4.7 0.00016 35.0 14.2 131 205-349 58-189 (220)
125 3jxy_A Alkylpurine DNA glycosy 91.0 4.3 0.00015 35.6 13.1 158 205-383 64-223 (232)
126 3ldz_A STAM-1, signal transduc 90.9 2.2 7.4E-05 34.0 10.0 83 125-207 42-129 (140)
127 1x5b_A Signal transducing adap 87.9 4 0.00014 33.4 9.7 73 125-197 52-130 (163)
128 3ldz_A STAM-1, signal transduc 87.5 9.3 0.00032 30.2 12.2 70 359-428 43-116 (140)
129 3g2s_A C-terminal fragment of 86.8 5.2 0.00018 32.1 9.5 74 124-197 47-131 (149)
130 2fv2_A RCD1 required for cell 86.8 16 0.00054 32.1 14.9 72 82-153 97-173 (268)
131 3g2s_A C-terminal fragment of 86.2 12 0.0004 30.0 13.0 74 396-469 47-130 (149)
132 1upk_A MO25 protein; transfera 84.4 25 0.00085 32.3 20.2 182 201-388 77-284 (341)
133 1mhq_A ADP-ribosylation factor 84.0 15 0.00051 29.4 13.1 74 396-469 37-120 (148)
134 1juq_A ADP-ribosylation factor 83.9 17 0.00057 29.9 12.6 74 396-469 49-132 (171)
135 1elk_A Target of MYB1; superhe 80.4 20 0.00069 28.9 10.7 74 396-469 52-134 (157)
136 1x5b_A Signal transducing adap 79.9 23 0.00079 28.8 13.1 69 360-428 54-127 (163)
137 2jak_A Serine/threonine-protei 79.7 42 0.0014 31.7 18.3 208 251-460 139-362 (392)
138 3zyq_A Hepatocyte growth facto 79.5 30 0.001 29.9 13.2 98 327-430 20-122 (226)
139 1elk_A Target of MYB1; superhe 78.8 18 0.00062 29.2 9.9 74 124-197 52-135 (157)
140 2npp_B PP2A, B subunit, serine 76.2 58 0.002 31.5 19.1 209 11-231 164-399 (449)
141 3fga_B Serine/threonine-protei 69.7 77 0.0026 30.0 20.9 211 11-231 131-366 (403)
142 1dvp_A HRS, hepatocyte growth 63.3 61 0.0021 27.8 10.4 74 396-469 41-119 (220)
143 2npp_B PP2A, B subunit, serine 62.5 1.1E+02 0.0039 29.4 19.6 237 251-491 127-384 (449)
144 3fga_B Serine/threonine-protei 61.4 1.1E+02 0.0038 28.9 20.8 208 251-460 94-317 (403)
145 3dad_A FH1/FH2 domain-containi 59.0 1.1E+02 0.0038 28.1 17.8 119 361-479 163-300 (339)
146 1juq_A ADP-ribosylation factor 56.6 80 0.0028 25.8 14.7 98 327-430 25-132 (171)
147 3zyq_A Hepatocyte growth facto 56.4 97 0.0033 26.7 13.1 97 251-353 22-123 (226)
148 1vsy_4 Proteasome activator BL 55.6 2.1E+02 0.007 30.2 20.2 105 13-118 343-458 (799)
149 1mhq_A ADP-ribosylation factor 55.4 77 0.0026 25.2 15.1 98 327-430 13-120 (148)
150 3ut4_A CTHE_2751, putative unc 54.6 73 0.0025 24.7 10.8 84 312-409 25-108 (134)
151 1w9c_A CRM1 protein, exportin 51.4 1.5E+02 0.005 27.2 21.9 154 295-449 44-228 (321)
152 3ut4_A CTHE_2751, putative unc 49.5 90 0.0031 24.2 8.3 84 157-253 25-108 (134)
153 2fv2_A RCD1 required for cell 49.1 1.4E+02 0.0047 26.3 10.3 24 443-466 202-225 (268)
154 1vdy_A Hypothetical protein (R 48.2 54 0.0019 25.7 6.6 69 402-471 16-84 (140)
155 1vdy_A Hypothetical protein (R 47.8 79 0.0027 24.8 7.5 32 161-192 47-78 (140)
156 1t06_A Hypothetical protein; s 46.1 1.5E+02 0.005 25.7 13.4 69 203-271 109-181 (235)
157 1t06_A Hypothetical protein; s 45.1 66 0.0023 27.9 7.6 69 126-194 109-182 (235)
158 1vsy_4 Proteasome activator BL 41.6 3.4E+02 0.011 28.6 29.7 298 160-467 336-689 (799)
159 3rru_A TOM1L1 protein; structu 39.2 1.4E+02 0.0047 23.8 7.9 22 98-119 113-134 (152)
160 1dvp_A HRS, hepatocyte growth 38.8 1.8E+02 0.0062 24.7 13.2 98 327-430 17-119 (220)
161 1w9c_A CRM1 protein, exportin 38.3 2.3E+02 0.008 25.8 18.3 135 333-468 43-199 (321)
162 3dad_A FH1/FH2 domain-containi 32.7 3E+02 0.01 25.3 17.3 108 322-429 163-289 (339)
163 3bwt_A Protein PUF4; pumilio, 32.0 2.9E+02 0.01 25.1 12.8 12 440-451 274-285 (333)
164 2jak_A Serine/threonine-protei 25.9 4.2E+02 0.014 24.9 16.5 30 11-40 176-205 (392)
165 1p9i_A Cortexillin I/GCN4 hybr 25.6 77 0.0026 16.4 2.6 28 9-36 2-29 (31)
166 2jtt_C Calcyclin-binding prote 25.4 62 0.0021 18.4 2.5 25 164-188 8-32 (35)
167 3rru_A TOM1L1 protein; structu 23.8 2.7E+02 0.0094 22.0 8.6 97 251-353 30-135 (152)
168 4f52_E Glomulin; cullin-ring E 23.0 5.9E+02 0.02 25.6 11.1 93 389-482 309-411 (596)
169 1sz9_A PCF11 protein; RNA poly 20.7 3.1E+02 0.011 21.5 9.6 97 376-474 24-130 (144)
170 3gvo_A Pumilio 2, pumilio homo 20.1 5.1E+02 0.017 23.7 17.7 16 317-332 201-216 (351)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=5.2e-53 Score=443.62 Aligned_cols=538 Identities=56% Similarity=0.878 Sum_probs=481.9
Q ss_pred CCCCCcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcc
Q 008806 3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE 82 (553)
Q Consensus 3 ~~~~~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 82 (553)
..||.+++|..++..|+|+|+.+|..|++.++.++..+|++..+++++|++....|+++++|..++..|+.+.+.+++..
T Consensus 4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~ 83 (588)
T 1b3u_A 4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE 83 (588)
T ss_dssp CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence 45788999999999999999999999999999999999999889999999988668899999999999999998888777
Q ss_pred hhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHH
Q 008806 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162 (553)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 162 (553)
+...+++.+..+..++++.||..|+.++..++..++++...+.++|.+.++.+++++.+|..++.+++.++.+.+....+
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~ 163 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88899999999888999999999999999999999988888889999999999999999999999999999999988889
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhch
Q 008806 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 242 (553)
Q Consensus 163 ~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (553)
.+++.+.++++|+++.||..++++++.++...+++...+.++|.+..+++|+++.||..|+.+++.++..++.+...+.+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999887777889999999999999999999999999999988887777889
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHH
Q 008806 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQ 318 (553)
Q Consensus 243 l~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~ 318 (553)
+|.+..+++|++|.+|.+++++++.++..++.+...+.++|.+.++++|+++.||.+|+.+++.++..++.+ .+.+
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 999999999999999999999999999988766555679999999999999999999999999999988765 5578
Q ss_pred hHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhH
Q 008806 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (553)
Q Consensus 319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~l 398 (553)
.++|.+..+++|++|.||.+++.+++.++..+|.+...+.++|.+..+++|++++||..++.+++.++..+|.+...+.+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999999999999999999999999999988777889999999999999999999999999999998887766889
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhh
Q 008806 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 478 (553)
Q Consensus 399 l~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p 478 (553)
+|.+..+..|++|++|.+++.+++.++..+|.+.+.+.++|.+..++.|++..||..|+.+++.++..+|+++..+.++|
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999887788999
Q ss_pred hhhhhhhhhcccccchhhhhhhhhH--HHH-HHHhhhhhhhhhhhhhcccchhhhhHHHHHHHHHh
Q 008806 479 QKSHVLDCCQWSLMHQKTEYLTSSL--MWQ-KCYSLSFPLLTSLWWRKQSVPVWLSSLRIQMLMSV 541 (553)
Q Consensus 479 ~l~~~l~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~p~~~~~~~~~~~~pv~~~~~~~~~~~~~ 541 (553)
.+.....+++|..+......++.-. +.. .....++|.+...+ ++..-.||..+.++++...-
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA-GDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGG-GCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhC-CCCCchHHHHHHHHHHHHHH
Confidence 9988887777765433333222200 100 12345677776655 45667899999999988553
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=4.1e-47 Score=398.73 Aligned_cols=476 Identities=19% Similarity=0.254 Sum_probs=432.3
Q ss_pred HHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhh
Q 008806 16 DELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL 94 (553)
Q Consensus 16 ~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l 94 (553)
..+.++++.+|..|+..|+.++..++++..++.++|.+.. ..++++.+|..++..++.+....+. .....+.|.+..+
T Consensus 94 ~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l 172 (588)
T 1b3u_A 94 SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNL 172 (588)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHH
Confidence 3346889999999999999999988888778889999988 6777889999999999998877664 4567789999899
Q ss_pred hccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-HHHHHHHHHHHhcC
Q 008806 95 CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQ 173 (553)
Q Consensus 95 ~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~l~~ll~ 173 (553)
.+|+++.||..++.+++.+++.++.+.....++|.+..+.+|+++.+|..++..++.++...+++ ..+.++|.+.++++
T Consensus 173 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 252 (588)
T 1b3u_A 173 CSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE 252 (588)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999887777889999999999999999999999999999888776 66778999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc----hhhhchHHHHHHh
Q 008806 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNF 249 (553)
Q Consensus 174 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l 249 (553)
|++|.||..++.+++.++...+++...+.++|.+..+++|+++.||..++.+++.++..++.+ .+.+.++|.+..+
T Consensus 253 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 253 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332 (588)
T ss_dssp CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999998877777889999999999999999999999999999988775 4567899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhcc
Q 008806 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329 (553)
Q Consensus 250 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 329 (553)
++|++|.||.+++.+++.++..+|.+...+.++|.+..+++|++++||.+++.+++.+...++.+...+.++|.+..++.
T Consensus 333 l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~ 412 (588)
T 1b3u_A 333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412 (588)
T ss_dssp HTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988876555679999999999999999999999999999998887777889999999999
Q ss_pred CCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCC
Q 008806 330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 409 (553)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~ 409 (553)
|++|++|..++.+++.++..+|.+.+.+.++|.+...++|+++.||+.++.+++.++..+|.++..+.++|.+..+..|+
T Consensus 413 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~ 492 (588)
T 1b3u_A 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS
T ss_pred CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998877778999999999999999999999999999999998877788999999999999
Q ss_pred CcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhhhhcc
Q 008806 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLDCCQW 489 (553)
Q Consensus 410 ~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~~~~~ 489 (553)
+|.+|.+++.+++.++..+|.+.+.+.++|.+...+.|++++||..++++++.+...+|.++..+.+.|.+..+.+|.++
T Consensus 493 ~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~ 572 (588)
T 1b3u_A 493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 572 (588)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCch
Confidence 99999999999999999999888888999999999999999999999999999999999887667899999888777766
Q ss_pred ccc
Q 008806 490 SLM 492 (553)
Q Consensus 490 ~~~ 492 (553)
..+
T Consensus 573 ~vr 575 (588)
T 1b3u_A 573 DVK 575 (588)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.2e-30 Score=282.55 Aligned_cols=531 Identities=16% Similarity=0.123 Sum_probs=397.0
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHH-------hhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCc
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT-------RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV 81 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~-------~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~ 81 (553)
-+..++..+.++++.+|..|+..++.+++..++... .+.++|.+.+ +.+++++||..++.++..++...+..
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 477788889999999999999999999988765422 3567777777 78889999999999999887643321
Q ss_pred --chhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChh--hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCC
Q 008806 82 --EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157 (553)
Q Consensus 82 --~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~ 157 (553)
.....+++.+..+.+|+++.+|..++.++..+++..+.. .....+++.+.+..+|++..+|..+++.+..+++...
T Consensus 209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~ 288 (852)
T 4fdd_A 209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 288 (852)
T ss_dssp HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh
Confidence 223356666777778999999999999999999876532 1223478888888899999999999999988876432
Q ss_pred h-----HHHHHHHHHHHHhc-----------CC-----------CCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHh
Q 008806 158 D-----ILKTELRSIYTQLC-----------QD-----------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 210 (553)
Q Consensus 158 ~-----~~~~~l~~~l~~ll-----------~d-----------~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~ 210 (553)
. .+...+++.+.+.+ .| .+|.||++++.+++.++...+ +.+.+.++|.+.+.
T Consensus 289 ~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 289 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKEL 367 (852)
T ss_dssp HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHH
Confidence 1 14567788887776 44 567899999999999999987 56777899999999
Q ss_pred hhCCChhHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHH
Q 008806 211 TQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAY 285 (553)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~llp~l 285 (553)
+++++|.+|.+|+.+++.+++..+.. .+.+.++|.+...++|+++.||..++.+++.++..++.. .+...+++.+
T Consensus 368 l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L 447 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL 447 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999876542 345678999999999999999999999999999876532 2335688999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh----HHHhH
Q 008806 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----TIEQL 359 (553)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l 359 (553)
.+.+.|+++.||.+|+.+++.+++..+.. .+.+.+++.+...+++.+......++.+++.++...|+.. +.+.+
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l 527 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQML 527 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHH
Confidence 99999999999999999999999877653 2456777777777777777777778888888887766543 56778
Q ss_pred HHHHH---HhhCCCChHHHHHHHHHHHHhhhhhchhhH--HhhHHHHHHHhhc-----------------CCCcHHHHHH
Q 008806 360 LPIFL---SLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE-----------------DRHWRVRLAI 417 (553)
Q Consensus 360 ~p~l~---~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~--~~~ll~~l~~~~~-----------------d~~~~vR~~~ 417 (553)
+|.+. ..+.|.++++| .++++++.++..+|.... .+.+++.+...+. .++..+|..+
T Consensus 528 ~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 606 (852)
T 4fdd_A 528 MPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 606 (852)
T ss_dssp HHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred HHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence 88877 45678888886 789999999999887542 2444443332221 2366799999
Q ss_pred HHHHHHHHhhhChhhh--H--HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHh--hhhhhhhhhhhhhhcccc
Q 008806 418 IEYIPLLASQLGVGFF--D--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQKSHVLDCCQWSL 491 (553)
Q Consensus 418 ~~~l~~i~~~~~~~~~--~--~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~--~~i~p~l~~~l~~~~~~~ 491 (553)
+.+++.++..+|.+.. . ..+++.+..++.|+.+.||+.+..+++.++..++.++.. +.++|.+.+.+.......
T Consensus 607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v 686 (852)
T 4fdd_A 607 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV 686 (852)
T ss_dssp HHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHH
T ss_pred HHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHH
Confidence 9999999999986532 1 357899999999999999999999999999998865433 567787777775433222
Q ss_pred cchhhhhhhhhHHHHHH-------Hhhhhhhhhhhhhhcccc--hhhhhHHHHHHHHHhhccC
Q 008806 492 MHQKTEYLTSSLMWQKC-------YSLSFPLLTSLWWRKQSV--PVWLSSLRIQMLMSVFLPL 545 (553)
Q Consensus 492 ~~~~~~~~~~~~~~~~~-------~~~~~p~~~~~~~~~~~~--pv~~~~~~~~~~~~~~~~~ 545 (553)
+......+ +.+.... ...+.|.+...+.. .-. .++-.+..|+|..+-..|.
T Consensus 687 ~~~a~~al--g~i~~~~~~~~~p~~~~il~~L~~~l~~-~~~~~~~~~~a~~~igrl~~~~~~ 746 (852)
T 4fdd_A 687 CNNATWAI--GEISIQMGIEMQPYIPMVLHQLVEIINR-PNTPKTLLENTAITIGRLGYVCPQ 746 (852)
T ss_dssp HHHHHHHH--HHHHHHHGGGGGGGTHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHH--HHHHHHhhHhHHHHHHHHHHHHHHHhCC-CCCCchHHHHHHHHHHHHHHhCHH
Confidence 22111111 2222221 12233333333332 222 5777888888888877664
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.2e-30 Score=282.60 Aligned_cols=521 Identities=16% Similarity=0.104 Sum_probs=386.6
Q ss_pred cCccHHHHHHHhhhHHHHHHh-hC--hHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhh
Q 008806 19 KNDDIQLRLNSIRRLSTIARA-LG--EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL 94 (553)
Q Consensus 19 ~~~d~~~R~~a~~~l~~i~~~-~~--~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l 94 (553)
.+.+..+|+.|+-.|...... .. +++.+..+.+.+.+ +.++++.+|..++.+++.+++.. ....|..+++.+...
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~ 136 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG-ELQNWPDLLPKLCSL 136 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHH
Confidence 445555555555544433211 10 12234455555555 67888999999999999998764 345788899998888
Q ss_pred hccchhHHHHHHHHHHHHHHhhcChhhh-------hhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH---HHHHH
Q 008806 95 CTVEETCVRDKAVESLCRIGSQMRESDL-------VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTEL 164 (553)
Q Consensus 95 ~~~~~~~vR~~a~~~l~~l~~~~~~~~~-------~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l 164 (553)
.+++++.+|..++.+++.+++..+.... ...++|.+.+.++++++.+|..++..++.+....+.. ....+
T Consensus 137 l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~ 216 (852)
T 4fdd_A 137 LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 216 (852)
T ss_dssp HSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 8888899999999999999988765321 3457888888888999999999999999887765544 44678
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch--hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc----chh
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDC 238 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~ 238 (553)
++.+.+++.|+++.||+.++++|+.+++..+.. ...+.+++.+...+.|.++.||..|++.+..+++.... ...
T Consensus 217 l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~ 296 (852)
T 4fdd_A 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH 296 (852)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 899999999999999999999999999876531 23456888888889999999999999999998864211 123
Q ss_pred hhchHHHHHHhc-----------CC-----------CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHH
Q 008806 239 VAHILPVIVNFS-----------QD-----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEV 296 (553)
Q Consensus 239 ~~~ll~~l~~l~-----------~d-----------~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~v 296 (553)
...++|.+.+.+ .| .+|.+|.+++.+++.++..+|+. ..+.++|.+.+.+.|+++.+
T Consensus 297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~ 375 (852)
T 4fdd_A 297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVV 375 (852)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHH
Confidence 445777776655 34 67899999999999999998854 34678999999999999999
Q ss_pred HHHHHHHHHHHHHhhCHH--HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH---hHHHhHHHHHHHhhCCCC
Q 008806 297 RIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEF 371 (553)
Q Consensus 297 r~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~ 371 (553)
|.+|+.+++.+++..+.. ...+.++|.+...++|+++.||.+++.+++.++..++.. .....++|.+.+.++|++
T Consensus 376 R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 376 KESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 999999999998765432 235778899999999999999999999999999877542 345678899999999999
Q ss_pred hHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh----hHHHHHHHHH---
Q 008806 372 PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCM--- 442 (553)
Q Consensus 372 ~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~----~~~~l~~~l~--- 442 (553)
+.||..|+.+++.+++..+.+. +.+.+++.|...+++.+......++.+++.++...|... +.+.++|.+.
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~ 535 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 535 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 9999999999999998877643 337788888888877777777788899999988776543 6677888777
Q ss_pred HHccCCchHHHHHHHHHHHHHHHHhChhHH--hhhhhhhhhhhhhhh-----------------cccccchhhhhhhhhH
Q 008806 443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQKSHVLDCC-----------------QWSLMHQKTEYLTSSL 503 (553)
Q Consensus 443 ~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~p~l~~~l~~~-----------------~~~~~~~~~~~~~~~~ 503 (553)
..+.|.+..+| .++++++.++..+|..+. .+.+++.+...+... +...+......++.
T Consensus 536 ~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~-- 612 (852)
T 4fdd_A 536 NMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSG-- 612 (852)
T ss_dssp HHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHH--
T ss_pred HhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHH--
Confidence 45678788886 899999999999997654 245556555554321 00000000111111
Q ss_pred HHHHHH---------hhhhhhhhhhhhhcccchhhhhHHHHHHHHHhhccC
Q 008806 504 MWQKCY---------SLSFPLLTSLWWRKQSVPVWLSSLRIQMLMSVFLPL 545 (553)
Q Consensus 504 ~~~~~~---------~~~~p~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~ 545 (553)
+....- +.+.|.+...+ .++.-.||.++..+++-.+-+.+.
T Consensus 613 l~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~ 662 (852)
T 4fdd_A 613 LAEGLGGNIEQLVARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKACFQ 662 (852)
T ss_dssp HHHHHGGGGHHHHHTCCHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhHhHHHHhcCCcHHHHHHHHh-CCCChhHHHHHHHHHHHHHHHhhH
Confidence 111111 23455555544 446678999999999987766653
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=5.6e-31 Score=298.18 Aligned_cols=528 Identities=13% Similarity=0.151 Sum_probs=401.6
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCc--------
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV-------- 81 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~-------- 81 (553)
+..++..|.++++.+|..|+..++.++...++ ...+.+++.+.. +.|+++.+|..++.+++.++...+.+
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 56688889999999999999999999887765 456788888888 78888999999999999998877654
Q ss_pred chhhcchhHHHhhhc-cchhHHHHHHHHHHHHHHhhcChh--hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCCh
Q 008806 82 EHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (553)
Q Consensus 82 ~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 158 (553)
.++..++|.+..... +++..+|..++.++..+++..+.. ...+.+++.+...+.++++.+|..++.+++.++...++
T Consensus 129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence 367889998888777 478899999999999999765542 12355777777788888899999999999999988876
Q ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhhCch--hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc
Q 008806 159 ILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 235 (553)
Q Consensus 159 ~~~~~l~~~l~~ll~-d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (553)
...+.+++.+.+.+. +.++.+|..++.+++.++...+.. ...+.++|.+.+.++|+++.+|..++.+++.++..++.
T Consensus 209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 644555555555443 334578999999999999987752 23467999999999999999999999999999988776
Q ss_pred c--hhhhchHHHHHHhcC-------------------------------------CCCHHHHHHHHHHHHHHHHHhCC--
Q 008806 236 Q--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP-- 274 (553)
Q Consensus 236 ~--~~~~~ll~~l~~l~~-------------------------------------d~~~~vR~~~~~~l~~l~~~~~~-- 274 (553)
+ .+.+.++|.+.+.+. |.+|.+|.+++.+++.++...+.
T Consensus 289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 4 245566776655331 23588999999999999986554
Q ss_pred CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---------------------HHHHHhHHHHHHHhccCCcH
Q 008806 275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKELSSDSSQ 333 (553)
Q Consensus 275 ~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---------------------~~~~~~l~~~l~~l~~d~~~ 333 (553)
..+.+.++|.+...++|.+.+||.+++.++..+....+. +...+.++|.+.+.++|++|
T Consensus 369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 123457889999999999999999999999988876542 23345667777777999999
Q ss_pred HHHHHHHHHHHhhhhhhCHH--hHHHhHHHHHHHhhCCCCh--HHHHHHHHHHHHhhhhhchhh---HHhhHHHHHHHhh
Q 008806 334 HVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA 406 (553)
Q Consensus 334 ~vr~~~~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~--~VR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~~~ 406 (553)
++|.+++.+++.++...+.. ...+.++|.+...++|..+ .+|..++..+..+....|++. +.+.++|.+...+
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l 528 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV 528 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999998875432 2367889999999999865 899999999999988777763 3367899999999
Q ss_pred cCCCcHHHHHHHHHHHHHHhhhCh---------hhhHHHHHHHHHHHc--cCCchHHHHHHHHHHHHHHHHhChhHHh--
Q 008806 407 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWAM-- 473 (553)
Q Consensus 407 ~d~~~~vR~~~~~~l~~i~~~~~~---------~~~~~~l~~~l~~~l--~D~~~~VR~~a~~~l~~l~~~~~~~~~~-- 473 (553)
.|+++++|..++.+++.+++.+|. ..+.+.++|.++..+ .|.+.+||..++.++|.++...|..+..
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~ 608 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 608 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence 999999999999999999998876 246678999999888 7889999999999999999999876432
Q ss_pred hhhhhhhhhhhhhhcccccchhhhhhhhhHHH--------HHHHhhhhhhhhhhhhhcccchhhhhHHHHHHHHHhhcc
Q 008806 474 QHITPQKSHVLDCCQWSLMHQKTEYLTSSLMW--------QKCYSLSFPLLTSLWWRKQSVPVWLSSLRIQMLMSVFLP 544 (553)
Q Consensus 474 ~~i~p~l~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~p~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~ 544 (553)
..++|.|.+.+.+...| ......++ .++ ......++|.+...+.+ .-..+|.++..+++...-.+|
T Consensus 609 ~~~l~~L~~~l~~e~~r--~~~~~al~--~i~~~~~~~~~~~~~~~i~~~L~~~l~~-~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 609 PNTLQIFLERLKNEITR--LTTVKALT--LIAGSPLKIDLRPVLGEGVPILASFLRK-NQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHHHHHHHHTTSSSHH--HHHHHHHH--HHTTCSSCCCCHHHHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccchhH--HHHHHHHH--HHHhCccccchHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhccc
Confidence 45566555555432111 01111110 000 11245566666665543 445788888888877655554
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.1e-30 Score=282.76 Aligned_cols=529 Identities=11% Similarity=0.096 Sum_probs=402.2
Q ss_pred HHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCC-cHHHHHHHHHHhhccccccCCc-----chh
Q 008806 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGV-----EHA 84 (553)
Q Consensus 12 ~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~-~~~vr~~~~~~l~~l~~~~~~~-----~~~ 84 (553)
..++..|.++++.+|..++..++.++....|...|++++|.+.+ +.++ ++.+|..+..+++.+++..+.+ .+.
T Consensus 98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 177 (861)
T 2bpt_A 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence 45678888999999999999999999887776568999999999 7777 8999999999999888765432 355
Q ss_pred hcchhHHHhhhccc--hhHHHHHHHHHHHHHHhhcChh----hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCCh
Q 008806 85 HVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (553)
Q Consensus 85 ~~l~~~l~~l~~~~--~~~vR~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 158 (553)
..+++.+...+.++ ++.||..+++++..++..+... ....++++.+.....++++.+|..++.+++.++...+.
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777776 7899999999999987655422 22356888888888999999999999999888765443
Q ss_pred H---HHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc-------------------hhhhhhHHHHHHHhhhC--
Q 008806 159 I---LKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------------------AHLKTDIMSIFEDLTQD-- 213 (553)
Q Consensus 159 ~---~~~-~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~-------------------~~~~~~l~p~l~~~~~d-- 213 (553)
. +.. .+++.+...+.|.+..||..++..+..++..... ......++|.+...+.+
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 444 7888888999999999999999999998876310 11235677887776653
Q ss_pred -----CChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHH
Q 008806 214 -----DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAY 285 (553)
Q Consensus 214 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~llp~l 285 (553)
+++.+|.++..++..++..++. ...+.++|.+.+.+++.+|.+|.+++.+++.++...+.+. ..+.++|.+
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999988773 4456789999999999999999999999999886543111 123578889
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCH----HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH---H---hH
Q 008806 286 VRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---D---AT 355 (553)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~---~~ 355 (553)
.+.++|+++.||.+++.+++.++..+++ ..+.+.++|.+...+.|+ +.||..++.++..+++.++. . .+
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 9999999999999999999999988754 345678889888888886 99999999999999988762 1 23
Q ss_pred HHhHHHHHHHhhC--CCChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcC---------------CCcHHHHH
Q 008806 356 IEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED---------------RHWRVRLA 416 (553)
Q Consensus 356 ~~~l~p~l~~~l~--d~~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d---------------~~~~vR~~ 416 (553)
.+.+++.+...++ |.++.||..++.+++.++...|.+. +...++|.+.+.+.+ ....+|..
T Consensus 496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 5677888888887 4447899999999999999887653 224566666555432 24568889
Q ss_pred HHHHHHHHHhhhChh--hhHHHHHHHHHHHccCCch-HHHHHHHHHHHHHHHHhChhHH--hhhhhhhhhhhhhhhcccc
Q 008806 417 IIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEFGPEWA--MQHITPQKSHVLDCCQWSL 491 (553)
Q Consensus 417 ~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D~~~-~VR~~a~~~l~~l~~~~~~~~~--~~~i~p~l~~~l~~~~~~~ 491 (553)
++.+++.++..+|.. .+.+.++|.+...+++... .||..++.+++.++...|.++. .+.++|.+...+++.++..
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v 655 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV 655 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHH
Confidence 999999999988875 4567788999998888777 8999999999999999887654 3678888888887655554
Q ss_pred cchhhhhhhhhHHHHHH-------Hhhhhhhhhhhhhhcc-cchhhhhHHHHHHHHHhhcc
Q 008806 492 MHQKTEYLTSSLMWQKC-------YSLSFPLLTSLWWRKQ-SVPVWLSSLRIQMLMSVFLP 544 (553)
Q Consensus 492 ~~~~~~~~~~~~~~~~~-------~~~~~p~~~~~~~~~~-~~pv~~~~~~~~~~~~~~~~ 544 (553)
+......++. +...+ ...+.|.+...+.+.. -..+|.++.++++..+-..+
T Consensus 656 r~~a~~~l~~--l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~ 714 (861)
T 2bpt_A 656 SITAVGFIAD--ISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp HHHHHHHHHH--HHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHH--HHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh
Confidence 4333332221 11111 2233444444443321 14689999998887665544
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=4.1e-29 Score=273.83 Aligned_cols=475 Identities=14% Similarity=0.160 Sum_probs=376.9
Q ss_pred HHHHHHHhcCc-cHHHHHHHhhhHHHHHHhhChH-----HHhhhhhhhhhh-cCCC--cHHHHHHHHHHhhccccccCC-
Q 008806 11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGG- 80 (553)
Q Consensus 11 i~~ll~~L~~~-d~~~R~~a~~~l~~i~~~~~~~-----~~~~~ll~~l~~-~~d~--~~~vr~~~~~~l~~l~~~~~~- 80 (553)
+..++..+.++ ++.+|..|+..+..+++.++++ ...+.+++.+.. +.|+ +++||..+.++++.++..++.
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 215 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888 9999999999999999877653 245677777776 6666 799999999999987654432
Q ss_pred ---cchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChh--hhhh-hHHHHHHHHhcCCCcchhhhHhhhhHhhcC
Q 008806 81 ---VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVD-WYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (553)
Q Consensus 81 ---~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~-~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~ 154 (553)
...+..+++.+.....++++.+|..+++++..+++..++. .... .+++.+.....|.+..+|..+++.+..++.
T Consensus 216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 295 (861)
T 2bpt_A 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 1123457777777778889999999999999999876542 1122 567777788888899999999998887765
Q ss_pred CC--------------------ChHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHH
Q 008806 155 SA--------------------PDILKTELRSIYTQLCQD-------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207 (553)
Q Consensus 155 ~~--------------------~~~~~~~l~~~l~~ll~d-------~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l 207 (553)
.. .......+++.+...+.+ +++.+|..+..+++.++..++ +.....++|.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l 374 (861)
T 2bpt_A 296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFV 374 (861)
T ss_dssp HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHH
T ss_pred HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHH
Confidence 42 112446788888877653 458999999999999999888 45667888999
Q ss_pred HHhhhCCChhHHHHHHHHHHHhhccCCcc---hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC----ccccc
Q 008806 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMD 280 (553)
Q Consensus 208 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~ 280 (553)
.+.+++.+|.+|.+|+.+++.+++..+.+ ...+.++|.+...+.|+++.||.+++.+++.++..++.. ...+.
T Consensus 375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 99999999999999999999999876632 234568888999999999999999999999999987642 23457
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---H---HHHHhHHHHHHHhcc--CCcHHHHHHHHHHHHhhhhhhCH
Q 008806 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---E---LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK 352 (553)
Q Consensus 281 llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~l~~~l~~l~~--d~~~~vr~~~~~~l~~l~~~~~~ 352 (553)
++|.+.+.++|+ +.||.+|+.++..+++.++. + .+.+.+++.+...+. |.++.+|..++.+++.++...+.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 899999999887 89999999999999987651 1 334677788888776 45589999999999999998886
Q ss_pred Hh--HHHhHHHHHHHhhCC---------------CChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCCCc-H
Q 008806 353 DA--TIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHW-R 412 (553)
Q Consensus 353 ~~--~~~~l~p~l~~~l~d---------------~~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~~~-~ 412 (553)
.. ....++|.+.+.+.+ ....+|..++.+++.++..+|.+. +.+.+++.+...+++.++ .
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence 53 244566766666642 245689999999999999888753 346788888888888877 8
Q ss_pred HHHHHHHHHHHHHhhhChhh--hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHH--hhhhhhhhhhhhhhh
Q 008806 413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQKSHVLDCC 487 (553)
Q Consensus 413 vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~p~l~~~l~~~ 487 (553)
+|..++.+++.++...|.+. +.+.++|.+...+++++..+|..++.+++.+++.+|..+. ...++|.+.+.+.+.
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 692 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP 692 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc
Confidence 99999999999999888753 5677999999999999999999999999999999986543 256777777777654
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.98 E-value=6.9e-30 Score=289.27 Aligned_cols=524 Identities=12% Similarity=0.141 Sum_probs=394.1
Q ss_pred cCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhC---hHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcch
Q 008806 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (553)
Q Consensus 8 ~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~---~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 83 (553)
.+.+..+++++.++|+++|.+|...|....+.-. .+...+.+++.+.+ +.|.++++|..++.+++.+++..+. .+
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence 3568999999999999999999888876532110 11234466666666 7789999999999999999886654 55
Q ss_pred hhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChh--------hhhhhHHHHHHHHhc-CCCcchhhhHhhhhHhhcC
Q 008806 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYP 154 (553)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~ 154 (553)
...+++.+...+.|+++.+|..++.+++.++..++++ ...+.++|.+...++ ++++.+|..++.+++.+..
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 6677777777777888899999999999999988765 256779999999888 4788999999999998875
Q ss_pred CCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhC-CChhHHHHHHHHHHHhh
Q 008806 155 SAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALG 230 (553)
Q Consensus 155 ~~~~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d-~~~~vr~~a~~~l~~l~ 230 (553)
..+.. +.+.+++.+...+.|+++.||..++.+++.++...+++. .+.++|.+...+.+ .++.+|..++++++.++
T Consensus 164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 44432 678899999999999999999999999999998877543 45666766655544 34578899999999999
Q ss_pred ccCCcc--hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCC---------------
Q 008806 231 KLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRD--------------- 291 (553)
Q Consensus 231 ~~~~~~--~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~llp~l~~ll~d--------------- 291 (553)
...+.. .+.+.++|.+.+.++|.++.+|..++.+++.++..++.+. +.+.++|.+.+.+.+
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~ 322 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA 322 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 877652 3456799999999999999999999999999999887664 234577777665531
Q ss_pred ----------------------CcHHHHHHHHHHHHHHHHhhCH--HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhh
Q 008806 292 ----------------------NEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (553)
Q Consensus 292 ----------------------~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~ 347 (553)
..+.+|.+|+.+++.+....+. ..+.+.++|.+...+.|++..||..++.++..+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1246899999999999886553 3456778888888889999999999999998888
Q ss_pred hhhCH---------------------HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh--hHHhhHHHHHHH
Q 008806 348 PLLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVE 404 (553)
Q Consensus 348 ~~~~~---------------------~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~ 404 (553)
...+. ....+.++|.+.+.++|+++.+|.+++..++.++...+.. ...+.++|.+..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~ 482 (1230)
T 1u6g_C 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF 482 (1230)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHH
Confidence 76542 1234567777788899999999999999999998875431 223788999999
Q ss_pred hhcCCCc--HHHHHHHHHHHHHHhhhChhh---hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh-------h--
Q 008806 405 LAEDRHW--RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-------E-- 470 (553)
Q Consensus 405 ~~~d~~~--~vR~~~~~~l~~i~~~~~~~~---~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~-------~-- 470 (553)
.+.|+++ .+|..++..++.+....+++. +.+.++|.++..+.|+...||..++.+++.+++.+|+ .
T Consensus 483 ~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 483 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred HHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 9999876 899999999999988777764 4456789999999999999999999999999999886 1
Q ss_pred HHhhhhhhhhhhhhh--hhcccccchhhhhhhhhHHHHH-------HHhhhhhhhhhhhhhcccchhhhhHHHHHHH
Q 008806 471 WAMQHITPQKSHVLD--CCQWSLMHQKTEYLTSSLMWQK-------CYSLSFPLLTSLWWRKQSVPVWLSSLRIQML 538 (553)
Q Consensus 471 ~~~~~i~p~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~p~~~~~~~~~~~~pv~~~~~~~~~~ 538 (553)
...+.++|.+...+. +.+...+......+ +.+... .++.+.|.+...+..+ .+|..+.|+++.
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~l--g~L~~~~g~~~~~~~~~~l~~L~~~l~~e---~~r~~~~~al~~ 634 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCM--GQIICNLGDNLGSDLPNTLQIFLERLKNE---ITRLTTVKALTL 634 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHH--HHHHHHTGGGCCTHHHHHHHHHHHHTTSS---SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHH--HHHHHHhCchhhhhHHHHHHHHHHHhccc---hhHHHHHHHHHH
Confidence 123678888877773 33322222222222 222211 1234444444444333 267777777765
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.97 E-value=3.4e-28 Score=267.08 Aligned_cols=470 Identities=16% Similarity=0.153 Sum_probs=328.7
Q ss_pred HHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCC--cHHHHHHHHHHhhccccccCC---cchhhcc
Q 008806 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGG---VEHAHVL 87 (553)
Q Consensus 14 ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~--~~~vr~~~~~~l~~l~~~~~~---~~~~~~l 87 (553)
++..|.++++.+ ..++..++.++...++...|++++|.+.+ +.++ ++.+|..+..+++.+++..++ ..+...+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 667777777777 78888888888777665668888888888 6666 788888888888888765432 2344556
Q ss_pred hhHHHhhhccc--hhHHHHHHHHHHHHHHhhcChh----hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH--
Q 008806 88 LPPLETLCTVE--ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-- 159 (553)
Q Consensus 88 ~~~l~~l~~~~--~~~vR~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-- 159 (553)
++.+...+.++ +..+|..+++++..++..++.. .....+++.+.....++++.+|..++.+++.++...++.
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 66666666555 5788888888888887655432 112346777777777878888888888888776554432
Q ss_pred -HHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhC------------------c--hh---hhhhHHHHHHHhhh--
Q 008806 160 -LKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE------------------P--AH---LKTDIMSIFEDLTQ-- 212 (553)
Q Consensus 160 -~~~-~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~------------------~--~~---~~~~l~p~l~~~~~-- 212 (553)
+.. .+++.+.+...|.+..||..+++.+..+++... . .. ..+.++|.+...+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 333 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (876)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence 334 677777777788888888888888877776421 0 00 12456666665553
Q ss_pred -----CCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHH
Q 008806 213 -----DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPA 284 (553)
Q Consensus 213 -----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~llp~ 284 (553)
|++|.+|.+|..++..++..++. ...+.++|.+...+.|.+|.+|.+++.+++.++...+.+. ..+.++|.
T Consensus 334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~ 412 (876)
T 1qgr_A 334 DENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412 (876)
T ss_dssp CSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34678888888888888877663 3456677888888888888888888888888775544211 12457788
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhCH----HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH--------
Q 008806 285 YVRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-------- 352 (553)
Q Consensus 285 l~~ll~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-------- 352 (553)
+...++|+++.||..|+.+++.+++..+. ....+.+++.+...+.|+ ++||..++.++..++..++.
T Consensus 413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~ 491 (876)
T 1qgr_A 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQ 491 (876)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 88888888888888888888888877543 234567777777777774 78888888888888776541
Q ss_pred --------HhHHHhHHHHHHHhhCCC---ChHHHH---------------------------------------------
Q 008806 353 --------DATIEQLLPIFLSLLKDE---FPDVRL--------------------------------------------- 376 (553)
Q Consensus 353 --------~~~~~~l~p~l~~~l~d~---~~~VR~--------------------------------------------- 376 (553)
..+.+.++|.+...+.+. +..+|.
T Consensus 492 ~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 571 (876)
T 1qgr_A 492 EEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQST 571 (876)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCST
T ss_pred ccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 123456677777666543 234444
Q ss_pred -----------HHHHHHHHhhhhhc-hhh--HHhhHHHHHHHhhcCCC--cHHHHHHHHHHHHHHhhhChh--hhHHHHH
Q 008806 377 -----------NIISKLDQVNQVIG-IDL--LSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVG--FFDDKLG 438 (553)
Q Consensus 377 -----------~a~~~l~~~~~~~~-~~~--~~~~ll~~l~~~~~d~~--~~vR~~~~~~l~~i~~~~~~~--~~~~~l~ 438 (553)
.++.+++.++..+| .+. +.+.++|.+...+++.+ +.+|..++.+++.++...|.. .+.+.++
T Consensus 572 ~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 651 (876)
T 1qgr_A 572 SDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFK 651 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44445555555455 221 22557777777777664 689999999999999887764 3557788
Q ss_pred HHHHHHccCC-chHHHHHHHHHHHHHHHHhChhHH--hhhhhhhhhhhhhh
Q 008806 439 ALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEWA--MQHITPQKSHVLDC 486 (553)
Q Consensus 439 ~~l~~~l~D~-~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~p~l~~~l~~ 486 (553)
|.+...+.+. ...||..++.+++.++...|..+. .+.+++.+.+.+.+
T Consensus 652 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 652 PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN 702 (876)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCC
Confidence 9999999887 899999999999999999886543 25777777777764
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.97 E-value=7.9e-27 Score=256.18 Aligned_cols=474 Identities=15% Similarity=0.176 Sum_probs=351.9
Q ss_pred cHHHHHHHhcCc--cHHHHHHHhhhHHHHHHhhChHH---Hhhhhhhhhhh-cCCC--cHHHHHHHHHHhhccccccCCc
Q 008806 10 PIAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV 81 (553)
Q Consensus 10 ~i~~ll~~L~~~--d~~~R~~a~~~l~~i~~~~~~~~---~~~~ll~~l~~-~~d~--~~~vr~~~~~~l~~l~~~~~~~ 81 (553)
-+..++..+.++ ++.+|..+++.+..++...+++. ..+.+++.+.+ +.++ ++++|..+..+++.++..++..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888 89999999999999988776532 34566676666 5555 6899999999999887654431
Q ss_pred ----chhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChh---hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcC
Q 008806 82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (553)
Q Consensus 82 ----~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~ 154 (553)
.....+++.+.....++++.+|..+++++..++...++. .+...+++.+.....+.+..+|..+++.+..++.
T Consensus 209 ~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 111246777777777888899999999999999876542 1222678888888888888899998887766653
Q ss_pred CC--------------------ChH----HHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhhhCchhhhhhH
Q 008806 155 SA--------------------PDI----LKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDI 203 (553)
Q Consensus 155 ~~--------------------~~~----~~~~l~~~l~~ll~-------d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l 203 (553)
.. ... ....+++.+.+.+. |++|.+|++++.+++.++...+ +...+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~ 367 (876)
T 1qgr_A 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHV 367 (876)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHH
T ss_pred HHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-HhhHHHH
Confidence 21 001 23567777777663 4578999999999999999888 4566788
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc---hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC----c
Q 008806 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----P 276 (553)
Q Consensus 204 ~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~----~ 276 (553)
+|.+...++|++|.+|.+++.+++.++...+++ .+...++|.+...++|+++.||..++.+++.++..++.. .
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 888888889999999999999999999877633 344568888889999999999999999999999887642 2
Q ss_pred cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC----------------HHHHHHhHHHHHHHhccCC---cHH---
Q 008806 277 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------------PELAIQHILPCVKELSSDS---SQH--- 334 (553)
Q Consensus 277 ~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~----------------~~~~~~~l~~~l~~l~~d~---~~~--- 334 (553)
..+.+++.+...+.|+ +.||..++.++..++...+ -..+.+.++|.+...+.+. ++.
T Consensus 448 ~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~ 526 (876)
T 1qgr_A 448 YLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526 (876)
T ss_dssp THHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHH
Confidence 3356888888888886 8899999999998887643 0123455666666555432 223
Q ss_pred -----------------------------------------------------HHHHHHHHHHhhhhhhC-HHh--HHHh
Q 008806 335 -----------------------------------------------------VRSALASVIMGMAPLLG-KDA--TIEQ 358 (553)
Q Consensus 335 -----------------------------------------------------vr~~~~~~l~~l~~~~~-~~~--~~~~ 358 (553)
+|..++.+++.++..+| ... ..+.
T Consensus 527 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 606 (876)
T 1qgr_A 527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV 606 (876)
T ss_dssp HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHH
Confidence 34455556666666566 332 2456
Q ss_pred HHHHHHHhhCCCC--hHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCC-CcHHHHHHHHHHHHHHhhhChh--
Q 008806 359 LLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG-- 431 (553)
Q Consensus 359 l~p~l~~~l~d~~--~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~~-- 431 (553)
++|.+...+++.. ..+|..++.+++.++...|... +.+.++|.+...+.+. ++.+|..++.+++.++..+|..
T Consensus 607 l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 686 (876)
T 1qgr_A 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII 686 (876)
T ss_dssp HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7788888887764 4799999999999998877643 2367888888888887 8999999999999999988764
Q ss_pred hhHHHHHHHHHHHccC--CchHHHHHHHHHHHHHHHHhChhHH--hhhhhhhhhhhhh
Q 008806 432 FFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQKSHVLD 485 (553)
Q Consensus 432 ~~~~~l~~~l~~~l~D--~~~~VR~~a~~~l~~l~~~~~~~~~--~~~i~p~l~~~l~ 485 (553)
.+.+.+++.+...+.+ .+..+|..++.+++.++..+|+++. .+.++|.+...++
T Consensus 687 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 687 PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHh
Confidence 3456788888888876 4678999999999999999987753 2456666666554
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.93 E-value=7.1e-24 Score=215.14 Aligned_cols=378 Identities=13% Similarity=0.061 Sum_probs=259.8
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccC----------
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVG---------- 79 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~---------- 79 (553)
.|..++..+.++|+.+|..|...|..+... .....+..|+..+.. .+.++.+|..++..|.++++..-
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~-~~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVE-NLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 477889999999999999999999886432 122334455554443 33478999999999998875321
Q ss_pred ----CcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCC--CcchhhhHhhhhHhhc
Q 008806 80 ----GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE--WFTARVSACGLFHIAY 153 (553)
Q Consensus 80 ----~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~ 153 (553)
++.....+...+...+.++++.+ ..+..+++.++....++..++.++|.+.+.++++ ++.+|..++.+++.+.
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 11122234444444455666677 7888888888877544445677889888888887 8889999999888887
Q ss_pred CCCC----hHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhhCc----hhhhhhHHHHHHHhhhCCChhHHHHHH
Q 008806 154 PSAP----DILKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSVRLLAV 223 (553)
Q Consensus 154 ~~~~----~~~~~~l~~~l~~ll~d~--~~~Vr~~a~~~l~~l~~~~~~----~~~~~~l~p~l~~~~~d~~~~vr~~a~ 223 (553)
.... ..+.+.+++.+.++++|+ ++.||..++++++.++..++. ....+.+++.+.....++++.+|..++
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6542 235677889999988888 789999999999887654432 112344677777777888889999999
Q ss_pred HHHHHhhccCCcc--hhhh-chHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------C-----------C--Ccc---
Q 008806 224 EGCAALGKLLEPQ--DCVA-HILPVIVNFSQDKSWRVRYMVANQLYELCEAV-------G-----------P--EPT--- 277 (553)
Q Consensus 224 ~~l~~l~~~~~~~--~~~~-~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~-------~-----------~--~~~--- 277 (553)
+++..++...+.. .+.. .+++.+...+.|.+..+|..+++.+..++... + . ...
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 9998888765432 3344 67787777778888889988888888887652 0 0 000
Q ss_pred ccchHHHHHHhcCC-------CcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhh
Q 008806 278 RMDLVPAYVRLLRD-------NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (553)
Q Consensus 278 ~~~llp~l~~ll~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~ 350 (553)
...++|.+.+.+.+ .++.+|.+|..+++.++..++ +...+.++|.+...+++++|++|.+++.+++.++...
T Consensus 319 ~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC
Confidence 13456666666532 235677777777777777776 3445667777777777777777777777777777644
Q ss_pred CHH---hHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch
Q 008806 351 GKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (553)
Q Consensus 351 ~~~---~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~ 391 (553)
+.+ ...+.++|.+...++|+++.||..|+.+++.++..++.
T Consensus 398 ~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 398 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 322 12345667777777777777777777777777666554
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.93 E-value=2.5e-23 Score=211.11 Aligned_cols=397 Identities=14% Similarity=0.070 Sum_probs=212.5
Q ss_pred hhhhhhhcCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh---------
Q 008806 49 LIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--------- 119 (553)
Q Consensus 49 ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--------- 119 (553)
|...+..+.+++.++|+.|...|..+... ..+.++..+..++.. .+.+..+|..|...|..+++....
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~-~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVE-NLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 44555556677777888877777764321 012223233333221 123567788777777777643211
Q ss_pred -----hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-HHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHH
Q 008806 120 -----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDD--MPMVRRSAASNLGKFA 191 (553)
Q Consensus 120 -----~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~l~~~l~~ll~d~--~~~Vr~~a~~~l~~l~ 191 (553)
+.....+...+...+.+++..+ ..++.+++.++....++ .+.++++.+.+.+.++ ++.+|..++.+++.++
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 1122233333333444444444 44444444444433222 3444444444444444 4445555555555444
Q ss_pred hhhCch---hhhhhHHHHHHHhhhCC--ChhHHHHHHHHHHHhhccCCcc----hhhhchHHHHHHhcCCCCHHHHHHHH
Q 008806 192 ATVEPA---HLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVA 262 (553)
Q Consensus 192 ~~~~~~---~~~~~l~p~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~~~vR~~~~ 262 (553)
+...++ ...+.+++.+...++|+ +..||..|++++..+...+... ...+.+++.+.....+.++.+|..++
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 443221 12233444444444444 3444555554444443322211 01122344444444444444444444
Q ss_pred HHHHHHHHHhCCCc--ccc-chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccC----CcHHH
Q 008806 263 NQLYELCEAVGPEP--TRM-DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD----SSQHV 335 (553)
Q Consensus 263 ~~l~~l~~~~~~~~--~~~-~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d----~~~~v 335 (553)
++|..++...+... ... .+++.+...++|.++++|..+++.+..+++... . ......+ ..+..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~-----~-----~~~~~~~~~~~~~~~~ 308 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM-----D-----LAIEASEAAEQGRPPE 308 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH-----H-----HHHHHCCTTCSSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-----H-----HHHhcccccccCCCcc
Confidence 44444444433321 112 344444444444444444444444444333210 0 0000000 00000
Q ss_pred HHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC-------CCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcC
Q 008806 336 RSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (553)
Q Consensus 336 r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-------d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d 408 (553)
+ .....+ ......++|.+.+.+. |+++.+|.+++.+++.++..+|. ...+.++|.+...+.+
T Consensus 309 ~--------~~~~~~--~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~ 377 (462)
T 1ibr_B 309 H--------TSKFYA--KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKN 377 (462)
T ss_dssp C--------CCCCHH--HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTC
T ss_pred c--------hhHHHH--HHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcC
Confidence 0 000000 0123567787777774 23568999999999999999984 4447899999999999
Q ss_pred CCcHHHHHHHHHHHHHHhhhChh---hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh
Q 008806 409 RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 409 ~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
++|++|.+++.+++.++...+.+ ...+.++|.+...++|+++.||..|+.+++++++.+++.
T Consensus 378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999876533 234678999999999999999999999999999998763
No 13
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.91 E-value=1.2e-21 Score=203.45 Aligned_cols=437 Identities=12% Similarity=0.113 Sum_probs=274.6
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcc
Q 008806 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (553)
Q Consensus 9 ~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 87 (553)
.-+..++..+.+++..+|..+.-.+..+++. .++. ...+++.+.+ +.|+++.+|..+..+++.+. .+.....+
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~-~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l 122 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDM-AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYL 122 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHH-HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-CchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHH
Confidence 3344455555555555555554444444321 1111 1223333333 55666666666666665543 23344445
Q ss_pred hhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhh-hhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH----HHH
Q 008806 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKT 162 (553)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~ 162 (553)
.+.+..++.|+++.||+.|+.++..+....++ ... ..++|.+.++++|+++.+|..|+.+++.+...-+.. ...
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~ 201 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNP 201 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccH
Confidence 55555555566666666666666666653322 221 235566666666666666666666666655432211 122
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccC--Ccchh--
Q 008806 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL--EPQDC-- 238 (553)
Q Consensus 163 ~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~~~~-- 238 (553)
..+..+.+.+.+.+++.+...++.++.++.. ++.....+++.+...+++.++.|+..|+.++..+.... +++..
T Consensus 202 ~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~ 279 (591)
T 2vgl_B 202 QNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM 279 (591)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 2333333434455566555555544433311 11223456777777788899999999999999988654 22221
Q ss_pred -hhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 008806 239 -VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI 317 (553)
Q Consensus 239 -~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 317 (553)
...+.+.+..+. +.++.+|..++.+++.++...+... ...+- .+....+|+ ..||..++..+..++.. +. .
T Consensus 280 ~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~-~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~---~n-v 351 (591)
T 2vgl_B 280 LLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEIL-KQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQ---AN-I 351 (591)
T ss_dssp HHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTT-TTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCS---ST-H
T ss_pred HHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHH-HHHHH-hheeccCCh-HHHHHHHHHHHHHHCCh---hh-H
Confidence 234555555555 4788999999999999988744322 22221 222223444 89999998877765432 22 3
Q ss_pred HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhh
Q 008806 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (553)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ 397 (553)
+.+++.+..++.+.++.+|..++.+++.++..+++. .+.+++.+..++.+....|+..++.++..++...... ...
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~ 427 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YES 427 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHH
Confidence 567788888889999999999999999999877543 4678899999999999999999999999887754322 255
Q ss_pred HHHHHHHhhcC-CCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh
Q 008806 398 LLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 398 ll~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
+++.|.+.+.+ .+..+|.+++.++|..+..... ...++..+...+.+....||..++.++.++....+.
T Consensus 428 ~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 428 IIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS 497 (591)
T ss_dssp THHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch
Confidence 67777777764 5678999999999988766543 235566666666788899999999999999987653
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=2e-21 Score=196.31 Aligned_cols=377 Identities=11% Similarity=0.023 Sum_probs=286.0
Q ss_pred hhHHHhhhccchhHHHHHHHHHHHHHHhh-cCh---hhhhh-hHHHHHHHHhcCC-CcchhhhHhhhhHhhcCCCChH--
Q 008806 88 LPPLETLCTVEETCVRDKAVESLCRIGSQ-MRE---SDLVD-WYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-- 159 (553)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~-~~~---~~~~~-~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~-- 159 (553)
++.+...++++++.+|..|+..+..++.. ..+ ..+.. .++|.+.++++++ ++.+|..++.+++.++..-.+.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 55555555677888999999999887652 121 12233 5788888888877 7899999999999988754332
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhC-CChhHHHHHHHHHHHhhccC
Q 008806 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLL 233 (553)
Q Consensus 160 --~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d-~~~~vr~~a~~~l~~l~~~~ 233 (553)
....+++.+.++++++++.||..++.+|+.++...+. ......++|.+..++.+ .++.+|..++.+++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 2246899999999999999999999999999874321 11224578888888885 78999999999999999654
Q ss_pred Cc---chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 008806 234 EP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307 (553)
Q Consensus 234 ~~---~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~ 307 (553)
++ ......++|.+.+++.+.++.+|..++.+|+.++..... ......++|.+++++.++++.+|..|+.+|+.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11 233467899999999999999999999999998742110 011235899999999999999999999999998
Q ss_pred HHhhCHH--H-HHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH---HhHHHhHHHHHHHhhCCCChHHHHHHHHH
Q 008806 308 CRILNPE--L-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (553)
Q Consensus 308 ~~~~~~~--~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~ 381 (553)
+...+.. . ....++|.+..++.++++.+|..++.+++.++..... ......++|.+..+++++++.||..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7643211 1 1235788999999999999999999999999863221 11234788999999999999999999999
Q ss_pred HHHhhhhhchhh----HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh---------hhHHHH-----HHHHHH
Q 008806 382 LDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---------FFDDKL-----GALCMQ 443 (553)
Q Consensus 382 l~~~~~~~~~~~----~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~---------~~~~~l-----~~~l~~ 443 (553)
++.++....++. ....++|.|..++.++++.+|..++.++..+....+.. .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999987533332 23568899999999999999999999999998754321 222333 566777
Q ss_pred HccCCchHHHHHHHHHHHHHH
Q 008806 444 WLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 444 ~l~D~~~~VR~~a~~~l~~l~ 464 (553)
+..+++..||..|..++..+.
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 888889999999999888766
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.89 E-value=1e-20 Score=196.62 Aligned_cols=432 Identities=15% Similarity=0.101 Sum_probs=308.0
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchh-hcc
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA-HVL 87 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-~~l 87 (553)
.++.+...|+++++.+|..|+++++.+. ..+..+.+.|.+.. +.|.++.||+.|+.++.++.+..++ ... ..+
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~-~~~~~~~ 161 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ-MVEDQGF 161 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC-CHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh-hcccccH
Confidence 3567777899999999999998888763 44456777887777 7899999999999999999874332 221 246
Q ss_pred hhHHHhhhccchhHHHHHHHHHHHHHHhhcChh---hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHH
Q 008806 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164 (553)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l 164 (553)
.+.+..++.|+++.|+..|+.++..++..-++. ......++.+.+...+.++-.+...+++++.+.+. ++.....+
T Consensus 162 ~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~~~~ 240 (591)
T 2vgl_B 162 LDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREAQSI 240 (591)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHHHHH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 788888889999999999999999998765422 11112233333333444444566666666665533 33356788
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhh--Cchh---hhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhh
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATV--EPAH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 239 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~--~~~~---~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 239 (553)
++.+..++++.++.|+..+++++..+.... .++. ....+.+.+..+. +.+.++|..++.++..++...+. ...
T Consensus 241 l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~ 318 (591)
T 2vgl_B 241 CERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILK 318 (591)
T ss_dssp HHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHH
Confidence 999999999999999999999999887644 1121 1234555555554 47899999999999999875432 222
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 319 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (553)
.++..+ ....+|+ +.+|..+++.+..++ .+...+.+++.+...+++.+.++|..++.+++.++..+++. ...
T Consensus 319 ~~~~~~-~~~~~d~-~~Ir~~al~~L~~l~----~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~ 390 (591)
T 2vgl_B 319 QEIKVF-FVKYNDP-IYVKLEKLDIMIRLA----SQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AER 390 (591)
T ss_dssp TCTTTT-SCCTTSC-HHHHHHHHHHHHHTC----CSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHH
T ss_pred HHHHhh-eeccCCh-HHHHHHHHHHHHHHC----ChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHH
Confidence 222222 1222444 999999988877754 22223568888899999999999999999999999876432 356
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC-CCChHHHHHHHHHHHHhhhhhchhhHHhhH
Q 008806 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (553)
Q Consensus 320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~~~~~~~l 398 (553)
+++.+..++.+....++..++..+..+....+.. .+.+++.+.+.+. +.++.+|..++..+|+++..... ...+
T Consensus 391 ~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~ 465 (591)
T 2vgl_B 391 CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADEL 465 (591)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHH
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHH
Confidence 7788888889999999998888888887654432 2345667777775 46789999999999999876543 1345
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHH-ccC-CchHHHHHHHHHHHHHH
Q 008806 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQD-KVYSIRDAAANNLKRLA 464 (553)
Q Consensus 399 l~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~-l~D-~~~~VR~~a~~~l~~l~ 464 (553)
+..+.+...+.+..+|..++.++..+....+... ...+..++.. ..| .+.+||..|...++-+.
T Consensus 466 l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~--~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 466 LESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET--QELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp HHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT--HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTT
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH--HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHC
Confidence 5555555567788999999999999887654432 2344444444 456 68899999998776653
No 16
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=4.8e-20 Score=194.17 Aligned_cols=461 Identities=12% Similarity=0.061 Sum_probs=328.5
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHH---hhhhhhhhhh-cCC-CcHHHHHHHHHHhhccccccCCc--c
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGV--E 82 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~---~~~ll~~l~~-~~d-~~~~vr~~~~~~l~~l~~~~~~~--~ 82 (553)
.+..|+..|+++|+.+|..|+..|..++........ ....++.+.. +.+ +++++|..++.+|..++...... .
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 488899999999999999999999999864432211 1234555555 443 58899999999999876532110 1
Q ss_pred hhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhh---hhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH
Q 008806 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD---LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (553)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~---~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 159 (553)
.....++.+..++.++++.+|..|+.+|..++...+... .....+|.+.+++.++++.++..++.++..++......
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 112356677777888889999999999999987643321 23458899999999888888888888888887532221
Q ss_pred ----HHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhhhCc--hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhcc
Q 008806 160 ----LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (553)
Q Consensus 160 ----~~~~l~~~l~~ll~d~~-~~Vr~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~ 232 (553)
.....++.+.+++++.+ ..++..++.+|..++..-.. .......+|.+..++.+.+..++..++.++..++..
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 12345778888887665 56778888888888753221 112234678888889999999999999999999876
Q ss_pred CCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCC--cHHHHHHHHHHHHHH
Q 008806 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKF 307 (553)
Q Consensus 233 ~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~llp~l~~ll~d~--~~~vr~~a~~~l~~~ 307 (553)
.+.......++|.+.+++.+.++.+|..++.+|..++..-. ........++.+++++.+. .+.++..|+.+|+.+
T Consensus 255 ~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 255 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp CTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 54444445689999999999999999999999999875310 0011234788888888753 279999999999998
Q ss_pred HHhhCHH------HHHHhHHHHHHHhccCCc-HHHHHHHHHHHHhhhhhhCH--HhHHHhHHHHHHHhhCCCC-------
Q 008806 308 CRILNPE------LAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEF------- 371 (553)
Q Consensus 308 ~~~~~~~------~~~~~l~~~l~~l~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~------- 371 (553)
+...+.. ......+|.+.+++.+++ +.+|..++.+++.++..-.. ......++|.+.+++.+.+
T Consensus 335 ~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a 414 (644)
T 2z6h_A 335 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414 (644)
T ss_dssp TSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-
T ss_pred hcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHh
Confidence 7532221 122357888889888765 89999999999999853221 1223456777777776533
Q ss_pred ---------------hHHHHHHHHHHHHhhhhhchh--hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh-hh
Q 008806 372 ---------------PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FF 433 (553)
Q Consensus 372 ---------------~~VR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~~ 433 (553)
.+++..++.+|..++..-... ......+|.|..++.+.+..+|..++.++..++..-... .+
T Consensus 415 ~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i 494 (644)
T 2z6h_A 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 494 (644)
T ss_dssp ---------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred hhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 456667777777666432211 113457889999999999999999999999887431111 11
Q ss_pred -HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh
Q 008806 434 -DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 434 -~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
....++.+..++.+++..||..|+.+|+.+...-+..
T Consensus 495 ~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~ 532 (644)
T 2z6h_A 495 EAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532 (644)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHh
Confidence 1124678889999999999999999999998765543
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.88 E-value=1.1e-20 Score=190.92 Aligned_cols=376 Identities=10% Similarity=0.029 Sum_probs=266.6
Q ss_pred hhhhhh-cCCCcHHHHHHHHHHhhccccccCCcc---h-hh-cchhHHHhhhccc-hhHHHHHHHHHHHHHHhhcCh---
Q 008806 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE---H-AH-VLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMRE--- 119 (553)
Q Consensus 50 l~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~---~-~~-~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~~~--- 119 (553)
++.+.+ +.++++++|..++..|.++......+. . .. .+++.+..++.++ ++.+|..++.++..++..-+.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 343333 455566666666666665533111111 1 11 3556555555555 678888888888887753221
Q ss_pred hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH----HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhh
Q 008806 120 SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATV 194 (553)
Q Consensus 120 ~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~ll~d-~~~~Vr~~a~~~l~~l~~~~ 194 (553)
.......+|.+.++++++++.+|..++..++.++...... ....+++.+.+++++ +++.+|..++.+|+.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 1123457888888888888888888888888887654221 123467888888885 78999999999999999654
Q ss_pred Cc---hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc---hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 008806 195 EP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (553)
Q Consensus 195 ~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l 268 (553)
++ ......++|.+..++.++++.+|..++.++..++...+.. .....++|.+.+++.+.++.+|..++.+|+.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11 2334678899999999999999999999999998653221 12235788899999999999999999999998
Q ss_pred HHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HH-HHHhHHHHHHHhccCCcHHHHHHHHHH
Q 008806 269 CEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--EL-AIQHILPCVKELSSDSSQHVRSALASV 342 (553)
Q Consensus 269 ~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~-~~~~l~~~l~~l~~d~~~~vr~~~~~~ 342 (553)
+...+. ......++|.+.+++.++++.+|..|+.+|+.++..... +. +...++|.+..++.++++.+|..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 753211 011235899999999999999999999999998753211 11 124678889899999999999999999
Q ss_pred HHhhhhhhCHHh----HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh---------hHHhhH-----HHHHHH
Q 008806 343 IMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---------LLSQSL-----LPAIVE 404 (553)
Q Consensus 343 l~~l~~~~~~~~----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---------~~~~~l-----l~~l~~ 404 (553)
++.++....++. ....++|.+..+++++++.||..++.++..++...+.. .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999986533332 23468899999999999999999999999998743321 111222 466777
Q ss_pred hhcCCCcHHHHHHHHHHHHHH
Q 008806 405 LAEDRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 405 ~~~d~~~~vR~~~~~~l~~i~ 425 (553)
+..+++..+|..+..++..+.
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 777788888888887776654
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.88 E-value=3.1e-20 Score=191.29 Aligned_cols=380 Identities=13% Similarity=0.076 Sum_probs=289.2
Q ss_pred chhHHHhhhccchhHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhcCC-CcchhhhHhhhhHhhcCCCChH--
Q 008806 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-- 159 (553)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~-- 159 (553)
.++.+...+.++++.+|..|+..+..++..... ..+...++|.+.+++.++ ++.+|..++..++.++......
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 455555555667788999999999888764321 123345788888888886 7899999999999988754322
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC
Q 008806 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234 (553)
Q Consensus 160 --~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 234 (553)
.....++.+.+++.++++.||..++.+|+.++...+. ......++|.+..++.+.+..+|..++.++..++..-+
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence 1234688999999999999999999999999864211 12234578889999999999999999999999996542
Q ss_pred c---chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 008806 235 P---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308 (553)
Q Consensus 235 ~---~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~ 308 (553)
+ ......++|.+..++.+.++.+|..++.+|+.++...+. ......++|.+++++.+.++.+|..|+.+|+.++
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 2 233456899999999999999999999999999843110 1112368899999999999999999999999887
Q ss_pred HhhCHH---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH---hHHHhHHHHHHHhhCCCChHHHHHHHHHH
Q 008806 309 RILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (553)
Q Consensus 309 ~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~VR~~a~~~l 382 (553)
...+.. .+...++|.+..++.++++.+|..++.+++.++...... .....++|.+..+++++++.+|..++.+|
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 407 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 532111 122468889999999999999999999999998632211 12346789999999999999999999999
Q ss_pred HHhhhhhch--hh----HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh---------hhhHHH-----HHHHHH
Q 008806 383 DQVNQVIGI--DL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFDDK-----LGALCM 442 (553)
Q Consensus 383 ~~~~~~~~~--~~----~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---------~~~~~~-----l~~~l~ 442 (553)
+.++...+. +. ....++|.|..++.++++.+|..++.++..+...... ..+... .++.+.
T Consensus 408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~ 487 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF 487 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHH
Confidence 999876433 22 2345789999999999999999999999999875432 112222 466777
Q ss_pred HHccCCchHHHHHHHHHHHHHHHH
Q 008806 443 QWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 443 ~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
.+..+++..|+..|..++..+...
T Consensus 488 ~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 488 NCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCc
Confidence 888999999999999988877654
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=3.9e-20 Score=197.83 Aligned_cols=458 Identities=12% Similarity=0.056 Sum_probs=312.7
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHH---hhhhhhhhhh-cC-CCcHHHHHHHHHHhhccccccCC--cch
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGG--VEH 83 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~---~~~ll~~l~~-~~-d~~~~vr~~~~~~l~~l~~~~~~--~~~ 83 (553)
+..|+..|.++|+.+|..|+..|..++........ .+..++.+.. +. +.++++|+.++.+|..++..... ...
T Consensus 152 ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~ 231 (780)
T 2z6g_A 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231 (780)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 66777778888889999999988888753321111 1234555444 33 34788999999888887653111 011
Q ss_pred hhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChh--hh-hhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHH
Q 008806 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DL-VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL 160 (553)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~-~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 160 (553)
....++.+..++.++++.+|..|+.+|..++...+.. .+ ....+|.+.+++.++++.++..++.++..++... ++.
T Consensus 232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~-~e~ 310 (780)
T 2z6g_A 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN-QES 310 (780)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHH
Confidence 1235666777777778889999999999988764331 11 2457788888888888888888888777665421 221
Q ss_pred -----HHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhhhCc--hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhcc
Q 008806 161 -----KTELRSIYTQLCQDDMPM-VRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 232 (553)
Q Consensus 161 -----~~~l~~~l~~ll~d~~~~-Vr~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~ 232 (553)
....++.+.+++++.++. ++..++.++..++..-.. ......++|.+..++.+.+..++..++.++..++..
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~ 390 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 390 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhcc
Confidence 123466777777776654 445667777777753211 112334678888889999999999999999999876
Q ss_pred CCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCC-Cc-HHHHHHHHHHHHHH
Q 008806 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRD-NE-AEVRIAAAGKVTKF 307 (553)
Q Consensus 233 ~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d-~~-~~vr~~a~~~l~~~ 307 (553)
.........++|.+.+++.+.++.+|..++.+|+.++..-.. .......++.+++++.+ .+ ..+|..|+.+|+.+
T Consensus 391 ~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL 470 (780)
T 2z6g_A 391 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 470 (780)
T ss_dssp CTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 544333456899999999999999999999999998642100 01123478888888865 23 48999999999988
Q ss_pred HHhhCHH------HHHHhHHHHHHHhccCCc-HHHHHHHHHHHHhhhhhhCHH--hHHHhHHHHHHHhhCCCC-------
Q 008806 308 CRILNPE------LAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEF------- 371 (553)
Q Consensus 308 ~~~~~~~------~~~~~l~~~l~~l~~d~~-~~vr~~~~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~------- 371 (553)
+...+.. ......+|.+..++.+++ +.+|..++.+++.++..-... .....++|.+.+++.+.+
T Consensus 471 ~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 550 (780)
T 2z6g_A 471 TSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550 (780)
T ss_dssp TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHH
Confidence 6532221 112346788888887765 699999999999998532111 112356777777775533
Q ss_pred ---------------hHHHHHHHHHHHHhhhhhchh--hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh-hh
Q 008806 372 ---------------PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FF 433 (553)
Q Consensus 372 ---------------~~VR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~~ 433 (553)
.+++..++.+|+.++..-... ......+|.|..++.+++..+|..++.++..++..-... .+
T Consensus 551 a~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i 630 (780)
T 2z6g_A 551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 630 (780)
T ss_dssp C------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred hhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 346677777777775421111 123557889999999999999999999999887321111 11
Q ss_pred -HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh
Q 008806 434 -DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 434 -~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
....++.+..++.+++..||..|+.+|..+...-+.
T Consensus 631 ~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 631 EAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH
Confidence 112577888999999999999999999999976553
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.87 E-value=5.9e-20 Score=189.24 Aligned_cols=378 Identities=12% Similarity=0.058 Sum_probs=284.1
Q ss_pred hhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcc----hhhcchhHHHhhhccc-hhHHHHHHHHHHHHHHhhcCh--
Q 008806 48 ELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE----HAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMRE-- 119 (553)
Q Consensus 48 ~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~~~-- 119 (553)
..++.+.. +.++++++|..++..|..++.....+. ....++|.+..++.++ ++.+|..|+.+|..++...+.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 33444444 677788999999999988865432221 1234677777777776 789999999999998874322
Q ss_pred -hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh
Q 008806 120 -SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194 (553)
Q Consensus 120 -~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~ 194 (553)
.......+|.+.++++++++.+|..++..++.++...... ....+++.+.+++.+.++.+|..++.+|+.++...
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 1122346788888888888999999999999988653222 22356889999999999999999999999999654
Q ss_pred C---chhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc--c-hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 008806 195 E---PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--Q-DCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (553)
Q Consensus 195 ~---~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l 268 (553)
+ .......++|.+..++.++++.+|..++.++..++...+. . .....++|.+..++.+.++.+|..++.+|+.+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 2 1234467889999999999999999999999999865322 1 12235788999999999999999999999998
Q ss_pred HHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH----HHHhHHHHHHHhccCCcHHHHHHHHH
Q 008806 269 CEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPCVKELSSDSSQHVRSALAS 341 (553)
Q Consensus 269 ~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~~~~ 341 (553)
+...+. ......++|.+..++.++++.+|..|+.+|+.++.. +++. +...++|.+..++.++++.+|..++.
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 742111 111246899999999999999999999999998763 2222 22457888888898999999999999
Q ss_pred HHHhhhhhhCH--Hh----HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh---------hH-----HhhHHHH
Q 008806 342 VIMGMAPLLGK--DA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---------LL-----SQSLLPA 401 (553)
Q Consensus 342 ~l~~l~~~~~~--~~----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---------~~-----~~~ll~~ 401 (553)
+++.++...++ +. ....++|.+..++.+.++.||..++.+|..++...... .+ ....++.
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 485 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHH
Confidence 99999876443 22 23457899999999999999999999999998754321 11 1235777
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHh
Q 008806 402 IVELAEDRHWRVRLAIIEYIPLLAS 426 (553)
Q Consensus 402 l~~~~~d~~~~vR~~~~~~l~~i~~ 426 (553)
|..+..+++..++..+..++..+..
T Consensus 486 L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 486 IFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 8888889999999988888876553
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=1.6e-19 Score=193.20 Aligned_cols=478 Identities=13% Similarity=0.055 Sum_probs=318.0
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcc-h--hhc
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE-H--AHV 86 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~-~--~~~ 86 (553)
+..++..|.+++...|..+++.+...... ......+|.+.. +.+.++.+|..++.+|+.++....... . ...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~----~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA----ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH----HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 57889999999999998888877754321 122344455444 457789999999999999876422111 1 112
Q ss_pred chhHHHhhh-ccchhHHHHHHHHHHHHHHhhcCh--hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH---H
Q 008806 87 LLPPLETLC-TVEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---L 160 (553)
Q Consensus 87 l~~~l~~l~-~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~ 160 (553)
.++.+..++ .+++..+|..|+.+|..++..-.. .......+|.+.+++++++..+|..++.++..++..-... .
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 344444433 455889999999999997754211 1123357889999999999999999999999987653322 2
Q ss_pred -HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChh-HHHHHHHHHHHhhccCCc
Q 008806 161 -KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDS-VRLLAVEGCAALGKLLEP 235 (553)
Q Consensus 161 -~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~-vr~~a~~~l~~l~~~~~~ 235 (553)
....++.+.+++.++++.++..++.++..++..... .......++.+..++.+.+.+ ++..++.++..++..-..
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 352 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence 246789999999999999999999999987742110 112234567777777776554 455677788877753211
Q ss_pred --chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 008806 236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (553)
Q Consensus 236 --~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (553)
.......+|.+..++.+.+..++..++.+|..++...........++|.+++++.+.++.+|..|+.+|..++..-..
T Consensus 353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~ 432 (780)
T 2z6g_A 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432 (780)
T ss_dssp HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 112234678899999999999999999999999876544333456899999999999999999999999988653211
Q ss_pred H--H-HHHhHHHHHHHhccC-Cc-HHHHHHHHHHHHhhhhhhCH------HhHHHhHHHHHHHhhCCCCh-HHHHHHHHH
Q 008806 314 E--L-AIQHILPCVKELSSD-SS-QHVRSALASVIMGMAPLLGK------DATIEQLLPIFLSLLKDEFP-DVRLNIISK 381 (553)
Q Consensus 314 ~--~-~~~~l~~~l~~l~~d-~~-~~vr~~~~~~l~~l~~~~~~------~~~~~~l~p~l~~~l~d~~~-~VR~~a~~~ 381 (553)
. . .....++.+..++.+ .+ ..+|..++.+++.++...+. .......+|.+..++.+++. .+|..++.+
T Consensus 433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 1 1 112356777777765 33 48999999999999754332 11234568899999987764 999999999
Q ss_pred HHHhhhhhchh--hHHhhHHHHHHHhhcCCCc----------------------HHHHHHHHHHHHHHhhhChh--hhHH
Q 008806 382 LDQVNQVIGID--LLSQSLLPAIVELAEDRHW----------------------RVRLAIIEYIPLLASQLGVG--FFDD 435 (553)
Q Consensus 382 l~~~~~~~~~~--~~~~~ll~~l~~~~~d~~~----------------------~vR~~~~~~l~~i~~~~~~~--~~~~ 435 (553)
|+.+...-... .....++|.|.+++.+.++ .++..++.+++.++...... ....
T Consensus 513 L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~ 592 (780)
T 2z6g_A 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL 592 (780)
T ss_dssp HHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHC
Confidence 99997522111 1234577777777765433 35566777777765321111 1123
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHHh--ChhHHhhhhhhhhhhhhhhhccccc
Q 008806 436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQKSHVLDCCQWSLM 492 (553)
Q Consensus 436 ~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~--~~~~~~~~i~p~l~~~l~~~~~~~~ 492 (553)
..+|.+..++.+++.+||..++.+++.+...- .........++.|.+++.+.+..++
T Consensus 593 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr 651 (780)
T 2z6g_A 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVA 651 (780)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 35789999999999999999999999987321 0111123467777777776554443
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.87 E-value=1.3e-19 Score=187.02 Aligned_cols=453 Identities=12% Similarity=0.038 Sum_probs=312.1
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHH-H--hhhhhhhhhh-cC-CCcHHHHHHHHHHhhccccccCCc--c
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEER-T--RKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGV--E 82 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~-~--~~~ll~~l~~-~~-d~~~~vr~~~~~~l~~l~~~~~~~--~ 82 (553)
.+..++..|+++|+.+|..|+..|..++..-.... . ....++.+.. +. ++++++|..++.+|..++...... -
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 48888999999999999999999999874322111 1 1234555544 43 458899999999999886531110 1
Q ss_pred hhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChh--h-hhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH
Q 008806 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--D-LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (553)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 159 (553)
.....+|.+..++.++++.++..++.+|..++...+.. . .....+|.+.+++.++++.+|..++..+..++.. .++
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~-~~~ 176 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQE 176 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-CHH
Confidence 11235667777788888999999999999998764331 1 2345789999999999999999998888877653 222
Q ss_pred H-----HHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhhCc--hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhc
Q 008806 160 L-----KTELRSIYTQLCQDDMP-MVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 231 (553)
Q Consensus 160 ~-----~~~l~~~l~~ll~d~~~-~Vr~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~ 231 (553)
. ....++.+.+++++.++ .++..++..+..++..-.. .......+|.+..++.+++..++..++.++..++.
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 1 12356677777766554 4556667777777642211 11224578888888999999999999999999987
Q ss_pred cCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC--CcHHHHHHHHHHHHH
Q 008806 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVTK 306 (553)
Q Consensus 232 ~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~llp~l~~ll~d--~~~~vr~~a~~~l~~ 306 (553)
..+.......++|.+.+++.+.++.+|..++.+|+.++..-. ........+|.+++++.+ +++.++..|+.+|+.
T Consensus 257 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 257 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 655444445689999999999999999999999999865210 001123468888888864 347999999999998
Q ss_pred HHHhhCHH------HHHHhHHHHHHHhccCCc-HHHHHHHHHHHHhhhhhhCH--HhHHHhHHHHHHHhhCCCChHHHHH
Q 008806 307 FCRILNPE------LAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLN 377 (553)
Q Consensus 307 ~~~~~~~~------~~~~~l~~~l~~l~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~VR~~ 377 (553)
++...+.. ......+|.+..++.+++ +.+|..++.+++.++..-.. ......++|.+..+++++++.+|..
T Consensus 337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 416 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416 (529)
T ss_dssp HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 86542221 112346788888888876 79999999999999853221 1123467888999988877777775
Q ss_pred HHHHHH----------------------Hhhhhhch--hhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhC-hh-
Q 008806 378 IISKLD----------------------QVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG- 431 (553)
Q Consensus 378 a~~~l~----------------------~~~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~-~~- 431 (553)
++.++. .++..... .......+|.|..++.+++..+|..++.+++.++..-. ..
T Consensus 417 a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 496 (529)
T 1jdh_A 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA 496 (529)
T ss_dssp ---------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 554443 33321110 01224567888999999999999999999988763210 01
Q ss_pred hhHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 008806 432 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (553)
Q Consensus 432 ~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l 463 (553)
......++.+..++.+++.+||..|..++.++
T Consensus 497 i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 497 IEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 11123567888899999999999999998876
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.86 E-value=3.4e-19 Score=183.60 Aligned_cols=380 Identities=13% Similarity=0.079 Sum_probs=286.4
Q ss_pred chhHHHhhhccchhHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhcCCC-cchhhhHhhhhHhhcCCCChH--
Q 008806 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEW-FTARVSACGLFHIAYPSAPDI-- 159 (553)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~-- 159 (553)
-+|.+...+.++++.+|..|+..+..++..-.. ..+...++|.+.+++.+++ +.+|..++.+++.++..-...
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 355555556677889999999999998765431 2233457888888888776 899999999999998753322
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhh-hCCChhHHHHHHHHHHHhhccC
Q 008806 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLL 233 (553)
Q Consensus 160 --~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~-~d~~~~vr~~a~~~l~~l~~~~ 233 (553)
.....++.+.+++.++++.||..++.+|+.++...+. .......+|.+..++ .+.++.++..++.++..++...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 2235789999999999999999999999999864221 112234677788888 6788999999999999998764
Q ss_pred Cc--chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 008806 234 EP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308 (553)
Q Consensus 234 ~~--~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~ 308 (553)
+. ......++|.+..++.+.++.++..++.+|+.++..... ......++|.+++++.++++.++..|+.+|+.++
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 22 233456899999999999999999999999998743111 0112357899999999999999999999999987
Q ss_pred HhhCHH---HHHHhHHHHHHHhccCC-cHHHHHHHHHHHHhhhhhhCH---HhHHHhHHHHHHHhhCCCChHHHHHHHHH
Q 008806 309 RILNPE---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (553)
Q Consensus 309 ~~~~~~---~~~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~ 381 (553)
...+.. .+...++|.+..++.++ ++.+|..++.+++.++..... ......++|.+..++.+.++.+|..|+.+
T Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 632111 11234688888999888 999999999999999863221 11234678999999998899999999999
Q ss_pred HHHhhhhhchhh----HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh---------hhhHH-----HHHHHHHH
Q 008806 382 LDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFDD-----KLGALCMQ 443 (553)
Q Consensus 382 l~~~~~~~~~~~----~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---------~~~~~-----~l~~~l~~ 443 (553)
|+.++..-+++. ....+++.|..++.++++.++..++.++..+...... ..+.. ..++.+..
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 474 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 474 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence 999987633332 1246788899999999999999999999999865432 11222 23566777
Q ss_pred HccCCchHHHHHHHHHHHHHHHH
Q 008806 444 WLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 444 ~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
+..+++..|+..|...+..+...
T Consensus 475 L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 475 LQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp GGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHcCCCHHHHHHHHHHHHHHCCC
Confidence 88889999999999988876643
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.85 E-value=3.6e-18 Score=178.07 Aligned_cols=464 Identities=13% Similarity=0.071 Sum_probs=334.1
Q ss_pred HHHHHHHhhhHHHHHHhhChHH----Hhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCc---ch-hhcchhHHHh
Q 008806 23 IQLRLNSIRRLSTIARALGEER----TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV---EH-AHVLLPPLET 93 (553)
Q Consensus 23 ~~~R~~a~~~l~~i~~~~~~~~----~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~---~~-~~~l~~~l~~ 93 (553)
...|..|.-.++.+...+..+. ..+.+-.++.. ....+.+-.-.++.++..+.....+. -+ ..-.++.+..
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~ 297 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILA 297 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHH
Confidence 4679999999999988887433 33344444444 44555555566677777776533221 11 2345677777
Q ss_pred hhccchhHHHHHHHHHHHHHHhhcCh-hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCC---------ChHHHHH
Q 008806 94 LCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA---------PDILKTE 163 (553)
Q Consensus 94 l~~~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---------~~~~~~~ 163 (553)
++.++++.++..|.++++..+..-.. +.+...-.|.+..+.++++..+|..++..+..+.... .......
T Consensus 298 Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~ 377 (810)
T 3now_A 298 MATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377 (810)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence 88888999999999999998765221 1122223488888888888888998888888876322 1124678
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHHHHhhhCc-hhhh--hhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc--
Q 008806 164 LRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP-AHLK--TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-- 236 (553)
Q Consensus 164 l~~~l~~ll~d~--~~~Vr~~a~~~l~~l~~~~~~-~~~~--~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 236 (553)
+++.+.+++.++ ++.+|+.++++|..++..-.. +.+. ...+|.+.+++++++..+...+..+++.++.....+
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~ 457 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence 899999998887 899999999999998754321 1111 357888999999999999999999999999754210
Q ss_pred ---------------------------------hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccccch
Q 008806 237 ---------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDL 281 (553)
Q Consensus 237 ---------------------------------~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l 281 (553)
......+|.+..++...++.+|..++++|++++..-. ........
T Consensus 458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Ga 537 (810)
T 3now_A 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGG 537 (810)
T ss_dssp CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 0112378999999999999999999999999984210 01122357
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH-----HHhHHHHHHHhccCC-cHHHHHHHHHHHHhhhhhhCH---
Q 008806 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-----IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK--- 352 (553)
Q Consensus 282 lp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~--- 352 (553)
+|.++.++.+..+.+|..|+++|..++...+++.. ....+|.+..++... +...+..++.++..++..-+.
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999998899999999999998876544421 124678888888754 445567889999999864211
Q ss_pred HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch-hhHH--hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhC
Q 008806 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (553)
Q Consensus 353 ~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~-~~~~--~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~ 429 (553)
.......+|.+..++.++++.||..|+.+++.++..-.. ..+. ...++.|..++.+++..+|..++.+++.++....
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~ 697 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV 697 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH
Confidence 122345688999999999999999999999999763211 1111 3578899999999999999999999999987421
Q ss_pred h--h-hhH-HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh----HHhhhhhhhhhhhhhhh
Q 008806 430 V--G-FFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQKSHVLDCC 487 (553)
Q Consensus 430 ~--~-~~~-~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~----~~~~~i~p~l~~~l~~~ 487 (553)
. . .+. ...+|.+..++.+++..+|..|+.++..+... +++ ......+|.|..+++.+
T Consensus 698 ~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 698 KCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp HHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred HHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCc
Confidence 1 1 222 45889999999999999999999999999873 222 12245788888887643
No 25
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.85 E-value=2.7e-18 Score=179.09 Aligned_cols=447 Identities=13% Similarity=0.089 Sum_probs=323.5
Q ss_pred HHhcCccHHHHHHHhhhHHHHHHhhChHHH------hhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCC-cchh-hc
Q 008806 16 DELKNDDIQLRLNSIRRLSTIARALGEERT------RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG-VEHA-HV 86 (553)
Q Consensus 16 ~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~------~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~-~~ 86 (553)
..+.+++.+....|+.++..+.. |+.+. .+..+|.+.. +.++++.+++.+..+++..+..-.. .... ..
T Consensus 254 ~~~~~~~~~~~~~a~~alt~i~~--g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~g 331 (810)
T 3now_A 254 DKLLAPDMESKVRVTVAITALLN--GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQG 331 (810)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHS--SSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHH
T ss_pred HHhccCChHhHHHHHHHHHHHhc--CCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 34557777777888888887753 22211 3355566666 6778899999999999987653111 1111 12
Q ss_pred chhHHHhhhccchhHHHHHHHHHHHHHHhhcC--h--hh----hhhhHHHHHHHHhcCC--CcchhhhHhhhhHhhcCCC
Q 008806 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMR--E--SD----LVDWYIPLVKRLAAGE--WFTARVSACGLFHIAYPSA 156 (553)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~--~--~~----~~~~~l~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~ 156 (553)
+ |.|..+...+++.+|..|..+|.++..... + .. ....+++.+.+++.++ +.++|..++..+..+....
T Consensus 332 v-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~ 410 (810)
T 3now_A 332 V-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA 410 (810)
T ss_dssp H-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH
T ss_pred c-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc
Confidence 3 778888877788899999999999975332 1 11 1235678888888777 7899999999999987653
Q ss_pred ChH--HH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch-----------------------------------
Q 008806 157 PDI--LK--TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----------------------------------- 197 (553)
Q Consensus 157 ~~~--~~--~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~----------------------------------- 197 (553)
... .. ..++|.+.++++++++.++..++.+|++++...+.+
T Consensus 411 ~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~ 490 (810)
T 3now_A 411 ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITV 490 (810)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHH
Confidence 322 22 468899999999999999999999999999743210
Q ss_pred hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCc--chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Q 008806 198 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275 (553)
Q Consensus 198 ~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~ 275 (553)
.+....+|.|..+++++++.+|..|+.++..++..-.. .......+|.+..++.+.+...|..++++|.+++....++
T Consensus 491 VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~ 570 (810)
T 3now_A 491 LANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570 (810)
T ss_dssp HHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh
Confidence 01224689999999999999999999999999843111 1122347888888888889999999999999998753322
Q ss_pred cc-----ccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCH---HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhh
Q 008806 276 PT-----RMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGM 346 (553)
Q Consensus 276 ~~-----~~~llp~l~~ll~d~-~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l 346 (553)
.. ....+|.+++++..+ +...+..|+.+|..++..-+. .-.....+|.+..++.+.+..+|..++.+++.+
T Consensus 571 ~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NL 650 (810)
T 3now_A 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650 (810)
T ss_dssp HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11 123789999999754 344566788888888764211 112235678888999899999999999999999
Q ss_pred hhhhCHH-hHH--HhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhc---hhhHH-hhHHHHHHHhhcCCCcHHHHHHHH
Q 008806 347 APLLGKD-ATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLS-QSLLPAIVELAEDRHWRVRLAIIE 419 (553)
Q Consensus 347 ~~~~~~~-~~~--~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~---~~~~~-~~ll~~l~~~~~d~~~~vR~~~~~ 419 (553)
+..-... .+. ...+|.+..++..++..+|..|+.+|..+..... ...+. ...+|.|..++.+++..+|..++.
T Consensus 651 a~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp TTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred hCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 8632111 111 2467899999999999999999999999987321 12233 468899999999999999999999
Q ss_pred HHHHHHhhhChhh----hHHHHHHHHHHHccCC---chHHHHHHHHHHHHHHHH
Q 008806 420 YIPLLASQLGVGF----FDDKLGALCMQWLQDK---VYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 420 ~l~~i~~~~~~~~----~~~~l~~~l~~~l~D~---~~~VR~~a~~~l~~l~~~ 466 (553)
++..+... +.+. .....++.+..+++++ +..+++.|.++|..+.+.
T Consensus 731 aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 731 IILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 99999863 2221 2233678888888654 789999999999999864
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.84 E-value=5.7e-19 Score=181.88 Aligned_cols=380 Identities=12% Similarity=0.068 Sum_probs=272.8
Q ss_pred cCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhC-h---HHHhhhhhhhhhh-cCCCc-HHHHHHHHHHhhccccccCCc
Q 008806 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALG-E---ERTRKELIPFLSE-NNDDD-DEVLLAMAEELGVFIPYVGGV 81 (553)
Q Consensus 8 ~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~-~---~~~~~~ll~~l~~-~~d~~-~~vr~~~~~~l~~l~~~~~~~ 81 (553)
...+..++..|.++|+.+|..|+..|..++..-. + .-....++|.+.. +.+++ +++|..++.+|+.++......
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 4458999999999999999999999998865432 1 1123467777777 56655 999999999999998632110
Q ss_pred ---chhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh--h-hhhhhHHHHHHHHh-cCCCcchhhhHhhhhHhhcC
Q 008806 82 ---EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--S-DLVDWYIPLVKRLA-AGEWFTARVSACGLFHIAYP 154 (553)
Q Consensus 82 ---~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~~~-~~~~~~~r~~~~~~l~~l~~ 154 (553)
-.....++.+..++.++++.+|..|+.+|+.++..-+. . ......+|.+.+++ +++++.++..++.+++.++.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 01123667777788888999999999999999864322 1 11223567777777 67788999999999998876
Q ss_pred CCC---hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHH
Q 008806 155 SAP---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA 228 (553)
Q Consensus 155 ~~~---~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~ 228 (553)
... ......+++.+.+++.++++.|+..++.+|+.++...+. ......++|.+..++.++++.+|..|+.+++.
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 532 225577899999999999999999999999998854321 11223578889999999999999999999999
Q ss_pred hhccCCcc---hhhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHH
Q 008806 229 LGKLLEPQ---DCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAA 301 (553)
Q Consensus 229 l~~~~~~~---~~~~~ll~~l~~l~~d~-~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~ 301 (553)
++...+.. .....++|.+..++.+. ++.+|..++.+|+.++..... ......++|.+++++.+.++.+|..|+
T Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 392 (528)
T 4b8j_A 313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 392 (528)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 98643221 12234788888888888 899999999999999852110 011236789999999888899999999
Q ss_pred HHHHHHHHhhCHHHH----HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh---------H-----HHhHHHHH
Q 008806 302 GKVTKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---------T-----IEQLLPIF 363 (553)
Q Consensus 302 ~~l~~~~~~~~~~~~----~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~---------~-----~~~l~p~l 363 (553)
.+|+.++..-+++.. ...+++.+..++.++++.++..++.++..+....+... + ....++.+
T Consensus 393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 472 (528)
T 4b8j_A 393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKI 472 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHH
Confidence 999998876433321 23567888888888999999999999888876443211 0 11223445
Q ss_pred HHhhCCCChHHHHHHHHHHHHhhh
Q 008806 364 LSLLKDEFPDVRLNIISKLDQVNQ 387 (553)
Q Consensus 364 ~~~l~d~~~~VR~~a~~~l~~~~~ 387 (553)
..+..+++.++++.|...+..+..
T Consensus 473 ~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 473 ENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCC
Confidence 555556666666666666665543
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.84 E-value=1.7e-18 Score=178.74 Aligned_cols=442 Identities=13% Similarity=0.044 Sum_probs=295.4
Q ss_pred hhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCc-chh--hcchhHHHh-hhccchhHHHHHHHHHHHHHHhhcCh--
Q 008806 47 KELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV-EHA--HVLLPPLET-LCTVEETCVRDKAVESLCRIGSQMRE-- 119 (553)
Q Consensus 47 ~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~-~~~--~~l~~~l~~-l~~~~~~~vR~~a~~~l~~l~~~~~~-- 119 (553)
...+|.+.. +.++++.+|..++..|..++...... ... ...++.+.. +..++++.+|..++.+|..++..-..
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 344555555 66889999999999999987632211 011 123444444 43455788999999999998654211
Q ss_pred hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhC
Q 008806 120 SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE 195 (553)
Q Consensus 120 ~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~ 195 (553)
.......+|.+.++++++++.++..++..+..++..-... .....++.+.+++.++++.++..++.+|..++..-+
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 1122347888889999999999999999999887653322 235688999999999999999999999998875211
Q ss_pred c---hhhhhhHHHHHHHhhhCCC-hhHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 008806 196 P---AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (553)
Q Consensus 196 ~---~~~~~~l~p~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~ 269 (553)
. .......+|.+..++.+.+ ..++..+..++..++..-... ......+|.+..++.+.+..++..++.++..++
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 0 1122345666777776554 455667778888887532111 122347888889999999999999999999998
Q ss_pred HHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--HHH-HHHhHHHHHHHhccC--CcHHHHHHHHHHHH
Q 008806 270 EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PEL-AIQHILPCVKELSSD--SSQHVRSALASVIM 344 (553)
Q Consensus 270 ~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~--~~~-~~~~l~~~l~~l~~d--~~~~vr~~~~~~l~ 344 (553)
...+.......++|.+.+++.++++++|..++.+|..++..-. .+. .....+|.+.+++.+ .++.+|..++.+++
T Consensus 256 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 7654433345689999999999999999999999998866311 111 123456777777754 44899999999999
Q ss_pred hhhhhhCH------HhHHHhHHHHHHHhhCCCC-hHHHHHHHHHHHHhhhhhch--hhHHhhHHHHHHHhhcCCCcHHHH
Q 008806 345 GMAPLLGK------DATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRL 415 (553)
Q Consensus 345 ~l~~~~~~------~~~~~~l~p~l~~~l~d~~-~~VR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~ 415 (553)
.++...+. .......+|.+..++++++ +.+|..++.+++.+...-.. ......++|.|..++.++++.+|.
T Consensus 336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 415 (529)
T 1jdh_A 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415 (529)
T ss_dssp HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHH
Confidence 99764322 1123356889999998876 59999999999998753221 122356788888888887777777
Q ss_pred HHHHHHH----------------------HHHhhhCh--hhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH--hCh
Q 008806 416 AIIEYIP----------------------LLASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE--FGP 469 (553)
Q Consensus 416 ~~~~~l~----------------------~i~~~~~~--~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~--~~~ 469 (553)
.++.+++ .++..... .......+|.+..++.|++.+||..+..+++.+... ...
T Consensus 416 ~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 495 (529)
T 1jdh_A 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 495 (529)
T ss_dssp ----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 5554443 33221100 011223568888999999999999999999987632 111
Q ss_pred hHHhhhhhhhhhhhhhhhc
Q 008806 470 EWAMQHITPQKSHVLDCCQ 488 (553)
Q Consensus 470 ~~~~~~i~p~l~~~l~~~~ 488 (553)
.......++.|.+++.+++
T Consensus 496 ~i~~~~~~~~L~~l~~~~~ 514 (529)
T 1jdh_A 496 AIEAEGATAPLTELLHSRN 514 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSS
T ss_pred HHHHcCChHHHHHHhcCCC
Confidence 1112345566666655443
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.83 E-value=1.6e-17 Score=175.01 Aligned_cols=446 Identities=13% Similarity=0.051 Sum_probs=307.4
Q ss_pred hhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcc-h--hhcchhHHHh-hhccchhHHHHHHHHHHHHHHhhcCh--
Q 008806 47 KELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE-H--AHVLLPPLET-LCTVEETCVRDKAVESLCRIGSQMRE-- 119 (553)
Q Consensus 47 ~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~-~--~~~l~~~l~~-l~~~~~~~vR~~a~~~l~~l~~~~~~-- 119 (553)
...+|.+.. +.++++.+|..++.+|+.++....... . ....++.+.. +..++++.+|..++.+|..++..-..
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 344555555 567899999999999999987443211 1 1123444444 44445788999999999887754221
Q ss_pred hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhC
Q 008806 120 SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE 195 (553)
Q Consensus 120 ~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~ 195 (553)
.......+|.+.++++++++.+|..++..+..++..-... .....++.+.++++++++.++..++.+|..++...+
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~ 172 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCc
Confidence 1122347888999999999999999999999987654322 235679999999999999999999999999885221
Q ss_pred c---hhhhhhHHHHHHHhhhCCC-hhHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 008806 196 P---AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (553)
Q Consensus 196 ~---~~~~~~l~p~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~ 269 (553)
. .......+|.+..++.+.+ ..++..++.++..++..-... ......++.+.+++.+.+..++..++.+|..++
T Consensus 173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1 1122345777777777654 567888888988887532211 122347888889999999999999999999998
Q ss_pred HHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--H-HHHHhHHHHHHHhccCC--cHHHHHHHHHHHH
Q 008806 270 EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDS--SQHVRSALASVIM 344 (553)
Q Consensus 270 ~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~l~~d~--~~~vr~~~~~~l~ 344 (553)
...........++|.+++++.+.++++|..|+.+|..++..-.. + -.....++.+..++.+. .+.+|..++.+++
T Consensus 253 ~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~ 332 (644)
T 2z6h_A 253 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332 (644)
T ss_dssp GGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 76444333456899999999999999999999999988763111 1 11234677777777653 3799999999999
Q ss_pred hhhhhhCHH------hHHHhHHHHHHHhhCCCC-hHHHHHHHHHHHHhhhhhch--hhHHhhHHHHHHHhhcCCCc----
Q 008806 345 GMAPLLGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHW---- 411 (553)
Q Consensus 345 ~l~~~~~~~------~~~~~l~p~l~~~l~d~~-~~VR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~~~~~d~~~---- 411 (553)
.++...+.. ......+|.+.+++++++ +.+|..++.+++.+...-.. ......++|.|..++.+.++
T Consensus 333 nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~ 412 (644)
T 2z6h_A 333 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 412 (644)
T ss_dssp HHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhh
Confidence 998543321 122357899999998775 69999999999998753211 12335677888777765433
Q ss_pred ------------------HHHHHHHHHHHHHHhhhChhh--hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh--Ch
Q 008806 412 ------------------RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GP 469 (553)
Q Consensus 412 ------------------~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~--~~ 469 (553)
.++..++.++..++....... .....+|.+..++.+.+.+||..++.++..+...- ..
T Consensus 413 ~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 492 (644)
T 2z6h_A 413 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 492 (644)
T ss_dssp C----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHH
Confidence 455566666666654321111 12246789999999999999999999999987431 01
Q ss_pred hHHhhhhhhhhhhhhhhhccccc
Q 008806 470 EWAMQHITPQKSHVLDCCQWSLM 492 (553)
Q Consensus 470 ~~~~~~i~p~l~~~l~~~~~~~~ 492 (553)
.......++.|.+++.+.+..++
T Consensus 493 ~i~~~g~l~~L~~ll~~~~~~vr 515 (644)
T 2z6h_A 493 AIEAEGATAPLTELLHSRNEGVA 515 (644)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHH
T ss_pred HHHHcCChhHHHHHHcCCCHHHH
Confidence 11123456677777766554443
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.82 E-value=1.5e-18 Score=180.79 Aligned_cols=439 Identities=12% Similarity=0.066 Sum_probs=296.1
Q ss_pred CcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhh
Q 008806 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85 (553)
Q Consensus 7 ~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 85 (553)
...-..+.+..+.+++...|..+--.+...+.. .+ +..-..+..+.+ +.++++.+|..|..+++.+.. +....
T Consensus 68 ~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-~~-e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~ 141 (618)
T 1w63_A 68 AHFGQLECLKLIASQKFTDKRIGYLGAMLLLDE-RQ-DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCR 141 (618)
T ss_dssp CGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-CH-HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHH
T ss_pred CcchHHHHHHHHcCCchHHHHHHHHHHHHHhCC-Cc-HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHH
Confidence 333445556666666666665554444433211 11 112234455555 788899999999999988763 34556
Q ss_pred cchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCCh--HHH--
Q 008806 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--ILK-- 161 (553)
Q Consensus 86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~-- 161 (553)
.+.+.+..++.|+++.||+.|+.++..+....++ . .+.+++.+..+++|+++.++.+|+.+++.+...-++ ...
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~-v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~ 219 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-L-MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRK 219 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-G-GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-H-HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 6788888888899999999999999999886542 2 335677788888899999999999999988765322 122
Q ss_pred --HHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhh------CCChhHHHHH
Q 008806 162 --TELRSIYTQLCQ-----------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ------DDQDSVRLLA 222 (553)
Q Consensus 162 --~~l~~~l~~ll~-----------d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~------d~~~~vr~~a 222 (553)
+.++..+.+++. .++++.+..+++.++.++..- ....+.+.+.+..++. +.+..|...|
T Consensus 220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea 297 (618)
T 1w63_A 220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYET 297 (618)
T ss_dssp THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 233333333321 357888888888888877532 2223344555555443 2345788888
Q ss_pred HHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHH
Q 008806 223 VEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAG 302 (553)
Q Consensus 223 ~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~ 302 (553)
++++..+.. .........+.+..++.+.++.+|..+..+|+.++...+.- .....+.+..++.|++..||..|+.
T Consensus 298 ~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~--~~~~~~~i~~~l~d~d~~Ir~~ale 372 (618)
T 1w63_A 298 VLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA--VQRHRSTIVDCLKDLDVSIKRRAME 372 (618)
T ss_dssp HHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH--HGGGHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH--HHHHHHHHHHHccCCChhHHHHHHH
Confidence 888777542 12222345667777788888999999999999998763321 1335677888899999999999999
Q ss_pred HHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHH
Q 008806 303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (553)
Q Consensus 303 ~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l 382 (553)
.+..++..-.- +.+++.+...+.+.+..+|..++.+++.++..+.+. ..+.++.+.+++++....++..++..+
T Consensus 373 lL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l 446 (618)
T 1w63_A 373 LSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNL 446 (618)
T ss_dssp HHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHH
T ss_pred HHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 88887653222 345566666667788999999999999999877544 355678888888877777777777778
Q ss_pred HHhhhhhchhhHHhhHHHHHHHhhcC--CCcHHHHHHHHHHHHHHhhhChh---------hhHHHHHHHHHHHcc--CCc
Q 008806 383 DQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---------FFDDKLGALCMQWLQ--DKV 449 (553)
Q Consensus 383 ~~~~~~~~~~~~~~~ll~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~~~---------~~~~~l~~~l~~~l~--D~~ 449 (553)
..++.... + .....++.+.+.+.+ .+......+++++|..+..+... .....+.+.+..++. ..+
T Consensus 447 ~~ii~~~p-~-l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 524 (618)
T 1w63_A 447 IQLITNSV-E-MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMST 524 (618)
T ss_dssp HHHHHHSC-S-THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCC
T ss_pred HHHHhcCh-h-HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCC
Confidence 87776432 2 234566666666554 34455567899999998765320 111234445555443 568
Q ss_pred hHHHHHHHHHHHHHHHHhC
Q 008806 450 YSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 450 ~~VR~~a~~~l~~l~~~~~ 468 (553)
..||..++.++.++....+
T Consensus 525 ~~vr~~~lta~~Kl~~~~~ 543 (618)
T 1w63_A 525 SVTRGYALTAIMKLSTRFT 543 (618)
T ss_dssp HHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 8999999999999988764
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.82 E-value=1e-17 Score=174.61 Aligned_cols=434 Identities=10% Similarity=0.058 Sum_probs=295.9
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcchhhcch
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 88 (553)
.++.+...|+++++.+|..|+++++.++ ..+..+.+.+.+.. +.|.++.||+.|+.+++.+.+..+ +....++
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~v~~~~ 181 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--ELMEMFL 181 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GGGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HHHHHHH
Confidence 4678888999999999999999999885 33455777888888 889999999999999999887432 3344677
Q ss_pred hHHHhhhccchhHHHHHHHHHHHHHHhhcChh-hhhhhHHHHHH----HHhc-----------CCCcchhhhHhhhhHhh
Q 008806 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRES-DLVDWYIPLVK----RLAA-----------GEWFTARVSACGLFHIA 152 (553)
Q Consensus 89 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-~~~~~~l~~l~----~~~~-----------~~~~~~r~~~~~~l~~l 152 (553)
+.+..++.|+++.|+..|+.++..++..-+.. .....++|.+. ++.. ..++-.+...+++++.+
T Consensus 182 ~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l 261 (618)
T 1w63_A 182 PATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRIL 261 (618)
T ss_dssp GGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHh
Confidence 77888889999999999999999988653220 11122344333 3321 12444566677777777
Q ss_pred cCCCChHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHH
Q 008806 153 YPSAPDILKTELRSIYTQLCQ------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGC 226 (553)
Q Consensus 153 ~~~~~~~~~~~l~~~l~~ll~------d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l 226 (553)
... .++..+.+.+.+.+++. +.+..|...+++++..+.. .........+.+..++.+.+.++|..|+.++
T Consensus 262 ~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L 337 (618)
T 1w63_A 262 GRN-DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSL 337 (618)
T ss_dssp TTT-CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 654 23334445555555542 3455788888888776432 2233345667777788899999999999999
Q ss_pred HHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHH
Q 008806 227 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 306 (553)
Q Consensus 227 ~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~ 306 (553)
..++..-+. ......+.+...+.|++..+|..+++.+..++.. .. .+.+++.+.+.+.+.+.++|..++.+++.
T Consensus 338 ~~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~---~n-v~~iv~eL~~~l~~~d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 338 LKTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG---NN-IRGMMKELLYFLDSCEPEFKADCASGIFL 411 (618)
T ss_dssp HHHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS---SS-THHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc---cc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999865221 2233456677778899999999999988887532 11 24578888888888899999999999999
Q ss_pred HHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCC--CChHHHHHHHHHHHH
Q 008806 307 FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQ 384 (553)
Q Consensus 307 ~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d--~~~~VR~~a~~~l~~ 384 (553)
++..+.+. ....++.+.+++.+....++..++..+..+....+. .....++.+...+.+ ....+...+++.+|+
T Consensus 412 la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGE 487 (618)
T 1w63_A 412 AAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGE 487 (618)
T ss_dssp HHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHH
T ss_pred HHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhh
Confidence 99876433 133445555555555555555555555555543322 123445555555543 233445578999999
Q ss_pred hhhhhchh---------hHHhhHHHHHHHhhc--CCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHH
Q 008806 385 VNQVIGID---------LLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 453 (553)
Q Consensus 385 ~~~~~~~~---------~~~~~ll~~l~~~~~--d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR 453 (553)
++..+... .....+.+.+..+++ ..+..+|..++.++..+....+.. .+.+...+-.+..|.+.+||
T Consensus 488 y~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evr 565 (618)
T 1w63_A 488 YGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQ 565 (618)
T ss_dssp HHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHH
T ss_pred hHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHH
Confidence 98765320 011335555666554 568899999999999988766432 34455555567788999999
Q ss_pred HHHHHHHHHHHH
Q 008806 454 DAAANNLKRLAE 465 (553)
Q Consensus 454 ~~a~~~l~~l~~ 465 (553)
..|...+.-+..
T Consensus 566 dRA~~y~~ll~~ 577 (618)
T 1w63_A 566 QRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 999998776654
No 31
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.78 E-value=1.6e-17 Score=156.10 Aligned_cols=252 Identities=19% Similarity=0.147 Sum_probs=195.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHH
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 244 (553)
++.+.+.++|+++.||..++.+|+.+.. +..+|.+.+++.|+++.+|..|+.+++.+... ......+++
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l~~ 93 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNVFN 93 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHHHH
Confidence 5677778899999999999999997652 35677788889999999999999999887632 112334666
Q ss_pred HHH-HhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHH
Q 008806 245 VIV-NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (553)
Q Consensus 245 ~l~-~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (553)
.+. .+.+|+++.||..++.+|+.+....+ ...+.++|.+..+++|+++.||..|+.+|+.+.. +..+|.
T Consensus 94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~ 163 (280)
T 1oyz_A 94 ILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPL 163 (280)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHH
Confidence 666 35789999999999999999875422 1124688999999999999999999999987543 346788
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHH
Q 008806 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (553)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~ 403 (553)
+..++.|+++.||..++.+++.+... .+..+|.+...++|+++.||..++.+|+.+.. +..+|.|.
T Consensus 164 L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L~ 229 (280)
T 1oyz_A 164 LINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLC 229 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHHH
Confidence 88888999999999999999887421 13467888899999999999999999998763 45677777
Q ss_pred HhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccC-CchHHHHHHHHHHH
Q 008806 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLK 461 (553)
Q Consensus 404 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D-~~~~VR~~a~~~l~ 461 (553)
..+.|++ +|..++.+++.+.. +..+|.+..++.+ ++.+++..+++.+.
T Consensus 230 ~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 230 DELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 7887765 88888888887752 2466777777765 56778888777764
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.78 E-value=5.2e-16 Score=158.29 Aligned_cols=377 Identities=11% Similarity=0.071 Sum_probs=272.5
Q ss_pred hhHHHhhhccchhHHHHHHHHHHHHHHhhcC--h--hhhhhhHHHHHHHHhc-CCCcchhhhHhhhhHhhcCCCChH---
Q 008806 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMR--E--SDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI--- 159 (553)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~--~--~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~--- 159 (553)
++-+.+.+..+|.+.+..|...+.++...-. + ..+..-++|.+.++++ ++++.++..|+.+++.++..-.+.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3444455567778888889999988765322 1 2234447898888876 455789999999999998654333
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCCh-----hHHHHHHHHHHHhh
Q 008806 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQD-----SVRLLAVEGCAALG 230 (553)
Q Consensus 160 -~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~-----~vr~~a~~~l~~l~ 230 (553)
.....+|.+.+++++++..||+.++.+|+.++...+. .......++.+..++.+.+. .+...++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 1234689999999999999999999999999863221 11223456777777765442 35666778888887
Q ss_pred ccCCcc---hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHHH
Q 008806 231 KLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304 (553)
Q Consensus 231 ~~~~~~---~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~l 304 (553)
..-... .....++|.+.+++.+.++.++..++.+|..++..-.. ......++|.+++++.+.+..++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 653221 23356899999999999999999999999988742110 011235789999999999999999999999
Q ss_pred HHHHHhhCHH---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH---hHHHhHHHHHHHhhCCCChHHHHHH
Q 008806 305 TKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNI 378 (553)
Q Consensus 305 ~~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~VR~~a 378 (553)
+.++..-+.. -.....++.+..++.+++..+|..++++++.++..-... .....++|.+..++++.+..+|..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 9886532111 123456788888999999999999999999998532221 1234678999999999999999999
Q ss_pred HHHHHHhhhhhchhh----HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh---Chh-hhHH-----HHHHHHHHHc
Q 008806 379 ISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVG-FFDD-----KLGALCMQWL 445 (553)
Q Consensus 379 ~~~l~~~~~~~~~~~----~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~-~~~~-----~l~~~l~~~l 445 (553)
+.+|..++..-..+. ....+++.|..++.+++..++..++.++..|.... +.. .+.. ..+..+..+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 999999886544332 23567888999999999999999999999887642 222 1211 1345666677
Q ss_pred cCCchHHHHHHHHHHHHHH
Q 008806 446 QDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 446 ~D~~~~VR~~a~~~l~~l~ 464 (553)
.+++.+|++.|.+.+.+..
T Consensus 459 ~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 459 RHENESVYKASLNLIEKYF 477 (510)
T ss_dssp GCSSHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHC
Confidence 7889999999888766543
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.77 E-value=7.1e-16 Score=158.21 Aligned_cols=378 Identities=11% Similarity=0.070 Sum_probs=274.2
Q ss_pred chhHHHhhhccchhHHHHHHHHHHHHHHhhcCh----hhhhhhHHHHHHHHhc-CCCcchhhhHhhhhHhhcCCCChH--
Q 008806 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI-- 159 (553)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~-- 159 (553)
.++-+...+..++...+..|+..+.++...-.. ..+..-++|.+.+++. ++++.++..|+.+++.++..-+..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344455555667778888888888887643221 2234458888888875 556889999999999998765443
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCCh-----hHHHHHHHHHHHh
Q 008806 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQD-----SVRLLAVEGCAAL 229 (553)
Q Consensus 160 --~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~-----~vr~~a~~~l~~l 229 (553)
.....+|.+.+++.+++..||+.++.+|+.++..-+. .......++.+..++.+.+. .+...++.++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 2234789999999999999999999999999853211 11223456777777765442 3566677788888
Q ss_pred hccCCcc---hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHH
Q 008806 230 GKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGK 303 (553)
Q Consensus 230 ~~~~~~~---~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~ 303 (553)
+..-... .....++|.+.+++.+.++.++..++.+|..++..... ......++|.+++++.+++..++..++.+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a 316 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence 7653221 23356899999999999999999999999988743111 01124588999999999999999999999
Q ss_pred HHHHHHhhCHH---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH---hHHHhHHHHHHHhhCCCChHHHHH
Q 008806 304 VTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLN 377 (553)
Q Consensus 304 l~~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~VR~~ 377 (553)
++.++..-+.. ......++.+..++.+++..+|..++++++.++..-... .....++|.+..++.+.+..+|..
T Consensus 317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 396 (529)
T 3tpo_A 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKA 396 (529)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHH
Confidence 99886532111 123457888999999999999999999999998532221 123467899999999999999999
Q ss_pred HHHHHHHhhhhhchhh----HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh---Chh-hhHHH-----HHHHHHHH
Q 008806 378 IISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVG-FFDDK-----LGALCMQW 444 (553)
Q Consensus 378 a~~~l~~~~~~~~~~~----~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~-~~~~~-----l~~~l~~~ 444 (553)
|+.+|..++..-..+. ....+++.|..++.+++..++..++.++..|.... +.. .+... .+..+..+
T Consensus 397 A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L 476 (529)
T 3tpo_A 397 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 476 (529)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH
Confidence 9999999886544332 23457888999999999999999999999887542 222 12111 23455556
Q ss_pred ccCCchHHHHHHHHHHHHHH
Q 008806 445 LQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 445 l~D~~~~VR~~a~~~l~~l~ 464 (553)
..+++.+|++.|...+.+..
T Consensus 477 q~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 477 QRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp GGCSSHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHC
Confidence 77889999999988776553
No 34
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.77 E-value=1.8e-16 Score=161.64 Aligned_cols=377 Identities=12% Similarity=0.057 Sum_probs=260.3
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhC-h--HH-Hhhhhhhhhhh-cC-CCcHHHHHHHHHHhhccccccCCcc-
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALG-E--ER-TRKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGVE- 82 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~-~--~~-~~~~ll~~l~~-~~-d~~~~vr~~~~~~l~~l~~~~~~~~- 82 (553)
.|+.++..++|+|...+..|...+.++...-. | +. ....++|.|.+ +. ++++++|..++.+|++++.......
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 48999999999999999999998887642211 1 11 23456777777 44 5678999999999999976322110
Q ss_pred --hhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh--h-hhhhhHHHHHHHHhcCCCcc-----hhhhHhhhhHhh
Q 008806 83 --HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--S-DLVDWYIPLVKRLAAGEWFT-----ARVSACGLFHIA 152 (553)
Q Consensus 83 --~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~~~~~~~~~-----~r~~~~~~l~~l 152 (553)
...-.+|.|..++.+++..+|..|+.+|+.++..-+. + ......++.+..++.+++.. ....++..+..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 1123567788888899999999999999999865322 1 12233566777777654432 233455556655
Q ss_pred cCCCC----hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHHHHHHH
Q 008806 153 YPSAP----DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEG 225 (553)
Q Consensus 153 ~~~~~----~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~~~ 225 (553)
...-. ......+++.+.+++.++++.|+..++.+|..++..-.. ......++|.+..++.+++..++..++.+
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 54322 125578899999999999999999999999998864221 11234578889999999999999999999
Q ss_pred HHHhhccCCcc---hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHH
Q 008806 226 CAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIA 299 (553)
Q Consensus 226 l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~ 299 (553)
++.++..-+.. ......++.+..++.+.+..+|..++.+|++++..-.. ......++|.++.++.+.+..+|..
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 377 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHH
Confidence 99987643221 12234677788888999999999999999998742111 0112358899999999999999999
Q ss_pred HHHHHHHHHHhhCHHHH----HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhC---HHh-H-----HHhHHHHHHHh
Q 008806 300 AAGKVTKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDA-T-----IEQLLPIFLSL 366 (553)
Q Consensus 300 a~~~l~~~~~~~~~~~~----~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~---~~~-~-----~~~l~p~l~~~ 366 (553)
|+.+|..++..-..+.. ....++.+..++.++++.++..++.++..+..... ... + ....+..+..+
T Consensus 378 Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L 457 (510)
T 3ul1_B 378 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 457 (510)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH
Confidence 99999998876544432 23467888889999999999999888888765321 111 0 01123334444
Q ss_pred hCCCChHHHHHHHHHHHHhh
Q 008806 367 LKDEFPDVRLNIISKLDQVN 386 (553)
Q Consensus 367 l~d~~~~VR~~a~~~l~~~~ 386 (553)
...++.+|++.|...+..+.
T Consensus 458 q~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 458 QRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp GGCSSHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHC
Confidence 44555666666655555443
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.76 E-value=4.6e-16 Score=159.60 Aligned_cols=377 Identities=12% Similarity=0.063 Sum_probs=261.7
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhhHHHHHHhh-Ch---HHHhhhhhhhhhh-c-CCCcHHHHHHHHHHhhccccccCCc-
Q 008806 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARAL-GE---ERTRKELIPFLSE-N-NDDDDEVLLAMAEELGVFIPYVGGV- 81 (553)
Q Consensus 9 ~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~-~~---~~~~~~ll~~l~~-~-~d~~~~vr~~~~~~l~~l~~~~~~~- 81 (553)
..+..++.++.|+|+..+..|+..+..+...- .| .-....++|.+.+ + .+++++++..++.+|.+++......
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 45899999999999999999988887664221 11 1223567777777 4 4567999999999999998643221
Q ss_pred --chhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh--h-hhhhhHHHHHHHHhcCCCcc-----hhhhHhhhhHh
Q 008806 82 --EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--S-DLVDWYIPLVKRLAAGEWFT-----ARVSACGLFHI 151 (553)
Q Consensus 82 --~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~~~~~~~~~-----~r~~~~~~l~~ 151 (553)
-...-.+|.|..++.+++..+|..|+.+|+.++..-+. . ....-.++.+..++.+++.. ....++..+..
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 11123567788888899999999999999999864322 1 12233566677776654422 23345555666
Q ss_pred hcCCCCh----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHHHHHH
Q 008806 152 AYPSAPD----ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVE 224 (553)
Q Consensus 152 l~~~~~~----~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~~ 224 (553)
+...-.+ .....++|.+.+++.++++.|+..++.+|..++..... ......++|.+..++.+++..++..++.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 5543322 25678899999999999999999999999998864321 1123457888999999999999999999
Q ss_pred HHHHhhccCCcc---hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHH
Q 008806 225 GCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRI 298 (553)
Q Consensus 225 ~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~ 298 (553)
+++.++..-+.. ......++.+..++.+.+..+|..++.+|+.++..-.. ......++|.++.++.+.+..+|.
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 395 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 395 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHH
Confidence 999998643221 12334778888999999999999999999998753111 011235889999999999999999
Q ss_pred HHHHHHHHHHHhhCHHHH----HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhC---HH-hHHH-----hHHHHHHH
Q 008806 299 AAAGKVTKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KD-ATIE-----QLLPIFLS 365 (553)
Q Consensus 299 ~a~~~l~~~~~~~~~~~~----~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~---~~-~~~~-----~l~p~l~~ 365 (553)
.|+.+|..++..-..+.. ...+++.+..++.++++.++..++.++..+..... .. .+.. ..+..+..
T Consensus 396 ~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~ 475 (529)
T 3tpo_A 396 AAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA 475 (529)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHH
Confidence 999999998876544432 23467888899999999999999888888764321 11 0000 11233333
Q ss_pred hhCCCChHHHHHHHHHHHHh
Q 008806 366 LLKDEFPDVRLNIISKLDQV 385 (553)
Q Consensus 366 ~l~d~~~~VR~~a~~~l~~~ 385 (553)
+..+++.+|++.|...+..+
T Consensus 476 Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 476 LQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp GGGCSSHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHH
Confidence 44455566666665555544
No 36
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.75 E-value=5.6e-16 Score=160.75 Aligned_cols=445 Identities=10% Similarity=0.046 Sum_probs=290.5
Q ss_pred CCCcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCCcch
Q 008806 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (553)
Q Consensus 5 ~~~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 83 (553)
.|.-.-..+.+..+.++|...|..+--.+..++.. .+ +..--.+..+++ +.|+++.+|..|..+++.+.. +..
T Consensus 70 ~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~-~~-e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~ 143 (621)
T 2vgl_A 70 HDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS-NS-ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS----REM 143 (621)
T ss_dssp CCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC-CH-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHH
T ss_pred CCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccC-Cc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHH
Confidence 34444566666777777777776665555544321 11 212233445555 778888888888888887743 356
Q ss_pred hhcchhHHHhhh--ccchhHHHHHHHHHHHHHHhhcChhhhh-hhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH-
Q 008806 84 AHVLLPPLETLC--TVEETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI- 159 (553)
Q Consensus 84 ~~~l~~~l~~l~--~~~~~~vR~~a~~~l~~l~~~~~~~~~~-~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~- 159 (553)
...+.+.+..++ .|.++.||+.|+.++.++....+ +.+. ..+++.+.++++|+++.++.+++.++..+...-+..
T Consensus 144 ~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~ 222 (621)
T 2vgl_A 144 AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF 222 (621)
T ss_dssp HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH
Confidence 667777777777 78889999999988888887543 3332 257788888888888888888888888876543322
Q ss_pred --HHHHHHHHHHHhcCCC-------------CHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhh---hC--------
Q 008806 160 --LKTELRSIYTQLCQDD-------------MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT---QD-------- 213 (553)
Q Consensus 160 --~~~~l~~~l~~ll~d~-------------~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~---~d-------- 213 (553)
..+.++..+.+++.++ +++.+....+.++.++.. ++....+.+.+.+..++ .+
T Consensus 223 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 223 KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 3444555555554321 577777777766655432 11223333333333222 11
Q ss_pred -CC--hhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC
Q 008806 214 -DQ--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 290 (553)
Q Consensus 214 -~~--~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~ 290 (553)
.+ ..|...|+.++..+. +...........+..++.+.++.+|..+..++..++...+.........+.++.+++
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~ 378 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALK 378 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhc
Confidence 12 256666666666654 233344556777888888889999999999999997653321112345677777788
Q ss_pred -CCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCC
Q 008806 291 -DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 369 (553)
Q Consensus 291 -d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d 369 (553)
|++..||..++..+..++. .+. .+.++..+...+.+.+...|..++..++.++..+.+. ..+.+..+.+++.+
T Consensus 379 ~d~d~~Ir~~aL~lL~~l~~---~~N-v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~ 452 (621)
T 2vgl_A 379 TERDVSVRQRAVDLLYAMCD---RSN-AQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRI 452 (621)
T ss_dssp TCCCHHHHHHHHHHHHHHCC---HHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHH
T ss_pred cCCCHhHHHHHHHHHHHHcC---hhh-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHh
Confidence 9999999988887766543 333 3667777777777888999999999999999877654 35567777777766
Q ss_pred CChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCc--HHHHHHHHHHHHHHhhhChhh-h-HHHHHHHHHHHc
Q 008806 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGF-F-DDKLGALCMQWL 445 (553)
Q Consensus 370 ~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~--~vR~~~~~~l~~i~~~~~~~~-~-~~~l~~~l~~~l 445 (553)
....+...+...+..++.... ......+..+.+.+.++.. .+-..++..+|+.+..+.... . ...++..+...+
T Consensus 453 ~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~ 530 (621)
T 2vgl_A 453 AGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKF 530 (621)
T ss_dssp HGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHh
Confidence 545566666666666654322 2335556667777777653 344456688888876553321 1 123455666667
Q ss_pred cCCchHHHHHHHHHHHHHHHHhC
Q 008806 446 QDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 446 ~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
.+....||..++.++.++....+
T Consensus 531 ~~~~~~v~~~~Lta~~Kl~~~~p 553 (621)
T 2vgl_A 531 HLCSVPTRALLLSTYIKFVNLFP 553 (621)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCG
T ss_pred ccCCHHHHHHHHHHHHHHHHHCh
Confidence 78899999999999999987653
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.75 E-value=1.3e-16 Score=149.75 Aligned_cols=252 Identities=19% Similarity=0.191 Sum_probs=183.4
Q ss_pred HHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHH
Q 008806 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 206 (553)
Q Consensus 127 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~ 206 (553)
++.+...++|+++.+|..++..++.+.. ...++.+.++++|+++.||..++.+|+.+... ......+++.
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l~~~ 94 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNVFNI 94 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHHHHH
Confidence 4555666677777788888777777652 34567777788888999999999888876521 2223446666
Q ss_pred HH-HhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHH
Q 008806 207 FE-DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 285 (553)
Q Consensus 207 l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l 285 (553)
+. .+++|+++.||..++.+++.++...+. ....+++.+...++|+++.||..++.+++.+.. +..+|.+
T Consensus 95 L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L 164 (280)
T 1oyz_A 95 LNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLL 164 (280)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHH
Confidence 65 356788899999999999888743221 234577888888899999999999999887642 3478888
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHH
Q 008806 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS 365 (553)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~ 365 (553)
.++++|+++.||..|+.+|+.+... .+..+|.+...++|+++.||..++.+++.+.. +..+|.+..
T Consensus 165 ~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L~~ 230 (280)
T 1oyz_A 165 INLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLCD 230 (280)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHHHH
Confidence 8999999999999999998876311 13456777788889999999999999988862 345777888
Q ss_pred hhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcC-CCcHHHHHHHHHHH
Q 008806 366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIP 422 (553)
Q Consensus 366 ~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d-~~~~vR~~~~~~l~ 422 (553)
.++|++ ||..++.+++.+.. +..+|.|..++.+ ++..++..++..+.
T Consensus 231 ~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 231 ELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 888754 88899888887754 3567778877754 46667766666553
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.73 E-value=7.5e-15 Score=152.32 Aligned_cols=434 Identities=12% Similarity=0.069 Sum_probs=283.6
Q ss_pred cHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-c--CCCcHHHHHHHHHHhhccccccCCcchhh-
Q 008806 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N--NDDDDEVLLAMAEELGVFIPYVGGVEHAH- 85 (553)
Q Consensus 10 ~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~--~d~~~~vr~~~~~~l~~l~~~~~~~~~~~- 85 (553)
.++.+...|+++++.+|-.|+++++.+. ..+..+.+.|.+.. + .|.++.||+.|+.++.++.+..++ ...
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~----~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~ 185 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVG----SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPM 185 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHC----CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccC----CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCc
Confidence 3677888999999999999999999873 34456788888888 6 899999999999999998874332 222
Q ss_pred -cchhHHHhhhccchhHHHHHHHHHHHHHHhhcChh--hhhhhHHHHHHHHhcCC-------------CcchhhhHhhhh
Q 008806 86 -VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGE-------------WFTARVSACGLF 149 (553)
Q Consensus 86 -~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~~~~~-------------~~~~r~~~~~~l 149 (553)
.+.+.+..++.|+++.|...|+.++..++..-+.. ...+.+...+.++..+. ++-.+...++++
T Consensus 186 ~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll 265 (621)
T 2vgl_A 186 GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLL 265 (621)
T ss_dssp CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHG
T ss_pred hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHH
Confidence 57778888889999999999999999998764321 11223444444544321 233555566666
Q ss_pred HhhcCCCChHHHHHHHHHHHHhc---CC-C----------CHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCC
Q 008806 150 HIAYPSAPDILKTELRSIYTQLC---QD-D----------MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ 215 (553)
Q Consensus 150 ~~l~~~~~~~~~~~l~~~l~~ll---~d-~----------~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~ 215 (553)
+.+.+.-.++..+.+.+.+..++ .+ + ...|-..+++++-.+. +...........+..++.+.+
T Consensus 266 ~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~ 342 (621)
T 2vgl_A 266 QCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRE 342 (621)
T ss_dssp GGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSC
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCC
Confidence 66654333444444444333332 22 1 1245555555544432 334455667777888888899
Q ss_pred hhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcH
Q 008806 216 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 294 (553)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~ 294 (553)
.++|..++.++..++...+.........+.+...+. |++..+|..+.+.+..++.. ...+.++..+.+.+.+.+.
T Consensus 343 ~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~ 418 (621)
T 2vgl_A 343 TNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADY 418 (621)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCH
T ss_pred cchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCH
Confidence 999999999999998765422233444556666667 99999999998888777532 1235678888888888889
Q ss_pred HHHHHHHHHHHHHHHhhCH--HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCC-
Q 008806 295 EVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF- 371 (553)
Q Consensus 295 ~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~- 371 (553)
+.|..++.+++.++..+.+ +++.+.++ +++.+....+...+...+..+....+. .....+..+...+.|+.
T Consensus 419 ~~~~~~v~~I~~la~k~~~~~~~~v~~Ll----~ll~~~~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~ 492 (621)
T 2vgl_A 419 SIREEIVLKVAILAEKYAVDYTWYVDTIL----NLIRIAGDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPAC 492 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCSSTHHHHHHHH----HHHHHHGGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHH----HHHHhhcccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccc
Confidence 9999999999999887653 34444444 444333333444444444444432221 23344555667777654
Q ss_pred -hHHHHHHHHHHHHhhhhhchhh-H-HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHcc--
Q 008806 372 -PDVRLNIISKLDQVNQVIGIDL-L-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-- 446 (553)
Q Consensus 372 -~~VR~~a~~~l~~~~~~~~~~~-~-~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-- 446 (553)
..+-..++..+|+.+..+.... . ...++..+.....+.+..+|..++.++..+....+. ..+.+...+.....
T Consensus 493 ~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~ 570 (621)
T 2vgl_A 493 HENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLK 570 (621)
T ss_dssp CHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHS
T ss_pred hHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCC
Confidence 2455667799998877654311 0 123455565566778899999999999988765432 22333333333455
Q ss_pred CCchHHHHHHHHHHHHHH
Q 008806 447 DKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 447 D~~~~VR~~a~~~l~~l~ 464 (553)
|.+.+||+.|..-+.-+.
T Consensus 571 ~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 571 NADVELQQRAVEYLRLST 588 (621)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHc
Confidence 899999999998766553
No 39
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.72 E-value=3.1e-14 Score=156.74 Aligned_cols=471 Identities=10% Similarity=0.046 Sum_probs=289.2
Q ss_pred HHHHHhcC--ccHHHHHHHhhhHHHHHHh-hC--------hHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCC
Q 008806 13 VLIDELKN--DDIQLRLNSIRRLSTIARA-LG--------EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG 80 (553)
Q Consensus 13 ~ll~~L~~--~d~~~R~~a~~~l~~i~~~-~~--------~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~ 80 (553)
.++..+.+ .+..+|..|+-.+...... .. +++.+..+...+.+ +.+.+..+|..++.++..++..-..
T Consensus 39 ~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p 118 (960)
T 1wa5_C 39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118 (960)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc
Confidence 44455533 4678899998888865433 21 22334444444444 3344588999999999999875333
Q ss_pred cchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh----hhh-------hhh----HHHHHHHH---hcCCCc---
Q 008806 81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE----SDL-------VDW----YIPLVKRL---AAGEWF--- 139 (553)
Q Consensus 81 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~-------~~~----~l~~l~~~---~~~~~~--- 139 (553)
..|..+++.+.+.+++++...+..++.++..+++.... +.. ... ++.++... ..++..
T Consensus 119 -~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~ 197 (960)
T 1wa5_C 119 -DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKA 197 (960)
T ss_dssp -TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CH
T ss_pred -cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 56888999888887777778889999999999986531 111 111 12222222 333321
Q ss_pred chh------hhHhhhhHhhcC-CCChH---HHHHHHHHHHHhcCC-----------CC----HHHHHHHHHHHHHHHhhh
Q 008806 140 TAR------VSACGLFHIAYP-SAPDI---LKTELRSIYTQLCQD-----------DM----PMVRRSAASNLGKFAATV 194 (553)
Q Consensus 140 ~~r------~~~~~~l~~l~~-~~~~~---~~~~l~~~l~~ll~d-----------~~----~~Vr~~a~~~l~~l~~~~ 194 (553)
.+| ..+++++..+.. ..+.. ......+.+.+++.. .+ +.+|+.+++++..++...
T Consensus 198 ~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~ 277 (960)
T 1wa5_C 198 SLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRY 277 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 123 234455544432 22332 224455666654421 11 468899999999888765
Q ss_pred Cch--hhhhhHHHHHHHhhh-----CCChhHHHHHHHHHHHhhccC------CcchhhhchH-HHHHHhc----------
Q 008806 195 EPA--HLKTDIMSIFEDLTQ-----DDQDSVRLLAVEGCAALGKLL------EPQDCVAHIL-PVIVNFS---------- 250 (553)
Q Consensus 195 ~~~--~~~~~l~p~l~~~~~-----d~~~~vr~~a~~~l~~l~~~~------~~~~~~~~ll-~~l~~l~---------- 250 (553)
++. .....+++.+.+.+. ..++.++..+++.+..+++.- ....+...++ +.+...+
T Consensus 278 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w 357 (960)
T 1wa5_C 278 EDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELF 357 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHH
Confidence 532 123345555555553 346788999999998876531 1111222233 2222211
Q ss_pred -------------CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC------CCcHHHHHHHHHHHHHHHHhh
Q 008806 251 -------------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR------DNEAEVRIAAAGKVTKFCRIL 311 (553)
Q Consensus 251 -------------~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~------d~~~~vr~~a~~~l~~~~~~~ 311 (553)
.+..+..|.++...+..++..++ +...+.+++.+.+.+. ++++..|.+|+.+++.++...
T Consensus 358 ~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~ 436 (960)
T 1wa5_C 358 EDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436 (960)
T ss_dssp TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSS
T ss_pred hcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHh
Confidence 12335689999999999998876 3223456666666665 677899999999999997532
Q ss_pred -----CHH------HHHHhHHHHHHHhccCC---cHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHH
Q 008806 312 -----NPE------LAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN 377 (553)
Q Consensus 312 -----~~~------~~~~~l~~~l~~l~~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~ 377 (553)
+.. .+.+.+...+...+.|+ ++.+|..++++++.++..+.++ ....++|.+.+.+.|++..||..
T Consensus 437 ~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~ 515 (960)
T 1wa5_C 437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTY 515 (960)
T ss_dssp CCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHH
T ss_pred ccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHH
Confidence 111 22222223333444566 8999999999999999988655 46778899999999999999999
Q ss_pred HHHHHHHhhhhhc----------hhh---HHhhHHHHHHHhhcCCC-----cHHHHHHHHHHHHHHhhhChh--hhHHHH
Q 008806 378 IISKLDQVNQVIG----------IDL---LSQSLLPAIVELAEDRH-----WRVRLAIIEYIPLLASQLGVG--FFDDKL 437 (553)
Q Consensus 378 a~~~l~~~~~~~~----------~~~---~~~~ll~~l~~~~~d~~-----~~vR~~~~~~l~~i~~~~~~~--~~~~~l 437 (553)
|+.++..++.... .+. +.+.+++.|..+++... ......++.+++.++...+.+ .+...+
T Consensus 516 A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l 595 (960)
T 1wa5_C 516 AAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQL 595 (960)
T ss_dssp HHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHH
T ss_pred HHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999887432 222 22556666666665531 113357788888888776653 234445
Q ss_pred HHHHHHHc----cC-CchHHHHHHHHHHHHHHHHhChhHH---hhhhhhhhhhhhhh
Q 008806 438 GALCMQWL----QD-KVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQKSHVLDC 486 (553)
Q Consensus 438 ~~~l~~~l----~D-~~~~VR~~a~~~l~~l~~~~~~~~~---~~~i~p~l~~~l~~ 486 (553)
++.+...+ ++ .+...+..++++++.++...+++.. .+.++|.+..+++.
T Consensus 596 ~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~ 652 (960)
T 1wa5_C 596 LAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSE 652 (960)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Confidence 55444332 33 4567888899999999988664322 35677777776653
No 40
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.70 E-value=2.4e-14 Score=157.66 Aligned_cols=452 Identities=14% Similarity=0.090 Sum_probs=286.2
Q ss_pred HHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCC----cch----
Q 008806 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG----VEH---- 83 (553)
Q Consensus 13 ~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~----~~~---- 83 (553)
.++..+.+++..+|..+...++.++....| +.|++++|.+.+ +.++++..+..+..++..+++.... +..
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l 167 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEI 167 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 456667777799999999999999988777 459999999998 6666777788888888888774431 111
Q ss_pred ---h----hcchhHHHhh---hccchh---HHH------HHHHHHHHHHHhhcChhhhh---hhHHHHHHHHhcC-----
Q 008806 84 ---A----HVLLPPLETL---CTVEET---CVR------DKAVESLCRIGSQMRESDLV---DWYIPLVKRLAAG----- 136 (553)
Q Consensus 84 ---~----~~l~~~l~~l---~~~~~~---~vR------~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~~~~----- 136 (553)
. ..++.++... ..+.+. .+| ..+++++..+...--++... ..+++.+.+.+..
T Consensus 168 ~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 247 (960)
T 1wa5_C 168 KLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLL 247 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 1 1122333222 232211 133 23444444433211122222 2344555554421
Q ss_pred -----CC-----cchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHhhhC---
Q 008806 137 -----EW-----FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQ-----DDMPMVRRSAASNLGKFAATVE--- 195 (553)
Q Consensus 137 -----~~-----~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~-----d~~~~Vr~~a~~~l~~l~~~~~--- 195 (553)
+. +.+|..+++++..+....++. +...+++.+.+.+. ..+..++..++.-+..+++.-.
T Consensus 248 ~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~ 327 (960)
T 1wa5_C 248 EDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFE 327 (960)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHG
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHH
Confidence 01 346777888887776655444 44566666666553 4566888888888877764211
Q ss_pred ---chhhhhhHH-HHHHHhh-----------------------hCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHH
Q 008806 196 ---PAHLKTDIM-SIFEDLT-----------------------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248 (553)
Q Consensus 196 ---~~~~~~~l~-p~l~~~~-----------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 248 (553)
.......++ +.+...+ .++.+++|.+|...+..++...+ +...+.+++++.+
T Consensus 328 ~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~ 406 (960)
T 1wa5_C 328 IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKG 406 (960)
T ss_dssp GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHH
Confidence 112223333 2222211 11234789999999999998877 4455667777766
Q ss_pred hcC------CCCHHHHHHHHHHHHHHHHHhC-CC-cccc-----chHHHHH----HhcCCC---cHHHHHHHHHHHHHHH
Q 008806 249 FSQ------DKSWRVRYMVANQLYELCEAVG-PE-PTRM-----DLVPAYV----RLLRDN---EAEVRIAAAGKVTKFC 308 (553)
Q Consensus 249 l~~------d~~~~vR~~~~~~l~~l~~~~~-~~-~~~~-----~llp~l~----~ll~d~---~~~vr~~a~~~l~~~~ 308 (553)
.+. +.+|+.|.++..+++.++.... .+ .... .+.+.+. ..+.|+ .+-+|..|+.++++++
T Consensus 407 ~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~ 486 (960)
T 1wa5_C 407 FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFR 486 (960)
T ss_dssp HHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTG
T ss_pred HHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHH
Confidence 655 6789999999999999986421 11 1111 4555443 334666 8999999999999999
Q ss_pred HhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhC----------HHh---HHHhHHHHHHHhhCCCC----
Q 008806 309 RILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----------KDA---TIEQLLPIFLSLLKDEF---- 371 (553)
Q Consensus 309 ~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~----------~~~---~~~~l~p~l~~~l~d~~---- 371 (553)
+.+.++ ....+++.+...+.|++..||..++.++..++.... .+. +.+.+++.+..+++...
T Consensus 487 ~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~ 565 (960)
T 1wa5_C 487 NQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPE 565 (960)
T ss_dssp GGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHH
T ss_pred hhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCC
Confidence 988655 467888999888899999999999999999887432 222 24555666666665531
Q ss_pred -hHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHh----hcC-CCcHHHHHHHHHHHHHHhhhChh---hhHHHHHHH
Q 008806 372 -PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVEL----AED-RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGAL 440 (553)
Q Consensus 372 -~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~----~~d-~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~ 440 (553)
....+.+..+++.++...+.+. +...+++.+... .++ .+...+..++++++.++...+++ .+.+.++|.
T Consensus 566 ~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~ 645 (960)
T 1wa5_C 566 KLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPT 645 (960)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 1134677888888887766432 123444444433 233 35677878999999999876654 355678888
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 441 CMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 441 l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
+...++.....+...+...++.+....
T Consensus 646 ~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 646 FLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 888877666677888888888777653
No 41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=3.6e-15 Score=136.50 Aligned_cols=203 Identities=15% Similarity=0.169 Sum_probs=125.3
Q ss_pred chhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhC
Q 008806 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILN 312 (553)
Q Consensus 236 ~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~llp~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~ 312 (553)
.+....+-+.+.+.++|++|..|.+++..|..++...+.- .....+++.+...+. |.+..||.+|+.+++.++..++
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 3344455555666777888888888888888887763321 112346666666663 7777777777777776665444
Q ss_pred HHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh
Q 008806 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (553)
Q Consensus 313 ~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 392 (553)
+. + ......++|.+...++|.+..||.++..++..++...+.
T Consensus 90 ~~-----------------------------------~--~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~- 131 (242)
T 2qk2_A 90 KR-----------------------------------F--SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL- 131 (242)
T ss_dssp GG-----------------------------------G--HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-
T ss_pred hh-----------------------------------H--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-
Confidence 21 0 011234555555555555555666655555555554442
Q ss_pred hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh----hhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 393 ~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
+.++|.+...+.+++|.+|..++.+++.+....++ ..+.+.++|.+..++.|+...||.+|..+++.++..+|
T Consensus 132 ---~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 132 ---EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp ---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 34566666666677777777777777776555432 23556777777777777777777777777777777777
Q ss_pred hhHHhhhhhhhh
Q 008806 469 PEWAMQHITPQK 480 (553)
Q Consensus 469 ~~~~~~~i~p~l 480 (553)
++.. ...++.|
T Consensus 209 ~~~~-~~~l~~L 219 (242)
T 2qk2_A 209 DKAV-TPLLADV 219 (242)
T ss_dssp HHHH-GGGGTTS
T ss_pred HHHH-HHHHHhc
Confidence 6543 3444544
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=4.3e-15 Score=135.96 Aligned_cols=199 Identities=13% Similarity=0.082 Sum_probs=156.7
Q ss_pred HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH--HhHHHhHHHHHHHhh-CCCChHHHHHHHHHHHHhhhhhc
Q 008806 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIG 390 (553)
Q Consensus 314 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~~l-~d~~~~VR~~a~~~l~~~~~~~~ 390 (553)
..+...+-+.+.+.++|++|..|..++..+..++...+. ......+++.+...+ +|.+..||..++.+++.++..+|
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 333455556677788899999999999999888776221 112356788999999 49999999999999999999988
Q ss_pred hhh--HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 391 IDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 391 ~~~--~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
... +...++|.+...+.|++..+|.++..++..+....+. +.++|.+...+.++++.||..++..++.+...++
T Consensus 90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 753 3377999999999999999999999999999987763 4688889999999999999999999999987765
Q ss_pred hh----HHhhhhhhhhhhhhhhhcccccchhhhhhhhhH--HHHHHHhhhhhhh
Q 008806 469 PE----WAMQHITPQKSHVLDCCQWSLMHQKTEYLTSSL--MWQKCYSLSFPLL 516 (553)
Q Consensus 469 ~~----~~~~~i~p~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~ 516 (553)
++ ...+.++|.+...+.|.++.++.....++..-. +..+.+..+.+.+
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 32 345799999999999999998888777655522 3223344444444
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.66 E-value=4.5e-15 Score=132.94 Aligned_cols=189 Identities=19% Similarity=0.185 Sum_probs=146.3
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 319 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (553)
+..++.+.+.++|+++.+|..++..|+.+. .+..+|.+.+++.|+++.+|..++.+|+.+.. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 346777777888889999998888888763 24578888888999999999999988887532 34
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHH
Q 008806 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (553)
Q Consensus 320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll 399 (553)
.++.+...+.|+++.||..++.+++.+.. ...+|.+..+++|+++.||..++.+|+.+.. ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence 55777778888999999999998888763 2356788888899999999999999988753 3457
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 400 ~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
+.|..+++|+++.+|..++.+++.+. .+..++.+..+++|+++.||..|.++|+.+....+
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIG--------GERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC--------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 77888888999999999999998874 14567778888889999999999999988876654
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.65 E-value=7.2e-15 Score=130.47 Aligned_cols=185 Identities=19% Similarity=0.204 Sum_probs=136.8
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 319 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 319 (553)
....+.+.+.++|+++.+|..++..|+.+. ....++.+.++++|+++.+|..++.+|+.+.. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 445667777788888888888888887653 13567778888888888888888888776532 23
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHH
Q 008806 320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (553)
Q Consensus 320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll 399 (553)
.++.+...+.|+++.+|..++.+++.+.. ....+.+...++|+++.||..++.+++.+.. ...+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 45666677788888888888888877653 2356777778888888888888888887753 3456
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 008806 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 464 (553)
Q Consensus 400 ~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~ 464 (553)
+.|..++.|+++.+|..++.+++.+. .+..++.+..++.|+++.||..|.++|+.+-
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIG--------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC--------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 77777888888888888888888773 2346677777788888888888888887654
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.65 E-value=1.2e-14 Score=130.09 Aligned_cols=186 Identities=21% Similarity=0.213 Sum_probs=125.3
Q ss_pred hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 008806 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 281 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 281 (553)
..++.+.+.++|+++.+|..++..++.+.. ...+|.+.+.+.|.++.+|..++.+|+.+. .+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~ 82 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DERA 82 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHH
Confidence 445556666777777777777777776653 235666667777777777777777777653 2346
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHH
Q 008806 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 361 (553)
Q Consensus 282 lp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p 361 (553)
++.+.++++|+++.||..++.+|+.+.. +..+|.+..++.|+++.||..++.+++.+.. ...+|
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 146 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 146 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence 6777777777777777777777776532 2345666667777777787777777777642 23466
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhh
Q 008806 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (553)
Q Consensus 362 ~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~ 427 (553)
.+..+++|+++.||..++.+|+.+.. +..++.|..+++|+++.+|..+..+++.+...
T Consensus 147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 67777777777788877777777643 44566677777777777888777777766543
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.64 E-value=2e-14 Score=127.54 Aligned_cols=183 Identities=21% Similarity=0.218 Sum_probs=100.4
Q ss_pred hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 008806 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 281 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 281 (553)
...+.+.+.++|+++.+|..|+..++.+.. ...++.+.+.++|+++.+|..++..|+.+. .+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------~~~~ 77 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DERA 77 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGG
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHH
Confidence 344445555566666666666666555442 123455555555666666666666655542 1234
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHH
Q 008806 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 361 (553)
Q Consensus 282 lp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p 361 (553)
++.+.+++.|+++.||..|+.+|+.+.. +..++.+...+.|+++.||..++.+++.+.. ...++
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 141 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 141 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 5556666666666666666666655321 1234445555566666666666666655542 22355
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHH
Q 008806 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (553)
Q Consensus 362 ~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i 424 (553)
.+..+++|+++.||..++.+|+.+.. +..++.|..++.|+++.+|..+..+++.+
T Consensus 142 ~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 142 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 55566666666666666666665532 33455555555666666666666665543
No 47
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.59 E-value=1.8e-11 Score=135.28 Aligned_cols=440 Identities=14% Similarity=0.090 Sum_probs=277.5
Q ss_pred ccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCC-----CcHHHHHHHHHHhhccccccC-C-------------
Q 008806 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-----DDDEVLLAMAEELGVFIPYVG-G------------- 80 (553)
Q Consensus 21 ~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d-----~~~~vr~~~~~~l~~l~~~~~-~------------- 80 (553)
.++.+|.+.+..++.++++..|+. |+++++.+.+ +.. +++..+..+...|..+.+... .
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~ 193 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTS 193 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CC
T ss_pred CCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHH
Confidence 468899999999999998877755 8888888887 443 255566666666665553110 0
Q ss_pred -cchhhcchhHHHhhhccch--hHHHHHHHHHHHHHHhhcChhh-hhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCC
Q 008806 81 -VEHAHVLLPPLETLCTVEE--TCVRDKAVESLCRIGSQMRESD-LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA 156 (553)
Q Consensus 81 -~~~~~~l~~~l~~l~~~~~--~~vR~~a~~~l~~l~~~~~~~~-~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 156 (553)
......+++++.....+.+ ..++..+++++...+. ++... ....+++.+.+... ++..|..+++++..+....
T Consensus 194 l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~ 270 (963)
T 2x19_B 194 LAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQP 270 (963)
T ss_dssp SGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHccc
Confidence 1223445666666554332 2478888888877766 33211 12456777777664 5778999999999888754
Q ss_pred C-h---HHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHHhhhCc--------hhhhhhHHHHHHHhhhC----
Q 008806 157 P-D---ILKTELRSIYTQL-------CQDDMPMVRRSAASNLGKFAATVEP--------AHLKTDIMSIFEDLTQD---- 213 (553)
Q Consensus 157 ~-~---~~~~~l~~~l~~l-------l~d~~~~Vr~~a~~~l~~l~~~~~~--------~~~~~~l~p~l~~~~~d---- 213 (553)
. + .....+++.+..+ ..+.+.+..+..++.+..++..... ......+++.+.....+
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 350 (963)
T 2x19_B 271 DAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHY 350 (963)
T ss_dssp TGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCT
T ss_pred ccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCC
Confidence 3 2 2333344433322 2344556666777777776653221 12223455556655554
Q ss_pred -CChhHHHHHHHHHHHhhccC-C--c---c-------hhhhchHHHHHHhcCCC--------------CH-HHHHHHHHH
Q 008806 214 -DQDSVRLLAVEGCAALGKLL-E--P---Q-------DCVAHILPVIVNFSQDK--------------SW-RVRYMVANQ 264 (553)
Q Consensus 214 -~~~~vr~~a~~~l~~l~~~~-~--~---~-------~~~~~ll~~l~~l~~d~--------------~~-~vR~~~~~~ 264 (553)
.++.++..++..+..+++.. . . . .....+++.+...+..+ ++ ..|..+...
T Consensus 351 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~ 430 (963)
T 2x19_B 351 PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDT 430 (963)
T ss_dssp TTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHH
Confidence 46677888888887777622 1 0 0 11122333333322111 11 236777788
Q ss_pred HHHHHHHhCCCccccchHHHHHHhc----CCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhHHHHHHHhccCCcHHHHHH
Q 008806 265 LYELCEAVGPEPTRMDLVPAYVRLL----RDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSA 338 (553)
Q Consensus 265 l~~l~~~~~~~~~~~~llp~l~~ll----~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~ 338 (553)
+..++...+.+. .+.+.+.+.+.+ .+.++..+.+++.+++.+++.+..+ .+...+++.+..+. ++++.+|..
T Consensus 431 L~~~~~~~~~~~-l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~-~~~~~vr~~ 508 (963)
T 2x19_B 431 LMYVYEMLGAEL-LSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRIS-ISNVQLADT 508 (963)
T ss_dssp HHHHHHHHTHHH-HHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSC-CCSHHHHHH
T ss_pred HHHHHHHccHHH-HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCC-CCcHHHHHH
Confidence 888887766332 244556666666 6678999999999999998876432 33455666554443 357889999
Q ss_pred HHHHHHhhhhhhCHH-hHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcC--CCcHH
Q 008806 339 LASVIMGMAPLLGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED--RHWRV 413 (553)
Q Consensus 339 ~~~~l~~l~~~~~~~-~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d--~~~~v 413 (553)
++.+++.+++.++.. ...+.+++.+...+++ +.|+..|+.++..+++..+... +.+.++..+..++.. -+...
T Consensus 509 ~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~ 586 (963)
T 2x19_B 509 VMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQ 586 (963)
T ss_dssp HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHH
Confidence 999999999877642 3467788888888876 8899999999999998665432 225666667666664 35689
Q ss_pred HHHHHHHHHHHHhhhChhh---hHHHHHHHHHHHc----cC-CchHHHH---HHHHHHHHHHHHhC
Q 008806 414 RLAIIEYIPLLASQLGVGF---FDDKLGALCMQWL----QD-KVYSIRD---AAANNLKRLAEEFG 468 (553)
Q Consensus 414 R~~~~~~l~~i~~~~~~~~---~~~~l~~~l~~~l----~D-~~~~VR~---~a~~~l~~l~~~~~ 468 (553)
|..++++++.++...+.+. +...+++.+...+ +. .+.+.+. ..+++++.+.+.++
T Consensus 587 ~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 587 CMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999998776332 3334454444332 22 2344443 56777888888776
No 48
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.58 E-value=4.5e-12 Score=140.09 Aligned_cols=450 Identities=11% Similarity=0.048 Sum_probs=277.0
Q ss_pred HHHHHHhc-CccHHHHHHHhhhHHHHHHh----hChH---HHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcch
Q 008806 12 AVLIDELK-NDDIQLRLNSIRRLSTIARA----LGEE---RTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (553)
Q Consensus 12 ~~ll~~L~-~~d~~~R~~a~~~l~~i~~~----~~~~---~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 83 (553)
..+...|. +.+..+|..|+..|....+. ++++ ..++.+++.+.....+.+.+|..++.++..++..... .
T Consensus 42 ~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~ 119 (971)
T 2x1g_F 42 QFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--E 119 (971)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--c
Confidence 34444554 56788999999998866432 2222 2355666666553334578999999999999886444 5
Q ss_pred hhcchhHHHhhhccc------hhHHHHHHHHHHHHHHhhcCh-----------hhh---hhhHHHHHHHHhcCC-C----
Q 008806 84 AHVLLPPLETLCTVE------ETCVRDKAVESLCRIGSQMRE-----------SDL---VDWYIPLVKRLAAGE-W---- 138 (553)
Q Consensus 84 ~~~l~~~l~~l~~~~------~~~vR~~a~~~l~~l~~~~~~-----------~~~---~~~~l~~l~~~~~~~-~---- 138 (553)
|..+++.+....+.+ ++..+..++..|..+.+.+.. +.+ .+.+++++.+...+. +
T Consensus 120 Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~ 199 (971)
T 2x1g_F 120 WPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWD 199 (971)
T ss_dssp ------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 666776666555443 566788888888887753210 111 234556565544321 1
Q ss_pred ---cchhhhHhhhhHhhcC--CCChHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHHHhhhCch
Q 008806 139 ---FTARVSACGLFHIAYP--SAPDILKTELRSIYTQLC----------------QDDMPMVRRSAASNLGKFAATVEPA 197 (553)
Q Consensus 139 ---~~~r~~~~~~l~~l~~--~~~~~~~~~l~~~l~~ll----------------~d~~~~Vr~~a~~~l~~l~~~~~~~ 197 (553)
+.++..+..+++.... ..+......+++.+.+ + .++++.+|..+++++..+...-..+
T Consensus 200 ~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~ 278 (971)
T 2x1g_F 200 AEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCH 278 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred ccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccc
Confidence 2678888888876544 3333344566776665 3 1256789999999999998742211
Q ss_pred ---hhhhhHHHHHHH-------hhhCCC---hhHHHHHHHHHHHhhccCCc-------------chhhhchHHHHHHhcC
Q 008806 198 ---HLKTDIMSIFED-------LTQDDQ---DSVRLLAVEGCAALGKLLEP-------------QDCVAHILPVIVNFSQ 251 (553)
Q Consensus 198 ---~~~~~l~p~l~~-------~~~d~~---~~vr~~a~~~l~~l~~~~~~-------------~~~~~~ll~~l~~l~~ 251 (553)
.....++|.+.. ...+++ .+.....++.+..+++.... ......+++.+.....
T Consensus 279 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~ 358 (971)
T 2x1g_F 279 NYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTD 358 (971)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHc
Confidence 122334444332 123444 26666667777766643111 0112234555554432
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHh-C-----C-Ccc-------ccchHHHHHHhcC---CC-----c-------HHHH
Q 008806 252 -----DKSWRVRYMVANQLYELCEAV-G-----P-EPT-------RMDLVPAYVRLLR---DN-----E-------AEVR 297 (553)
Q Consensus 252 -----d~~~~vR~~~~~~l~~l~~~~-~-----~-~~~-------~~~llp~l~~ll~---d~-----~-------~~vr 297 (553)
..+..++..++..+..++... . . ... ...+++.+...+. |. + .+.|
T Consensus 359 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 359 KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence 245678888888888877632 1 1 111 1134444444432 11 1 2467
Q ss_pred HHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccC-----CcHHHHHHHHHHHHhhhhhhCHHh--HHHhHHHHHHHhh-CC
Q 008806 298 IAAAGKVTKFCRILNPELAIQHILPCVKELSSD-----SSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLL-KD 369 (553)
Q Consensus 298 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d-----~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l-~d 369 (553)
.++...+..++..++ +...+.+++.+...+.. .+|+.|++++.+++.+++.+.... ..+.+++.+..+. .|
T Consensus 439 ~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d 517 (971)
T 2x1g_F 439 QDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEK 517 (971)
T ss_dssp HHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccc
Confidence 888888888887777 44556777777665543 789999999999999998776532 2445566444443 25
Q ss_pred CChHHHHHHHHHHHHhhhhhchh-hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHcc
Q 008806 370 EFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQ 446 (553)
Q Consensus 370 ~~~~VR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~ 446 (553)
.++.||..++.+++.+...++.+ .+...++|.+...+ + ++++..++.++..+.+.++.. .+.+.++..+..++.
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 68999999999999999988743 23367778777777 3 789999999999999876544 344456666666666
Q ss_pred C--CchHHHHHHHHHHHHHHHHhC
Q 008806 447 D--KVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 447 D--~~~~VR~~a~~~l~~l~~~~~ 468 (553)
. ....++..+.++++.++...+
T Consensus 595 ~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 595 TGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp STTSCHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCChHHHHHHHHHHHHHHHhCC
Confidence 5 357899999999999998776
No 49
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.58 E-value=3.9e-12 Score=140.63 Aligned_cols=402 Identities=11% Similarity=0.006 Sum_probs=250.6
Q ss_pred ccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-cCCC------cHHHHHHHHHHhhcccccc---CC----------
Q 008806 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD------DDEVLLAMAEELGVFIPYV---GG---------- 80 (553)
Q Consensus 21 ~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~~d~------~~~vr~~~~~~l~~l~~~~---~~---------- 80 (553)
.+..+|.+.+..++.++++..| .|+++++.+.+ +..+ ++..+..+...|..+.+.+ ..
T Consensus 97 ~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~ 174 (971)
T 2x1g_F 97 GPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAE 174 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHH
Confidence 3688999999999999998877 68888888877 4332 5666777777776555311 00
Q ss_pred -cchhhcchhHHHhhhccc-h-------hHHHHHHHHHHHHHHh--hcChhhhhhhHHHHHHHHh---------------
Q 008806 81 -VEHAHVLLPPLETLCTVE-E-------TCVRDKAVESLCRIGS--QMRESDLVDWYIPLVKRLA--------------- 134 (553)
Q Consensus 81 -~~~~~~l~~~l~~l~~~~-~-------~~vR~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~~~--------------- 134 (553)
......+++++.....+. + ..++..+++++..++. .++.. ....+++.+.. +
T Consensus 175 l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~ 252 (971)
T 2x1g_F 175 IAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGC 252 (971)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CC
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccc
Confidence 012234555555444321 1 2789999999998887 35554 55567776665 3
Q ss_pred -cCCCcchhhhHhhhhHhhcCCCCh----HHHHHHHHHHHH-------hcCCCCH---HHHHHHHHHHHHHHhhhCc---
Q 008806 135 -AGEWFTARVSACGLFHIAYPSAPD----ILKTELRSIYTQ-------LCQDDMP---MVRRSAASNLGKFAATVEP--- 196 (553)
Q Consensus 135 -~~~~~~~r~~~~~~l~~l~~~~~~----~~~~~l~~~l~~-------ll~d~~~---~Vr~~a~~~l~~l~~~~~~--- 196 (553)
.++++..|..+++++..+...... .....+++.+.. ...+.+. .+....++.+..+++....
T Consensus 253 ~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~ 332 (971)
T 2x1g_F 253 MTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLL 332 (971)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 124567899999999988865331 133344444333 1244443 6777778877777643211
Q ss_pred ----------hhhhhhHHHHHHHhhhC-----CChhHHHHHHHHHHHhhcc-CC------cc-------hhhhchHHHHH
Q 008806 197 ----------AHLKTDIMSIFEDLTQD-----DQDSVRLLAVEGCAALGKL-LE------PQ-------DCVAHILPVIV 247 (553)
Q Consensus 197 ----------~~~~~~l~p~l~~~~~d-----~~~~vr~~a~~~l~~l~~~-~~------~~-------~~~~~ll~~l~ 247 (553)
......+++.+...... .++.++..++..+..+++. .+ .. .....+++.+.
T Consensus 333 ~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 333 SGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 11223445555554433 5788999999998888762 11 11 11222344333
Q ss_pred HhcC---CC-----C-------HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-----CcHHHHHHHHHHHHHH
Q 008806 248 NFSQ---DK-----S-------WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-----NEAEVRIAAAGKVTKF 307 (553)
Q Consensus 248 ~l~~---d~-----~-------~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d-----~~~~vr~~a~~~l~~~ 307 (553)
..+. |. + ...|..+...+..++..+++ ...+.+++.+.+.+.. .++..|.+++.+++.+
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~i 491 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND-YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSV 491 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHT
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 3221 11 1 14677788888887766652 2234455555555543 6788999999999998
Q ss_pred HHhhCHH--HHHHhHHHHHHHhc-cCCcHHHHHHHHHHHHhhhhhhCHH-hHHHhHHHHHHHhhCCCChHHHHHHHHHHH
Q 008806 308 CRILNPE--LAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (553)
Q Consensus 308 ~~~~~~~--~~~~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~ 383 (553)
++....+ ...+.+++.+..+. .|+++.||..++.+++.++..++.. .....++|.+...+ | +.|+..|+.++.
T Consensus 492 ae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~ 568 (971)
T 2x1g_F 492 AEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLK 568 (971)
T ss_dssp TTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHH
T ss_pred HhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHH
Confidence 8766532 23455566444444 2568999999999999999988743 23567788888888 4 789999999999
Q ss_pred Hhhhhhchhh--HHhhHHHHHHHhhcC--CCcHHHHHHHHHHHHHHhhhCh
Q 008806 384 QVNQVIGIDL--LSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV 430 (553)
Q Consensus 384 ~~~~~~~~~~--~~~~ll~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~~ 430 (553)
.+++..+... +.+.++..+..++.. .+...+..++++++.++...+.
T Consensus 569 ~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~ 619 (971)
T 2x1g_F 569 ELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRP 619 (971)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCH
Confidence 9998765432 225666666677666 3578999999999999987663
No 50
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.56 E-value=3.4e-11 Score=133.09 Aligned_cols=415 Identities=10% Similarity=0.049 Sum_probs=250.7
Q ss_pred hhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhcc-----chhHHHHHHHHHHHHHHhhcC-h
Q 008806 46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-----EETCVRDKAVESLCRIGSQMR-E 119 (553)
Q Consensus 46 ~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~-----~~~~vR~~a~~~l~~l~~~~~-~ 119 (553)
+..+++.+.+..+.++.+|..++.++..++..... ..|..+++.+....+. +++..+..++..|..+.+.+. .
T Consensus 102 r~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~ 180 (963)
T 2x19_B 102 KAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTS 180 (963)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcc
Confidence 34444544442234578899999998888775333 2366666666655543 244567788888887775321 1
Q ss_pred --------------hhhhhhHHHHHHHHhcCCCc--chhhhHhhhhHhhcCCCChH--HHHHHHHHHHHhcCCCCHHHHH
Q 008806 120 --------------SDLVDWYIPLVKRLAAGEWF--TARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRR 181 (553)
Q Consensus 120 --------------~~~~~~~l~~l~~~~~~~~~--~~r~~~~~~l~~l~~~~~~~--~~~~l~~~l~~ll~d~~~~Vr~ 181 (553)
....+.+++++.+...+.+. .++..+.+++..... .+.. ....+++.+.+.+. ++.+|.
T Consensus 181 ~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~ 257 (963)
T 2x19_B 181 RLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFD 257 (963)
T ss_dssp CC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHH
Confidence 01123466667666655432 256666666654433 2222 23667777777774 577889
Q ss_pred HHHHHHHHHHhhhCch---hhhhhHHHHHHH-------hhhCCChhHHHHHHHHHHHhhccCCc--------chhhhchH
Q 008806 182 SAASNLGKFAATVEPA---HLKTDIMSIFED-------LTQDDQDSVRLLAVEGCAALGKLLEP--------QDCVAHIL 243 (553)
Q Consensus 182 ~a~~~l~~l~~~~~~~---~~~~~l~p~l~~-------~~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~ll 243 (553)
.+++++..+.....+. .....+++.+.. ...+++.+.....++.+..+++.... ......++
T Consensus 258 ~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l 337 (963)
T 2x19_B 258 SSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALV 337 (963)
T ss_dssp HHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHH
Confidence 9999999888643321 122233333222 12333434444455666555532111 11122344
Q ss_pred HHHHHhcCC-----CCHHHHHHHHHHHHHHHHHhCCC-------------ccccchHHHHHHhcCCC----------c--
Q 008806 244 PVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPE-------------PTRMDLVPAYVRLLRDN----------E-- 293 (553)
Q Consensus 244 ~~l~~l~~d-----~~~~vR~~~~~~l~~l~~~~~~~-------------~~~~~llp~l~~ll~d~----------~-- 293 (553)
..+.....+ .++.++..+...+..++...... .....+++.++..+.-+ +
T Consensus 338 ~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~ 417 (963)
T 2x19_B 338 NMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEK 417 (963)
T ss_dssp HHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHH
T ss_pred HHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHH
Confidence 555544443 34445555555555555422110 00112444444433211 1
Q ss_pred ---HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhc----cCCcHHHHHHHHHHHHhhhhhhCHH--hHHHhHHHHHH
Q 008806 294 ---AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS----SDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFL 364 (553)
Q Consensus 294 ---~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~----~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~p~l~ 364 (553)
.+.|.++...+..++...+.+ ..+.+.+.+...+ .+.+|+.|++++.+++.+++.+... .....+++.+.
T Consensus 418 ~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~ 496 (963)
T 2x19_B 418 EQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP 496 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Confidence 134677778888877777743 4566677776666 6789999999999999999876542 22344555443
Q ss_pred HhhCCCChHHHHHHHHHHHHhhhhhchh-hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHH
Q 008806 365 SLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALC 441 (553)
Q Consensus 365 ~~l~d~~~~VR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l 441 (553)
. +.++++.||..++.+++.+...++.+ .+.+.+++.+...+.+ ..+|..++.++..++..++.. .+.+.++..+
T Consensus 497 ~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l 573 (963)
T 2x19_B 497 R-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVS 573 (963)
T ss_dssp G-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHH
T ss_pred h-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3 34467889999999999999877643 2347788888877765 789999999999999876654 3456677777
Q ss_pred HHHccC--CchHHHHHHHHHHHHHHHHhC
Q 008806 442 MQWLQD--KVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 442 ~~~l~D--~~~~VR~~a~~~l~~l~~~~~ 468 (553)
..++.. -....|..+.++++.++...+
T Consensus 574 ~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 574 QDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 676664 357899999999999998776
No 51
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.8e-13 Score=122.48 Aligned_cols=198 Identities=11% Similarity=0.192 Sum_probs=160.0
Q ss_pred hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHH-hhccCCc----chhhhchHHHHHHhc-CCCCHHHHHHHHHHHHHHHH
Q 008806 197 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA-LGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCE 270 (553)
Q Consensus 197 ~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~-l~~~~~~----~~~~~~ll~~l~~l~-~d~~~~vR~~~~~~l~~l~~ 270 (553)
.++.+.+-+-+.+.+.+.+|.-|.+|+..+.. +++..+. ..-...++..+.+.+ +|.+..||..++.+++.++.
T Consensus 11 ~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~ 90 (249)
T 2qk1_A 11 ETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD 90 (249)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 34444554556667889999999999999999 8754322 111245788888888 89999999999999999999
Q ss_pred HhC-CCcc-c--cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH---HHHhHHHHHHHhccCCcHHHHHHHHHHH
Q 008806 271 AVG-PEPT-R--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVI 343 (553)
Q Consensus 271 ~~~-~~~~-~--~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~~~~~l 343 (553)
.++ ..+. . ..++|.++..++|..+.||.++..++..+++..++.. ..+.+++.+...+++++|.+|..++..+
T Consensus 91 ~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l 170 (249)
T 2qk1_A 91 KLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLF 170 (249)
T ss_dssp HHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 998 6653 2 3589999999999999999999999999999874321 1356778888888999999999999999
Q ss_pred HhhhhhhCH---H--hHH-HhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH
Q 008806 344 MGMAPLLGK---D--ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (553)
Q Consensus 344 ~~l~~~~~~---~--~~~-~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~ 394 (553)
..++...+. . ... +.++|.+.+++.|.+++||.+|..+++.++..+|.+.+
T Consensus 171 ~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 171 NASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp HHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 999987763 2 235 78999999999999999999999999999999997544
No 52
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.55 E-value=4.2e-11 Score=133.03 Aligned_cols=453 Identities=9% Similarity=0.055 Sum_probs=273.6
Q ss_pred CcCcHHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccc----cCCcc
Q 008806 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE 82 (553)
Q Consensus 7 ~~~~i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~----~~~~~ 82 (553)
.+..+..++..+.+++...|..|-+.|..+-+ .| +.+..+...+.. +.++++|..++..|.+.+.. ++.+.
T Consensus 14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~--~p-~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQD--NP-DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--ST-TGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh--Cc-hHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 34567788888888888899999999987743 22 345555555544 45788999999999876642 12111
Q ss_pred ---hhhcchhHHHhhhccc-----hhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcC
Q 008806 83 ---HAHVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (553)
Q Consensus 83 ---~~~~l~~~l~~l~~~~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~ 154 (553)
....++..+.....++ +..+|...+.++..++..--+ ..++.+++.+.+..+ .+...+..+..++..+.+
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~e 166 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSE 166 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHH
Confidence 1223333333322222 367899999999998876433 346677777777765 333445555555544432
Q ss_pred C---C-----Ch-------H----HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhCchh-hhhhHHHHHH-Hhhh
Q 008806 155 S---A-----PD-------I----LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFE-DLTQ 212 (553)
Q Consensus 155 ~---~-----~~-------~----~~~~l~~~l~~ll~d-~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~l~p~l~-~~~~ 212 (553)
- . +. + ....+++.+.+++++ .+..++..++++++.+....+... ....+++.+. .++.
T Consensus 167 ev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 167 EVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp HHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH
T ss_pred HHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC
Confidence 1 1 11 1 123445555555543 356788888888877666554322 1123333333 1121
Q ss_pred CCChhHHHHHHHHHHHhhcc-CCcc-------------------------------------------------------
Q 008806 213 DDQDSVRLLAVEGCAALGKL-LEPQ------------------------------------------------------- 236 (553)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~-~~~~------------------------------------------------------- 236 (553)
++.+|..|++++..+... .++.
T Consensus 247 --~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~ 324 (1049)
T 3m1i_C 247 --SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1049)
T ss_dssp --SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred --CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 344555555554444322 1110
Q ss_pred ---------------hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--CCCc---c---ccchHHHHHHhcC---
Q 008806 237 ---------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEP---T---RMDLVPAYVRLLR--- 290 (553)
Q Consensus 237 ---------------~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~--~~~~---~---~~~llp~l~~ll~--- 290 (553)
.....+++.+......++..++..+.+.+..++..+ .... . ...+++.++..+.
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e 404 (1049)
T 3m1i_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE 404 (1049)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 001112333333334445566666666666655532 1111 1 1134455544431
Q ss_pred -------CC---------c---HHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhcc--CCcHHHHHHHHHHHHhhhhh
Q 008806 291 -------DN---------E---AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 291 -------d~---------~---~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~--d~~~~vr~~~~~~l~~l~~~ 349 (553)
|+ + ...|.++...|..++. .+++...+.+.+.+...+. ..+|+.|++++.+++.++..
T Consensus 405 d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~ 483 (1049)
T 3m1i_C 405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1049)
T ss_dssp TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS
T ss_pred ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 00 1 1456677777777764 4455566777788877765 46899999999999999887
Q ss_pred hCHH---hHHHhHHHHHHHhhC-----CCChHHHHHHHHHHHHhhhhhchh-hHHhhHHHHHHHhhcCCCcHHHHHHHHH
Q 008806 350 LGKD---ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAIIEY 420 (553)
Q Consensus 350 ~~~~---~~~~~l~p~l~~~l~-----d~~~~VR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~~~~d~~~~vR~~~~~~ 420 (553)
++.. .+...+++.+..+.. |+.+.||..++.+++.+...+..+ .+...+++.+...+.+++.++|..|+.+
T Consensus 484 ~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~a 563 (1049)
T 3m1i_C 484 MSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDT 563 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6654 224556666655432 345667777889999988766443 2336778888888889999999999999
Q ss_pred HHHHHhhhChh----------hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh
Q 008806 421 IPLLASQLGVG----------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 421 l~~i~~~~~~~----------~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
+..++..++.. .+.+.++..+..++.+....-+....++++.++...++
T Consensus 564 l~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 99999887654 34566666666777776666677889999999988873
No 53
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.4e-13 Score=122.11 Aligned_cols=188 Identities=13% Similarity=0.114 Sum_probs=150.4
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHH-HHHhh---C--HHHHHHhHHHHHHHhc-cCCcHHHHHHHHHHHHhhhhhhC-HH
Q 008806 282 VPAYVRLLRDNEAEVRIAAAGKVTK-FCRIL---N--PELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLG-KD 353 (553)
Q Consensus 282 lp~l~~ll~d~~~~vr~~a~~~l~~-~~~~~---~--~~~~~~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~-~~ 353 (553)
-+-+.+.+.+.+|.-|.+|+..|.. +++.. . ...+ ..++..+.+.+ .|++..||..++.+++.++..++ +.
T Consensus 18 ~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 18 PKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred ChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 3345556677788888888888877 66431 1 1111 35566777777 79999999999999999998887 44
Q ss_pred h---HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH---HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhh
Q 008806 354 A---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (553)
Q Consensus 354 ~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~---~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~ 427 (553)
+ +...++|.++..++|..+.||.++..++..++...++... .+.+++.+...+++++|.+|..++.+++.++..
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2 3567899999999999999999999999999998743211 257889999999999999999999999999988
Q ss_pred hCh--h---hhH-HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh
Q 008806 428 LGV--G---FFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 428 ~~~--~---~~~-~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
.+. . .+. +.++|.+..++.|+..+||.+|.++++.++..+|.+
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 764 2 244 678999999999999999999999999999999965
No 54
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.49 E-value=4.1e-12 Score=116.94 Aligned_cols=226 Identities=13% Similarity=0.102 Sum_probs=169.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--H-HH
Q 008806 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LA 316 (553)
Q Consensus 243 l~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~-~~ 316 (553)
+|.+.+++.+.++.+|..++.+|..++...+ ........+|.+.++++++++.+|..++.+|..++..-.. + -.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4555666666667777777777777664311 0011235789999999999999999999999988753111 1 12
Q ss_pred HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH---HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch--
Q 008806 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-- 391 (553)
Q Consensus 317 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~-- 391 (553)
....+|.+..++.++++.+|..++.++..++..... .......+|.+.++++++++.+|..++.+|+.++..-..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 235788899999999999999999999999853221 112345789999999999999999999999999764221
Q ss_pred -hhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh---hhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 392 -DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 392 -~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
.......+|.|..++.++++.+|..++.+++.++..-.. .......++.+..++.+++..+|..|+.+++.+....
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 123356889999999999999999999999999853111 1122346889999999999999999999999999865
Q ss_pred C
Q 008806 468 G 468 (553)
Q Consensus 468 ~ 468 (553)
+
T Consensus 244 ~ 244 (252)
T 4hxt_A 244 W 244 (252)
T ss_dssp B
T ss_pred C
Confidence 4
No 55
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.49 E-value=9.3e-11 Score=130.27 Aligned_cols=446 Identities=11% Similarity=0.029 Sum_probs=275.7
Q ss_pred HHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCC---c---------------chh
Q 008806 23 IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG---V---------------EHA 84 (553)
Q Consensus 23 ~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~---~---------------~~~ 84 (553)
..+|.+.+..++.++++..| ..|+++++.+.+....++..+..+...|..+.+.+.. + ...
T Consensus 114 ~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~ 192 (1049)
T 3m1i_C 114 KNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF 192 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 67899999999999988777 4589999988883235555555555666555432211 0 112
Q ss_pred hcchhHHHhhhc-cchhHHHHHHHHHHHHHHhhcChhh-hhhhHHHHHH-HHhcCCCcchhhhHhhhhHhhcCC-CChH-
Q 008806 85 HVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESD-LVDWYIPLVK-RLAAGEWFTARVSACGLFHIAYPS-APDI- 159 (553)
Q Consensus 85 ~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~-~~~~~l~~l~-~~~~~~~~~~r~~~~~~l~~l~~~-~~~~- 159 (553)
..+++++...+. .++..++..+++++..+....+... ....+++.+. .+.. ++.+|..+++++..++.. .++.
T Consensus 193 ~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~ 270 (1049)
T 3m1i_C 193 EQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN 270 (1049)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcch
Confidence 234444444433 3456789999999988877666433 3345666665 3333 567899999998887754 2221
Q ss_pred --HHH-------HHHHHHHH--------------hcCCCCHHHHHHHHHHHHHHHhhhCc--------hhhhhhHHHHHH
Q 008806 160 --LKT-------ELRSIYTQ--------------LCQDDMPMVRRSAASNLGKFAATVEP--------AHLKTDIMSIFE 208 (553)
Q Consensus 160 --~~~-------~l~~~l~~--------------ll~d~~~~Vr~~a~~~l~~l~~~~~~--------~~~~~~l~p~l~ 208 (553)
+.. .++..+.. ...|.+..+.+..++.+..++..... ......+++.+.
T Consensus 271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll 350 (1049)
T 3m1i_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Confidence 111 12222211 12345666677777777665543211 112345667777
Q ss_pred HhhhCCChhHHHHHHHHHHHhhccC----C-cc---hhhhchHHHHHHhc---CCC-------------------CHHHH
Q 008806 209 DLTQDDQDSVRLLAVEGCAALGKLL----E-PQ---DCVAHILPVIVNFS---QDK-------------------SWRVR 258 (553)
Q Consensus 209 ~~~~d~~~~vr~~a~~~l~~l~~~~----~-~~---~~~~~ll~~l~~l~---~d~-------------------~~~vR 258 (553)
....+++.+++..+++.+..+++.+ . .. .....+++.+...+ +|. +|..|
T Consensus 351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~ 430 (1049)
T 3m1i_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY 430 (1049)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHH
Confidence 7777888899999999998887732 1 11 12233444443322 111 13457
Q ss_pred HHHHHHHHHHHHHhCCCccccchHHHHHHhcC--CCcHHHHHHHHHHHHHHHHhhCHH---HHHHhHHHHHHHhcc----
Q 008806 259 YMVANQLYELCEAVGPEPTRMDLVPAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSS---- 329 (553)
Q Consensus 259 ~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~--d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~l~~---- 329 (553)
.++...|..++...+. ...+.+.+.+.+.+. ..++..+.+++.+++.++..++.. .+...+++.+..+..
T Consensus 431 ~~~~~~L~~l~~~~~~-~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~ 509 (1049)
T 3m1i_C 431 KSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRG 509 (1049)
T ss_dssp HHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHccCHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcc
Confidence 7777888888754332 222345556666664 367899999999999887765543 334566666655443
Q ss_pred -CCcHHHHHHHHHHHHhhhhhhCHH-hHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh----------HHhh
Q 008806 330 -DSSQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------LSQS 397 (553)
Q Consensus 330 -d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~----------~~~~ 397 (553)
|+.+.+|..++..++.++..+... .....+++.+...+.|+++.|+..|+.++..+++..+... +.+.
T Consensus 510 ~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~ 589 (1049)
T 3m1i_C 510 KDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHH
Confidence 345667777999999998776542 3456678888888999999999999999999998766432 1356
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh-hh---hHHHHHHHHHHH----c----cC---C-ch-HHH--HHHHH
Q 008806 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GF---FDDKLGALCMQW----L----QD---K-VY-SIR--DAAAN 458 (553)
Q Consensus 398 ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~-~~---~~~~l~~~l~~~----l----~D---~-~~-~VR--~~a~~ 458 (553)
++..+..+..+.+..-+..+.++++.++...+. +. +...+++.+... + .+ . +. .++ ...++
T Consensus 590 il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~ 669 (1049)
T 3m1i_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIK 669 (1049)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHH
Confidence 666666677766666778889999999988773 22 233344433221 1 10 1 11 122 23466
Q ss_pred HHHHHHHHhChhHH
Q 008806 459 NLKRLAEEFGPEWA 472 (553)
Q Consensus 459 ~l~~l~~~~~~~~~ 472 (553)
++..++..+|+.+.
T Consensus 670 ~~~~~~~~l~~~f~ 683 (1049)
T 3m1i_C 670 TNVAVCTSMGADFY 683 (1049)
T ss_dssp HHHHHHHHHGGGGH
T ss_pred HHHHHHHHhhHHHH
Confidence 77788888886654
No 56
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.49 E-value=3.8e-12 Score=117.17 Aligned_cols=231 Identities=13% Similarity=0.089 Sum_probs=145.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch---hhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhc
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 241 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (553)
++.+.++++++++.+|..++.+|+.++..-+.. .....++|.+.+++++++..+|..++.++..++..-+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------- 76 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD------- 76 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-------
Confidence 455566666666666666666666655433210 0112344555555555555555555555554442100
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHH
Q 008806 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQ 318 (553)
Q Consensus 242 ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~ 318 (553)
..+.. ......+|.+.++++++++.+|..|+.+|..++..... .-...
T Consensus 77 --------------~~~~~---------------~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 77 --------------EAIKA---------------IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp --------------HHHHH---------------HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred --------------HHHHH---------------HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 00000 01124677788888888888888888888877642111 11123
Q ss_pred hHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH---HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch---h
Q 008806 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D 392 (553)
Q Consensus 319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~ 392 (553)
..+|.+.+++.++++.+|..++.+++.++...+. .......+|.+..++.++++.+|..++.+|..++..-.. .
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 207 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA 207 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4678888888888888999999998888764221 112345788889999988899999999999988762111 1
Q ss_pred hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh
Q 008806 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (553)
Q Consensus 393 ~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~ 431 (553)
.....+++.+.+++.+++..+|..++.+++.+....+..
T Consensus 208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 123567888999999999999999999999998765443
No 57
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.46 E-value=1.3e-12 Score=120.51 Aligned_cols=223 Identities=13% Similarity=0.090 Sum_probs=155.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc---hh
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DC 238 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~ 238 (553)
++.+..+++++++.+|..++.+|..+...-.+ .......+|.+.+++.++++.+|..|+.++..++...+.. ..
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55666677778888888888888665543111 1223457788888888888888888888888887532211 11
Q ss_pred hhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-
Q 008806 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE- 314 (553)
Q Consensus 239 ~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~- 314 (553)
....+|.+..++++.++.+|..++.+|+.++..-.. .......+|.+.+++.++++.+|..|+.+|..++..-+..
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 233678888888888888888888888888642111 1112357889999999988999999999998887532111
Q ss_pred --HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH---HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhh
Q 008806 315 --LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (553)
Q Consensus 315 --~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~ 387 (553)
-.....+|.+..++.+++..+|..++.+++.++..-.. .......+|.+..+++++++.+|..|+.+|..++.
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 12245678888888888999999999999988742211 11233567888888888888888888888877653
No 58
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.46 E-value=5.6e-11 Score=120.01 Aligned_cols=302 Identities=14% Similarity=0.037 Sum_probs=197.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc----hhhhhhHHHHHHHhhhC-CChhHHHHHHHHHHHhhccCCc-ch
Q 008806 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP-QD 237 (553)
Q Consensus 164 l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~----~~~~~~l~p~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~-~~ 237 (553)
.+|.+.+++.+++..|+..++.+|..++..-++ .......+|.+..++.+ .+.+++..++.+|..++..-.. ..
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~ 170 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH
Confidence 467777777888888888888888887752111 11223456777777765 5677888888888877753111 11
Q ss_pred hhhchHHHHHHhc------------------CCCCHHHHHHHHHHHHHHHHHhCC--C-c-cccchHHHHHHhcC-----
Q 008806 238 CVAHILPVIVNFS------------------QDKSWRVRYMVANQLYELCEAVGP--E-P-TRMDLVPAYVRLLR----- 290 (553)
Q Consensus 238 ~~~~ll~~l~~l~------------------~d~~~~vR~~~~~~l~~l~~~~~~--~-~-~~~~llp~l~~ll~----- 290 (553)
+....+|.+.+++ ...+..|+..++.+|.+++..-.. . . ...-+++.++.+++
T Consensus 171 I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~ 250 (584)
T 3l6x_A 171 IVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ 250 (584)
T ss_dssp HHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcc
Confidence 2223455555543 122468888888888888642100 0 0 01235666666654
Q ss_pred -CCcHHHHHHHHHHHHHHHHhhCHH---------------------------H-HHHhHHHHHHHhcc-CCcHHHHHHHH
Q 008806 291 -DNEAEVRIAAAGKVTKFCRILNPE---------------------------L-AIQHILPCVKELSS-DSSQHVRSALA 340 (553)
Q Consensus 291 -d~~~~vr~~a~~~l~~~~~~~~~~---------------------------~-~~~~l~~~l~~l~~-d~~~~vr~~~~ 340 (553)
+.+......|+.+|..++.....+ . +....++.+..++. ..+..+++.++
T Consensus 251 ~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa 330 (584)
T 3l6x_A 251 KDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASA 330 (584)
T ss_dssp TCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHH
Confidence 234566777777777665432100 0 11234556666664 45799999999
Q ss_pred HHHHhhhhhhCHH------h-HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh-hHHhhHHHHHHHhhcCC---
Q 008806 341 SVIMGMAPLLGKD------A-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDR--- 409 (553)
Q Consensus 341 ~~l~~l~~~~~~~------~-~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~~~~d~--- 409 (553)
.++..++..-+.. . .....+|.+..+|..++..|+..++.+|..+...-... .+....+|.|..++.+.
T Consensus 331 ~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 331 GAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCS
T ss_pred HHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccc
Confidence 9999997532211 1 12456899999999999999999999999998754432 34567889999998776
Q ss_pred -----CcHHHHHHHHHHHHHHhhhCh---hhhHHHHHHHHHHHccCC--chHHHHHHHHHHHHHHH
Q 008806 410 -----HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDK--VYSIRDAAANNLKRLAE 465 (553)
Q Consensus 410 -----~~~vR~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~D~--~~~VR~~a~~~l~~l~~ 465 (553)
+..+...++.+++.+...-.. .......+|.+..++.+. ...+++.|+.+|..+..
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 356788888888888743111 112334789999999875 88999999999999874
No 59
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.1e-09 Score=112.50 Aligned_cols=450 Identities=11% Similarity=0.115 Sum_probs=286.0
Q ss_pred HHHHHHHh--cCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhh-c----C--CCcHHHHHHHHHHhhccccccCC-
Q 008806 11 IAVLIDEL--KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N----N--DDDDEVLLAMAEELGVFIPYVGG- 80 (553)
Q Consensus 11 i~~ll~~L--~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~-~----~--d~~~~vr~~~~~~l~~l~~~~~~- 80 (553)
+..++..+ +.+.+++|..+.-.+.+.-+.. ++.+.+.+..++.. + . +.++- ..+...+..+.+..++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~e~~~~~~~~~~--~~~~~~l~~lfPi~p~~ 246 (778)
T 3opb_A 170 VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDFDKAVVDFMSSLIVEAEIDVGNDPL--SIIVKTLSELYPSLTTL 246 (778)
T ss_dssp TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSCHH--HHHHHHHHHHTTTTHHH
T ss_pred hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHhhccCCCCccH--HHHHHHHHHHhcCCHHH
Confidence 55555444 4778889988887777764444 45555666665553 2 1 22222 2223333333222211
Q ss_pred --cch-hhcchhHHHhhh-ccchhHHHHHHHHHHHHHHhhcC-hhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCC
Q 008806 81 --VEH-AHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMR-ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (553)
Q Consensus 81 --~~~-~~~l~~~l~~l~-~~~~~~vR~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 155 (553)
.-+ .+.+.+.+.... ...+..+..++++.+...|..=. .+-+....+|.+.+.+++ ..+|..++-.+..+...
T Consensus 247 ~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~ 324 (778)
T 3opb_A 247 CSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSF 324 (778)
T ss_dssp HHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGG
T ss_pred HHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcC
Confidence 111 122344444333 34455566667666665553211 123345567888877765 46788777777766543
Q ss_pred CC--hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc-hhh--hhhHHHHHHHhhhC-CChhHHHHHHHHHHHh
Q 008806 156 AP--DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHL--KTDIMSIFEDLTQD-DQDSVRLLAVEGCAAL 229 (553)
Q Consensus 156 ~~--~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~-~~~--~~~l~p~l~~~~~d-~~~~vr~~a~~~l~~l 229 (553)
.+ .....++.+.+.+.+.+++...|+.+++.|+-+...-.- +.+ .+..++.+.+++++ ++..+-..++..+.++
T Consensus 325 ~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NL 404 (778)
T 3opb_A 325 TKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANL 404 (778)
T ss_dssp GTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHT
T ss_pred CCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 22 225677899999988887777799999999877542110 111 12346666666764 5667777888888888
Q ss_pred hccCCcc-------------------------h----------------hhhchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 008806 230 GKLLEPQ-------------------------D----------------CVAHILPVIVNFSQDKSWRVRYMVANQLYEL 268 (553)
Q Consensus 230 ~~~~~~~-------------------------~----------------~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l 268 (553)
....+.. . .....+|.+..++...++.+|..++++|..+
T Consensus 405 t~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nL 484 (778)
T 3opb_A 405 STLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNI 484 (778)
T ss_dssp TCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred cCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7753310 0 0112678888888889999999999999999
Q ss_pred HHHhCC--CccccchHHHHHHhcCCCcHH---HHHHHHHHHHHHHHhhCHHHHH-----HhHHHHHHHhccC-CcH----
Q 008806 269 CEAVGP--EPTRMDLVPAYVRLLRDNEAE---VRIAAAGKVTKFCRILNPELAI-----QHILPCVKELSSD-SSQ---- 333 (553)
Q Consensus 269 ~~~~~~--~~~~~~llp~l~~ll~d~~~~---vr~~a~~~l~~~~~~~~~~~~~-----~~l~~~l~~l~~d-~~~---- 333 (553)
+..-.. ....+..++.+++++.+.... +|..|+.+|..+.-..++.... ...+|.+..++.. +..
T Consensus 485 S~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~ 564 (778)
T 3opb_A 485 TRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564 (778)
T ss_dssp HTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccc
Confidence 743110 112345788888888776543 8999999999988655544321 1466777788762 221
Q ss_pred ---------HHHHHHHHHHHhhhhhhCH------H-hHH-HhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch---hh
Q 008806 334 ---------HVRSALASVIMGMAPLLGK------D-ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL 393 (553)
Q Consensus 334 ---------~vr~~~~~~l~~l~~~~~~------~-~~~-~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~ 393 (553)
..+..++.++..++..-+. . ... ...+|.+..++.+++..||++|+.++..++..-.. +.
T Consensus 565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~ 644 (778)
T 3opb_A 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKF 644 (778)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGT
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 2377888899999875421 1 122 25789999999999999999999999999864321 11
Q ss_pred HH---hh---HHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh---hhhH-HHHHHHHHHHccC--CchHHHHHHHHHHH
Q 008806 394 LS---QS---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFD-DKLGALCMQWLQD--KVYSIRDAAANNLK 461 (553)
Q Consensus 394 ~~---~~---ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---~~~~-~~l~~~l~~~l~D--~~~~VR~~a~~~l~ 461 (553)
+. +. =++.|..++...+..+|.++..++..+....+. ..+. ...++.++.++++ ++.++|..++.++.
T Consensus 645 ~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 645 FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 11 11 267788899999999999999999888543221 1111 3567778888888 89999999999999
Q ss_pred HHHH
Q 008806 462 RLAE 465 (553)
Q Consensus 462 ~l~~ 465 (553)
.++.
T Consensus 725 NL~~ 728 (778)
T 3opb_A 725 GLFE 728 (778)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9997
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.44 E-value=4.1e-11 Score=120.11 Aligned_cols=179 Identities=12% Similarity=0.017 Sum_probs=113.1
Q ss_pred hhHHHhhhccchhHHHHHHHHHHHHHHhhcCh---hhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHH--
Q 008806 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT-- 162 (553)
Q Consensus 88 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-- 162 (553)
+|.+..++..+++.++..|+.++..++..-+. .......+|.+.+++++++..++..++..+..++.. +++.+.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 34445555566777888888888887754332 122334678888888888888888888888888764 233333
Q ss_pred ---HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhhCc-hhhhhhHHHHHHHhh--------hCC--------ChhHHHH
Q 008806 163 ---ELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLT--------QDD--------QDSVRLL 221 (553)
Q Consensus 163 ---~l~~~l~~ll~-d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~l~p~l~~~~--------~d~--------~~~vr~~ 221 (553)
..+|.+.+++. ++++.+++.++.+|..++..-.. ..+.+..+|.+..++ .++ +..+...
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 34788888888 78899999999999999876211 123336778887777 222 3456668
Q ss_pred HHHHHHHhhccCCc--chhh--hchHHHHHHhcCC------CCHHHHHHHHHHHHHH
Q 008806 222 AVEGCAALGKLLEP--QDCV--AHILPVIVNFSQD------KSWRVRYMVANQLYEL 268 (553)
Q Consensus 222 a~~~l~~l~~~~~~--~~~~--~~ll~~l~~l~~d------~~~~vR~~~~~~l~~l 268 (553)
|+.++..++.. +. +... +..+|.+..++.+ .+.++...++..+..+
T Consensus 163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 88888888865 21 1111 1456666555442 3334455555555554
No 61
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.44 E-value=1.7e-14 Score=129.18 Aligned_cols=187 Identities=22% Similarity=0.222 Sum_probs=138.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHH
Q 008806 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248 (553)
Q Consensus 169 ~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 248 (553)
..+++|+++.||..++..++ . ..+..+++|+++.||..++..+ +. +.+..
T Consensus 56 ~~ll~d~~~~VR~~AA~~l~-------~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ 105 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYSP-------V--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA 105 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSC-------G--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred HHHhcCCCHHHHHHHHHhCC-------H--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence 35678999999999988642 1 1245678999999999998652 21 34677
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhc
Q 008806 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS 328 (553)
Q Consensus 249 l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~ 328 (553)
+++|++|.||.+++..+ +. +.+..+++|+++.||.+++..+ +. +.+..++
T Consensus 106 ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~ 155 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM 155 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred HHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence 88999999999988753 11 2356678999999999988742 21 3455778
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcC
Q 008806 329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (553)
Q Consensus 329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d 408 (553)
+|++|.||..++..+ +. +.+..+++|+++.||..++..+ +. +.+..++.|
T Consensus 156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D 205 (244)
T 1lrv_A 156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHD 205 (244)
T ss_dssp TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGC
T ss_pred cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcC
Confidence 999999999998751 11 3455788999999999998763 11 345667899
Q ss_pred CCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 008806 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (553)
Q Consensus 409 ~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~ 461 (553)
++|.||..++..++ .+.+..+ +|++..||.++.+.||
T Consensus 206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 99999999988754 1445456 9999999999987765
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.43 E-value=2.4e-11 Score=121.84 Aligned_cols=337 Identities=12% Similarity=0.068 Sum_probs=221.0
Q ss_pred HHHHHHHhcCCCcchhhhHhhhhHhhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhh
Q 008806 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHL 199 (553)
Q Consensus 127 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~ 199 (553)
+|.+.++++++++.++..++..+..++..-.+. .....+|.+.++++++++.++..++.+|..++..-++ ...
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 566667777888899999999999987543321 3345689999999999999999999999999873111 112
Q ss_pred hhhHHHHHHHhhh-CCChhHHHHHHHHHHHhhccCCc-chhhhchHHHHHHhc--------CCC--------CHHHHHHH
Q 008806 200 KTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFS--------QDK--------SWRVRYMV 261 (553)
Q Consensus 200 ~~~l~p~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~--------~d~--------~~~vR~~~ 261 (553)
....+|.+.+++. +++.+++..++.+|..++..-.. .......+|.+.+++ .+. +..+.+.+
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 2346888999998 78899999999999999976211 112236778888877 222 34566689
Q ss_pred HHHHHHHHHHhCC---Cccc-cchHHHHHHhcCC------CcHHHHHHHHHHHHHHHHhh--------------------
Q 008806 262 ANQLYELCEAVGP---EPTR-MDLVPAYVRLLRD------NEAEVRIAAAGKVTKFCRIL-------------------- 311 (553)
Q Consensus 262 ~~~l~~l~~~~~~---~~~~-~~llp~l~~ll~d------~~~~vr~~a~~~l~~~~~~~-------------------- 311 (553)
+.+|.+++.. +. .... +..+|.++.++.+ .+..+...++..+..++...
T Consensus 164 ~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~ 242 (457)
T 1xm9_A 164 TGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242 (457)
T ss_dssp HHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred HHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccc
Confidence 9999998853 11 0111 2578888887763 23344555554444432100
Q ss_pred --------------------------------CHH-HHHHhHHHHHHHhcc-CCcHHHHHHHHHHHHhhhhhhCHH----
Q 008806 312 --------------------------------NPE-LAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKD---- 353 (553)
Q Consensus 312 --------------------------------~~~-~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~---- 353 (553)
+.+ -+....++.+..++. .++..+++.++.+++.++..-++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~ 322 (457)
T 1xm9_A 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322 (457)
T ss_dssp -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHH
Confidence 000 011223455555554 346788888999998887533221
Q ss_pred ---hH-HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh-hHHhhHHHHHHHhhcCCCc------HHHHHHHHHHH
Q 008806 354 ---AT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHW------RVRLAIIEYIP 422 (553)
Q Consensus 354 ---~~-~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~~~~d~~~------~vR~~~~~~l~ 422 (553)
.+ ....+|.+.+++.+++..|+..|+.+|..+...-... .+....+|.|.+++.+.+. .+...++.+++
T Consensus 323 ~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ 402 (457)
T 1xm9_A 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHH
Confidence 11 1356788899998888899999999988887632221 2335677888888776543 46667777777
Q ss_pred HHHhhhChh---hhHHHHHHHHHHHccCC-chHHHHHHHHHHHHHH
Q 008806 423 LLASQLGVG---FFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLA 464 (553)
Q Consensus 423 ~i~~~~~~~---~~~~~l~~~l~~~l~D~-~~~VR~~a~~~l~~l~ 464 (553)
.+...-+.. ......+|.+..++... +..++..|...|..+.
T Consensus 403 ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 776432221 12234677888888877 7888888888877554
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.43 E-value=2.8e-10 Score=114.98 Aligned_cols=342 Identities=13% Similarity=0.090 Sum_probs=234.1
Q ss_pred hcchhHHHhhhccchhHHHHHHHHHHHHHHhhcCh--h-hhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHH
Q 008806 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--S-DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 161 (553)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 161 (553)
..-++.+..++...++.++..|..++..++..-++ . ....-.+|.+.+++.+++..++..|+..+..++..-+.+.+
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 34556566666677788888888888888753322 1 12334778899999999999999999999999875434422
Q ss_pred -----HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhCc-hhhhhhHHHHHHHhhh------------------CCCh
Q 008806 162 -----TELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQ------------------DDQD 216 (553)
Q Consensus 162 -----~~l~~~l~~ll~d-~~~~Vr~~a~~~l~~l~~~~~~-~~~~~~l~p~l~~~~~------------------d~~~ 216 (553)
...++.+.+++.+ .+..+++.++.+|..++..-.. ..+....+|.|.+++. .++.
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 3357888888876 6789999999999988763221 1223345666666541 2356
Q ss_pred hHHHHHHHHHHHhhccCCc--chhh--hchHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHhC----C--------
Q 008806 217 SVRLLAVEGCAALGKLLEP--QDCV--AHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVG----P-------- 274 (553)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~--~~~~--~~ll~~l~~l~------~d~~~~vR~~~~~~l~~l~~~~~----~-------- 274 (553)
.|+..|+.+|..++..-.. .... ..+++.+..++ .+.+....+.++.+|.+++.... .
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8999999999999864211 1111 12343443332 33556677777888877764321 0
Q ss_pred ------------Cc----cccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCH--HH---H--HHhHHHHHHHhccC
Q 008806 275 ------------EP----TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNP--EL---A--IQHILPCVKELSSD 330 (553)
Q Consensus 275 ------------~~----~~~~llp~l~~ll~-d~~~~vr~~a~~~l~~~~~~~~~--~~---~--~~~l~~~l~~l~~d 330 (553)
.. .....++.++.++. ..++.++.+|+.+|..++..-++ .. . ....+|.+..++.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 00 11235778888885 35689999999999998753211 11 1 13568999999999
Q ss_pred CcHHHHHHHHHHHHhhhhhhCH-HhHHHhHHHHHHHhhCCC--------ChHHHHHHHHHHHHhhhhhch---hhHHhhH
Q 008806 331 SSQHVRSALASVIMGMAPLLGK-DATIEQLLPIFLSLLKDE--------FPDVRLNIISKLDQVNQVIGI---DLLSQSL 398 (553)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~--------~~~VR~~a~~~l~~~~~~~~~---~~~~~~l 398 (553)
++..++..++.++..++..-.. ..+....+|.+.++|... ..++...++.+|+.++..-.. .......
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~ 446 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 9999999999999999875442 333567889999999765 357888999999888643111 1233567
Q ss_pred HHHHHHhhcCC--CcHHHHHHHHHHHHHHh
Q 008806 399 LPAIVELAEDR--HWRVRLAIIEYIPLLAS 426 (553)
Q Consensus 399 l~~l~~~~~d~--~~~vR~~~~~~l~~i~~ 426 (553)
+|.|..++.+. +..++..|..++..+..
T Consensus 447 I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 447 IEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 89999998875 77899999999998874
No 64
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.43 E-value=2.8e-12 Score=118.18 Aligned_cols=223 Identities=14% Similarity=0.123 Sum_probs=153.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HH-H
Q 008806 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--EL-A 316 (553)
Q Consensus 243 l~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~~-~ 316 (553)
.+.+.+.+.+.++.+|..++..|..+...-.. .......+|.++++++++++.+|..|+.+|+.++..-.. .. .
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 44444444555555555555555443332000 011235788888888888888888888888887652111 11 1
Q ss_pred HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH---hHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh-
Q 008806 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID- 392 (553)
Q Consensus 317 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~- 392 (553)
....+|.+..++.++++.+|..++.+++.++...... ......+|.+..+++++++.+|..++.+|+.++..-...
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 2347788888888888999999999999887643322 223457888999999989999999999999887632211
Q ss_pred --hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh---hhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 393 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 393 --~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
.....++|.|..++.+++..+|..++.+++.++..-.. .......+|.+..++.+.++.||..|+.+|+.++.
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 12356788899999999999999999999988742111 11223477888899999999999999999987653
No 65
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.43 E-value=1.4e-10 Score=126.28 Aligned_cols=469 Identities=10% Similarity=0.023 Sum_probs=287.0
Q ss_pred cHHHHHH-HhcC-ccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCc----ch
Q 008806 10 PIAVLID-ELKN-DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV----EH 83 (553)
Q Consensus 10 ~i~~ll~-~L~~-~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~ 83 (553)
.+...++ .+.. .|+..|..|-+.|..+-+ - | +.|......+..-...++++|..++..|...++.++.+ ..
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-s-p-~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~ 83 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRS-S-S-TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL 83 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-S-T-THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-C-h-hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 3445553 3332 378999999999988743 2 3 34666666554422237899999999998777644443 22
Q ss_pred ---hhcchhHHHhhhc-cchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCc-chhhhHhhhhH----hhcC
Q 008806 84 ---AHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWF-TARVSACGLFH----IAYP 154 (553)
Q Consensus 84 ---~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~-~~r~~~~~~l~----~l~~ 154 (553)
.+.++..+..... ++...+|...+.++..++...-++ .++.+++-+.+..+..+. ..-....+++. .+..
T Consensus 84 ~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 84 QMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp HHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHh
Confidence 2334444444221 345789999999999998775332 344555555555443222 22223344444 2222
Q ss_pred C---CChH-----------H--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhh-hhhHHHHHHHhh
Q 008806 155 S---APDI-----------L--------KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL-KTDIMSIFEDLT 211 (553)
Q Consensus 155 ~---~~~~-----------~--------~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~l~p~l~~~~ 211 (553)
. .+.+ . .+.++..+.+.....++.++..+.++++.+...++...+ ...+++.+...+
T Consensus 163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L 242 (980)
T 3ibv_A 163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL 242 (980)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHT
T ss_pred cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHc
Confidence 1 1111 0 112223333333346888999999999999887765433 256778777777
Q ss_pred hCCChhHHHHHHHHHHHhhccCCcchhhhchH------HHHHHhcC-CCCHHHHHHHHHHHHHHHHH---h--CCC----
Q 008806 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL------PVIVNFSQ-DKSWRVRYMVANQLYELCEA---V--GPE---- 275 (553)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll------~~l~~l~~-d~~~~vR~~~~~~l~~l~~~---~--~~~---- 275 (553)
++ +.+|.+|++++..+...-........++ +.+..+.. +.+...+...++.+..++.. + ...
T Consensus 243 ~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~ 320 (980)
T 3ibv_A 243 QI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSP 320 (980)
T ss_dssp TS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CH
T ss_pred CC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccch
Confidence 76 7899999999998876633311111122 22222222 45666776666666544432 1 110
Q ss_pred -------ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh---CH-----H---HHHHhHHHHHHHhcc---C----
Q 008806 276 -------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL---NP-----E---LAIQHILPCVKELSS---D---- 330 (553)
Q Consensus 276 -------~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~---~~-----~---~~~~~l~~~l~~l~~---d---- 330 (553)
.....++|.++.++.+++.+|-..++..+..+.... +. + .+...+++.+..-+. |
T Consensus 321 ~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~ 400 (980)
T 3ibv_A 321 ELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWD 400 (980)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCC
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccc
Confidence 111358889999999988888777777766665542 11 1 223334444433221 1
Q ss_pred C----c-----HHHHHHHHHHHHhhhhhhCHHhHHH----hHHHHHHHhhC---CCChHHHHHHHHHHHHhhhhhchhh-
Q 008806 331 S----S-----QHVRSALASVIMGMAPLLGKDATIE----QLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIGIDL- 393 (553)
Q Consensus 331 ~----~-----~~vr~~~~~~l~~l~~~~~~~~~~~----~l~p~l~~~l~---d~~~~VR~~a~~~l~~~~~~~~~~~- 393 (553)
. + ...|.... .+-..+..+|++...+ .+.+.+.+.+. ..++..+++++.+++.+++.+....
T Consensus 401 ~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~ 479 (980)
T 3ibv_A 401 DDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDA 479 (980)
T ss_dssp CCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGG
T ss_pred cccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccc
Confidence 1 1 14676666 6666666778777766 66677766663 3458899999999999988764311
Q ss_pred -------HHhhHHHHHHHhhc-----CCCcHHHHHHHHHHHHHHhhhChh-hhHHHHHHHHHH--HccCCchHHHHHHHH
Q 008806 394 -------LSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQ--WLQDKVYSIRDAAAN 458 (553)
Q Consensus 394 -------~~~~ll~~l~~~~~-----d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~--~l~D~~~~VR~~a~~ 458 (553)
..+.+++.+..+++ ++++.+|.+++.++++.++.+... .+.+.+++.++. .+.+++..||.+|+.
T Consensus 480 ~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~ 559 (980)
T 3ibv_A 480 FFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWY 559 (980)
T ss_dssp TBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHH
T ss_pred ccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHH
Confidence 12456777777755 788999999999999999887543 355667777777 777888999999999
Q ss_pred HHHHHHHHhChhHH--hhhhhhhhhhhhh
Q 008806 459 NLKRLAEEFGPEWA--MQHITPQKSHVLD 485 (553)
Q Consensus 459 ~l~~l~~~~~~~~~--~~~i~p~l~~~l~ 485 (553)
++.++++.+++... .+.++..+...+.
T Consensus 560 af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 560 LFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp HHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 99999998875321 1334444444443
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.42 E-value=1.6e-10 Score=120.83 Aligned_cols=299 Identities=14% Similarity=0.087 Sum_probs=168.6
Q ss_pred cchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCC--------cchhhhHhhhhHhhcCCCChHHHHHHHHHH
Q 008806 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEW--------FTARVSACGLFHIAYPSAPDILKTELRSIY 168 (553)
Q Consensus 97 ~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~--------~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l 168 (553)
..++.+|..|+.++|-+...... . .+..+...+.+++ ..+|..++..+|.++..-+.+ ++.+.+
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~-~----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e---ev~e~L 477 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR-D----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI---EVYEAL 477 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH-H----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH---HHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH-H----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH---HHHHHH
Confidence 34567777777777777655432 1 2333333333222 457777777777766543322 344445
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHH
Q 008806 169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248 (553)
Q Consensus 169 ~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 248 (553)
.+++.|++..+|..++.+||.+.-.-++....+.++..+ .++.++.+|..++.+|+-+. ++.+.. .-..+..
T Consensus 478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e~~~e~vrR~aalgLGll~--~g~~e~---~~~li~~ 549 (963)
T 4ady_A 478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QETQHGNITRGLAVGLALIN--YGRQEL---ADDLITK 549 (963)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--TTCGGG---GHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHhhh--CCChHH---HHHHHHH
Confidence 555556666777777777777655555555555555543 34566677777777777653 222222 2222333
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH-HHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHH-
Q 008806 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP-AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE- 326 (553)
Q Consensus 249 l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp-~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~- 326 (553)
+..+.+|-+|.+++.+++--....|+. ..+. .+-.+.+|.+..||.+|+.+|+.+.- +.. ..+|.+..
T Consensus 550 L~~~~dp~vRygaa~alglAyaGTGn~----~aIq~LL~~~~~d~~d~VRraAViaLGlI~~--g~~----e~v~rlv~~ 619 (963)
T 4ady_A 550 MLASDESLLRYGGAFTIALAYAGTGNN----SAVKRLLHVAVSDSNDDVRRAAVIALGFVLL--RDY----TTVPRIVQL 619 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTTTSCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS--SSC----SSHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHhhcc--CCH----HHHHHHHHH
Confidence 445677778887777766544444432 2222 33333456677788887777775532 221 12333333
Q ss_pred hccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHH
Q 008806 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVE 404 (553)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~ 404 (553)
+.++.++.||..++.+++.++..-+. ..++..+..+.+|.+..||.+|+.+|+.+...-.... ....++..|..
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~ 695 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLS 695 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence 44567788888888888777654333 2345566677778888888888888887765332220 01333444444
Q ss_pred hhcC--CCcHHHHHHHHHHHHHH
Q 008806 405 LAED--RHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 405 ~~~d--~~~~vR~~~~~~l~~i~ 425 (553)
...| .+...|..+..+.|.+-
T Consensus 696 ~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 696 VITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHhcccccHHHHHHHHHHHHHHh
Confidence 4444 34556666665555543
No 67
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.41 E-value=1.9e-09 Score=117.41 Aligned_cols=459 Identities=11% Similarity=0.032 Sum_probs=278.2
Q ss_pred HHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccC---Cc---------------chh
Q 008806 23 IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVG---GV---------------EHA 84 (553)
Q Consensus 23 ~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~---~~---------------~~~ 84 (553)
..+|.+.+..++.++++.-|+. |+.+++.+.+....++.........|..+.+.+. .+ ...
T Consensus 114 ~~i~nKLa~~la~I~~~~~p~~-Wp~~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~ 192 (1023)
T 4hat_C 114 KNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEF 192 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhh-chHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 5567778888999988877754 8888888888333344444444444444333211 00 112
Q ss_pred hcchhHHHhhhc-cchhHHHHHHHHHHHHHHhhcChhhh-hhhHHHHHH-HHhcCCCcchhhhHhhhhHhhcC-CC-Ch-
Q 008806 85 HVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDL-VDWYIPLVK-RLAAGEWFTARVSACGLFHIAYP-SA-PD- 158 (553)
Q Consensus 85 ~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~-~~~~l~~l~-~~~~~~~~~~r~~~~~~l~~l~~-~~-~~- 158 (553)
..+++++...+. ..++.+...++++++....-++-..+ ...+++.+. +++++ +..|..|++++..+.. .. ++
T Consensus 193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~--~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS--PDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS--HHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCC--HHHHHHHHHHHHHHHccccCCch
Confidence 345555555443 45677788899999998887665443 345778777 77654 4689999999998876 33 23
Q ss_pred -HHHH-------HHHHHH-HHh-------------cCCCCHHHHHHHHHHHHHHHhhhCc-----hh---hhhhHHHHHH
Q 008806 159 -ILKT-------ELRSIY-TQL-------------CQDDMPMVRRSAASNLGKFAATVEP-----AH---LKTDIMSIFE 208 (553)
Q Consensus 159 -~~~~-------~l~~~l-~~l-------------l~d~~~~Vr~~a~~~l~~l~~~~~~-----~~---~~~~l~p~l~ 208 (553)
++.+ .++..+ ..+ ..+.+.+..+..+..+..+++.... +. .....+..+.
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 2221 222212 111 1234566666677776666654322 11 1112233555
Q ss_pred HhhhCCChhHHHHHHHHHHHhhccCCcc-----h---hhhchHHHHHHhcC----------C-CCH----------HHHH
Q 008806 209 DLTQDDQDSVRLLAVEGCAALGKLLEPQ-----D---CVAHILPVIVNFSQ----------D-KSW----------RVRY 259 (553)
Q Consensus 209 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~-----~---~~~~ll~~l~~l~~----------d-~~~----------~vR~ 259 (553)
.....++.++-..+++.+..+++.+-.+ . ....+.+.+.+.+. | .+| ....
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f 430 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY 430 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHH
Confidence 5666778888888888888887642211 1 12234444433221 1 112 0111
Q ss_pred -HHHHHHHHHHHHhCCCccccchHHHHHHhcCC--CcHHHHHHHHHHHHHHHHhhCHH---HHHHhHHHHHHHhcc----
Q 008806 260 -MVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSS---- 329 (553)
Q Consensus 260 -~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d--~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~l~~---- 329 (553)
..-.+|..+....+. ...+.+++.+.+.+.+ .+|..|.+++.+++.++....++ .+...++|.+..++.
T Consensus 431 ~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 431 KSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 111445555443332 2233455666555554 57999999999999998877654 445677777777775
Q ss_pred -CCcHHHHHHHHHHHHhhhhhhCHH-hHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh----------HHhh
Q 008806 330 -DSSQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------LSQS 397 (553)
Q Consensus 330 -d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~----------~~~~ 397 (553)
|+...||.+++..+|.+++.+... .+.+.++..+.+.+.|+++.|..+|+.++..+++..+... +.+.
T Consensus 510 ~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~ 589 (1023)
T 4hat_C 510 KDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence 456778899999999999877532 2356677777888888899999999999999998765432 2355
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh----hHHHHHHHHHH----Hc----cCCc-----hHH--HHHHHH
Q 008806 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQ----WL----QDKV-----YSI--RDAAAN 458 (553)
Q Consensus 398 ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~----~~~~l~~~l~~----~l----~D~~-----~~V--R~~a~~ 458 (553)
++..+.....+-+..-+..+.++++.++...+... +...+++.+.. +. +|+. ..+ -...++
T Consensus 590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~ 669 (1023)
T 4hat_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIK 669 (1023)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHH
Confidence 66666666666677888899999999999887543 23333333322 11 1221 112 233466
Q ss_pred HHHHHHHHhChhHHh--hhhhhhhhhhhh
Q 008806 459 NLKRLAEEFGPEWAM--QHITPQKSHVLD 485 (553)
Q Consensus 459 ~l~~l~~~~~~~~~~--~~i~p~l~~~l~ 485 (553)
+++.++...|..+.. ..+.|.+.++.+
T Consensus 670 ~~~~v~~~lg~~f~~~~~~i~~~~l~~y~ 698 (1023)
T 4hat_C 670 TNVAVCTSMGADFYPQLGHIYYNMLQLYR 698 (1023)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 777888888876653 456666665544
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.40 E-value=1.6e-10 Score=120.89 Aligned_cols=54 Identities=22% Similarity=0.164 Sum_probs=24.0
Q ss_pred CCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 008806 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 368 ~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~ 425 (553)
++.++.||.+++.++|.++..-+. ..++..|..+..|++..||++|+.+++.++
T Consensus 622 ~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 622 KSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 344445555555555444322111 223344444444555555555555554444
No 69
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.39 E-value=7.9e-10 Score=120.31 Aligned_cols=455 Identities=12% Similarity=0.092 Sum_probs=279.0
Q ss_pred cHHHHHHHhcCc---cHHHHHHHhhhHHHHHHhhChH----H---HhhhhhhhhhhcC--CCcHHHHHHHHHHhhccccc
Q 008806 10 PIAVLIDELKND---DIQLRLNSIRRLSTIARALGEE----R---TRKELIPFLSENN--DDDDEVLLAMAEELGVFIPY 77 (553)
Q Consensus 10 ~i~~ll~~L~~~---d~~~R~~a~~~l~~i~~~~~~~----~---~~~~ll~~l~~~~--d~~~~vr~~~~~~l~~l~~~ 77 (553)
.+......|.+. +..+|.-|+..|....+.++++ + .++.++..+.... ++.+-+|..++.++..++..
T Consensus 41 aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 41 GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 344455556543 7899999999998766666554 3 2455666655532 35677999999999988875
Q ss_pred cCCcchhhcchhHHHhhhccchh-HHHHHHHHHHHHHHhhcCh-----------------hhh--------hhhHHHHHH
Q 008806 78 VGGVEHAHVLLPPLETLCTVEET-CVRDKAVESLCRIGSQMRE-----------------SDL--------VDWYIPLVK 131 (553)
Q Consensus 78 ~~~~~~~~~l~~~l~~l~~~~~~-~vR~~a~~~l~~l~~~~~~-----------------~~~--------~~~~l~~l~ 131 (553)
..+ ..|...++-+..+.+..+. ..-...++.|..+.+.+.. +.+ .+.++.++.
T Consensus 121 ~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~ 199 (980)
T 3ibv_A 121 LYP-SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMML 199 (980)
T ss_dssp HTT-TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hCc-ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHH
Confidence 433 3555556555554433222 2233344445433333211 000 112333333
Q ss_pred HHhcCCCcchhhhHhhhhHhhcCCCChH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHH---
Q 008806 132 RLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI--- 206 (553)
Q Consensus 132 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~--- 206 (553)
+..+..+..++..+.++++....-.+.. ..+.+++.+.+++.+ +.+|.+++++|..+...-.+......++..
T Consensus 200 ~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 200 AYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 4333456677888888888887766655 236788889998876 899999999999988764432222222222
Q ss_pred ---HHHhhh-CCChhHHHHHHHHHHHhhcc------CC----cc------hhhhchHHHHHHhcCCCCHHHHHHHHHHHH
Q 008806 207 ---FEDLTQ-DDQDSVRLLAVEGCAALGKL------LE----PQ------DCVAHILPVIVNFSQDKSWRVRYMVANQLY 266 (553)
Q Consensus 207 ---l~~~~~-d~~~~vr~~a~~~l~~l~~~------~~----~~------~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~ 266 (553)
+..+.. +++.++++..++.+..++.. .+ .+ .....+++.+.....+++..|-..++..+.
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~ 357 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS 357 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 111122 45556655444444333322 11 00 223457888888888888888777777766
Q ss_pred HHHHHh---CC-Ccccc-------chHHHHHHhcC-------C-----Cc----HHHHHHHHHHHHHHHHhhCHHHHHH-
Q 008806 267 ELCEAV---GP-EPTRM-------DLVPAYVRLLR-------D-----NE----AEVRIAAAGKVTKFCRILNPELAIQ- 318 (553)
Q Consensus 267 ~l~~~~---~~-~~~~~-------~llp~l~~ll~-------d-----~~----~~vr~~a~~~l~~~~~~~~~~~~~~- 318 (553)
.+.... +. ....+ .+++.+.+.+. | ++ .+.|+... .+-..+..++++.+.+
T Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 358 DLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHH
Confidence 666443 21 11111 23333333331 1 11 24566655 6777777788887777
Q ss_pred ---hHHHHHHHhcc---CCcHHHHHHHHHHHHhhhhhhCHH--------hHHHhHHHHHHHhhC-----CCChHHHHHHH
Q 008806 319 ---HILPCVKELSS---DSSQHVRSALASVIMGMAPLLGKD--------ATIEQLLPIFLSLLK-----DEFPDVRLNII 379 (553)
Q Consensus 319 ---~l~~~l~~l~~---d~~~~vr~~~~~~l~~l~~~~~~~--------~~~~~l~p~l~~~l~-----d~~~~VR~~a~ 379 (553)
.+.+.+.+.+. +.+|+.+++++.+++.+++.+... ...+.+++.+..+++ ++++.||..++
T Consensus 437 ~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~ 516 (980)
T 3ibv_A 437 MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYM 516 (980)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 66666666552 467999999999999999876531 123457788877765 88899999999
Q ss_pred HHHHHhhhhhchhh-HHhhHHHHHHH--hhcCCCcHHHHHHHHHHHHHHhhhChh--hhHHHHHHHHHHHccC---C---
Q 008806 380 SKLDQVNQVIGIDL-LSQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQD---K--- 448 (553)
Q Consensus 380 ~~l~~~~~~~~~~~-~~~~ll~~l~~--~~~d~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~D---~--- 448 (553)
..++...+.+..+. +.+.+++.+.. .+.+++.++|.+++.++..+.+.+... .+.+.++..+..++.- +
T Consensus 517 ~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~ 596 (980)
T 3ibv_A 517 EILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTD 596 (980)
T ss_dssp HHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCc
Confidence 99999998875431 22445555555 556788999999999999999987653 2334455444444431 1
Q ss_pred ---------------chHHHHHHHHHHHHHHHHhC
Q 008806 449 ---------------VYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 449 ---------------~~~VR~~a~~~l~~l~~~~~ 468 (553)
..+=+....+++|.++...+
T Consensus 597 ~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 597 MDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp --CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred ccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 01235668999999998875
No 70
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.38 E-value=1.5e-08 Score=110.50 Aligned_cols=447 Identities=11% Similarity=0.055 Sum_probs=260.5
Q ss_pred CccHHHHHHHhhhHHHHHHh----hChHH---Hhhhhhhhhhh-cCCC-----cHHHHHHHHHHhhccccccCCcchhhc
Q 008806 20 NDDIQLRLNSIRRLSTIARA----LGEER---TRKELIPFLSE-NNDD-----DDEVLLAMAEELGVFIPYVGGVEHAHV 86 (553)
Q Consensus 20 ~~d~~~R~~a~~~l~~i~~~----~~~~~---~~~~ll~~l~~-~~d~-----~~~vr~~~~~~l~~l~~~~~~~~~~~~ 86 (553)
+.++.+|.-|+..|....+. +++++ .+..++..+.. ..++ ++-++...+.++..++...-+ ..|..
T Consensus 60 s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~ 138 (1023)
T 4hat_C 60 STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPE 138 (1023)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchH
Confidence 45667777777777654332 33322 23445555444 2222 345667778888777764322 34666
Q ss_pred chhHHHhhhccchhHHHHHHHHHHHHHHhhc---Chh--------hh-------hhhHHHHHHHHhc-CCCcchhhhHhh
Q 008806 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQM---RES--------DL-------VDWYIPLVKRLAA-GEWFTARVSACG 147 (553)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~---~~~--------~~-------~~~~l~~l~~~~~-~~~~~~r~~~~~ 147 (553)
+++-+..+.+.. +......+..|..+.+.+ ..+ .+ .+.+++++.+.++ ..+..+...+.+
T Consensus 139 ~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~ 217 (1023)
T 4hat_C 139 FIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLE 217 (1023)
T ss_dssp HHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 666665555432 234555666666655542 111 00 1234555555443 344566667777
Q ss_pred hhHhhcCCCChH--HHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHhh-h-Cch-hhhh-------hHHHHH-HH----
Q 008806 148 LFHIAYPSAPDI--LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAAT-V-EPA-HLKT-------DIMSIF-ED---- 209 (553)
Q Consensus 148 ~l~~l~~~~~~~--~~~~l~~~l~-~ll~d~~~~Vr~~a~~~l~~l~~~-~-~~~-~~~~-------~l~p~l-~~---- 209 (553)
+++....-++.. ..+.+++.+. +++. ++..|..++++|..++.. . ++. .+.+ .+++.+ ..
T Consensus 218 ~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~ 295 (1023)
T 4hat_C 218 SLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295 (1023)
T ss_dssp HHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 777766655444 2245677776 6664 577999999999998862 2 221 1111 112211 10
Q ss_pred ---------hhhCCChhHHHHHHHHHHHhhcc----CCcc-hhhh---chHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 008806 210 ---------LTQDDQDSVRLLAVEGCAALGKL----LEPQ-DCVA---HILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (553)
Q Consensus 210 ---------~~~d~~~~vr~~a~~~l~~l~~~----~~~~-~~~~---~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~ 272 (553)
...+++.+....-+..+..+++. +... ...+ ..+..+......+++.+-..+...-..+...+
T Consensus 296 ~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l 375 (1023)
T 4hat_C 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADL 375 (1023)
T ss_dssp TCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Confidence 01223444444444455444433 1111 1111 12234555556667777566666655565543
Q ss_pred CCC-cccc-------chHHHHHHhcCC---------------------CcHHHHH-HHHHHHHHHHHhhCHHHHHHhHHH
Q 008806 273 GPE-PTRM-------DLVPAYVRLLRD---------------------NEAEVRI-AAAGKVTKFCRILNPELAIQHILP 322 (553)
Q Consensus 273 ~~~-~~~~-------~llp~l~~ll~d---------------------~~~~vr~-~a~~~l~~~~~~~~~~~~~~~l~~ 322 (553)
-.+ .... .+++.+.+.+.- .+....- ..-..|..+.. +......+.+.+
T Consensus 376 ~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~-l~~~~~~~~~~~ 454 (1023)
T 4hat_C 376 FYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMIS 454 (1023)
T ss_dssp TTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHH-HCHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHH
Confidence 322 1111 344444443321 1111111 01144444433 333455677788
Q ss_pred HHHHhccC--CcHHHHHHHHHHHHhhhhhhCHH---hHHHhHHHHHHHhhC-----CCChHHHHHHHHHHHHhhhhhchh
Q 008806 323 CVKELSSD--SSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID 392 (553)
Q Consensus 323 ~l~~l~~d--~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~-----d~~~~VR~~a~~~l~~~~~~~~~~ 392 (553)
.+.+.+.+ .+|+.|++++.+++.++....++ .+...++|.+.+++. |+...||..++..+|.+.+.+...
T Consensus 455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~ 534 (1023)
T 4hat_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1023)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 87766653 68999999999999999887654 335677787887775 355668889999999999877532
Q ss_pred h-HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh----------hHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 008806 393 L-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----------FDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (553)
Q Consensus 393 ~-~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~----------~~~~l~~~l~~~l~D~~~~VR~~a~~~l~ 461 (553)
. +.+.+++.+.+.+.+++.++..+|+.++..++..++... +.+.++..+.....+-...-+..+.++++
T Consensus 535 ~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~ 614 (1023)
T 4hat_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1023)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 336677777777888899999999999999999876543 55666666777777767778889999999
Q ss_pred HHHHHhChhH
Q 008806 462 RLAEEFGPEW 471 (553)
Q Consensus 462 ~l~~~~~~~~ 471 (553)
.+++..++..
T Consensus 615 ~vi~~~~~~~ 624 (1023)
T 4hat_C 615 IIISEERSVA 624 (1023)
T ss_dssp HHHTTCCSHH
T ss_pred HHHHhCCCHh
Confidence 9999988654
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.38 E-value=2.2e-10 Score=113.03 Aligned_cols=303 Identities=11% Similarity=0.048 Sum_probs=203.8
Q ss_pred HHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHHhhhCchhh---hhhHH----------HHHHHhhhCCC-
Q 008806 162 TELRSIYTQLCQDD------------MPMVRRSAASNLGKFAATVEPAHL---KTDIM----------SIFEDLTQDDQ- 215 (553)
Q Consensus 162 ~~l~~~l~~ll~d~------------~~~Vr~~a~~~l~~l~~~~~~~~~---~~~l~----------p~l~~~~~d~~- 215 (553)
...+|.+.+++++. ++.+|..++++|.+++..-+++.. ...++ +.+.+.+...+
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 34567777777643 379999999999999986654211 11122 33333333221
Q ss_pred -hh-----HHH-------HHHHHHHHhhccCCcch----hhhchHHHHHHhcC-----------CCCHHHHHHHHHHHHH
Q 008806 216 -DS-----VRL-------LAVEGCAALGKLLEPQD----CVAHILPVIVNFSQ-----------DKSWRVRYMVANQLYE 267 (553)
Q Consensus 216 -~~-----vr~-------~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~-----------d~~~~vR~~~~~~l~~ 267 (553)
.+ |+. .|+.+|..++.. ++. .....++.+..++. +.+..++..++++|.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 11 555 788888888643 211 11234555555542 1346789999999999
Q ss_pred HHHHhCC--Ccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HH-HHhHHHHHHHh-ccCCcHHHHHH
Q 008806 268 LCEAVGP--EPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LA-IQHILPCVKEL-SSDSSQHVRSA 338 (553)
Q Consensus 268 l~~~~~~--~~~--~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~-~~~l~~~l~~l-~~d~~~~vr~~ 338 (553)
++..-.. ... ....+|.+++++.+.+++++..|+.+|..++..-+.+ .+ ....+|.+..+ ..+.+..++..
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 9843110 011 1246999999999999999999999999886521222 22 23467888886 56678899999
Q ss_pred HHHHHHhhhhhhCH--HhH--HHhHHHHHHHhhCCCCh----HHHHHHHHHHHHhhhh--hchhh----HHhhHHHHHHH
Q 008806 339 LASVIMGMAPLLGK--DAT--IEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQV--IGIDL----LSQSLLPAIVE 404 (553)
Q Consensus 339 ~~~~l~~l~~~~~~--~~~--~~~l~p~l~~~l~d~~~----~VR~~a~~~l~~~~~~--~~~~~----~~~~ll~~l~~ 404 (553)
++.++..++..... ..+ ....+|.+..++..... ++++.++.+|..+... -+.+. .....+|.|..
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 99999999863211 112 24578999999976544 4899999999888753 12221 22457899999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHhhhChh----hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 405 LAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 405 ~~~d~~~~vR~~~~~~l~~i~~~~~~~----~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
++.+.+..++..++.++..++.. +.+ ......+|.+..++..++..+|+.|+.+|..+....
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999842 111 122346899999999999999999999999998754
No 72
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.36 E-value=1.5e-13 Score=123.12 Aligned_cols=187 Identities=24% Similarity=0.191 Sum_probs=97.3
Q ss_pred HhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHh
Q 008806 92 ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL 171 (553)
Q Consensus 92 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~l 171 (553)
..+++|+++.||..+...+ +. ..+..+.+|+++.||..++..++ . +.+..+
T Consensus 56 ~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~-------~-------~~L~~l 106 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSAL 106 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGGT
T ss_pred HHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCC-------H-------HHHHHH
Confidence 4455677777777666532 21 12344556666666666665421 1 234455
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcC
Q 008806 172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ 251 (553)
Q Consensus 172 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~ 251 (553)
++|+++.||..++..+ +. +.+..+++|+++.||..++..+ +. +.+..+.+
T Consensus 107 l~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~~ 156 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFMR 156 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTTT
T ss_pred HcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHHc
Confidence 6666666666666532 11 1123345666666666665521 11 12344556
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCC
Q 008806 252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 331 (553)
Q Consensus 252 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~ 331 (553)
|++|.||..++..+ + . +.+..+++|+++.||.+++..+ + .+.+..+++|+
T Consensus 157 D~d~~VR~~aa~~l-------~-----~---~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D~ 206 (244)
T 1lrv_A 157 DEDRQVRKLVAKRL-------P-----E---ESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHDP 206 (244)
T ss_dssp CSCHHHHHHHHHHS-------C-----G---GGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGCS
T ss_pred CCCHHHHHHHHHcC-------C-----H---HHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCC
Confidence 66666666665531 1 1 2333555666666666666542 1 13344556666
Q ss_pred cHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHH
Q 008806 332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (553)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~ 383 (553)
+|.||..++..++ .+.+..+ +|+++.||..+..+|+
T Consensus 207 d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 207 DWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 6666666665532 1333344 6666666666655443
No 73
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.32 E-value=4e-09 Score=108.24 Aligned_cols=359 Identities=13% Similarity=0.067 Sum_probs=228.5
Q ss_pred HHHHHHHHhc-CCCcchhhhHhhhhHhhcCCCC--hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc-hhhhh
Q 008806 126 YIPLVKRLAA-GEWFTARVSACGLFHIAYPSAP--DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKT 201 (553)
Q Consensus 126 ~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~--~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~~ 201 (553)
+.|.+.+... .++.....++++++...+..-. ....+...+.+.+++++ ..+|..++-.|..+...-+. +....
T Consensus 256 ~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~ 333 (778)
T 3opb_A 256 LSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLK 333 (778)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHH
Confidence 3455544443 3334455666666665543211 11345566777777765 46787777777777654332 22345
Q ss_pred hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc-hh--hhchHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCC--
Q 008806 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-DC--VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE-- 275 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~--~~~ll~~l~~l~~d-~~~~vR~~~~~~l~~l~~~~~~~-- 275 (553)
.+.+.+.+.+.+++...|..|++.|..+...-... .+ .+.++..+.+++++ .+..+-+.++..|.++.......
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 67888888888766666899999999886432111 11 12245555555553 44456677777777665532210
Q ss_pred -----------------------c----------------cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--
Q 008806 276 -----------------------P----------------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-- 314 (553)
Q Consensus 276 -----------------------~----------------~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~-- 314 (553)
. ....++|.+..+++.+++.+|..|+++|..++..-...
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~ 493 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ 493 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0 01247899999999999999999999999997642111
Q ss_pred HHHHhHHHHHHHhccCCcHH---HHHHHHHHHHhhhhhhCHHhHH-----HhHHHHHHHhhCC-CCh-------------
Q 008806 315 LAIQHILPCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATI-----EQLLPIFLSLLKD-EFP------------- 372 (553)
Q Consensus 315 ~~~~~l~~~l~~l~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~p~l~~~l~d-~~~------------- 372 (553)
-..+..++.+..++.+.... +|..++.++..+.....+.... ...+|.+..+|.. +..
T Consensus 494 lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~ 573 (778)
T 3opb_A 494 LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL 573 (778)
T ss_dssp HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence 22345667777777665443 8999999999987544333211 1467888888872 221
Q ss_pred HHHHHHHHHHHHhhhhhch---h----hHH-hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh---hhhH---HH--
Q 008806 373 DVRLNIISKLDQVNQVIGI---D----LLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFD---DK-- 436 (553)
Q Consensus 373 ~VR~~a~~~l~~~~~~~~~---~----~~~-~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---~~~~---~~-- 436 (553)
--+..|+.+|..++..-++ + .+. ...+|.|..++.+++..+|.++++++..++..-.. +++. +.
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~ 653 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSL 653 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhh
Confidence 1267788898888875421 1 233 25889999999999999999999999999964431 2221 11
Q ss_pred -HHHHHHHHccCCchHHHHHHHHHHHHHHHHhCh--hHH-h-hhhhhhhhhhhhh
Q 008806 437 -LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWA-M-QHITPQKSHVLDC 486 (553)
Q Consensus 437 -l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~--~~~-~-~~i~p~l~~~l~~ 486 (553)
-++.++.++...+..+|.+|+.+++.+...... +.. . ...+..+..++++
T Consensus 654 ~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 654 RNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhc
Confidence 377888999999999999999999998654332 111 1 2355566666665
No 74
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.31 E-value=6e-10 Score=109.96 Aligned_cols=243 Identities=10% Similarity=0.035 Sum_probs=168.3
Q ss_pred hHhhhhHhhcCCCChHHHH-----HHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHhhhCc--hhh--hhhH
Q 008806 144 SACGLFHIAYPSAPDILKT-----ELRSIYTQLCQ-----------DDMPMVRRSAASNLGKFAATVEP--AHL--KTDI 203 (553)
Q Consensus 144 ~~~~~l~~l~~~~~~~~~~-----~l~~~l~~ll~-----------d~~~~Vr~~a~~~l~~l~~~~~~--~~~--~~~l 203 (553)
.|+.+++.++.. ++.++ ..++.+..++. +.++.+++.++.+|..++..-++ ..+ ....
T Consensus 167 qAv~aL~nls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 555666666433 33222 24555666552 13577999999999999964321 122 2456
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc---hh-hhchHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhC---CC
Q 008806 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DC-VAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVG---PE 275 (553)
Q Consensus 204 ~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~-~~~ll~~l~~l-~~d~~~~vR~~~~~~l~~l~~~~~---~~ 275 (553)
+|.+..++.+++.+++..|+.+|..++..-+.+ .. ....+|.+.++ ....+..++..++.+|.+++.... ..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 899999999999999999999999997632211 11 22367777775 566788999999999999886321 11
Q ss_pred cc-ccchHHHHHHhcCCCcH----HHHHHHHHHHHHHHHh--hCHHH---H-HHhHHHHHHHhccCCcHHHHHHHHHHHH
Q 008806 276 PT-RMDLVPAYVRLLRDNEA----EVRIAAAGKVTKFCRI--LNPEL---A-IQHILPCVKELSSDSSQHVRSALASVIM 344 (553)
Q Consensus 276 ~~-~~~llp~l~~ll~d~~~----~vr~~a~~~l~~~~~~--~~~~~---~-~~~l~~~l~~l~~d~~~~vr~~~~~~l~ 344 (553)
.. ....+|.+.+++.+... +++..|+.+|..++.. -+++. + ....+|.+..++.+.+..++..++.++.
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 11 34589999999986543 5888898888888763 22221 1 2346788899999999999999999999
Q ss_pred hhhhhhCH---HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhh
Q 008806 345 GMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (553)
Q Consensus 345 ~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~ 388 (553)
.++..-.. .....-.+|.+..+++..+..+|+.|+.+|..+...
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99742111 112345678888888888888999999888888764
No 75
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.31 E-value=1.3e-10 Score=103.51 Aligned_cols=187 Identities=15% Similarity=0.119 Sum_probs=141.1
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH---
Q 008806 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--- 352 (553)
Q Consensus 279 ~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--- 352 (553)
+...|.+..+++++++++|..|+.+|..++..-... -.....+|.+..++.++++.+|..++.+++.++..-..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 457788889999999999999999998887432111 12235788888999999999999999999998743221
Q ss_pred HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh---hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhC
Q 008806 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (553)
Q Consensus 353 ~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~ 429 (553)
.......+|.+..+++++++.+|..++.+|..++..-... ......+|.|..++.+++..+|..++.++..++....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 1123456889999999999999999999999998532211 1235678999999999999999999999999986421
Q ss_pred hh---hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 430 VG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 430 ~~---~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
.. ......++.+..++.+++..||..|+.+|+.+++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 11 1223478889999999999999999999988753
No 76
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.28 E-value=1.9e-09 Score=114.47 Aligned_cols=281 Identities=12% Similarity=0.153 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHh-hcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCCh----H-HHHHHHHHHHHhcCCCC
Q 008806 103 RDKAVESLCRIGS-QMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD----I-LKTELRSIYTQLCQDDM 176 (553)
Q Consensus 103 R~~a~~~l~~l~~-~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~----~-~~~~l~~~l~~ll~d~~ 176 (553)
+..+...+..+.. ..........++..+.+...++... +.|+..++.++...+. + +.-.+++.+...+.|+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 3444445555443 2222222234677777777776444 7888888888866533 2 44456899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCC-ChhHHHHHHHHHHHhhccCCcc--hhhhchHHHHHHhcCCC
Q 008806 177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDK 253 (553)
Q Consensus 177 ~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~ 253 (553)
..||.++..+...++..+++... ..++|.+...+.+. .|..+.+|+.++..+++..+.. ...+.++|.+.....|.
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 187 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT 187 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence 99999999999999999998766 78888888777654 6999999999999999866332 34677999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHH--HHhhCHHHHHHhHHHHHHHhccCC
Q 008806 254 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF--CRILNPELAIQHILPCVKELSSDS 331 (553)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~--~~~~~~~~~~~~l~~~l~~l~~d~ 331 (553)
.+.|..++..++..+|..+++... ...+|.+++.+.+++ +|.. ++..|+.. ...+.. ..+..+.|.+.+.+.++
T Consensus 188 k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~-~~~~-~~~~l~~~tfv~~v~~-~~l~~~~p~l~r~l~~~ 263 (986)
T 2iw3_A 188 KKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPT-EVPE-TVHLLGATTFVAEVTP-ATLSIMVPLLSRGLNER 263 (986)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTT-HHHH-HHHHHTTCCCCSCCCH-HHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChh-hhHH-HHHHhhcCeeEeeecc-hhHHHHHHHHHhhhccC
Confidence 999999999999999998887664 678999999999885 3433 44544421 111121 23578999999999999
Q ss_pred cHHHHHHHHHHHHhhhhhhCHHhH----HHhHHHHHHHhhC-CCChHHHHHHHHHHHHhhhhhc
Q 008806 332 SQHVRSALASVIMGMAPLLGKDAT----IEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIG 390 (553)
Q Consensus 332 ~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~ 390 (553)
...+++.++-.+..+++....... .+.++|-+.+... -.+|++|+.+-+++..+...-+
T Consensus 264 ~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 264 ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 988889999999999998876544 4445555555443 3579999999999988866543
No 77
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.25 E-value=2.2e-10 Score=102.09 Aligned_cols=186 Identities=13% Similarity=0.086 Sum_probs=130.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc--
Q 008806 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-- 236 (553)
Q Consensus 162 ~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 236 (553)
....+.+..+++++++.+|..++.+|+.++..-+. .......+|.+.+++.++++.+|..|+.+++.++..-+..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34567788888999999999999999998853221 1123357888888999999999999999999987532211
Q ss_pred -hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC
Q 008806 237 -DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 312 (553)
Q Consensus 237 -~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~ 312 (553)
......+|.+..++++.++.+|..++.+|++++..... .......+|.++++++++++.+|..|+.+|..++..-.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 12234788888888888999999999999888742110 01123578888888888888888888888888776311
Q ss_pred HH---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhh
Q 008806 313 PE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347 (553)
Q Consensus 313 ~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~ 347 (553)
.. -.....++.+..++.+++..+|..++.++..++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 11 112245666677777777777777777776665
No 78
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.21 E-value=4.4e-08 Score=109.52 Aligned_cols=456 Identities=10% Similarity=0.005 Sum_probs=261.7
Q ss_pred CCcCcHHHHHHHhcCc--cHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccc----cC
Q 008806 6 EPLYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VG 79 (553)
Q Consensus 6 ~~~~~i~~ll~~L~~~--d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~----~~ 79 (553)
+++..+..++..+.++ |+..|..|.+.|..+-+. |+ .+..+...+. ..+.++.+|..++..|.+.+.. ++
T Consensus 8 ~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~-~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 8 ALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP-ICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT-THHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch-HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 4666787888777766 778899999998887432 11 2333333232 2455789999999999877642 22
Q ss_pred Ccc---hhhcchhHHHhhhc---cchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhc
Q 008806 80 GVE---HAHVLLPPLETLCT---VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY 153 (553)
Q Consensus 80 ~~~---~~~~l~~~l~~l~~---~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 153 (553)
.+. ....++..+..... +++..+|.....++..+++.--+ ..++.+++.+.++.+. +...+..+..++..+.
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLA 161 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 211 22234443332211 14688999999999998876433 3466778888777765 3345666777666553
Q ss_pred CC------CChH-----------HHHHHHHHHHHhcCC-------------------CCHHHHHHHHHHHHHHHhhhCch
Q 008806 154 PS------APDI-----------LKTELRSIYTQLCQD-------------------DMPMVRRSAASNLGKFAATVEPA 197 (553)
Q Consensus 154 ~~------~~~~-----------~~~~l~~~l~~ll~d-------------------~~~~Vr~~a~~~l~~l~~~~~~~ 197 (553)
+- .... ...++++.+.+++++ .+..++..+.+++..+....+..
T Consensus 162 Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~ 241 (1204)
T 3a6p_A 162 EDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMS 241 (1204)
T ss_dssp HHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHH
Confidence 21 1111 112455555555543 23456677777777666555533
Q ss_pred hhhh---hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC-cch---hhhchHH----HHHHhc--------CCCCHHHH
Q 008806 198 HLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-PQD---CVAHILP----VIVNFS--------QDKSWRVR 258 (553)
Q Consensus 198 ~~~~---~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~~---~~~~ll~----~l~~l~--------~d~~~~vR 258 (553)
.+.+ .+++.+..++.+ +.+|.+|++++..++.... .+. ....+.+ .+.... .|.+..++
T Consensus 242 ~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~ 319 (1204)
T 3a6p_A 242 HITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFL 319 (1204)
T ss_dssp HHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHH
T ss_pred HHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHH
Confidence 3322 377777766664 6789999999999987532 221 1111111 122221 22345566
Q ss_pred HHHHHHHHHHHHHhC----------CCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--H-H---HHHHhHHH
Q 008806 259 YMVANQLYELCEAVG----------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--P-E---LAIQHILP 322 (553)
Q Consensus 259 ~~~~~~l~~l~~~~~----------~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~--~-~---~~~~~l~~ 322 (553)
+.+++.+..++..+- .......+++.+.+++.+++..+-..++.....+.+... . + .+...+++
T Consensus 320 k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~ 399 (1204)
T 3a6p_A 320 KRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLR 399 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 666666665553211 111124688999999998888887777766665555421 1 1 22334444
Q ss_pred HHHH---hc---cCC---------------------cHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCC-----
Q 008806 323 CVKE---LS---SDS---------------------SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE----- 370 (553)
Q Consensus 323 ~l~~---l~---~d~---------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~----- 370 (553)
.+.. -+ .+. -+..|......+..++...+.. ....+.+.+...+.+.
T Consensus 400 vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~-~l~~v~~~l~~~l~~~l~~~~ 478 (1204)
T 3a6p_A 400 ASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT-SFQMAGEWLKYQLSTFLDAGS 478 (1204)
T ss_dssp HHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHTCC-----
T ss_pred HHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHhhhhcccc
Confidence 4411 01 100 1345777777776666544332 3444555554443321
Q ss_pred --------------------ChHHHHHHHHHHHHhhhhh---c-hhhHHhhHHHHHHHhh---cCCCcHHHHHHHHHHHH
Q 008806 371 --------------------FPDVRLNIISKLDQVNQVI---G-IDLLSQSLLPAIVELA---EDRHWRVRLAIIEYIPL 423 (553)
Q Consensus 371 --------------------~~~VR~~a~~~l~~~~~~~---~-~~~~~~~ll~~l~~~~---~d~~~~vR~~~~~~l~~ 423 (553)
.....++....++.+...+ . .+.....+.|.+...+ +..++.+|...+.+++.
T Consensus 479 ~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~ 558 (1204)
T 3a6p_A 479 VNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSA 558 (1204)
T ss_dssp ------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 1123455555555554433 1 1111112445454442 34578899999999998
Q ss_pred HHhhhChh-hhHHHHHHHHHHHccC------------CchHHHHHHHHHHHHHHHHhChh
Q 008806 424 LASQLGVG-FFDDKLGALCMQWLQD------------KVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 424 i~~~~~~~-~~~~~l~~~l~~~l~D------------~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
+...+... .+.+.+++.++..+.+ .+.+||.+|+.++..+++.++..
T Consensus 559 l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~ 618 (1204)
T 3a6p_A 559 LFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQL 618 (1204)
T ss_dssp HGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 88876532 3556677777766666 34589999999999999987654
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.16 E-value=6.6e-09 Score=110.34 Aligned_cols=237 Identities=13% Similarity=0.186 Sum_probs=183.0
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc----cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 315 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~----~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~ 315 (553)
..+...+.+.+.|+... .+++..++.++...+..... -.++|.++..+.|....||.+|-.+...+...++++.
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 35777888888887554 88888888888766543211 1367888899999999999999999999999999887
Q ss_pred HHHhHHHHHHHhccCC-cHHHHHHHHHHHHhhhhhhCHHh--HHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh
Q 008806 316 AIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (553)
Q Consensus 316 ~~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 392 (553)
. ..++|.+...+.+. .|+.+.+++.++..+++...... ....++|.+..++.|..++|..+|..++..+|..+++.
T Consensus 131 ~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~ 209 (986)
T 2iw3_A 131 I-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 209 (986)
T ss_dssp H-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT
T ss_pred H-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc
Confidence 5 78889988877654 69999999999999997653322 25789999999999999999999999999999999987
Q ss_pred hHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh----hhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 393 ~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
.+ ...+|.|.+.+.+++. .-+++..++..-=. ..-..-++|.+.+.|.++...++..++-.+..|++-..
T Consensus 210 d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 210 DI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp TT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred ch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence 76 6789999999988853 33444444432100 11234588999999999999999999999999999876
Q ss_pred hhHHhhhhhhhhhhhhh
Q 008806 469 PEWAMQHITPQKSHVLD 485 (553)
Q Consensus 469 ~~~~~~~i~p~l~~~l~ 485 (553)
.......++|.|...++
T Consensus 284 ~~~~~~~f~~~l~p~~~ 300 (986)
T 2iw3_A 284 DPQVIAPFLGKLLPGLK 300 (986)
T ss_dssp CHHHHHHHHTTTHHHHH
T ss_pred CHHHHhhhhhhhhhHHH
Confidence 54443445555554443
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.08 E-value=1.2e-07 Score=77.36 Aligned_cols=214 Identities=17% Similarity=0.184 Sum_probs=131.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHh-hhCCChhHHHHHHHHHHHhhccCCcchhhh
Q 008806 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL-TQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (553)
Q Consensus 162 ~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (553)
..++..+..++.|+-|.|++.+...+..+++..++ ..+.+...+..+ -+++.-..-.....++|.++..-+. ...
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVK 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHH
Confidence 56778888889999999999999888888876542 222222222222 3455555556666777777754222 234
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhH
Q 008806 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320 (553)
Q Consensus 241 ~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l 320 (553)
...|.+.....-.+++.|-....+|+.++...+.- ...+..-+..++.+++..-|.+|+..++.++.. +..+ ..-.
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~y-v~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKY-VNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THHH-HGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Cccc-cCcc
Confidence 56777777666667778888888888887651100 012333344566777766677777666654432 1222 3445
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhh
Q 008806 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (553)
Q Consensus 321 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~ 386 (553)
+|.+..++.|.+.-||.++...+.+++..-++ ...++.--.+-++|.+..|....-..|+.+.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 67777777888888888888888887753222 2223333344556777777776666666654
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.07 E-value=1.5e-08 Score=91.07 Aligned_cols=179 Identities=14% Similarity=0.179 Sum_probs=133.8
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH---HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh------HH
Q 008806 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAI---QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA------TI 356 (553)
Q Consensus 286 ~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~------~~ 356 (553)
...+-+.++.-|.+++..|....+.. ++... +.+++-+.-.+.|+|..|-..++..+..+...++... ..
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~-~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea 130 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTS-PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV 130 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHC-HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 33444456666666766666554432 22221 1123322222347899998899998888877665421 13
Q ss_pred HhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHH
Q 008806 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 436 (553)
Q Consensus 357 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~ 436 (553)
..++|.+..-+.|....||+.+-..+..+...+++ ..+.+.+.+.+.+.||++|..++..++.+....|... ..
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~ 204 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LK 204 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cc
Confidence 67899999999999999999999999888876654 3467777788899999999999999999999888763 33
Q ss_pred HH---HHHHHHccCCchHHHHHHHHHHHHHHHHhChhH
Q 008806 437 LG---ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (553)
Q Consensus 437 l~---~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~ 471 (553)
.+ |.+..++.|++.+||.+|+.++..+....|+..
T Consensus 205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 56 889999999999999999999999999999763
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.07 E-value=3.8e-09 Score=99.70 Aligned_cols=293 Identities=14% Similarity=0.043 Sum_probs=167.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccC
Q 008806 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233 (553)
Q Consensus 154 ~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 233 (553)
..++......++..+.+++..++...|+...-.+..+++. . ++.. .+...+.+-++|+++.+|-.|+.+++.+..
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-- 133 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD-- 133 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence 3455555667788888899999999999988888887776 3 3333 667788888999999999999999998864
Q ss_pred CcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 008806 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313 (553)
Q Consensus 234 ~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~ 313 (553)
....+.+.+.+.+.+.|+++.||..++-+..++....+ +. .+.+++.+.+++.|.++-|..+|+..+..+... +.
T Consensus 134 --~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~ 208 (355)
T 3tjz_B 134 --STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DV-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DR 208 (355)
T ss_dssp --TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CH
T ss_pred --HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-ch
Confidence 24567789999999999999999999988777754321 11 245788888999999999998888888777653 22
Q ss_pred HHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh
Q 008806 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (553)
Q Consensus 314 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~ 393 (553)
. ....+++.+... .-.++......++.+..+++.-. ......+.+.+..+++..++.|-..|++++-.+.. .+...
T Consensus 209 ~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d~-~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~ 284 (355)
T 3tjz_B 209 L-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDED-GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE 284 (355)
T ss_dssp H-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred H-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH
Confidence 2 234455544331 11234444445666655554210 12346788889999999999999999998877654 22221
Q ss_pred HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 008806 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 463 (553)
Q Consensus 394 ~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l 463 (553)
. ....+.+..++.+++..+|..++..+..++..-+.. ....-..+..+++|++..++.-|+.+|-+.
T Consensus 285 ~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 285 L-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred H-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence 1 233455667778888899999999998887543221 223445667889999999999888877543
No 83
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.07 E-value=3.1e-09 Score=102.12 Aligned_cols=255 Identities=12% Similarity=0.088 Sum_probs=179.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchH
Q 008806 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 243 (553)
Q Consensus 164 l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 243 (553)
+...+..-+-|+.|++|..|+-+|.++.+..+...-.. -..+.+-.+|..++-++..++...+....
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDqVV----- 241 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDRTV----- 241 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSSCB-----
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCeee-----
Confidence 66667777889999999999999999998776311111 11223566777777777777766554332
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHH
Q 008806 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 323 (553)
Q Consensus 244 ~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~ 323 (553)
..||+.++++||.+ ..++.+ ..++-.++..+..+.|+||.+++-.|..+...+.. .+.++|.
T Consensus 242 -----------APVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 242 -----------APVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp -----------CHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred -----------eehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 35999999999999 777665 34555555666788899999999999887443332 5788899
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCC--CChHHHHHHHHHHHHhhhhhchhhHHhhHHHH
Q 008806 324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (553)
Q Consensus 324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d--~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~ 401 (553)
+...++|++..||..++.++..++ .++ ..+.++..++.+|.+ +-..--...+..|..++..-......+.++|.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA---~p~-~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFP---ITD-SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSC---CSS-THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhc---chh-hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 999999999999999999999988 222 245566666666643 22233344555566665532211122478888
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHH-HHccCCchHHHHHHHHHHH
Q 008806 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM-QWLQDKVYSIRDAAANNLK 461 (553)
Q Consensus 402 l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~-~~l~D~~~~VR~~a~~~l~ 461 (553)
|..++.++-..||.+++.++..+. ...++..+. .++-++..+|+..+.+++.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 888999999999999999887665 223444443 4677899999999999885
No 84
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.06 E-value=6.2e-07 Score=97.41 Aligned_cols=459 Identities=10% Similarity=0.023 Sum_probs=260.2
Q ss_pred cHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCC--------c----------ch
Q 008806 22 DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG--------V----------EH 83 (553)
Q Consensus 22 d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~--------~----------~~ 83 (553)
++.++.+.+..++.++++.-|+. |+.+++-+.+....++.........|..+.+.+.+ . ..
T Consensus 125 ~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~ 203 (1073)
T 3gjx_A 125 EKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE 203 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 46778888889999988876654 77777777662222344444444555444432211 0 11
Q ss_pred hhcchhHHHhhh-ccchhHHHHHHHHHHHHHHhhcChhhh-hhhHHHHH-HHHhcCCCcchhhhHhhhhHhhcCCCChHH
Q 008806 84 AHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMRESDL-VDWYIPLV-KRLAAGEWFTARVSACGLFHIAYPSAPDIL 160 (553)
Q Consensus 84 ~~~l~~~l~~l~-~~~~~~vR~~a~~~l~~l~~~~~~~~~-~~~~l~~l-~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 160 (553)
...+++++...+ ...++.+...++++++.+.+-++-..+ ...+++.+ ..+++ ++..|..|++++..+...-.+++
T Consensus 204 ~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~ 281 (1073)
T 3gjx_A 204 FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQY 281 (1073)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGG
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccch
Confidence 234555555443 345677778888999998887765543 34477766 45554 45689999999988775422232
Q ss_pred HHHHHHHH-------HHhc-------------CCCCHHHHHHHHHHHHHHHhhhCc-----hh---hhhhHHHHHHHhhh
Q 008806 161 KTELRSIY-------TQLC-------------QDDMPMVRRSAASNLGKFAATVEP-----AH---LKTDIMSIFEDLTQ 212 (553)
Q Consensus 161 ~~~l~~~l-------~~ll-------------~d~~~~Vr~~a~~~l~~l~~~~~~-----~~---~~~~l~p~l~~~~~ 212 (553)
.+.+...+ .+++ .+.+.+.-+..+..+..+++.... +. .....+.++.....
T Consensus 282 ~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~ 361 (1073)
T 3gjx_A 282 EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE 361 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC
Confidence 22222222 2222 222333334444444444432211 11 11223344555666
Q ss_pred CCChhHHHHHHHHHHHhhccCCcc--------------------hhhhchHHHHHH-------hcC--------------
Q 008806 213 DDQDSVRLLAVEGCAALGKLLEPQ--------------------DCVAHILPVIVN-------FSQ-------------- 251 (553)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~~~--------------------~~~~~ll~~l~~-------l~~-------------- 251 (553)
.++.++-..+++.+..+...+-.+ .......|.+.+ .+.
T Consensus 362 ~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge 441 (1073)
T 3gjx_A 362 VEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGE 441 (1073)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccch
Confidence 788888888888877776542100 011112222221 111
Q ss_pred -------CCCH-HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC--CcHHHHHHHHHHHHHHHHhhCHH---HHHH
Q 008806 252 -------DKSW-RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVTKFCRILNPE---LAIQ 318 (553)
Q Consensus 252 -------d~~~-~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d--~~~~vr~~a~~~l~~~~~~~~~~---~~~~ 318 (553)
|.+. ..+...-.++..+. .++.+.....+.+.+.+.+.. .+|..+.+++.+++.++..+.++ .+..
T Consensus 442 ~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 442 VVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 1100 12223333343333 223222223345555544443 34899999999999997666542 5567
Q ss_pred hHHHHHHHhccCC-----cHHHHHHHHHHHHhhhhhhCHH-hHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh
Q 008806 319 HILPCVKELSSDS-----SQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (553)
Q Consensus 319 ~l~~~l~~l~~d~-----~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 392 (553)
.+++.+..+.+.+ ...++..++..+++..+.+... .+.+.++..+.+.+.|+++.|+.+|+.++..+++..+..
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776543 3456777778899888776432 235566677778888999999999999999998876543
Q ss_pred h----------HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhh----HHHHHHHHHH--------------H
Q 008806 393 L----------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQ--------------W 444 (553)
Q Consensus 393 ~----------~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~----~~~l~~~l~~--------------~ 444 (553)
. +.+.++..+.....+-...-.....++++.++...+.+.. ...+++.... .
T Consensus 601 lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~ 680 (1073)
T 3gjx_A 601 FVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDI 680 (1073)
T ss_dssp GTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGG
T ss_pred HhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Confidence 2 2244455555555555677778889999999998876532 2233332221 1
Q ss_pred ccCCch-HHHHHHHHHHHHHHHHhChhHHh--hhhhhhhhhhh
Q 008806 445 LQDKVY-SIRDAAANNLKRLAEEFGPEWAM--QHITPQKSHVL 484 (553)
Q Consensus 445 l~D~~~-~VR~~a~~~l~~l~~~~~~~~~~--~~i~p~l~~~l 484 (553)
+.|++. .--...+++...++...|..+.. ..+.|.+.++.
T Consensus 681 ~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y 723 (1073)
T 3gjx_A 681 LKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVY 723 (1073)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 223321 11233456666778888876653 44666555544
No 85
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.06 E-value=1.1e-08 Score=97.93 Aligned_cols=217 Identities=11% Similarity=0.052 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHHHHHHhC-C-Ccc--ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HH-HHhHHHHHH
Q 008806 254 SWRVRYMVANQLYELCEAVG-P-EPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LA-IQHILPCVK 325 (553)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~-~-~~~--~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~-~~~l~~~l~ 325 (553)
+..++..++.+|..++..-. . ... ....+|.+++++.+++++++..|+.+|..++..-+.+ .+ ....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 35677777788877763210 0 001 1236999999999999999999999999987531222 22 234678888
Q ss_pred Hh-ccCCcHHHHHHHHHHHHhhhhhhCH--HhH--HHhHHHHHHHhhCCCCh----HHHHHHHHHHHHhhhhh--chhh-
Q 008806 326 EL-SSDSSQHVRSALASVIMGMAPLLGK--DAT--IEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVI--GIDL- 393 (553)
Q Consensus 326 ~l-~~d~~~~vr~~~~~~l~~l~~~~~~--~~~--~~~l~p~l~~~l~d~~~----~VR~~a~~~l~~~~~~~--~~~~- 393 (553)
++ ..+.+..+++.++.++..++..... ..+ ....+|.+.+++.+.+. ++++.++.+|..+...+ +.+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 85 5667889999999999998863221 122 24678999999976554 58999999988887531 2221
Q ss_pred ---HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh--h-hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 008806 394 ---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--G-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 394 ---~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~--~-~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
.....+|.|..++.+.+..++..++.++..++..-.. . ......+|.+..++.+++..+|+.|+.+|..+....
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 2245789999999999999999999999999742111 1 122346899999999999999999999999999875
Q ss_pred Chh
Q 008806 468 GPE 470 (553)
Q Consensus 468 ~~~ 470 (553)
+..
T Consensus 337 ~~~ 339 (354)
T 3nmw_A 337 PAK 339 (354)
T ss_dssp CGG
T ss_pred HHH
Confidence 433
No 86
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.04 E-value=1.4e-08 Score=91.16 Aligned_cols=175 Identities=12% Similarity=0.083 Sum_probs=134.6
Q ss_pred hcCCCcchhhhHhhhhHhhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCch------hhhhhHH
Q 008806 134 AAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA------HLKTDIM 204 (553)
Q Consensus 134 ~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~------~~~~~l~ 204 (553)
.-++++..|..+++.+....+....+ ..+-+++.+.--+.|+++.|-..+++.+..+...+... .....++
T Consensus 55 lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~l 134 (266)
T 2of3_A 55 LFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134 (266)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 34446666776766665544332222 12234554444456889999999999999987766432 2235789
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH--
Q 008806 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV-- 282 (553)
Q Consensus 205 p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ll-- 282 (553)
|.+.+-+.|..+.||..+-..+..+...+++ +.+.+.+.+.+.+++|++|..++..++.+....|.. ....+
T Consensus 135 P~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~ 208 (266)
T 2of3_A 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSV 208 (266)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccc
Confidence 9999999999999999999998888776555 346777777889999999999999999999999876 34567
Q ss_pred -HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 008806 283 -PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 314 (553)
Q Consensus 283 -p~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~ 314 (553)
|.+.+++.|.|..||.+|+.++..+....|..
T Consensus 209 ~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 209 EKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999998888865
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.01 E-value=1.9e-08 Score=96.76 Aligned_cols=254 Identities=13% Similarity=0.010 Sum_probs=175.7
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCcchhhcchhH
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 90 (553)
-..|...|-++.|.+|..|+-+|..+.+..|....+. ...+.+-.+|....-+|.++..++++.-
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDqV-------- 240 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDRT-------- 240 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSSC--------
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCee--------
Confidence 4567788889999999999999999988876533222 2122266788888888888887665521
Q ss_pred HHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHH
Q 008806 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (553)
Q Consensus 91 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ 170 (553)
-..||+.++.+|+.+ .+++++ ..++..+......+.|++|.++.-.+..+...+.. .+.+++.+..
T Consensus 241 --------VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~ 306 (800)
T 3oc3_A 241 --------VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVS 306 (800)
T ss_dssp --------BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHH
T ss_pred --------eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 235899999999999 888776 22333333455778899999988777766333322 6888999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCCh-h-HHHHHHHHHHHhhccCCcchhhhchHHHHHH
Q 008806 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-S-VRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248 (553)
Q Consensus 171 ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~-~-vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 248 (553)
.++|.+.+||..|+.+|..++ . ....+.++..++..+.+.++ . --...+..|..+...-......+.++|.+..
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---~-p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~P 382 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---I-TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFP 382 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---C-SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGG
T ss_pred hcCCcccHHHHHHHHHhhhhc---c-hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHh
Confidence 999999999999999999888 2 23456667777766665432 1 1233345556555442221222367788888
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH-HHHHhcCCCcHHHHHHHHHHHH
Q 008806 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP-AYVRLLRDNEAEVRIAAAGKVT 305 (553)
Q Consensus 249 l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp-~l~~ll~d~~~~vr~~a~~~l~ 305 (553)
.+......||.++.+++..+. ...+++ ++.+++-+++.+|+..+.+...
T Consensus 383 FLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 888889999999999987665 223444 4455667888899998887764
No 88
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.00 E-value=4.8e-07 Score=73.84 Aligned_cols=215 Identities=14% Similarity=0.223 Sum_probs=141.2
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Q 008806 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQ 318 (553)
Q Consensus 240 ~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 318 (553)
..++..+..+++|.-|.|+..+...+..+++..++- ...++.-++-++ +++.-..-++...++|.++.. .++. ..
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el--~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~-v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL--YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPEL-VK 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHH-HH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH--HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHH-HH
Confidence 346666777788888888888888888777653211 112222222332 355445556677777777663 4554 35
Q ss_pred hHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhH
Q 008806 319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (553)
Q Consensus 319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~l 398 (553)
.++|.+..-..-.+++.|.....++..++...+.. ...+..-+..++.+++..-|..++..++.++.. +.... ...
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~yv-~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYV-NPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THHHH-GGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Ccccc-Ccc
Confidence 67777776665567888888888888888654332 344555566777888888888888777766543 11222 456
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 008806 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 399 l~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~ 465 (553)
+|.+..++.|.|.-||..++++++.++..- +. + ..++--.+.-+.|++..|....-++++.+.-
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~n-pk-l-Rkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLN-DK-L-RKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HH-H-HHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HH-H-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 788888888888889999999888887432 22 2 2233334456788888888888888887764
No 89
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.00 E-value=5.7e-06 Score=89.99 Aligned_cols=446 Identities=10% Similarity=0.074 Sum_probs=248.5
Q ss_pred CccHHHHHHHhhhHHHHHHh----hChHH---Hhhhhhhhhhh-cCC-----CcHHHHHHHHHHhhccccccCCcchhhc
Q 008806 20 NDDIQLRLNSIRRLSTIARA----LGEER---TRKELIPFLSE-NND-----DDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (553)
Q Consensus 20 ~~d~~~R~~a~~~l~~i~~~----~~~~~---~~~~ll~~l~~-~~d-----~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 86 (553)
+.++.+|.-|+..|...... +++++ .+..++..+.+ ..+ .++.++...+.++..++...-+ ..|..
T Consensus 72 s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~ 150 (1073)
T 3gjx_A 72 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPT 150 (1073)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccH
Confidence 34566666666666654332 33322 24455555554 222 3467788888999888775322 34555
Q ss_pred chhHHHhhhccchhHHHHHHHHHHHHHHhhcCh---h------------hh---hhhHHHHHHHHhc-CCCcchhhhHhh
Q 008806 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---S------------DL---VDWYIPLVKRLAA-GEWFTARVSACG 147 (553)
Q Consensus 87 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~------------~~---~~~~l~~l~~~~~-~~~~~~r~~~~~ 147 (553)
+++-+..+.+. ++..+...+..|..+.+.+.. . .+ .+.+++++...++ ..+..+...+.+
T Consensus 151 fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~ 229 (1073)
T 3gjx_A 151 FISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLE 229 (1073)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 66655554432 334456677777777665321 0 01 1235555555553 344566667778
Q ss_pred hhHhhcCCCChH--HHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhh---HHHHH----HHhh------
Q 008806 148 LFHIAYPSAPDI--LKTELRSIY-TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTD---IMSIF----EDLT------ 211 (553)
Q Consensus 148 ~l~~l~~~~~~~--~~~~l~~~l-~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~---l~p~l----~~~~------ 211 (553)
.++....-+... ..+.+++.+ ..++. ++.+|.+++++|..++..-. +...+. ++..+ ...+
T Consensus 230 ~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~-~~~~~~~~~lf~~~~~~i~~ilp~~~~l 306 (1073)
T 3gjx_A 230 TLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSV-SQYEEQFETLFTLTMMQLKQMLPLNTNI 306 (1073)
T ss_dssp HHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCS-GGGHHHHHHHHHHHHHHHHHHSCTTSCH
T ss_pred HHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 888777766555 224577766 46664 67899999999999886411 111111 11111 1111
Q ss_pred -------hCCChhHHHHHHHHHHHhhccC----Ccc-hhhhc---hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---
Q 008806 212 -------QDDQDSVRLLAVEGCAALGKLL----EPQ-DCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--- 273 (553)
Q Consensus 212 -------~d~~~~vr~~a~~~l~~l~~~~----~~~-~~~~~---ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~--- 273 (553)
.+++.+.-..-+..+..+++.. ... ..... .+..+..+..-++..+-......-..+...+-
T Consensus 307 ~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~ 386 (1073)
T 3gjx_A 307 RLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRES 386 (1073)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhc
Confidence 1222222222223333333221 000 11112 22233444455566665555555444443321
Q ss_pred C-----C----------c--cccchHHHHHHh-------cC---------------------CCcH-HHHHHHHHHHHHH
Q 008806 274 P-----E----------P--TRMDLVPAYVRL-------LR---------------------DNEA-EVRIAAAGKVTKF 307 (553)
Q Consensus 274 ~-----~----------~--~~~~llp~l~~l-------l~---------------------d~~~-~vr~~a~~~l~~~ 307 (553)
+ . . ......|++.++ +. |.+. ..+...-.++..
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~- 465 (1073)
T 3gjx_A 387 PFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVY- 465 (1073)
T ss_dssp CSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHH-
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHH-
Confidence 0 0 0 001133333322 21 1111 122222233332
Q ss_pred HHhhCHHHHHHhHHHHHHHhcc--CCcHHHHHHHHHHHHhhhhhhCHH---hHHHhHHHHHHHhhCCC-----ChHHHHH
Q 008806 308 CRILNPELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDE-----FPDVRLN 377 (553)
Q Consensus 308 ~~~~~~~~~~~~l~~~l~~l~~--d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~-----~~~VR~~ 377 (553)
...++.+.....+.+.+.+.+. ..+|..+++++.+++.++..+.++ .+...+++.+..+...+ .+-++..
T Consensus 466 lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~ 545 (1073)
T 3gjx_A 466 LTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASN 545 (1073)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHH
Confidence 3345556566677777765544 356999999999999998777643 34556667776666332 2346666
Q ss_pred HHHHHHHhhhhhchhh-HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh----------hHHHHHHHHHHHcc
Q 008806 378 IISKLDQVNQVIGIDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----------FDDKLGALCMQWLQ 446 (553)
Q Consensus 378 a~~~l~~~~~~~~~~~-~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~----------~~~~l~~~l~~~l~ 446 (553)
.+..+|...+.+...+ +.+.++..+.+...+++..++.+|+.++..+...++... +...++..+.....
T Consensus 546 i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~ 625 (1073)
T 3gjx_A 546 IMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIIC 625 (1073)
T ss_dssp HHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHT
T ss_pred HHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH
Confidence 6788888887765432 336777778888889999999999999999998876643 44555555555555
Q ss_pred CCchHHHHHHHHHHHHHHHHhChhH
Q 008806 447 DKVYSIRDAAANNLKRLAEEFGPEW 471 (553)
Q Consensus 447 D~~~~VR~~a~~~l~~l~~~~~~~~ 471 (553)
+=.+.-.....+++|.++...+++.
T Consensus 626 ~l~~~~~~~lyeav~~vi~~~p~~~ 650 (1073)
T 3gjx_A 626 DLQPQQVHTFYEAVGYMIGAQTDQT 650 (1073)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCCCcc
Confidence 6566667778889999998888654
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.98 E-value=6.1e-08 Score=82.79 Aligned_cols=213 Identities=13% Similarity=0.063 Sum_probs=166.1
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhHHHHHHHhccC
Q 008806 254 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSD 330 (553)
Q Consensus 254 ~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~l~~d 330 (553)
+|++|.+.-.+ .. .+..+..+..++.|.|+.++..++..++.+.+..+.. ...+.++|.+..++.+
T Consensus 18 sWkiK~a~ela-----~~------~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~ 86 (265)
T 3b2a_A 18 SWQILDAVSLA-----LE------DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ 86 (265)
T ss_dssp TTCHHHHHHHH-----HH------CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS
T ss_pred HhhHHHHHHHH-----Hh------chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 68888755222 11 3457888999999999999999999999999875432 3357889999999999
Q ss_pred CcHHHHHHHHHHHHhhhhhhCH-HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCC
Q 008806 331 SSQHVRSALASVIMGMAPLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 409 (553)
Q Consensus 331 ~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~ 409 (553)
++.+|--.+++++..+....+- +.....+...+...+++++.-.+..++..++.+ +.. .....+...+.+++.++
T Consensus 87 ~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~---~~~~~V~~~l~sLl~Sk 162 (265)
T 3b2a_A 87 ENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL---EDSKLVRTYINELVVSP 162 (265)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS---CCCHHHHHHHHHHHTCS
T ss_pred cchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc---cchHHHHHHHHHHHhCC
Confidence 9999999999999999876542 223566788889999999999999999999988 322 22367888889999999
Q ss_pred CcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhHHhhhhhhhhhhhhh
Q 008806 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQKSHVLD 485 (553)
Q Consensus 410 ~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~l~~~l~ 485 (553)
|.+++.+++.++..++...+.......++.-+-.+++.+++.++..|+.++..+...- ..+.+++.+..++.
T Consensus 163 d~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p----i~~~~~~~~~~~~~ 234 (265)
T 3b2a_A 163 DLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP----LLENVKIELLKISR 234 (265)
T ss_dssp SHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC----CCSCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc----ccHhHHHHHHHHHH
Confidence 9999999999999999877665555556666667888899999999999998887641 22455555555543
No 91
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.98 E-value=3.1e-08 Score=94.69 Aligned_cols=213 Identities=11% Similarity=0.022 Sum_probs=152.6
Q ss_pred CcchhhhHhhhhHhhcCCCChH--H---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hh-hhhhHHHHHH
Q 008806 138 WFTARVSACGLFHIAYPSAPDI--L---KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AH-LKTDIMSIFE 208 (553)
Q Consensus 138 ~~~~r~~~~~~l~~l~~~~~~~--~---~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~-~~~~l~p~l~ 208 (553)
+..++..++..+..++..-... . ....+|.+.+++.++++.++..++.+|..++..-.+ +. .....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 3567888888888887543322 1 134689999999999999999999999999864111 11 2234677788
Q ss_pred Hh-hhCCChhHHHHHHHHHHHhhccCCc--chh--hhchHHHHHHhcCCCCH----HHHHHHHHHHHHHHHHh-CCCc--
Q 008806 209 DL-TQDDQDSVRLLAVEGCAALGKLLEP--QDC--VAHILPVIVNFSQDKSW----RVRYMVANQLYELCEAV-GPEP-- 276 (553)
Q Consensus 209 ~~-~~d~~~~vr~~a~~~l~~l~~~~~~--~~~--~~~ll~~l~~l~~d~~~----~vR~~~~~~l~~l~~~~-~~~~-- 276 (553)
++ ....+..++..++.++..++...+. ... ....+|.+.+++.+.+. .++..++.+|..++..+ +.+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 75 5667889999999999998864322 122 24578888888876543 58888899999888632 1111
Q ss_pred ---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---H-HHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh
Q 008806 277 ---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---L-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 277 ---~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---~-~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
.....+|.+++++.+.+..++..|+.+|..++.. +++ . .....+|.+..++.+.+..+|..++.++..++..
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 1234789999999999999999999999988642 122 1 1234678888888888888999999888888865
Q ss_pred hC
Q 008806 350 LG 351 (553)
Q Consensus 350 ~~ 351 (553)
-+
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 33
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.97 E-value=1.6e-08 Score=94.01 Aligned_cols=183 Identities=11% Similarity=0.063 Sum_probs=125.0
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH-------HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHh---
Q 008806 285 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--- 354 (553)
Q Consensus 285 l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~-------~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--- 354 (553)
+.+.+.+.+|..|..|++.+..+......... ...+.+.+...+.|.|..|...++.++..++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 44556666677777777666655543221110 12334556666778888888888887777776554321
Q ss_pred -----HHHhHHHHHHH-hhCCCChHHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh
Q 008806 355 -----TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (553)
Q Consensus 355 -----~~~~l~p~l~~-~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~ 428 (553)
....++|.+.. ++.|....+|..+..++-.++...+.. ..++..+...+++.++.+|..++.++..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 23455666554 588988999999998888877654321 345666777888999999999999999998887
Q ss_pred Chhh-----hHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChh
Q 008806 429 GVGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470 (553)
Q Consensus 429 ~~~~-----~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~ 470 (553)
|... ..+.+++.+..++.|.+.+||.+|..+++.+...+|+.
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 7643 33456677778899999999999999999999999864
No 93
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.96 E-value=3e-08 Score=92.18 Aligned_cols=186 Identities=10% Similarity=0.079 Sum_probs=139.3
Q ss_pred chHHHHHHhcCCCc------------HHHHHHHHHHHHHHHHhhCHHH-H-HHhHHHHHHH-hccCCcHHHHHHHHHHHH
Q 008806 280 DLVPAYVRLLRDNE------------AEVRIAAAGKVTKFCRILNPEL-A-IQHILPCVKE-LSSDSSQHVRSALASVIM 344 (553)
Q Consensus 280 ~llp~l~~ll~d~~------------~~vr~~a~~~l~~~~~~~~~~~-~-~~~l~~~l~~-l~~d~~~~vr~~~~~~l~ 344 (553)
+.++..++.+.|+. .+-|..|+..|..+++..+... + ....+|.+.. ++.+++..+|..++++++
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555555555541 2467778888888777543221 1 2245677888 999999999999999999
Q ss_pred hhhhhhC---HHhHHHhHHHHHHHhhC-CCChHHHHHHHHHHHHhhhhhch--h-hHHhhHHHHHHHhhcCCCcHHHHHH
Q 008806 345 GMAPLLG---KDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAI 417 (553)
Q Consensus 345 ~l~~~~~---~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~vR~~~ 417 (553)
.++..-. ........+|.+..+++ +++..+|..|+.+|..++....+ + ......+|.|..++.+++..+|..+
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 9985322 12223457888899997 55789999999999999864322 1 2335688999999999999999999
Q ss_pred HHHHHHHHhhhChh----hhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 418 IEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 418 ~~~l~~i~~~~~~~----~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
+.+++.++.. +++ .....++|.+..++.+++..||..++.+++.++..
T Consensus 188 ~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 188 AFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999876 222 22345789999999999999999999999999976
No 94
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.95 E-value=9.1e-09 Score=88.99 Aligned_cols=139 Identities=20% Similarity=0.232 Sum_probs=113.4
Q ss_pred hhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 008806 200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (553)
Q Consensus 200 ~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 278 (553)
.+.+++++..+.+++.++||..|+..++.. . ....+++.+.. +..|++|.||..++.+++.++...+.+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 457888888999999999999999988877 2 12558999998 889999999999999999999755543
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh
Q 008806 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 279 ~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
..++.+..++.|++..||..|.....-++.........+.++|.+..+..|++..||.+++..|..+++.
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 4788999999999999999999986443332111222456889999999999999999999999999864
No 95
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.90 E-value=2.5e-10 Score=93.00 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=79.5
Q ss_pred HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhHHhh
Q 008806 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (553)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ 397 (553)
..-.+.+...++|+++.+|..++..++.+.. . . .|.+...++|+++.||..++.+|+.+.. ..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence 3445666677777888888877777766542 1 1 3667777888888888888888777653 33
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 008806 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 462 (553)
Q Consensus 398 ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~ 462 (553)
.++.|...+.|+++.+|..++.+++.+. .+..+|.+..+++|++..||..|+.+|++
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4666777777888888888888887764 13456777777888888888888887764
No 96
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.90 E-value=3.9e-08 Score=92.80 Aligned_cols=307 Identities=12% Similarity=0.039 Sum_probs=164.4
Q ss_pred HHHHHHHHHhhcccc--ccCCcchhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCc
Q 008806 62 EVLLAMAEELGVFIP--YVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWF 139 (553)
Q Consensus 62 ~vr~~~~~~l~~l~~--~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 139 (553)
.+|..+.+.+.-+.. .++. .....+++-..++...+|...|+...-.+..+.+. +++.+ .+...+.+=++++++
T Consensus 43 kc~~~l~kll~l~~~G~~f~~-~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kDl~~~N~ 118 (355)
T 3tjz_B 43 KCAHILTKILYLINQGEHLGT-TEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKDMTGKED 118 (355)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHCCCCCch-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhhcCCCcH
Confidence 345566666654332 1111 11234555556677788889999888888777766 33322 567777787888999
Q ss_pred chhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHH
Q 008806 140 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 219 (553)
Q Consensus 140 ~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr 219 (553)
.+|-.|+..++.+.. ++..+.+.+.+.+.+.|+++.||++|+-+...+....+ +..+..++.+.+++.|.++.|.
T Consensus 119 ~iR~lALRtL~~I~~---~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v~~~~~~l~~ll~d~n~~V~ 193 (355)
T 3tjz_B 119 SYRGPAVRALCQITD---STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVVKRWVNEAQEAASSDNIMVQ 193 (355)
T ss_dssp HHHHHHHHHHHHHCC---TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHTTCSSHHHH
T ss_pred hHHHHHHHHHhcCCC---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHhcCCCccHH
Confidence 999999999988863 45678889999999999999999999999887775443 2345677778888999999999
Q ss_pred HHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHH
Q 008806 220 LLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIA 299 (553)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~ 299 (553)
..|+..+..+.+.- . .....+++.+.+. .-.++.......+.+..++..- .......+++.+..++++.++.|..+
T Consensus 194 ~~Al~lL~ei~~~d-~-~a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyE 269 (355)
T 3tjz_B 194 YHALGLLYHVRKND-R-LAVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYE 269 (355)
T ss_dssp HHHHHHHHHHHTTC-H-HHHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHH
T ss_pred HHHHHHHHHHHhhc-h-HHHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHH
Confidence 88888888876531 1 1122233333221 1113333333444443333221 01223568888888899888999998
Q ss_pred HHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHH
Q 008806 300 AAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII 379 (553)
Q Consensus 300 a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~ 379 (553)
|+.++-.+.. .+.. ........+..++.+++..+|..++..+..+....+.. .+..-.-+..+++|++..++.-|+
T Consensus 270 a~k~I~~l~~-~~~~-~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Ai 345 (355)
T 3tjz_B 270 AASAIVNLPG-CSAK-ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAI 345 (355)
T ss_dssp HHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------------------
T ss_pred HHHHHHhccC-CCHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHH
Confidence 9888876544 2222 22344566667777888888999988888887643332 333455677888888888888777
Q ss_pred HHHHHh
Q 008806 380 SKLDQV 385 (553)
Q Consensus 380 ~~l~~~ 385 (553)
.+|-+.
T Consensus 346 ttllkt 351 (355)
T 3tjz_B 346 TTLLKT 351 (355)
T ss_dssp ------
T ss_pred HHhhhc
Confidence 666543
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.90 E-value=4.8e-08 Score=90.85 Aligned_cols=183 Identities=14% Similarity=0.160 Sum_probs=138.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc-------ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----
Q 008806 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-------RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---- 314 (553)
Q Consensus 246 l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~-------~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~---- 314 (553)
+...+.+++|+.|..+.+.+..+......... ...+.+.+.+.+.|.+..|...++.++..++...+..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45678899999999999998887765432211 1246678888999999999999999999988765432
Q ss_pred ----HHHHhHHHHHHH-hccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhh
Q 008806 315 ----LAIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (553)
Q Consensus 315 ----~~~~~l~~~l~~-l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 389 (553)
.....++|.+.. .+.|....+|..+..++..++...+.. ..+++.+...++..++.+|..++..+..++..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 234556776664 578999999999998888887654432 235677778889999999999999999999888
Q ss_pred chhhH-----HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh
Q 008806 390 GIDLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (553)
Q Consensus 390 ~~~~~-----~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~ 431 (553)
|.... .+.+++.+..++.|++..||.++..+++.+...+|..
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 76532 2456667788899999999999999999999998865
No 98
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.88 E-value=8.2e-08 Score=83.08 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=113.3
Q ss_pred hhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHhhhCchhhhh
Q 008806 123 VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKT 201 (553)
Q Consensus 123 ~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~-ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 201 (553)
.+.++++...+.+++..++|..|+.+++.. . ...++++.+.. +..|++|.||..++.+++.++...+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 456788999999999999999999999988 3 12668888887 8899999999999999999998666543
Q ss_pred hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 008806 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 271 (553)
.++.+..-+.|++..||..|++.+...+.........+.++|.+..+..|+++.||.+++..|..+++.
T Consensus 140 -~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 -ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 556777788999999999999887544433222333456899999999999999999999999998865
No 99
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.87 E-value=4.1e-06 Score=93.75 Aligned_cols=422 Identities=10% Similarity=-0.015 Sum_probs=238.0
Q ss_pred ccHHHHHHHhhhHHHHHHhhChHHHhhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCC-----cc-----------hh
Q 008806 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG-----VE-----------HA 84 (553)
Q Consensus 21 ~d~~~R~~a~~~l~~i~~~~~~~~~~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~-----~~-----------~~ 84 (553)
++..+|.+.+..++.++++..|+ .|+++++.+.+....++..+..+..+|..+.+.+.. .. ..
T Consensus 108 ~~~~vr~kla~~la~Ia~~d~p~-~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~ 186 (1204)
T 3a6p_A 108 EENHIKDALSRIVVEMIKREWPQ-HWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNM 186 (1204)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Confidence 46889999999999999887774 488999888883333555666677777666542110 00 01
Q ss_pred hcchhHHHhhhcc-------------------chhHHHHHHHHHHHHHHhhcChhhhhh---hHHHHHHHHhcCCCcchh
Q 008806 85 HVLLPPLETLCTV-------------------EETCVRDKAVESLCRIGSQMRESDLVD---WYIPLVKRLAAGEWFTAR 142 (553)
Q Consensus 85 ~~l~~~l~~l~~~-------------------~~~~vR~~a~~~l~~l~~~~~~~~~~~---~~l~~l~~~~~~~~~~~r 142 (553)
..+++.+..++.+ ++..++..+++++.....-.+...+.+ .+++.+..+..+ +.+|
T Consensus 187 ~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr 264 (1204)
T 3a6p_A 187 ERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQ 264 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHH
Confidence 1333433333322 234566777777776665555433322 377777777664 5789
Q ss_pred hhHhhhhHhhcCCCC-hHHH--------HHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhhhC----------
Q 008806 143 VSACGLFHIAYPSAP-DILK--------TELRSIYTQLC--------QDDMPMVRRSAASNLGKFAATVE---------- 195 (553)
Q Consensus 143 ~~~~~~l~~l~~~~~-~~~~--------~~l~~~l~~ll--------~d~~~~Vr~~a~~~l~~l~~~~~---------- 195 (553)
..|++++..++..-. ++.. ...+..+.+.. .|.+.++++..++.+..++....
T Consensus 265 ~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~ 344 (1204)
T 3a6p_A 265 LGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVE 344 (1204)
T ss_dssp HHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999998886542 2211 11111222222 33356777777777666653221
Q ss_pred chhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCC--cc----hhhhchHHHHHH---hc---CCCC---------
Q 008806 196 PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQ----DCVAHILPVIVN---FS---QDKS--------- 254 (553)
Q Consensus 196 ~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~----~~~~~ll~~l~~---l~---~d~~--------- 254 (553)
.......+++.+..+..+++..+-..++..+..+.+... .. .+...+++.+.. -+ .+.+
T Consensus 345 ~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~ 424 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRF 424 (1204)
T ss_dssp CCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhc
Confidence 123345788888888999998998888888887776532 21 123334444411 11 1100
Q ss_pred ------------HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-------------------------CcHHHH
Q 008806 255 ------------WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-------------------------NEAEVR 297 (553)
Q Consensus 255 ------------~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d-------------------------~~~~vr 297 (553)
+.-|+.....+..++...+... ...+.+.+...+.+ +.+...
T Consensus 425 D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~-l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 503 (1204)
T 3a6p_A 425 DFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTS-FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQW 503 (1204)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHH
Confidence 2346666666666665432211 12333444333322 111223
Q ss_pred HHHHHHHHHHHHhh---C-HH----HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHH-hHHHhHHHHHHHhhC
Q 008806 298 IAAAGKVTKFCRIL---N-PE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLLK 368 (553)
Q Consensus 298 ~~a~~~l~~~~~~~---~-~~----~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~p~l~~~l~ 368 (553)
.+....++.+.+.+ . .+ .+...+++.+..+ ...++.+|...+.+++.+...+... .+...++..++..+.
T Consensus 504 ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~ 582 (1204)
T 3a6p_A 504 EAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVT 582 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 34334444443332 1 01 1223333332222 3457889999999999888876532 234455555555555
Q ss_pred C------------CChHHHHHHHHHHHHhhhhhchhh--HHhhHHHHHHHhhcCC---CcHHHHHHHHHHHHHHhhhChh
Q 008806 369 D------------EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGVG 431 (553)
Q Consensus 369 d------------~~~~VR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~~~~d~---~~~vR~~~~~~l~~i~~~~~~~ 431 (553)
+ .+.+||.+|+.++..++...+... +.+.+...+..++... +..-+....+++..++..+++.
T Consensus 583 ~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~ 662 (1204)
T 3a6p_A 583 FETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNY 662 (1204)
T ss_dssp CCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCH
T ss_pred cCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCH
Confidence 4 234799999999999998765432 1255556565655433 3556677778888776665543
Q ss_pred h----hHHHHHHHHHHHccC
Q 008806 432 F----FDDKLGALCMQWLQD 447 (553)
Q Consensus 432 ~----~~~~l~~~l~~~l~D 447 (553)
. +...+++.+..-..+
T Consensus 663 ~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 663 ERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 2 334455555544443
No 100
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.87 E-value=7.1e-07 Score=76.32 Aligned_cols=184 Identities=12% Similarity=0.092 Sum_probs=149.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc---hhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc-h
Q 008806 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-D 237 (553)
Q Consensus 162 ~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~ 237 (553)
+..+..+.+++.|.++.|+..+..+++.+.+..+. ....+.++|-+.+++.++++.|-..|++++..+....+.. .
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34678888899999999999999999999988653 3456778898999999999999999999999998876542 2
Q ss_pred hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 008806 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI 317 (553)
Q Consensus 238 ~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 317 (553)
....+...+..+..+++.-.+..+++.+|.+ ..-...+.+..++.+++...+..++.+++.++..++..-+.....
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 3355788888888999999999999999987 222223578899999999999999999999998887765443445
Q ss_pred HhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh
Q 008806 318 QHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
+.+..-+..++++.++.++.-++.++..+...
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 67777788888999999999999988887653
No 101
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.86 E-value=5.1e-07 Score=83.88 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHhCC--CccccchHHHHHH-hcCCCcHHHHHHHHHHHHHHHHhhCH--HH-HHHhHHHHHHHhcc-
Q 008806 257 VRYMVANQLYELCEAVGP--EPTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRILNP--EL-AIQHILPCVKELSS- 329 (553)
Q Consensus 257 vR~~~~~~l~~l~~~~~~--~~~~~~llp~l~~-ll~d~~~~vr~~a~~~l~~~~~~~~~--~~-~~~~l~~~l~~l~~- 329 (553)
.|..++..|..++..... .......+|.++. +++++++.+|..|+++|+.++..-+. +. +....+|.+..++.
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 455555556555542211 1112346788888 99999999999999999998763211 11 22356788888877
Q ss_pred CCcHHHHHHHHHHHHhhhhhhCH---HhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchh----hHHhhHHHHH
Q 008806 330 DSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAI 402 (553)
Q Consensus 330 d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~----~~~~~ll~~l 402 (553)
+++..+|..++++++.++....+ .+.....+|.+..++++++..++..|+.++..++.. +++ .....++|.|
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHH
Confidence 56889999999999999865433 222346789999999999999999999999999875 222 2346788999
Q ss_pred HHhhcCCCcHHHHHHHHHHHHHHhh
Q 008806 403 VELAEDRHWRVRLAIIEYIPLLASQ 427 (553)
Q Consensus 403 ~~~~~d~~~~vR~~~~~~l~~i~~~ 427 (553)
..++.+++..+|..++.+++.++..
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999876
No 102
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.79 E-value=7.7e-09 Score=84.04 Aligned_cols=120 Identities=15% Similarity=0.045 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhH
Q 008806 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDI 203 (553)
Q Consensus 124 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l 203 (553)
..-.+.+..+++|+++.+|..++..++.+... . .+.+.++++|+++.||..++.+|+.+.. ...
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a 74 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE----A----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERA 74 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST----T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch----H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHH
Confidence 34566777888899999999999888866432 1 3777788899999999999999887642 244
Q ss_pred HHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008806 204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267 (553)
Q Consensus 204 ~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~ 267 (553)
+|.+...++|+++.||..++.+++.+.. ...+|.+.++++|+++.||..++.+|++
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 6777777889999999999999988762 3457777888888889999988888764
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.63 E-value=6.9e-07 Score=96.35 Aligned_cols=406 Identities=12% Similarity=0.052 Sum_probs=230.5
Q ss_pred HHhhhhhhhhhh-cCCCcHHHHHHHHHHhhccccccCC------cchhhcchhHHHhhhc-cchhHHHHHHHHHHHHHHh
Q 008806 44 RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG------VEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGS 115 (553)
Q Consensus 44 ~~~~~ll~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~ 115 (553)
...+.+.+.+.. +.+++..-++++++.+..++..... +..+..+.|++..... +-.++....|..++..+..
T Consensus 504 ~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~ 583 (997)
T 1vsy_5 504 LNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPA 583 (997)
T ss_dssp CCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhc
Confidence 446777888877 6777888889999999888764332 3577889999998877 5677778889988988888
Q ss_pred hcChhhhhhhHHHHHHHHh--c---C---CC---cchhhhHhh-hhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHH
Q 008806 116 QMRESDLVDWYIPLVKRLA--A---G---EW---FTARVSACG-LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSA 183 (553)
Q Consensus 116 ~~~~~~~~~~~l~~l~~~~--~---~---~~---~~~r~~~~~-~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a 183 (553)
..++.... |++.-++ . + ++ ...|...+. ++....-++.. .+.++..+. +.++...||++.
T Consensus 584 ~~DprR~~----~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~--~~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 584 VVDLRRSK----TFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD--VGKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp HSCGGGCH----HHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC--CHHHHHHCC--SCCSCHHHHHHH
T ss_pred CCChhhhH----HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc--HHHHHHHHH--hCCChHHHHHHH
Confidence 77654332 3333231 1 1 11 123443333 22333333332 344444444 788899999999
Q ss_pred HHHHHHHHhhhCchhhhhhHHHHHHHhhhCC-----------ChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCC
Q 008806 184 ASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-----------QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD 252 (553)
Q Consensus 184 ~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~-----------~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d 252 (553)
+..|..+....-.+.. ... ..+.+...+. ...+.....+.+..+....+.... .-| ...-
T Consensus 656 g~~L~~i~~~~~~~~~-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~---~~~----~~~~ 726 (997)
T 1vsy_5 656 AKLLTTLVQNQSNPSI-SDP-TTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVG---LNP----QQFI 726 (997)
T ss_dssp HHHHHHHHHTSCCCCB-SCH-HHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSS---CCS----TTTT
T ss_pred HHHHHHHHHhhcccCC-CCH-HHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccc---cCc----cccc
Confidence 9999888765421101 111 1111111111 112211112222222211000000 000 0000
Q ss_pred CCHHHHHHHHHHHH-HHHHHhCCC-------ccccchHHHHHHhcCCCcH-HHHHH-HHHHHHHHHHhhCHHHHHHhHHH
Q 008806 253 KSWRVRYMVANQLY-ELCEAVGPE-------PTRMDLVPAYVRLLRDNEA-EVRIA-AAGKVTKFCRILNPELAIQHILP 322 (553)
Q Consensus 253 ~~~~vR~~~~~~l~-~l~~~~~~~-------~~~~~llp~l~~ll~d~~~-~vr~~-a~~~l~~~~~~~~~~~~~~~l~~ 322 (553)
++. ....++++- -+...++.. .....++|.+..+.++++. +.... |...+..++...-+....+.++.
T Consensus 727 ~s~--y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~ 804 (997)
T 1vsy_5 727 KTD--YFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVD 804 (997)
T ss_dssp TSH--HHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHH
T ss_pred hHH--HHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 011 111122222 122222211 1112266666666666654 55444 44444444333323333466777
Q ss_pred HHHHhcc-CCcHHHHHHHHHHHHhhhh----hhCHHhHHHhHHHHHHHhhCCCC-hHHHHHHHHHHHHhhhhhch-hhHH
Q 008806 323 CVKELSS-DSSQHVRSALASVIMGMAP----LLGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI-DLLS 395 (553)
Q Consensus 323 ~l~~l~~-d~~~~vr~~~~~~l~~l~~----~~~~~~~~~~l~p~l~~~l~d~~-~~VR~~a~~~l~~~~~~~~~-~~~~ 395 (553)
.+..... +++| +|.+++..+..+.- .++++. ...+...+..+|.|+. .+||+.|+.+|..++...+. ...
T Consensus 805 ~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~- 881 (997)
T 1vsy_5 805 YVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPL- 881 (997)
T ss_dssp HSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHH-
T ss_pred HHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhH-
Confidence 7777666 6899 99999887665432 123332 3577889999999999 99999999999999887523 222
Q ss_pred hhHHHHHHHhhcC------------CCcHHHHHHHHHHHHHHhhhChh----hhHHHHHHHHHHHccCCchHHHHHHHHH
Q 008806 396 QSLLPAIVELAED------------RHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANN 459 (553)
Q Consensus 396 ~~ll~~l~~~~~d------------~~~~vR~~~~~~l~~i~~~~~~~----~~~~~l~~~l~~~l~D~~~~VR~~a~~~ 459 (553)
..++..+.+.+.. .+-..|-+++-.++++..+++-. .+.+.++..+-...+|+.+ |+..+=++
T Consensus 882 ~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~t 960 (997)
T 1vsy_5 882 LSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNT 960 (997)
T ss_dssp HHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHH
T ss_pred HHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHH
Confidence 2344444333311 11256778888999998876544 3566666666556777554 99999999
Q ss_pred HHHHHHHhChhHH
Q 008806 460 LKRLAEEFGPEWA 472 (553)
Q Consensus 460 l~~l~~~~~~~~~ 472 (553)
++.+-++....|.
T Consensus 961 lseFkrTH~D~W~ 973 (997)
T 1vsy_5 961 ISEFKKVRADTWK 973 (997)
T ss_dssp HHHHHHHTSTTHH
T ss_pred HHHHHhccchhHH
Confidence 9999999887775
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.10 E-value=0.00013 Score=78.76 Aligned_cols=309 Identities=12% Similarity=0.035 Sum_probs=164.7
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCc------hhhhhhHHHHHHHhhh-CCChhHHHHHHHHH
Q 008806 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGC 226 (553)
Q Consensus 154 ~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~l~p~l~~~~~-d~~~~vr~~a~~~l 226 (553)
.+.+....+.+.+.+..++.|++..-.+.+++.++.+...... +...+.+.|.+.+.+. +-.++....-..++
T Consensus 499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i 578 (997)
T 1vsy_5 499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA 578 (997)
T ss_dssp TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 5566667888999999999999999999999999988764321 3456688999988888 45555544444445
Q ss_pred HHhhccCCcchhhhchHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCCcHHHHHHH
Q 008806 227 AALGKLLEPQDCVAHILPVIVNF-----SQDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAA 300 (553)
Q Consensus 227 ~~l~~~~~~~~~~~~ll~~l~~l-----~~d~~~~vR~~~~~~l~~l~~~~~~~~~-~~~llp~l~~ll~d~~~~vr~~a 300 (553)
..+....++.. ...++..+... .+..+.-....-...|..+....+-... .+.++..+. +.++...||.+.
T Consensus 579 ~~~~~~~DprR-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 579 WWLPAVVDLRR-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp HHHHHHSCGGG-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHH
T ss_pred HHHhcCCChhh-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHH
Confidence 44444433321 22344444221 0111111111112223333333332211 123444444 566668888888
Q ss_pred HHHHHHHHHhhC------H----------------------HHHHHhHHHH---HHHhcc---C--C-----cH--HHHH
Q 008806 301 AGKVTKFCRILN------P----------------------ELAIQHILPC---VKELSS---D--S-----SQ--HVRS 337 (553)
Q Consensus 301 ~~~l~~~~~~~~------~----------------------~~~~~~l~~~---l~~l~~---d--~-----~~--~vr~ 337 (553)
...|..+....- . ..+.+.+... +...-. + + +. ..-.
T Consensus 656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~k 735 (997)
T 1vsy_5 656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTS 735 (997)
T ss_dssp HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHH
Confidence 887776655330 0 1111111111 111000 0 1 11 1122
Q ss_pred HHHHHHHhhhhhhCHHhH---H-HhHHHHHHHhhCCCCh-HHHHH-HHHHHHHhhhhhchhhHHhhHHHHHHHhhc-CCC
Q 008806 338 ALASVIMGMAPLLGKDAT---I-EQLLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRH 410 (553)
Q Consensus 338 ~~~~~l~~l~~~~~~~~~---~-~~l~p~l~~~l~d~~~-~VR~~-a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~-d~~ 410 (553)
+++..+............ . +.++|.+..+.++.+. +.... +..++..+....-.....+.++..+.+... +++
T Consensus 736 Tvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~s 815 (997)
T 1vsy_5 736 TIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSS 815 (997)
T ss_dssp HHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCS
T ss_pred HHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 333333322211111101 1 1244545444444433 34443 334454443332222223556666666665 679
Q ss_pred cHHHHHHHHHHHHHHhh----hChhhhHHHHHHHHHHHccCCc-hHHHHHHHHHHHHHHHHh
Q 008806 411 WRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 411 ~~vR~~~~~~l~~i~~~----~~~~~~~~~l~~~l~~~l~D~~-~~VR~~a~~~l~~l~~~~ 467 (553)
| .|.+++..+..+.-. ++.+.. ..+...+..+|.|+. .+||+.|+.+|+.++...
T Consensus 816 W-~R~~~L~~lq~~~f~n~f~l~~~~~-~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 816 N-QTKLQLAFIQHFLSAELLQLTEEEK-NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp S-SHHHHHHHHHHHHHHHTTTSCTTHH-HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 9 999999988766542 233322 467888889999999 999999999999999776
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.07 E-value=0.0016 Score=62.48 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=29.8
Q ss_pred hhHHHHHHHhhcC-CCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHc
Q 008806 396 QSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (553)
Q Consensus 396 ~~ll~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l 445 (553)
+.++|.+..+... +....+...+.++..++..+|........+|.+...|
T Consensus 267 ~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 267 EQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp HHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred HhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 4455544444332 2223677888999999999884444445666665543
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.03 E-value=0.0024 Score=61.25 Aligned_cols=258 Identities=17% Similarity=0.110 Sum_probs=154.5
Q ss_pred hhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHH
Q 008806 99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178 (553)
Q Consensus 99 ~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~ 178 (553)
+...++.|...+..+.++++. .....+.....+++|++..+|..|+.-+..++.. +....+...+.++++..++.
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd~~ 115 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDDSA 115 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCCHH
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccchH
Confidence 466777888888888888874 3445667777888999999999999998888876 66888899999999999988
Q ss_pred HHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc----hhhhchHHHHHHhcCCCC
Q 008806 179 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDKS 254 (553)
Q Consensus 179 Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~ 254 (553)
-+..+-++|..+.+.-+ ...+..++..+.+ .++.+|..+++.+..-...++.+ .....+...+.+.++|.+
T Consensus 116 E~~~V~~sL~sllk~Dp----k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT 190 (507)
T 3u0r_A 116 EFNLVNNALLSIFKMDA----KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT 190 (507)
T ss_dssp HHHHHHHHHHHHHHHCH----HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhcCh----HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence 88888888888876422 2233333444344 46799999998886655554443 233446777778888876
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc------CCCcHHHHHHHHHHHHH----HHHhhCHHHH----HHhH
Q 008806 255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL------RDNEAEVRIAAAGKVTK----FCRILNPELA----IQHI 320 (553)
Q Consensus 255 ~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll------~d~~~~vr~~a~~~l~~----~~~~~~~~~~----~~~l 320 (553)
..-=..+...|..+- ..+.-...+.+++++.+.. .-.|.+.-.-.+.++.. +....+...+ ...+
T Consensus 191 ~~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kI 269 (507)
T 3u0r_A 191 GEEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQV 269 (507)
T ss_dssp HHHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhh
Confidence 432222222221110 1111111235666665542 11233322223333333 3233333333 3445
Q ss_pred HHHHHHhccC-CcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh
Q 008806 321 LPCVKELSSD-SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367 (553)
Q Consensus 321 ~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l 367 (553)
+|.+..+... .....+..+++++..++...|........++.+.+.|
T Consensus 270 lP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 270 LPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp GGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred ccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 5554443321 1122566789999999998884333444555555444
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.89 E-value=0.0027 Score=63.87 Aligned_cols=289 Identities=12% Similarity=0.058 Sum_probs=162.0
Q ss_pred CcHHHHHHHHHHhhccccccCCcchhhcchhHHHhhhcc-chhHHHHHHHHHHHHHHhhcChh-----------------
Q 008806 59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRES----------------- 120 (553)
Q Consensus 59 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~----------------- 120 (553)
+-.+-|+.|...|..+++.....--..-+-+++..+.+| +|.++-+.++++|..+...-+.+
T Consensus 34 tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (651)
T 3grl_A 34 TLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQF 113 (651)
T ss_dssp CSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHH
Confidence 345567777777776665433211112233333334443 23444445666665544321110
Q ss_pred --hh--hhhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 008806 121 --DL--VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE------LRSIYTQLCQDDMPMVRRSAASNLGKF 190 (553)
Q Consensus 121 --~~--~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~------l~~~l~~ll~d~~~~Vr~~a~~~l~~l 190 (553)
.+ .+.-++.+..++++++..+|..+++++..+...-+...++. -++.+..+++|+...+|..++-.|..+
T Consensus 114 ~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~L 193 (651)
T 3grl_A 114 TEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQAL 193 (651)
T ss_dssp HHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 00 12357788888899999999999999999887765543333 458899999999999999999999998
Q ss_pred HhhhCc---hhhhhhHHHHHHHhhhCCCh----hHHHHHHHHHHHhhccCCc--chhh-hchHHHHHHhcC----CCCHH
Q 008806 191 AATVEP---AHLKTDIMSIFEDLTQDDQD----SVRLLAVEGCAALGKLLEP--QDCV-AHILPVIVNFSQ----DKSWR 256 (553)
Q Consensus 191 ~~~~~~---~~~~~~l~p~l~~~~~d~~~----~vr~~a~~~l~~l~~~~~~--~~~~-~~ll~~l~~l~~----d~~~~ 256 (553)
++.-.. -...+..++.+..++.++.. .|-.-|+..+..+++.-.. ..+. ...+|.+..+++ +..|.
T Consensus 194 t~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~ 273 (651)
T 3grl_A 194 TRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWS 273 (651)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCC
T ss_pred hcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccH
Confidence 874332 01123455666666655443 5666777788888765211 1111 123444444443 22343
Q ss_pred HHHHHHH--HHHHHHHHh-CCCc------------cccchHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCH--HHHH
Q 008806 257 VRYMVAN--QLYELCEAV-GPEP------------TRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNP--ELAI 317 (553)
Q Consensus 257 vR~~~~~--~l~~l~~~~-~~~~------------~~~~llp~l~~ll~d~--~~~vr~~a~~~l~~~~~~~~~--~~~~ 317 (553)
-++ ... ..-.++..+ .... ....+++.+++++... ...++..|+.+++.+...-.. +.+.
T Consensus 274 ~Qk-~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa 352 (651)
T 3grl_A 274 AQK-VTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFA 352 (651)
T ss_dssp HHH-HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHh
Confidence 222 111 122222222 2111 1234677777776654 467899999998887653211 1221
Q ss_pred ----------HhHHHHHHHhccC-CcHHHHHHHHHHHHhhhh
Q 008806 318 ----------QHILPCVKELSSD-SSQHVRSALASVIMGMAP 348 (553)
Q Consensus 318 ----------~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~ 348 (553)
..++..+..++.+ +...+|.+++.++..+..
T Consensus 353 ~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 353 SVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred hccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 1122223333444 457889999998887763
No 108
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.87 E-value=0.0083 Score=60.40 Aligned_cols=226 Identities=11% Similarity=0.125 Sum_probs=137.1
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-H
Q 008806 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-E 314 (553)
Q Consensus 241 ~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~-----~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~-~ 314 (553)
.-++.+..+++..+..+|..+.+.|..++..-+... ..+.-+|.++.+++|+...+|..++..|..+++.-.. +
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence 357778888899999999999999999997644321 1235688999999999999999999999888774211 0
Q ss_pred --HHHHhHHHHHHHhccCCc----HHHHHHHHHHHHhhhhhh--CHHhHH-HhHHHHHHHhhCCCCh----H--HHHH--
Q 008806 315 --LAIQHILPCVKELSSDSS----QHVRSALASVIMGMAPLL--GKDATI-EQLLPIFLSLLKDEFP----D--VRLN-- 377 (553)
Q Consensus 315 --~~~~~l~~~l~~l~~d~~----~~vr~~~~~~l~~l~~~~--~~~~~~-~~l~p~l~~~l~d~~~----~--VR~~-- 377 (553)
...+...+.+..++.... ..|-.-++..+..+...- ....+. ...+|.+..+++.+.. . ....
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~ 281 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLH 281 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHH
Confidence 112334555555554433 356566666777776542 122222 2345555566643221 1 1122
Q ss_pred -HHHHHHHhhhhhch---h------hHHhhHHHHHHHhhcCC--CcHHHHHHHHHHHHHHhhhCh--hhhH---------
Q 008806 378 -IISKLDQVNQVIGI---D------LLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGV--GFFD--------- 434 (553)
Q Consensus 378 -a~~~l~~~~~~~~~---~------~~~~~ll~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~~--~~~~--------- 434 (553)
++..+..++..-+. . .....+++.+.+++..+ ...+|..++.+++.+...-.. +.|.
T Consensus 282 ~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~ 361 (651)
T 3grl_A 282 LMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPP 361 (651)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSC
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCC
Confidence 23333333322111 1 12345667777776655 567899999999987754211 1111
Q ss_pred -HHHHHHHHHHccC-CchHHHHHHHHHHHHHHHH
Q 008806 435 -DKLGALCMQWLQD-KVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 435 -~~l~~~l~~~l~D-~~~~VR~~a~~~l~~l~~~ 466 (553)
+.++..++.++.+ ....+|-+|+.++..+...
T Consensus 362 ~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 362 RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 2244445555655 4578999999999887743
No 109
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.79 E-value=0.053 Score=56.80 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=63.5
Q ss_pred hhhhhhhhhhcCCCcHHHHHHHHHHhhccccccCCc---chhhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhh
Q 008806 46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV---EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL 122 (553)
Q Consensus 46 ~~~ll~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~ 122 (553)
...++|++..+++++++.|..++.+|.+++..-... ...+.+.+++..++.|++.+||.+|..+|..++..-+.+..
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 357889988888899999999999999998621111 12234556778888999999999999999999876554322
Q ss_pred ----hhhHHHHHHHHh
Q 008806 123 ----VDWYIPLVKRLA 134 (553)
Q Consensus 123 ----~~~~l~~l~~~~ 134 (553)
...+++.+..++
T Consensus 113 ~~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHHTTHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHH
Confidence 223555555443
No 110
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.74 E-value=0.0013 Score=58.17 Aligned_cols=184 Identities=12% Similarity=0.108 Sum_probs=113.9
Q ss_pred hHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--H
Q 008806 242 ILPVIVNFSQDKSW--RVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E 314 (553)
Q Consensus 242 ll~~l~~l~~d~~~--~vR~~~~~~l~~l~~~~~~---~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~--~ 314 (553)
.+|.+.+++...++ .++..++..+..++..-.. .......+|.++++++..+++++..|+.+|..++..-.. .
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666555 7777777777777643111 111234689999999998999999999999988753111 1
Q ss_pred H-HHHhHHHHHHHhcc-CCcHHHHHHHHHHHHhhhhhhC-HHhHHHhHHHHHHHhhC-------C---------CChHHH
Q 008806 315 L-AIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLLK-------D---------EFPDVR 375 (553)
Q Consensus 315 ~-~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~p~l~~~l~-------d---------~~~~VR 375 (553)
. .....+|.+..++. .+++.+++.++.++..++..-. +....+.-+|.+..++. + .+..|+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 1 12346788888886 5789999999988888875322 22223334565555431 1 256899
Q ss_pred HHHHHHHHHhhhhh--chhhHH--hhHHHHHHHhhc------CCCcHHHHHHHHHHHHHH
Q 008806 376 LNIISKLDQVNQVI--GIDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 376 ~~a~~~l~~~~~~~--~~~~~~--~~ll~~l~~~~~------d~~~~vR~~~~~~l~~i~ 425 (553)
+.|..+|..+...- +...+. ..+++.|..++. +.+...++.++.++..+.
T Consensus 169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 99998888886521 111121 235555555532 224566677777776654
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.72 E-value=0.0013 Score=58.08 Aligned_cols=186 Identities=13% Similarity=0.064 Sum_probs=120.6
Q ss_pred cchHHHHHHhcCCCcH--HHHHHHHHHHHHHHHhhCH--H-HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCH-
Q 008806 279 MDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK- 352 (553)
Q Consensus 279 ~~llp~l~~ll~d~~~--~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~- 352 (553)
..-+|.+++++..+++ .++..|+..+..++..-.. . ......+|.+.+++.+++..++..++.++..++..-..
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 4468999999988776 8888888888887753221 1 22234689999999999999999999999999853111
Q ss_pred -H-hHHHhHHHHHHHhhC-CCChHHHHHHHHHHHHhhhhhch-hhHHhhHHHHHHHhhc----------------CCCcH
Q 008806 353 -D-ATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVELAE----------------DRHWR 412 (553)
Q Consensus 353 -~-~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~-~~~~~~ll~~l~~~~~----------------d~~~~ 412 (553)
. ......+|.+.++|. .++.++++.++.+|-.+...-.. ..+.+.-+|.|.+++. ..+..
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 1 113456899999997 46899999999888887653221 1122334566654331 12458
Q ss_pred HHHHHHHHHHHHHhhh--ChhhhH--HHHHHHHHHHccC------CchHHHHHHHHHHHHHH
Q 008806 413 VRLAIIEYIPLLASQL--GVGFFD--DKLGALCMQWLQD------KVYSIRDAAANNLKRLA 464 (553)
Q Consensus 413 vR~~~~~~l~~i~~~~--~~~~~~--~~l~~~l~~~l~D------~~~~VR~~a~~~l~~l~ 464 (553)
++..+..++..++..- ....+. ..+++.++.+++. .+...++.++-+|..+.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 9999999998887531 111111 1245555554432 34456666666665543
No 112
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.28 E-value=0.091 Score=46.88 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=93.8
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHH
Q 008806 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360 (553)
Q Consensus 281 llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 360 (553)
++..+.+.-...+ +.+...+.....+.-.-++. +.+.+++.+..+..|++..+|..++..+...+.. +.......+
T Consensus 17 v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l 92 (257)
T 3gs3_A 17 VVDWCNELVIASP-STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVI 92 (257)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHH
T ss_pred HHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3344443333333 46666666555544433343 5577778777888888888888888888777732 233456677
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhhhhh-------ch-------hh-HHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 008806 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVI-------GI-------DL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (553)
Q Consensus 361 p~l~~~l~d~~~~VR~~a~~~l~~~~~~~-------~~-------~~-~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~ 425 (553)
+.+..+++|+++.|.+.++.+...+.... +. .| .-..+...+.....+.+..+|..++..+..+.
T Consensus 93 ~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 93 NVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 88888888888888888887777765432 11 11 01345556667778889999999999999887
Q ss_pred hh
Q 008806 426 SQ 427 (553)
Q Consensus 426 ~~ 427 (553)
..
T Consensus 173 l~ 174 (257)
T 3gs3_A 173 VL 174 (257)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.12 E-value=0.046 Score=60.18 Aligned_cols=173 Identities=10% Similarity=0.028 Sum_probs=101.7
Q ss_pred hHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCCC--ccc----cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 008806 242 ILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE--PTR----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311 (553)
Q Consensus 242 ll~~l~~l~~d----~~~~vR~~~~~~l~~l~~~~~~~--~~~----~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~ 311 (553)
++..+..++++ .++.+|..+.-+++.++...... ... +.+...+.+.+...+.+-+..++.+|+.++.-
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p- 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP- 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence 34444444443 56789999999999998764322 111 23444445555666677778888888876541
Q ss_pred CHHHHHHhHHHHHHHh---ccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh--CCCChHHHHHHHHHHHHhh
Q 008806 312 NPELAIQHILPCVKEL---SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVN 386 (553)
Q Consensus 312 ~~~~~~~~l~~~l~~l---~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l--~d~~~~VR~~a~~~l~~~~ 386 (553)
+ ..+.+.+.+... ..+...++|.+++.++..++.... ..+.+.+.+.+ .+.+++||.+|+..|-...
T Consensus 471 --~-~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~ 542 (1056)
T 1lsh_A 471 --N-SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRSCIVFFESK 542 (1056)
T ss_dssp --G-GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC
T ss_pred --h-HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC
Confidence 1 122333332211 123356899999999999885322 23455566666 4567899999987664322
Q ss_pred hhhchhhHHhhHHHHHHH-hhcCCCcHHHHHHHHHHHHHHhhhCh
Q 008806 387 QVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGV 430 (553)
Q Consensus 387 ~~~~~~~~~~~ll~~l~~-~~~d~~~~vR~~~~~~l~~i~~~~~~ 430 (553)
- + ..++..+.. +..+++..|+......+..++..-.+
T Consensus 543 P---~----~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 543 P---S----VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp C---C----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred c---C----HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 1 1 122333333 33557778887777777777765433
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.85 E-value=0.1 Score=57.46 Aligned_cols=276 Identities=10% Similarity=0.084 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhh
Q 008806 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240 (553)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (553)
..++...+.+++.+....+...++..+..+...+..- -.+.+..++.+.. + ....|..-.++++..+..
T Consensus 287 ~~~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~lR~~-~~e~L~~l~~~~~-~-~~~~r~~~lDal~~aGT~-------- 355 (1056)
T 1lsh_A 287 ESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNV-DAGVLQSIWHKLH-Q-QKDYRRWILDAVPAMATS-------- 355 (1056)
T ss_dssp HHHHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHTTS-CHHHHHHHHHHHT-T-SHHHHHHHHHHHHHHCSH--------
T ss_pred HHHHHHHHHHHHhccccccCcchHHHHHHHHHHHhcC-CHHHHHHHHHHHh-c-cHHHHHHHHHHhHhcCCH--------
Confidence 3455556666655444444445555566555554421 1123333332222 2 345666556666655431
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC----cHHHHHHHHHHHHHHHHhhC----
Q 008806 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN----EAEVRIAAAGKVTKFCRILN---- 312 (553)
Q Consensus 241 ~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~----~~~vr~~a~~~l~~~~~~~~---- 312 (553)
..+.++.+.+....-.... +++.+...... . . ....++..+..+++++ ++.+|..++-+++.+.....
T Consensus 356 ~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~-~-~-Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~ 431 (1056)
T 1lsh_A 356 EALLFLKRTLASEQLTSAE-ATQIVASTLSN-Q-Q-ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTV 431 (1056)
T ss_dssp HHHHHHHHHHHTTCSCHHH-HHHHHHHHHHT-C-C-CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHcCCCCHHH-HHHHHHHhhcc-C-C-CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCC
Confidence 1233333333332211111 44444433322 1 1 1345777788888653 46789999999988876431
Q ss_pred --HHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhC-------CCChHHHHHHHHHHH
Q 008806 313 --PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-------DEFPDVRLNIISKLD 383 (553)
Q Consensus 313 --~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-------d~~~~VR~~a~~~l~ 383 (553)
+......+...+.+.+...+...+..++++|+.++. ...++.+..++. +....||.+|+.+|.
T Consensus 432 ~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr 503 (1056)
T 1lsh_A 432 SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALR 503 (1056)
T ss_dssp SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHHhhcCccccccccchHHHHHHHHHHH
Confidence 112233444445555566677788889999998874 123555555553 223568999999999
Q ss_pred HhhhhhchhhHHhhHHHHHHHhhc--CCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 008806 384 QVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 461 (553)
Q Consensus 384 ~~~~~~~~~~~~~~ll~~l~~~~~--d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~ 461 (553)
.+.... + +.+-+.+..+.. ..+..+|.+|+..+- ...+.......+ ...+-.|++.+|+......+.
T Consensus 504 ~~~~~~-p----~~v~~il~~i~~n~~e~~EvRiaA~~~Lm---~t~P~~~~l~~i---a~~l~~E~~~QV~sfv~S~l~ 572 (1056)
T 1lsh_A 504 NIAKRD-P----RKVQEIVLPIFLNVAIKSELRIRSCIVFF---ESKPSVALVSMV---AVRLRREPNLQVASFVYSQMR 572 (1056)
T ss_dssp TGGGTC-H----HHHHHHHHHHHHCTTSCHHHHHHHHHHHH---HTCCCHHHHHHH---HHHHTTCSCHHHHHHHHHHHH
T ss_pred Hhhhhc-h----HHHHHHHHHHhcCCCCChHHHHHHHHHHH---HHCcCHHHHHHH---HHHHhhCchHHHHHHHHHHHH
Confidence 887531 1 334555555553 357889999887663 222222222222 233456788999999888888
Q ss_pred HHHHHhChh
Q 008806 462 RLAEEFGPE 470 (553)
Q Consensus 462 ~l~~~~~~~ 470 (553)
.+.+...+.
T Consensus 573 sla~s~~P~ 581 (1056)
T 1lsh_A 573 SLSRSSNPE 581 (1056)
T ss_dssp HHTTCCSGG
T ss_pred HHHhcCCcc
Confidence 888776653
No 115
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.63 E-value=0.0062 Score=63.91 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=21.0
Q ss_pred HHHHHHHHHccC---CchHHHHHHHHHHHHHHHH
Q 008806 436 KLGALCMQWLQD---KVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 436 ~l~~~l~~~l~D---~~~~VR~~a~~~l~~l~~~ 466 (553)
..+|.++..+.+ ...+|+..|+++|..+.+.
T Consensus 182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 345555555432 3457999999999988764
No 116
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.20 E-value=0.38 Score=44.15 Aligned_cols=183 Identities=13% Similarity=0.072 Sum_probs=114.0
Q ss_pred cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CH-----HHH--HHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhh
Q 008806 279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NP-----ELA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350 (553)
Q Consensus 279 ~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~-~~-----~~~--~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~ 350 (553)
..++..++..+..-+.+.|+.+..-+..+...- |. +++ .+.++..+....++++...-.+. .+-..+
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLReci--- 151 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECI--- 151 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHH---
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHH---
Confidence 456777777777777777877777666655431 11 111 13344555555554443211111 011111
Q ss_pred CHHhH-----HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhc---hhhH---HhhHHHHHHHhhcCCCcHHHHHHHH
Q 008806 351 GKDAT-----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLL---SQSLLPAIVELAEDRHWRVRLAIIE 419 (553)
Q Consensus 351 ~~~~~-----~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~---~~~~---~~~ll~~l~~~~~d~~~~vR~~~~~ 419 (553)
..+.. ....+-.+.+..+.++.+|-..|..++..+..... .+.+ .+.+......++.++||-+|..++.
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 11111 11112245567788999999999999998865422 1221 1556777788999999999999999
Q ss_pred HHHHHHhhhChhhhH------HHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 008806 420 YIPLLASQLGVGFFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 420 ~l~~i~~~~~~~~~~------~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
.+|.+...-....+. ..-+..++.+++|++.+++..|.+.+..++.+
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 999988432222222 23466888999999999999999999988865
No 117
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.09 E-value=0.99 Score=42.74 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 008806 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (553)
Q Consensus 243 l~~l~~l~~d~~~~vR~~~~~~l~~l~~~~ 272 (553)
-..+....+..+..||..+++.+..++-..
T Consensus 156 K~~Il~~~ds~n~GVrl~aiKFle~VIl~q 185 (386)
T 3o2t_A 156 AGDIILLLDSDNDGIRTHAIKFVEGLIVTL 185 (386)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence 333444566677889999999988887654
No 118
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.90 E-value=0.88 Score=40.53 Aligned_cols=129 Identities=14% Similarity=0.145 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHH
Q 008806 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVR 297 (553)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr 297 (553)
.|...+.-...++-.-++. +.+.+++.+..+..|.+..+|+-++..+++.+.. +.......++.+..+++|+++.|.
T Consensus 31 ~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~ 107 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4444444444443332222 4455566666666666666777666666666633 111223455666666666666666
Q ss_pred HHHHHHHHHHHHhh-------CH-----H---HHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh
Q 008806 298 IAAAGKVTKFCRIL-------NP-----E---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 298 ~~a~~~l~~~~~~~-------~~-----~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
+.++.+...+.... +. + .....+...+.....+.+..+|..+++.+..+...
T Consensus 108 K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 108 KRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 66666555544321 11 1 11234445555666778899999999888887643
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.65 E-value=0.43 Score=40.30 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=90.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhC------CChhHHHHHHHHHHHhhcc--CCcc
Q 008806 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD------DQDSVRLLAVEGCAALGKL--LEPQ 236 (553)
Q Consensus 165 ~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d------~~~~vr~~a~~~l~~l~~~--~~~~ 236 (553)
+..+.+.+.+ ..|+.|...|.. +.-.+.++|.+.....+ .+...-...++...++... +.-+
T Consensus 13 f~~It~a~~~---~~r~~aL~sL~~-------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~le 82 (196)
T 4atg_A 13 FDKILSMIKS---DMKDIAIECLEK-------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFID 82 (196)
T ss_dssp HHHHHHHHTS---TTHHHHHHHHHH-------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCG
T ss_pred HHHHHHHHHh---HHHHHHHHHHhc-------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChH
Confidence 4444444444 346665555542 33356677777665433 2333334445555555543 3445
Q ss_pred hhhhchHHHHHHhcC--CCC-HHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHH
Q 008806 237 DCVAHILPVIVNFSQ--DKS-WRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCR 309 (553)
Q Consensus 237 ~~~~~ll~~l~~l~~--d~~-~~vR~~~~~~l~~l~~~~~~~~--~~~~llp~l~~ll~d~~--~~vr~~a~~~l~~~~~ 309 (553)
.+...++|.+..++- +-. ...|..+++.++.++..++... ..+.+...+.+.+.|++ ....-+|+..|..
T Consensus 83 pYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~--- 159 (196)
T 4atg_A 83 PYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI--- 159 (196)
T ss_dssp GGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH---
Confidence 677778888776431 111 2799999999999999988643 23456667777776654 4566677777665
Q ss_pred hhCHHHHHHhHHHHHHHhcc
Q 008806 310 ILNPELAIQHILPCVKELSS 329 (553)
Q Consensus 310 ~~~~~~~~~~l~~~l~~l~~ 329 (553)
+|++.+...++|.+..+.+
T Consensus 160 -lG~~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 160 -LSKNVVNTVIREHAEEYKR 178 (196)
T ss_dssp -HCHHHHHTHHHHHHHHHHH
T ss_pred -hHHHHHHHhhhcCHHHHHH
Confidence 4666665666788766553
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.56 E-value=0.77 Score=38.75 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcC------CCcHHHHHHHHHHHHHHhh--hChhhhHHHHHHHHHHH
Q 008806 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW 444 (553)
Q Consensus 373 ~VR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d------~~~~vR~~~~~~l~~i~~~--~~~~~~~~~l~~~l~~~ 444 (553)
..|..|+..|..= -| .+.++|.+..+..+ .|...-...+..+.++... +.-+.+...++|.++.+
T Consensus 23 ~~r~~aL~sL~~D---~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEKE---SG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHHC---SS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 3466666555422 22 24556666544322 2555555556666666543 34466778899999887
Q ss_pred ccC---CchHHHHHHHHHHHHHHHHhChhH--Hhhhhhhhhhhhhhhhc
Q 008806 445 LQD---KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQKSHVLDCCQ 488 (553)
Q Consensus 445 l~D---~~~~VR~~a~~~l~~l~~~~~~~~--~~~~i~p~l~~~l~~~~ 488 (553)
+-. ....+|..|+..++.++..+|... ....+...+.+.+.|++
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~ 144 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN 144 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC
Confidence 532 112799999999999999998643 34566666666666654
No 121
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=93.80 E-value=0.6 Score=40.72 Aligned_cols=131 Identities=9% Similarity=-0.051 Sum_probs=87.5
Q ss_pred HHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHH
Q 008806 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI 206 (553)
Q Consensus 128 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~ 206 (553)
.++..+..++..+.|..++.+++.......++ -++.+...+. -++|.+--..+.+++.++...+ +.+.+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~----~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-----~~~~~~ 128 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLE----EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TELPTI 128 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH----HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHH----HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-----HHHHHH
Confidence 55566666677788888888888765444432 3444444443 4677887777766777765422 234556
Q ss_pred HHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 008806 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (553)
Q Consensus 207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 271 (553)
+..-..+++..+|..|+..+- ... .+...+.+++.+..+..|++.-|+++++..|..++..
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l---~~~-~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQL---MLK-EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTT---TCG-GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHH---HHH-HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 666788888888888876442 221 2223355777777788999999999999998887643
No 122
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.71 E-value=4.8 Score=38.09 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=79.7
Q ss_pred hHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 008806 202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 281 (553)
Q Consensus 202 ~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l 281 (553)
.++.++.+.-...+ ..+...+.-...++-.-++ ...+.+++.+..+..|.+..+|+.++..+.+.+.. .......+
T Consensus 26 ~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~ 101 (386)
T 3o2t_A 26 RVVDLLNQAALITN-DSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKL 101 (386)
T ss_dssp HHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHH
T ss_pred HHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 44444443333222 2455555544444332222 24456677777777777777777777777776653 11112345
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHhh--------C-----HHH--HHHhHHHHHHHhccCCcHHHHHHHHHHHHhh
Q 008806 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRIL--------N-----PEL--AIQHILPCVKELSSDSSQHVRSALASVIMGM 346 (553)
Q Consensus 282 lp~l~~ll~d~~~~vr~~a~~~l~~~~~~~--------~-----~~~--~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l 346 (553)
++.+..+++|+++.|.+.++.+...+.... + .+. ....+...+.....+.+..||..+++.+..+
T Consensus 102 l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 102 IANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 666666777777777666666655544321 1 011 1233445555666777888998888888776
Q ss_pred hh
Q 008806 347 AP 348 (553)
Q Consensus 347 ~~ 348 (553)
..
T Consensus 182 Il 183 (386)
T 3o2t_A 182 IV 183 (386)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 123
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=92.47 E-value=1.3 Score=39.03 Aligned_cols=159 Identities=9% Similarity=-0.067 Sum_probs=92.6
Q ss_pred HHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHhhhCchhhhhhHHHH
Q 008806 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA-SNLGKFAATVEPAHLKTDIMSI 206 (553)
Q Consensus 128 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~-~~l~~l~~~~~~~~~~~~l~p~ 206 (553)
.++..+.+++..+.|..|+..+........++....+-. +.. ..++|.+--..+ ..+|.+...-+ + ...+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~-~l~--~~~nWd~~D~~a~~~~g~~~~~~p-~----~~~~~ 135 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEE-LIV--TKSWWDSVDSIVPTFLGDIFLKHP-E----LISAY 135 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHH-HHT--SSCCHHHHHHHTTTHHHHHHHHCG-G----GGGGT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHc--cCCChHHHHHhhHHHHHHHHHHCH-H----HHHHH
Confidence 345555566666677777777765555444443322221 211 356777766554 55676665422 2 23344
Q ss_pred HHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q 008806 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 286 (553)
Q Consensus 207 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~ 286 (553)
+.....+++..+|..|+..+. . ... +.....+++.+..+..|++..|+.+++..|..++... .+.+.+.+.
T Consensus 136 l~~W~~s~~~w~rR~ai~~~l--~-~~~-~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~-----p~~v~~fl~ 206 (232)
T 3jxy_A 136 IPKWIASDNIWLQRAAILFQL--K-YKQ-KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTN-----PDVVWEYVQ 206 (232)
T ss_dssp HHHHHHSSCHHHHHHHHHTTT--T-CGG-GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTC-----HHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHH--H-HHh-CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhC-----HHHHHHHHH
Confidence 555677888888888775542 1 111 1122346777778899999999999999998876431 234556655
Q ss_pred HhcCCCcHHHHHHHHHHHH
Q 008806 287 RLLRDNEAEVRIAAAGKVT 305 (553)
Q Consensus 287 ~ll~d~~~~vr~~a~~~l~ 305 (553)
+. .-+.-.+..|++.|+
T Consensus 207 ~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 207 NN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HS--CCCHHHHHHHTTTTH
T ss_pred HC--CCCHHHHHHHHHhcc
Confidence 53 233445555555554
No 124
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=91.92 E-value=4.7 Score=34.97 Aligned_cols=131 Identities=6% Similarity=-0.018 Sum_probs=89.9
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 008806 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 283 (553)
Q Consensus 205 p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~-d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp 283 (553)
..+.++..++..+.|..|+..+......... .-++.+...+. ..+|.+-...+.+++.+... ....+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence 4455566778888999999888876533322 23445555544 46788888877667777654 1234778
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhh
Q 008806 284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349 (553)
Q Consensus 284 ~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~ 349 (553)
.+.++..|++.-+|..|+..+-. ... +...+.+++.+...+.|++..||.++..+|..++..
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~---~~~-~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLM---LKE-KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTT---CGG-GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH---HHH-CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 88999999998888877775422 221 112345566667788999999999999999998865
No 125
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=91.01 E-value=4.3 Score=35.59 Aligned_cols=158 Identities=11% Similarity=0.065 Sum_probs=96.2
Q ss_pred HHHHHhhhCCChhHHHHHHHHHHHhhccCCcchhhhchHHHHHHhc-CCCCHHHHHHHH-HHHHHHHHHhCCCccccchH
Q 008806 205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVA-NQLYELCEAVGPEPTRMDLV 282 (553)
Q Consensus 205 p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~-~d~~~~vR~~~~-~~l~~l~~~~~~~~~~~~ll 282 (553)
..+..+..++..+.|..|+..+....+.+..+. ++.+...+ ...+|.+-...+ ..++.+...- ...+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~ 133 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELIS 133 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHH
Confidence 345556677778899988888875544443322 23333332 356788776664 5567766541 22356
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHH
Q 008806 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 362 (553)
Q Consensus 283 p~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~ 362 (553)
+.+.++..|++.-+|..|+..+-.. ..... ...+.+.+...+.|++..|+.++..+|..++.... +.+.+.
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~---~~~~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p-----~~v~~f 204 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKY---KQKMD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP-----DVVWEY 204 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTC---GGGCC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH-----HHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHH---HhCCC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH-----HHHHHH
Confidence 7778888888888877777654221 11111 23455666778899999999999999999986532 223444
Q ss_pred HHHhhCCCChHHHHHHHHHHH
Q 008806 363 FLSLLKDEFPDVRLNIISKLD 383 (553)
Q Consensus 363 l~~~l~d~~~~VR~~a~~~l~ 383 (553)
+.+- .-+...+..|++.++
T Consensus 205 l~~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 205 VQNN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HHHS--CCCHHHHHHHTTTTH
T ss_pred HHHC--CCCHHHHHHHHHhcc
Confidence 4432 334555555555554
No 126
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.93 E-value=2.2 Score=33.99 Aligned_cols=83 Identities=10% Similarity=0.058 Sum_probs=53.5
Q ss_pred hHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhh
Q 008806 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL 199 (553)
Q Consensus 125 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 199 (553)
..+..+.+-+++.++.+...++.++..+..++|.... .+++..+..++...++.||..+...+...+..++.+.-
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~ 121 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQ 121 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3455555556666677777777777777777776522 34555555555567788888888888888877765443
Q ss_pred hhhHHHHH
Q 008806 200 KTDIMSIF 207 (553)
Q Consensus 200 ~~~l~p~l 207 (553)
...+...+
T Consensus 122 l~~i~~~Y 129 (140)
T 3ldz_A 122 LSLISAMI 129 (140)
T ss_dssp GTHHHHHH
T ss_pred chHHHHHH
Confidence 33343333
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.89 E-value=4 Score=33.40 Aligned_cols=73 Identities=8% Similarity=0.083 Sum_probs=52.3
Q ss_pred hHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHH-----HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhCch
Q 008806 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPA 197 (553)
Q Consensus 125 ~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~l~~ll~d-~~~~Vr~~a~~~l~~l~~~~~~~ 197 (553)
+.+..+.+-+++.++.+...++.++..++.+++.... ..++..+..++.. .++.||..+...+..+...++.+
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4555666666777788888888888888888877633 4455556665554 56788888888888888777654
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=87.47 E-value=9.3 Score=30.25 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhh
Q 008806 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (553)
Q Consensus 359 l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~ 428 (553)
.+..+.+-++..++.+...|+..|..+++..|.... ...++..+..++...+..||..++..+...+..+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 345555556666666666666666666666655432 1333444444433344455555555555444443
No 129
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.83 E-value=5.2 Score=32.12 Aligned_cols=74 Identities=7% Similarity=-0.015 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhcCCCcchhhhHhhhhHhhcCCCChHHH-----HHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHh
Q 008806 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQD------DMPMVRRSAASNLGKFAA 192 (553)
Q Consensus 124 ~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~l~~ll~d------~~~~Vr~~a~~~l~~l~~ 192 (553)
...+..+.+-+++.++.+...++.++..+..++|.... .+++..+.+++.+ .++.||..+...+...+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34566666667778888888888888888888887632 4567777777764 478899999999999888
Q ss_pred hhCch
Q 008806 193 TVEPA 197 (553)
Q Consensus 193 ~~~~~ 197 (553)
.++.+
T Consensus 127 ~f~~~ 131 (149)
T 3g2s_A 127 GLPEE 131 (149)
T ss_dssp HCTTC
T ss_pred HhCCC
Confidence 77653
No 130
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=86.76 E-value=16 Score=32.13 Aligned_cols=72 Identities=14% Similarity=0.095 Sum_probs=50.8
Q ss_pred chhhcchhHHHhhhcc-chhHHHHHHHHHHHHHHhhcChhhh----hhhHHHHHHHHhcCCCcchhhhHhhhhHhhc
Q 008806 82 EHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDL----VDWYIPLVKRLAAGEWFTARVSACGLFHIAY 153 (553)
Q Consensus 82 ~~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~~~~~~~~~r~~~~~~l~~l~ 153 (553)
+..-.+.|++..-.++ +-+..|-.++.+++.+.+.-+++.+ ..+++|++.+..+..+.-.|..|.-++..+.
T Consensus 97 ~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 97 HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 3455678887665443 4578899999999999987544332 3568899988887777777777777666554
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.20 E-value=12 Score=30.05 Aligned_cols=74 Identities=5% Similarity=-0.012 Sum_probs=60.1
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhH----HHHHHHHHHHccC------CchHHHHHHHHHHHHHHH
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~----~~l~~~l~~~l~D------~~~~VR~~a~~~l~~l~~ 465 (553)
...+..|..-+.++|..+...++..+..+++.+|..+.. ..++..+.+++.+ ....||..++..+.....
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 456667777778999999999999999999999987532 4577777787765 467899999999999999
Q ss_pred HhCh
Q 008806 466 EFGP 469 (553)
Q Consensus 466 ~~~~ 469 (553)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 8864
No 132
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=84.44 E-value=25 Score=32.34 Aligned_cols=182 Identities=8% Similarity=0.024 Sum_probs=106.9
Q ss_pred hhHHHHHHHhhhCCChhHHHHHHHHHHHhhcc-CCcc-h------hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 008806 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LEPQ-D------CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272 (553)
Q Consensus 201 ~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~~~-~------~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~~ 272 (553)
+.++..+...+..-+.+.|..+...+..+... .+.. . ..+.++..+....++++-.. ..|.+...+
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl------~~G~mLRec 150 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL------NCGIMLREC 150 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH------HHHHHHHHH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh------HHHHHHHHH
Confidence 34555555556666777777777777666553 2211 0 02345566666555554211 112221111
Q ss_pred C-CCc-----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHH---HHHhHHHHHHHhccCCcHHHHHHHH
Q 008806 273 G-PEP-----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PEL---AIQHILPCVKELSSDSSQHVRSALA 340 (553)
Q Consensus 273 ~-~~~-----~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~---~~~---~~~~l~~~l~~l~~d~~~~vr~~~~ 340 (553)
- .+. .....+--+.+....++.+|-..|..++..+..... .+. -.+.+...+..+++++|+-+|...+
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 0 000 001122345567788889998888888877655311 110 0234556667788999999999999
Q ss_pred HHHHhhhhhhCHHhH------HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhh
Q 008806 341 SVIMGMAPLLGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (553)
Q Consensus 341 ~~l~~l~~~~~~~~~------~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~ 388 (553)
+.++.+.-.-....+ ...-+.++..+|+|.+..++..|...+..++..
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 999988642111111 234467788899999999999998888887753
No 133
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.00 E-value=15 Score=29.40 Aligned_cols=74 Identities=8% Similarity=0.001 Sum_probs=59.8
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhH----HHHHHHHHHHccC------CchHHHHHHHHHHHHHHH
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~----~~l~~~l~~~l~D------~~~~VR~~a~~~l~~l~~ 465 (553)
...+..+..-++++|..+...++..+..+++.+|..+.. ..++..+.+++.+ ....||..++..+.....
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455666777778999999999999999999999986532 4577777777764 367999999999999998
Q ss_pred HhCh
Q 008806 466 EFGP 469 (553)
Q Consensus 466 ~~~~ 469 (553)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8864
No 134
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=83.92 E-value=17 Score=29.93 Aligned_cols=74 Identities=7% Similarity=0.003 Sum_probs=59.0
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhH----HHHHHHHHHHccC------CchHHHHHHHHHHHHHHH
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE 465 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~----~~l~~~l~~~l~D------~~~~VR~~a~~~l~~l~~ 465 (553)
...+..|..-++++|..+...++..+..+++.+|..+.. ..++..+.+++.. ....||..+++.+.....
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455667777778899999999999999999999876532 4566677777653 457999999999999999
Q ss_pred HhCh
Q 008806 466 EFGP 469 (553)
Q Consensus 466 ~~~~ 469 (553)
.++.
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 8864
No 135
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=80.36 E-value=20 Score=28.93 Aligned_cols=74 Identities=11% Similarity=0.161 Sum_probs=55.8
Q ss_pred hhHHHHHHHhhc-CCCcHHHHHHHHHHHHHHhhhChhhhH----HHHHHH-HHHHcc---CCchHHHHHHHHHHHHHHHH
Q 008806 396 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGAL-CMQWLQ---DKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 396 ~~ll~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~~~----~~l~~~-l~~~l~---D~~~~VR~~a~~~l~~l~~~ 466 (553)
...+..|..-++ ++|..+...++..+..+++.+|..+.. ..++.. +.+++. ++...||..+++.+......
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 455666666666 578899999999999999999986533 346665 556653 34568999999999999988
Q ss_pred hCh
Q 008806 467 FGP 469 (553)
Q Consensus 467 ~~~ 469 (553)
++.
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 763
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.85 E-value=23 Score=28.81 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=34.6
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHHHHhhcC-CCcHHHHHHHHHHHHHHhhh
Q 008806 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQL 428 (553)
Q Consensus 360 ~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~ 428 (553)
+..+.+-++..++.|...|+..|..+++..|.... ...++..+..++.. .+..||..++..+...+..+
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 44455555566666666666666666666554331 13333334333332 23445555555554444443
No 137
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=79.66 E-value=42 Score=31.70 Aligned_cols=208 Identities=12% Similarity=0.123 Sum_probs=118.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--h----CCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh-hCHHH-HHHhHHH
Q 008806 251 QDKSWRVRYMVANQLYELCEA--V----GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-LNPEL-AIQHILP 322 (553)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~--~----~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~-~~~~~-~~~~l~~ 322 (553)
.|++|..-..+.+.+..+... + ........++--++.++..+|+.-|...-..|.++... .+-.. +...+..
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899888888888777653 2 23334456788888899999999998777777665443 22221 1222333
Q ss_pred HHHHhccCCcHH-HHHHHHHHHHhhhhhhC---HHhHHHhHHHHHHHhhCCCChHH-HHHHHHHHHHhhhhhchhhHHhh
Q 008806 323 CVKELSSDSSQH-VRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQS 397 (553)
Q Consensus 323 ~l~~l~~d~~~~-vr~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~V-R~~a~~~l~~~~~~~~~~~~~~~ 397 (553)
.+.++..+.... --..+++.++.+...+. ++.....+...+..+.+.....+ -.....++..+++. + ..+...
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-D-p~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-D-STLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH-C-GGGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc-C-chhHHH
Confidence 334443322211 11245666666666554 22223333444444444433222 12233344434331 1 122345
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHH---HHHHccCCchHHHHHHHHHH
Q 008806 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYSIRDAAANNL 460 (553)
Q Consensus 398 ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l~D~~~~VR~~a~~~l 460 (553)
++..+...+--.+..-....+.-+..+...++++.+.....|. +-++++.+...|-+.|+..+
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 5555666665566666677888888888888888776544443 44567788888888887765
No 138
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=79.54 E-value=30 Score=29.95 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=62.5
Q ss_pred hccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHH
Q 008806 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI 402 (553)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l 402 (553)
.+.+++|..-..++..+.. ...| ....+..+.+-++..++.|...|+..|..++++-|.... ...++..|
T Consensus 20 ~~~~~dw~~ileicD~I~~--~~~~----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l 93 (226)
T 3zyq_A 20 LLLETDWESILQICDLIRQ--GDTQ----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEEL 93 (226)
T ss_dssp TCSSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhC--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHH
Confidence 4456778776566655542 1112 233566677777888888988899888888888776432 24455555
Q ss_pred HHhhcC-CCcHHHHHHHHHHHHHHhhhCh
Q 008806 403 VELAED-RHWRVRLAIIEYIPLLASQLGV 430 (553)
Q Consensus 403 ~~~~~d-~~~~vR~~~~~~l~~i~~~~~~ 430 (553)
..+++. .+..||..++..+...+..+..
T Consensus 94 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 94 KDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 555432 4567777777777777765543
No 139
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=78.76 E-value=18 Score=29.22 Aligned_cols=74 Identities=8% Similarity=0.075 Sum_probs=51.7
Q ss_pred hhHHHHHHHHhc-CCCcchhhhHhhhhHhhcCCCChHHH-----HHHHHH-HHHhcC---CCCHHHHHHHHHHHHHHHhh
Q 008806 124 DWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDILK-----TELRSI-YTQLCQ---DDMPMVRRSAASNLGKFAAT 193 (553)
Q Consensus 124 ~~~l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~l~~~-l~~ll~---d~~~~Vr~~a~~~l~~l~~~ 193 (553)
.+.+..+.+-++ ..++.+...|+.++..+..++|.... .+++.. +.+++. ++...||+.+...+...+..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 345556666565 46778888889999999888887633 345554 555553 34568999999999888887
Q ss_pred hCch
Q 008806 194 VEPA 197 (553)
Q Consensus 194 ~~~~ 197 (553)
++.+
T Consensus 132 f~~~ 135 (157)
T 1elk_A 132 FRSS 135 (157)
T ss_dssp HTTC
T ss_pred cCCC
Confidence 7643
No 140
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=76.19 E-value=58 Score=31.45 Aligned_cols=209 Identities=13% Similarity=0.062 Sum_probs=102.0
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChH------HHhhhhhhhhhhcCC--CcHHHHHHHHHHhhccccccCCcc
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEE------RTRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGGVE 82 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~------~~~~~ll~~l~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~ 82 (553)
+..|++.+.|+|+..|...-..|..+...+... ...+.+..++-+... .-.+.-......+..++.-+. +.
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLK-ee 242 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK-EE 242 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCC-HH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCc-HH
Confidence 667889999999999988888887776544321 112333444433222 223333333333333322121 22
Q ss_pred hh----hcchhHHHhhhccch-hHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcC---CCcchhhhHhhhhHhhcC
Q 008806 83 HA----HVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG---EWFTARVSACGLFHIAYP 154 (553)
Q Consensus 83 ~~----~~l~~~l~~l~~~~~-~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~---~~~~~r~~~~~~l~~l~~ 154 (553)
+. ..++|+... .. ...-..-..++..+++.-+ ... -+.+..++.. .+..-...-+.-+..+.+
T Consensus 243 hk~fl~~vLlPLhk~----~~l~~y~~qL~ycv~qf~eKDp--~L~---~~vi~~LLk~WP~tns~KevlFL~eleeile 313 (449)
T 2npp_B 243 HKIFLLKVLLPLHKV----KSLSVYHPQLAYCVVQFLEKDS--TLT---EPVVMALLKYWPKTHSPKEVMFLNELEEILD 313 (449)
T ss_dssp HHHHHHHTTGGGGGS----SCGGGTHHHHHHHHHHHHHHCG--GGH---HHHHHHHHHTCCSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcc----chhHHhHHHHHHHHHHHHhcCc--HhH---HHHHHHHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 22 334444322 11 1112233344444444321 111 1222222222 111122234445666777
Q ss_pred CCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHhhhCchhhhhhHHHHHHHhhh-----CCChhHHHHHH
Q 008806 155 SAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGK--FAATVEPAHLKTDIMSIFEDLTQ-----DDQDSVRLLAV 223 (553)
Q Consensus 155 ~~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~--l~~~~~~~~~~~~l~p~l~~~~~-----d~~~~vr~~a~ 223 (553)
..+++ ....++..+.+++++++..|-+.|+....+ +...+. .....++|.+...+. +=+..||..+.
T Consensus 314 ~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~--~n~~~IlPii~p~L~~~s~~HWn~~V~~la~ 391 (449)
T 2npp_B 314 VIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNAAKILPIMFPSLYRNSKTHWNKTIHGLIY 391 (449)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTHHHHHHHHHHHHTSCTTCCSSTTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH--hchhhhHHhhHHHHHHHHHHhcCHHHHHHHH
Confidence 77666 345677888888999999998888754321 111111 112345565544332 22456888777
Q ss_pred HHHHHhhc
Q 008806 224 EGCAALGK 231 (553)
Q Consensus 224 ~~l~~l~~ 231 (553)
.++..+.+
T Consensus 392 ~vlk~l~e 399 (449)
T 2npp_B 392 NALKLFME 399 (449)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 77765553
No 141
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=69.70 E-value=77 Score=30.05 Aligned_cols=211 Identities=13% Similarity=0.048 Sum_probs=101.9
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhhChHH------HhhhhhhhhhhcCC--CcHHHHHHHHHHhhccccccCCcc
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEER------TRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGGVE 82 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~~~------~~~~ll~~l~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~ 82 (553)
+..|++.+.|+|+..|...-..|-.+.......+ ..+.+..++-+... .-.+.-......+..++.-+.. .
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke-e 209 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE-E 209 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH-H
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH-H
Confidence 6678899999999999888777777654443211 12333444333221 2233333333333333322222 2
Q ss_pred h----hhcchhHHHhhhccchhHHHHHHHHHHHHHHhhcChhhhhhhHHHHHHHHhcC---CCcchhhhHhhhhHhhcCC
Q 008806 83 H----AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG---EWFTARVSACGLFHIAYPS 155 (553)
Q Consensus 83 ~----~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~~~~---~~~~~r~~~~~~l~~l~~~ 155 (553)
+ ...++|+...-. -...-..-..++..+++.-+ .. ..+.+..+++. .+..-...-+.-+..+.+.
T Consensus 210 hk~fl~~vLlPLHk~~~---~~~y~~qL~ycv~qf~eKDp--~L---~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~ 281 (403)
T 3fga_B 210 HKIFLLKVLLPLHKVKS---LSVYHPQLAYCVVQFLEKDS--TL---TEPVVMALLKYWPKTHSPKEVMFLNELEEILDV 281 (403)
T ss_dssp HHHHHHHTTTGGGGSTT---GGGTHHHHHHHHHHHHHHCG--GG---HHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCc---chhhHHHHHHHHHHHHHhCc--hh---HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHh
Confidence 2 233444432210 01112233444444444322 11 12222222322 1122223344456667777
Q ss_pred CChH----HHHHHHHHHHHhcCCCCHHHHHHHHHHH-----HHHHhhhCchhhhhhHHHHHHHhhh-CCChhHHHHHHHH
Q 008806 156 APDI----LKTELRSIYTQLCQDDMPMVRRSAASNL-----GKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEG 225 (553)
Q Consensus 156 ~~~~----~~~~l~~~l~~ll~d~~~~Vr~~a~~~l-----~~l~~~~~~~~~~~~l~p~l~~~~~-d~~~~vr~~a~~~ 225 (553)
.+++ ....++..+..++.+++..|.+.|.... ..+... ..+.+...++|.+.+..+ +=+..||..+..+
T Consensus 282 ~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~-n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~v 360 (403)
T 3fga_B 282 IEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD-NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNA 360 (403)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT-THHHHHHHHHHHHHHTTSCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH-hHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7665 3456777888888999999988877543 222211 112233333343433222 2255677777777
Q ss_pred HHHhhc
Q 008806 226 CAALGK 231 (553)
Q Consensus 226 l~~l~~ 231 (553)
+..+.+
T Consensus 361 lk~l~e 366 (403)
T 3fga_B 361 LKLFME 366 (403)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666554
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.26 E-value=61 Score=27.78 Aligned_cols=74 Identities=9% Similarity=0.099 Sum_probs=55.7
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhH----HHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCh
Q 008806 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP 469 (553)
Q Consensus 396 ~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~----~~l~~~l~~~l~-D~~~~VR~~a~~~l~~l~~~~~~ 469 (553)
...+..|..-++++|..+...++..+..+++.+|..+.. ..++..+..++. .+...||..+++.+......++.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 445566777778899999999999999999988875422 335555555554 45679999999999999988763
No 143
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=62.51 E-value=1.1e+02 Score=29.42 Aligned_cols=237 Identities=11% Similarity=0.126 Sum_probs=129.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHH--hCC----CccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHHH-HHHhHHH
Q 008806 251 QDKSWRVRYMVANQLYELCEA--VGP----EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPEL-AIQHILP 322 (553)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~--~~~----~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~-~~~~-~~~~l~~ 322 (553)
.|++|..-..+.+.|-.+... +.. ......++--++.++..+|+.-|...-..|.++...+ +-.. +...+-.
T Consensus 127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 206 (449)
T 2npp_B 127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206 (449)
T ss_dssp CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467898888888888777643 222 2233457778888899999988887777776654432 3221 1122222
Q ss_pred HHHHhccCCcHH-HHHHHHHHHHhhhhhhC---HHhHHHhHHHHHHHhhCCCChHH-HHHHHHHHHHhhhhhchhhHHhh
Q 008806 323 CVKELSSDSSQH-VRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQS 397 (553)
Q Consensus 323 ~l~~l~~d~~~~-vr~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~V-R~~a~~~l~~~~~~~~~~~~~~~ 397 (553)
.+.++..+...+ --..+++.++.+...+. ++.....+...++.+.+.....+ -.....++..+++. . ..+...
T Consensus 207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-D-p~L~~~ 284 (449)
T 2npp_B 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-D-STLTEP 284 (449)
T ss_dssp HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-C-GGGHHH
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc-C-cHhHHH
Confidence 233333221111 11245566666665543 12223333444444554443322 22333444444432 1 123345
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHH---HHHHHccCCchHHHHHHHHHHH--HHHHHhChhHH
Q 008806 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA---LCMQWLQDKVYSIRDAAANNLK--RLAEEFGPEWA 472 (553)
Q Consensus 398 ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~---~l~~~l~D~~~~VR~~a~~~l~--~l~~~~~~~~~ 472 (553)
++..+....--.+..-....+.-+..+...+++..|.....| .+-.+++.+...|-+.|+..+. .+...+...
T Consensus 285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n-- 362 (449)
T 2npp_B 285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN-- 362 (449)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT--
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhc--
Confidence 566666666666666667788888888888888877654444 4445788899999998887763 233332111
Q ss_pred hhhhhhhhhhhhh---hhcccc
Q 008806 473 MQHITPQKSHVLD---CCQWSL 491 (553)
Q Consensus 473 ~~~i~p~l~~~l~---~~~~~~ 491 (553)
...++|.+...+. ..+|..
T Consensus 363 ~~~IlPii~p~L~~~s~~HWn~ 384 (449)
T 2npp_B 363 AAKILPIMFPSLYRNSKTHWNK 384 (449)
T ss_dssp HHHHHHHHHHHHTSCTTCCSST
T ss_pred hhhhHHhhHHHHHHHHHHhcCH
Confidence 2345555554332 346774
No 144
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=61.37 E-value=1.1e+02 Score=28.95 Aligned_cols=208 Identities=10% Similarity=0.091 Sum_probs=118.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh------CCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHHH-HHHhHHH
Q 008806 251 QDKSWRVRYMVANQLYELCEAV------GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPEL-AIQHILP 322 (553)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~------~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~-~~~~-~~~~l~~ 322 (553)
.|++|..-..+.+.+..+...- ........++--++.++..+|+.-|...-..|.++...+ +-.. +...+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4788998888888887776541 123334457777888999999999987777776654332 2211 1122222
Q ss_pred HHHHhccCCcH-HHHHHHHHHHHhhhhhhCH---HhHHHhHHHHHHHhhCCCChHH-HHHHHHHHHHhhhhhchhhHHhh
Q 008806 323 CVKELSSDSSQ-HVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQS 397 (553)
Q Consensus 323 ~l~~l~~d~~~-~vr~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~V-R~~a~~~l~~~~~~~~~~~~~~~ 397 (553)
.+.++.-+... .--..++..++.+...+.. +.....+...++.+.+.....+ -.....++..+++. . ..+...
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-D-p~L~~~ 251 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-D-STLTEP 251 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-C-GGGHHH
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh-C-chhHHH
Confidence 33333322211 1112456666666665531 1222333444444444443322 23334444444432 1 112345
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHH---HHHHHccCCchHHHHHHHHHH
Q 008806 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA---LCMQWLQDKVYSIRDAAANNL 460 (553)
Q Consensus 398 ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~---~l~~~l~D~~~~VR~~a~~~l 460 (553)
++..+....--.+..-....+.-+..+...+++..|.....| .+-.+++.+...|-+.|+..+
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 555566666666767777788888888888888777654444 334567888899988888776
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=58.98 E-value=1.1e+02 Score=28.12 Aligned_cols=119 Identities=8% Similarity=0.020 Sum_probs=63.1
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhhhhh-chhhH--HhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChh--hhHH
Q 008806 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDD 435 (553)
Q Consensus 361 p~l~~~l~d~~~~VR~~a~~~l~~~~~~~-~~~~~--~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--~~~~ 435 (553)
..+.....+.+.+....++.+|..+.... |-+.+ ....+..+..+..+.+..+-+.++..+..+....... .+..
T Consensus 163 ~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~ 242 (339)
T 3dad_A 163 SCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIR 242 (339)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHH
Confidence 34444445555566666666666655431 21111 1334455555555555556566666665555443111 0100
Q ss_pred H-----------HHHHHHHHcc---CCchHHHHHHHHHHHHHHHHhChhHHhhhhhhh
Q 008806 436 K-----------LGALCMQWLQ---DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 479 (553)
Q Consensus 436 ~-----------l~~~l~~~l~---D~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~p~ 479 (553)
. .++.++..++ ..+.++...|+..+..+....+.+.....+...
T Consensus 243 av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~ 300 (339)
T 3dad_A 243 AVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDA 300 (339)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 0 1345666776 467888999988888888876644322344433
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=56.62 E-value=80 Score=25.78 Aligned_cols=98 Identities=10% Similarity=0.075 Sum_probs=68.8
Q ss_pred hccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHH
Q 008806 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI 402 (553)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l 402 (553)
.+.+++|..-..++..+..=.. | ....+..+.+-++..++.|...|+..|..+++..|.... ...++..|
T Consensus 25 ~l~~~Dw~~ileicD~I~~~~~--~----~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 25 SNRQEDWEYIIGFCDQINKELE--G----PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp TCSSCCHHHHHHHHHHHHHSTT--H----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCc--c----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 3456788775555555443211 1 233566677788888999999999999999998876542 25667777
Q ss_pred HHhhcC------CCcHHHHHHHHHHHHHHhhhCh
Q 008806 403 VELAED------RHWRVRLAIIEYIPLLASQLGV 430 (553)
Q Consensus 403 ~~~~~d------~~~~vR~~~~~~l~~i~~~~~~ 430 (553)
..++.. .+..||..++..+...+..++.
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 777652 3578999999999988877654
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.37 E-value=97 Score=26.66 Aligned_cols=97 Identities=13% Similarity=0.225 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH----HHHhHHHHHHH
Q 008806 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPCVKE 326 (553)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~ 326 (553)
.+++|..-..++..+.. + .......+..+.+-++..++.+...|+..|..+.+..|..- ....++..+..
T Consensus 22 ~~~dw~~ileicD~I~~-----~-~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~ 95 (226)
T 3zyq_A 22 LETDWESILQICDLIRQ-----G-DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKD 95 (226)
T ss_dssp SSCCHHHHHHHHHHHHT-----T-SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHH
Confidence 45677654444444321 1 22234677788888888889998888888888887766431 01122223333
Q ss_pred hcc-CCcHHHHHHHHHHHHhhhhhhCHH
Q 008806 327 LSS-DSSQHVRSALASVIMGMAPLLGKD 353 (553)
Q Consensus 327 l~~-d~~~~vr~~~~~~l~~l~~~~~~~ 353 (553)
++. ..+..||..++..+...+..+..+
T Consensus 96 l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 96 LLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 322 345677777777777777665443
No 148
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=55.65 E-value=2.1e+02 Score=30.20 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=63.4
Q ss_pred HHHHHhcCccHHHHHHHhhhHHHHHHhhCh---HHHhhhhhhhhhh-cCC---CcHHHHHHHHHHhhccccccC-Ccchh
Q 008806 13 VLIDELKNDDIQLRLNSIRRLSTIARALGE---ERTRKELIPFLSE-NND---DDDEVLLAMAEELGVFIPYVG-GVEHA 84 (553)
Q Consensus 13 ~ll~~L~~~d~~~R~~a~~~l~~i~~~~~~---~~~~~~ll~~l~~-~~d---~~~~vr~~~~~~l~~l~~~~~-~~~~~ 84 (553)
.++.++.|.+..+...+..+++.++ .+.| +...+.++..+-. +.. .++.-..++..++..+++.+- ...+.
T Consensus 343 ~~~~g~fSK~~~~~~~~~~~l~~La-~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr 421 (799)
T 1vsy_4 343 IISLGSQNKNPDIANYYISCFAYLL-ELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYR 421 (799)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGG
T ss_pred HHHHHhCcCCcchHHHHHHHHHHHH-hcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccH
Confidence 3446778999999988999999886 4556 6555555554444 333 333333445577777765332 23455
Q ss_pred hcchhHHHhhhc--cc-hhHHHHHHHHHHHHHHhhcC
Q 008806 85 HVLLPPLETLCT--VE-ETCVRDKAVESLCRIGSQMR 118 (553)
Q Consensus 85 ~~l~~~l~~l~~--~~-~~~vR~~a~~~l~~l~~~~~ 118 (553)
..+.+++..++. |. |..--..++..+..++..++
T Consensus 422 ~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 422 VHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp GHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 666776655432 43 34434467777777776554
No 149
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=55.40 E-value=77 Score=25.17 Aligned_cols=98 Identities=9% Similarity=0.034 Sum_probs=69.3
Q ss_pred hccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHH
Q 008806 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI 402 (553)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l 402 (553)
.+.+++|..-..++..+..=. .| ....+..+.+-++..++.+...|+..|..+++..|.... ...++..|
T Consensus 13 ~l~~~dw~~~leicD~I~~~~--~~----~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL 86 (148)
T 1mhq_A 13 SMSEQDWSAIQNFCEQVNTDP--NG----PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 86 (148)
T ss_dssp TCSSCCHHHHHHHHHHHHHSS--HH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCC--cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 345678876555555444321 11 233466677778889999999999999999999887542 36677778
Q ss_pred HHhhcC------CCcHHHHHHHHHHHHHHhhhCh
Q 008806 403 VELAED------RHWRVRLAIIEYIPLLASQLGV 430 (553)
Q Consensus 403 ~~~~~d------~~~~vR~~~~~~l~~i~~~~~~ 430 (553)
..++.+ .+..||..++..+...+..++.
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 87 IKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 877764 3678999999999888877654
No 150
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=54.65 E-value=73 Score=24.72 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=49.5
Q ss_pred CHHHHHHhHHHHHHHhccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhch
Q 008806 312 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (553)
Q Consensus 312 ~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~ 391 (553)
+.+.. ..++|.+...++|.||.+...++..+..+. +.++|.+.+.++..+..=+.-.+. .++..+..
T Consensus 25 ~~~~i-~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~ywil~---~lv~~~~~ 91 (134)
T 3ut4_A 25 IDNEI-EPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYWVIK---LMIPYLIY 91 (134)
T ss_dssp CHHHH-HHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHHHHH---HHGGGCCH
T ss_pred CHHHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHHHHH---HHHHcCCH
Confidence 44443 556778888888999988877777666543 235666666666555544443332 22333322
Q ss_pred hhHHhhHHHHHHHhhcCC
Q 008806 392 DLLSQSLLPAIVELAEDR 409 (553)
Q Consensus 392 ~~~~~~ll~~l~~~~~d~ 409 (553)
+ ....+.|.|..++..+
T Consensus 92 ~-~~~~l~~eL~rl~~~p 108 (134)
T 3ut4_A 92 P-NKQLVKSELERLSSLE 108 (134)
T ss_dssp H-HHHHHHHHHHHHHTCC
T ss_pred H-HHHHHHHHHHHHHhCC
Confidence 2 2356667777776654
No 151
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=51.36 E-value=1.5e+02 Score=27.17 Aligned_cols=154 Identities=14% Similarity=0.238 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHhh-CHHHHHHhHHHHHHH-hccC--------CcHHHHHHHHHHHHhhhhhhCHHh--HHHhHHHH
Q 008806 295 EVRIAAAGKVTKFCRIL-NPELAIQHILPCVKE-LSSD--------SSQHVRSALASVIMGMAPLLGKDA--TIEQLLPI 362 (553)
Q Consensus 295 ~vr~~a~~~l~~~~~~~-~~~~~~~~l~~~l~~-l~~d--------~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~p~ 362 (553)
.+|+..++-+..+.+.. +.+.+.+.++|.+.. .+.| .++.|-......+..+...+.+.. ..+.+...
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~ 123 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFEC 123 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56666666666655433 233334455555432 2222 345665555656666655544431 11222222
Q ss_pred HHHhhC---CCChHHHHHHHHHHHHhhhh-------hchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhC--h
Q 008806 363 FLSLLK---DEFPDVRLNIISKLDQVNQV-------IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V 430 (553)
Q Consensus 363 l~~~l~---d~~~~VR~~a~~~l~~~~~~-------~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~--~ 430 (553)
-..+++ ++.|+-|..-.+.|..+... ++++.+ ..++..+....++++..+-..++..+-.+...++ +
T Consensus 124 TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f-klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~ 202 (321)
T 1w9c_A 124 TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF-KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEE 202 (321)
T ss_dssp HHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCh
Confidence 233444 36799999999988888754 233433 6788888899999999999999988888877664 2
Q ss_pred ----hhhHHH---HHHHHHHHccCCc
Q 008806 431 ----GFFDDK---LGALCMQWLQDKV 449 (553)
Q Consensus 431 ----~~~~~~---l~~~l~~~l~D~~ 449 (553)
.++..+ ++..++..++|+.
T Consensus 203 ~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 203 AAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 223333 3334445667754
No 152
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=49.46 E-value=90 Score=24.23 Aligned_cols=84 Identities=8% Similarity=-0.139 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhCchhhhhhHHHHHHHhhhCCChhHHHHHHHHHHHhhccCCcc
Q 008806 157 PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 236 (553)
Q Consensus 157 ~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (553)
+.+....+++.+..-++|.+|.+...++..|..+. +.+.|.+.+.++.+|..=+.. .+..+...++.+
T Consensus 25 ~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~yw---il~~lv~~~~~~ 92 (134)
T 3ut4_A 25 IDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKYW---VIKLMIPYLIYP 92 (134)
T ss_dssp CHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHHH---HHHHHGGGCCHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHHH---HHHHHHHcCCHH
Confidence 55567778888888899999998888877776543 255666666665555443322 333444444443
Q ss_pred hhhhchHHHHHHhcCCC
Q 008806 237 DCVAHILPVIVNFSQDK 253 (553)
Q Consensus 237 ~~~~~ll~~l~~l~~d~ 253 (553)
....+.|.+.+++..+
T Consensus 93 -~~~~l~~eL~rl~~~p 108 (134)
T 3ut4_A 93 -NKQLVKSELERLSSLE 108 (134)
T ss_dssp -HHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHHHHhCC
Confidence 3345666666666543
No 153
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=49.14 E-value=1.4e+02 Score=26.28 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=13.6
Q ss_pred HHccCCchHHHHHHHHHHHHHHHH
Q 008806 443 QWLQDKVYSIRDAAANNLKRLAEE 466 (553)
Q Consensus 443 ~~l~D~~~~VR~~a~~~l~~l~~~ 466 (553)
.+..++++.+-+..+++.-++.++
T Consensus 202 ~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 202 QLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCChHHHHHHHHHHHHHhcC
Confidence 344556666666666666555544
No 154
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=48.15 E-value=54 Score=25.74 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=46.9
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHHHhhhChhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhChhH
Q 008806 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 471 (553)
Q Consensus 402 l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~~~~ 471 (553)
+.+..++.+|..=...+.=|..+...... .+...+++.+++-++++.+.|+..+++.|..++.+-++.+
T Consensus 16 V~~ATs~d~~~~pgylm~EIA~~T~~s~~-~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f 84 (140)
T 1vdy_A 16 IDAVTSDEDKVAPVYKLEEICDLLRSSHV-SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEF 84 (140)
T ss_dssp HHHTTCSCSSCCCHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHH
Confidence 44566666676555544444444322222 2335789999999999999999999999999997655444
No 155
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=47.76 E-value=79 Score=24.80 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Q 008806 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (553)
Q Consensus 161 ~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~ 192 (553)
..++++.+.+-++++++.|...+++.|..++.
T Consensus 47 ~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~ 78 (140)
T 1vdy_A 47 VKEFSEFILKRLDNKSPIVKQKALRLIKYAVG 78 (140)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCcceeehHHHHHHHHHH
Confidence 46677777777777777777777666666654
No 156
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=46.14 E-value=1.5e+02 Score=25.69 Aligned_cols=69 Identities=6% Similarity=-0.007 Sum_probs=47.9
Q ss_pred HHHHHHHhhhCCChhHHHHHHH----HHHHhhccCCcchhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 008806 203 IMSIFEDLTQDDQDSVRLLAVE----GCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (553)
Q Consensus 203 l~p~l~~~~~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vR~~~~~~l~~l~~~ 271 (553)
..+.+.....+++.-+|..++. .+..+...-..+...+.++..+...+.|....|+.++..+|..++..
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 4455566678888888887776 44442211112344566788888888999999999999999888765
No 157
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=45.12 E-value=66 Score=27.93 Aligned_cols=69 Identities=6% Similarity=-0.036 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCcchhhhHhh----hhHhhc-CCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh
Q 008806 126 YIPLVKRLAAGEWFTARVSACG----LFHIAY-PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194 (553)
Q Consensus 126 ~l~~l~~~~~~~~~~~r~~~~~----~l~~l~-~~~~~~~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~ 194 (553)
..+.+...+.|++.-.|..+.. ++.... ........+.++..+...+.|++..|++++..+|..++...
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 4566677777766545555544 444422 12244577888888888899999999999999988777653
No 158
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=41.63 E-value=3.4e+02 Score=28.60 Aligned_cols=298 Identities=8% Similarity=0.000 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhC--chhhhhhHHHHHHHhhhC---CChhHHHHHHHHHHHhhccCC
Q 008806 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE--PAHLKTDIMSIFEDLTQD---DQDSVRLLAVEGCAALGKLLE 234 (553)
Q Consensus 160 ~~~~l~~~l~~ll~d~~~~Vr~~a~~~l~~l~~~~~--~~~~~~~l~p~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~ 234 (553)
.++.++|.+...+.+++..+...+..++..++-.-+ ++.+.+.++..+...++. .+..--.++++++..++..+-
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 445667777788889999999999999999886444 155555555555555555 334444556788887776533
Q ss_pred c-chhhhchHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHhCCCccc---c------chHHHHHHhcC-----------
Q 008806 235 P-QDCVAHILPVIVNF---SQDKSWRVRYMVANQLYELCEAVGPEPTR---M------DLVPAYVRLLR----------- 290 (553)
Q Consensus 235 ~-~~~~~~ll~~l~~l---~~d~~~~vR~~~~~~l~~l~~~~~~~~~~---~------~llp~l~~ll~----------- 290 (553)
. ..+..++.|.+..+ ++-.++.--..+.+.+..++..++-.... + ...|.+.+.+.
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTF 495 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSC
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccc
Confidence 2 34455666666554 34455555556677777777765422110 1 11222222211
Q ss_pred --CCcHHHHHHHHHHHHHHHHhhCHHHHHHhHHHHHHHhcc-CCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhh
Q 008806 291 --DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367 (553)
Q Consensus 291 --d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l 367 (553)
|.+.+ ..++. .... +=+.+...++..+..+++ +.+..+-......+..+...+.++.+ +.++..+.+..
T Consensus 496 ~~d~~~~--~~~~~---~sT~--~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if-~~~l~k~~~fv 567 (799)
T 1vsy_4 496 RVDDELL--NNAFK---ASTT--VFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIF-NYFASLLNRNF 567 (799)
T ss_dssp CCCTTHH--HHHHH---HHTS--THHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHH-HHHHHHHHHHH
T ss_pred cccHHHH--HHHHH---HHHh--hHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHH
Confidence 11111 11111 1011 112334455555555554 33344445566666667766776643 23344444433
Q ss_pred CCCCh-HHHHHHHHH----HHHhhhhhchhhHHhhHHHHHHHhh----cCC------------CcHHHHHHHHHHHHHHh
Q 008806 368 KDEFP-DVRLNIISK----LDQVNQVIGIDLLSQSLLPAIVELA----EDR------------HWRVRLAIIEYIPLLAS 426 (553)
Q Consensus 368 ~d~~~-~VR~~a~~~----l~~~~~~~~~~~~~~~ll~~l~~~~----~d~------------~~~vR~~~~~~l~~i~~ 426 (553)
.+... ......... +..++.. .++ ..+.++|.+.... ++. ....-...+..++.+..
T Consensus 568 ~~n~~~~a~~~v~~L~~~~~~a~~~~-~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~ 645 (799)
T 1vsy_4 568 WSNDSFKEKDPNYELVTIPLAALVRR-NNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLR 645 (799)
T ss_dssp HSCSCCCSSSCCTHHHHHHHHHHHHH-CGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHT
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHh-CHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHh
Confidence 22211 111111111 2223332 333 2345555554221 111 11111234455555555
Q ss_pred hhChh--hhHHHHHHHHHHHc-cCCchHHHHHHHHHHHHHHHHh
Q 008806 427 QLGVG--FFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEF 467 (553)
Q Consensus 427 ~~~~~--~~~~~l~~~l~~~l-~D~~~~VR~~a~~~l~~l~~~~ 467 (553)
..|.. .+.+.+...+..++ +.+...+-..+...+..+...+
T Consensus 646 ~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 646 NCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALATL 689 (799)
T ss_dssp TTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHHH
T ss_pred cCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh
Confidence 55655 35566777666555 3455555577888888777664
No 159
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=39.17 E-value=1.4e+02 Score=23.81 Aligned_cols=22 Identities=0% Similarity=-0.023 Sum_probs=14.4
Q ss_pred chhHHHHHHHHHHHHHHhhcCh
Q 008806 98 EETCVRDKAVESLCRIGSQMRE 119 (553)
Q Consensus 98 ~~~~vR~~a~~~l~~l~~~~~~ 119 (553)
....||..+++.+......+..
T Consensus 113 ~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 113 LPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp CCHHHHHHHHHHHHHHHTCCSS
T ss_pred CcHHHHHHHHHHHHHHHHHhCC
Confidence 3446777777777777766654
No 160
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.84 E-value=1.8e+02 Score=24.73 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=65.4
Q ss_pred hccCCcHHHHHHHHHHHHhhhhhhCHHhHHHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhhH----HhhHHHHH
Q 008806 327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI 402 (553)
Q Consensus 327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~ll~~l 402 (553)
.+.+++|..-..++..+..=. .|+ ...+..+.+-++..++.|...|+..|..+++.-|.... ...++..|
T Consensus 17 ~~~~~dw~~~leicd~i~~~~--~~~----k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l 90 (220)
T 1dvp_A 17 LRLEPDWPSILLICDEINQKD--VTP----KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF 90 (220)
T ss_dssp TCSSCCHHHHHHHHHHHHTTS--SCH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHhhcCCC--cCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHH
Confidence 345678877555555554211 122 23455667777888999999999999999888776432 24466666
Q ss_pred HHhhc-CCCcHHHHHHHHHHHHHHhhhCh
Q 008806 403 VELAE-DRHWRVRLAIIEYIPLLASQLGV 430 (553)
Q Consensus 403 ~~~~~-d~~~~vR~~~~~~l~~i~~~~~~ 430 (553)
..++. ..+..||..+++.+...+..+..
T Consensus 91 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 91 SSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 66554 35678999998888888876653
No 161
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=38.28 E-value=2.3e+02 Score=25.81 Aligned_cols=135 Identities=13% Similarity=0.184 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhhhhhCH-HhHHHhHHHHHH-HhhC---CCChHHHHH-HHHHHHHhhhhhchhhH--HhhHHHHHH-
Q 008806 333 QHVRSALASVIMGMAPLLGK-DATIEQLLPIFL-SLLK---DEFPDVRLN-IISKLDQVNQVIGIDLL--SQSLLPAIV- 403 (553)
Q Consensus 333 ~~vr~~~~~~l~~l~~~~~~-~~~~~~l~p~l~-~~l~---d~~~~VR~~-a~~~l~~~~~~~~~~~~--~~~ll~~l~- 403 (553)
..+|...++.+......... +...+.++|.+. ..|. +..+..|+. .+..+..++..+|.... .+.++..+.
T Consensus 43 R~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe 122 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE 122 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44666677776666654332 333444555443 3442 334444432 33444445555543211 022333222
Q ss_pred ---Hhhc---CCCcHHHHHHHHHHHHHHhhhC-------hhhhHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 008806 404 ---ELAE---DRHWRVRLAIIEYIPLLASQLG-------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 468 (553)
Q Consensus 404 ---~~~~---d~~~~vR~~~~~~l~~i~~~~~-------~~~~~~~l~~~l~~~l~D~~~~VR~~a~~~l~~l~~~~~ 468 (553)
++.+ ++.+..|......+..+...+- ++.+ ..++..+.-..+++.++|-..+++++..+..+++
T Consensus 123 ~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f-klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 123 CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF-KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 3333 3568899999999999887643 2333 3456666667889999999999999999998874
No 162
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=32.65 E-value=3e+02 Score=25.32 Aligned_cols=108 Identities=9% Similarity=0.067 Sum_probs=61.3
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhhhhh-CHHhH--HHhHHHHHHHhhCCCChHHHHHHHHHHHHhhhhhchhh--HHh
Q 008806 322 PCVKELSSDSSQHVRSALASVIMGMAPLL-GKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQ 396 (553)
Q Consensus 322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~-~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~--~~~ 396 (553)
..+.....+.+.....-++.++..+..+. |.+.. ...++..+..++...+..|-+.|++.|..++..-.... +.+
T Consensus 163 ~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~ 242 (339)
T 3dad_A 163 SCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIR 242 (339)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHH
Confidence 34444555556667777777777776542 22111 23455666666666777788888888887776542211 111
Q ss_pred h-----------HHHHHHHhhc---CCCcHHHHHHHHHHHHHHhhhC
Q 008806 397 S-----------LLPAIVELAE---DRHWRVRLAIIEYIPLLASQLG 429 (553)
Q Consensus 397 ~-----------ll~~l~~~~~---d~~~~vR~~~~~~l~~i~~~~~ 429 (553)
. ....+..+++ ..+..+...++..+..+....+
T Consensus 243 av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 243 AVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 1234445554 4566677777766666655544
No 163
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=31.97 E-value=2.9e+02 Score=25.09 Aligned_cols=12 Identities=17% Similarity=-0.045 Sum_probs=6.6
Q ss_pred HHHHHccCCchH
Q 008806 440 LCMQWLQDKVYS 451 (553)
Q Consensus 440 ~l~~~l~D~~~~ 451 (553)
.+..++.|+..+
T Consensus 274 ~l~~L~~d~~gn 285 (333)
T 3bwt_A 274 GIQSLLNDSYGN 285 (333)
T ss_dssp HHHHHHTSTTHH
T ss_pred HHHHHHcCChHH
Confidence 445666666543
No 164
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=25.87 E-value=4.2e+02 Score=24.93 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=23.9
Q ss_pred HHHHHHHhcCccHHHHHHHhhhHHHHHHhh
Q 008806 11 IAVLIDELKNDDIQLRLNSIRRLSTIARAL 40 (553)
Q Consensus 11 i~~ll~~L~~~d~~~R~~a~~~l~~i~~~~ 40 (553)
+..|++.+.|+|+..|..-...|..+....
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf 205 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGKF 205 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence 567888999999999988888887775543
No 165
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=25.55 E-value=77 Score=16.35 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=18.1
Q ss_pred CcHHHHHHHhcCccHHHHHHHhhhHHHH
Q 008806 9 YPIAVLIDELKNDDIQLRLNSIRRLSTI 36 (553)
Q Consensus 9 ~~i~~ll~~L~~~d~~~R~~a~~~l~~i 36 (553)
.+++.++..|..++...+....+.++.+
T Consensus 2 dqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788888777777665555555443
No 166
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=25.41 E-value=62 Score=18.38 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH
Q 008806 164 LRSIYTQLCQDDMPMVRRSAASNLG 188 (553)
Q Consensus 164 l~~~l~~ll~d~~~~Vr~~a~~~l~ 188 (553)
+...+.++-.+.++++|++..+++.
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~ 32 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWV 32 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4556667777888888887777653
No 167
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=23.79 E-value=2.7e+02 Score=22.04 Aligned_cols=97 Identities=8% Similarity=0.094 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHH----HHhHHH-HH
Q 008806 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELA----IQHILP-CV 324 (553)
Q Consensus 251 ~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~llp~l~~ll~d-~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~-~l 324 (553)
.+++|..-..+|..+.. . .......+..+.+-+.. .++.+..-|+..|..+.+..|..-. ...++. .+
T Consensus 30 ~~~Dw~~ileicD~In~-----~-~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L 103 (152)
T 3rru_A 30 QTEDWGQFMHICDIINT-----T-QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENL 103 (152)
T ss_dssp CSCCHHHHHHHHHHHHH-----S-TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTT
T ss_pred CCccHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHH
Confidence 34667644444433322 1 11234566777777764 4677777788888888877665310 112232 23
Q ss_pred HHhccC---CcHHHHHHHHHHHHhhhhhhCHH
Q 008806 325 KELSSD---SSQHVRSALASVIMGMAPLLGKD 353 (553)
Q Consensus 325 ~~l~~d---~~~~vr~~~~~~l~~l~~~~~~~ 353 (553)
..++.+ ....||..++..+...+..|+..
T Consensus 104 ~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~ 135 (152)
T 3rru_A 104 VKLLNPRYNLPLDIQNRILNFIKTWSQGFPGG 135 (152)
T ss_dssp GGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSS
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 444443 23579999999888888777653
No 168
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=23.05 E-value=5.9e+02 Score=25.62 Aligned_cols=93 Identities=10% Similarity=-0.055 Sum_probs=0.0
Q ss_pred hchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhCh----------hhhHHHHHHHHHHHccCCchHHHHHHHH
Q 008806 389 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----------GFFDDKLGALCMQWLQDKVYSIRDAAAN 458 (553)
Q Consensus 389 ~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~----------~~~~~~l~~~l~~~l~D~~~~VR~~a~~ 458 (553)
+.+..+.+.-++.+..++++++..+...++..+..+...+.. +.+....-....-....++..+|..|..
T Consensus 309 ~sp~~if~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~ 388 (596)
T 4f52_E 309 LSPLYLLQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLA 388 (596)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHH
Q ss_pred HHHHHHHHhChhHHhhhhhhhhhh
Q 008806 459 NLKRLAEEFGPEWAMQHITPQKSH 482 (553)
Q Consensus 459 ~l~~l~~~~~~~~~~~~i~p~l~~ 482 (553)
+++.+...++.+ .+-.++..|.+
T Consensus 389 vl~~~I~~~~~e-~R~~iL~~LL~ 411 (596)
T 4f52_E 389 MLQLYINKLDSQ-GKYTLFRCLLN 411 (596)
T ss_dssp HHHHHHHHBCHH-HHHHHHHHHHH
T ss_pred HHHHHHHhCChH-HHHHHHHHHHh
No 169
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.72 E-value=3.1e+02 Score=21.47 Aligned_cols=97 Identities=16% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhchhhHHhhHHHHHHHhhcCCCcHHHHHHHHHHHHHHhhhChhh---hHHHHHHHHHHHccCCchHH
Q 008806 376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSI 452 (553)
Q Consensus 376 ~~a~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~---~~~~l~~~l~~~l~D~~~~V 452 (553)
...+..|..++...-... +.+...+.+.+.......+..++..+..|.+..|... |...+.+.+.......+..+
T Consensus 24 k~~I~~LT~~a~~~~~~a--~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~ 101 (144)
T 1sz9_A 24 RPIITTLTKLAEENISCA--QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTT 101 (144)
T ss_dssp HHHHHHHHHHHHHTGGGH--HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHH
T ss_pred HhHHHHHHHHHHHHHHHH--HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHH
Q ss_pred HHHHHHHHHHHHHH-------hChhHHhh
Q 008806 453 RDAAANNLKRLAEE-------FGPEWAMQ 474 (553)
Q Consensus 453 R~~a~~~l~~l~~~-------~~~~~~~~ 474 (553)
|....+.+...-+. ++++...+
T Consensus 102 r~k~~rL~~~W~~~~~~~~~vF~~~~l~~ 130 (144)
T 1sz9_A 102 RTKLINMFKLWLNPNDTGLPLFEGSALEK 130 (144)
T ss_dssp HHHHHHHHHHHTSGGGCSSCSSCHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCCCCCHHHHHH
No 170
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=20.14 E-value=5.1e+02 Score=23.75 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=8.2
Q ss_pred HHhHHHHHHHhccCCc
Q 008806 317 IQHILPCVKELSSDSS 332 (553)
Q Consensus 317 ~~~l~~~l~~l~~d~~ 332 (553)
.+.+.+.+..++.|++
T Consensus 201 i~~l~~~~~~L~~d~~ 216 (351)
T 3gvo_A 201 LEELHQHTEQLVQDQY 216 (351)
T ss_dssp HHHHHTTHHHHHTSTT
T ss_pred HHHHhhhHHhcCCCch
Confidence 3444455555556654
Done!