BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008807
(553 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 190/425 (44%), Gaps = 63/425 (14%)
Query: 101 CYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVXXXXXXX 160
C GCGA +Q GY E + V+C RC L H + + V
Sbjct: 7 CIGCGAAIQFENPKNAGYAPKSVLE-----KDAEEVICQRCFRLKHYNEVQDVP------ 55
Query: 161 XXKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDL 220
+ D+ L + KAL+V +VDI DFNGSF+ + A NPI+LV K DL
Sbjct: 56 -----LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADL 110
Query: 221 LPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGS 280
LP+ + + W+ + L + V L S+ G+ V I + ++G DVY++G
Sbjct: 111 LPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGC 170
Query: 281 ANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPG 340
NVGKS FIN ++++ A + S PGTTL I+I G LYDTPG
Sbjct: 171 TNVGKSTFINRIIEE--------ATGKGNVITTSYFPGTTLDMIEI-PLESGATLYDTPG 221
Query: 341 VHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVISETETNNEFKSHGLNGFTIFWGGLVRI 400
+ HH+ A V A DL + P+ + + + + NE G T+F+GGL R+
Sbjct: 222 IINHHQMAHFVDARDLKIITPKREIHPRVYQL-------NE-------GQTLFFGGLARL 267
Query: 401 DLLKVLPETCLTFYGPKSLQVYMVPTDKADEFYQKELGVTLTPPIGKQKAEGWKGLDRER 460
D +K Y L V+ +KAD Y +LG L+PP + AE + R
Sbjct: 268 DYIKG-GRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYAAEFPPLVPRS- 325
Query: 461 LLEIKFEDTERPASDVAISGLGWISVEPVRRSIRNSDINLESTSGELHLAVHVPKPVEVF 520
L +K ER +D+ SGLGW++ L VH PK V+VF
Sbjct: 326 -LSVK----ER-KTDIVFSGLGWVT----------------CNDPGAQLVVHAPKGVDVF 363
Query: 521 VRNPM 525
+R +
Sbjct: 364 IRQSL 368
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 188/426 (44%), Gaps = 66/426 (15%)
Query: 101 CYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVXXXXXXX 160
C GCG +QT + + GY + E ++ V+C RC L H + I V
Sbjct: 7 CIGCGVEIQTEDKNEVGYAPASSLEKEQ-------VICQRCFRLKHYNEIQDVS------ 53
Query: 161 XXKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDL 220
++ D+ L+ + + AL+VK+VDI DFNGS+L + G N ++LV K DL
Sbjct: 54 -----LTDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADL 108
Query: 221 LPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGS 280
+PK + V W + + L V L S+ GI +A I+ + G+DVY++G
Sbjct: 109 IPKSVKHDKVKHWXRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGC 168
Query: 281 ANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPG 340
NVGKS FIN +K+ + + PGTTL I I LYDTPG
Sbjct: 169 TNVGKSTFINRXIKEFSDETENVITTSHF-------PGTTLDLIDI-PLDEESSLYDTPG 220
Query: 341 VHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVISETETNNEFKSHGLNGFTIFWGGLVRI 400
+ HH+ A V + L + P ++ F + E T+F+ GL R
Sbjct: 221 IINHHQXAHYVGKQSLKLITPTKEIKPXVFQLNEEQ--------------TLFFSGLARF 266
Query: 401 DLLKVLPETCLTFYGPKSLQVYMVPTDKADEFYQKELGVTLTPPIGKQKAEGWKGLDRER 460
D + T + L ++ +KADE Y+ G L+PP ++ +
Sbjct: 267 DYVSG-GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPEELE------NXPE 319
Query: 461 LLEIKFEDTERPASDVAISGLGWISV-EPVRRSIRNSDINLESTSGELHLAVHVPKPVEV 519
L++ +F + P +DV SGLGW++V EP + + HVPK V V
Sbjct: 320 LVKYEF-NIREPKTDVVFSGLGWVTVNEPGAK-----------------IVAHVPKGVSV 361
Query: 520 FVRNPM 525
+R +
Sbjct: 362 SLRKSL 367
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 275 VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK 334
V I+G NVGKS NA+L K R + S +PGTT P+ + F+ G K
Sbjct: 183 VAIVGRPNVGKSTLFNAIL-------------NKERALVSPIPGTTRDPVDDEVFIDGRK 229
Query: 335 --LYDTPGVHLHHR 346
DT G+ R
Sbjct: 230 YVFVDTAGLRRKSR 243
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 175 LSHLRREKALIVKLVDIV----DFNGSFLAR---IRDLAGANPIILVVTKVDLLPKGTDF 227
++ RRE +KL+DIV D +R I D+ P I+++ K D D
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD----KADA 65
Query: 228 NCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGR-----------DVY 276
W E + + LS++ + + L IV + EI +EK R
Sbjct: 66 AVTQQWK-EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRAL 124
Query: 277 ILGSANVGKSAFINALLK----KMGERDPAAAMAQKY 309
I+G NVGKS IN L K K G+R P +Q++
Sbjct: 125 IIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQW 160
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 170 ELREKLSHLRR------EKALIVKLVDIVDFNGSFLARIRDLAGANPI--ILVVTKVDLL 221
E++E+ + L R ++A++V F+ + L R L AN I I+ +TK+DL+
Sbjct: 71 EIKERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 130
Query: 222 PKGTDFNCVGDWVVEATTKKKLNV-LSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGS 280
+ ++A + N+ V+LTSSK + + Q + G
Sbjct: 131 EDQD-----TEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQD----KTTVFAGQ 181
Query: 281 ANVGKSAFINALLKKMGER 299
+ VGKS+ +NA+ ++G R
Sbjct: 182 SGVGKSSLLNAISPELGLR 200
>pdb|2UUR|A Chain A, N-Terminal Nc4 Domain Of Collagen Ix
Length = 245
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 237 ATTKKKLNVLSVHLTSSKSLAGIV--GVASEIQKEKKGRDVYILGSANVGKSAFINALLK 294
+T KK N+ + +S K GI G + KG D + +A S+ ++
Sbjct: 99 STLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQWH 158
Query: 295 KMG---ERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL-HHRQAAV 350
K+ ER A R I+S +P GPI ID F GKL D P V + Q +
Sbjct: 159 KIMIGVERSSATLFVDCNR-IES-LPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWML 216
Query: 351 VHAEDL 356
+H + L
Sbjct: 217 IHCDPL 222
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 30/147 (20%)
Query: 212 ILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271
I+++ KVD+ D WV E K+ V++ H + + + ++ ++
Sbjct: 50 IILLNKVDI----ADEKTTKKWV-EFFKKQGKRVITTHKGEPRKV-----LLKKLSFDRL 99
Query: 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG 331
R V I+G N GKS IN L G+R + A PG T G IQ +
Sbjct: 100 AR-VLIVGVPNTGKSTIINKL---KGKRASSVG----------AQPGITKG-IQWFSLEN 144
Query: 332 GGKLYDTPGVHLHHRQAAVVHAEDLPA 358
G K+ DTPG+ + + +EDL A
Sbjct: 145 GVKILDTPGILYKN-----IFSEDLAA 166
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 270 KKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF 329
+ G V I+G NVGKS+ +N A +Q R I + +PGTT ++
Sbjct: 222 RTGLKVAIVGRPNVGKSSLLN-------------AWSQSDRAIVTDLPGTTRDVVESQLV 268
Query: 330 LGG--GKLYDTPGVH 342
+GG ++ DT G+
Sbjct: 269 VGGIPVQVLDTAGIR 283
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFL 330
+G + I+G NVGKS +N LL + R I + +PGTT I + +
Sbjct: 242 RGLRMVIVGKPNVGKSTLLNRLL-------------NEDRAIVTDIPGTTRDVISEEIVI 288
Query: 331 GG--GKLYDTPGVH 342
G ++ DT GV
Sbjct: 289 RGILFRIVDTAGVR 302
>pdb|2X2Y|A Chain A, Cellulomonas Fimi Endo-Beta-1,4-Mannanase Double Mutant
pdb|2X2Y|B Chain B, Cellulomonas Fimi Endo-Beta-1,4-Mannanase Double Mutant
Length = 475
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 299 RDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLH-------HRQAAVV 351
RD A+ Y A+ G ++ F+ GG YDT G L H V
Sbjct: 87 RDENIALFADYIRKADAIGGVNTVSAHVENFVTGGSFYDTSGDTLRAVLPGGSHHAELVA 146
Query: 352 HAEDLPALAPQSR 364
+ +D+ LA SR
Sbjct: 147 YLDDIAELADASR 159
>pdb|2BVT|A Chain A, The Structure Of A Modular Endo-Beta-1,4-Mannanase From
Cellulomonas Fimi Explains The Product Specificity Of
Glycoside Hydrolase Family 26 Mannanases.
pdb|2BVT|B Chain B, The Structure Of A Modular Endo-Beta-1,4-Mannanase From
Cellulomonas Fimi Explains The Product Specificity Of
Glycoside Hydrolase Family 26 Mannanases.
pdb|2BVY|A Chain A, The Structure And Characterization Of A Modular
Endo-Beta-1, 4-Mannanase From Cellulomonas Fimi
Length = 475
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 299 RDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLH-------HRQAAVV 351
RD A+ Y A+ G ++ F+ GG YDT G L H V
Sbjct: 87 RDENIALFADYIRKADAIGGVNTVSAHVENFVTGGSFYDTSGDTLRAVLPGGSHHAELVA 146
Query: 352 HAEDLPALAPQSR 364
+ +D+ LA SR
Sbjct: 147 YLDDIAELADASR 159
>pdb|1TEX|A Chain A, Mycobacterium Smegmatis Stf0 Sulfotransferase With
Trehalose
pdb|1TEX|B Chain B, Mycobacterium Smegmatis Stf0 Sulfotransferase With
Trehalose
pdb|1TEX|C Chain C, Mycobacterium Smegmatis Stf0 Sulfotransferase With
Trehalose
pdb|1TEX|D Chain D, Mycobacterium Smegmatis Stf0 Sulfotransferase With
Trehalose
Length = 287
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 184 LIVKLVDIVDFNGS-FLARIRDLAGANPIILVVTKVDLLPKGTDF 227
L+ + D+ D +GS L+ IRD+ G++P+++ + + D++ + F
Sbjct: 129 LVQRAKDLPDRSGSGLLSAIRDVVGSDPVLIHIHRPDVVSQAVSF 173
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 267 QKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQI 326
QK+ V +LG VGKS+ +N+L+ GE+ + P Q+ L P+ +
Sbjct: 31 QKDMNSMTVLVLGKGGVGKSSTVNSLI---GEQ------VVRVSPFQAE----GLRPVMV 77
Query: 327 DAFLGGG--KLYDTPGV 341
+GG + DTPG+
Sbjct: 78 SRTMGGFTINIIDTPGL 94
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 267 QKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQI 326
QK+ V +LG VGKS+ +N+L+ GE+ + P Q+ L P+ +
Sbjct: 31 QKDMNSMTVLVLGKGGVGKSSTVNSLI---GEQ------VVRVSPFQAE----GLRPVMV 77
Query: 327 DAFLGGG--KLYDTPGV 341
+GG + DTPG+
Sbjct: 78 SRTMGGFTINIIDTPGL 94
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 267 QKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQI 326
QK+ V +LG VGKS+ +N+L+ GE+ + P Q+ L P+ +
Sbjct: 31 QKDMNSMTVLVLGKGGVGKSSTVNSLI---GEQ------VVRVSPFQAE----GLRPVMV 77
Query: 327 DAFLGGG--KLYDTPGV 341
+GG + DTPG+
Sbjct: 78 SRTMGGFTINIIDTPGL 94
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 267 QKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQI 326
QK+ V +LG VGKS+ +N+L+ GE+ + P Q+ L P+ +
Sbjct: 30 QKDMNSMTVLVLGKGGVGKSSTVNSLI---GEQ------VVRVSPFQAE----GLRPVMV 76
Query: 327 DAFLGGG--KLYDTPGV 341
+GG + DTPG+
Sbjct: 77 SRTMGGFTINIIDTPGL 93
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 212 ILVVTKVDLLP-KGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270
++V+ K+DLL +G DF V E + V + SS + G+ +++
Sbjct: 164 LIVLNKIDLLDDEGMDF------VNEQMDIYRNIGYRVLMVSSHTQDGL----KPLEEAL 213
Query: 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFL 330
GR G + VGKS+ +NALL E + + S + T ++ F
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLGLQNE-----ILTNDVSNV-SGLGQHTTTAARLYHFP 267
Query: 331 GGGKLYDTPGV 341
GG + D+PGV
Sbjct: 268 HGGDVIDSPGV 278
>pdb|4IXT|A Chain A, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) Bound To Ethyl (r)-4-cyano-3-hydroxybutyrate
pdb|4IXT|B Chain B, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) Bound To Ethyl (r)-4-cyano-3-hydroxybutyrate
pdb|4IXW|A Chain A, Halohydrin Dehalogenase (hhec) Bound To Ethyl
(2s)-oxiran-2-ylacetate
pdb|4IXW|B Chain B, Halohydrin Dehalogenase (hhec) Bound To Ethyl
(2s)-oxiran-2-ylacetate
pdb|4IY1|A Chain A, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) With Chloride Bound
pdb|4IY1|B Chain B, Structure Of A 37-fold Mutant Of Halohydrin Dehalogenase
(hhec) With Chloride Bound
Length = 254
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 254 KSLAGIVGVASEIQKEKKGRDVYI--------------LGSANVGKSAFINALLKKMGER 299
K A VAS++++ K G ++I SA G SA NAL K++GE
Sbjct: 107 KPFALANAVASQMKRRKSGHIIFITSAASFGPWKELSTYASARAGASALANALSKELGEH 166
Query: 300 D-PAAAMA 306
+ P A+A
Sbjct: 167 NIPVFAIA 174
>pdb|3TP4|A Chain A, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
pdb|3TP4|B Chain B, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
Length = 475
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 299 RDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLH-------HRQAAVV 351
RD A+ Y A+ G ++ F+ GG YDT G L H V
Sbjct: 87 RDENIALFADYIRKADAIGGVNTVGAGVENFVTGGSFYDTSGDTLRAVLPGGSHHAELVA 146
Query: 352 HAEDLPALAPQSR 364
+ +D+ LA SR
Sbjct: 147 YLDDIAELADASR 159
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 251 TSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYR 310
TS+K+ GI E+++ KG+ + G + VGKS+ +NA+ G + + +++K
Sbjct: 152 TSAKTGMGI----EELKEYLKGKISTMAGLSGVGKSSLLNAI--NPGLKLRVSEVSEK-- 203
Query: 311 PIQSAVPGTTLGPIQIDAFLGGGKLYDTPG 340
+Q TT Q+ F GG + DTPG
Sbjct: 204 -LQRGRHTTTTA--QLLKFDFGGYVVDTPG 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,588,832
Number of Sequences: 62578
Number of extensions: 605630
Number of successful extensions: 1553
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1536
Number of HSP's gapped (non-prelim): 27
length of query: 553
length of database: 14,973,337
effective HSP length: 104
effective length of query: 449
effective length of database: 8,465,225
effective search space: 3800886025
effective search space used: 3800886025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)