BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008807
(553 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66GP9|NOA1_ARATH NO-associated protein 1, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=NOA1 PE=1 SV=1
Length = 561
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/562 (69%), Positives = 454/562 (80%), Gaps = 10/562 (1%)
Query: 1 MALKTLTTFLSPLSLPHHFTNSTPKFLKTYTKPTL-IVCKSTLS---PETQFESDGAGAA 56
MAL+TL+TF S L H T P Y PT IVCKS + P + E DG AA
Sbjct: 1 MALRTLSTFPS-LPRRHTTTRREPNLTVIYRNPTTSIVCKSIANSEPPVSLSERDGFAAA 59
Query: 57 APTRGDRFLELQKAKEAAKVVVRDSKKKRKKKDKVLK----VNSAVASCYGCGAPLQTSE 112
APT G+RFLE Q+A EA KVV ++ KK++KKK + + V+++V+ CYGCGAPLQTS+
Sbjct: 60 APTPGERFLENQRAHEAQKVVKKEIKKEKKKKKEEIIARKVVDTSVSCCYGCGAPLQTSD 119
Query: 113 SDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172
D+PG+VD TYELKKKHHQ +T++CGRC+LLSHGHMITAVGGNGGY GGKQFVSADELR
Sbjct: 120 VDSPGFVDLVTYELKKKHHQLRTMICGRCQLLSHGHMITAVGGNGGYPGGKQFVSADELR 179
Query: 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGD 232
EKLSHLR EKALIVKLVDIVDFNGSFLAR+RDL GANPIILV+TK+DLLPKGTD NC+GD
Sbjct: 180 EKLSHLRHEKALIVKLVDIVDFNGSFLARVRDLVGANPIILVITKIDLLPKGTDMNCIGD 239
Query: 233 WVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINAL 292
WVVE T +KKLNVLSVHLTSSKSL G+ GVASEIQKEKKGRDVYILG+ANVGKSAFINAL
Sbjct: 240 WVVEVTMRKKLNVLSVHLTSSKSLDGVSGVASEIQKEKKGRDVYILGAANVGKSAFINAL 299
Query: 293 LKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLHHRQAAVVH 352
LK M ERDP AA AQKY+PIQSAVPGTTLGPIQI+AF+GG KLYDTPGVHLHHRQAAVVH
Sbjct: 300 LKTMAERDPVAAAAQKYKPIQSAVPGTTLGPIQINAFVGGEKLYDTPGVHLHHRQAAVVH 359
Query: 353 AEDLPALAPQSRLRGQSFAVIS-ETETNNEFKSHGLNGFTIFWGGLVRIDLLKVLPETCL 411
++DLPALAPQ+RLRGQSF + + T++++ K LNG+T FWGGLVRID+LK LPETC
Sbjct: 360 SDDLPALAPQNRLRGQSFDISTLPTQSSSSPKGESLNGYTFFWGGLVRIDILKALPETCF 419
Query: 412 TFYGPKSLQVYMVPTDKADEFYQKELGVTLTPPIGKQKAEGWKGLDRERLLEIKFEDTER 471
TFYGPK+L+++ VPT A FY+KELGV LTPP GK + + WKGL RLL+I+ D +R
Sbjct: 420 TFYGPKALEIHAVPTKTATAFYEKELGVLLTPPSGKNQMQEWKGLQSHRLLQIEINDAKR 479
Query: 472 PASDVAISGLGWISVEPVRRSIRNSDINLESTSGELHLAVHVPKPVEVFVRNPMPVGKAG 531
PASDVAISGLGWIS+EP+R++ +L E+H+ V VPKPVEVF+R +P+G +G
Sbjct: 480 PASDVAISGLGWISIEPIRKTRGTEPRDLNEAEHEIHICVSVPKPVEVFLRPTLPIGTSG 539
Query: 532 AEWYQYRELTETELEVRPKWYF 553
EWYQYRELT+ E EVRPKWYF
Sbjct: 540 TEWYQYRELTDKEEEVRPKWYF 561
>sp|Q6YPG5|NOS_ORYSJ Putative nitric oxide synthase OS=Oryza sativa subsp. japonica
GN=Os02g0104700 PE=3 SV=1
Length = 547
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/502 (69%), Positives = 417/502 (83%), Gaps = 15/502 (2%)
Query: 59 TRGDRFLELQKAKEAAKVVVRDSK----KKRKKKDKVLKVNSAVASCYGCGAPLQTSESD 114
+RGDRFL Q A EAA V+ ++R++K K L + A+CYGCGAPLQT++
Sbjct: 54 SRGDRFLGTQLAAEAAARVLAPEDAERRRRRREKRKALARKPSAAACYGCGAPLQTADEA 113
Query: 115 APGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREK 174
APGYV P TY+LKK+HHQ +TVLCGRC+LLSHGHMITAVGG+GGY GGKQFVSAD+LR+K
Sbjct: 114 APGYVHPATYDLKKRHHQLRTVLCGRCKLLSHGHMITAVGGHGGYPGGKQFVSADQLRDK 173
Query: 175 LSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWV 234
LS+LR EKALI+KLVDIVDFNGSFLAR+RD AGANPIILV+TKVDLLP+ TD NC+GDWV
Sbjct: 174 LSYLRHEKALIIKLVDIVDFNGSFLARVRDFAGANPIILVITKVDLLPRDTDLNCIGDWV 233
Query: 235 VEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLK 294
VEA KKKLNVLSVHLTSSKSL G+ GV SEIQ+EKKGRDVYILGSANVGKSAFI+A+L+
Sbjct: 234 VEAVVKKKLNVLSVHLTSSKSLVGVTGVISEIQQEKKGRDVYILGSANVGKSAFISAMLR 293
Query: 295 KMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLHHRQAAVVHAE 354
M +DP AA AQKY+PIQSAVPGTTLGPIQI+AFLGGGKLYDTPGVHLHHRQAAV+HA+
Sbjct: 294 TMAYKDPVAAAAQKYKPIQSAVPGTTLGPIQIEAFLGGGKLYDTPGVHLHHRQAAVIHAD 353
Query: 355 DLPALAPQSRLRGQSFAVISETETNNEFKSHGLNGFTIFWGGLVRIDLLKVLPETCLTFY 414
DLP+LAPQSRLR + F ++T+ GL+G ++FWGGLVRID++K LP T LTFY
Sbjct: 354 DLPSLAPQSRLRARCFPA-NDTDV-------GLSGNSLFWGGLVRIDVVKALPRTRLTFY 405
Query: 415 GPKSLQVYMVPTDKADEFYQKELGVTLTPPIGKQKAEGWKGLDRERLLEIKFEDTERPAS 474
GPK L++ MVPT +ADEFY++E+GVTLTPP GK+KAEGW GL R L+IK+E+++RPA
Sbjct: 406 GPKKLKINMVPTTEADEFYEREVGVTLTPPAGKEKAEGWVGLQGVRELQIKYEESDRPAC 465
Query: 475 DVAISGLGWISVEPVRRSIRNSDINLE---STSGELHLAVHVPKPVEVFVRNPMPVGKAG 531
D+AISGLGW++VEP+ N D + E + SGELHL VHVPKPVE+FVR P+PVGKA
Sbjct: 466 DIAISGLGWVAVEPLGVPSSNPDESAEEEDNESGELHLRVHVPKPVEIFVRPPLPVGKAA 525
Query: 532 AEWYQYRELTETELEVRPKWYF 553
++WY+Y+ELTE E E+RPKW++
Sbjct: 526 SQWYRYQELTEEEEELRPKWHY 547
>sp|P54453|YQEH_BACSU Uncharacterized protein YqeH OS=Bacillus subtilis (strain 168)
GN=yqeH PE=1 SV=1
Length = 366
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 201/428 (46%), Gaps = 71/428 (16%)
Query: 101 CYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYA 160
C GCG +QT + GY P + L K++ V+C RC L + + I V
Sbjct: 6 CIGCGVTIQTEDKTGLGYAPPAS--LTKEN-----VICQRCFRLKNYNEIQDVS------ 52
Query: 161 GGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDL 220
++ D+ L + +L+VK+VDI DFNGS++ ++ L G NPI+LV K D+
Sbjct: 53 -----LTDDDFLNILHGIGETDSLVVKIVDIFDFNGSWINGLQRLVGGNPILLVGNKADI 107
Query: 221 LPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGS 280
LPK + W+ + L + V L S+ GI V I+ + G+DVY++G
Sbjct: 108 LPKSLKRERLIQWMKREAKELGLKPVDVFLVSAGRGQGIREVIDAIEHYRNGKDVYVVGC 167
Query: 281 ANVGKSAFINALLKKM-GERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTP 339
NVGKS FIN ++K++ GE D S PGTTL I+I G LYDTP
Sbjct: 168 TNVGKSTFINRIIKEVSGEEDIITT---------SQFPGTTLDAIEI-PLDDGSSLYDTP 217
Query: 340 GVHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVISETETNNEFKSHGLNGFTIFWGGLVR 399
G+ +H+ A V+ +DL L+P+ L+ ++F + + T+++GGL R
Sbjct: 218 GIINNHQMAHYVNKKDLKILSPKKELKPRTFQLNDQQ--------------TLYFGGLAR 263
Query: 400 IDLL--KVLPETCLTFYGPKSLQVYMVPTDKADEFYQKELGVTLTPPIGKQKAEGWKGLD 457
D + + P C Y P L ++ + AD Y+K G LTPP GK + + + L
Sbjct: 264 FDYVSGERSPFIC---YMPNELMIHRTKLENADALYEKHAGELLTPP-GKDEMDEFPEL- 318
Query: 458 RERLLEIKFEDTERPASDVAISGLGWISVEPVRRSIRNSDINLESTSGELHLAVHVPKPV 517
IK + T D+ SGLGW++V + + + PK V
Sbjct: 319 VAHTFTIKDKKT-----DIVFSGLGWVTVHDADKKV----------------TAYAPKGV 357
Query: 518 EVFVRNPM 525
VFVR +
Sbjct: 358 HVFVRRSL 365
>sp|Q32LB9|NOA1_BOVIN Nitric oxide-associated protein 1 OS=Bos taurus GN=NOA1 PE=2 SV=1
Length = 694
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 109/262 (41%), Gaps = 55/262 (20%)
Query: 100 SCYGCGAPLQTSESDAPGYVDPDTYELK-KKHHQFKTVLCGRCRLLSHGHMITAVGGNGG 158
+C GCGA L + PGY+ + + + + +C RC LL H +
Sbjct: 140 NCSGCGAELHCQDPGVPGYLPSEKFNSAVAEEGGLERTVCQRCWLLVHHRRALRLQ---- 195
Query: 159 YAGGKQFVSADELREKLSH-LRR-EKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVT 216
VS + E +S LRR E AL++ +VD++D + L + L G +I++
Sbjct: 196 -------VSQGQFLELVSAALRRPEPALVLYMVDLLDLPDTLLPHLPALVGPKQLIVLGN 248
Query: 217 KVDLLPKGTDF-----------NCVGDWVV-----------------------EATTKKK 242
KVDLLP+ T C+G ++ +K
Sbjct: 249 KVDLLPQDTPNYRQRLRERLWDECIGAGLLPPRGYRRAQRSSGDRPRGGEDNANLPSKSS 308
Query: 243 LNVLSVHLTSSKSLAGIVGVASEIQKEKKGR-DVYILGSANVGKSAFINALLKKMGERDP 301
+ V L S+K+ G+ + S +Q+ + R DVY++GS N GKS N LL E D
Sbjct: 309 TVLRDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGSTNAGKSTLFNTLL----ESDY 364
Query: 302 AAAMAQKY--RPIQSAVPGTTL 321
A + R S PGTTL
Sbjct: 365 CIAKGAEAIDRATISPWPGTTL 386
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 370 FAVISETETNNEFKSHGL--------NGFTIFWGGLVRIDLLKVLPETCLTFYGPKSLQV 421
++++E E N +H + G +F G L RID LK T L V
Sbjct: 508 LSLLTEKEVNIVLPTHSIIPRTFMLKPGMVLFLGALGRIDFLKGNQSAWFTVVASNFLPV 567
Query: 422 YMVPTDKADEFYQKELGVTL--TPPIGKQKAEGWKGLDRERLLEIKFEDTERPASDVAIS 479
++ DKAD YQK G TL P G+++ G+ L E + + +D+ +S
Sbjct: 568 HITSLDKADTMYQKHAGHTLLKVPVGGEERMAGFPPLVAEDITLDEGLGESEAVADIKLS 627
Query: 480 GLGWISVEP 488
GW++V P
Sbjct: 628 SAGWVAVTP 636
>sp|Q9JJG9|NOA1_MOUSE Nitric oxide-associated protein 1 OS=Mus musculus GN=Noa1 PE=1 SV=1
Length = 693
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 134/306 (43%), Gaps = 65/306 (21%)
Query: 66 ELQKAKEAAKVVVRDSKKKRKKKD--KVLKV----NSAVAS----CYGCGAPLQTSESDA 115
+LQ+ KE ++ R+ + ++K + + L V +++V C GCGA L
Sbjct: 97 QLQQEKERERLQQREERLQQKLRAGFRTLPVPEFPDASVPPSGIYCSGCGAELHCQHPGL 156
Query: 116 PGYVDPDTY-ELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREK 174
PGY+ + + + + +C RC LL H G A Q VS D+ E
Sbjct: 157 PGYLPEEKFRDAAQAEGGPARTVCQRCWLLVHH----------GRALRLQ-VSRDQYLEL 205
Query: 175 LSH-LRRE-KALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDF----- 227
+S LRR AL++ +V+++D + L + L G +I++ KVDLLP+
Sbjct: 206 VSAALRRPGPALVLYMVNLLDLPDALLPDLPKLVGPKQLIVLGNKVDLLPQDAPGYLKRL 265
Query: 228 ------NCV-----------------GDWVVE------ATTKKKLNVLSVHLTSSKSLAG 258
+C+ GD +E +++ + V V L S+K+ G
Sbjct: 266 RKRLWDDCIRAGLVVAPGHQGPQYPAGDEPLEEIKNQNPSSRSRTVVKDVRLISAKTGYG 325
Query: 259 IVGVASEIQKEKKGR-DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKY--RPIQSA 315
+ + S +Q+ + R DVY++G+ N GKS N LL E D A + R S
Sbjct: 326 VEEMISALQRSWRYRGDVYLVGTTNAGKSTLFNTLL----ESDYCTAKGSEAIDRATISP 381
Query: 316 VPGTTL 321
PGTTL
Sbjct: 382 WPGTTL 387
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 24/164 (14%)
Query: 372 VISETETNNEFKSHGL--------NGFTIFWGGLVRIDLLKVLPETCLTFYGPKSLQVYM 423
+++E E N +H + G +F GG+ RID L+ T L V++
Sbjct: 510 LLTEKEINTVLPTHSIIPRTFVLKPGMVLFLGGIARIDFLQGNQSAWFTVVASNFLPVHI 569
Query: 424 VPTDKADEFYQKELG--VTLTPPIGKQKAEGWKGLDRERLLEIKFEDTERPASDVAISGL 481
DKAD Y+K G + L P GK++ + L E + +K +D+ S
Sbjct: 570 TSLDKADALYEKHAGHELLLVPMGGKERMAQFPPLVAEDIT-LKGGGKFEAVADIKFSSA 628
Query: 482 GWISVEPVRRSIRNSDINLESTSGELHLAVHVPKPVEVFVRNPM 525
GW++V P + G LHL H P+ + V P+
Sbjct: 629 GWVAVTPY-------------SEGTLHLRGHTPEGTALTVHPPV 659
>sp|Q8NC60|NOA1_HUMAN Nitric oxide-associated protein 1 OS=Homo sapiens GN=NOA1 PE=1 SV=2
Length = 698
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 78/193 (40%), Gaps = 29/193 (15%)
Query: 335 LYDTPGVHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVISETETNNEFKSHGLNGFTIFW 394
YDTPG+ + ++ +++ + P + ++F + G +F
Sbjct: 494 FYDTPGITKENCILNLLTEKEVNIVLPTQSIVPRTFVLKP--------------GMVLFL 539
Query: 395 GGLVRIDLLKVLPETCLTFYGPKSLQVYMVPTDKADEFYQKELGVTL--TPPIGKQKAEG 452
G + RID L+ T L V++ D+AD YQK G TL P GK++ G
Sbjct: 540 GAIGRIDFLQGNQSAWFTVVASNILPVHITSLDRADALYQKHAGHTLLQIPMGGKERMAG 599
Query: 453 WKGLDRERLLEIKFEDTERPASDVAISGLGWISVEPVRRSIRNSDINLESTSGELHLAVH 512
+ L E ++ + +D+ S GW+SV P + LHL +
Sbjct: 600 FPPLVAEDIMLKEGLGASEAVADIKFSSAGWVSVTP-------------NFKDRLHLRGY 646
Query: 513 VPKPVEVFVRNPM 525
P+ + VR P+
Sbjct: 647 TPEGTVLTVRPPL 659
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 108/261 (41%), Gaps = 54/261 (20%)
Query: 100 SCYGCGAPLQTSESDAPGYVDPDTY-ELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGG 158
+C GCGA L ++ PGY+ + + + +C RC LLSH +
Sbjct: 140 NCSGCGAELHCQDAGVPGYLPREKFLRTAEADGGLARTVCQRCWLLSHHRRALRLQ---- 195
Query: 159 YAGGKQFVSADELREKLSH-LRRE-KALIVKLVDIVDFNGSFLARIRDLAGANPIILVVT 216
VS ++ E +S LRR +L++ +VD++D + L + L G +I++
Sbjct: 196 -------VSREQYLELVSAALRRPGPSLVLYMVDLLDLPDALLPDLPALVGPKQLIVLGN 248
Query: 217 KVDLLPKGTDF-----------NC-----------------VGDWVVEATTKKKLN---- 244
KVDLLP+ +C V D + N
Sbjct: 249 KVDLLPQDAPGYRQRLRERLWEDCARAGLLLAPGHQGPQRPVKDEPQDGENPNPPNWSRT 308
Query: 245 -VLSVHLTSSKSLAGIVGVASEIQKEKKGR-DVYILGSANVGKSAFINALLKKMGERDPA 302
V V L S+K+ G+ + S +Q+ + R DVY++G+ N GKS N LL E D
Sbjct: 309 VVRDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGATNAGKSTLFNTLL----ESDYC 364
Query: 303 AAMAQKY--RPIQSAVPGTTL 321
A + R S PGTTL
Sbjct: 365 TAKGSEAIDRATISPWPGTTL 385
>sp|C6C0G0|DER_DESAD GTPase Der OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM
2638 / NCIB 8403 / VKM B-1763) GN=der PE=3 SV=1
Length = 450
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 68/140 (48%), Gaps = 23/140 (16%)
Query: 210 PIILVVTKVD---LLPKGT-DFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASE 265
PI+L+V KVD L T DF+ +G ++ + + N+L + +A G+ E
Sbjct: 116 PILLLVNKVDGSELEATATADFHALGFEMMAVSAEHGFNLLELR-EKVADMALATGIEYE 174
Query: 266 IQKEK-KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPI 324
+ E+ KG + +LG N GKS+ +NAL GE R I S V GTT +
Sbjct: 175 EEDEEAKGLKIAMLGRPNAGKSSMVNAL---TGEE----------RVIVSDVAGTTRDSV 221
Query: 325 QIDAFLGGGKLY---DTPGV 341
+ F GGK+Y DT GV
Sbjct: 222 DV-TFESGGKIYTFVDTAGV 240
>sp|Q7VFY6|DER_HELHP GTPase Der OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=der PE=3 SV=1
Length = 487
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 49/205 (23%)
Query: 210 PIILVVTKVD---LLPKGTDFNCVG-------------------DWVVEATTKKKLNVLS 247
P++LV+ KVD + + DF C G + + E + K LS
Sbjct: 110 PLVLVINKVDNDKIKQQAWDFACFGAEQMYFISVHHNRGLSILLEAIFELLSLAKEQSLS 169
Query: 248 VHLTSS-------KSLAGIVGV-ASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGER 299
+L S +SL +G+ S K ++ V I+G NVGKS+ +NALL
Sbjct: 170 NNLRSQMDNEEIDESLEEFLGILESTPNKSEENIAVGIIGRVNVGKSSLLNALLG----- 224
Query: 300 DPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKL--YDTPGVHLHHRQAAVVHAEDLP 357
K R + S V GTT+ P+ + + G ++ DT G+ R+A+ + +
Sbjct: 225 --------KERSVVSEVAGTTIDPVDDEMDIEGKRVRFVDTAGI----RRASKIWGIEKF 272
Query: 358 ALAPQSRLRGQSFAVISETETNNEF 382
AL + QS VI + + F
Sbjct: 273 ALLRTNAALAQSHIVILVLDASESF 297
>sp|B5Z7J9|DER_HELPG GTPase Der OS=Helicobacter pylori (strain G27) GN=der PE=3 SV=1
Length = 460
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 37/166 (22%)
Query: 203 RDLAGANP-IILVVTKVDL--------------LPKGTDFNCVGDWVVEATTKKKLNVLS 247
R++ NP LV+ K+D +PK + + + + A LN LS
Sbjct: 109 REVFKTNPNCFLVINKIDNDKEKERAYAFSSFGMPKSFNISVSHNRGISALIDAVLNALS 168
Query: 248 VHLTSSKSLAGIV-----GVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPA 302
++ + L + A E + +++ V I+G NVGKS+ +NAL K
Sbjct: 169 LNQIIEQDLDADILESLENNAPEEETKEEIIQVGIIGRVNVGKSSLLNALTK-------- 220
Query: 303 AAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKL--YDTPGVHLHHR 346
K R + S+V GTT+ PI +G K+ DT G+ HR
Sbjct: 221 -----KERSLVSSVAGTTIDPIDETILIGDQKICFVDTAGI--RHR 259
>sp|Q9ZL09|DER_HELPJ GTPase Der OS=Helicobacter pylori (strain J99) GN=der PE=3 SV=1
Length = 462
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 17/86 (19%)
Query: 263 ASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLG 322
A E KE++ V I+G NVGKS+ +NAL K K R + S+V GTT+
Sbjct: 191 ALEETKEEEIIQVGIIGRVNVGKSSLLNALTK-------------KERSLVSSVAGTTID 237
Query: 323 PIQIDAFLGGGKL--YDTPGVHLHHR 346
PI +G K+ DT G+ HR
Sbjct: 238 PIDETILIGDQKICFVDTAGI--RHR 261
>sp|B6JM65|DER_HELP2 GTPase Der OS=Helicobacter pylori (strain P12) GN=der PE=3 SV=1
Length = 462
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 17/86 (19%)
Query: 263 ASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLG 322
A E KE++ V I+G NVGKS+ +NAL K K R + S+V GTT+
Sbjct: 191 ALEETKEEEIIQVGIIGRVNVGKSSLLNALTK-------------KERSLVSSVAGTTID 237
Query: 323 PIQIDAFLGGGKL--YDTPGVHLHHR 346
PI +G K+ DT G+ HR
Sbjct: 238 PIDETILIGDQKICFVDTAGI--RHR 261
>sp|B1LBI4|DER_THESQ GTPase Der OS=Thermotoga sp. (strain RQ2) GN=der PE=3 SV=1
Length = 439
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 29/128 (22%)
Query: 221 LPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGS 280
+P + N D ++E T KKL + L S + + VA I+G
Sbjct: 143 IPVSAEHNINLDTLLE-TIIKKLEEKGLDLESKPEITDAIKVA-------------IVGR 188
Query: 281 ANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK--LYDT 338
NVGKS NA+L K R + S +PGTT P+ + F+ G K DT
Sbjct: 189 PNVGKSTLFNAIL-------------NKERALVSPIPGTTRDPVDEEVFIDGKKYVFVDT 235
Query: 339 PGVHLHHR 346
G+ R
Sbjct: 236 AGLRRRSR 243
>sp|A5IMD9|DER_THEP1 GTPase Der OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 /
DSM 13995) GN=der PE=3 SV=1
Length = 439
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 29/128 (22%)
Query: 221 LPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGS 280
+P + N D +VE T +KL + L S + + VA I+G
Sbjct: 143 IPVSAEHNVNLDVLVE-TIIRKLEEKGLDLESKPEITDAIKVA-------------IVGR 188
Query: 281 ANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK--LYDT 338
NVGKS NA+L K R + S +PGTT P+ + F+ G K DT
Sbjct: 189 PNVGKSTLFNAIL-------------NKERALVSPIPGTTRDPVDEEVFIDGRKYVFVDT 235
Query: 339 PGVHLHHR 346
G+ R
Sbjct: 236 AGLRRKSR 243
>sp|Q9X1F8|DER_THEMA GTPase Der OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=der PE=1 SV=1
Length = 439
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 29/128 (22%)
Query: 221 LPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGS 280
+P + N D ++E T KKL + L S + + VA I+G
Sbjct: 143 IPVSAEHNINLDTLLE-TIIKKLEEKGLDLESKPEITDAIKVA-------------IVGR 188
Query: 281 ANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK--LYDT 338
NVGKS NA+L K R + S +PGTT P+ + F+ G K DT
Sbjct: 189 PNVGKSTLFNAIL-------------NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDT 235
Query: 339 PGVHLHHR 346
G+ R
Sbjct: 236 AGLRRKSR 243
>sp|Q9TLX6|MNME_CYACA Probable tRNA modification GTPase mnmE OS=Cyanidium caldarium
GN=mnmE PE=3 SV=1
Length = 465
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 259 IVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPG 318
++ +++ K +G V I+G NVGKS+ +NA+ A++ I + PG
Sbjct: 208 LISSYNKVSKLNEGTKVCIIGKPNVGKSSLLNAI-------------AKRECSIVTNFPG 254
Query: 319 TTLGPIQIDAFLGGG--KLYDTPGV 341
TT + + LG +LYDT G+
Sbjct: 255 TTRDIVSFETMLGNTLVRLYDTAGI 279
>sp|B3ETH9|MNME_AMOA5 tRNA modification GTPase MnmE OS=Amoebophilus asiaticus (strain
5a2) GN=mnmE PE=3 SV=1
Length = 455
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 15/77 (19%)
Query: 270 KKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF 329
K G + I+G NVGKS +NALL Q+ R I S +PGTT I+ +
Sbjct: 217 KNGLPIAIVGKPNVGKSTLLNALL-------------QEERAIVSPIPGTTRDFIEAEIN 263
Query: 330 LGG--GKLYDTPGVHLH 344
+GG + DT G+ H
Sbjct: 264 IGGIHCRFIDTAGLREH 280
>sp|B9K8E0|DER_THENN GTPase Der OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359
/ NS-E) GN=der PE=3 SV=1
Length = 439
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 275 VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK 334
+ I+G NVGKS NA+L K R + S +PGTT P+ + F+ G K
Sbjct: 183 IAIVGRPNVGKSTLFNAIL-------------NKERALVSPIPGTTRDPVDDEVFIDGKK 229
Query: 335 --LYDTPGVHLHHR 346
DT G+ R
Sbjct: 230 YIFVDTAGLRRKSR 243
>sp|P75104|MNME_MYCPN tRNA modification GTPase MnmE OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=mnmE PE=1 SV=1
Length = 442
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 15/95 (15%)
Query: 253 SKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPI 312
++ L IV ++Q+ K + I+G+ NVGKS+ +NALL ++D A I
Sbjct: 198 TQILNQIVVGQDQLQRLKDPFKIAIIGNTNVGKSSLLNALL----DQDKA---------I 244
Query: 313 QSAVPGTTLGPIQIDAFLGGG--KLYDTPGVHLHH 345
SA+ G+T ++ D L G K+ DT G+ H
Sbjct: 245 VSAIKGSTRDIVEGDFALNGHFVKILDTAGIRQHQ 279
>sp|A4WVZ0|MNME_RHOS5 tRNA modification GTPase MnmE OS=Rhodobacter sphaeroides (strain
ATCC 17025 / ATH 2.4.3) GN=mnmE PE=3 SV=1
Length = 428
Score = 40.4 bits (93), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 267 QKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQI 326
++ + G +V I+G+ N GKS +NAL AQ+ I S V GTT I++
Sbjct: 207 ERIRDGFEVAIIGAPNAGKSTLLNAL-------------AQREAAITSEVAGTTRDVIEV 253
Query: 327 DAFLGG--GKLYDTPGVHLHH 345
LGG L DT G+ H
Sbjct: 254 RMNLGGLAVTLLDTAGLRETH 274
>sp|Q899S2|MNME_CLOTE tRNA modification GTPase MnmE OS=Clostridium tetani (strain
Massachusetts / E88) GN=mnmE PE=3 SV=1
Length = 459
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 270 KKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF 329
++G DV I+G NVGKS+ +NALL + R I + +PGTT I+
Sbjct: 221 REGLDVVIVGKPNVGKSSLLNALL-------------SEKRAIVTEIPGTTRDVIEEYIN 267
Query: 330 LGG--GKLYDTPGVH 342
L G K+ DT G+
Sbjct: 268 LDGIPIKIIDTAGIR 282
>sp|A7ZBS1|DER_CAMC1 GTPase Der OS=Campylobacter concisus (strain 13826) GN=der PE=3
SV=1
Length = 462
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 17/84 (20%)
Query: 262 VASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTL 321
++ EI E K V I+G NVGKS+ +NAL+K+ R + S V GTT+
Sbjct: 187 LSDEIDYESKNIRVGIIGRVNVGKSSLLNALVKES-------------RAVVSDVAGTTI 233
Query: 322 GPIQIDAFLGGGKLY---DTPGVH 342
P+ + + G+++ DT G+
Sbjct: 234 DPVN-EIYEHDGRVFEFVDTAGIR 256
>sp|Q39ZT0|MNME_PELCD tRNA modification GTPase MnmE OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=mnmE PE=3 SV=2
Length = 456
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 270 KKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF 329
++G V I G NVGKS+ +N LL GE R I + +PGTT I+ D
Sbjct: 218 REGLRVLIFGKPNVGKSSLMNGLL---GE----------ARAIVTDIPGTTRDTIEEDLV 264
Query: 330 LGG--GKLYDTPGVH 342
LGG ++ DT G+
Sbjct: 265 LGGLPLRIVDTAGIR 279
>sp|O25505|DER_HELPY GTPase Der OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=der PE=3 SV=1
Length = 458
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 17/74 (22%)
Query: 275 VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK 334
V I+G NVGKS+ +NAL K K R + S+V GTT+ PI +G K
Sbjct: 199 VGIIGRVNVGKSSLLNALTK-------------KERSLVSSVAGTTIDPIDETILIGDQK 245
Query: 335 L--YDTPGVHLHHR 346
+ DT G+ HR
Sbjct: 246 ICFVDTAGI--RHR 257
>sp|A1K3Z3|DER_AZOSB GTPase Der OS=Azoarcus sp. (strain BH72) GN=der PE=3 SV=1
Length = 442
Score = 39.7 bits (91), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 63/143 (44%), Gaps = 32/143 (22%)
Query: 210 PIILVVTKVDLLPKGT---DFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIV----GV 262
P+++VV K + L + T DF+ +G L V + H K+L +V
Sbjct: 113 PVVVVVNKAEGLDRATVAADFHALG-------LGAPLAVSAAHGDGVKALVELVLAPFPA 165
Query: 263 ASEIQK-EKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTL 321
E++ E G V I+G NVGKS +N LL GE R I +PGTT
Sbjct: 166 DDEVEAAEDAGPRVAIVGRPNVGKSTLVNTLL---GEE----------RVIAFDMPGTTR 212
Query: 322 GPIQIDAFLGGGKLY---DTPGV 341
I I F GGK Y DT G+
Sbjct: 213 DAIAI-PFERGGKQYTLIDTAGL 234
>sp|Q1CT35|DER_HELPH GTPase Der OS=Helicobacter pylori (strain HPAG1) GN=der PE=3 SV=1
Length = 461
Score = 39.7 bits (91), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 17/74 (22%)
Query: 275 VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK 334
V I+G NVGKS+ +NAL K K R + S+V GTT+ PI +G K
Sbjct: 202 VGIIGRVNVGKSSLLNALTK-------------KERSLVSSVAGTTIDPIDETILIGDQK 248
Query: 335 L--YDTPGVHLHHR 346
+ DT G+ HR
Sbjct: 249 ICFVDTAGI--RHR 260
>sp|A7Z4J8|RSGA_BACA2 Putative ribosome biogenesis GTPase RsgA OS=Bacillus
amyloliquefaciens (strain FZB42) GN=rsgA PE=3 SV=1
Length = 296
Score = 39.7 bits (91), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 170 ELREKLSHLRR------EKALIVKLVDIVDFNGSFLARIRDLAGANPI--ILVVTKVDLL 221
E++E+ + L R ++A++V F+ S L R L AN I I+ +TK+DL
Sbjct: 60 EIKERTNELIRPPISNVDQAVLVFSAVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLA 119
Query: 222 PKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSA 281
G + +V + V++TSSK +G+ G+ K + + G +
Sbjct: 120 ADGESKEAILSYVKDYQAIG----YDVYVTSSKENSGLTGIV----KHFENKTTVFAGQS 171
Query: 282 NVGKSAFINAL 292
VGKS+ +NA+
Sbjct: 172 GVGKSSLLNAI 182
>sp|Q2RFI8|MNME_MOOTA tRNA modification GTPase MnmE OS=Moorella thermoacetica (strain
ATCC 39073) GN=mnmE PE=3 SV=1
Length = 462
Score = 39.7 bits (91), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFL 330
+G V I+G NVGKS+ +NALL + R I S +PGTT I+ L
Sbjct: 219 EGLKVAIVGRPNVGKSSLLNALL-------------NQERAIVSNIPGTTRDTIEETLQL 265
Query: 331 GG--GKLYDTPGVH 342
GG +L DT G+
Sbjct: 266 GGFTCRLIDTAGLR 279
>sp|B2USZ4|DER_HELPS GTPase Der OS=Helicobacter pylori (strain Shi470) GN=der PE=3 SV=1
Length = 461
Score = 39.7 bits (91), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 17/74 (22%)
Query: 275 VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK 334
V I+G NVGKS+ +NAL K K R + S+V GTT+ PI +G K
Sbjct: 202 VGIIGRVNVGKSSLLNALTK-------------KERSLVSSVAGTTIDPIDETILIGDQK 248
Query: 335 L--YDTPGVHLHHR 346
+ DT G+ HR
Sbjct: 249 ICFVDTAGI--RHR 260
>sp|B2SXS6|DER_BURPP GTPase Der OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
GN=der PE=3 SV=1
Length = 445
Score = 39.3 bits (90), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 17/82 (20%)
Query: 264 SEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGP 323
S+ +K+ +G + I+G NVGKS INAL+ GE R I +PGTT
Sbjct: 171 SDEEKQTRGVKIAIVGRPNVGKSTLINALV---GEE----------RVIAFDMPGTTRDS 217
Query: 324 IQIDAFLGGGKLY---DTPGVH 342
I +D F GGK Y DT G+
Sbjct: 218 IYVD-FERGGKPYTLIDTAGLR 238
>sp|Q67NS9|DER_SYMTH GTPase Der OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=der PE=3 SV=1
Length = 471
Score = 39.3 bits (90), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 79/179 (44%), Gaps = 32/179 (17%)
Query: 180 REKALIVKLVDIVDFNGSFLARIRDL--AGANPIILVVTKVDLLPK---GTDFNCVGDWV 234
RE +I+ +VD+ D + + DL P+I+ V KV+ L + +F +G
Sbjct: 82 READVIIFVVDVTDGVTAPDLEVADLLRRQRKPVIVAVNKVENLKREDEALEFWALG--- 138
Query: 235 VEATTKKKLNVLSVHLTSSKSLAGIVGVA----SEIQKEKKG-RDVYILGSANVGKSAFI 289
+ +NV + H + L V A SE + E+ G V ++G NVGKS+ +
Sbjct: 139 ----LEPLINVSAEHGLGTGDLLDAVVAALPDLSEPEPEEGGPVRVAVIGRPNVGKSSLV 194
Query: 290 NALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK--LYDTPGVHLHHR 346
NA+L GE R I S VPGTT I + G K L DT G+ R
Sbjct: 195 NAIL---GEE----------RVIVSDVPGTTRDAIDVLVERGEDKFLLIDTAGMRRKAR 240
>sp|Q9PFV1|RSGA_XYLFA Putative ribosome biogenesis GTPase RsgA OS=Xylella fastidiosa
(strain 9a5c) GN=rsgA PE=3 SV=1
Length = 341
Score = 39.3 bits (90), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 87/216 (40%), Gaps = 37/216 (17%)
Query: 163 KQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPI--ILVVTKVDL 220
K+ + + R++L + A IV +D DFN + R L G+ + ++V+TKVDL
Sbjct: 103 KRLAAGEHYRQQLIAANLDTAFIVCGLD-GDFNPRRIERYCVLIGSGGVEPVVVLTKVDL 161
Query: 221 LPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK-------GR 273
A + VL H SS++LA + A E + GR
Sbjct: 162 C---------------ADVGAAVAVLREH--SSQALAVVAVDAREAEPVAALYPWLLPGR 204
Query: 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGG 333
V +LGS+ GKS N LL + +R + Q+ + L P+ G
Sbjct: 205 TVALLGSSGAGKSTLTNTLLGE--QRMKVGEVRQRDSRGRHTTTHRALLPLP-----SGA 257
Query: 334 KLYDTPGVH---LHHRQAAVVHAEDLPALAPQSRLR 366
L DTPG+ + V D+ LA Q R R
Sbjct: 258 CLIDTPGMRELKFTGEEDLVEEFADIELLATQCRFR 293
>sp|Q6MB45|DER_PARUW GTPase Der OS=Protochlamydia amoebophila (strain UWE25) GN=der PE=3
SV=1
Length = 487
Score = 38.9 bits (89), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 54/236 (22%)
Query: 140 RCRLLSHGHMI---TAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVD----IV 192
R RL + G + V GG + V +E++ + E IV++VD +
Sbjct: 40 RDRLYAEGELFGLHFQVIDTGGINARSKEVFNEEIKRQAEIAIEEADTIVQVVDAHVGLT 99
Query: 193 DFNGSFLARIRDLAGANPIILVVTKVDLLPKGT---DFNCVG-----------DWVVEAT 238
+ + +AR+ L P+ L V K+D L + + F+ +G W +
Sbjct: 100 ELDKE-VARVL-LRTKKPVCLAVNKIDNLSQTSLMHQFHSLGIKQMIPVSAAQGWQIAEL 157
Query: 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGE 298
+ +S + S ++ + I V I+G ANVGKS+ +N LL
Sbjct: 158 LETAFEKISREIESQETFSSI--------------KVAIVGRANVGKSSLVNYLL----- 198
Query: 299 RDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLY---DTPGVHLHHRQAAVV 351
+ R I S +PGTT + I +F + Y DT G+ + VV
Sbjct: 199 --------DEDRCIVSPIPGTTRDSVDI-SFTHKDECYTLIDTAGIRRKRAEHEVV 245
>sp|B0T6E0|MNME_CAUSK tRNA modification GTPase MnmE OS=Caulobacter sp. (strain K31)
GN=mnmE PE=3 SV=1
Length = 447
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 15/82 (18%)
Query: 263 ASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLG 322
AS ++ + G + ++G+ N GKS +NAL+ ERD A I ++ PGTT
Sbjct: 203 ASRGRRVRDGYRIALVGAPNAGKSTLLNALV----ERDAA---------IVTSTPGTTRD 249
Query: 323 PIQIDAFLGGGK--LYDTPGVH 342
I++ LGG K L DT G+
Sbjct: 250 IIEVPLTLGGYKTLLADTAGLR 271
>sp|O31743|RBGA_BACSU Ribosome biogenesis GTPase A OS=Bacillus subtilis (strain 168)
GN=rbgA PE=1 SV=1
Length = 282
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 175 LSHLRREKALIVKLVDIV----DFNGSFLAR---IRDLAGANPIILVVTKVDLLPKGTDF 227
++ RRE +KL+DIV D +R I D+ P I+++ K D D
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD----KADA 65
Query: 228 NCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGR-----------DVY 276
W E + + LS++ + + L IV + EI +EK R
Sbjct: 66 AVTQQWK-EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRAL 124
Query: 277 ILGSANVGKSAFINALLK----KMGERDPAAAMAQKY 309
I+G NVGKS IN L K K G+R P +Q++
Sbjct: 125 IIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQW 160
>sp|E0TTS5|RBGA_BACPZ Ribosome biogenesis GTPase A OS=Bacillus subtilis subsp. spizizenii
(strain ATCC 23059 / NRRL B-14472 / W23) GN=rbgA PE=3
SV=1
Length = 282
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 175 LSHLRREKALIVKLVDIV----DFNGSFLAR---IRDLAGANPIILVVTKVDLLPKGTDF 227
++ RRE +KL+DIV D +R I D+ P I+++ K D D
Sbjct: 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKAD----KADA 65
Query: 228 NCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGR-----------DVY 276
W E + + LS++ + + L IV + EI +EK R
Sbjct: 66 AVTQQWK-EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRAL 124
Query: 277 ILGSANVGKSAFINALLK----KMGERDPAAAMAQKY 309
I+G NVGKS IN L K K G+R P +Q++
Sbjct: 125 IIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQW 160
>sp|A8F732|MNME_THELT tRNA modification GTPase MnmE OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=mnmE PE=3 SV=1
Length = 450
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG 331
G V I+G NVGKS +N L+K + R I + +PGTT I++ +
Sbjct: 213 GIKVVIIGKPNVGKSTLLNTLVK-------------EERAIVTDIPGTTRDLIEVPLMIN 259
Query: 332 GGK--LYDTPGVHLHHRQAAVVHAE 354
G L DT G+ H + + E
Sbjct: 260 GISFTLIDTAGIRHSHDEVEKIGVE 284
>sp|Q02A42|MNME_SOLUE tRNA modification GTPase MnmE OS=Solibacter usitatus (strain
Ellin6076) GN=mnmE PE=3 SV=1
Length = 444
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFL 330
+G + I+G NVGKS+ N LL ++ R I + +PGTT + A +
Sbjct: 215 QGLTLAIVGRPNVGKSSLFNRLL-------------EQDRAIVTEIPGTTRDVVSETAAI 261
Query: 331 GG--GKLYDTPGVH 342
GG KLYDT G+
Sbjct: 262 GGIPVKLYDTAGIR 275
>sp|B9L7G9|DER_NAUPA GTPase Der OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM
18972 / AmH) GN=der PE=3 SV=1
Length = 461
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 275 VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK 334
V I+G NVGKS+ +NAL +GE R I S V GTT+ PI + + G
Sbjct: 201 VAIVGRVNVGKSSLLNAL---VGEE----------RAIVSDVDGTTIDPIDENIYHDGWN 247
Query: 335 L--YDTPGVHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVI 373
+ DT G+ R++ + E L + L A++
Sbjct: 248 ITFVDTAGI---RRRSKIKDIEKYALLRTEKVLEEADIAIL 285
>sp|Q30TK8|DER_SULDN GTPase Der OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
1251) GN=der PE=3 SV=1
Length = 494
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 275 VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGK 334
+ I+G NVGKS+ +NALL GE R + S+V GTT+ PI +
Sbjct: 237 ISIIGRTNVGKSSLLNALL---GEE----------RSVVSSVAGTTIDPIDESMEYKDKQ 283
Query: 335 L--YDTPGVHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVI 373
L DT G+ R+ +V E + + L + A++
Sbjct: 284 LTFVDTAGL---RRRGKIVGIEKFALMRTKEMLENSNMALV 321
>sp|Q13X32|DER_BURXL GTPase Der OS=Burkholderia xenovorans (strain LB400) GN=der PE=3
SV=1
Length = 445
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 62/141 (43%), Gaps = 23/141 (16%)
Query: 210 PIILVVTKVDLLPKGT---DFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEI 266
PI LVV K + + T DF +G A + + ++ + + +A G E
Sbjct: 113 PIFLVVNKAEGMKYSTVAADFYELGLGDPRAISAAHGDGVTEMINEALEVA-YAGQPEEN 171
Query: 267 QKEKKGRDV--YILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPI 324
EK R V I+G NVGKS INAL+ GE R I +PGTT I
Sbjct: 172 DDEKAARGVKIAIVGRPNVGKSTLINALV---GEE----------RVIAFDMPGTTRDSI 218
Query: 325 QIDAFLGGGKLY---DTPGVH 342
+D F GGK Y DT G+
Sbjct: 219 YVD-FERGGKPYTLIDTAGLR 238
>sp|Q3T0J9|GNL3L_BOVIN Guanine nucleotide-binding protein-like 3-like protein OS=Bos
taurus GN=GNL3L PE=2 SV=1
Length = 575
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 49/164 (29%)
Query: 207 GANPIILVVTKVDLLPKGTDFNCVGDWV-----------VEATTK---KKLNVLSV---- 248
G ++LV+ K+DL+PK V W+ +A+T+ K LN SV
Sbjct: 157 GNKKLVLVLNKIDLVPK----EVVEKWLEYLRNELPTVAFKASTQHQVKNLNRCSVPVDQ 212
Query: 249 ---HLTSSKSLAG------IVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGER 299
L SK+ G ++G + + + V ++G NVGKS+ IN+L +R
Sbjct: 213 ASESLLKSKACFGAENLMRVLGNYCRLGEVRTHIRVGVVGLPNVGKSSLINSL-----KR 267
Query: 300 DPAAAMAQKYRPIQSAVPGTT--LGPIQIDAFLGGGKLYDTPGV 341
A ++ AVPG T + + +D F+ +L D PG+
Sbjct: 268 SRACSVG--------AVPGVTKFMQEVYLDKFI---RLLDAPGI 300
>sp|O34530|RSGA_BACSU Putative ribosome biogenesis GTPase RsgA OS=Bacillus subtilis
(strain 168) GN=rsgA PE=1 SV=1
Length = 298
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 170 ELREKLSHLRR------EKALIVKLVDIVDFNGSFLARIRDLAGANPI--ILVVTKVDLL 221
E++E+ + L R ++A++V F+ + L R L AN I I+ +TK+DL+
Sbjct: 62 EIKERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 121
Query: 222 PKGTDFNCVGDWVVEATTKKKLNV-LSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGS 280
+ ++A + N+ V+LTSSK + + Q + G
Sbjct: 122 EDQD-----TEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQD----KTTVFAGQ 172
Query: 281 ANVGKSAFINALLKKMGER 299
+ VGKS+ +NA+ ++G R
Sbjct: 173 SGVGKSSLLNAISPELGLR 191
>sp|Q1IHC2|MNME_KORVE tRNA modification GTPase MnmE OS=Koribacter versatilis (strain
Ellin345) GN=mnmE PE=3 SV=1
Length = 454
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 15/80 (18%)
Query: 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFL 330
+G + I+G NVGKS+ N L+ ERD R I +A+PGTT + L
Sbjct: 220 EGLTLAIVGRPNVGKSSLFNRLV----ERD---------RAIVTAIPGTTRDLVTETVSL 266
Query: 331 GG--GKLYDTPGVHLHHRQA 348
GG L DT G+ H +A
Sbjct: 267 GGIPVHLVDTAGIRESHDEA 286
>sp|A6M3M5|MNME_CLOB8 tRNA modification GTPase MnmE OS=Clostridium beijerinckii (strain
ATCC 51743 / NCIMB 8052) GN=mnmE PE=3 SV=1
Length = 462
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 15/75 (20%)
Query: 270 KKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF 329
+ G ++ I+G NVGKS+ +NALL+ + R I + VPGTT I+
Sbjct: 225 RDGLNIVIVGKPNVGKSSLLNALLR-------------ENRAIVTDVPGTTRDIIEEYIN 271
Query: 330 LGG--GKLYDTPGVH 342
L G K+ DT G+
Sbjct: 272 LDGIPVKITDTAGIR 286
>sp|P40010|NUG1_YEAST Nuclear GTP-binding protein NUG1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NUG1 PE=1 SV=1
Length = 520
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 211 IILVVTKVDLLPKGTDFNCVGDWV---------------VEATTKKKLNVLSVHLTSSKS 255
+IL++ KVDL+P + + W+ A N T++ +
Sbjct: 208 LILILNKVDLIPP----HVLEQWLNYLKSSFPTIPLRASSGAVNGTSFNRKLSQTTTASA 263
Query: 256 LAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSA 315
L + S K+ V ++G NVGKS+ INALL + G + A + + A
Sbjct: 264 LLESLKTYSNNSNLKRSIVVGVIGYPNVGKSSVINALLARRGGQSKACPVGNE------A 317
Query: 316 VPGTTLGPIQIDAFLGGGKLYDTPGVHL---HHRQAAVVHAEDLPAL 359
T+L I+ID L K+ D+PG+ + +++ V H +L L
Sbjct: 318 GVTTSLREIKIDNKL---KILDSPGICFPSENKKRSKVEHEAELALL 361
>sp|Q0ATU5|MNME_SYNWW tRNA modification GTPase MnmE OS=Syntrophomonas wolfei subsp.
wolfei (strain Goettingen) GN=mnmE PE=3 SV=1
Length = 459
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 17/86 (19%)
Query: 259 IVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPG 318
+ G +EI +E G +V I G NVGKS+ +NALL+ K + I +++PG
Sbjct: 210 LAGERAEIYRE--GINVAICGKPNVGKSSLLNALLR-------------KEKAIVTSIPG 254
Query: 319 TTLGPIQIDAFLGG--GKLYDTPGVH 342
TT I+ + G KL DT G+
Sbjct: 255 TTRDIIEDYINIRGIPVKLKDTAGIR 280
>sp|C5D8U8|RBGA_GEOSW Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70)
GN=rbgA PE=3 SV=1
Length = 283
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 29/158 (18%)
Query: 175 LSHLRREKALIVKLVDIV----DFNGSFLAR---IRDLAGANPIILVVTKVDLLPKGTDF 227
++ +RE +KL+DIV D +R I ++ G P I+++ K D+ D
Sbjct: 12 MAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMIHEILGNKPRIVLLNKADM----ADE 67
Query: 228 NCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGR------------DV 275
W+ +++L+ L++ + + IV A E+ K+K +
Sbjct: 68 TVTEQWIA-YFERQQLHALAIDAQTGTGIRQIVSAAKEMLKDKFAKMAAKGIKNPRPMRA 126
Query: 276 YILGSANVGKSAFINAL----LKKMGERDPAAAMAQKY 309
I+G NVGKS IN L + K G++ P AQ++
Sbjct: 127 LIVGIPNVGKSTLINRLAGRNIAKTGDK-PGVTKAQQW 163
>sp|Q71ZZ0|RSGA2_LISMF Putative ribosome biogenesis GTPase RsgA 2 OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=rsgA2 PE=3
SV=1
Length = 346
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 16/123 (13%)
Query: 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA---GANPIILVVTKVDLLPKGTDFNC 229
E+L + ALIV ++ DFN + L R +A GA PII ++TK DL+ T F
Sbjct: 94 EQLIAANFDYALIVMSLN-HDFNLNRLERYLTVAWDSGATPII-ILTKADLVEDLTAFAQ 151
Query: 230 VGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFI 289
+ V ++ LS H G + ++ K + +LGS+ VGKS+FI
Sbjct: 152 QLETVAYGVPAYYVDNLSHH--------GFEALERDL---KPNSTLVLLGSSGVGKSSFI 200
Query: 290 NAL 292
N+L
Sbjct: 201 NSL 203
>sp|Q9NVN8|GNL3L_HUMAN Guanine nucleotide-binding protein-like 3-like protein OS=Homo
sapiens GN=GNL3L PE=1 SV=1
Length = 582
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 41/160 (25%)
Query: 207 GANPIILVVTKVDLLPKGT-----DF--NCVGDWVVEATTK---KKLNVLSV-------H 249
G ++LV+ K+DL+PK D+ N + +A+T+ K LN SV
Sbjct: 164 GNKKLVLVLNKIDLVPKEVVEKWLDYLRNELPTVAFKASTQHQVKNLNRCSVPVDQASES 223
Query: 250 LTSSKSLAG------IVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAA 303
L SK+ G ++G + + + V ++G NVGKS+ IN+L +R A
Sbjct: 224 LLKSKACFGAENLMRVLGNYCRLGEVRTHIRVGVVGLPNVGKSSLINSL-----KRSRAC 278
Query: 304 AMAQKYRPIQSAVPGTT--LGPIQIDAFLGGGKLYDTPGV 341
++ AVPG T + + +D F+ +L D PG+
Sbjct: 279 SVG--------AVPGITKFMQEVYLDKFI---RLLDAPGI 307
>sp|A5G169|MNME_ACICJ tRNA modification GTPase MnmE OS=Acidiphilium cryptum (strain JF-5)
GN=mnmE PE=3 SV=1
Length = 433
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 260 VGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGT 319
+G ++ ++G ++ +LG+ N GKS +NAL A + I S +PGT
Sbjct: 204 IGAGLAAERLREGVEIVVLGAPNAGKSTLVNAL-------------AGEEVAIVSDIPGT 250
Query: 320 TLGPIQIDAFLGG--GKLYDTPGVH 342
T I + LGG +L DT G+
Sbjct: 251 TRDAIGVRLDLGGVPVRLVDTAGLR 275
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,631,111
Number of Sequences: 539616
Number of extensions: 9320873
Number of successful extensions: 32580
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 32412
Number of HSP's gapped (non-prelim): 459
length of query: 553
length of database: 191,569,459
effective HSP length: 123
effective length of query: 430
effective length of database: 125,196,691
effective search space: 53834577130
effective search space used: 53834577130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)