Query 008807
Match_columns 553
No_of_seqs 485 out of 2954
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 16:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13796 GTPase YqeH; Provisio 100.0 6.2E-73 1.3E-77 595.2 32.4 364 100-526 2-365 (365)
2 TIGR03597 GTPase_YqeH ribosome 100.0 6.4E-69 1.4E-73 564.2 32.5 360 101-526 1-360 (360)
3 KOG1249 Predicted GTPases [Gen 100.0 3.3E-58 7.2E-63 479.8 20.5 419 93-553 32-569 (572)
4 COG2262 HflX GTPases [General 100.0 3E-32 6.5E-37 279.9 14.5 224 30-284 126-372 (411)
5 COG1161 Predicted GTPases [Gen 100.0 1.6E-32 3.5E-37 283.9 2.3 307 137-525 1-321 (322)
6 cd01855 YqeH YqeH. YqeH is an 100.0 5.7E-29 1.2E-33 239.1 17.2 188 138-341 1-190 (190)
7 COG1160 Predicted GTPases [Gen 100.0 1.2E-27 2.7E-32 249.5 17.5 222 92-348 4-243 (444)
8 PRK12289 GTPase RsgA; Reviewed 99.9 6.6E-28 1.4E-32 251.4 10.8 228 135-385 36-279 (352)
9 TIGR00157 ribosome small subun 99.9 3E-27 6.5E-32 236.1 11.6 190 178-389 33-229 (245)
10 COG1162 Predicted GTPases [Gen 99.9 1.2E-26 2.7E-31 232.6 11.3 188 182-389 80-274 (301)
11 PRK12288 GTPase RsgA; Reviewed 99.9 2.5E-26 5.4E-31 239.5 12.5 191 180-389 119-315 (347)
12 cd01858 NGP_1 NGP-1. Autoanti 99.9 1.8E-25 4E-30 208.3 12.2 146 175-341 2-157 (157)
13 cd01854 YjeQ_engC YjeQ/EngC. 99.9 2.2E-24 4.8E-29 220.4 11.1 191 178-389 75-271 (287)
14 PRK00098 GTPase RsgA; Reviewed 99.9 5E-24 1.1E-28 218.9 10.9 191 178-389 77-274 (298)
15 TIGR03596 GTPase_YlqF ribosome 99.9 1.8E-22 3.9E-27 205.3 14.7 155 169-345 9-177 (276)
16 PRK11058 GTPase HflX; Provisio 99.9 3.6E-22 7.9E-27 213.8 16.3 214 30-271 131-362 (426)
17 PRK09563 rbgA GTPase YlqF; Rev 99.9 5.2E-22 1.1E-26 203.0 14.4 154 170-345 13-180 (287)
18 cd01849 YlqF_related_GTPase Yl 99.9 9E-22 1.9E-26 183.1 12.4 138 183-341 1-155 (155)
19 TIGR03594 GTPase_EngA ribosome 99.9 1E-20 2.2E-25 204.1 19.6 218 94-345 2-234 (429)
20 cd01856 YlqF YlqF. Proteins o 99.9 5.5E-21 1.2E-25 180.7 14.5 152 169-342 7-171 (171)
21 PRK00093 GTP-binding protein D 99.9 1.5E-20 3.3E-25 203.2 19.5 219 93-345 3-235 (435)
22 TIGR03156 GTP_HflX GTP-binding 99.9 4E-21 8.7E-26 201.3 14.1 209 30-268 123-349 (351)
23 PF03193 DUF258: Protein of un 99.9 2.4E-22 5.1E-27 186.4 4.0 133 241-388 9-144 (161)
24 PRK03003 GTP-binding protein D 99.9 1.6E-20 3.4E-25 204.9 18.9 220 91-344 38-272 (472)
25 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 6E-21 1.3E-25 174.7 12.0 134 174-344 4-141 (141)
26 cd04178 Nucleostemin_like Nucl 99.8 7E-21 1.5E-25 180.1 11.0 141 183-341 1-172 (172)
27 PRK09518 bifunctional cytidyla 99.8 7.7E-20 1.7E-24 208.5 19.2 218 93-344 277-511 (712)
28 cd01859 MJ1464 MJ1464. This f 99.8 7.4E-20 1.6E-24 170.0 14.5 148 172-341 3-156 (156)
29 KOG2484 GTPase [General functi 99.8 2E-19 4.4E-24 183.7 12.5 156 167-344 132-310 (435)
30 PRK01889 GTPase RsgA; Reviewed 99.8 2.6E-19 5.7E-24 188.1 11.5 189 179-388 110-303 (356)
31 KOG1424 Predicted GTP-binding 99.8 1.2E-18 2.6E-23 182.8 10.1 158 166-345 159-373 (562)
32 KOG0410 Predicted GTP binding 99.8 8.4E-19 1.8E-23 174.6 6.5 205 30-269 113-339 (410)
33 KOG2423 Nucleolar GTPase [Gene 99.7 1.1E-17 2.4E-22 169.8 9.0 154 171-345 203-366 (572)
34 KOG2485 Conserved ATP/GTP bind 99.7 3.6E-17 7.8E-22 163.1 11.0 158 173-345 38-210 (335)
35 COG1159 Era GTPase [General fu 99.5 2.9E-13 6.3E-18 135.3 11.9 164 91-272 6-173 (298)
36 PRK05291 trmE tRNA modificatio 99.3 1.2E-11 2.5E-16 134.3 15.2 175 70-271 194-370 (449)
37 COG0486 ThdF Predicted GTPase 99.3 1.8E-11 3.8E-16 129.2 15.4 163 87-271 213-376 (454)
38 cd01878 HflX HflX subfamily. 99.3 3.4E-11 7.3E-16 116.6 13.6 157 89-268 39-202 (204)
39 COG0486 ThdF Predicted GTPase 99.3 5.1E-12 1.1E-16 133.2 7.9 63 270-345 215-279 (454)
40 TIGR00436 era GTP-binding prot 99.3 2.3E-11 4.9E-16 123.6 12.2 162 93-272 2-165 (270)
41 PF10662 PduV-EutP: Ethanolami 99.2 3.2E-11 6.9E-16 109.8 6.9 140 93-267 3-142 (143)
42 COG1159 Era GTPase [General fu 99.1 3.9E-11 8.4E-16 120.2 5.3 59 274-345 8-68 (298)
43 PRK15494 era GTPase Era; Provi 99.1 5E-10 1.1E-14 117.4 13.9 164 91-272 52-217 (339)
44 KOG1191 Mitochondrial GTPase [ 99.1 6.4E-11 1.4E-15 124.8 6.2 62 269-343 265-328 (531)
45 PRK00089 era GTPase Era; Revie 99.1 5.9E-10 1.3E-14 114.3 11.9 165 91-271 5-171 (292)
46 PRK12299 obgE GTPase CgtA; Rev 99.1 7.5E-10 1.6E-14 115.6 12.2 161 90-270 157-327 (335)
47 cd01894 EngA1 EngA1 subfamily. 99.1 8.2E-10 1.8E-14 101.1 11.0 152 96-268 2-155 (157)
48 PF02421 FeoB_N: Ferrous iron 99.1 1.5E-10 3.2E-15 107.5 5.3 57 274-344 2-60 (156)
49 PRK12298 obgE GTPase CgtA; Rev 99.1 9E-10 1.9E-14 117.3 11.8 160 91-271 159-333 (390)
50 cd04171 SelB SelB subfamily. 99.0 2.2E-09 4.7E-14 99.1 12.0 157 94-268 3-163 (164)
51 PF02421 FeoB_N: Ferrous iron 99.0 3.9E-10 8.5E-15 104.7 5.8 153 93-266 2-156 (156)
52 cd04164 trmE TrmE (MnmE, ThdF, 99.0 5.2E-09 1.1E-13 95.6 12.5 153 93-269 3-155 (157)
53 cd01879 FeoB Ferrous iron tran 99.0 6.2E-09 1.3E-13 95.6 12.2 153 97-269 2-155 (158)
54 PF00009 GTP_EFTU: Elongation 99.0 2.5E-09 5.5E-14 102.4 9.9 166 91-271 3-187 (188)
55 cd00881 GTP_translation_factor 99.0 6.4E-09 1.4E-13 98.3 12.4 164 94-270 2-186 (189)
56 cd01898 Obg Obg subfamily. Th 99.0 4E-09 8.8E-14 98.3 10.8 157 93-268 2-168 (170)
57 TIGR03594 GTPase_EngA ribosome 99.0 7.3E-09 1.6E-13 112.0 14.1 188 90-295 171-361 (429)
58 TIGR02528 EutP ethanolamine ut 98.9 4.7E-09 1E-13 95.2 10.5 140 93-267 2-141 (142)
59 cd04160 Arfrp1 Arfrp1 subfamil 98.9 3.7E-09 8E-14 98.4 10.0 154 94-267 2-165 (167)
60 COG0218 Predicted GTPase [Gene 98.9 1E-09 2.2E-14 104.6 5.8 58 273-343 25-82 (200)
61 PRK12296 obgE GTPase CgtA; Rev 98.9 4.9E-09 1.1E-13 114.0 11.6 160 91-271 159-340 (500)
62 COG1160 Predicted GTPases [Gen 98.9 9.7E-09 2.1E-13 108.4 13.3 187 90-295 177-368 (444)
63 TIGR02729 Obg_CgtA Obg family 98.9 5.8E-09 1.2E-13 108.8 11.5 160 90-269 156-327 (329)
64 cd01897 NOG NOG1 is a nucleola 98.9 1E-08 2.2E-13 95.5 11.7 156 93-268 2-165 (168)
65 cd04163 Era Era subfamily. Er 98.9 9.3E-09 2E-13 94.3 11.3 162 91-268 3-166 (168)
66 PRK15467 ethanolamine utilizat 98.9 7.6E-09 1.6E-13 96.5 10.8 144 93-270 3-146 (158)
67 PRK03003 GTP-binding protein D 98.9 1.7E-08 3.7E-13 110.6 13.8 187 90-295 210-399 (472)
68 PF01926 MMR_HSR1: 50S ribosom 98.9 2.2E-09 4.8E-14 94.4 5.3 59 274-345 1-61 (116)
69 cd01895 EngA2 EngA2 subfamily. 98.9 3.3E-08 7.2E-13 91.6 12.8 165 93-268 4-172 (174)
70 KOG1423 Ras-like GTPase ERA [C 98.8 6.6E-09 1.4E-13 103.9 8.1 177 88-271 69-271 (379)
71 PRK09866 hypothetical protein; 98.8 3.8E-08 8.2E-13 108.1 13.7 115 146-268 230-350 (741)
72 cd04149 Arf6 Arf6 subfamily. 98.8 4E-08 8.6E-13 92.4 11.9 150 91-267 9-166 (168)
73 TIGR00450 mnmE_trmE_thdF tRNA 98.8 7E-08 1.5E-12 104.5 15.1 157 89-270 201-359 (442)
74 smart00178 SAR Sar1p-like memb 98.8 4.1E-08 8.9E-13 93.7 11.3 151 91-268 17-182 (184)
75 cd04101 RabL4 RabL4 (Rab-like4 98.8 5.5E-08 1.2E-12 90.1 11.8 151 93-268 2-161 (164)
76 PRK00093 GTP-binding protein D 98.8 5.3E-08 1.2E-12 105.5 13.4 187 90-295 172-361 (435)
77 cd04157 Arl6 Arl6 subfamily. 98.8 4.5E-08 9.7E-13 90.3 11.0 145 94-267 2-160 (162)
78 cd04154 Arl2 Arl2 subfamily. 98.8 6.1E-08 1.3E-12 91.2 12.0 151 90-267 13-171 (173)
79 KOG1489 Predicted GTP-binding 98.8 1.6E-08 3.5E-13 101.7 8.1 157 90-268 195-364 (366)
80 cd04151 Arl1 Arl1 subfamily. 98.8 3.4E-08 7.4E-13 91.3 9.9 145 94-267 2-156 (158)
81 TIGR00436 era GTP-binding prot 98.8 9E-09 2E-13 104.5 6.5 58 274-344 2-61 (270)
82 cd01862 Rab7 Rab7 subfamily. 98.8 1E-07 2.3E-12 88.8 12.8 149 93-269 2-165 (172)
83 PRK12297 obgE GTPase CgtA; Rev 98.8 3.3E-08 7.1E-13 106.1 10.5 155 91-270 158-326 (424)
84 cd04109 Rab28 Rab28 subfamily. 98.7 1E-07 2.2E-12 93.4 12.2 150 93-269 2-164 (215)
85 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.7 8.4E-08 1.8E-12 90.6 10.5 150 91-267 15-172 (174)
86 PRK09518 bifunctional cytidyla 98.7 9.8E-08 2.1E-12 109.6 13.1 168 91-271 450-621 (712)
87 cd01881 Obg_like The Obg-like 98.7 4.9E-08 1.1E-12 91.2 8.8 153 97-268 2-174 (176)
88 cd01865 Rab3 Rab3 subfamily. 98.7 2E-07 4.3E-12 86.9 12.8 148 93-269 3-161 (165)
89 cd04106 Rab23_lke Rab23-like s 98.7 1.8E-07 4E-12 86.3 12.4 147 93-268 2-160 (162)
90 PRK04213 GTP-binding protein; 98.7 1.3E-07 2.8E-12 91.3 11.7 161 91-270 9-191 (201)
91 cd04150 Arf1_5_like Arf1-Arf5- 98.7 9.3E-08 2E-12 89.0 10.3 146 93-267 2-157 (159)
92 cd04158 ARD1 ARD1 subfamily. 98.7 1.2E-07 2.7E-12 88.9 11.0 149 94-270 2-160 (169)
93 cd04138 H_N_K_Ras_like H-Ras/N 98.7 1.3E-07 2.8E-12 86.9 10.9 146 93-268 3-159 (162)
94 cd01884 EF_Tu EF-Tu subfamily. 98.7 1.4E-07 2.9E-12 91.3 11.5 109 140-260 59-172 (195)
95 cd00879 Sar1 Sar1 subfamily. 98.7 1.1E-07 2.3E-12 90.8 10.5 153 91-268 19-188 (190)
96 PRK12298 obgE GTPase CgtA; Rev 98.7 2.5E-08 5.5E-13 106.2 6.5 57 274-344 161-220 (390)
97 cd01889 SelB_euk SelB subfamil 98.7 1.9E-07 4.1E-12 89.7 11.9 112 145-269 67-184 (192)
98 cd01861 Rab6 Rab6 subfamily. 98.7 2.7E-07 5.8E-12 85.1 12.3 147 93-268 2-159 (161)
99 cd04166 CysN_ATPS CysN_ATPS su 98.7 1.2E-07 2.7E-12 92.4 10.5 119 132-262 63-185 (208)
100 PRK09554 feoB ferrous iron tra 98.7 1.4E-07 3.1E-12 108.3 12.5 161 92-270 4-167 (772)
101 cd04142 RRP22 RRP22 subfamily. 98.7 2.7E-07 5.9E-12 89.4 12.7 156 93-268 2-171 (198)
102 cd01864 Rab19 Rab19 subfamily. 98.7 3.5E-07 7.7E-12 85.0 13.0 151 92-268 4-163 (165)
103 cd04145 M_R_Ras_like M-Ras/R-R 98.7 1.8E-07 3.9E-12 86.4 10.9 148 93-268 4-161 (164)
104 cd01868 Rab11_like Rab11-like. 98.7 3.4E-07 7.4E-12 85.0 12.8 148 92-268 4-162 (165)
105 PLN00223 ADP-ribosylation fact 98.6 4.3E-07 9.3E-12 86.6 13.5 151 91-270 17-177 (181)
106 PTZ00133 ADP-ribosylation fact 98.6 1.6E-07 3.5E-12 89.6 10.5 149 92-269 18-176 (182)
107 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.6 3.3E-07 7.2E-12 85.2 12.4 148 93-269 4-162 (166)
108 cd01888 eIF2_gamma eIF2-gamma 98.6 2.4E-07 5.3E-12 90.0 11.8 112 146-270 83-198 (203)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.6 1.5E-07 3.3E-12 89.7 10.1 151 92-269 4-168 (183)
110 COG0218 Predicted GTPase [Gene 98.6 4.4E-07 9.6E-12 86.6 13.1 166 92-270 25-196 (200)
111 TIGR03598 GTPase_YsxC ribosome 98.6 3.2E-07 6.9E-12 87.1 12.0 158 89-260 16-179 (179)
112 cd01853 Toc34_like Toc34-like 98.6 7.2E-08 1.6E-12 96.7 7.9 60 272-344 31-92 (249)
113 smart00177 ARF ARF-like small 98.6 3.5E-07 7.7E-12 86.5 12.2 152 91-269 13-172 (175)
114 cd04136 Rap_like Rap-like subf 98.6 2.4E-07 5.1E-12 85.6 10.7 148 93-268 3-160 (163)
115 cd04155 Arl3 Arl3 subfamily. 98.6 3E-07 6.6E-12 86.0 11.5 150 90-267 13-171 (173)
116 smart00175 RAB Rab subfamily o 98.6 3.9E-07 8.4E-12 84.1 12.1 150 93-269 2-160 (164)
117 cd04124 RabL2 RabL2 subfamily. 98.6 2.4E-07 5.2E-12 86.1 10.5 148 93-269 2-156 (161)
118 cd04156 ARLTS1 ARLTS1 subfamil 98.6 2.5E-07 5.5E-12 85.3 10.4 145 94-267 2-158 (160)
119 cd04144 Ras2 Ras2 subfamily. 98.6 4.1E-07 8.9E-12 87.2 12.1 147 94-268 2-160 (190)
120 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 4E-07 8.8E-12 84.4 11.8 154 94-269 3-164 (168)
121 cd04123 Rab21 Rab21 subfamily. 98.6 5E-07 1.1E-11 83.0 12.3 148 93-268 2-159 (162)
122 cd00880 Era_like Era (E. coli 98.6 6.9E-07 1.5E-11 80.6 13.0 156 97-268 2-161 (163)
123 cd01867 Rab8_Rab10_Rab13_like 98.6 5.7E-07 1.2E-11 84.0 12.7 149 92-269 4-163 (167)
124 cd04140 ARHI_like ARHI subfami 98.6 3.6E-07 7.8E-12 85.2 11.3 146 93-268 3-162 (165)
125 cd04107 Rab32_Rab38 Rab38/Rab3 98.6 3.6E-07 7.9E-12 88.3 11.6 148 93-268 2-165 (201)
126 cd00878 Arf_Arl Arf (ADP-ribos 98.6 3.6E-07 7.8E-12 84.2 11.0 149 94-268 2-157 (158)
127 cd04159 Arl10_like Arl10-like 98.6 2.1E-07 4.5E-12 84.7 9.3 148 94-268 2-158 (159)
128 KOG1423 Ras-like GTPase ERA [C 98.6 5E-08 1.1E-12 97.7 5.5 60 273-345 73-134 (379)
129 PTZ00099 rab6; Provisional 98.6 3.3E-07 7.2E-12 87.1 10.9 107 147-272 30-143 (176)
130 cd04112 Rab26 Rab26 subfamily. 98.6 5.3E-07 1.2E-11 86.5 12.4 149 93-270 2-162 (191)
131 cd04128 Spg1 Spg1p. Spg1p (se 98.6 6E-07 1.3E-11 85.7 12.7 152 93-269 2-164 (182)
132 cd04176 Rap2 Rap2 subgroup. T 98.6 4.4E-07 9.6E-12 84.0 11.4 148 93-268 3-160 (163)
133 cd01893 Miro1 Miro1 subfamily. 98.6 3.2E-07 6.9E-12 85.7 10.4 150 93-268 2-161 (166)
134 cd04175 Rap1 Rap1 subgroup. T 98.6 3.8E-07 8.2E-12 84.7 10.8 149 93-269 3-161 (164)
135 cd04116 Rab9 Rab9 subfamily. 98.6 5.9E-07 1.3E-11 83.9 12.1 151 92-268 6-168 (170)
136 cd04132 Rho4_like Rho4-like su 98.6 3.1E-07 6.7E-12 87.4 10.4 149 93-268 2-164 (187)
137 cd00154 Rab Rab family. Rab G 98.6 5.4E-07 1.2E-11 81.9 11.5 148 93-267 2-158 (159)
138 cd01891 TypA_BipA TypA (tyrosi 98.6 1.9E-07 4.2E-12 89.8 8.9 156 92-262 3-173 (194)
139 cd04139 RalA_RalB RalA/RalB su 98.6 8.5E-07 1.8E-11 81.7 12.8 147 93-269 2-160 (164)
140 cd04161 Arl2l1_Arl13_like Arl2 98.6 4.2E-07 9.1E-12 85.2 10.8 150 94-267 2-165 (167)
141 cd04110 Rab35 Rab35 subfamily. 98.6 7.4E-07 1.6E-11 86.1 12.7 152 90-268 5-164 (199)
142 TIGR00437 feoB ferrous iron tr 98.6 3.8E-07 8.1E-12 102.4 12.1 150 98-269 1-153 (591)
143 COG1084 Predicted GTPase [Gene 98.6 8.7E-08 1.9E-12 97.2 6.1 57 273-344 169-228 (346)
144 cd01890 LepA LepA subfamily. 98.6 7.9E-07 1.7E-11 83.7 12.3 106 147-269 68-175 (179)
145 cd04119 RJL RJL (RabJ-Like) su 98.6 8E-07 1.7E-11 82.1 12.1 147 93-268 2-164 (168)
146 cd01870 RhoA_like RhoA-like su 98.5 4.2E-07 9.1E-12 85.2 10.3 153 93-268 3-172 (175)
147 smart00173 RAS Ras subfamily o 98.5 6.6E-07 1.4E-11 82.8 11.5 147 93-269 2-160 (164)
148 TIGR00450 mnmE_trmE_thdF tRNA 98.5 1.2E-07 2.7E-12 102.7 7.4 61 271-344 202-264 (442)
149 cd04127 Rab27A Rab27a subfamil 98.5 7.9E-07 1.7E-11 83.8 12.0 150 92-268 5-174 (180)
150 cd01896 DRG The developmentall 98.5 2.8E-07 6E-12 91.7 9.3 158 93-276 2-231 (233)
151 PRK05291 trmE tRNA modificatio 98.5 1.7E-07 3.8E-12 101.9 8.4 61 271-344 214-276 (449)
152 cd04118 Rab24 Rab24 subfamily. 98.5 5.6E-07 1.2E-11 86.1 11.0 151 93-269 2-164 (193)
153 cd01866 Rab2 Rab2 subfamily. 98.5 1.1E-06 2.3E-11 82.2 12.7 148 93-269 6-164 (168)
154 cd01860 Rab5_related Rab5-rela 98.5 5.9E-07 1.3E-11 83.0 10.7 149 93-269 3-161 (163)
155 COG1163 DRG Predicted GTPase [ 98.5 2.1E-07 4.5E-12 94.2 8.0 157 93-276 65-294 (365)
156 cd04114 Rab30 Rab30 subfamily. 98.5 1.2E-06 2.7E-11 81.4 12.8 152 91-268 7-166 (169)
157 cd04135 Tc10 TC10 subfamily. 98.5 4.1E-07 8.9E-12 85.2 9.5 147 93-268 2-171 (174)
158 PTZ00258 GTP-binding protein; 98.5 1.2E-07 2.7E-12 100.3 6.5 60 271-344 20-98 (390)
159 cd00877 Ran Ran (Ras-related n 98.5 3.6E-07 7.8E-12 85.6 9.0 148 93-269 2-157 (166)
160 cd01863 Rab18 Rab18 subfamily. 98.5 5.7E-07 1.2E-11 83.0 10.0 147 93-268 2-159 (161)
161 TIGR00475 selB selenocysteine- 98.5 8.6E-07 1.9E-11 99.4 13.1 157 94-269 3-164 (581)
162 cd01852 AIG1 AIG1 (avrRpt2-ind 98.5 1.7E-07 3.6E-12 90.5 6.4 59 274-344 2-62 (196)
163 cd04120 Rab12 Rab12 subfamily. 98.5 1.1E-06 2.3E-11 85.6 11.8 149 94-268 3-160 (202)
164 cd01871 Rac1_like Rac1-like su 98.5 7.3E-07 1.6E-11 84.3 10.5 149 93-268 3-172 (174)
165 PRK00089 era GTPase Era; Revie 98.5 1.7E-07 3.8E-12 96.1 6.5 59 273-344 6-66 (292)
166 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.5 1.2E-06 2.5E-11 87.2 12.0 147 93-268 15-185 (232)
167 cd01900 YchF YchF subfamily. 98.5 1.3E-07 2.8E-12 95.9 5.3 56 275-344 1-75 (274)
168 cd04165 GTPBP1_like GTPBP1-lik 98.5 1.4E-06 3.1E-11 86.1 12.4 115 141-268 79-220 (224)
169 cd01874 Cdc42 Cdc42 subfamily. 98.5 8.3E-07 1.8E-11 84.1 10.3 151 93-268 3-172 (175)
170 cd01883 EF1_alpha Eukaryotic e 98.5 1.3E-06 2.8E-11 85.9 12.0 118 131-260 62-194 (219)
171 smart00174 RHO Rho (Ras homolo 98.5 6.9E-07 1.5E-11 83.7 9.7 151 96-268 3-169 (174)
172 cd04147 Ras_dva Ras-dva subfam 98.5 1.2E-06 2.7E-11 84.5 11.6 151 94-269 2-161 (198)
173 PRK09601 GTP-binding protein Y 98.5 1.8E-07 3.9E-12 98.1 6.1 58 273-344 3-79 (364)
174 cd04122 Rab14 Rab14 subfamily. 98.5 1.9E-06 4.1E-11 80.3 12.5 148 93-268 4-161 (166)
175 TIGR00231 small_GTP small GTP- 98.5 6.5E-07 1.4E-11 80.8 8.9 155 93-267 3-160 (161)
176 cd01875 RhoG RhoG subfamily. 98.5 1.3E-06 2.8E-11 83.9 11.4 155 93-269 5-175 (191)
177 cd04143 Rhes_like Rhes_like su 98.5 1.9E-06 4E-11 86.5 12.8 148 93-269 2-169 (247)
178 cd04113 Rab4 Rab4 subfamily. 98.5 1.9E-06 4.2E-11 79.5 11.9 147 93-268 2-159 (161)
179 cd01892 Miro2 Miro2 subfamily. 98.5 7.8E-07 1.7E-11 83.6 9.4 155 89-269 2-164 (169)
180 PTZ00369 Ras-like protein; Pro 98.5 1.5E-06 3.3E-11 83.2 11.5 147 92-268 6-164 (189)
181 COG4917 EutP Ethanolamine util 98.4 2.7E-07 5.8E-12 81.0 5.5 104 149-268 40-143 (148)
182 TIGR00991 3a0901s02IAP34 GTP-b 98.4 3.4E-07 7.5E-12 93.7 7.2 73 259-344 24-99 (313)
183 cd00876 Ras Ras family. The R 98.4 2E-06 4.3E-11 78.8 11.7 147 94-268 2-158 (160)
184 cd04117 Rab15 Rab15 subfamily. 98.4 2.4E-06 5.1E-11 79.5 12.4 149 94-268 3-159 (161)
185 cd00157 Rho Rho (Ras homology) 98.4 6.3E-07 1.4E-11 83.4 8.5 151 93-268 2-170 (171)
186 cd04108 Rab36_Rab34 Rab34/Rab3 98.4 2E-06 4.4E-11 80.9 11.9 150 93-269 2-163 (170)
187 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.4 1.7E-06 3.8E-11 82.6 11.3 149 91-268 5-177 (182)
188 PRK12299 obgE GTPase CgtA; Rev 98.4 3.3E-07 7.1E-12 95.9 6.6 57 274-344 160-219 (335)
189 cd04125 RabA_like RabA-like su 98.4 2.7E-06 5.9E-11 81.1 12.4 147 93-268 2-159 (188)
190 PLN03071 GTP-binding nuclear p 98.4 9.6E-07 2.1E-11 86.9 9.3 148 92-269 14-170 (219)
191 smart00176 RAN Ran (Ras-relate 98.4 1.9E-06 4.1E-11 83.7 11.2 103 147-269 45-152 (200)
192 PRK12317 elongation factor 1-a 98.4 9.4E-07 2E-11 95.6 10.0 159 92-263 7-197 (425)
193 cd04121 Rab40 Rab40 subfamily. 98.4 2.3E-06 5E-11 82.3 11.6 150 92-268 7-164 (189)
194 PRK15494 era GTPase Era; Provi 98.4 3.5E-07 7.5E-12 96.0 6.4 58 274-344 54-113 (339)
195 cd04133 Rop_like Rop subfamily 98.4 1.1E-06 2.4E-11 83.5 9.2 149 94-269 4-171 (176)
196 cd04130 Wrch_1 Wrch-1 subfamil 98.4 8.8E-07 1.9E-11 83.3 8.4 146 94-266 3-169 (173)
197 PRK12296 obgE GTPase CgtA; Rev 98.4 3.2E-07 6.9E-12 100.0 6.0 56 274-343 161-218 (500)
198 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.4 4.4E-06 9.6E-11 78.8 13.1 148 93-268 4-161 (172)
199 cd04115 Rab33B_Rab33A Rab33B/R 98.4 3.5E-06 7.6E-11 79.0 12.2 150 92-268 3-166 (170)
200 cd01898 Obg Obg subfamily. Th 98.4 4.2E-07 9.1E-12 84.6 5.9 55 274-342 2-59 (170)
201 cd04162 Arl9_Arfrp2_like Arl9/ 98.4 1.3E-06 2.8E-11 81.7 9.1 146 95-267 3-162 (164)
202 PRK00454 engB GTP-binding prot 98.4 4.6E-06 9.9E-11 79.7 13.1 165 90-271 23-194 (196)
203 PLN03110 Rab GTPase; Provision 98.4 3.5E-06 7.7E-11 82.6 12.5 151 92-269 13-172 (216)
204 TIGR03156 GTP_HflX GTP-binding 98.4 3.7E-07 8E-12 96.1 5.6 56 273-342 190-248 (351)
205 COG0370 FeoB Fe2+ transport sy 98.4 5.6E-07 1.2E-11 99.4 7.1 58 273-344 4-63 (653)
206 COG0536 Obg Predicted GTPase [ 98.4 2E-06 4.2E-11 87.9 10.0 159 92-270 160-332 (369)
207 PRK10512 selenocysteinyl-tRNA- 98.4 3.1E-06 6.8E-11 95.3 12.8 110 147-269 52-164 (614)
208 KOG1191 Mitochondrial GTPase [ 98.3 2.6E-06 5.5E-11 90.6 11.0 168 89-270 266-449 (531)
209 PRK12297 obgE GTPase CgtA; Rev 98.3 5.9E-07 1.3E-11 96.5 6.3 56 274-343 160-218 (424)
210 PTZ00327 eukaryotic translatio 98.3 2.7E-06 6E-11 92.4 11.5 112 146-270 117-232 (460)
211 PLN03118 Rab family protein; P 98.3 2.7E-06 5.8E-11 83.0 10.3 150 92-270 15-176 (211)
212 cd04111 Rab39 Rab39 subfamily. 98.3 4.3E-06 9.4E-11 81.7 11.8 149 93-268 4-163 (211)
213 cd04177 RSR1 RSR1 subgroup. R 98.3 3.5E-06 7.5E-11 78.7 10.7 149 93-268 3-161 (168)
214 cd04129 Rho2 Rho2 subfamily. 98.3 1.7E-06 3.8E-11 82.6 8.7 156 93-269 3-171 (187)
215 PRK04213 GTP-binding protein; 98.3 6.7E-07 1.5E-11 86.2 5.9 53 273-341 10-62 (201)
216 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.3 5.5E-06 1.2E-10 78.3 11.6 121 135-273 58-187 (221)
217 KOG0084 GTPase Rab1/YPT1, smal 98.3 2.1E-06 4.5E-11 81.2 8.8 119 135-271 45-172 (205)
218 cd04131 Rnd Rnd subfamily. Th 98.3 3.8E-06 8.3E-11 79.9 10.7 149 93-268 3-173 (178)
219 PRK11058 GTPase HflX; Provisio 98.3 6.1E-07 1.3E-11 96.8 5.6 56 274-343 199-257 (426)
220 cd04134 Rho3 Rho3 subfamily. 98.3 2.3E-06 5E-11 81.9 9.1 154 93-269 2-172 (189)
221 TIGR03598 GTPase_YsxC ribosome 98.3 1.1E-06 2.3E-11 83.5 6.4 59 272-343 18-76 (179)
222 PRK12736 elongation factor Tu; 98.3 5.6E-06 1.2E-10 88.7 12.6 155 90-257 11-179 (394)
223 cd04126 Rab20 Rab20 subfamily. 98.3 4.4E-06 9.5E-11 82.4 10.8 152 93-268 2-187 (220)
224 cd04164 trmE TrmE (MnmE, ThdF, 98.3 1.1E-06 2.5E-11 80.0 6.2 59 272-343 1-61 (157)
225 KOG0078 GTP-binding protein SE 98.3 8.2E-06 1.8E-10 78.2 12.0 152 92-269 13-172 (207)
226 cd04137 RheB Rheb (Ras Homolog 98.3 8.6E-06 1.9E-10 76.8 12.1 148 93-270 3-162 (180)
227 TIGR02729 Obg_CgtA Obg family 98.3 1E-06 2.2E-11 92.0 6.2 56 274-343 159-217 (329)
228 CHL00071 tufA elongation facto 98.3 5.3E-06 1.2E-10 89.3 11.6 156 91-259 12-181 (409)
229 COG1084 Predicted GTPase [Gene 98.3 1.3E-05 2.9E-10 81.6 13.6 156 93-268 170-333 (346)
230 PF00025 Arf: ADP-ribosylation 98.3 1.5E-06 3.2E-11 82.4 6.4 152 89-268 12-173 (175)
231 cd04146 RERG_RasL11_like RERG/ 98.3 4.5E-06 9.8E-11 77.6 9.4 148 94-269 2-162 (165)
232 PRK00454 engB GTP-binding prot 98.3 1.3E-06 2.7E-11 83.6 5.7 58 273-343 25-82 (196)
233 cd04148 RGK RGK subfamily. Th 98.2 6.5E-06 1.4E-10 81.1 10.8 147 93-270 2-162 (221)
234 KOG1249 Predicted GTPases [Gen 98.2 1.4E-07 3E-12 100.7 -2.0 240 49-297 69-334 (572)
235 PRK12735 elongation factor Tu; 98.2 1.3E-05 2.9E-10 85.9 13.1 159 89-259 10-181 (396)
236 cd01897 NOG NOG1 is a nucleola 98.2 2.2E-06 4.8E-11 79.6 6.2 55 274-342 2-58 (168)
237 cd01894 EngA1 EngA1 subfamily. 98.2 1.5E-06 3.2E-11 79.4 4.9 56 276-344 1-58 (157)
238 cd01876 YihA_EngB The YihA (En 98.2 2.1E-05 4.6E-10 72.1 12.6 162 94-268 2-168 (170)
239 PRK09554 feoB ferrous iron tra 98.2 1.9E-06 4.2E-11 99.1 6.8 58 273-344 4-63 (772)
240 PRK04000 translation initiatio 98.2 1.2E-05 2.7E-10 86.6 12.5 111 146-269 85-199 (411)
241 COG0370 FeoB Fe2+ transport sy 98.2 6.7E-06 1.4E-10 91.0 10.5 157 92-270 4-163 (653)
242 cd01879 FeoB Ferrous iron tran 98.2 1.7E-06 3.6E-11 79.3 4.9 53 277-343 1-55 (158)
243 PLN03108 Rab family protein; P 98.2 2.1E-05 4.7E-10 76.7 12.9 150 92-268 7-165 (210)
244 TIGR02034 CysN sulfate adenyly 98.2 1.4E-05 3.1E-10 85.9 12.5 117 134-262 68-188 (406)
245 CHL00189 infB translation init 98.2 1.3E-05 2.8E-10 91.4 12.3 152 89-268 242-407 (742)
246 cd01895 EngA2 EngA2 subfamily. 98.1 3.4E-06 7.5E-11 78.0 6.1 59 273-344 3-63 (174)
247 cd01881 Obg_like The Obg-like 98.1 2.2E-06 4.8E-11 80.0 4.7 52 277-342 1-55 (176)
248 TIGR03680 eif2g_arch translati 98.1 1.7E-05 3.7E-10 85.4 12.2 110 147-269 81-194 (406)
249 TIGR00485 EF-Tu translation el 98.1 1.6E-05 3.4E-10 85.3 11.7 156 90-257 11-179 (394)
250 PRK05306 infB translation init 98.1 1E-05 2.2E-10 93.0 10.5 157 89-267 288-448 (787)
251 cd01896 DRG The developmentall 98.1 4E-06 8.7E-11 83.4 6.3 56 274-343 2-59 (233)
252 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.1 2.1E-05 4.5E-10 77.7 11.2 153 93-268 3-173 (222)
253 PLN03126 Elongation factor Tu; 98.1 2.7E-05 5.9E-10 85.2 13.1 158 89-259 79-250 (478)
254 TIGR00993 3a0901s04IAP86 chlor 98.1 4.4E-06 9.5E-11 92.5 6.8 58 273-344 119-179 (763)
255 TIGR00483 EF-1_alpha translati 98.1 2.6E-05 5.7E-10 84.4 12.5 118 135-264 74-200 (426)
256 cd01899 Ygr210 Ygr210 subfamil 98.1 3.4E-05 7.4E-10 80.2 12.8 66 208-282 214-280 (318)
257 PRK05506 bifunctional sulfate 98.1 2.3E-05 5E-10 89.0 12.4 116 134-261 92-211 (632)
258 KOG0092 GTPase Rab5/YPT51 and 98.1 1.2E-05 2.6E-10 75.8 8.3 153 92-271 6-167 (200)
259 TIGR00487 IF-2 translation ini 98.1 3E-05 6.5E-10 86.9 12.9 157 89-267 85-246 (587)
260 cd04163 Era Era subfamily. Er 98.1 6.2E-06 1.3E-10 75.4 6.2 59 273-344 4-64 (168)
261 COG1163 DRG Predicted GTPase [ 98.1 3.7E-06 8E-11 85.3 5.0 57 274-344 65-123 (365)
262 cd01873 RhoBTB RhoBTB subfamil 98.1 2E-05 4.4E-10 76.2 9.9 101 147-268 67-193 (195)
263 PRK09602 translation-associate 98.1 4.4E-06 9.5E-11 89.3 5.5 38 274-325 3-40 (396)
264 PRK05124 cysN sulfate adenylyl 98.1 2.9E-05 6.2E-10 85.2 11.9 117 135-263 96-217 (474)
265 COG5257 GCD11 Translation init 98.0 1.1E-05 2.5E-10 81.5 7.8 136 97-271 56-202 (415)
266 PRK05433 GTP-binding protein L 98.0 3.9E-05 8.4E-10 86.4 13.0 109 146-271 74-184 (600)
267 TIGR01393 lepA GTP-binding pro 98.0 3.5E-05 7.5E-10 86.7 12.5 107 147-270 71-179 (595)
268 cd01882 BMS1 Bms1. Bms1 is an 98.0 3.7E-05 7.9E-10 76.1 11.0 140 93-258 41-183 (225)
269 cd04166 CysN_ATPS CysN_ATPS su 98.0 4.7E-06 1E-10 81.3 4.6 69 274-342 1-88 (208)
270 PF01926 MMR_HSR1: 50S ribosom 98.0 1.5E-05 3.2E-10 69.9 6.8 114 93-217 1-116 (116)
271 PRK00049 elongation factor Tu; 98.0 6E-05 1.3E-09 80.9 12.6 103 144-258 73-180 (396)
272 cd01899 Ygr210 Ygr210 subfamil 98.0 8E-06 1.7E-10 84.8 5.6 36 275-324 1-36 (318)
273 KOG0462 Elongation factor-type 98.0 3.6E-05 7.8E-10 82.8 10.4 107 148-271 127-235 (650)
274 cd04103 Centaurin_gamma Centau 98.0 6E-05 1.3E-09 70.1 10.8 142 93-268 2-156 (158)
275 PRK13768 GTPase; Provisional 98.0 3.5E-05 7.7E-10 77.6 9.8 121 146-271 97-247 (253)
276 PF04548 AIG1: AIG1 family; I 98.0 1.2E-05 2.6E-10 78.7 6.2 60 274-345 2-63 (212)
277 TIGR00231 small_GTP small GTP- 98.0 1.5E-05 3.3E-10 71.7 6.5 55 274-342 3-61 (161)
278 KOG2655 Septin family protein 98.0 2.9E-06 6.3E-11 88.1 1.9 114 274-403 23-150 (366)
279 KOG0073 GTP-binding ADP-ribosy 97.9 0.00015 3.2E-09 66.9 12.4 149 89-266 14-173 (185)
280 cd00882 Ras_like_GTPase Ras-li 97.9 8E-05 1.7E-09 66.0 10.7 145 97-267 2-156 (157)
281 KOG1547 Septin CDC10 and relat 97.9 7E-06 1.5E-10 79.8 3.7 81 256-343 26-116 (336)
282 cd01861 Rab6 Rab6 subfamily. 97.9 1.9E-05 4.1E-10 72.7 6.5 55 274-342 2-60 (161)
283 cd01876 YihA_EngB The YihA (En 97.9 1.3E-05 2.7E-10 73.6 5.2 57 274-343 1-57 (170)
284 TIGR01394 TypA_BipA GTP-bindin 97.9 9.1E-05 2E-09 83.3 13.0 116 140-270 58-190 (594)
285 cd01878 HflX HflX subfamily. 97.9 1.4E-05 3.1E-10 77.2 5.7 56 273-342 42-100 (204)
286 PLN03127 Elongation factor Tu; 97.9 8.7E-05 1.9E-09 80.8 12.2 120 92-223 62-192 (447)
287 cd01852 AIG1 AIG1 (avrRpt2-ind 97.9 5.4E-05 1.2E-09 73.0 9.5 169 93-271 2-184 (196)
288 cd04171 SelB SelB subfamily. 97.9 1.7E-05 3.8E-10 72.9 5.8 58 274-342 2-62 (164)
289 cd01887 IF2_eIF5B IF2/eIF5B (i 97.9 1.7E-05 3.6E-10 73.5 5.7 55 274-342 2-61 (168)
290 PTZ00132 GTP-binding nuclear p 97.9 9.1E-05 2E-09 72.3 11.2 162 91-282 9-180 (215)
291 cd01886 EF-G Elongation factor 97.9 0.00012 2.5E-09 74.5 11.9 107 134-256 52-160 (270)
292 cd04104 p47_IIGP_like p47 (47- 97.9 4.5E-05 9.8E-10 73.7 8.4 161 93-271 3-184 (197)
293 COG0536 Obg Predicted GTPase [ 97.8 1.6E-05 3.5E-10 81.3 4.5 56 274-344 161-220 (369)
294 PF00071 Ras: Ras family; Int 97.8 5.7E-05 1.2E-09 69.7 7.7 148 94-268 2-158 (162)
295 TIGR02836 spore_IV_A stage IV 97.8 3.9E-05 8.5E-10 80.9 6.9 84 262-345 6-105 (492)
296 TIGR00491 aIF-2 translation in 97.8 0.00016 3.4E-09 81.1 11.5 107 147-267 70-212 (590)
297 COG0481 LepA Membrane GTPase L 97.8 8.1E-05 1.8E-09 79.0 8.5 108 147-271 77-186 (603)
298 KOG1489 Predicted GTP-binding 97.8 2.2E-05 4.7E-10 79.5 4.1 58 274-345 198-258 (366)
299 cd00880 Era_like Era (E. coli 97.8 4.3E-05 9.3E-10 68.8 5.7 55 277-344 1-58 (163)
300 cd04168 TetM_like Tet(M)-like 97.7 0.00057 1.2E-08 68.2 14.0 76 136-223 54-131 (237)
301 KOG0095 GTPase Rab30, small G 97.7 0.00013 2.9E-09 65.9 8.1 103 147-267 57-165 (213)
302 cd04104 p47_IIGP_like p47 (47- 97.7 4.8E-05 1E-09 73.5 5.8 62 274-344 3-65 (197)
303 PRK12739 elongation factor G; 97.7 0.00045 9.8E-09 79.4 14.7 123 90-224 7-141 (691)
304 TIGR00437 feoB ferrous iron tr 97.7 3.8E-05 8.2E-10 86.4 5.7 52 279-344 1-54 (591)
305 KOG0083 GTPase Rab26/Rab37, sm 97.7 8.8E-05 1.9E-09 65.9 6.7 97 168-270 57-159 (192)
306 PRK00741 prfC peptide chain re 97.7 0.00046 1E-08 76.6 14.1 123 90-224 9-147 (526)
307 PF00350 Dynamin_N: Dynamin fa 97.7 5E-05 1.1E-09 70.8 5.4 22 275-296 1-22 (168)
308 PRK14845 translation initiatio 97.7 0.00024 5.2E-09 83.8 12.1 107 147-267 527-669 (1049)
309 cd01850 CDC_Septin CDC/Septin. 97.7 6.7E-05 1.4E-09 76.6 6.7 23 274-296 6-28 (276)
310 PTZ00141 elongation factor 1- 97.7 0.00033 7.1E-09 76.3 12.4 115 135-261 74-203 (446)
311 PF00735 Septin: Septin; Inte 97.7 1.6E-05 3.4E-10 81.3 2.0 24 274-297 6-29 (281)
312 KOG0394 Ras-related GTPase [Ge 97.7 0.0002 4.4E-09 67.2 8.9 155 88-268 6-175 (210)
313 PRK00007 elongation factor G; 97.7 0.00054 1.2E-08 78.8 14.4 124 89-224 8-143 (693)
314 cd04154 Arl2 Arl2 subfamily. 97.7 5.9E-05 1.3E-09 70.8 5.4 24 272-295 14-37 (173)
315 COG0532 InfB Translation initi 97.7 0.00018 4E-09 77.7 9.7 104 146-267 55-166 (509)
316 COG3596 Predicted GTPase [Gene 97.7 3E-05 6.6E-10 77.3 3.4 58 271-343 38-99 (296)
317 KOG0093 GTPase Rab3, small G p 97.7 0.00027 5.9E-09 63.9 9.1 111 136-268 62-180 (193)
318 PRK15467 ethanolamine utilizat 97.7 4.5E-05 9.8E-10 71.1 4.4 22 274-295 3-24 (158)
319 COG2895 CysN GTPases - Sulfate 97.7 0.00023 5.1E-09 73.1 9.7 120 129-260 69-192 (431)
320 PRK10218 GTP-binding protein; 97.6 0.00051 1.1E-08 77.3 13.4 163 91-270 5-194 (607)
321 cd04167 Snu114p Snu114p subfam 97.6 0.00018 3.9E-09 70.3 8.5 64 146-221 71-136 (213)
322 PRK12317 elongation factor 1-a 97.6 5.7E-05 1.2E-09 81.8 5.4 71 272-342 6-95 (425)
323 cd04145 M_R_Ras_like M-Ras/R-R 97.6 0.00011 2.3E-09 67.8 6.4 23 273-295 3-25 (164)
324 cd01891 TypA_BipA TypA (tyrosi 97.6 9.5E-05 2.1E-09 71.0 6.3 23 273-295 3-25 (194)
325 cd01851 GBP Guanylate-binding 97.6 7.1E-05 1.5E-09 74.0 5.4 60 274-345 9-74 (224)
326 cd04160 Arfrp1 Arfrp1 subfamil 97.6 9.1E-05 2E-09 68.6 5.8 22 274-295 1-22 (167)
327 PRK09602 translation-associate 97.6 0.00031 6.6E-09 75.3 10.6 55 208-272 217-272 (396)
328 PRK13351 elongation factor G; 97.6 0.00058 1.3E-08 78.5 13.6 121 90-223 7-140 (687)
329 cd04155 Arl3 Arl3 subfamily. 97.6 0.0001 2.2E-09 68.8 6.1 57 271-342 13-69 (173)
330 cd01884 EF_Tu EF-Tu subfamily. 97.6 0.00011 2.3E-09 71.2 6.3 70 273-342 3-76 (195)
331 cd01886 EF-G Elongation factor 97.6 0.00011 2.4E-09 74.8 6.6 68 274-343 1-76 (270)
332 cd01868 Rab11_like Rab11-like. 97.6 0.00013 2.8E-09 67.6 6.5 22 274-295 5-26 (165)
333 cd00881 GTP_translation_factor 97.6 7.4E-05 1.6E-09 70.4 5.0 24 274-297 1-24 (189)
334 cd01889 SelB_euk SelB subfamil 97.6 6.5E-05 1.4E-09 72.0 4.5 22 274-295 2-23 (192)
335 PLN00043 elongation factor 1-a 97.6 0.00056 1.2E-08 74.5 12.1 106 144-261 83-203 (447)
336 cd04159 Arl10_like Arl10-like 97.6 9.2E-05 2E-09 67.1 5.1 21 275-295 2-22 (159)
337 cd04138 H_N_K_Ras_like H-Ras/N 97.6 0.00014 3E-09 66.6 6.3 22 274-295 3-24 (162)
338 PRK04004 translation initiatio 97.6 0.00038 8.3E-09 78.2 11.0 159 89-267 4-214 (586)
339 cd01885 EF2 EF2 (for archaea a 97.6 0.0002 4.3E-09 70.7 7.6 64 146-221 73-138 (222)
340 PF05049 IIGP: Interferon-indu 97.6 6.3E-05 1.4E-09 79.2 4.3 65 272-345 35-100 (376)
341 cd00154 Rab Rab family. Rab G 97.6 0.00012 2.5E-09 66.3 5.6 22 274-295 2-23 (159)
342 cd01863 Rab18 Rab18 subfamily. 97.5 0.00013 2.8E-09 67.2 5.7 57 274-342 2-60 (161)
343 cd04139 RalA_RalB RalA/RalB su 97.5 0.00016 3.5E-09 66.4 6.2 22 274-295 2-23 (164)
344 TIGR00484 EF-G translation elo 97.5 0.00053 1.1E-08 78.8 11.6 123 90-224 9-143 (689)
345 PTZ00258 GTP-binding protein; 97.5 0.0006 1.3E-08 72.6 11.1 91 89-192 19-126 (390)
346 cd00878 Arf_Arl Arf (ADP-ribos 97.5 0.00013 2.8E-09 67.0 5.4 55 274-343 1-55 (158)
347 TIGR02528 EutP ethanolamine ut 97.5 7.8E-05 1.7E-09 67.4 3.8 22 274-295 2-23 (142)
348 cd01866 Rab2 Rab2 subfamily. 97.5 0.00014 3.1E-09 67.9 5.6 22 274-295 6-27 (168)
349 cd01860 Rab5_related Rab5-rela 97.5 0.00015 3.2E-09 66.9 5.6 22 274-295 3-24 (163)
350 cd04175 Rap1 Rap1 subgroup. T 97.5 0.00018 3.9E-09 66.6 6.3 22 274-295 3-24 (164)
351 cd04157 Arl6 Arl6 subfamily. 97.5 0.00012 2.6E-09 67.3 5.0 22 274-295 1-22 (162)
352 cd04119 RJL RJL (RabJ-Like) su 97.5 0.00022 4.7E-09 65.7 6.7 22 274-295 2-23 (168)
353 smart00173 RAS Ras subfamily o 97.5 0.00019 4.1E-09 66.3 6.2 22 274-295 2-23 (164)
354 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.5 0.0002 4.3E-09 67.5 6.1 24 272-295 15-38 (174)
355 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.5 0.00023 5.1E-09 65.9 6.5 22 274-295 4-25 (166)
356 CHL00071 tufA elongation facto 97.5 0.00016 3.4E-09 78.0 6.0 72 271-342 11-86 (409)
357 cd04140 ARHI_like ARHI subfami 97.5 0.00015 3.3E-09 67.4 5.0 23 273-295 2-24 (165)
358 cd04137 RheB Rheb (Ras Homolog 97.4 0.0002 4.3E-09 67.4 5.7 23 273-295 2-24 (180)
359 smart00178 SAR Sar1p-like memb 97.4 0.00022 4.7E-09 68.0 6.0 24 272-295 17-40 (184)
360 cd04170 EF-G_bact Elongation f 97.4 0.00084 1.8E-08 68.1 10.6 110 139-267 57-169 (268)
361 smart00175 RAB Rab subfamily o 97.4 0.00029 6.2E-09 64.8 6.6 22 274-295 2-23 (164)
362 COG5019 CDC3 Septin family pro 97.4 8.4E-05 1.8E-09 77.0 3.2 117 274-402 25-153 (373)
363 cd04142 RRP22 RRP22 subfamily. 97.4 0.00022 4.8E-09 69.0 5.9 22 274-295 2-23 (198)
364 cd00879 Sar1 Sar1 subfamily. 97.4 0.00024 5.3E-09 67.5 6.2 25 271-295 18-42 (190)
365 cd04156 ARLTS1 ARLTS1 subfamil 97.4 0.00018 3.9E-09 66.1 5.1 22 274-295 1-22 (160)
366 cd04136 Rap_like Rap-like subf 97.4 0.00026 5.7E-09 65.1 6.2 22 274-295 3-24 (163)
367 PRK05506 bifunctional sulfate 97.4 0.00018 3.8E-09 81.9 5.9 25 273-297 25-49 (632)
368 PLN03118 Rab family protein; P 97.4 0.00022 4.8E-09 69.4 5.8 57 273-343 15-74 (211)
369 cd04113 Rab4 Rab4 subfamily. 97.4 0.00022 4.8E-09 65.7 5.5 22 274-295 2-23 (161)
370 KOG1490 GTP-binding protein CR 97.4 6.4E-05 1.4E-09 80.2 2.0 59 272-344 168-228 (620)
371 KOG2486 Predicted GTPase [Gene 97.4 0.00021 4.6E-09 71.4 5.3 58 274-343 138-195 (320)
372 cd04118 Rab24 Rab24 subfamily. 97.4 0.00032 6.9E-09 67.0 6.4 22 274-295 2-23 (193)
373 cd04106 Rab23_lke Rab23-like s 97.4 0.00032 6.8E-09 64.6 6.1 22 274-295 2-23 (162)
374 cd01862 Rab7 Rab7 subfamily. 97.4 0.00037 7.9E-09 64.7 6.5 22 274-295 2-23 (172)
375 PRK12740 elongation factor G; 97.4 0.0021 4.5E-08 73.8 13.8 75 137-223 51-127 (668)
376 KOG0075 GTP-binding ADP-ribosy 97.4 0.0014 3E-08 59.5 9.6 150 93-269 22-180 (186)
377 KOG0088 GTPase Rab21, small G 97.4 0.00025 5.4E-09 64.9 5.0 101 148-267 64-171 (218)
378 TIGR00092 GTP-binding protein 97.4 0.00026 5.7E-09 74.6 5.8 59 273-344 3-80 (368)
379 KOG1491 Predicted GTP-binding 97.4 0.00022 4.9E-09 72.9 5.1 57 274-344 22-97 (391)
380 cd04102 RabL3 RabL3 (Rab-like3 97.3 0.0016 3.5E-08 63.4 10.7 64 148-223 56-144 (202)
381 KOG1145 Mitochondrial translat 97.3 0.0016 3.5E-08 70.4 11.5 107 147-267 202-312 (683)
382 cd04123 Rab21 Rab21 subfamily. 97.3 0.00046 9.9E-09 63.1 6.6 22 274-295 2-23 (162)
383 cd01865 Rab3 Rab3 subfamily. 97.3 0.00046 1E-08 64.1 6.6 22 274-295 3-24 (165)
384 cd01890 LepA LepA subfamily. 97.3 0.00027 5.9E-09 66.3 5.0 23 273-295 1-23 (179)
385 PRK09435 membrane ATPase/prote 97.3 0.0013 2.7E-08 68.8 10.3 108 145-271 148-260 (332)
386 cd01867 Rab8_Rab10_Rab13_like 97.3 0.00045 9.7E-09 64.3 6.4 23 273-295 4-26 (167)
387 KOG0098 GTPase Rab2, small G p 97.3 0.001 2.2E-08 62.8 8.5 101 148-267 57-164 (216)
388 cd04105 SR_beta Signal recogni 97.3 0.0011 2.4E-08 64.4 9.3 109 93-224 2-125 (203)
389 cd04151 Arl1 Arl1 subfamily. 97.3 0.00033 7.2E-09 64.5 5.3 22 274-295 1-22 (158)
390 PLN03127 Elongation factor Tu; 97.3 0.0004 8.7E-09 75.6 6.8 73 271-343 60-136 (447)
391 TIGR00503 prfC peptide chain r 97.3 0.0038 8.3E-08 69.4 14.4 123 89-223 9-147 (527)
392 cd04177 RSR1 RSR1 subgroup. R 97.3 0.00047 1E-08 64.2 6.2 22 274-295 3-24 (168)
393 TIGR00991 3a0901s02IAP34 GTP-b 97.3 0.0021 4.5E-08 66.2 11.3 155 34-224 5-169 (313)
394 cd00876 Ras Ras family. The R 97.3 0.00049 1.1E-08 62.8 6.1 22 274-295 1-22 (160)
395 cd04161 Arl2l1_Arl13_like Arl2 97.3 0.00036 7.8E-09 65.3 5.3 53 274-341 1-53 (167)
396 cd04158 ARD1 ARD1 subfamily. 97.3 0.00041 9E-09 64.9 5.7 22 274-295 1-22 (169)
397 COG3276 SelB Selenocysteine-sp 97.3 0.0033 7.2E-08 66.7 12.7 108 147-270 51-161 (447)
398 cd01864 Rab19 Rab19 subfamily. 97.3 0.00044 9.6E-09 64.1 5.6 23 273-295 4-26 (165)
399 cd04149 Arf6 Arf6 subfamily. 97.3 0.0004 8.7E-09 65.1 5.3 22 273-294 10-31 (168)
400 PRK12735 elongation factor Tu; 97.3 0.00037 8E-09 74.8 5.7 73 270-342 10-86 (396)
401 KOG0079 GTP-binding protein H- 97.2 0.0014 3.1E-08 59.4 8.3 101 149-268 60-166 (198)
402 KOG0395 Ras-related GTPase [Ge 97.2 0.0036 7.8E-08 60.6 11.7 149 93-269 5-163 (196)
403 cd04112 Rab26 Rab26 subfamily. 97.2 0.00061 1.3E-08 65.2 6.3 22 274-295 2-23 (191)
404 cd00157 Rho Rho (Ras homology) 97.2 0.00065 1.4E-08 62.9 6.4 22 274-295 2-23 (171)
405 cd04124 RabL2 RabL2 subfamily. 97.2 0.00049 1.1E-08 63.8 5.4 22 274-295 2-23 (161)
406 cd04169 RF3 RF3 subfamily. Pe 97.2 0.0016 3.4E-08 66.2 9.5 73 139-223 64-138 (267)
407 cd01893 Miro1 Miro1 subfamily. 97.2 0.00041 8.9E-09 64.6 4.9 22 274-295 2-23 (166)
408 cd04114 Rab30 Rab30 subfamily. 97.2 0.00079 1.7E-08 62.4 6.7 23 273-295 8-30 (169)
409 cd04144 Ras2 Ras2 subfamily. 97.2 0.00061 1.3E-08 65.1 6.1 22 274-295 1-22 (190)
410 PRK00049 elongation factor Tu; 97.2 0.00046 1E-08 74.1 5.6 72 271-342 11-86 (396)
411 cd04116 Rab9 Rab9 subfamily. 97.2 0.00081 1.8E-08 62.5 6.6 23 273-295 6-28 (170)
412 PRK00007 elongation factor G; 97.2 0.00054 1.2E-08 78.8 6.4 69 273-343 11-87 (693)
413 cd04132 Rho4_like Rho4-like su 97.2 0.00084 1.8E-08 63.6 6.8 22 274-295 2-23 (187)
414 PF10662 PduV-EutP: Ethanolami 97.2 0.00045 9.8E-09 63.2 4.3 23 273-295 2-24 (143)
415 cd04146 RERG_RasL11_like RERG/ 97.1 0.00065 1.4E-08 62.9 5.5 22 274-295 1-22 (165)
416 cd04109 Rab28 Rab28 subfamily. 97.1 0.00094 2E-08 65.3 6.8 22 274-295 2-23 (215)
417 TIGR00484 EF-G translation elo 97.1 0.00065 1.4E-08 78.1 6.5 70 273-344 11-88 (689)
418 cd04122 Rab14 Rab14 subfamily. 97.1 0.00088 1.9E-08 62.2 6.3 22 274-295 4-25 (166)
419 COG0012 Predicted GTPase, prob 97.1 0.00032 6.9E-09 73.1 3.5 36 274-323 4-39 (372)
420 TIGR00485 EF-Tu translation el 97.1 0.00065 1.4E-08 72.9 6.0 74 269-342 9-86 (394)
421 cd04168 TetM_like Tet(M)-like 97.1 0.00092 2E-08 66.7 6.6 23 274-296 1-23 (237)
422 KOG1490 GTP-binding protein CR 97.1 0.0022 4.7E-08 68.8 9.5 79 182-263 248-333 (620)
423 cd04135 Tc10 TC10 subfamily. 97.1 0.0011 2.4E-08 61.8 6.7 22 274-295 2-23 (174)
424 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.1 0.0009 2E-08 63.6 6.0 23 273-295 4-26 (183)
425 PTZ00133 ADP-ribosylation fact 97.1 0.0011 2.4E-08 63.0 6.6 23 272-294 17-39 (182)
426 cd04127 Rab27A Rab27a subfamil 97.1 0.0011 2.4E-08 62.3 6.4 22 274-295 6-27 (180)
427 cd04162 Arl9_Arfrp2_like Arl9/ 97.1 0.00074 1.6E-08 63.0 5.2 21 275-295 2-22 (164)
428 cd04169 RF3 RF3 subfamily. Pe 97.1 0.0012 2.6E-08 67.0 7.0 23 273-295 3-25 (267)
429 cd04176 Rap2 Rap2 subgroup. T 97.1 0.0012 2.5E-08 61.0 6.3 22 274-295 3-24 (163)
430 smart00174 RHO Rho (Ras homolo 97.0 0.0011 2.4E-08 61.8 6.1 21 275-295 1-21 (174)
431 KOG0081 GTPase Rab27, small G 97.0 0.0033 7.2E-08 57.7 8.7 101 148-267 69-177 (219)
432 cd00877 Ran Ran (Ras-related n 97.0 0.00097 2.1E-08 62.3 5.6 22 274-295 2-23 (166)
433 PRK12736 elongation factor Tu; 97.0 0.00087 1.9E-08 71.9 6.0 72 270-341 10-85 (394)
434 cd04170 EF-G_bact Elongation f 97.0 0.00084 1.8E-08 68.1 5.5 22 274-295 1-22 (268)
435 KOG0070 GTP-binding ADP-ribosy 97.0 0.0074 1.6E-07 57.0 11.1 152 91-270 17-177 (181)
436 cd04108 Rab36_Rab34 Rab34/Rab3 97.0 0.0015 3.3E-08 61.3 6.6 22 274-295 2-23 (170)
437 cd04111 Rab39 Rab39 subfamily. 97.0 0.0014 3E-08 64.1 6.5 23 273-295 3-25 (211)
438 cd04110 Rab35 Rab35 subfamily. 97.0 0.0014 3E-08 63.2 6.4 23 273-295 7-29 (199)
439 cd04125 RabA_like RabA-like su 97.0 0.0016 3.4E-08 62.0 6.6 22 274-295 2-23 (188)
440 cd04150 Arf1_5_like Arf1-Arf5- 97.0 0.0011 2.4E-08 61.4 5.4 21 274-294 2-22 (159)
441 KOG0087 GTPase Rab11/YPT3, sma 97.0 0.0022 4.8E-08 61.7 7.4 100 148-266 65-171 (222)
442 PF00009 GTP_EFTU: Elongation 97.0 0.00085 1.8E-08 64.1 4.6 26 273-298 4-29 (188)
443 cd00882 Ras_like_GTPase Ras-li 97.0 0.00077 1.7E-08 59.5 4.0 20 277-296 1-20 (157)
444 COG2262 HflX GTPases [General 97.0 0.00093 2E-08 70.3 5.1 59 274-344 194-253 (411)
445 cd04101 RabL4 RabL4 (Rab-like4 97.0 0.0017 3.6E-08 59.9 6.3 21 274-294 2-22 (164)
446 PRK12739 elongation factor G; 97.0 0.0011 2.3E-08 76.3 6.0 70 273-342 9-84 (691)
447 COG2229 Predicted GTPase [Gene 96.9 0.011 2.4E-07 55.8 11.6 156 93-268 12-175 (187)
448 TIGR00487 IF-2 translation ini 96.9 0.0014 3E-08 73.7 6.7 59 272-344 87-148 (587)
449 cd04115 Rab33B_Rab33A Rab33B/R 96.9 0.0019 4.1E-08 60.4 6.6 22 274-295 4-25 (170)
450 cd01883 EF1_alpha Eukaryotic e 96.9 0.0015 3.3E-08 64.1 6.2 69 274-342 1-88 (219)
451 PF08477 Miro: Miro-like prote 96.9 0.001 2.2E-08 58.0 4.4 23 274-296 1-23 (119)
452 smart00177 ARF ARF-like small 96.9 0.0013 2.9E-08 62.0 5.5 22 273-294 14-35 (175)
453 PLN00023 GTP-binding protein; 96.9 0.0035 7.5E-08 65.1 8.8 111 93-223 23-166 (334)
454 PLN03071 GTP-binding nuclear p 96.9 0.0015 3.2E-08 64.2 6.0 60 273-344 14-75 (219)
455 smart00053 DYNc Dynamin, GTPas 96.9 0.003 6.5E-08 63.1 8.1 22 274-295 28-49 (240)
456 cd04147 Ras_dva Ras-dva subfam 96.9 0.0017 3.7E-08 62.5 6.1 22 274-295 1-22 (198)
457 cd04107 Rab32_Rab38 Rab38/Rab3 96.9 0.0018 3.9E-08 62.5 6.3 22 274-295 2-23 (201)
458 cd01853 Toc34_like Toc34-like 96.9 0.0091 2E-07 60.0 11.2 130 87-225 27-166 (249)
459 cd01870 RhoA_like RhoA-like su 96.9 0.0024 5.1E-08 59.6 6.6 23 273-295 2-24 (175)
460 PLN03126 Elongation factor Tu; 96.8 0.0017 3.8E-08 71.2 6.3 73 270-342 79-155 (478)
461 PLN03110 Rab GTPase; Provision 96.8 0.0024 5.2E-08 62.6 6.7 23 273-295 13-35 (216)
462 smart00053 DYNc Dynamin, GTPas 96.8 0.0056 1.2E-07 61.1 9.1 90 135-224 113-208 (240)
463 PTZ00369 Ras-like protein; Pro 96.8 0.0021 4.6E-08 61.3 5.8 23 273-295 6-28 (189)
464 cd04130 Wrch_1 Wrch-1 subfamil 96.8 0.0033 7.1E-08 58.9 7.0 22 274-295 2-23 (173)
465 KOG0461 Selenocysteine-specifi 96.8 0.0068 1.5E-07 62.3 9.3 88 180-268 92-190 (522)
466 cd04105 SR_beta Signal recogni 96.8 0.0026 5.7E-08 61.8 6.2 22 274-295 2-23 (203)
467 cd04117 Rab15 Rab15 subfamily. 96.8 0.0032 6.8E-08 58.4 6.5 22 274-295 2-23 (161)
468 cd04148 RGK RGK subfamily. Th 96.8 0.002 4.4E-08 63.4 5.4 22 274-295 2-23 (221)
469 COG1217 TypA Predicted membran 96.7 0.012 2.7E-07 62.7 11.2 113 142-269 64-193 (603)
470 PRK10463 hydrogenase nickel in 96.7 0.0079 1.7E-07 61.5 9.5 54 210-268 232-286 (290)
471 TIGR00491 aIF-2 translation in 96.7 0.0019 4.2E-08 72.5 5.5 22 274-295 6-27 (590)
472 PLN00223 ADP-ribosylation fact 96.7 0.0024 5.2E-08 60.7 5.4 22 273-294 18-39 (181)
473 COG3596 Predicted GTPase [Gene 96.7 0.0096 2.1E-07 59.8 9.7 123 144-271 85-222 (296)
474 PLN03108 Rab family protein; P 96.7 0.0035 7.6E-08 61.1 6.6 22 274-295 8-29 (210)
475 TIGR00073 hypB hydrogenase acc 96.7 0.0045 9.8E-08 60.2 7.4 80 183-269 125-205 (207)
476 COG1100 GTPase SAR1 and relate 96.7 0.022 4.8E-07 55.2 12.1 153 92-268 6-182 (219)
477 cd04126 Rab20 Rab20 subfamily. 96.7 0.0029 6.4E-08 62.4 5.7 22 274-295 2-23 (220)
478 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.6 0.004 8.7E-08 58.6 6.4 22 274-295 4-25 (172)
479 TIGR00750 lao LAO/AO transport 96.6 0.0099 2.1E-07 61.4 9.7 107 144-269 125-236 (300)
480 COG1100 GTPase SAR1 and relate 96.6 0.0033 7.3E-08 61.0 5.9 24 273-296 6-29 (219)
481 PRK05306 infB translation init 96.6 0.0029 6.2E-08 73.2 6.2 60 271-344 289-350 (787)
482 cd04134 Rho3 Rho3 subfamily. 96.6 0.0041 8.8E-08 59.4 6.3 22 274-295 2-23 (189)
483 CHL00189 infB translation init 96.6 0.0026 5.6E-08 73.0 5.6 58 271-342 243-306 (742)
484 COG5256 TEF1 Translation elong 96.6 0.018 3.8E-07 60.9 11.3 106 144-261 83-201 (428)
485 PF06858 NOG1: Nucleolar GTP-b 96.6 0.0074 1.6E-07 46.2 6.1 41 179-219 11-58 (58)
486 KOG0090 Signal recognition par 96.6 0.061 1.3E-06 52.2 13.7 109 92-224 39-161 (238)
487 KOG1486 GTP-binding protein DR 96.6 0.0019 4.1E-08 63.7 3.6 72 253-344 49-122 (364)
488 KOG0086 GTPase Rab4, small G p 96.6 0.0099 2.2E-07 54.3 7.9 96 148-262 60-162 (214)
489 TIGR00475 selB selenocysteine- 96.6 0.004 8.7E-08 70.1 6.7 57 274-341 2-60 (581)
490 cd01874 Cdc42 Cdc42 subfamily. 96.5 0.0058 1.3E-07 57.7 6.8 22 274-295 3-24 (175)
491 PF08477 Miro: Miro-like prote 96.5 0.0013 2.9E-08 57.3 2.2 107 94-219 2-119 (119)
492 PRK04004 translation initiatio 96.5 0.002 4.4E-08 72.4 4.1 23 273-295 7-29 (586)
493 cd01882 BMS1 Bms1. Bms1 is an 96.5 0.0041 8.9E-08 61.5 5.8 25 271-295 38-62 (225)
494 cd01871 Rac1_like Rac1-like su 96.5 0.0028 6.1E-08 59.8 4.4 22 274-295 3-24 (174)
495 cd01885 EF2 EF2 (for archaea a 96.5 0.0043 9.3E-08 61.3 5.8 24 273-296 1-24 (222)
496 TIGR00483 EF-1_alpha translati 96.5 0.0048 1E-07 66.9 6.5 72 271-342 6-96 (426)
497 TIGR00101 ureG urease accessor 96.5 0.0075 1.6E-07 58.5 7.2 81 182-269 113-194 (199)
498 cd04143 Rhes_like Rhes_like su 96.5 0.0052 1.1E-07 61.7 6.2 22 274-295 2-23 (247)
499 KOG0076 GTP-binding ADP-ribosy 96.4 0.0089 1.9E-07 55.9 7.0 110 146-269 69-185 (197)
500 TIGR02034 CysN sulfate adenyly 96.4 0.0062 1.3E-07 65.7 6.4 24 274-297 2-25 (406)
No 1
>PRK13796 GTPase YqeH; Provisional
Probab=100.00 E-value=6.2e-73 Score=595.22 Aligned_cols=364 Identities=36% Similarity=0.610 Sum_probs=308.7
Q ss_pred cccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhh
Q 008807 100 SCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLR 179 (553)
Q Consensus 100 ~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~ 179 (553)
+|+|||+.||++|++.|||+++..+. +..+..+.+|+|||.+.||+.+.++. ...++|.+.++++.
T Consensus 2 ~C~GCG~~lq~~~~~~~Gy~p~~~~~---~~~~~~~~~C~RC~~l~hy~~~~~~~-----------~~~~~~~~~l~~i~ 67 (365)
T PRK13796 2 RCIGCGAAIQTEDKNKPGYAPASALK---KGLETEEVYCQRCFRLKHYNEIQDVS-----------LTDDDFLKLLNGIG 67 (365)
T ss_pred cccCCCceeEcCCCCCCCCCCHHHhh---cccccCCeEchhhhhhhccCcccCCC-----------CCHHHHHHHHHhhc
Confidence 79999999999999999999975542 21223379999999999998877652 34678988888876
Q ss_pred hcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccCh
Q 008807 180 REKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGI 259 (553)
Q Consensus 180 ~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi 259 (553)
...++|++|||+.|+..++.+.+.+..+++|+++|+||+||++.....+.+.+|+.......++...+++++||++++|+
T Consensus 68 ~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI 147 (365)
T PRK13796 68 DSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGI 147 (365)
T ss_pred ccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCH
Confidence 55559999999999999999999887778999999999999986655566777765544433444447899999999999
Q ss_pred hhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcC
Q 008807 260 VGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTP 339 (553)
Q Consensus 260 ~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTP 339 (553)
++|++.|.+..+++++++||.||||||||||+|++..... ....++|++||||++.+.+.+ .++..|+|||
T Consensus 148 ~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~--------~~~~~~s~~pGTT~~~~~~~l-~~~~~l~DTP 218 (365)
T PRK13796 148 DELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEITGE--------KDVITTSRFPGTTLDKIEIPL-DDGSFLYDTP 218 (365)
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhccCc--------cceEEecCCCCccceeEEEEc-CCCcEEEECC
Confidence 9999999888788899999999999999999999753211 124568999999999888774 5678999999
Q ss_pred CccCCCccccccCcCcccccccccccCCceeecccccccCccccccccCCcEEEEeeeEeEEeeccCCceEEEEEcCCCc
Q 008807 340 GVHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVISETETNNEFKSHGLNGFTIFWGGLVRIDLLKVLPETCLTFYGPKSL 419 (553)
Q Consensus 340 Gi~~~~~~~~~l~~~~l~~l~p~~~l~~~~~~~~~~h~e~~c~~~~~~~g~sl~~GGL~rid~l~~~~~~~~t~~~s~~l 419 (553)
|+..++++.+++++++++.++|.++++|++|+.+ +|||||+|||+|||++++. ...|++|+|+++
T Consensus 219 Gi~~~~~~~~~l~~~~l~~~~p~k~i~p~~~~l~--------------~gq~l~~ggl~r~d~~~~~-~~~~~~~~~~~l 283 (365)
T PRK13796 219 GIIHRHQMAHYLSAKDLKIISPKKEIKPKTYQLN--------------EEQTLFLGGLARFDYVSGG-RRSFTAYFDNNL 283 (365)
T ss_pred CccccchhhhcCCHHHHhhcCCCcccCceEEEEC--------------CCCEEEEeeEEEEEEecCC-ccEEEEEcCCCc
Confidence 9999999999999999999999999999999854 7999999999999999884 678999999999
Q ss_pred ccccccCccHHHHHHHhcCCcccCCCCccccccCCCCceeEEEEEeecCCCCCcccEEEcccccEEeeccccccccCCcc
Q 008807 420 QVYMVPTDKADEFYQKELGVTLTPPIGKQKAEGWKGLDRERLLEIKFEDTERPASDVAISGLGWISVEPVRRSIRNSDIN 499 (553)
Q Consensus 420 ~~h~~~~~~a~~~~~~~~g~~l~Pp~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~Divi~glGwi~v~~~g~~~~~~~~~ 499 (553)
++|+|++|+|+++|++|+|.+|.||+. +++++|+++..+ ++.+. +.+||||+|||||+|++
T Consensus 284 ~~H~t~~e~a~~~~~~~~g~~l~pp~~-~~~~~~~~~~~~-~~~~~------~~~Divi~glGwi~v~~----------- 344 (365)
T PRK13796 284 NIHRTKLEKADALYEKHLGDLLTPPTK-EELEDFPPLVRH-EFTIK------EKTDIVFSGLGWITVPG----------- 344 (365)
T ss_pred eeeeccccchhHHHHhhCCCCCCCCch-hHHhhccCceeE-EEEEC------CcccEEEcCCceEEECC-----------
Confidence 999999999999999999999999975 556778888875 36662 35899999999999983
Q ss_pred cccCCCceEEEEEccCCeEEEecCCCc
Q 008807 500 LESTSGELHLAVHVPKPVEVFVRNPMP 526 (553)
Q Consensus 500 ~~~~~g~~~~~v~~P~gv~v~~R~pl~ 526 (553)
+..+++|+|+||+|++|+||+
T Consensus 345 ------~~~~~~~~p~gv~v~~R~~li 365 (365)
T PRK13796 345 ------GAKVAAWAPKGVDVVIRKALI 365 (365)
T ss_pred ------CeEEEEEecCCceEEeecccC
Confidence 456899999999999999985
No 2
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=100.00 E-value=6.4e-69 Score=564.15 Aligned_cols=360 Identities=36% Similarity=0.617 Sum_probs=310.1
Q ss_pred ccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhh
Q 008807 101 CYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRR 180 (553)
Q Consensus 101 C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~ 180 (553)
|.|||+.||++|++.+||++...|+. .+.+|+|||.+.||+.+.++. ...+.|++.+..+..
T Consensus 1 C~GCG~~lq~~d~~~~Gy~p~~~~~~-------~~~~C~RC~~l~hy~~~~~~~-----------~~~e~f~~~l~~~~~ 62 (360)
T TIGR03597 1 CIGCGAAIQTTDPKKPGYTPKSALEK-------EEVYCQRCFRLKHYNEIQDVE-----------LNDDDFLNLLNSLGD 62 (360)
T ss_pred CCCCCceeEcCCCCCCCCCchHHcCc-------CCeeecchhhhhccCccccCC-----------CCHHHHHHHHhhccc
Confidence 99999999999999999999765542 289999999999998776641 346789998998888
Q ss_pred cccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChh
Q 008807 181 EKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIV 260 (553)
Q Consensus 181 ~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~ 260 (553)
.+++|++|+|+.|++.++.+.+.+.++++|+++|+||+||+++....+.+.+|+.+.....++...+++++||++++|++
T Consensus 63 ~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~ 142 (360)
T TIGR03597 63 SNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGID 142 (360)
T ss_pred CCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHH
Confidence 99999999999999999999988877789999999999999876556667778755444444433468999999999999
Q ss_pred hhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCC
Q 008807 261 GVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPG 340 (553)
Q Consensus 261 ~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPG 340 (553)
+|++.|.+...+.++++||.||||||||||+|++..... ...+++|+.||||++.+.+.. ..+.+||||||
T Consensus 143 eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~~~~~~--------~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG 213 (360)
T TIGR03597 143 ELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLKQNNGD--------KDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPG 213 (360)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhhccCC--------cceeeecCCCCeEeeEEEEEe-CCCCEEEECCC
Confidence 999999887778899999999999999999999864322 124578999999999887763 46778999999
Q ss_pred ccCCCccccccCcCcccccccccccCCceeecccccccCccccccccCCcEEEEeeeEeEEeeccCCceEEEEEcCCCcc
Q 008807 341 VHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVISETETNNEFKSHGLNGFTIFWGGLVRIDLLKVLPETCLTFYGPKSLQ 420 (553)
Q Consensus 341 i~~~~~~~~~l~~~~l~~l~p~~~l~~~~~~~~~~h~e~~c~~~~~~~g~sl~~GGL~rid~l~~~~~~~~t~~~s~~l~ 420 (553)
+...+++.+++++++++.++|.+++++.+|..+ +||++|+|||+|||++++ +...|++|++++++
T Consensus 214 ~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~--------------~~q~~~~ggl~~~d~~~~-~~~~~~~~~~~~~~ 278 (360)
T TIGR03597 214 IINSHQMAHYLDKKDLKYITPKKEIKPKTYQLN--------------PNQTLFLGGLARFDYLKG-EKTSFTFYVSNELN 278 (360)
T ss_pred CCChhHhhhhcCHHHHhhcCCCCccCceEEEeC--------------CCCEEEEceEEEEEEecC-CceEEEEEccCCce
Confidence 999999999999999999999999999998855 699999999999999998 57789999999999
Q ss_pred cccccCccHHHHHHHhcCCcccCCCCccccccCCCCceeEEEEEeecCCCCCcccEEEcccccEEeeccccccccCCccc
Q 008807 421 VYMVPTDKADEFYQKELGVTLTPPIGKQKAEGWKGLDRERLLEIKFEDTERPASDVAISGLGWISVEPVRRSIRNSDINL 500 (553)
Q Consensus 421 ~h~~~~~~a~~~~~~~~g~~l~Pp~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~Divi~glGwi~v~~~g~~~~~~~~~~ 500 (553)
+|+|++++|+++|++|+|.+|.||+ .+++.+++.+..+ .+.+. +.+||||+|||||+|++
T Consensus 279 ~h~t~~~~a~~~~~~~~g~~l~pp~-~~~~~~~~~~~~~-~~~~~------~~~divi~glGwi~v~~------------ 338 (360)
T TIGR03597 279 IHRTKLENADELYNKHLGNLLSPPC-LDDKFNLPELVFH-TFTIK------EKTDIVFSGLGWITVKR------------ 338 (360)
T ss_pred eEeechhhhHHHHHhhcCCcCCCCC-hHHHHhccCceeE-EEEEC------CcccEEEecCcEEEEec------------
Confidence 9999999999999999999999996 4556778888765 46663 24899999999999995
Q ss_pred ccCCCceEEEEEccCCeEEEecCCCc
Q 008807 501 ESTSGELHLAVHVPKPVEVFVRNPMP 526 (553)
Q Consensus 501 ~~~~g~~~~~v~~P~gv~v~~R~pl~ 526 (553)
|+..+++|+|+||+|++|+||+
T Consensus 339 ----~~~~~~~~~p~gv~v~~R~~li 360 (360)
T TIGR03597 339 ----GGAKVKVYAPKGVGVSLRKALI 360 (360)
T ss_pred ----CCEEEEEEeCCceEEEEecccC
Confidence 3578999999999999999985
No 3
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=100.00 E-value=3.3e-58 Score=479.82 Aligned_cols=419 Identities=30% Similarity=0.463 Sum_probs=336.5
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhcc-CccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHH-QFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~-~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
..+.++..|.|||+.+.+.+...+||.+.+.|....+.. ..-..+|.+|.++.|+..-.|.. .....+
T Consensus 32 ~~p~~~v~c~~~~~~~~c~s~s~~~~~P~~~~~~~~d~d~~~~~~~cpgc~~l~~~~~~~~~~-----------v~~~~y 100 (572)
T KOG1249|consen 32 RLPASSVNCSGCGAELHCQSASSPGYLPLEIFLRLSERDGFLAAIVCPGCGFLEHMRAALAVP-----------VVPGEY 100 (572)
T ss_pred CCCCccceecCCCceEEEeccCCCCCCchHhhccccccccccccccCCcchHHHHhhhhccCc-----------cChhhh
Confidence 557788899999999999999999999988765432211 13468999999888876655442 234455
Q ss_pred HHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHh--------hccc
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATT--------KKKL 243 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~--------~~~l 243 (553)
.+...+..++-.++..|||.+|.+.++.+.+...++....+++.||+||++.+...-.... +..... -+++
T Consensus 101 ~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~r-c~~l~~~~~vk~~~~en~ 179 (572)
T KOG1249|consen 101 KKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQR-CHSLLHYGMIKAGGGENL 179 (572)
T ss_pred hhhhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccccccchHHHH-HHhhcccceeecccccCC
Confidence 5555555555578889999999999888888877776667999999999998753211111 111000 0122
Q ss_pred ----CceeEEEeccCCccChhhhHHHHHHhhc-ccceEEeccCCCChhHHHHHHHhhhCCCChhhh--------------
Q 008807 244 ----NVLSVHLTSSKSLAGIVGVASEIQKEKK-GRDVYILGSANVGKSAFINALLKKMGERDPAAA-------------- 304 (553)
Q Consensus 244 ----~~~~vi~iSAk~g~gi~~Ll~~L~~~~~-g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~-------------- 304 (553)
++..+..+|++++.|+++|+..|.+... ..+++.+|++||||||++|+|+..+.++.....
T Consensus 180 ~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df~Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTt 259 (572)
T KOG1249|consen 180 NPDFDFDHVDLIRAKTGYGIEELIVMLVDIVDFRGDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTT 259 (572)
T ss_pred CcccchhhhhhhhhhhcccHHHHHHHhhheeeccCceeeeeecccchhhHHHHHhhhccccccccceeeeeecccCCccc
Confidence 2556788999999999999998887543 348999999999999999999988655210000
Q ss_pred --------------------------------------------------------------------------hhhhcC
Q 008807 305 --------------------------------------------------------------------------MAQKYR 310 (553)
Q Consensus 305 --------------------------------------------------------------------------~~~~~~ 310 (553)
-++..+
T Consensus 260 lsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~~~~~~~ag~~~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~ 339 (572)
T KOG1249|consen 260 LSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLLALETGDAGKAGPVAAVGRTFAGSEELINAMAKELHADVEA 339 (572)
T ss_pred cchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHHHhhhhccccccchHHhhhhhhccchhhhhhhhhhccchhc
Confidence 001123
Q ss_pred CccCCCCCceeecEEEE-eecCCcEEEEcCCccCCCccccccCcCcccccccccccCCceeecccccccCccccccccCC
Q 008807 311 PIQSAVPGTTLGPIQID-AFLGGGKLYDTPGVHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVISETETNNEFKSHGLNG 389 (553)
Q Consensus 311 ~~~S~~PGTT~~~i~i~-~~~~~~~liDTPGi~~~~~~~~~l~~~~l~~l~p~~~l~~~~~~~~~~h~e~~c~~~~~~~g 389 (553)
.+.++.||||++.+++. ++..+.++|||||+.+++|++..++.||+..+.|...|+|++|.. .||
T Consensus 340 ~~e~~vPgtTLg~~ri~~i~~~~~w~YDTPG~~~~~q~~~llt~eEl~~v~p~~~lrprtf~v--------------kpG 405 (572)
T KOG1249|consen 340 LAEEPVPGTTLGIRRIEGIFKRGAWLYDTPGVLNPNQILSLLTSEELLNVTPRRVLRPRTFRV--------------KPG 405 (572)
T ss_pred cccCCCCcccccceeeeccccccceeecCCCccChhhhhhhccHHHhhhcCcccccccceEEc--------------CCC
Confidence 35667888888877776 566778999999999999999999999999999999999999973 479
Q ss_pred cEEEEeeeEeEEeeccCCce-EEEEEcCCCcccccccCccHHHHHHHhcCCccc--CCCCccccccCCCCceeEEEEE-e
Q 008807 390 FTIFWGGLVRIDLLKVLPET-CLTFYGPKSLQVYMVPTDKADEFYQKELGVTLT--PPIGKQKAEGWKGLDRERLLEI-K 465 (553)
Q Consensus 390 ~sl~~GGL~rid~l~~~~~~-~~t~~~s~~l~~h~~~~~~a~~~~~~~~g~~l~--Pp~~~~~~~~~~~l~~~~~~~i-~ 465 (553)
+|+|||||+|||++++.+.+ +||+|+|+.|++|+++|++|++||++|+|..|. ||++++||.+||+++.++ +.+ .
T Consensus 406 ~sl~iGGl~RLDilqa~~~~~~~Tv~as~~Lplhi~~t~~Ae~~y~~~~G~rll~vPp~genRm~ewpgl~~k~-~~~~~ 484 (572)
T KOG1249|consen 406 YSLFIGGLVRLDILQASVETQYFTVFASEQLPLHIGPTEEAEAFYEKHLGTRLLLVPPGGENRMTEWPGLQGKD-GEVME 484 (572)
T ss_pred cEEEEeeeEEeehhhccccceEEEEEecCcceeeecchhhHHHHHHHhcCCeeeecCCcchhhHhhCCCccccc-ceeec
Confidence 99999999999999998777 999999999999999999999999999999875 999999999999999875 777 5
Q ss_pred ecCCCCC-cccEEEcccccEEeeccccccccCCcccccCCCceEEEEEccCCeEEEec-CCC----------cCCCCCcc
Q 008807 466 FEDTERP-ASDVAISGLGWISVEPVRRSIRNSDINLESTSGELHLAVHVPKPVEVFVR-NPM----------PVGKAGAE 533 (553)
Q Consensus 466 ~~~~~~~-~~Divi~glGwi~v~~~g~~~~~~~~~~~~~~g~~~~~v~~P~gv~v~~R-~pl----------~~~~~~~~ 533 (553)
+..|+.+ ++||+|||||||+|++. +.+++++|+|+|++|++| +|| .+|++...
T Consensus 485 G~~~d~~~~~DI~lSslGWvsv~~~---------------~~~~L~~~Tp~~~~it~Ri~pllP~~a~~~G~~i~~S~ay 549 (572)
T KOG1249|consen 485 GRNWDERGSCDIALSSLGWVSVTLK---------------GDATLRAWTPEGAGITARIPPLLPYRASLFGKRIPKSVAY 549 (572)
T ss_pred ccccccccccceEecccceEEeecC---------------cceeecccccccCceEEecCcccccchhhcceecccceee
Confidence 6667766 99999999999999973 578999999999999999 776 35668889
Q ss_pred ceeeeccchhhhcccCCcCC
Q 008807 534 WYQYRELTETELEVRPKWYF 553 (553)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~ 553 (553)
||+|.+++....+.|+||++
T Consensus 550 ~~q~~~~p~~~k~~R~k~~k 569 (572)
T KOG1249|consen 550 KTQPIQFPVVIKRVRKKKRK 569 (572)
T ss_pred eecccCcchHHHHhhhhhcc
Confidence 99999999999999999985
No 4
>COG2262 HflX GTPases [General function prediction only]
Probab=99.98 E-value=3e-32 Score=279.95 Aligned_cols=224 Identities=21% Similarity=0.276 Sum_probs=174.3
Q ss_pred ccccceeeccccCCCCCcCCCCCCcCCCCCCcchHHHHHHHHHHHHHHHHHHH--------HHhhh---cccccccccCC
Q 008807 30 YTKPTLIVCKSTLSPETQFESDGAGAAAPTRGDRFLELQKAKEAAKVVVRDSK--------KKRKK---KDKVLKVNSAV 98 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~g~g~~gp~~ge~~~e~~~~~~~~~~~~~~~~--------~~~r~---~~~~~~~~~~~ 98 (553)
|.+|||.+.|++++++ |||||+||| ||+++|.++|..+.++...+++ +.+|+ +.....++++|
T Consensus 126 Y~lpRl~~~~~~l~~~----GggiG~rGp--GE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvG 199 (411)
T COG2262 126 YELPRLVGSGSHLSRL----GGGIGFRGP--GETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVG 199 (411)
T ss_pred hhhhHhHhhhhhcccc----cCCCCCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEe
Confidence 8899999999999943 499999999 9999999998888888665443 33333 33344899999
Q ss_pred CcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC-CccEEEecCCCCCccCCCccccHHHHHHHHHH
Q 008807 99 ASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS-HGHMITAVGGNGGYAGGKQFVSADELREKLSH 177 (553)
Q Consensus 99 ~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~-~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~ 177 (553)
|||+|++++|+.... ..-|..+..|+|| |++.+|+.+.+ ....+.|| ||||+++|+.+.++|+++|++
T Consensus 200 YTNAGKSTL~N~LT~-~~~~~~d~LFATL-------dpttR~~~l~~g~~vlLtDT---VGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 200 YTNAGKSTLFNALTG-ADVYVADQLFATL-------DPTTRRIELGDGRKVLLTDT---VGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred eccccHHHHHHHHhc-cCeeccccccccc-------cCceeEEEeCCCceEEEecC---ccCcccCChHHHHHHHHHHHH
Confidence 999999999998875 5779999999999 99999999874 44556665 999999999999999999999
Q ss_pred hhhcccEEEEEcccCCCChhhHHHH-------HHH-hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEE
Q 008807 178 LRREKALIVKLVDIVDFNGSFLARI-------RDL-AGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVH 249 (553)
Q Consensus 178 ~~~~adlIl~VVD~~d~~~s~~~~l-------~~~-~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi 249 (553)
+. +||+++||||++|+. +...+ .++ +...|+|+|+||+|+++.......+. ... ...+
T Consensus 269 ~~-~aDlllhVVDaSdp~--~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~---------~~~--~~~v 334 (411)
T COG2262 269 VK-EADLLLHVVDASDPE--ILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELE---------RGS--PNPV 334 (411)
T ss_pred hh-cCCEEEEEeecCChh--HHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhh---------hcC--CCeE
Confidence 76 999999999999984 22222 222 24689999999999987653111111 111 2579
Q ss_pred EeccCCccChhhhHHHHHHhhccc---ceEEeccCCCC
Q 008807 250 LTSSKSLAGIVGVASEIQKEKKGR---DVYILGSANVG 284 (553)
Q Consensus 250 ~iSAk~g~gi~~Ll~~L~~~~~g~---~v~ivG~~NVG 284 (553)
++||+++.|++.|.+.|.+.+... ..+.+...+.|
T Consensus 335 ~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~~~~~ 372 (411)
T COG2262 335 FISAKTGEGLDLLRERIIELLSGLRTEVTLELPYTDAG 372 (411)
T ss_pred EEEeccCcCHHHHHHHHHHHhhhcccceEEEcCccccc
Confidence 999999999999999988765532 34555555666
No 5
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=1.6e-32 Score=283.91 Aligned_cols=307 Identities=26% Similarity=0.330 Sum_probs=224.5
Q ss_pred EEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEE
Q 008807 137 LCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVT 216 (553)
Q Consensus 137 ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlN 216 (553)
.|+||+...|+..+.+.+|. ...+..++.+.++..|+|+.|+|++||.++..+.+..+++.++.++|+|
T Consensus 1 ~~~~~~~~~~~~~i~~~~g~-----------~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlN 69 (322)
T COG1161 1 QCQRCFRLKHYNKIQWFPGH-----------MKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLN 69 (322)
T ss_pred CchhhhHHHhcccccCCCCc-----------hHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEe
Confidence 38899998888776665432 5788888999999999999999999999999999999988999999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhH--------HHHHHhhcc------cceEEeccCC
Q 008807 217 KVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVA--------SEIQKEKKG------RDVYILGSAN 282 (553)
Q Consensus 217 KiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll--------~~L~~~~~g------~~v~ivG~~N 282 (553)
|+||+|... ..+|........ + ..++.+|++.+.+...+. +.+....+. .+++|||.||
T Consensus 70 K~DL~~~~~----~~~W~~~~~~~~--~-~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PN 142 (322)
T COG1161 70 KADLAPKEV----TKKWKKYFKKEE--G-IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPN 142 (322)
T ss_pred hhhcCCHHH----HHHHHHHHHhcC--C-CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCC
Confidence 999998753 455643222211 2 346778888877777666 333333332 5799999999
Q ss_pred CChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccCCCccccccCcCcccccccc
Q 008807 283 VGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLHHRQAAVVHAEDLPALAPQ 362 (553)
Q Consensus 283 VGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~~~~~~~~l~~~~l~~l~p~ 362 (553)
||||||||+|+++ ..+++|+.||+|++...+. ...+.+|+|||||..++...+ ...+..++|.
T Consensus 143 VGKSslIN~L~~k-------------~~~~~s~~PG~Tk~~q~i~-~~~~i~LlDtPGii~~~~~~~---~~v~~~l~~~ 205 (322)
T COG1161 143 VGKSTLINRLLGK-------------KVAKTSNRPGTTKGIQWIK-LDDGIYLLDTPGIIPPKFDDD---ELVLLKLAPK 205 (322)
T ss_pred CcHHHHHHHHhcc-------------cceeeCCCCceecceEEEE-cCCCeEEecCCCcCCCCccch---HHHhhccccc
Confidence 9999999999986 2356899999999877776 467889999999998874332 5666778888
Q ss_pred cccCCceeecccccccCccccccccCCcEEEEeeeEeEEeeccCCceEEEEEcCCCcccccccCccHHHHHHHhcCCccc
Q 008807 363 SRLRGQSFAVISETETNNEFKSHGLNGFTIFWGGLVRIDLLKVLPETCLTFYGPKSLQVYMVPTDKADEFYQKELGVTLT 442 (553)
Q Consensus 363 ~~l~~~~~~~~~~h~e~~c~~~~~~~g~sl~~GGL~rid~l~~~~~~~~t~~~s~~l~~h~~~~~~a~~~~~~~~g~~l~ 442 (553)
..++...++.. ..+..++++++ ++.... ....+..|.++. +|.++.+.+.+.+.++.|.+|.
T Consensus 206 ~~Ik~~~~~~~--------------~v~~~~~~~~~-~~~~~~-~~~~~~~y~~~~--~~~~~~~~~l~~~a~~rg~~l~ 267 (322)
T COG1161 206 GEIKDPVLPAD--------------EVAERLLGGLL-IDEHYG-EKLNITRYESNP--IHRTDPEEFLELIAKKRGWLLL 267 (322)
T ss_pred cccCccccChH--------------HHHHHHHhhhh-hhhhhh-HhhCCccccccc--ccccCHHHHHHHHHHHhhhhhc
Confidence 88887777644 35566667776 444433 233444566666 8999999999999999998887
Q ss_pred CCCCccccccCCCCceeEEEEEeecCCCCCcccEEEcccccEEeeccccccccCCcccccCCCceEEEEEccCCeEEEec
Q 008807 443 PPIGKQKAEGWKGLDRERLLEIKFEDTERPASDVAISGLGWISVEPVRRSIRNSDINLESTSGELHLAVHVPKPVEVFVR 522 (553)
Q Consensus 443 Pp~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~Divi~glGwi~v~~~g~~~~~~~~~~~~~~g~~~~~v~~P~gv~v~~R 522 (553)
+++..+ +.... ..+- -|++.++|||+++.... ........|.|+++.+.+|
T Consensus 268 ~~g~~d-------~~~~~-~~~~--------~d~~~gklg~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 318 (322)
T COG1161 268 KGGEPD-------LERAA-ETIL--------KDIRNGKLGWFSLEEPE-------------DNIEVVTIRDPEGSVVKAR 318 (322)
T ss_pred CCCCcc-------HHHHH-HHHH--------HHHHhCCcceeecCCcc-------------ccchhhhhhccchhhhhhh
Confidence 776211 11110 1111 29999999999998641 1122357888888888887
Q ss_pred CCC
Q 008807 523 NPM 525 (553)
Q Consensus 523 ~pl 525 (553)
.++
T Consensus 319 ~~~ 321 (322)
T COG1161 319 KSL 321 (322)
T ss_pred ccc
Confidence 654
No 6
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.96 E-value=5.7e-29 Score=239.07 Aligned_cols=188 Identities=42% Similarity=0.633 Sum_probs=139.5
Q ss_pred EEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEc
Q 008807 138 CGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTK 217 (553)
Q Consensus 138 c~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNK 217 (553)
|+||+.+.|++.+... .....+.|+.++.++.+++|+|++|+|+++++.++...+.....++|+++|+||
T Consensus 1 C~rC~~l~~~~~~~~~----------~~~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK 70 (190)
T cd01855 1 CQRCFRLKHYNKIDPV----------EIPDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNK 70 (190)
T ss_pred CcchhhhhccCccccc----------cCChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEc
Confidence 9999999998776542 122345578999999999999999999999876666666443356899999999
Q ss_pred ccCCCCCCChhhHHHHHHHH-HhhcccCceeEEEeccCCccChhhhHHHHHHhh-cccceEEeccCCCChhHHHHHHHhh
Q 008807 218 VDLLPKGTDFNCVGDWVVEA-TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK-KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 218 iDLl~~~~~~~~~~~~~~~~-~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~-~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|+++.......+..|.... .....+....++.+||++++|+++|++.|.+.+ .+.+++++|.||||||||||+|++.
T Consensus 71 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 71 IDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred hhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHh
Confidence 99987654333344443111 111222234689999999999999999998765 3458999999999999999999987
Q ss_pred hCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCc
Q 008807 296 MGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGV 341 (553)
Q Consensus 296 ~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi 341 (553)
...+.. ....+.+|..||||++...+.. ..+.+|+|||||
T Consensus 151 ~~~~~~-----~~~~~~~~~~~gtT~~~~~~~~-~~~~~~~DtPG~ 190 (190)
T cd01855 151 DNGKKK-----LKDLLTTSPIPGTTLDLIKIPL-GNGKKLYDTPGI 190 (190)
T ss_pred cccccc-----cccccccCCCCCeeeeeEEEec-CCCCEEEeCcCC
Confidence 443210 1134568899999999877764 447899999997
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=249.52 Aligned_cols=222 Identities=23% Similarity=0.242 Sum_probs=172.8
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
..++++|-.|.|++++|+.......--+.+- .+-+||+++..|.+.++.+.++||+|+. ...+..+.+.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~-------pGvTRDr~y~~~~~~~~~f~lIDTgGl~---~~~~~~l~~~i 73 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT-------PGVTRDRIYGDAEWLGREFILIDTGGLD---DGDEDELQELI 73 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC-------CCCccCCccceeEEcCceEEEEECCCCC---cCCchHHHHHH
Confidence 3588999999999999988776544333221 1346799999999999999999998763 22233567889
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC----hhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCcee
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN----GSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLS 247 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~----~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (553)
+++...++.+||+||+|||+..-. ..+...|+. .++|+|+|+||+|-...+ ....++ ..+++.+
T Consensus 74 ~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e---~~~~ef-------yslG~g~ 141 (444)
T COG1160 74 REQALIAIEEADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAE---ELAYEF-------YSLGFGE 141 (444)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhh---hhHHHH-------HhcCCCC
Confidence 999999999999999999987632 333333332 569999999999976322 112222 4567778
Q ss_pred EEEeccCCccChhhhHHHHHHhh------------cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCC
Q 008807 248 VHLTSSKSLAGIVGVASEIQKEK------------KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSA 315 (553)
Q Consensus 248 vi~iSAk~g~gi~~Ll~~L~~~~------------~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~ 315 (553)
++.|||.+|.|+.+|++++.+.+ ...+++++|.||||||||+|+|++. .|.++|+
T Consensus 142 ~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilge-------------eR~Iv~~ 208 (444)
T COG1160 142 PVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGE-------------ERVIVSD 208 (444)
T ss_pred ceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccC-------------ceEEecC
Confidence 99999999999999999887764 1368999999999999999999986 5789999
Q ss_pred CCCceeecEEEEeecCCc--EEEEcCCccCCCccc
Q 008807 316 VPGTTLGPIQIDAFLGGG--KLYDTPGVHLHHRQA 348 (553)
Q Consensus 316 ~PGTT~~~i~i~~~~~~~--~liDTPGi~~~~~~~ 348 (553)
+||||||.|...+..++. .+|||.|++....+.
T Consensus 209 ~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~ 243 (444)
T COG1160 209 IAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT 243 (444)
T ss_pred CCCccccceeeeEEECCeEEEEEECCCCCcccccc
Confidence 999999999988764444 799999999775443
No 8
>PRK12289 GTPase RsgA; Reviewed
Probab=99.95 E-value=6.6e-28 Score=251.36 Aligned_cols=228 Identities=19% Similarity=0.182 Sum_probs=151.8
Q ss_pred ceEEEEEEecCCccEEEecCCCCCccCCC--c-cccHHHH---HHH-HHHhhhcccEEEEEcccCCCC--hhhHHHHHHH
Q 008807 135 TVLCGRCRLLSHGHMITAVGGNGGYAGGK--Q-FVSADEL---REK-LSHLRREKALIVKLVDIVDFN--GSFLARIRDL 205 (553)
Q Consensus 135 d~ic~Rc~~l~~~~~~~dTaG~vgf~~~~--~-~~l~e~~---~~~-l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~ 205 (553)
...|.++..++++...+.++|+|.+.... . ...++.+ ++. ....+.++|.|++|+|+.+++ ...++++...
T Consensus 36 ~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~ 115 (352)
T PRK12289 36 LLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVK 115 (352)
T ss_pred EEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHH
Confidence 46788877766655556666665442100 0 0000000 000 112356899999999998654 3344555433
Q ss_pred h--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhcccceEEeccCCC
Q 008807 206 A--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANV 283 (553)
Q Consensus 206 ~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NV 283 (553)
+ .+.|+++|+||+||++.. .+..|. +.+ ...+ ..++++||+++.|+++|++.|. ++.++|+|.|||
T Consensus 116 a~~~~ip~ILVlNK~DLv~~~----~~~~~~-~~~--~~~g-~~v~~iSA~tg~GI~eL~~~L~----~ki~v~iG~SgV 183 (352)
T PRK12289 116 AESTGLEIVLCLNKADLVSPT----EQQQWQ-DRL--QQWG-YQPLFISVETGIGLEALLEQLR----NKITVVAGPSGV 183 (352)
T ss_pred HHHCCCCEEEEEEchhcCChH----HHHHHH-HHH--HhcC-CeEEEEEcCCCCCHHHHhhhhc----cceEEEEeCCCC
Confidence 2 468999999999998542 123442 112 2334 4689999999999998887764 456899999999
Q ss_pred ChhHHHHHHHhhhCCCCh-hhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccCCCccccccCcCcccccccc
Q 008807 284 GKSAFINALLKKMGERDP-AAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLHHRQAAVVHAEDLPALAPQ 362 (553)
Q Consensus 284 GKSTLIN~L~~~~~~k~~-~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~~~~~~~~l~~~~l~~l~p~ 362 (553)
|||||||+|++....++. ++...++++ +||++. ++..+..+++|+|||||..+. + .++++++...||+
T Consensus 184 GKSSLIN~L~~~~~~~t~~vs~~~~rGr-------HTT~~~-~l~~l~~g~~liDTPG~~~~~--l-~~~~~~l~~~F~e 252 (352)
T PRK12289 184 GKSSLINRLIPDVELRVGKVSGKLGRGR-------HTTRHV-ELFELPNGGLLADTPGFNQPD--L-DCSPRELAHYFPE 252 (352)
T ss_pred CHHHHHHHHcCccccccccccCCCCCCC-------CcCcee-EEEECCCCcEEEeCCCccccc--c-ccCHHHHHhhHHH
Confidence 999999999986443321 111112222 288854 555456678999999998876 2 4788999999999
Q ss_pred cc-cC--Cceeeccccc-ccCcccccc
Q 008807 363 SR-LR--GQSFAVISET-ETNNEFKSH 385 (553)
Q Consensus 363 ~~-l~--~~~~~~~~~h-~e~~c~~~~ 385 (553)
++ +. ..|.|.+|.| +||+|++..
T Consensus 253 ~~~~~~~~~CrF~dC~H~~EPgCaV~~ 279 (352)
T PRK12289 253 ARQRLAQGNCQFNDCLHRDEPNCAVRG 279 (352)
T ss_pred HHHhHhhCceEccCCccCCCCChhhhh
Confidence 84 33 7899999999 999999984
No 9
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.94 E-value=3e-27 Score=236.07 Aligned_cols=190 Identities=22% Similarity=0.159 Sum_probs=138.5
Q ss_pred hhhcccEEEEEcccCCCChh--hHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEecc
Q 008807 178 LRREKALIVKLVDIVDFNGS--FLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSS 253 (553)
Q Consensus 178 ~~~~adlIl~VVD~~d~~~s--~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSA 253 (553)
....+|.++.|+|+.++..+ .+++....+ .+.|+++|+||+||.+..... .+|.. .+ ...+ ..++.+||
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~---~~~~~-~~--~~~g-~~v~~~SA 105 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDME---KEQLD-IY--RNIG-YQVLMTSS 105 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHH---HHHHH-HH--HHCC-CeEEEEec
Confidence 35688999999999876633 344433322 468899999999997543211 12221 11 2234 46899999
Q ss_pred CCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCCh-hhhhhhhcCCccCCCCCceeecEEEEeecCC
Q 008807 254 KSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDP-AAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG 332 (553)
Q Consensus 254 k~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~-~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~ 332 (553)
+++.|+++|++.+. ++.++|+|.||||||||||+|++....++. ++...++ -++||++...+. + .+
T Consensus 106 ktg~gi~eLf~~l~----~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~-------G~hTT~~~~l~~-l-~~ 172 (245)
T TIGR00157 106 KNQDGLKELIEALQ----NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGL-------GKHTTTHVELFH-F-HG 172 (245)
T ss_pred CCchhHHHHHhhhc----CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCC-------CCCcCCceEEEE-c-CC
Confidence 99999998887664 468999999999999999999987554432 1111122 345888654444 4 57
Q ss_pred cEEEEcCCccCCCccccccCcCccccccccc-ccCCceeeccccc-ccCccccccccCC
Q 008807 333 GKLYDTPGVHLHHRQAAVVHAEDLPALAPQS-RLRGQSFAVISET-ETNNEFKSHGLNG 389 (553)
Q Consensus 333 ~~liDTPGi~~~~~~~~~l~~~~l~~l~p~~-~l~~~~~~~~~~h-~e~~c~~~~~~~g 389 (553)
+.|+|||||+... +..++++++...||++ .+...|+|.+|.| +||+|++..+.+.
T Consensus 173 ~~liDtPG~~~~~--l~~~~~~~~~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~ 229 (245)
T TIGR00157 173 GLIADTPGFNEFG--LWHLEPEQLTQGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQ 229 (245)
T ss_pred cEEEeCCCccccC--CCCCCHHHHHHhCHHHHHHhCCCCCCCCccCCCCCChHHHHHHc
Confidence 8999999998775 4457888999999998 5788899999999 9999999987763
No 10
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=232.59 Aligned_cols=188 Identities=26% Similarity=0.332 Sum_probs=139.7
Q ss_pred ccEEEEEcccC--CCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCcc
Q 008807 182 KALIVKLVDIV--DFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLA 257 (553)
Q Consensus 182 adlIl~VVD~~--d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~ 257 (553)
.|-+++|+-+. +|+..++++++..+ .+...++|+||+||++.+.... +++. ..+..++ +.++.+|++++.
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~--~~~~---~~y~~~g-y~v~~~s~~~~~ 153 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV--KELL---REYEDIG-YPVLFVSAKNGD 153 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH--HHHH---HHHHhCC-eeEEEecCcCcc
Confidence 44445555544 56677788877665 3445577899999997764221 2221 1133455 789999999999
Q ss_pred ChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCCh-hhhhhhhcCCccCCCCCceeecEEEEeecCCcEEE
Q 008807 258 GIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDP-AAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLY 336 (553)
Q Consensus 258 gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~-~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~li 336 (553)
|+++|.+. +.++.++++|+||||||||||+|.+....++. ++...+++++ ||+ +.++..++.|++||
T Consensus 154 ~~~~l~~~----l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkH-------TTt-~~~l~~l~~gG~ii 221 (301)
T COG1162 154 GLEELAEL----LAGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRH-------TTT-HVELFPLPGGGWII 221 (301)
T ss_pred cHHHHHHH----hcCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCC-------ccc-eEEEEEcCCCCEEE
Confidence 98766554 56789999999999999999999987655542 3333344554 777 45666666799999
Q ss_pred EcCCccCCCccccccCcCccccccccc-ccCCceeeccccc-ccCccccccccCC
Q 008807 337 DTPGVHLHHRQAAVVHAEDLPALAPQS-RLRGQSFAVISET-ETNNEFKSHGLNG 389 (553)
Q Consensus 337 DTPGi~~~~~~~~~l~~~~l~~l~p~~-~l~~~~~~~~~~h-~e~~c~~~~~~~g 389 (553)
|||||...+ +..+++++|...||++ .+.+.|.|++|.| +||+|++..+...
T Consensus 222 DTPGf~~~~--l~~~~~e~l~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~ 274 (301)
T COG1162 222 DTPGFRSLG--LAHLEPEDLVQAFPEFAELARQCKFRDCTHTHEPGCAVKAAVEE 274 (301)
T ss_pred eCCCCCccC--cccCCHHHHHHHhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHc
Confidence 999998876 4679999999999998 4788999999999 9999999988763
No 11
>PRK12288 GTPase RsgA; Reviewed
Probab=99.93 E-value=2.5e-26 Score=239.54 Aligned_cols=191 Identities=19% Similarity=0.201 Sum_probs=137.7
Q ss_pred hcccEEEEEcccC-CCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCc
Q 008807 180 REKALIVKLVDIV-DFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSL 256 (553)
Q Consensus 180 ~~adlIl~VVD~~-d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g 256 (553)
...|.++.|.+.. +++...++++...+ .+.|.++|+||+||++... ...+.+|.. . +..++ ..++.+||+++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~-~~~~~~~~~-~--y~~~g-~~v~~vSA~tg 193 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEG-RAFVNEQLD-I--YRNIG-YRVLMVSSHTG 193 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHH-HHHHHHHHH-H--HHhCC-CeEEEEeCCCC
Confidence 4577777776653 34445566655443 3578899999999986532 122333321 1 12344 57899999999
Q ss_pred cChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCCh-hhhhhhhcCCccCCCCCceeecEEEEeecCCcEE
Q 008807 257 AGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDP-AAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKL 335 (553)
Q Consensus 257 ~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~-~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~l 335 (553)
.|+++|++.|. ++.++|+|.||||||||||+|++....++. ++...++++ +||+. .++..+..++.|
T Consensus 194 ~GideL~~~L~----~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGr-------HTT~~-~~l~~l~~~~~l 261 (347)
T PRK12288 194 EGLEELEAALT----GRISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQ-------HTTTA-ARLYHFPHGGDL 261 (347)
T ss_pred cCHHHHHHHHh----hCCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCc-------Cceee-EEEEEecCCCEE
Confidence 99999888775 357899999999999999999987555432 222222333 47774 455556668899
Q ss_pred EEcCCccCCCccccccCcCccccccccc-ccCCceeeccccc-ccCccccccccCC
Q 008807 336 YDTPGVHLHHRQAAVVHAEDLPALAPQS-RLRGQSFAVISET-ETNNEFKSHGLNG 389 (553)
Q Consensus 336 iDTPGi~~~~~~~~~l~~~~l~~l~p~~-~l~~~~~~~~~~h-~e~~c~~~~~~~g 389 (553)
+|||||+... +..+++++|...||++ .+...|.|.+|.| +||+|++..+.+.
T Consensus 262 iDTPGir~~~--l~~~~~~~l~~~F~ei~~~~~~CrF~dC~H~~EpgCaV~~Av~~ 315 (347)
T PRK12288 262 IDSPGVREFG--LWHLEPEQVTQGFVEFRDYLGTCKFRDCKHDDDPGCALREAVEE 315 (347)
T ss_pred EECCCCCccc--CCCCCHHHHHHhhHHHHHHhcCCCCCCCccCCCCCChHHHHHHc
Confidence 9999998776 3347888999999998 5889999999999 9999999987763
No 12
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.93 E-value=1.8e-25 Score=208.27 Aligned_cols=146 Identities=25% Similarity=0.296 Sum_probs=106.8
Q ss_pred HHHhhhcccEEEEEcccCCCChhhHHHHHHHh----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEE
Q 008807 175 LSHLRREKALIVKLVDIVDFNGSFLARIRDLA----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHL 250 (553)
Q Consensus 175 l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~ 250 (553)
+..+++++|+|++|+|++++..+....+.+.+ .++|+|+|+||+||++++ .+..|+.. + .+.+. ..++.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~----~~~~~~~~-~-~~~~~-~~~~~ 74 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTW----VTARWVKI-L-SKEYP-TIAFH 74 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHH----HHHHHHHH-H-hcCCc-EEEEE
Confidence 45667899999999999987433322332222 248999999999998543 23344422 1 12233 23688
Q ss_pred eccCCccChhhhHHHHHHhh------cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecE
Q 008807 251 TSSKSLAGIVGVASEIQKEK------KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPI 324 (553)
Q Consensus 251 iSAk~g~gi~~Ll~~L~~~~------~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i 324 (553)
+||+++.|+++|++.|.+.. .+.+++++|.||||||||||+|++. .+..++++||||++..
T Consensus 75 iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~-------------~~~~~~~~~g~T~~~~ 141 (157)
T cd01858 75 ASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSK-------------KVCKVAPIPGETKVWQ 141 (157)
T ss_pred eeccccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcC-------------CceeeCCCCCeeEeEE
Confidence 99999999999999998753 2457889999999999999999975 2446789999999765
Q ss_pred EEEeecCCcEEEEcCCc
Q 008807 325 QIDAFLGGGKLYDTPGV 341 (553)
Q Consensus 325 ~i~~~~~~~~liDTPGi 341 (553)
.+. ...+.+|+||||+
T Consensus 142 ~~~-~~~~~~liDtPGi 157 (157)
T cd01858 142 YIT-LMKRIYLIDCPGV 157 (157)
T ss_pred EEE-cCCCEEEEECcCC
Confidence 544 4567889999996
No 13
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.91 E-value=2.2e-24 Score=220.39 Aligned_cols=191 Identities=23% Similarity=0.237 Sum_probs=137.6
Q ss_pred hhhcccEEEEEcccCCCC--hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEecc
Q 008807 178 LRREKALIVKLVDIVDFN--GSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSS 253 (553)
Q Consensus 178 ~~~~adlIl~VVD~~d~~--~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSA 253 (553)
++.++|++++|+|+.++. ...++++...+ .+.|+++|+||+||.++.. ...|.. .....+ ..++.+||
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~----~~~~~~---~~~~~g-~~v~~vSA 146 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEE----EELELV---EALALG-YPVLAVSA 146 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHH----HHHHHH---HHHhCC-CeEEEEEC
Confidence 456899999999998764 33444433322 4689999999999976421 111211 112233 57899999
Q ss_pred CCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCc
Q 008807 254 KSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGG 333 (553)
Q Consensus 254 k~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~ 333 (553)
+++.|+++|...|. ++.++++|.+|||||||||+|++.....+.. . ....+.-++||++...+. +..++
T Consensus 147 ~~g~gi~~L~~~L~----~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~--v----~~~~~~g~~tT~~~~~~~-~~~~~ 215 (287)
T cd01854 147 KTGEGLDELREYLK----GKTSVLVGQSGVGKSTLINALLPDLDLATGE--I----SEKLGRGRHTTTHRELFP-LPGGG 215 (287)
T ss_pred CCCccHHHHHhhhc----cceEEEECCCCCCHHHHHHHHhchhhccccc--e----eccCCCCCcccceEEEEE-cCCCC
Confidence 99999988876654 5789999999999999999999874433210 0 011223456888654444 45577
Q ss_pred EEEEcCCccCCCccccccCcCccccccccc-ccCCceeeccccc-ccCccccccccCC
Q 008807 334 KLYDTPGVHLHHRQAAVVHAEDLPALAPQS-RLRGQSFAVISET-ETNNEFKSHGLNG 389 (553)
Q Consensus 334 ~liDTPGi~~~~~~~~~l~~~~l~~l~p~~-~l~~~~~~~~~~h-~e~~c~~~~~~~g 389 (553)
.|+||||+.... +..++.+++...||+. .+...|.|++|.| +||+|++..+.+.
T Consensus 216 ~liDtPG~~~~~--~~~~~~~~~~~~f~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~ 271 (287)
T cd01854 216 LLIDTPGFREFG--LLHIDPEELAHYFPEFRELAGQCKFRDCTHTNEPGCAVKAAVEA 271 (287)
T ss_pred EEEECCCCCccC--CccCCHHHHHHHhHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHc
Confidence 999999997654 3458889999999997 6889999999999 9999999987764
No 14
>PRK00098 GTPase RsgA; Reviewed
Probab=99.90 E-value=5e-24 Score=218.88 Aligned_cols=191 Identities=21% Similarity=0.230 Sum_probs=136.1
Q ss_pred hhhcccEEEEEcccCCCC--hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEecc
Q 008807 178 LRREKALIVKLVDIVDFN--GSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSS 253 (553)
Q Consensus 178 ~~~~adlIl~VVD~~d~~--~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSA 253 (553)
++.++|++++|+|+.+++ ..+++++...+ .+.|+++|+||+||.+.. ....+|.. . ....+ ..++.+||
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~---~~~~~~~~-~--~~~~g-~~v~~vSA 149 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDL---EEARELLA-L--YRAIG-YDVLELSA 149 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCH---HHHHHHHH-H--HHHCC-CeEEEEeC
Confidence 356899999999997653 44445543322 467999999999996332 22223321 1 12234 46899999
Q ss_pred CCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCCh-hhhhhhhcCCccCCCCCceeecEEEEeecCC
Q 008807 254 KSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDP-AAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG 332 (553)
Q Consensus 254 k~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~-~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~ 332 (553)
+++.|+++|++.+ .++.++++|.+|||||||||+|++.....+. ++...+++ .+||+.. ++..+..+
T Consensus 150 ~~g~gi~~L~~~l----~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G-------~htT~~~-~~~~~~~~ 217 (298)
T PRK00098 150 KEGEGLDELKPLL----AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRG-------KHTTTHV-ELYDLPGG 217 (298)
T ss_pred CCCccHHHHHhhc----cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCC-------CcccccE-EEEEcCCC
Confidence 9999998877665 5778999999999999999999986443321 11111111 2477743 44445567
Q ss_pred cEEEEcCCccCCCccccccCcCccccccccc-ccCCceeeccccc-ccCccccccccCC
Q 008807 333 GKLYDTPGVHLHHRQAAVVHAEDLPALAPQS-RLRGQSFAVISET-ETNNEFKSHGLNG 389 (553)
Q Consensus 333 ~~liDTPGi~~~~~~~~~l~~~~l~~l~p~~-~l~~~~~~~~~~h-~e~~c~~~~~~~g 389 (553)
++|+||||+...+ +..++++++...||+. .+...|.|.+|.| .||+|++..+.+.
T Consensus 218 ~~~~DtpG~~~~~--~~~~~~~~~~~~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~ 274 (298)
T PRK00098 218 GLLIDTPGFSSFG--LHDLEAEELEHYFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEE 274 (298)
T ss_pred cEEEECCCcCccC--CCCCCHHHHHHHHHHHHHHhCCCCCCCCcCCCCCCChHHHHHHc
Confidence 8999999998765 3457889999999996 6788899999999 9999999887653
No 15
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.88 E-value=1.8e-22 Score=205.30 Aligned_cols=155 Identities=24% Similarity=0.316 Sum_probs=115.9
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
....+++.+.++++|+||+|+|++++..+....+...+.++|+|+|+||+||+++. ....|.. .+.. .+ ..+
T Consensus 9 ~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~----~~~~~~~-~~~~--~~-~~v 80 (276)
T TIGR03596 9 AKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPA----VTKQWLK-YFEE--KG-IKA 80 (276)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHH----HHHHHHH-HHHH--cC-CeE
Confidence 45556677788899999999999987665555555555678999999999997542 2334432 1111 22 467
Q ss_pred EEeccCCccChhhhHHHHHHhhc--------------ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccC
Q 008807 249 HLTSSKSLAGIVGVASEIQKEKK--------------GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQS 314 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~~~--------------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S 314 (553)
+.+||+++.|+++|++.|.+..+ ..+++++|.||||||||||+|.+.. ...++
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~-------------~~~~~ 147 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKK-------------VAKVG 147 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCC-------------ccccC
Confidence 89999999999999888866432 2369999999999999999998652 33468
Q ss_pred CCCCceeecEEEEeecCCcEEEEcCCccCCC
Q 008807 315 AVPGTTLGPIQIDAFLGGGKLYDTPGVHLHH 345 (553)
Q Consensus 315 ~~PGTT~~~i~i~~~~~~~~liDTPGi~~~~ 345 (553)
+.||||++...+. +..+..|+||||+..+.
T Consensus 148 ~~~g~T~~~~~~~-~~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 148 NRPGVTKGQQWIK-LSDGLELLDTPGILWPK 177 (276)
T ss_pred CCCCeecceEEEE-eCCCEEEEECCCcccCC
Confidence 8999999865555 44577899999997664
No 16
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=3.6e-22 Score=213.84 Aligned_cols=214 Identities=15% Similarity=0.168 Sum_probs=152.6
Q ss_pred ccccceeeccccCCCCCcCCCCCCcCCCCCCcchHHHHHHHHHHHHHHHHHHH--------HHhhhcc---cccccccCC
Q 008807 30 YTKPTLIVCKSTLSPETQFESDGAGAAAPTRGDRFLELQKAKEAAKVVVRDSK--------KKRKKKD---KVLKVNSAV 98 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~g~g~~gp~~ge~~~e~~~~~~~~~~~~~~~~--------~~~r~~~---~~~~~~~~~ 98 (553)
|.+|||.++|.++++|. ||+|+||| ||+++|.+++..+.++...+++ +..|.++ ....+..+|
T Consensus 131 y~~prl~~~~~~l~~~~----gg~g~~g~--ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG 204 (426)
T PRK11058 131 HLATRLVRGWTHLERQK----GGIGLRGP--GETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVG 204 (426)
T ss_pred hhhhhhhccccchhhhc----CCCCCCCC--ChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEEC
Confidence 88999999999988875 99999999 9999998888777766444332 2222222 225789999
Q ss_pred CcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC-ccEEEecCCCCCccCCCccccHHHHHHHHHH
Q 008807 99 ASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH-GHMITAVGGNGGYAGGKQFVSADELREKLSH 177 (553)
Q Consensus 99 ~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~-~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~ 177 (553)
++++|++++|+..... .-++.+..|+|. |++++++.+.+. ...++||+| |++..++.+.++|.+++++
T Consensus 205 ~~NaGKSSLlN~Lt~~-~~~v~~~~~tTl-------d~~~~~i~l~~~~~~~l~DTaG---~~r~lp~~lve~f~~tl~~ 273 (426)
T PRK11058 205 YTNAGKSTLFNRITEA-RVYAADQLFATL-------DPTLRRIDVADVGETVLADTVG---FIRHLPHDLVAAFKATLQE 273 (426)
T ss_pred CCCCCHHHHHHHHhCC-ceeeccCCCCCc-------CCceEEEEeCCCCeEEEEecCc---ccccCCHHHHHHHHHHHHH
Confidence 9999999999987643 234555567776 889999988654 667889855 5566666667889888877
Q ss_pred hhhcccEEEEEcccCCCChhh-----HHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEe
Q 008807 178 LRREKALIVKLVDIVDFNGSF-----LARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLT 251 (553)
Q Consensus 178 ~~~~adlIl~VVD~~d~~~s~-----~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~i 251 (553)
+ .++|+||+|+|++++.... ...+..+. .+.|+++|+||+|+.+... .... . .. .+...++.+
T Consensus 274 ~-~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~--~~~~-~-----~~--~~~~~~v~I 342 (426)
T PRK11058 274 T-RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE--PRID-R-----DE--ENKPIRVWL 342 (426)
T ss_pred h-hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh--HHHH-H-----Hh--cCCCceEEE
Confidence 4 5899999999999875211 11122221 2589999999999975321 1111 0 01 121235789
Q ss_pred ccCCccChhhhHHHHHHhhc
Q 008807 252 SSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 252 SAk~g~gi~~Ll~~L~~~~~ 271 (553)
||++|.|+++|++.|.+.+.
T Consensus 343 SAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 343 SAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred eCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999987653
No 17
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.87 E-value=5.2e-22 Score=203.03 Aligned_cols=154 Identities=23% Similarity=0.297 Sum_probs=114.8
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEE
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVH 249 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi 249 (553)
...+++.+.++++|+||+|+|++++..+....+.....++|+++|+||+||.+.. ....|.. .+.. .+ ..++
T Consensus 13 k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~----~~~~~~~-~~~~--~~-~~vi 84 (287)
T PRK09563 13 KARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPE----VTKKWIE-YFEE--QG-IKAL 84 (287)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHH----HHHHHHH-HHHH--cC-CeEE
Confidence 4445677778899999999999987666555565555688999999999997542 2334431 1111 12 4578
Q ss_pred EeccCCccChhhhHHHHHHhhc--------------ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCC
Q 008807 250 LTSSKSLAGIVGVASEIQKEKK--------------GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSA 315 (553)
Q Consensus 250 ~iSAk~g~gi~~Ll~~L~~~~~--------------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~ 315 (553)
.+||+++.|+++|++.+.+.++ ..+++++|.||||||||||+|.+.. ...+++
T Consensus 85 ~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~-------------~~~~~~ 151 (287)
T PRK09563 85 AINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKK-------------IAKTGN 151 (287)
T ss_pred EEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCC-------------ccccCC
Confidence 9999999999999887765421 2369999999999999999999752 335788
Q ss_pred CCCceeecEEEEeecCCcEEEEcCCccCCC
Q 008807 316 VPGTTLGPIQIDAFLGGGKLYDTPGVHLHH 345 (553)
Q Consensus 316 ~PGTT~~~i~i~~~~~~~~liDTPGi~~~~ 345 (553)
.||+|++...+. ...+.+|+||||+..+.
T Consensus 152 ~~g~T~~~~~~~-~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 152 RPGVTKAQQWIK-LGKGLELLDTPGILWPK 180 (287)
T ss_pred CCCeEEEEEEEE-eCCcEEEEECCCcCCCC
Confidence 999999865444 45568899999997664
No 18
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.87 E-value=9e-22 Score=183.06 Aligned_cols=138 Identities=33% Similarity=0.445 Sum_probs=101.4
Q ss_pred cEEEEEcccCCCChhhHHHHH-HH--hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccCh
Q 008807 183 ALIVKLVDIVDFNGSFLARIR-DL--AGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGI 259 (553)
Q Consensus 183 dlIl~VVD~~d~~~s~~~~l~-~~--~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi 259 (553)
|+||+|+|++++..+....+. .. ..++|+|+|+||+||++++ .+.+|+.. + .... ...++.+||+++.|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~----~~~~~~~~-~-~~~~-~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKE----VLRKWLAY-L-RHSY-PTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHH----HHHHHHHH-H-HhhC-CceEEEEeccCCcCh
Confidence 789999999987655444443 12 2468999999999997542 23345321 1 1112 356899999999999
Q ss_pred hhhHHHHHHh--------------hcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEE
Q 008807 260 VGVASEIQKE--------------KKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQ 325 (553)
Q Consensus 260 ~~Ll~~L~~~--------------~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~ 325 (553)
++|.+.+.+. ..+.+++++|.||||||||||+|++... ..+++.||||++...
T Consensus 74 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~-------------~~~~~~~~~t~~~~~ 140 (155)
T cd01849 74 EKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK-------------LKVGNVPGTTTSQQE 140 (155)
T ss_pred hhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc-------------ccccCCCCcccceEE
Confidence 9999887542 2356899999999999999999997532 236788999998766
Q ss_pred EEeecCCcEEEEcCCc
Q 008807 326 IDAFLGGGKLYDTPGV 341 (553)
Q Consensus 326 i~~~~~~~~liDTPGi 341 (553)
+. +..+..|+||||+
T Consensus 141 ~~-~~~~~~liDtPG~ 155 (155)
T cd01849 141 VK-LDNKIKLLDTPGI 155 (155)
T ss_pred EE-ecCCEEEEECCCC
Confidence 55 4567789999996
No 19
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1e-20 Score=204.12 Aligned_cols=218 Identities=22% Similarity=0.190 Sum_probs=154.1
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELRE 173 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~ 173 (553)
+..+|..+.|++++++........++.+.. ..+++.....+.+.+....++||+|.... .....+.+.+
T Consensus 2 i~ivG~~nvGKStL~n~l~~~~~~~v~~~~-------g~t~d~~~~~~~~~~~~~~liDTpG~~~~----~~~~~~~~~~ 70 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIVSDTP-------GVTRDRKYGDAEWGGREFILIDTGGIEED----DDGLDKQIRE 70 (429)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcceecCCC-------CcccCceEEEEEECCeEEEEEECCCCCCc----chhHHHHHHH
Confidence 567889999999999877654322332211 12347777777777777899999986421 1224567777
Q ss_pred HHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEe
Q 008807 174 KLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLT 251 (553)
Q Consensus 174 ~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~i 251 (553)
+...+++++|+|++|+|+.+........+...+ .++|+++|+||+|+...+.. ..++ ..+++..++.+
T Consensus 71 ~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~---~~~~-------~~lg~~~~~~v 140 (429)
T TIGR03594 71 QAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV---AAEF-------YSLGFGEPIPI 140 (429)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc---HHHH-------HhcCCCCeEEE
Confidence 777888899999999999874333222222222 36899999999999754421 1111 23455578999
Q ss_pred ccCCccChhhhHHHHHHhhcc-----------cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCce
Q 008807 252 SSKSLAGIVGVASEIQKEKKG-----------RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTT 320 (553)
Q Consensus 252 SAk~g~gi~~Ll~~L~~~~~g-----------~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT 320 (553)
||++|.|+++|++.+.+.+.. .+++++|.+|||||||+|+|++. .+..+++.||||
T Consensus 141 Sa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~-------------~~~~~~~~~gtt 207 (429)
T TIGR03594 141 SAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGE-------------ERVIVSDIAGTT 207 (429)
T ss_pred eCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCC-------------CeeecCCCCCce
Confidence 999999999999988765421 36999999999999999999975 234567899999
Q ss_pred eecEEEEeecCC--cEEEEcCCccCCC
Q 008807 321 LGPIQIDAFLGG--GKLYDTPGVHLHH 345 (553)
Q Consensus 321 ~~~i~i~~~~~~--~~liDTPGi~~~~ 345 (553)
++.+......++ ..++||||+....
T Consensus 208 ~~~~~~~~~~~~~~~~liDT~G~~~~~ 234 (429)
T TIGR03594 208 RDSIDIPFERNGKKYLLIDTAGIRRKG 234 (429)
T ss_pred ECcEeEEEEECCcEEEEEECCCccccc
Confidence 987665543233 4699999986554
No 20
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.86 E-value=5.5e-21 Score=180.70 Aligned_cols=152 Identities=26% Similarity=0.286 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
+...+++.+.++++|+|++|+|++++.......+.....++|+++|+||+||+++. ....|. +.+. . . ...+
T Consensus 7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~----~~~~~~-~~~~-~-~-~~~v 78 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPK----KTKKWL-KYFE-S-K-GEKV 78 (171)
T ss_pred HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChH----HHHHHH-HHHH-h-c-CCeE
Confidence 44455567778899999999999876544333344444568999999999997442 122332 1111 1 1 2468
Q ss_pred EEeccCCccChhhhHHHHHHhhc-------------ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCC
Q 008807 249 HLTSSKSLAGIVGVASEIQKEKK-------------GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSA 315 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~~~-------------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~ 315 (553)
+.+||+++.|+++|++.+.+.++ +..++++|.+|||||||+|+|.+.. ...+++
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~-------------~~~~~~ 145 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKK-------------VAKVGN 145 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCC-------------ceeecC
Confidence 89999999999999998877531 2479999999999999999999752 224678
Q ss_pred CCCceeecEEEEeecCCcEEEEcCCcc
Q 008807 316 VPGTTLGPIQIDAFLGGGKLYDTPGVH 342 (553)
Q Consensus 316 ~PGTT~~~i~i~~~~~~~~liDTPGi~ 342 (553)
.||||++...+. +..+..|+||||+.
T Consensus 146 ~~~~T~~~~~~~-~~~~~~~iDtpG~~ 171 (171)
T cd01856 146 KPGVTKGIQWIK-ISPGIYLLDTPGIL 171 (171)
T ss_pred CCCEEeeeEEEE-ecCCEEEEECCCCC
Confidence 899999765554 34567899999984
No 21
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=1.5e-20 Score=203.21 Aligned_cols=219 Identities=24% Similarity=0.219 Sum_probs=152.1
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
.+..+|..++|++++++..-......+.+.. ..+++.....+.+.+....++||+|... . .....+.+.
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~-------~~t~d~~~~~~~~~~~~~~liDT~G~~~---~-~~~~~~~~~ 71 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTP-------GVTRDRIYGEAEWLGREFILIDTGGIEP---D-DDGFEKQIR 71 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCC-------CCcccceEEEEEECCcEEEEEECCCCCC---c-chhHHHHHH
Confidence 5678899999999999977654332332211 1234777778887777889999988642 1 111345566
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEE
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHL 250 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~ 250 (553)
++...++.++|+||+|+|+.+........+..++ .++|+++|+||+|+.... ....++ ..+++..++.
T Consensus 72 ~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~---~~~~~~-------~~lg~~~~~~ 141 (435)
T PRK00093 72 EQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE---ADAYEF-------YSLGLGEPYP 141 (435)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch---hhHHHH-------HhcCCCCCEE
Confidence 6677778899999999999874332222222221 368999999999975422 111222 1234445789
Q ss_pred eccCCccChhhhHHHHHHhh----------cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCce
Q 008807 251 TSSKSLAGIVGVASEIQKEK----------KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTT 320 (553)
Q Consensus 251 iSAk~g~gi~~Ll~~L~~~~----------~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT 320 (553)
+||++|.|+++|++.+.+.. ...+++++|.+|||||||+|+|++. .+..+++.||||
T Consensus 142 iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~-------------~~~~~~~~~gtt 208 (435)
T PRK00093 142 ISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGE-------------ERVIVSDIAGTT 208 (435)
T ss_pred EEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCC-------------CceeecCCCCce
Confidence 99999999999999887621 2358999999999999999999975 244578899999
Q ss_pred eecEEEEeecCC--cEEEEcCCccCCC
Q 008807 321 LGPIQIDAFLGG--GKLYDTPGVHLHH 345 (553)
Q Consensus 321 ~~~i~i~~~~~~--~~liDTPGi~~~~ 345 (553)
++.+.......+ ..++||||+....
T Consensus 209 ~~~~~~~~~~~~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 209 RDSIDTPFERDGQKYTLIDTAGIRRKG 235 (435)
T ss_pred EEEEEEEEEECCeeEEEEECCCCCCCc
Confidence 997765543333 4699999986543
No 22
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=4e-21 Score=201.33 Aligned_cols=209 Identities=19% Similarity=0.251 Sum_probs=150.2
Q ss_pred ccccceeeccccCCCCCcCCCCCCcCCCCCCcchHHHHHHHHHHHHHHHHH--------HHHHhhhcc---cccccccCC
Q 008807 30 YTKPTLIVCKSTLSPETQFESDGAGAAAPTRGDRFLELQKAKEAAKVVVRD--------SKKKRKKKD---KVLKVNSAV 98 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~g~g~~gp~~ge~~~e~~~~~~~~~~~~~~--------~~~~~r~~~---~~~~~~~~~ 98 (553)
|.+||+++.|.++++ ++||||++|| ||+..|.+++..+.++...+ +++..|..| ...++..+|
T Consensus 123 ~~l~r~~~~~~~l~~----~~~~i~~~g~--gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG 196 (351)
T TIGR03156 123 YLLPRLVGGWTHLSR----QGGGIGTRGP--GETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVG 196 (351)
T ss_pred chhhhhhhhHHHHHh----hcCCCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEEC
Confidence 789999999988754 4599999999 99877877665555554333 222223222 446899999
Q ss_pred CcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEe-cCCccEEEecCCCCCccCCCccccHHHHHHHHHH
Q 008807 99 ASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRL-LSHGHMITAVGGNGGYAGGKQFVSADELREKLSH 177 (553)
Q Consensus 99 ~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~-l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~ 177 (553)
++++|++++|+...... -++.+..|+|+ |++++++.. .+....++||+ ||+++.++...+.|++++++
T Consensus 197 ~~NvGKSSLln~L~~~~-~~v~~~~~tT~-------d~~~~~i~~~~~~~i~l~DT~---G~~~~l~~~lie~f~~tle~ 265 (351)
T TIGR03156 197 YTNAGKSTLFNALTGAD-VYAADQLFATL-------DPTTRRLDLPDGGEVLLTDTV---GFIRDLPHELVAAFRATLEE 265 (351)
T ss_pred CCCCCHHHHHHHHhCCc-eeeccCCcccc-------CCEEEEEEeCCCceEEEEecC---cccccCCHHHHHHHHHHHHH
Confidence 99999999999887643 45556667777 899999988 45677889995 56666676677889988876
Q ss_pred hhhcccEEEEEcccCCCChhh-H----HHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEe
Q 008807 178 LRREKALIVKLVDIVDFNGSF-L----ARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLT 251 (553)
Q Consensus 178 ~~~~adlIl~VVD~~d~~~s~-~----~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~i 251 (553)
+.++|+|++|+|++++.... . ..+..+. .++|+++|+||+|+.+... +..+ . .. ...++.+
T Consensus 266 -~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----v~~~-----~-~~--~~~~i~i 332 (351)
T TIGR03156 266 -VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----IERL-----E-EG--YPEAVFV 332 (351)
T ss_pred -HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh----HHHH-----H-hC--CCCEEEE
Confidence 55999999999999875321 1 2222221 2689999999999975321 1111 0 11 1357899
Q ss_pred ccCCccChhhhHHHHHH
Q 008807 252 SSKSLAGIVGVASEIQK 268 (553)
Q Consensus 252 SAk~g~gi~~Ll~~L~~ 268 (553)
||+++.|+++|++.|.+
T Consensus 333 SAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 333 SAKTGEGLDLLLEAIAE 349 (351)
T ss_pred EccCCCCHHHHHHHHHh
Confidence 99999999999988864
No 23
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.85 E-value=2.4e-22 Score=186.35 Aligned_cols=133 Identities=26% Similarity=0.326 Sum_probs=94.7
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCC-hhhhhhhhcCCccCCCCCc
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERD-PAAAMAQKYRPIQSAVPGT 319 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~-~~~~~~~~~~~~~S~~PGT 319 (553)
+.++ ++++.+|++++.|+++|.+.+ +++.++|+|.+|||||||||+|++....++ .++...++++ +|
T Consensus 9 ~~~g-y~v~~~S~~~~~g~~~l~~~l----~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGk-------HT 76 (161)
T PF03193_consen 9 EKLG-YPVFFISAKTGEGIEELKELL----KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGK-------HT 76 (161)
T ss_dssp HHTT-SEEEE-BTTTTTTHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHTSS----S-------------------
T ss_pred HHcC-CcEEEEeCCCCcCHHHHHHHh----cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCc-------cc
Confidence 4455 679999999999998776554 567999999999999999999999755543 2333333444 36
Q ss_pred eeecEEEEeecCCcEEEEcCCccCCCccccccCcCccccccccc-ccCCceeeccccc-ccCccccccccC
Q 008807 320 TLGPIQIDAFLGGGKLYDTPGVHLHHRQAAVVHAEDLPALAPQS-RLRGQSFAVISET-ETNNEFKSHGLN 388 (553)
Q Consensus 320 T~~~i~i~~~~~~~~liDTPGi~~~~~~~~~l~~~~l~~l~p~~-~l~~~~~~~~~~h-~e~~c~~~~~~~ 388 (553)
|+ ..++..++.++.|||||||.... +..+++++|...||++ .+...|.|++|.| +||+|+|..+..
T Consensus 77 Tt-~~~l~~l~~g~~iIDTPGf~~~~--l~~~~~~~l~~~F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av~ 144 (161)
T PF03193_consen 77 TT-HRELFPLPDGGYIIDTPGFRSFG--LWHIDPEELAQYFPEFRPLAGQCKFRDCTHIHEPGCAVKAAVE 144 (161)
T ss_dssp ---SEEEEEETTSEEEECSHHHHT----GCCS-HHHHHHCSGGGHHHTTHSSSTTTTSSSSTT-HHHHHHH
T ss_pred CC-CeeEEecCCCcEEEECCCCCccc--cccCCHHHHHHHHHHhccccCCCCccCCCCCCCCCChHHHHHH
Confidence 76 45666677899999999998876 4458999999999998 5899999999999 999999988765
No 24
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=1.6e-20 Score=204.87 Aligned_cols=220 Identities=19% Similarity=0.175 Sum_probs=148.3
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
...+.++|..+.|++++++..-....--+.+. ...+++.....+...++...++||+|... . .....+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~-------~gvT~d~~~~~~~~~~~~~~l~DT~G~~~---~-~~~~~~~ 106 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDV-------PGVTRDRVSYDAEWNGRRFTVVDTGGWEP---D-AKGLQAS 106 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCC-------CCCCEeeEEEEEEECCcEEEEEeCCCcCC---c-chhHHHH
Confidence 45799999999999999987764321001110 11223556666666667788999987531 1 1123456
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
+..+...++.++|+||+|+|+++........+...+ .++|+++|+||+|+..... . ..+. . .+++..+
T Consensus 107 ~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~-~~~~-----~--~~g~~~~ 176 (472)
T PRK03003 107 VAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--D-AAAL-----W--SLGLGEP 176 (472)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--h-hHHH-----H--hcCCCCe
Confidence 777777778899999999999875322222222221 4689999999999864321 1 1111 1 1233346
Q ss_pred EEeccCCccChhhhHHHHHHhhc-----------ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCC
Q 008807 249 HLTSSKSLAGIVGVASEIQKEKK-----------GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVP 317 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~~~-----------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~P 317 (553)
+.+||++|.|+++|++.|.+.+. ..+++++|.||||||||+|+|++. .+..+++.|
T Consensus 177 ~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~-------------~~~~~s~~~ 243 (472)
T PRK03003 177 HPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGE-------------ERSVVDDVA 243 (472)
T ss_pred EEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCC-------------CcccccCCC
Confidence 79999999999999988865432 247999999999999999999975 233477899
Q ss_pred CceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 318 GTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 318 GTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
|||++.+......++ ..|+||||+...
T Consensus 244 gtT~d~~~~~~~~~~~~~~l~DTaG~~~~ 272 (472)
T PRK03003 244 GTTVDPVDSLIELGGKTWRFVDTAGLRRR 272 (472)
T ss_pred CccCCcceEEEEECCEEEEEEECCCcccc
Confidence 999987654432233 359999998543
No 25
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.85 E-value=6e-21 Score=174.74 Aligned_cols=134 Identities=26% Similarity=0.274 Sum_probs=95.6
Q ss_pred HHHHhhhcccEEEEEcccCCCChhhHHHHHHHh----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEE
Q 008807 174 KLSHLRREKALIVKLVDIVDFNGSFLARIRDLA----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVH 249 (553)
Q Consensus 174 ~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi 249 (553)
.+.++++++|+|++|+|++++..+....+...+ .++|+++|+||+||+++. .+.+|.. .+. ..+ ..++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~----~~~~~~~-~~~--~~~-~~ii 75 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEE----QRKAWAE-YFK--KEG-IVVV 75 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHH----HHHHHHH-HHH--hcC-CeEE
Confidence 355567899999999999887644333333322 368999999999997543 1223321 111 122 4688
Q ss_pred EeccCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee
Q 008807 250 LTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF 329 (553)
Q Consensus 250 ~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~ 329 (553)
++||+++.+ +++++|.||||||||||+|++.. ...++..||+|++...+. +
T Consensus 76 ~iSa~~~~~---------------~~~~~G~~~vGKstlin~l~~~~-------------~~~~~~~~~~~~~~~~~~-~ 126 (141)
T cd01857 76 FFSALKENA---------------TIGLVGYPNVGKSSLINALVGKK-------------KVSVSATPGKTKHFQTIF-L 126 (141)
T ss_pred EEEecCCCc---------------EEEEECCCCCCHHHHHHHHhCCC-------------ceeeCCCCCcccceEEEE-e
Confidence 999998765 69999999999999999999752 224677899999755444 4
Q ss_pred cCCcEEEEcCCccCC
Q 008807 330 LGGGKLYDTPGVHLH 344 (553)
Q Consensus 330 ~~~~~liDTPGi~~~ 344 (553)
..+.+|+|||||..|
T Consensus 127 ~~~~~i~DtpG~~~p 141 (141)
T cd01857 127 TPTITLCDCPGLVFP 141 (141)
T ss_pred CCCEEEEECCCcCCC
Confidence 567799999999754
No 26
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.84 E-value=7e-21 Score=180.11 Aligned_cols=141 Identities=26% Similarity=0.385 Sum_probs=95.7
Q ss_pred cEEEEEcccCCCChhhHHHHHHHh----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc-cC-------------
Q 008807 183 ALIVKLVDIVDFNGSFLARIRDLA----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK-LN------------- 244 (553)
Q Consensus 183 dlIl~VVD~~d~~~s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~-l~------------- 244 (553)
|+|++|+|++++..+..+.+.+.+ .++|+|+|+||+||++++. +.+|......... +.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKEN----VEKWLKYLRREFPTVAFKASTQSQKKNLG 76 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHH----HHHHHHHHHhhCCEEEEEecccccccchh
Confidence 799999999987665555554441 4689999999999986542 3444322111100 00
Q ss_pred -------ceeEEEeccCCccChhhhHHHHHHhhc------ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCC
Q 008807 245 -------VLSVHLTSSKSLAGIVGVASEIQKEKK------GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRP 311 (553)
Q Consensus 245 -------~~~vi~iSAk~g~gi~~Ll~~L~~~~~------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~ 311 (553)
.....++|++++.|.+.|++.+++... ..+++++|.||||||||||+|.+.. ..
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~-------------~~ 143 (172)
T cd04178 77 QKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSR-------------AC 143 (172)
T ss_pred hcccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcc-------------cc
Confidence 001133455666677777766655322 2489999999999999999999752 33
Q ss_pred ccCCCCCceeecEEEEeecCCcEEEEcCCc
Q 008807 312 IQSAVPGTTLGPIQIDAFLGGGKLYDTPGV 341 (553)
Q Consensus 312 ~~S~~PGTT~~~i~i~~~~~~~~liDTPGi 341 (553)
.+++.||||++...+. ...+..|+||||+
T Consensus 144 ~~~~~pg~T~~~~~~~-~~~~~~l~DtPGi 172 (172)
T cd04178 144 NVGATPGVTKSMQEVH-LDKKVKLLDSPGI 172 (172)
T ss_pred eecCCCCeEcceEEEE-eCCCEEEEECcCC
Confidence 5788999999765555 4557789999996
No 27
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=7.7e-20 Score=208.53 Aligned_cols=218 Identities=19% Similarity=0.151 Sum_probs=148.0
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
.+.++|..+.|+++++.........-+.+.. +.+++.+...+.+.+..+.++||+|... .. ......+.
T Consensus 277 ~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~p-------GvT~d~~~~~~~~~~~~~~liDT~G~~~---~~-~~~~~~~~ 345 (712)
T PRK09518 277 VVAIVGRPNVGKSTLVNRILGRREAVVEDTP-------GVTRDRVSYDAEWAGTDFKLVDTGGWEA---DV-EGIDSAIA 345 (712)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeecCCC-------CeeEEEEEEEEEECCEEEEEEeCCCcCC---CC-ccHHHHHH
Confidence 6888899999999999876543222222111 1123666666666667788999988531 11 12456788
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEE
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHL 250 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~ 250 (553)
++...++.++|+||+|+|+.+........+...+ .++|+|+|+||+|+..... ...++ ..++...++.
T Consensus 346 ~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~---~~~~~-------~~lg~~~~~~ 415 (712)
T PRK09518 346 SQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY---DAAEF-------WKLGLGEPYP 415 (712)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh---hHHHH-------HHcCCCCeEE
Confidence 8888888899999999999864322222222221 4789999999999864321 11111 1123345689
Q ss_pred eccCCccChhhhHHHHHHhhc-------------ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCC
Q 008807 251 TSSKSLAGIVGVASEIQKEKK-------------GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVP 317 (553)
Q Consensus 251 iSAk~g~gi~~Ll~~L~~~~~-------------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~P 317 (553)
+||++|.|+++|++.|.+.+. ..+++++|.+|||||||+|+|++. .+..++..|
T Consensus 416 iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~-------------~~~~v~~~~ 482 (712)
T PRK09518 416 ISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE-------------ERAVVNDLA 482 (712)
T ss_pred EECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc-------------cccccCCCC
Confidence 999999999999988865431 147999999999999999999975 233567899
Q ss_pred CceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 318 GTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 318 GTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
|||++.+......++ ..++||||+...
T Consensus 483 gtT~d~~~~~~~~~~~~~~liDTaG~~~~ 511 (712)
T PRK09518 483 GTTRDPVDEIVEIDGEDWLFIDTAGIKRR 511 (712)
T ss_pred CCCcCcceeEEEECCCEEEEEECCCcccC
Confidence 999997654332223 459999998643
No 28
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.83 E-value=7.4e-20 Score=170.05 Aligned_cols=148 Identities=27% Similarity=0.381 Sum_probs=104.7
Q ss_pred HHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEE
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVH 249 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi 249 (553)
++.++++.+++|+|++|+|++++.......+...+ .++|+++|+||+|+.+.. ....|. . + ....+ ..++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~----~~~~~~-~-~-~~~~~-~~~~ 74 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKE----VLEKWK-S-I-KESEG-IPVV 74 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH----HHHHHH-H-H-HHhCC-CcEE
Confidence 45567777789999999999886533323332222 368999999999997432 122221 1 1 11122 4589
Q ss_pred EeccCCccChhhhHHHHHHhhc----ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEE
Q 008807 250 LTSSKSLAGIVGVASEIQKEKK----GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQ 325 (553)
Q Consensus 250 ~iSAk~g~gi~~Ll~~L~~~~~----g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~ 325 (553)
.+||+++.|+++|++.|.+..+ ...++++|.+|||||||+|+|.+.. ...+++.+|+|++ .+
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~-------------~~~~~~~~~~t~~-~~ 140 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRH-------------SASTSPSPGYTKG-EQ 140 (156)
T ss_pred EEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCC-------------ccccCCCCCeeee-eE
Confidence 9999999999999999987643 3578999999999999999998541 2236778999985 34
Q ss_pred EEeecCCcEEEEcCCc
Q 008807 326 IDAFLGGGKLYDTPGV 341 (553)
Q Consensus 326 i~~~~~~~~liDTPGi 341 (553)
+.....+..|+||||+
T Consensus 141 ~~~~~~~~~~~DtpGi 156 (156)
T cd01859 141 LVKITSKIYLLDTPGV 156 (156)
T ss_pred EEEcCCCEEEEECcCC
Confidence 4334456789999996
No 29
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.80 E-value=2e-19 Score=183.69 Aligned_cols=156 Identities=24% Similarity=0.387 Sum_probs=115.1
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
...++.+.+...++.+|+||.|+|++||.++....+.+.+ +++..|+|+||+||+|.+. +.+|+. .+. ..
T Consensus 132 s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv----~e~Wl~-YLr-~~ 205 (435)
T KOG2484|consen 132 SKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREV----VEKWLV-YLR-RE 205 (435)
T ss_pred hHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHH----HHHHHH-HHH-hh
Confidence 3567777788888899999999999999988887777765 5688999999999999863 345542 111 11
Q ss_pred cCceeEEEeccCCc-------------cChhhhHHHHHHhhc------ccceEEeccCCCChhHHHHHHHhhhCCCChhh
Q 008807 243 LNVLSVHLTSSKSL-------------AGIVGVASEIQKEKK------GRDVYILGSANVGKSAFINALLKKMGERDPAA 303 (553)
Q Consensus 243 l~~~~vi~iSAk~g-------------~gi~~Ll~~L~~~~~------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~ 303 (553)
+ ..|.+.++... .|.+.|+..+..+.. ...+.|||.|||||||+||+|.....|.
T Consensus 206 ~--ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~---- 279 (435)
T KOG2484|consen 206 G--PTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACN---- 279 (435)
T ss_pred C--CcceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhcccc----
Confidence 1 33444433322 355556666554432 3478999999999999999999875553
Q ss_pred hhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccCC
Q 008807 304 AMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLH 344 (553)
Q Consensus 304 ~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~~ 344 (553)
+++.||.|+...++. ++.+..|+|.||+...
T Consensus 280 ---------vg~~pGvT~smqeV~-Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 280 ---------VGNVPGVTRSMQEVK-LDKKIRLLDSPGIVPP 310 (435)
T ss_pred ---------CCCCccchhhhhhee-ccCCceeccCCceeec
Confidence 678899999776776 5778999999999754
No 30
>PRK01889 GTPase RsgA; Reviewed
Probab=99.79 E-value=2.6e-19 Score=188.09 Aligned_cols=189 Identities=22% Similarity=0.212 Sum_probs=131.3
Q ss_pred hhcccEEEEEcccC-CCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCC
Q 008807 179 RREKALIVKLVDIV-DFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKS 255 (553)
Q Consensus 179 ~~~adlIl~VVD~~-d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~ 255 (553)
..+.|.|+.|+++. +++..+++++...+ .+.+.++|+||+||++.. ....+++.. ...+ +.++.+||++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~---~~~~~~~~~----~~~g-~~Vi~vSa~~ 181 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDA---EEKIAEVEA----LAPG-VPVLAVSALD 181 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCH---HHHHHHHHH----hCCC-CcEEEEECCC
Confidence 45788888888884 56666788876654 456778899999998642 112233221 1223 6789999999
Q ss_pred ccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEE
Q 008807 256 LAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKL 335 (553)
Q Consensus 256 g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~l 335 (553)
+.|+++|.+.|. ++..++|+|.+|||||||+|+|++....... ..... .....+||+. .++..+..+..|
T Consensus 182 g~gl~~L~~~L~---~g~~~~lvG~sgvGKStLin~L~g~~~~~~G--~i~~~----~~~g~~tt~~-~~l~~l~~~~~l 251 (356)
T PRK01889 182 GEGLDVLAAWLS---GGKTVALLGSSGVGKSTLVNALLGEEVQKTG--AVRED----DSKGRHTTTH-RELHPLPSGGLL 251 (356)
T ss_pred CccHHHHHHHhh---cCCEEEEECCCCccHHHHHHHHHHhccccee--eEEEC----CCCCcchhhh-ccEEEecCCCee
Confidence 999998877764 4678999999999999999999986433211 00000 0011235553 355555667899
Q ss_pred EEcCCccCCCccccccCcCccccccccc-ccCCceeeccccc-ccCccccccccC
Q 008807 336 YDTPGVHLHHRQAAVVHAEDLPALAPQS-RLRGQSFAVISET-ETNNEFKSHGLN 388 (553)
Q Consensus 336 iDTPGi~~~~~~~~~l~~~~l~~l~p~~-~l~~~~~~~~~~h-~e~~c~~~~~~~ 388 (553)
+||||+.... +.+ ..+.+...|++. .+...|.+.+|.| .||+|++.....
T Consensus 252 ~DtpG~~~~~-l~~--~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~ 303 (356)
T PRK01889 252 IDTPGMRELQ-LWD--AEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIE 303 (356)
T ss_pred cCCCchhhhc-ccC--chhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHH
Confidence 9999997664 111 124577888887 5788899999999 999999987765
No 31
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.76 E-value=1.2e-18 Score=182.85 Aligned_cols=158 Identities=23% Similarity=0.244 Sum_probs=110.5
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
...-++.++|+.+++.+|+||.+||+++|-..+.+.|.+++ ..+..+|++||+||++++. ...+.+|+ ...
T Consensus 159 ErNLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~q-r~aWa~YF----~~~ 233 (562)
T KOG1424|consen 159 ERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQ-RVAWAEYF----RQN 233 (562)
T ss_pred hhCHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHH-HHHHHHHH----Hhc
Confidence 33457889999999999999999999998766666666554 3467899999999998763 22233333 122
Q ss_pred ccCceeEEEeccCCc----------------cCh------------hhhHHHH----------HHh--------------
Q 008807 242 KLNVLSVHLTSSKSL----------------AGI------------VGVASEI----------QKE-------------- 269 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g----------------~gi------------~~Ll~~L----------~~~-------------- 269 (553)
. ..+++.||... .++ +.++... .+.
T Consensus 234 n---i~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~ 310 (562)
T KOG1424|consen 234 N---IPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGER 310 (562)
T ss_pred C---ceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcC
Confidence 2 45667777640 011 1011110 000
Q ss_pred -hcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccCCC
Q 008807 270 -KKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLHH 345 (553)
Q Consensus 270 -~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~~~ 345 (553)
..-.+|.+||.|||||||+||+|.+. ++..||..||-|+.+..| .+..+..|.|+||+..|+
T Consensus 311 ~~~~vtVG~VGYPNVGKSSTINaLvG~-------------KkVsVS~TPGkTKHFQTi-~ls~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 311 YKDVVTVGFVGYPNVGKSSTINALVGR-------------KKVSVSSTPGKTKHFQTI-FLSPSVCLCDCPGLVFPS 373 (562)
T ss_pred CCceeEEEeecCCCCchhHHHHHHhcC-------------ceeeeecCCCCcceeEEE-EcCCCceecCCCCccccC
Confidence 01157899999999999999999986 466799999999955444 467889999999998774
No 32
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.75 E-value=8.4e-19 Score=174.59 Aligned_cols=205 Identities=15% Similarity=0.151 Sum_probs=149.8
Q ss_pred ccccceeeccccCCCCCcCCCCCCcCCCCCCcchHHHHHH-HHHHHHHHHHHHH-----HHh-----hhcccccccccCC
Q 008807 30 YTKPTLIVCKSTLSPETQFESDGAGAAAPTRGDRFLELQK-AKEAAKVVVRDSK-----KKR-----KKKDKVLKVNSAV 98 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~g~g~~gp~~ge~~~e~~~-~~~~~~~~~~~~~-----~~~-----r~~~~~~~~~~~~ 98 (553)
|.+|||.++|+|+-+|. ||+ -.|- ||.+.+++. ++-+++...+++. ++| |.......++.+|
T Consensus 113 y~~~rl~r~~~hl~r~~----g~~-v~gs--ges~id~d~~rllr~kea~lrKeL~~vrrkr~~r~gr~~~s~pviavVG 185 (410)
T KOG0410|consen 113 YVGGRLERELQHLRRQS----GGQ-VKGS--GESIIDRDIRRLLRIKEAQLRKELQRVRRKRQRRVGREGESSPVIAVVG 185 (410)
T ss_pred cccchHHHHHHHHHhcC----CCc-ccCc--cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCceEEEEe
Confidence 77999999999999987 888 8899 999998776 5555555433322 111 1111122788999
Q ss_pred CcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC-ccEEEecCCCCCccCCCccccHHHHHHHHHH
Q 008807 99 ASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH-GHMITAVGGNGGYAGGKQFVSADELREKLSH 177 (553)
Q Consensus 99 ~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~-~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~ 177 (553)
|||+|+++++.... +..-|-++..|+|+ |++.++.++... ...++|| +||+.++|..+.++|+++|++
T Consensus 186 YTNaGKsTLikaLT-~Aal~p~drLFATL-------DpT~h~a~Lpsg~~vlltDT---vGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 186 YTNAGKSTLIKALT-KAALYPNDRLFATL-------DPTLHSAHLPSGNFVLLTDT---VGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred ecCccHHHHHHHHH-hhhcCccchhheec-------cchhhhccCCCCcEEEEeec---hhhhhhCcHHHHHHHHHHHHH
Confidence 99999999998887 46778899999999 999999988643 2345555 999999999999999999999
Q ss_pred hhhcccEEEEEcccCCCChh-----hHHHHHHH-hCCCC----EEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCcee
Q 008807 178 LRREKALIVKLVDIVDFNGS-----FLARIRDL-AGANP----IILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLS 247 (553)
Q Consensus 178 ~~~~adlIl~VVD~~d~~~s-----~~~~l~~~-~~~~p----vIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (553)
+. ++|+|+||+|+++|+.. .+.-+..+ +...| .|=|=||+|..+..... +. ..
T Consensus 255 Va-eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-------------E~---n~ 317 (410)
T KOG0410|consen 255 VA-EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-------------EK---NL 317 (410)
T ss_pred Hh-hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-------------cc---CC
Confidence 65 89999999999998732 22222221 01122 35577888876543211 11 22
Q ss_pred EEEeccCCccChhhhHHHHHHh
Q 008807 248 VHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 248 vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.+.+||++|.|++++++++...
T Consensus 318 ~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 318 DVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred ccccccccCccHHHHHHHHHHH
Confidence 6789999999999999888653
No 33
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.72 E-value=1.1e-17 Score=169.84 Aligned_cols=154 Identities=25% Similarity=0.311 Sum_probs=112.5
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCce
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVL 246 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (553)
+...|-.++..+|+||+|+|++||.+.....+...+ ..+..|+|+||+||+|... .+.|+.... +... .
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwv----t~~Wv~~lS--keyP-T 275 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWV----TAKWVRHLS--KEYP-T 275 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHH----HHHHHHHHh--hhCc-c
Confidence 334566778889999999999999887766665544 3467899999999998643 345653221 2222 1
Q ss_pred eEEEeccCCccChhhhHHHHHHhh------cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCce
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKEK------KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTT 320 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~~------~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT 320 (553)
-.|..|-.+..|-..|++.|++.. +...|.|||.|||||||+||.|+.+..|+ ++++||-|
T Consensus 276 iAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-------------vAPIpGET 342 (572)
T KOG2423|consen 276 IAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCK-------------VAPIPGET 342 (572)
T ss_pred eeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhccccc-------------ccCCCCcc
Confidence 134456677788888888877642 34579999999999999999999987665 67899999
Q ss_pred eecEEEEeecCCcEEEEcCCccCCC
Q 008807 321 LGPIQIDAFLGGGKLYDTPGVHLHH 345 (553)
Q Consensus 321 ~~~i~i~~~~~~~~liDTPGi~~~~ 345 (553)
. .-+...+-.+.+|||+||+..+.
T Consensus 343 K-VWQYItLmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 343 K-VWQYITLMKRIFLIDCPGVVYPS 366 (572)
T ss_pred h-HHHHHHHHhceeEecCCCccCCC
Confidence 7 33333344678899999998664
No 34
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.71 E-value=3.6e-17 Score=163.07 Aligned_cols=158 Identities=21% Similarity=0.162 Sum_probs=106.0
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEec
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTS 252 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iS 252 (553)
+++++.+...|+||.|-|++-|..+....+.+.+..+|.|+|+||+||++.......+ +++. ++.. ..++..+
T Consensus 38 r~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~i-q~~~----~~~~--~~~~~~~ 110 (335)
T KOG2485|consen 38 RAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKII-QYLE----WQNL--ESYIKLD 110 (335)
T ss_pred HHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHH-HHHH----hhcc--cchhhhh
Confidence 4566667789999999999999888888888887889999999999999854333322 2221 1211 2222222
Q ss_pred cC--CccChhhhHHHHHH-------hh----cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCc
Q 008807 253 SK--SLAGIVGVASEIQK-------EK----KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGT 319 (553)
Q Consensus 253 Ak--~g~gi~~Ll~~L~~-------~~----~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGT 319 (553)
.. ...++..++..+.. .. .+..+||+|.||||||||||+++..+..+ ++.+.+.+.||.
T Consensus 111 c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk--------~k~a~vG~~pGV 182 (335)
T KOG2485|consen 111 CNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRK--------KKAARVGAEPGV 182 (335)
T ss_pred hhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhh--------ccceeccCCCCc
Confidence 22 22234444433221 11 23489999999999999999998754322 245678899999
Q ss_pred eeecEEE-Eeec-CCcEEEEcCCccCCC
Q 008807 320 TLGPIQI-DAFL-GGGKLYDTPGVHLHH 345 (553)
Q Consensus 320 T~~~i~i-~~~~-~~~~liDTPGi~~~~ 345 (553)
|+...+. .+.. .-.+++||||+..|+
T Consensus 183 T~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 183 TRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred eeeehhheEeccCCceEEecCCCcCCCC
Confidence 9975552 2222 236899999998873
No 35
>COG1159 Era GTPase [General function prediction only]
Probab=99.47 E-value=2.9e-13 Score=135.26 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=124.5
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
..-|+++|..|+|++++|+..-..+.--+.+..-+| |..+.+.......+..|+||+|+ +...+.+.+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTT-------R~~I~GI~t~~~~QiIfvDTPGi----h~pk~~l~~~ 74 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTT-------RNRIRGIVTTDNAQIIFVDTPGI----HKPKHALGEL 74 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchh-------hhheeEEEEcCCceEEEEeCCCC----CCcchHHHHH
Confidence 346889999999999999877766665665544443 47787888888889999999886 3446778889
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChh----hHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCce
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGS----FLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVL 246 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s----~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (553)
|.+....++.++|+|++|||+.+.... +++.+.. ...|+++++||+|....+.....+.+++ .....+.
T Consensus 75 m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~-----~~~~~f~ 147 (298)
T COG1159 75 MNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFL-----KKLLPFK 147 (298)
T ss_pred HHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHH-----HhhCCcc
Confidence 999999999999999999999874332 3333333 2579999999999987764222222322 3456667
Q ss_pred eEEEeccCCccChhhhHHHHHHhhcc
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKEKKG 272 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~~~g 272 (553)
.++.+||++|.|++.|++.+.++++.
T Consensus 148 ~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 148 EIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred eEEEeeccccCCHHHHHHHHHHhCCC
Confidence 89999999999999999999887754
No 36
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.34 E-value=1.2e-11 Score=134.34 Aligned_cols=175 Identities=17% Similarity=0.056 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccE
Q 008807 70 AKEAAKVVVRDSKKKRKKKDKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHM 149 (553)
Q Consensus 70 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~ 149 (553)
+++++.....+++++.+..+...++..+|+.|+|++++++........++.+..+.| +|.+...+...+....
T Consensus 194 ~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT-------~d~~~~~i~~~g~~i~ 266 (449)
T PRK05291 194 ELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTT-------RDVIEEHINLDGIPLR 266 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-------cccEEEEEEECCeEEE
Confidence 333333333334433333344568999999999999999987654434444443444 3888888888777788
Q ss_pred EEecCCCCCccCCCccccHHH--HHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCCh
Q 008807 150 ITAVGGNGGYAGGKQFVSADE--LREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDF 227 (553)
Q Consensus 150 ~~dTaG~vgf~~~~~~~l~e~--~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~ 227 (553)
++||+|... +....+. ++.++. .+.++|++++|+|++++.......+.....+.|+++|+||+||.+....
T Consensus 267 l~DT~G~~~-----~~~~ie~~gi~~~~~-~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~- 339 (449)
T PRK05291 267 LIDTAGIRE-----TDDEVEKIGIERSRE-AIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDL- 339 (449)
T ss_pred EEeCCCCCC-----CccHHHHHHHHHHHH-HHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchh-
Confidence 999987631 1122333 344444 4668999999999987643221122111356899999999999754321
Q ss_pred hhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 228 NCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
. ......++.+||+++.|+++|++.|.+...
T Consensus 340 ~-------------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 340 E-------------EENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred h-------------hccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 0 011145789999999999999999987553
No 37
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.8e-11 Score=129.23 Aligned_cols=163 Identities=17% Similarity=0.059 Sum_probs=117.2
Q ss_pred hcccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccc
Q 008807 87 KKDKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 87 ~~~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~ 166 (553)
--+.-.++.++|..|+|++++|+..-...---+.+- .+.+||++.....+.++...++||||+. +..+.
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI-------~GTTRDviee~i~i~G~pv~l~DTAGiR----et~d~ 281 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDI-------AGTTRDVIEEDINLNGIPVRLVDTAGIR----ETDDV 281 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCC-------CCCccceEEEEEEECCEEEEEEecCCcc----cCccH
Confidence 345556899999999999999986654322222221 2357899999999999999999999974 44444
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHH-HhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCc
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRD-LAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNV 245 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~-~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~ 245 (553)
.+..-.++..+.+++||+|++|+|++.+.......+.. ...++|+++|+||+||.++... ... ++ .+-
T Consensus 282 VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~-~~~-~~---------~~~ 350 (454)
T COG0486 282 VERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIEL-ESE-KL---------ANG 350 (454)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhccccccc-chh-hc---------cCC
Confidence 34444567777889999999999999864333333333 3356899999999999876532 111 11 111
Q ss_pred eeEEEeccCCccChhhhHHHHHHhhc
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
..++.+||+++.|++.|.++|.+...
T Consensus 351 ~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 351 DAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred CceEEEEecCccCHHHHHHHHHHHHh
Confidence 34789999999999999999987654
No 38
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.29 E-value=3.4e-11 Score=116.62 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=100.5
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC-ccEEEecCCCCCccCCCcccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH-GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~-~~~~~dTaG~vgf~~~~~~~l 167 (553)
.....+.+.|...+|++++++..-... .+.....+.|. ++.+..+...++ ...++||+|.. ...+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~-------~~~~~~~~~~~~~~~~i~Dt~G~~---~~~~~~~ 107 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATL-------DPTTRRLRLPDGREVLLTDTVGFI---RDLPHQL 107 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceec-------cceeEEEEecCCceEEEeCCCccc---cCCCHHH
Confidence 344688999999999999998776542 22222223333 556666666554 67889997752 2222223
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCChhh-----HHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNGSF-----LARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~-----~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
.+.+...+.. ...+|++++|+|++++.... ...+..+. .+.|+++|+||+|+.+.... ..+. .
T Consensus 108 ~~~~~~~~~~-~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~----~~~~------~ 176 (204)
T cd01878 108 VEAFRSTLEE-VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL----EERL------E 176 (204)
T ss_pred HHHHHHHHHH-HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH----HHHh------h
Confidence 3455555543 45899999999998764221 12222221 25799999999999765321 1111 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.. ...++.+||+++.|++++++.|.+
T Consensus 177 ~~-~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 177 AG-RPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred cC-CCceEEEEcCCCCCHHHHHHHHHh
Confidence 12 246899999999999999888764
No 39
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.28 E-value=5.1e-12 Score=133.24 Aligned_cols=63 Identities=41% Similarity=0.601 Sum_probs=54.2
Q ss_pred hcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCc--EEEEcCCccCCC
Q 008807 270 KKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGG--KLYDTPGVHLHH 345 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~--~liDTPGi~~~~ 345 (553)
..|.+++++|.||||||||+|+|+++ .+++|+++||||||.++-.+.-+|. .|+||.|++...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~-------------d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~ 279 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGR-------------DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD 279 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcC-------------CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc
Confidence 45789999999999999999999986 5789999999999999887655553 599999998653
No 40
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.28 E-value=2.3e-11 Score=123.56 Aligned_cols=162 Identities=12% Similarity=0.022 Sum_probs=103.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
.+..+|..++|++++++..-......+.+....| ++.+-......+.+..++||+|.... .+.+.+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TT-------r~~i~~i~~~~~~qii~vDTPG~~~~----~~~l~~~~~ 70 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTT-------RNRISGIHTTGASQIIFIDTPGFHEK----KHSLNRLMM 70 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcc-------cCcEEEEEEcCCcEEEEEECcCCCCC----cchHHHHHH
Confidence 4677899999999999987765433333322222 24443444444556789999886321 223345566
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEE
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHL 250 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~ 250 (553)
+.....+.++|+|++|+|+++..... ..+...+ .+.|+++|+||+|+.........+..+ ....++..++.
T Consensus 71 ~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~------~~~~~~~~v~~ 143 (270)
T TIGR00436 71 KEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKY------AILEDFKDIVP 143 (270)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHH------HhhcCCCceEE
Confidence 66667778999999999998754322 2222221 368999999999997432211111111 11223347899
Q ss_pred eccCCccChhhhHHHHHHhhcc
Q 008807 251 TSSKSLAGIVGVASEIQKEKKG 272 (553)
Q Consensus 251 iSAk~g~gi~~Ll~~L~~~~~g 272 (553)
+||++|.|+++|++.|.+.++.
T Consensus 144 iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 144 ISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred EecCCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999886654
No 41
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.19 E-value=3.2e-11 Score=109.77 Aligned_cols=140 Identities=16% Similarity=0.191 Sum_probs=101.7
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
++-..|..=+|+.+++|.......=|. .++-+. ++..++||+|. |+. ...|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~-----------------KTq~i~---~~~~~IDTPGE--yiE------~~~~y 54 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYK-----------------KTQAIE---YYDNTIDTPGE--YIE------NPRFY 54 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcC-----------------ccceeE---ecccEEECChh--hee------CHHHH
Confidence 556678888899999998876422221 112222 34567999975 432 34566
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEec
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTS 252 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iS 252 (553)
..|.....+||+|++|.|+.++...+.+.+.... ++|+|-|+||+|+.+.+.+.++.++|+. ..++..++.+|
T Consensus 55 ~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~------~aG~~~if~vS 127 (143)
T PF10662_consen 55 HALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLK------NAGVKEIFEVS 127 (143)
T ss_pred HHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHH------HcCCCCeEEEE
Confidence 6666666799999999999998777777776653 6899999999999855555666666653 23446789999
Q ss_pred cCCccChhhhHHHHH
Q 008807 253 SKSLAGIVGVASEIQ 267 (553)
Q Consensus 253 Ak~g~gi~~Ll~~L~ 267 (553)
+.++.|+++|.+.|+
T Consensus 128 ~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 128 AVTGEGIEELKDYLE 142 (143)
T ss_pred CCCCcCHHHHHHHHh
Confidence 999999999998875
No 42
>COG1159 Era GTPase [General function prediction only]
Probab=99.14 E-value=3.9e-11 Score=120.15 Aligned_cols=59 Identities=37% Similarity=0.407 Sum_probs=48.1
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLHH 345 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~~ 345 (553)
-|++||.||||||||+|+|++. .-+++|+.|.|||+.+.-....++ ..++||||++.+.
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~-------------KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQ-------------KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcC-------------ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 6899999999999999999986 356899999999987664433333 3588999999874
No 43
>PRK15494 era GTPase Era; Provisional
Probab=99.14 E-value=5e-10 Score=117.41 Aligned_cols=164 Identities=14% Similarity=0.061 Sum_probs=105.9
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
...+..+|..|+|++++++..-.....-+.+... .+++.+.......+.+..++||+|.... ...+...
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~-------tTr~~~~~~~~~~~~qi~~~DTpG~~~~----~~~l~~~ 120 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQ-------TTRSIITGIITLKDTQVILYDTPGIFEP----KGSLEKA 120 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCC-------CccCcEEEEEEeCCeEEEEEECCCcCCC----cccHHHH
Confidence 3478999999999999998765432222222211 2235565666666777899999986321 1123455
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
+.+.....+.++|+|++|+|..+........+...+ .+.|.++|+||+|+... ....+.+++ ........+
T Consensus 121 ~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~--~~~~~~~~l-----~~~~~~~~i 193 (339)
T PRK15494 121 MVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK--YLNDIKAFL-----TENHPDSLL 193 (339)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc--cHHHHHHHH-----HhcCCCcEE
Confidence 656565667899999999998764333322222221 25688899999998643 222233332 122223568
Q ss_pred EEeccCCccChhhhHHHHHHhhcc
Q 008807 249 HLTSSKSLAGIVGVASEIQKEKKG 272 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~~~g 272 (553)
+.+||++|.|+++|++.|.+.++.
T Consensus 194 ~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 194 FPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred EEEeccCccCHHHHHHHHHHhCCC
Confidence 999999999999999999876643
No 44
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=6.4e-11 Score=124.79 Aligned_cols=62 Identities=40% Similarity=0.601 Sum_probs=53.2
Q ss_pred hhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCc--EEEEcCCccC
Q 008807 269 EKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGG--KLYDTPGVHL 343 (553)
Q Consensus 269 ~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~--~liDTPGi~~ 343 (553)
...|.+++++|.||||||||+|+|.+. .+.+||+.||||||.++..+--+|. .|.||.|++.
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~-------------drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSRE-------------DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcC-------------CceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 345789999999999999999999976 5779999999999998887654453 5999999987
No 45
>PRK00089 era GTPase Era; Reviewed
Probab=99.09 E-value=5.9e-10 Score=114.33 Aligned_cols=165 Identities=14% Similarity=0.062 Sum_probs=104.3
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
..-++.+|..++|+++++++.-......+.+..- .+++.+-..+.....+..++||+|... ....+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~-------tt~~~i~~i~~~~~~qi~~iDTPG~~~----~~~~l~~~ 73 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ-------TTRHRIRGIVTEDDAQIIFVDTPGIHK----PKRALNRA 73 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCC-------cccccEEEEEEcCCceEEEEECCCCCC----chhHHHHH
Confidence 4467889999999999999876544333322111 122334344444446788999988631 11233455
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
+.......+.++|+|++|+|+.+........+...+ .+.|+++|+||+|+...... +...+ +.+ ....++.++
T Consensus 74 ~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~---l~~~~-~~l-~~~~~~~~i 148 (292)
T PRK00089 74 MNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEE---LLPLL-EEL-SELMDFAEI 148 (292)
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHH---HHHHH-HHH-HhhCCCCeE
Confidence 556666677899999999999883322223333322 25799999999999843211 11111 111 122344678
Q ss_pred EEeccCCccChhhhHHHHHHhhc
Q 008807 249 HLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
+.+||+++.|+++|++.|.+.++
T Consensus 149 ~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 149 VPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred EEecCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999887654
No 46
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.08 E-value=7.5e-10 Score=115.63 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=101.9
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec-CCccEEEecCCCCCccCCCccccH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL-SHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
-..+|.+++..++|++++|.......+- +.+-.|.|+ ++........ ...+.++||+|.. .... . .
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~-------~p~~G~v~~~~~~~~~i~D~PGli---~ga~-~-~ 223 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTL-------HPNLGVVRVDDYKSFVIADIPGLI---EGAS-E-G 223 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCcee-------CceEEEEEeCCCcEEEEEeCCCcc---CCCC-c-c
Confidence 4458999999999999999987654332 333346666 6666766653 3457899998752 2111 1 1
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh---CCCCEEEEEEcccCCCCCCChh-hHHHHHHHHHh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA---GANPIILVVTKVDLLPKGTDFN-CVGDWVVEATT 239 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~---~~~pvIlVlNKiDLl~~~~~~~-~~~~~~~~~~~ 239 (553)
..+.......++.++++++|+|+++.+ ..+..++.... ..+|+++|+||+|+.+...... ....+.
T Consensus 224 ~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----- 298 (335)
T PRK12299 224 AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL----- 298 (335)
T ss_pred ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH-----
Confidence 112222222346889999999999764 22333333321 3589999999999975542111 111111
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|+++|++.|.+.+
T Consensus 299 -~~~~-~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 299 -AALG-GPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred -HhcC-CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 1222 4688999999999999999887644
No 47
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.08 E-value=8.2e-10 Score=101.09 Aligned_cols=152 Identities=17% Similarity=0.128 Sum_probs=96.1
Q ss_pred cCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHH
Q 008807 96 SAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKL 175 (553)
Q Consensus 96 ~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l 175 (553)
..|..++|++++++.......-++..... ..++..+..+...++...++||+|...+.. .....+....
T Consensus 2 l~G~~~~GKssl~~~l~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~----~~~~~~~~~~ 70 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPG-------VTRDRIYGEAEWGGREFILIDTGGIEPDDE----GISKEIREQA 70 (157)
T ss_pred ccCCCCCCHHHHHHHHhCCcEEeecCCCC-------ceeCceeEEEEECCeEEEEEECCCCCCchh----HHHHHHHHHH
Confidence 46788999999998776543223322211 122455556666667778999988653321 1233454455
Q ss_pred HHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEecc
Q 008807 176 SHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSS 253 (553)
Q Consensus 176 ~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSA 253 (553)
......+|++++|+|+.+........+...+ .+.|+++|+||+|+...... ... + ..++...++.+||
T Consensus 71 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~-----~--~~~~~~~~~~~Sa 140 (157)
T cd01894 71 ELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAE-----F--YSLGFGEPIPISA 140 (157)
T ss_pred HHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHH-----H--HhcCCCCeEEEec
Confidence 5556789999999999864322222222222 25899999999999764321 111 1 1233346789999
Q ss_pred CCccChhhhHHHHHH
Q 008807 254 KSLAGIVGVASEIQK 268 (553)
Q Consensus 254 k~g~gi~~Ll~~L~~ 268 (553)
+++.|++++++.|.+
T Consensus 141 ~~~~gv~~l~~~l~~ 155 (157)
T cd01894 141 EHGRGIGDLLDAILE 155 (157)
T ss_pred ccCCCHHHHHHHHHh
Confidence 999999999988865
No 48
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.06 E-value=1.5e-10 Score=107.52 Aligned_cols=57 Identities=30% Similarity=0.318 Sum_probs=40.3
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee--cCCcEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF--LGGGKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~--~~~~~liDTPGi~~~ 344 (553)
+++++|.||||||||+|+|.+. +..++++||||.+...-... +....++||||+...
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~--------------~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl 60 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGA--------------KQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSL 60 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT--------------SEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSS
T ss_pred EEEEECCCCCCHHHHHHHHHCC--------------CceecCCCCCCeeeeeEEEEecCceEEEEECCCcccC
Confidence 6899999999999999999986 23478899999986543332 223469999998543
No 49
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.06 E-value=9e-10 Score=117.27 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=103.4
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC-ccEEEecCCCCCccCCCc--ccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH-GHMITAVGGNGGYAGGKQ--FVS 167 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~-~~~~~dTaG~vgf~~~~~--~~l 167 (553)
...|.+++..++|++++|+......+ -+.+..|.|+ .+....+..... .+.++||+|.. .... ..+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~-------~p~~Giv~~~~~~~i~~vDtPGi~---~~a~~~~~L 227 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTL-------VPNLGVVRVDDERSFVVADIPGLI---EGASEGAGL 227 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCcc-------CcEEEEEEeCCCcEEEEEeCCCcc---ccccchhhH
Confidence 34899999999999999999876655 4444556665 777777776544 47899998752 2110 112
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCC--------hhhHHHHHHHh---CCCCEEEEEEcccCCCCCCChhhHHHHHHH
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFN--------GSFLARIRDLA---GANPIILVVTKVDLLPKGTDFNCVGDWVVE 236 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~--------~s~~~~l~~~~---~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~ 236 (553)
...| + ..++++|+|++|+|++.++ ..+..++.... ..+|+++|+||+|+.........+.++
T Consensus 228 g~~~---l-~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l--- 300 (390)
T PRK12298 228 GIRF---L-KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAI--- 300 (390)
T ss_pred HHHH---H-HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHH---
Confidence 2233 2 3467899999999988331 12223333221 358999999999997543211112221
Q ss_pred HHhhcccCc-eeEEEeccCCccChhhhHHHHHHhhc
Q 008807 237 ATTKKKLNV-LSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 237 ~~~~~~l~~-~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
. +.++. ..++.+||+++.|+++|++.|.+.++
T Consensus 301 --~-~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 301 --V-EALGWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred --H-HHhCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 1 11222 25899999999999999998876553
No 50
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.03 E-value=2.2e-09 Score=99.11 Aligned_cols=157 Identities=14% Similarity=0.069 Sum_probs=89.1
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec-CCccEEEecCCCCCccCCCccccHHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL-SHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
+..+|..++|++++++.......+.++.+. ....+.+......... +....++||+|. +.|.
T Consensus 3 i~i~G~~~~GKssl~~~l~~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~DtpG~------------~~~~ 65 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALTGIETDRLPEEK-----KRGITIDLGFAYLDLPSGKRLGFIDVPGH------------EKFI 65 (164)
T ss_pred EEEEecCCCCHHHHHHHHhCcccccchhhh-----ccCceEEeeeEEEEecCCcEEEEEECCCh------------HHHH
Confidence 456788999999999876532222221110 0000112223333333 456789999874 3344
Q ss_pred HHHHHhhhcccEEEEEcccCCCC-hhhHHH--HHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEE
Q 008807 173 EKLSHLRREKALIVKLVDIVDFN-GSFLAR--IRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVH 249 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~-~s~~~~--l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi 249 (553)
..+......+|++++|+|+.+.. ...... +....+.+|+++|+||+|+..... .....+.+.+.+.........++
T Consensus 66 ~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04171 66 KNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDW-LELVEEEIRELLAGTFLADAPIF 144 (164)
T ss_pred HHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHH-HHHHHHHHHHHHHhcCcCCCcEE
Confidence 44445567899999999998622 111111 122223458999999999975421 11111112222222111225689
Q ss_pred EeccCCccChhhhHHHHHH
Q 008807 250 LTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 250 ~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+||+++.|++++++.+.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEeCCCCcCHHHHHHHHhh
Confidence 9999999999999887753
No 51
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.01 E-value=3.9e-10 Score=104.67 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=94.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
+++.+|-.+.|++++|+...... -++.+ ..+.+.+...+++........++|+||+..+... ...+.+.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n-------~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~---s~ee~v~ 70 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGN-------WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK---SEEERVA 70 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEE-------STTSSSEEEEEEEEETTEEEEEEE----SSSSSS---SHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecC-------CCCCCeeeeeEEEEecCceEEEEECCCcccCCCC---CcHHHHH
Confidence 46778888999999998766543 22211 1123346777888887788899999998544222 2233332
Q ss_pred HHHHHhhhcccEEEEEcccCCCChh--hHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEE
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGS--FLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHL 250 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s--~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~ 250 (553)
..... ..+.|+|++|+|++....+ +...+.+ -+.|+++|+||+|++.+....-... .+ .+.++ .+++.
T Consensus 71 ~~~l~-~~~~D~ii~VvDa~~l~r~l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~-~L-----s~~Lg-~pvi~ 140 (156)
T PF02421_consen 71 RDYLL-SEKPDLIIVVVDATNLERNLYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAE-KL-----SERLG-VPVIP 140 (156)
T ss_dssp HHHHH-HTSSSEEEEEEEGGGHHHHHHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HH-HH-----HHHHT-S-EEE
T ss_pred HHHHh-hcCCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHH-HH-----HHHhC-CCEEE
Confidence 22211 3589999999999875433 2233333 3799999999999986643211111 11 12234 46999
Q ss_pred eccCCccChhhhHHHH
Q 008807 251 TSSKSLAGIVGVASEI 266 (553)
Q Consensus 251 iSAk~g~gi~~Ll~~L 266 (553)
+||+++.|+++|.++|
T Consensus 141 ~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 141 VSARTGEGIDELKDAI 156 (156)
T ss_dssp EBTTTTBTHHHHHHHH
T ss_pred EEeCCCcCHHHHHhhC
Confidence 9999999999998765
No 52
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.99 E-value=5.2e-09 Score=95.61 Aligned_cols=153 Identities=16% Similarity=0.093 Sum_probs=97.0
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
++...|..++|+++.+++.......++.+....+ .+..+..+...+....++||+|...+... .....+.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~DtpG~~~~~~~---~~~~~~~ 72 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTT-------RDVIEESIDIGGIPVRLIDTAGIRETEDE---IEKIGIE 72 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCc-------cceEEEEEEeCCEEEEEEECCCcCCCcch---HHHHHHH
Confidence 4567789999999999877654322222211111 24555555555556789999886432211 1112233
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEec
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTS 252 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iS 252 (553)
... .....+|++++|+|+.+........+.......|+++|+||+|+.+.... . .... ...++.+|
T Consensus 73 ~~~-~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-------~-----~~~~-~~~~~~~S 138 (157)
T cd04164 73 RAR-EAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-------L-----SLLA-GKPIIAIS 138 (157)
T ss_pred HHH-HHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-------c-----cccC-CCceEEEE
Confidence 333 33558999999999997654444444333357899999999999865421 0 1111 25688999
Q ss_pred cCCccChhhhHHHHHHh
Q 008807 253 SKSLAGIVGVASEIQKE 269 (553)
Q Consensus 253 Ak~g~gi~~Ll~~L~~~ 269 (553)
|+++.|+++|++.|.+.
T Consensus 139 a~~~~~v~~l~~~l~~~ 155 (157)
T cd04164 139 AKTGEGLDELKEALLEL 155 (157)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999988753
No 53
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.97 E-value=6.2e-09 Score=95.56 Aligned_cols=153 Identities=15% Similarity=0.076 Sum_probs=91.8
Q ss_pred CCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHH
Q 008807 97 AVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLS 176 (553)
Q Consensus 97 ~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~ 176 (553)
+|..+.|++++++...... -++......| .+..++.+...++...++||+|...|.... ..+.+.....
T Consensus 2 ~G~~~~GKssl~~~~~~~~-~~~~~~~~~t-------~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~~ 70 (158)
T cd01879 2 VGNPNVGKTTLFNALTGAR-QKVGNWPGVT-------VEKKEGRFKLGGKEIEIVDLPGTYSLSPYS---EDEKVARDFL 70 (158)
T ss_pred CCCCCCCHHHHHHHHhcCc-ccccCCCCcc-------cccceEEEeeCCeEEEEEECCCccccCCCC---hhHHHHHHHh
Confidence 5788899999998775431 1111111111 244556666666678899999865443211 1223322222
Q ss_pred HhhhcccEEEEEcccCCCChhhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCC
Q 008807 177 HLRREKALIVKLVDIVDFNGSFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKS 255 (553)
Q Consensus 177 ~~~~~adlIl~VVD~~d~~~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~ 255 (553)
.. +.+|++++|+|+.++.... ..+..+. .++|+++|+||+|+.+..........+ ...++ ..++.+||.+
T Consensus 71 ~~-~~~d~vi~v~d~~~~~~~~-~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~------~~~~~-~~~~~iSa~~ 141 (158)
T cd01879 71 LG-EKPDLIVNVVDATNLERNL-YLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKL------SELLG-VPVVPTSARK 141 (158)
T ss_pred cC-CCCcEEEEEeeCCcchhHH-HHHHHHHHcCCCEEEEEehhhhcccccchhhHHHH------HHhhC-CCeEEEEccC
Confidence 11 5899999999998764322 2221111 468999999999997654222112221 11223 4689999999
Q ss_pred ccChhhhHHHHHHh
Q 008807 256 LAGIVGVASEIQKE 269 (553)
Q Consensus 256 g~gi~~Ll~~L~~~ 269 (553)
+.|++++++.|.+.
T Consensus 142 ~~~~~~l~~~l~~~ 155 (158)
T cd01879 142 GEGIDELKDAIAEL 155 (158)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999888654
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.97 E-value=2.5e-09 Score=102.44 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=101.8
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCch--------hh---HhhhccCccceEEEEEE--ecCCccEEEecCCCC
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDT--------YE---LKKKHHQFKTVLCGRCR--LLSHGHMITAVGGNG 157 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~--------f~---t~~~~~~~rd~ic~Rc~--~l~~~~~~~dTaG~v 157 (553)
.+.+...|...+|+++++...-.. .|...... .. ........-+.....+. ...+...++||||.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~- 80 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGK-AGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH- 80 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH-HTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS-
T ss_pred EEEEEEECCCCCCcEeechhhhhh-ccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc-
Confidence 446778888899999888665532 23222210 00 00111223355666666 66678899999874
Q ss_pred CccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHH
Q 008807 158 GYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVV 235 (553)
Q Consensus 158 gf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~ 235 (553)
..|.......+..+|++|+|||+.+.......++...+ .+.|+++|+||+|+... ......+.+.
T Consensus 81 -----------~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~--~~~~~~~~~~ 147 (188)
T PF00009_consen 81 -----------EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEK--ELEEIIEEIK 147 (188)
T ss_dssp -----------HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHH--HHHHHHHHHH
T ss_pred -----------cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhh--hHHHHHHHHH
Confidence 23555555567799999999999876544433333222 46889999999999822 1222222222
Q ss_pred HHH-hhcccC---ceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 236 EAT-TKKKLN---VLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 236 ~~~-~~~~l~---~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
+.+ .....+ ..+++++||++|+|+++|++.|.+.++
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122 111221 367999999999999999999887653
No 55
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.96 E-value=6.4e-09 Score=98.32 Aligned_cols=164 Identities=12% Similarity=-0.005 Sum_probs=97.6
Q ss_pred cccCCCcccccCccccccCCCCCcccCCch----h----hHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCcc
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDT----Y----ELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~----f----~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~ 165 (553)
+..+|..++|++++++..-....+...... + ..........+..+..+........++||+|..
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-------- 73 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE-------- 73 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH--------
Confidence 456788899999999877443222111000 0 000011112234445555556677899998742
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc-
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK- 242 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~- 242 (553)
.+.......+..+|.+++|+|+.+........+...+ .+.|+++|+||+|+..+.. .....+++.+.+....
T Consensus 74 ----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~ 148 (189)
T cd00881 74 ----DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEED-LEEVLREIKELLGLIGF 148 (189)
T ss_pred ----HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhc-HHHHHHHHHHHHccccc
Confidence 2334444556689999999999875433222222222 4789999999999986432 2222333333322211
Q ss_pred ----------cCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 243 ----------LNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 243 ----------l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
....+++.+||++++|++++++.|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 149 ISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 1236789999999999999998887654
No 56
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.96 E-value=4e-09 Score=98.27 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=91.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC-ccEEEecCCCCCccCCCccccHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH-GHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~-~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
.+..+|..++|+++++++.....+ .+....+.| .++........++ +..++||+|........ ......+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t-------~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~ 72 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTT-------LVPNLGVVRVDDGRSFVVADIPGLIEGASEG-KGLGHRF 72 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccc-------cCCcceEEEcCCCCeEEEEecCcccCccccc-CCchHHH
Confidence 467789999999999998754221 111111111 1333334444444 67899998853111110 0112222
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC---h---hhHHHHHHHh---CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN---G---SFLARIRDLA---GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~---~---s~~~~l~~~~---~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
+. .+..+|++++|+|+++.. . .+...+.... ..+|+++|+||+|+.+.......+..+ . ..
T Consensus 73 ---~~-~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~----~--~~ 142 (170)
T cd01898 73 ---LR-HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKEL----L--KE 142 (170)
T ss_pred ---HH-HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHH----H--hh
Confidence 22 245789999999999862 1 2223333321 258899999999997654322222222 1 11
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.....++.+||+++.|++++++.|.+
T Consensus 143 ~~~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 143 LWGKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred CCCCCEEEEecCCCCCHHHHHHHHHh
Confidence 11245789999999999999988764
No 57
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.96 E-value=7.3e-09 Score=111.97 Aligned_cols=188 Identities=10% Similarity=0.045 Sum_probs=110.1
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...++..+|..++|++++++..-.+..-.+.+... .+++.+.......+....++||+|...+..... ..+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~g-------tt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~--~~e 241 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAG-------TTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTE--GVE 241 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCC-------ceECcEeEEEEECCcEEEEEECCCccccccchh--hHH
Confidence 34578999999999999998764321111111111 123555555555556678999998754332211 122
Q ss_pred HHH-HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCce
Q 008807 170 ELR-EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVL 246 (553)
Q Consensus 170 ~~~-~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (553)
.+. ......+..+|++|+|+|+.+........+...+ .+.|+++|+||+||+........+.+.+...+ ..++..
T Consensus 242 ~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~ 319 (429)
T TIGR03594 242 KYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKL--PFLDFA 319 (429)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhc--ccCCCC
Confidence 221 2223346789999999999875433333333222 36899999999999822111222222221111 123345
Q ss_pred eEEEeccCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhh
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.++++||++|.|++++++.+.+....... .=+++.+|.++..
T Consensus 320 ~vi~~SA~~g~~v~~l~~~i~~~~~~~~~-------~i~t~~ln~~l~~ 361 (429)
T TIGR03594 320 PIVFISALTGQGVDKLLDAIDEVYENANR-------RISTSKLNRVLEE 361 (429)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHhcC-------cCCHHHHHHHHHH
Confidence 78999999999999999988765433211 1134566777654
No 58
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.95 E-value=4.7e-09 Score=95.22 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=86.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
++..+|..+.|++++++..-....-|. .. ..+.. ...++||+|.. . ...+.++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~~---------------~t--~~~~~---~~~~iDt~G~~--~-----~~~~~~~ 54 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILYK---------------KT--QAVEY---NDGAIDTPGEY--V-----ENRRLYS 54 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccccc---------------cc--eeEEE---cCeeecCchhh--h-----hhHHHHH
Confidence 467789999999999987654311110 11 11222 12688998751 1 1123344
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEec
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTS 252 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iS 252 (553)
.... ...++|++++|+|+.+........+.... .+|+++|+||+||.+.....+...++.. ..+...++.+|
T Consensus 55 ~~~~-~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~S 126 (142)
T TIGR02528 55 ALIV-TAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLE------TAGAEPIFEIS 126 (142)
T ss_pred HHHH-HhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHH------HcCCCcEEEEe
Confidence 4333 46799999999999876643333343332 4599999999999754333333333321 12223578999
Q ss_pred cCCccChhhhHHHHH
Q 008807 253 SKSLAGIVGVASEIQ 267 (553)
Q Consensus 253 Ak~g~gi~~Ll~~L~ 267 (553)
|+++.|++++++.|.
T Consensus 127 a~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 127 SVDEQGLEALVDYLN 141 (142)
T ss_pred cCCCCCHHHHHHHHh
Confidence 999999999987763
No 59
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.95 E-value=3.7e-09 Score=98.37 Aligned_cols=154 Identities=13% Similarity=0.046 Sum_probs=91.0
Q ss_pred cccCCCcccccCccccccCCC---CCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESD---APGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~---~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
+..+|...+|++++++..... .+|+.......|. ..........+....++||+|.. .
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~-------~~~~~~~~~~~~~~~l~Dt~G~~------------~ 62 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTV-------GLNIGTIEVGNARLKFWDLGGQE------------S 62 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCcc-------ccceEEEEECCEEEEEEECCCCh------------h
Confidence 456788889999998865321 1244333222221 22223444445567889998742 3
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhccc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKL 243 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l 243 (553)
+..........+|++++|+|+.+... .....+..+. .+.|+++|+||+|+.+.. ....+.+++.........
T Consensus 63 ~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~ 141 (167)
T cd04160 63 LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL-SVEEIKEVFQDKAEEIGR 141 (167)
T ss_pred hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC-CHHHHHHHhccccccccC
Confidence 33344455678999999999987531 1111122111 358999999999986543 233344443211111111
Q ss_pred CceeEEEeccCCccChhhhHHHHH
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
....++.+||++|.|++++++.|.
T Consensus 142 ~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 142 RDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred CceEEEEeeCCCCcCHHHHHHHHh
Confidence 224689999999999999988775
No 60
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.94 E-value=1e-09 Score=104.57 Aligned_cols=58 Identities=33% Similarity=0.378 Sum_probs=45.6
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
..|+|+|.||||||||||+|.+.. .-+.+|..||.|+- +......+...++|.||+--
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k------------~LArtSktPGrTq~-iNff~~~~~~~lVDlPGYGy 82 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQK------------NLARTSKTPGRTQL-INFFEVDDELRLVDLPGYGY 82 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCc------------ceeecCCCCCccce-eEEEEecCcEEEEeCCCccc
Confidence 379999999999999999999852 22458999999983 44444455578999999853
No 61
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.93 E-value=4.9e-09 Score=113.97 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=102.1
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
...|.++++.++|++++|.......+- +.+-.|.|+ ++....+......+.++||+|+. ... +. ...
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl-------~P~lGvv~~~~~~f~laDtPGli---ega-s~-g~g 225 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTL-------VPNLGVVQAGDTRFTVADVPGLI---PGA-SE-GKG 225 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccc-------cceEEEEEECCeEEEEEECCCCc---ccc-ch-hhH
Confidence 348999999999999999988754432 223346665 77777777766778899998752 111 00 111
Q ss_pred HH-HHHHHhhhcccEEEEEcccCCCC------hh---hHHHHHHH------------hCCCCEEEEEEcccCCCCCCChh
Q 008807 171 LR-EKLSHLRREKALIVKLVDIVDFN------GS---FLARIRDL------------AGANPIILVVTKVDLLPKGTDFN 228 (553)
Q Consensus 171 ~~-~~l~~~~~~adlIl~VVD~~d~~------~s---~~~~l~~~------------~~~~pvIlVlNKiDLl~~~~~~~ 228 (553)
+. +.+.+ ++.+|+||||||+++.. .. +..+|..+ +..+|+|+|+||+|+.....
T Consensus 226 Lg~~fLrh-ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e--- 301 (500)
T PRK12296 226 LGLDFLRH-IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE--- 301 (500)
T ss_pred HHHHHHHH-HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH---
Confidence 21 22333 56899999999997532 11 22233222 13689999999999864321
Q ss_pred hHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 229 CVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
+.+++...+.. .+ ..++.+||+++.|+++|+..|.+.+.
T Consensus 302 -l~e~l~~~l~~--~g-~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 302 -LAEFVRPELEA--RG-WPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred -HHHHHHHHHHH--cC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222222221 22 46899999999999999988876543
No 62
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.93 E-value=9.7e-09 Score=108.44 Aligned_cols=187 Identities=13% Similarity=0.095 Sum_probs=122.4
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...+++.+|.-+.|++++++..-++.---+.+. -+.+||.+..-....+....++||||..-=. .-....|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~-------aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~--ki~e~~E 247 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDI-------AGTTRDSIDIEFERDGRKYVLIDTAGIRRKG--KITESVE 247 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCC-------CCccccceeeeEEECCeEEEEEECCCCCccc--ccccceE
Confidence 345788888888888888876555433222221 2346788888887777778999999974211 1111112
Q ss_pred --HHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcccC
Q 008807 170 --ELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKKLN 244 (553)
Q Consensus 170 --~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~l~ 244 (553)
+..+++. +++.+|++++|+|++++......++..++ .++++++|+||.|++.++. .....++-+.. ....++
T Consensus 248 ~~Sv~rt~~-aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~--~l~~l~ 324 (444)
T COG1160 248 KYSVARTLK-AIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRR--KLPFLD 324 (444)
T ss_pred EEeehhhHh-HHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHH--Hhcccc
Confidence 1223444 46799999999999998777766666554 4689999999999997632 12222222211 123456
Q ss_pred ceeEEEeccCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhh
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..++++||+++.|+..|++.+.+.......-+ .++++|..+..
T Consensus 325 ~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri-------~Ts~LN~~l~~ 368 (444)
T COG1160 325 FAPIVFISALTGQGLDKLFEAIKEIYECATRRI-------STSLLNRVLED 368 (444)
T ss_pred CCeEEEEEecCCCChHHHHHHHHHHHHHhcccc-------CHHHHHHHHHH
Confidence 678999999999999999999876543222111 36788888865
No 63
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.93 E-value=5.8e-09 Score=108.83 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=99.4
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC-CccEEEecCCCCCccCCCccccH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS-HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~-~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
-..+|.+++..++|++++|+......+ .+.+-.|.|+ ++.-....... ....++||+|.....+.. .-+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~-------~p~ig~v~~~~~~~~~i~D~PGli~~a~~~-~gLg 226 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTL-------VPNLGVVRVDDGRSFVIADIPGLIEGASEG-AGLG 226 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCcc-------CCEEEEEEeCCceEEEEEeCCCcccCCccc-ccHH
Confidence 344899999999999999998775432 1223335555 55555555544 567899998753111000 0122
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----h---hhHHHHHHH---hCCCCEEEEEEcccCCCCCCChhhHHHHHHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----G---SFLARIRDL---AGANPIILVVTKVDLLPKGTDFNCVGDWVVEA 237 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~---s~~~~l~~~---~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~ 237 (553)
..| +.+ ++.++++|+|+|+++.+ . .+..++... +..+|+++|+||+|+.+... ...+.+++.
T Consensus 227 ~~f---lrh-ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~-- 299 (329)
T TIGR02729 227 HRF---LKH-IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELK-- 299 (329)
T ss_pred HHH---HHH-HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHH--
Confidence 233 223 45789999999998752 1 122233222 13689999999999975432 222222221
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..++ ..++.+||+++.|+++|++.|.+.
T Consensus 300 ---~~~~-~~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 300 ---KALG-KPVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred ---HHcC-CcEEEEEccCCcCHHHHHHHHHHH
Confidence 1223 468999999999999999888754
No 64
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.92 E-value=1e-08 Score=95.53 Aligned_cols=156 Identities=18% Similarity=0.210 Sum_probs=89.3
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
.+..+|..++|+++.++....... ......|.|. +..............++||+|...... .....+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~-------~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~~~~ 69 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTK-------SLFVGHFDYKYLRWQVIDTPGLLDRPL----EERNTIE 69 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCccc-------ceeEEEEccCceEEEEEECCCcCCccc----cCCchHH
Confidence 456789999999999987765422 1111112222 333333333345678999988632110 0011111
Q ss_pred -HHHHHhhhcccEEEEEcccCCCCh-------hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccC
Q 008807 173 -EKLSHLRREKALIVKLVDIVDFNG-------SFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLN 244 (553)
Q Consensus 173 -~~l~~~~~~adlIl~VVD~~d~~~-------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~ 244 (553)
..+......+|++|+|+|+++... .+...+.....+.|+++|+||+|+..... .....++ ....
T Consensus 70 ~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-~~~~~~~-------~~~~ 141 (168)
T cd01897 70 MQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFED-LSEIEEE-------EELE 141 (168)
T ss_pred HHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhh-HHHHHHh-------hhhc
Confidence 112222234689999999987532 12233333223689999999999975432 1111111 1122
Q ss_pred ceeEEEeccCCccChhhhHHHHHH
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...++.+||+++.|++++++.|.+
T Consensus 142 ~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 142 GEEVLKISTLTEEGVDEVKNKACE 165 (168)
T ss_pred cCceEEEEecccCCHHHHHHHHHH
Confidence 246889999999999999988765
No 65
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.92 E-value=9.3e-09 Score=94.31 Aligned_cols=162 Identities=16% Similarity=0.079 Sum_probs=96.8
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
..++...|.+.+|+++.++..............-.+ +...-..+...+....++||+|..... ....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~liDtpG~~~~~----~~~~~~ 71 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTT-------RNRIRGIYTDDDAQIIFVDTPGIHKPK----KKLGER 71 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCce-------eceEEEEEEcCCeEEEEEECCCCCcch----HHHHHH
Confidence 346788899999999999876544322222211111 122222333334456799998753211 112233
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
+..........+|++++|+|+.++.......+...+ ...|+++|+||+|+...... +.++.. .+ ....+...+
T Consensus 72 ~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~---~~~~~~-~~-~~~~~~~~~ 146 (168)
T cd04163 72 MVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKED---LLPLLE-KL-KELGPFAEI 146 (168)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHH---HHHHHH-HH-HhccCCCce
Confidence 444445556789999999999986333333332222 24799999999999743222 222221 11 122334578
Q ss_pred EEeccCCccChhhhHHHHHH
Q 008807 249 HLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~ 268 (553)
+.+|++++.|++++.+.|.+
T Consensus 147 ~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 147 FPISALKGENVDELLEEIVK 166 (168)
T ss_pred EEEEeccCCChHHHHHHHHh
Confidence 99999999999999988865
No 66
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.92 E-value=7.6e-09 Score=96.54 Aligned_cols=144 Identities=9% Similarity=0.027 Sum_probs=89.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
++..+|..++|++++++.... ..... ...+.+.+... .++||||... . ..+.+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~----~~~~~-------------~~~~~v~~~~~--~~iDtpG~~~--~-----~~~~~- 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQG----NYTLA-------------RKTQAVEFNDK--GDIDTPGEYF--S-----HPRWY- 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcC----CCccC-------------ccceEEEECCC--CcccCCcccc--C-----CHHHH-
Confidence 578889999999999997653 21110 01122222212 2689988531 1 11222
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEec
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTS 252 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iS 252 (553)
..+...+..+|++++|+|+.+........+.....++|+++|+||+|+... ....+.+|+ ...+.. ..++.+|
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~--~~~~~~~~~----~~~~~~-~p~~~~S 128 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA--DVAATRKLL----LETGFE-EPIFELN 128 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc--cHHHHHHHH----HHcCCC-CCEEEEE
Confidence 223334679999999999987654333444443346789999999998542 233334443 122222 4689999
Q ss_pred cCCccChhhhHHHHHHhh
Q 008807 253 SKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 253 Ak~g~gi~~Ll~~L~~~~ 270 (553)
|+++.|+++|++.+.+..
T Consensus 129 a~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 129 SHDPQSVQQLVDYLASLT 146 (158)
T ss_pred CCCccCHHHHHHHHHHhc
Confidence 999999999999987643
No 67
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.88 E-value=1.7e-08 Score=110.58 Aligned_cols=187 Identities=12% Similarity=0.033 Sum_probs=112.3
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...++..+|..++|++++++..-......+.+... .++|.+...+...+....++||+|.....+. ....+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~g-------tT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~--~~~~e 280 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAG-------TTVDPVDSLIELGGKTWRFVDTAGLRRRVKQ--ASGHE 280 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-------ccCCcceEEEEECCEEEEEEECCCccccccc--cchHH
Confidence 35688999999999999998776543222222111 2236666666666666789999986322111 01123
Q ss_pred HHHHH-HHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCce
Q 008807 170 ELREK-LSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVL 246 (553)
Q Consensus 170 ~~~~~-l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (553)
.+... ...++..+|++++|+|+++........+...+ .++|+|+|+||+||...+. ...+...+.+.+ ......
T Consensus 281 ~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~-~~~~~~~i~~~l--~~~~~~ 357 (472)
T PRK03003 281 YYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDR-RYYLEREIDREL--AQVPWA 357 (472)
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhH-HHHHHHHHHHhc--ccCCCC
Confidence 33221 12345789999999999875432221222111 4689999999999975321 111111111111 122335
Q ss_pred eEEEeccCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhh
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.++.+||++|.|++++++.+.+.......-+ +++.+|.++..
T Consensus 358 ~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i-------~t~~ln~~~~~ 399 (472)
T PRK03003 358 PRVNISAKTGRAVDKLVPALETALESWDTRI-------PTGRLNAWLGE 399 (472)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcccC-------CHHHHHHHHHH
Confidence 6889999999999999999987654332211 35678888875
No 68
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.88 E-value=2.2e-09 Score=94.43 Aligned_cols=59 Identities=41% Similarity=0.493 Sum_probs=42.5
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-ecC-CcEEEEcCCccCCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-FLG-GGKLYDTPGVHLHH 345 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~~~-~~~liDTPGi~~~~ 345 (553)
+++++|.+|||||||||+|.+.. ...++..|++|+....-.. ... ...++||||+....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-------------~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-------------LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-------------SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccc-------------cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 47899999999999999999642 2346788999997532111 222 23699999987553
No 69
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.85 E-value=3.3e-08 Score=91.58 Aligned_cols=165 Identities=10% Similarity=0.053 Sum_probs=95.3
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
++..+|...+|+++.++.......-++.+... ..++.....+...+....++||+|........ ...+.+.
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~--~~~e~~~ 74 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAG-------TTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVE--EGIEKYS 74 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccceeccCCCC-------CccCceeeEEEECCeeEEEEECCCCccccchh--ccHHHHH
Confidence 56778888999999998665431111111111 11233444555555567899998865332111 1112221
Q ss_pred -HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcccCceeE
Q 008807 173 -EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 173 -~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
.........+|++++|+|+.++.......+...+ .+.|+++|+||+|+.+... ....+.+++.+.+. ......+
T Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 152 (174)
T cd01895 75 VLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLP--FLDYAPI 152 (174)
T ss_pred HHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcc--cccCCce
Confidence 1122335689999999999876433322222222 4689999999999986531 12222233322111 1123568
Q ss_pred EEeccCCccChhhhHHHHHH
Q 008807 249 HLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~ 268 (553)
+.+||+++.|++++++.+.+
T Consensus 153 ~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 153 VFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred EEEeccCCCCHHHHHHHHHH
Confidence 99999999999999888764
No 70
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.85 E-value=6.6e-09 Score=103.90 Aligned_cols=177 Identities=14% Similarity=0.051 Sum_probs=114.9
Q ss_pred cccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCcccc
Q 008807 88 KDKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 88 ~~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l 167 (553)
..+...++..|.-|+|++++-+..-... .+++-.+-+.+|..+.+.|.-...+..|.||+|.+-=.....+.+
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~k-------v~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l 141 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQK-------VSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHL 141 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCc-------cccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHH
Confidence 4567789999999999999986444322 222223334455666677777778899999998763222223444
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHH---hCCCCEEEEEEcccCCCCCCCh------------hh-HH
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDL---AGANPIILVVTKVDLLPKGTDF------------NC-VG 231 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~---~~~~pvIlVlNKiDLl~~~~~~------------~~-~~ 231 (553)
...+.+-.+.++..||+|+.|+|+++.-..+.+++... ....|-|+|+||+|.+...... .. ..
T Consensus 142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred HHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 55566677888889999999999997543333333222 2568999999999987654211 10 11
Q ss_pred HHHHHHHhhc----------ccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 232 DWVVEATTKK----------KLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 232 ~~~~~~~~~~----------~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
+|..+..... --.+.+||++||++|.|+++|.+.|....+
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 1211111000 012457999999999999999998876543
No 71
>PRK09866 hypothetical protein; Provisional
Probab=98.82 E-value=3.8e-08 Score=108.08 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=76.4
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC----hhhHHHHHHHhC-CCCEEEEEEcccC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN----GSFLARIRDLAG-ANPIILVVTKVDL 220 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~----~s~~~~l~~~~~-~~pvIlVlNKiDL 220 (553)
.+..++||||+.. +. ...+.+.+.+.+.++|+|++|||+.... ..+...+... + ..|+++|+||+|+
T Consensus 230 ~QIIFVDTPGIhk-----~~--~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNE-----AG--QPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAV-GQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCC-----cc--chHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCCCCEEEEEEcccC
Confidence 5778999998631 10 1223334445688999999999997632 2233333332 2 1499999999999
Q ss_pred CCCCC-ChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 221 LPKGT-DFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 221 l~~~~-~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..... ..+.+.+++...+......+..+++|||++|.|++.|++.|.+
T Consensus 302 ~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 302 QDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 74332 2344555544333344556678999999999999999999876
No 72
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.81 E-value=4e-08 Score=92.42 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=90.6
Q ss_pred ccccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
..++..+|..++|++++++....+. ..|.+.--+ +. ...........+.||+|. +
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~----------~~--~~~~~~~~~~~l~Dt~G~------------~ 64 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGF----------NV--ETVTYKNVKFNVWDVGGQ------------D 64 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccccCCccc----------ce--EEEEECCEEEEEEECCCC------------H
Confidence 3578899999999999998764322 223221100 11 122233445788999874 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.+.........++|++|+|+|+++.. ......+...+ .+.|++||+||+|+.... ..+.+.+++. +....
T Consensus 65 ~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~--~~~~~ 141 (168)
T cd04149 65 KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM-KPHEIQEKLG--LTRIR 141 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC-CHHHHHHHcC--CCccC
Confidence 34444455667999999999999853 11222232222 357999999999986432 2333333320 00001
Q ss_pred cCceeEEEeccCCccChhhhHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
-....++.+||++|.|++++++.|.
T Consensus 142 ~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 142 DRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCcEEEEEeeCCCCCChHHHHHHHh
Confidence 1113578899999999999988775
No 73
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.80 E-value=7e-08 Score=104.54 Aligned_cols=157 Identities=18% Similarity=0.112 Sum_probs=96.2
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
+...++..+|..++|++++++..-.....++.+... .+++.+...+...+....++||+|...+ .. ..
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pg-------tTrd~~~~~i~~~g~~v~l~DTaG~~~~----~~-~i 268 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG-------TTRDVVEGDFELNGILIKLLDTAGIREH----AD-FV 268 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC-------cEEEEEEEEEEECCEEEEEeeCCCcccc----hh-HH
Confidence 344588999999999999998766432223322211 2347777777777777889999986321 11 11
Q ss_pred HHHH-HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCce
Q 008807 169 DELR-EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVL 246 (553)
Q Consensus 169 e~~~-~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (553)
+.+. ......++++|++++|+|+++....-...+.... .+.|+++|+||+|+...+ . ..+. ..++ .
T Consensus 269 e~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~~--~---~~~~------~~~~-~ 336 (442)
T TIGR00450 269 ERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKINS--L---EFFV------SSKV-L 336 (442)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCcc--h---hhhh------hhcC-C
Confidence 2211 2233446789999999999875421111222221 368999999999996431 1 1111 1112 3
Q ss_pred eEEEeccCCccChhhhHHHHHHhh
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.++.+||++ .|++++++.|.+.+
T Consensus 337 ~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 337 NSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred ceEEEEEec-CCHHHHHHHHHHHH
Confidence 467899998 58888777776544
No 74
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.79 E-value=4.1e-08 Score=93.72 Aligned_cols=151 Identities=15% Similarity=0.037 Sum_probs=93.2
Q ss_pred ccccccCCCcccccCccccccCCCCC-cccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAP-GYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~-GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
..++..+|..++|+++.++....+.. .|.+ | ..+........+....++||+|. +
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~-----t-------~~~~~~~~~~~~~~~~~~D~~G~------------~ 72 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP-----T-------QHPTSEELAIGNIKFTTFDLGGH------------Q 72 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCC-----c-------cccceEEEEECCEEEEEEECCCC------------H
Confidence 35788999999999999987654321 1111 1 12223333344455678999874 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhh--
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTK-- 240 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~-- 240 (553)
.++.........+|.+++|+|++++.. .....+..+. .+.|+++|+||+|+.. ....+.+.+.+- +..
T Consensus 73 ~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~-~~~~~~i~~~l~--l~~~~ 149 (184)
T smart00178 73 QARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY-AASEDELRYALG--LTNTT 149 (184)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC-CCCHHHHHHHcC--CCccc
Confidence 233334455679999999999988631 1111222221 3689999999999853 223333433320 000
Q ss_pred -----cccCceeEEEeccCCccChhhhHHHHHH
Q 008807 241 -----KKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 241 -----~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+...++.+||+++.|++++++.|.+
T Consensus 150 ~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 150 GSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 1123456899999999999999988764
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.79 E-value=5.5e-08 Score=90.14 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=88.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec---CCccEEEecCCCCCccCCCccccHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL---SHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l---~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
++..+|...+|+.++++....+..-|.......+. .+.....+... .....++||+|. +
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~------~~~~~~~~~~~~~~~~~l~i~Dt~G~------------~ 63 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTG------CDFVVKEVPVDTDNTVELFIFDSAGQ------------E 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceE------EEEEEEEEEeCCCCEEEEEEEECCCH------------H
Confidence 45678899999999998765431112111100000 02222222221 123568898762 3
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCCCCEEEEEEcccCCCCCCChh-hHHHHHHHHHhhccc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGANPIILVVTKVDLLPKGTDFN-CVGDWVVEATTKKKL 243 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~-~~~~~~~~~~~~~~l 243 (553)
.+.........++|++++|+|+++.. ..++..+.....+.|+++|+||+|+.+...... ....+ ....
T Consensus 64 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~ 137 (164)
T cd04101 64 LYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAF------AQAN 137 (164)
T ss_pred HHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHH------HHHc
Confidence 44444566678999999999998753 122333333223579999999999975532111 11111 1222
Q ss_pred CceeEEEeccCCccChhhhHHHHHH
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
+ ..++.+||+++.|++++++.|.+
T Consensus 138 ~-~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 138 Q-LKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred C-CeEEEEeCCCCCChHHHHHHHHH
Confidence 3 35789999999999999988765
No 76
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.78 E-value=5.3e-08 Score=105.51 Aligned_cols=187 Identities=11% Similarity=0.086 Sum_probs=108.3
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...++..+|..++|+++++++.-....-.+.+.. ..+++.+...+...+....++||+|....... ....+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~-------gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~--~~~~e 242 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIA-------GTTRDSIDTPFERDGQKYTLIDTAGIRRKGKV--TEGVE 242 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCC-------CceEEEEEEEEEECCeeEEEEECCCCCCCcch--hhHHH
Confidence 4568999999999999999875432111111111 11224444444455556789999986422111 01122
Q ss_pred HHH-HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCce
Q 008807 170 ELR-EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVL 246 (553)
Q Consensus 170 ~~~-~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (553)
.+. ......+..+|++|+|+|+.+........+...+ .++|+++|+||+|+.+... ...+.+.+...+ ..+...
T Consensus 243 ~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l--~~~~~~ 319 (435)
T PRK00093 243 KYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKT-MEEFKKELRRRL--PFLDYA 319 (435)
T ss_pred HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHH-HHHHHHHHHHhc--ccccCC
Confidence 221 2223346789999999999876443333333332 3689999999999984321 222222221111 123345
Q ss_pred eEEEeccCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhh
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.++++||+++.|++++++.+.+.......- + +++.+|.++..
T Consensus 320 ~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~------i-~t~~ln~~l~~ 361 (435)
T PRK00093 320 PIVFISALTGQGVDKLLEAIDEAYENANRR------I-STSVLNRVLEE 361 (435)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHcCc------C-ChHHHHHHHHH
Confidence 789999999999999998887644322110 1 34566777654
No 77
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.78 E-value=4.5e-08 Score=90.34 Aligned_cols=145 Identities=11% Similarity=0.033 Sum_probs=86.2
Q ss_pred cccCCCcccccCccccccCCCC---CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDA---PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~---~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
+..+|..++|++++++...... ..|.+. . ..........+....++||+|. +.
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t-----~-------g~~~~~~~~~~~~~~l~Dt~G~------------~~ 57 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQIIVPT-----V-------GFNVESFEKGNLSFTAFDMSGQ------------GK 57 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcceecCc-----c-------ccceEEEEECCEEEEEEECCCC------------Hh
Confidence 4567889999999998766431 122211 1 1111222333445678999874 23
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHH---h-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDL---A-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~---~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
++.........+|.+++|+|+++... ..+..+... . .+.|+++|+||+|+.... ....+.+. +...
T Consensus 58 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~----l~~~ 132 (162)
T cd04157 58 YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-TAVKITQL----LGLE 132 (162)
T ss_pred hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-CHHHHHHH----hCCc
Confidence 44444555678999999999998542 122222221 1 258999999999997543 12222111 1111
Q ss_pred cc--CceeEEEeccCCccChhhhHHHHH
Q 008807 242 KL--NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 242 ~l--~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
.. ....++.+||++|.|++++++.|.
T Consensus 133 ~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 133 NIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred cccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 11 113478899999999999988875
No 78
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.78 E-value=6.1e-08 Score=91.19 Aligned_cols=151 Identities=12% Similarity=0.040 Sum_probs=89.7
Q ss_pred cccccccCCCcccccCccccccCCCCC-cccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAP-GYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~-GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
...++..+|..++|++++++....... .|.+ |. ...............++||+|.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~-----t~-------g~~~~~~~~~~~~l~l~D~~G~------------ 68 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISP-----TL-------GFQIKTLEYEGYKLNIWDVGGQ------------ 68 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCC-----cc-------ccceEEEEECCEEEEEEECCCC------------
Confidence 445788999999999999976653311 1111 11 1111222233345678999874
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHH-----hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDL-----AGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~-----~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
+.++.........+|.+++|+|+.+... .....+..+ ..+.|+++|+||+|+.... ....+.+++.. ...
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~--~~~ 145 (173)
T cd04154 69 KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL-SEEEIREALEL--DKI 145 (173)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-CHHHHHHHhCc--ccc
Confidence 2333334455678999999999987531 111112221 1468999999999996543 23333333210 000
Q ss_pred ccCceeEEEeccCCccChhhhHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
......++.+||++|.|++++++.|.
T Consensus 146 ~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 146 SSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred CCCceEEEeccCCCCcCHHHHHHHHh
Confidence 11224689999999999999988764
No 79
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.77 E-value=1.6e-08 Score=101.74 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=101.7
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCc--ccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQ--FVS 167 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~--~~l 167 (553)
.+..+-+++..++|++++|.+.+..+| -+-+=.|.|+ .+.-+-.+...|.. +-+||+.|.|.... .-+
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL-------~P~iG~v~yddf~q--~tVADiPGiI~GAh~nkGl 264 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTL-------RPHIGTVNYDDFSQ--ITVADIPGIIEGAHMNKGL 264 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCC-cccccceeee-------ccccceeeccccce--eEeccCccccccccccCcc
Confidence 344888999999999999999999888 3444458888 55556666655542 34455566665421 122
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCC---C--hh---hHHHHH---HHhCCCCEEEEEEcccCCCCCCChhhHHHHHHH
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDF---N--GS---FLARIR---DLAGANPIILVVTKVDLLPKGTDFNCVGDWVVE 236 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~---~--~s---~~~~l~---~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~ 236 (553)
--.| |.+ ++.+..+++|||++.+ + .. +..++. +-+.++|.++|+||+|+...+. +.+.+.
T Consensus 265 G~~F---LrH-iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L--- 335 (366)
T KOG1489|consen 265 GYKF---LRH-IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSL--- 335 (366)
T ss_pred cHHH---HHH-HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHHHH---
Confidence 3345 444 4578899999999876 2 11 122222 1235789999999999863321 112222
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+.+.-..|+.+||+++.|+++|++.|+.
T Consensus 336 ---~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 336 ---AKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred ---HHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 12233246899999999999999888764
No 80
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.77 E-value=3.4e-08 Score=91.32 Aligned_cols=145 Identities=11% Similarity=0.033 Sum_probs=85.1
Q ss_pred cccCCCcccccCccccccCC-CCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSES-DAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~-~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
+..+|..++|+.++++.... ....|.+ |. ..........+....++||+|. +.+.
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~~~-----t~-------~~~~~~~~~~~~~~~i~Dt~G~------------~~~~ 57 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTTIP-----TI-------GFNVETVTYKNLKFQVWDLGGQ------------TSIR 57 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCcCC-----cc-------CcCeEEEEECCEEEEEEECCCC------------HHHH
Confidence 56678889999999987632 1122211 11 0111122233345678999874 2344
Q ss_pred HHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhccc--
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKL-- 243 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l-- 243 (553)
......+..+|++|+|+|+++... .....+..+. .+.|+++|+||+|+.... ....+.+. +.....
T Consensus 58 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-~~~~i~~~----~~~~~~~~ 132 (158)
T cd04151 58 PYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-SEAEISEK----LGLSELKD 132 (158)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-CHHHHHHH----hCccccCC
Confidence 444455678999999999987531 1112222111 368999999999986432 12222111 111100
Q ss_pred CceeEEEeccCCccChhhhHHHHH
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
....++.+||+++.|++++++.|.
T Consensus 133 ~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 133 RTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CcEEEEEeeccCCCCHHHHHHHHh
Confidence 113589999999999999988875
No 81
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.77 E-value=9e-09 Score=104.53 Aligned_cols=58 Identities=38% Similarity=0.364 Sum_probs=44.1
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.++++|.||||||||+|+|.+. ....+|+.|+||++.+.-.....+ ..++||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~-------------~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ-------------KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-------------cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 5889999999999999999975 123578999999986543322223 358999999754
No 82
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.76 E-value=1e-07 Score=88.76 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=89.3
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|..++|+++++++.-... +.|.+. . ..+..-......+. ...++||+|.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t-----~-----~~~~~~~~~~~~~~~~~~~~~D~~g~------------ 59 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKAT-----I-----GADFLTKEVTVDDKLVTLQIWDTAGQ------------ 59 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCc-----c-----ceEEEEEEEEECCEEEEEEEEeCCCh------------
Confidence 45678899999999987654321 111111 0 01222233333322 2357899763
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhC-----CCCEEEEEEcccCCCC-CCChhhHHHHHHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAG-----ANPIILVVTKVDLLPK-GTDFNCVGDWVVEA 237 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~-----~~pvIlVlNKiDLl~~-~~~~~~~~~~~~~~ 237 (553)
+.+.......++.+|.+|+++|+.+... .+...+..... +.|+++|+||+|+..+ ......+..+.
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~--- 136 (172)
T cd01862 60 ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWC--- 136 (172)
T ss_pred HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHH---
Confidence 2344444556778999999999987542 22223332222 6799999999999843 22233333332
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+...++.+||++|.|++++++.+.+.
T Consensus 137 ---~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 137 ---QSNGNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred ---HHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 22333578999999999999998887653
No 83
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.76 E-value=3.3e-08 Score=106.11 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=98.4
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec-CCccEEEecCCCCCccCCCc--ccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL-SHGHMITAVGGNGGYAGGKQ--FVS 167 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~~~~~~~dTaG~vgf~~~~~--~~l 167 (553)
...|..+|..++|++++|+......+- +.+-.|.|+ ++....+... ...+.++||+|.. .... .-+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl-------~PnlG~v~~~~~~~~~laD~PGli---ega~~~~gL 226 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTL-------VPNLGVVETDDGRSFVMADIPGLI---EGASEGVGL 226 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCccee-------ceEEEEEEEeCCceEEEEECCCCc---ccccccchH
Confidence 348999999999999999987755432 222335565 6666666554 5668899998752 2111 011
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCC-----hh---hHHHHHHH---hCCCCEEEEEEcccCCCCCCChhhHHHHHHH
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFN-----GS---FLARIRDL---AGANPIILVVTKVDLLPKGTDFNCVGDWVVE 236 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s---~~~~l~~~---~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~ 236 (553)
...| +.+ ++.+++||||+|+++.+ .. +..++... ...+|.++|+||+||... ...+.++.
T Consensus 227 g~~f---Lrh-ier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~---~e~l~~l~-- 297 (424)
T PRK12297 227 GHQF---LRH-IERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA---EENLEEFK-- 297 (424)
T ss_pred HHHH---HHH-HhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC---HHHHHHHH--
Confidence 2233 333 45789999999997541 11 22233322 136899999999997322 12222221
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
+.++ ..++.+||+++.|+++|++.|.+.+
T Consensus 298 ----~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 298 ----EKLG-PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred ----HHhC-CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1222 4688999999999999999887654
No 84
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.73 E-value=1e-07 Score=93.40 Aligned_cols=150 Identities=12% Similarity=0.090 Sum_probs=89.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC---CccEEEecCCCCCccCCCccccHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS---HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~---~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
++..+|..++|++++++....+. |.. ..-.|. .-+...++....+ ....+.||+|. +
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~~~-~~~~T~-----~~d~~~~~i~~~~~~~~~~~i~Dt~G~------------~ 61 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--FGK-SYKQTI-----GLDFFSKRVTLPGNLNVTLQVWDIGGQ------------S 61 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCC-CCCCce-----eEEEEEEEEEeCCCCEEEEEEEECCCc------------H
Confidence 45678999999999998775321 111 100010 0134444554432 23468899763 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC----CCCEEEEEEcccCCCCC-CChhhHHHHHHHHHh
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG----ANPIILVVTKVDLLPKG-TDFNCVGDWVVEATT 239 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~----~~pvIlVlNKiDLl~~~-~~~~~~~~~~~~~~~ 239 (553)
.+.........++|+||+|+|+++.. ..+...+..... +.|+++|.||+||.... ........+.
T Consensus 62 ~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~----- 136 (215)
T cd04109 62 IGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA----- 136 (215)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH-----
Confidence 33333444567999999999998753 123333433321 24689999999997432 2222222221
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ...+.+||++|.|++++++.|.+.
T Consensus 137 -~~~~-~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 137 -QANG-MESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred -HHcC-CEEEEEECCCCCCHHHHHHHHHHH
Confidence 1223 356889999999999999888754
No 85
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.71 E-value=8.4e-08 Score=90.56 Aligned_cols=150 Identities=11% Similarity=0.011 Sum_probs=89.3
Q ss_pred ccccccCCCcccccCccccccCCC-CCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESD-APGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~-~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
..++...|..++|++++++..... ..+|.+ |. ...............++||+|. +
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~-----t~-------~~~~~~~~~~~~~~~l~D~~G~------------~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSP-----TI-------GSNVEEIVYKNIRFLMWDIGGQ------------E 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCC-----cc-------ccceEEEEECCeEEEEEECCCC------------H
Confidence 347889999999999999877532 222211 11 1111233333445788999874 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.+.+......+.+|++++|+|+++.+. .....+..+. .+.|+++|+||+|+.... ..+.+.+.+.. .....
T Consensus 71 ~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~-~~~~i~~~l~~-~~~~~ 148 (174)
T cd04153 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM-TPAEISESLGL-TSIRD 148 (174)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC-CHHHHHHHhCc-ccccC
Confidence 344444455678999999999987542 1112222221 247999999999986432 22222221100 00011
Q ss_pred cCceeEEEeccCCccChhhhHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
.+ ..++.+||+++.|++++++.|.
T Consensus 149 ~~-~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 149 HT-WHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred Cc-eEEEecccCCCCCHHHHHHHHh
Confidence 12 3578999999999999988775
No 86
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.71 E-value=9.8e-08 Score=109.58 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=102.8
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCcccc-HH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVS-AD 169 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l-~e 169 (553)
..++..+|..++|++++++..-......+.+.... +++.+.......+....++||+|... ...... .+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt-------T~d~~~~~~~~~~~~~~liDTaG~~~---~~~~~~~~e 519 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT-------TRDPVDEIVEIDGEDWLFIDTAGIKR---RQHKLTGAE 519 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC-------CcCcceeEEEECCCEEEEEECCCccc---CcccchhHH
Confidence 45889999999999999987765443333322222 23666566666666778999988531 111111 22
Q ss_pred HHHH-HHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCce
Q 008807 170 ELRE-KLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVL 246 (553)
Q Consensus 170 ~~~~-~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (553)
.+.. ....+++.+|++++|+|+++........+...+ .++|+++|+||+||.+... ...+...+... ...+...
T Consensus 520 ~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~-~~~~~~~~~~~--l~~~~~~ 596 (712)
T PRK09518 520 YYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFR-RQRLERLWKTE--FDRVTWA 596 (712)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhH-HHHHHHHHHHh--ccCCCCC
Confidence 2321 122345789999999999875432222222111 4689999999999975431 11121111110 1223445
Q ss_pred eEEEeccCCccChhhhHHHHHHhhc
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
.++.+||++|.|+++|++.+.+...
T Consensus 597 ~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 597 RRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999877544
No 87
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.71 E-value=4.9e-08 Score=91.24 Aligned_cols=153 Identities=17% Similarity=0.133 Sum_probs=87.2
Q ss_pred CCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec-CCccEEEecCCCCCccCCCccccHHHHHHHH
Q 008807 97 AVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL-SHGHMITAVGGNGGYAGGKQFVSADELREKL 175 (553)
Q Consensus 97 ~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l 175 (553)
.|...+|++++++....... .+.+..+.|. ++........ +....++||+|....... .+.+....
T Consensus 2 iG~~~~GKStll~~l~~~~~-~~~~~~~~t~-------~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-----~~~~~~~~ 68 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKP-KVANYPFTTL-------EPNLGVVEVPDGARIQVADIPGLIEGASE-----GRGLGNQF 68 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCc-cccCCCceee-------cCcceEEEcCCCCeEEEEeccccchhhhc-----CCCccHHH
Confidence 57788999999987654322 1222222222 3333444444 566789999875211100 01111122
Q ss_pred HHhhhcccEEEEEcccCCCC-----hh------hHHHHHHH--------hCCCCEEEEEEcccCCCCCCChhhHHHHHHH
Q 008807 176 SHLRREKALIVKLVDIVDFN-----GS------FLARIRDL--------AGANPIILVVTKVDLLPKGTDFNCVGDWVVE 236 (553)
Q Consensus 176 ~~~~~~adlIl~VVD~~d~~-----~s------~~~~l~~~--------~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~ 236 (553)
...+..+|+|++|+|+.+.. .. +...+... ...+|+++|+||+|+..... ...+...
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~ 144 (176)
T cd01881 69 LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----LEEELVR 144 (176)
T ss_pred HHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----HHHHHHH
Confidence 23355799999999998863 11 12222211 13689999999999975432 1122100
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
. ........++.+||+++.|++++++.+..
T Consensus 145 ~--~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 145 E--LALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred H--HhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 0 11122256899999999999999887753
No 88
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.70 E-value=2e-07 Score=86.94 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=89.5
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|...+|++++++...... .-|.+..- -+.....+.... ....+.||+|.
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~----------~~~~~~~~~~~~~~~~~~l~Dt~g~------------ 60 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVG----------IDFKVKTVFRNDKRVKLQIWDTAGQ------------ 60 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee----------eEEEEEEEEECCEEEEEEEEECCCh------------
Confidence 46678899999999998765432 11221100 011112222222 23568899763
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~ 241 (553)
+.+........+.+|.+++|+|+.+.. ..+...+.... ...|+++|+||+||.+.... .....++. .
T Consensus 61 ~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------~ 134 (165)
T cd01865 61 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLA------D 134 (165)
T ss_pred HHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHH------H
Confidence 234444455577999999999998753 12333333322 35789999999999754321 12222221 2
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.++ ..++.+||+++.|+++|++.|.+.
T Consensus 135 ~~~-~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 135 QLG-FEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred HcC-CEEEEEECCCCCCHHHHHHHHHHH
Confidence 233 357899999999999999988654
No 89
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.70 E-value=1.8e-07 Score=86.33 Aligned_cols=147 Identities=19% Similarity=0.172 Sum_probs=88.6
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEec----CCccEEEecCCCCCccCCCccc
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLL----SHGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l----~~~~~~~dTaG~vgf~~~~~~~ 166 (553)
++..+|..++|+.++++..-... ..|.+. . ..+......... .....++||+|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t-----~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------- 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKT-----I-----GVDFLEKQIFLRQSDEDVRLMLWDTAGQ---------- 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----E-----EEEEEEEEEEEcCCCCEEEEEEeeCCch----------
Confidence 35677888999999998654321 111111 0 002222222222 124568899762
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
+.+..........+|.+++|+|+.+.. ..+...+.....+.|+++|+||+|+..... ..+....+.
T Consensus 62 --~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~------ 133 (162)
T cd04106 62 --EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALA------ 133 (162)
T ss_pred --HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHH------
Confidence 345554555677999999999998754 122233333335789999999999976432 122222221
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHH
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..++ ..++.+||+++.|++++++.|.+
T Consensus 134 ~~~~-~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 134 KRLQ-LPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHcC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 2233 36789999999999999888753
No 90
>PRK04213 GTP-binding protein; Provisional
Probab=98.70 E-value=1.3e-07 Score=91.26 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=90.3
Q ss_pred ccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
..++..+|..++|++++++...... .++.+ .. ...+..+.. ....++||+|. ++....+....
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~---~~---------t~~~~~~~~--~~~~l~Dt~G~-~~~~~~~~~~~ 73 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP---GV---------TRKPNHYDW--GDFILTDLPGF-GFMSGVPKEVQ 73 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCC---ce---------eeCceEEee--cceEEEeCCcc-ccccccCHHHH
Confidence 4578899999999999998775421 11111 00 111222222 25789999985 33332222224
Q ss_pred HHHHHHHHHh----hhcccEEEEEcccCCCCh---hh--------HHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHH
Q 008807 169 DELREKLSHL----RREKALIVKLVDIVDFNG---SF--------LARIRDLA--GANPIILVVTKVDLLPKGTDFNCVG 231 (553)
Q Consensus 169 e~~~~~l~~~----~~~adlIl~VVD~~d~~~---s~--------~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~ 231 (553)
+.++..+... ...+++|++|+|..++.. .+ ...+...+ .+.|+++|+||+|+.... .....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~ 151 (201)
T PRK04213 74 EKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLD 151 (201)
T ss_pred HHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHH
Confidence 5565544333 235689999999875421 11 01112111 368999999999986543 11222
Q ss_pred HHHHHHHhhc-cc-C-ceeEEEeccCCccChhhhHHHHHHhh
Q 008807 232 DWVVEATTKK-KL-N-VLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 232 ~~~~~~~~~~-~l-~-~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
++. +.+... .. . ...++.+||++| |++++++.|.+..
T Consensus 152 ~~~-~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 152 EIA-ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred HHH-HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 221 111100 00 0 024789999999 9999999887644
No 91
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.70 E-value=9.3e-08 Score=88.95 Aligned_cols=146 Identities=14% Similarity=0.090 Sum_probs=84.8
Q ss_pred ccccCCCcccccCccccccCCC-CCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESD-APGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~-~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
++..+|...+|+.+++...... ...|.+. . ..-...+........+.||+|. +.+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~~~pt-----~-------g~~~~~~~~~~~~~~l~D~~G~------------~~~ 57 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPT-----I-------GFNVETVEYKNISFTVWDVGGQ------------DKI 57 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCC-----C-------CcceEEEEECCEEEEEEECCCC------------HhH
Confidence 3556778888888888776322 1222221 1 0111223333345678999874 234
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhccc-
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKL- 243 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l- 243 (553)
.........++|.+|+|+|+++.. ......+..+. ...|+++|+||+||..... ...+.+. +....+
T Consensus 58 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~----~~~~~~~ 132 (159)
T cd04150 58 RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS-AAEVTDK----LGLHSLR 132 (159)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC-HHHHHHH----hCccccC
Confidence 444556678999999999998753 11222222222 3579999999999854321 2221111 111111
Q ss_pred -CceeEEEeccCCccChhhhHHHHH
Q 008807 244 -NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 244 -~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
....++.+||++|.|++++++.|.
T Consensus 133 ~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 133 NRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 112466899999999999988775
No 92
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.69 E-value=1.2e-07 Score=88.90 Aligned_cols=149 Identities=14% Similarity=0.069 Sum_probs=87.4
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELRE 173 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~ 173 (553)
+..+|..++|+.+++..........+. .|. ..-.......+....++||+|.. .++.
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~~~~----~T~-------~~~~~~~~~~~~~i~l~Dt~G~~------------~~~~ 58 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFMQPI----PTI-------GFNVETVEYKNLKFTIWDVGGKH------------KLRP 58 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCcC----CcC-------ceeEEEEEECCEEEEEEECCCCh------------hcch
Confidence 456788999999998776543221111 111 11122333334456789998742 2223
Q ss_pred HHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhccc---
Q 008807 174 KLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKL--- 243 (553)
Q Consensus 174 ~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l--- 243 (553)
........+|.+++|+|+++.. ......+..+. .+.|+++|.||+||... ...+.+.+++ ....+
T Consensus 59 ~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~----~~~~~~~~ 133 (169)
T cd04158 59 LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA-LSVEEMTELL----SLHKLCCG 133 (169)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-CCHHHHHHHh----CCccccCC
Confidence 3344457899999999998853 11122222221 24799999999998643 2233333332 11111
Q ss_pred CceeEEEeccCCccChhhhHHHHHHhh
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
....++.+||++|.|++++++.|.+.+
T Consensus 134 ~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 134 RSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred CcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 112466789999999999999887643
No 93
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.69 E-value=1.3e-07 Score=86.93 Aligned_cols=146 Identities=16% Similarity=0.108 Sum_probs=88.0
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|....|++++++....+. ..|.+ | ..+.....+...+. ...++||+|..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~-----t------~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------- 60 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDEYDP-----T------IEDSYRKQVVIDGETCLLDILDTAGQE----------- 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCCcCC-----c------chheEEEEEEECCEEEEEEEEECCCCc-----------
Confidence 46678899999999997665321 11111 0 11233333433332 24578998742
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
.+..........+|.+++|+|+.+.. ..+...+.... .+.|+++|+||+|+...........++. .
T Consensus 61 -~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~------~ 133 (162)
T cd04138 61 -EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA------K 133 (162)
T ss_pred -chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH------H
Confidence 23333444566889999999988743 12233333332 3679999999999976433222222321 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+ ..++.+||+++.|++++++.|.+
T Consensus 134 ~~~-~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 134 SYG-IPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred HhC-CeEEEecCCCCCCHHHHHHHHHH
Confidence 223 35789999999999999988764
No 94
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.69 E-value=1.4e-07 Score=91.34 Aligned_cols=109 Identities=13% Similarity=-0.005 Sum_probs=64.7
Q ss_pred EEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCC-EEEEEE
Q 008807 140 RCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANP-IILVVT 216 (553)
Q Consensus 140 Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~p-vIlVlN 216 (553)
.+...+++..++||+|. ..|...+...+..+|++++|||+.+.......++...+ .+.| +|+|+|
T Consensus 59 ~~~~~~~~i~~iDtPG~------------~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 59 EYETANRHYAHVDCPGH------------ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred EecCCCeEEEEEECcCH------------HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEe
Confidence 33344556789999874 24555555667789999999999864322222222221 2455 778999
Q ss_pred cccCCCCCCChhhHHHHHHHHHhhccc--CceeEEEeccCCccChh
Q 008807 217 KVDLLPKGTDFNCVGDWVVEATTKKKL--NVLSVHLTSSKSLAGIV 260 (553)
Q Consensus 217 KiDLl~~~~~~~~~~~~~~~~~~~~~l--~~~~vi~iSAk~g~gi~ 260 (553)
|+|+..+....+.+.+.+.+.+..-++ ....++++||++|.++.
T Consensus 127 K~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 127 KADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 999974332122233333333322222 12468999999998864
No 95
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.68 E-value=1.1e-07 Score=90.79 Aligned_cols=153 Identities=16% Similarity=0.057 Sum_probs=93.0
Q ss_pred ccccccCCCcccccCccccccCCCCCc-ccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPG-YVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~G-Y~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
..++..+|..++|++++++....+... |.+ |. .+.+..+...+....++||+|. +
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~-----T~-------~~~~~~i~~~~~~~~l~D~~G~------------~ 74 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVP-----TL-------HPTSEELTIGNIKFKTFDLGGH------------E 74 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCC-----cc-------CcceEEEEECCEEEEEEECCCC------------H
Confidence 347788999999999999876543321 211 11 2334455555556678999763 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHh---
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATT--- 239 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~--- 239 (553)
.++.........+|.+++|+|+++... .....+..+. .+.|+++|+||+|+... .....+.+++.....
T Consensus 75 ~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~ 153 (190)
T cd00879 75 QARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA-VSEEELRQALGLYGTTTG 153 (190)
T ss_pred HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-cCHHHHHHHhCccccccc
Confidence 233333445678999999999987531 1112222221 35899999999998643 233334443210000
Q ss_pred ------hcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 240 ------KKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 240 ------~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
........++.+||+++.|++++++.|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 154 KGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred ccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 00011135789999999999999988865
No 96
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.67 E-value=2.5e-08 Score=106.21 Aligned_cols=57 Identities=35% Similarity=0.322 Sum_probs=44.4
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee-cC--CcEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF-LG--GGKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~-~~--~~~liDTPGi~~~ 344 (553)
+|.|||.||||||||||+|.+. ++.+|+.|+||+.++.-... .+ ...++||||+...
T Consensus 161 dValVG~PNaGKSTLln~Lt~~--------------k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~ 220 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAA--------------KPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEG 220 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCC--------------cccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcccc
Confidence 6999999999999999999863 34688999999986543321 22 2579999999754
No 97
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.67 E-value=1.9e-07 Score=89.66 Aligned_cols=112 Identities=14% Similarity=0.161 Sum_probs=67.6
Q ss_pred CCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhH-H--HHHHHhCCCCEEEEEEcccCC
Q 008807 145 SHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFL-A--RIRDLAGANPIILVVTKVDLL 221 (553)
Q Consensus 145 ~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~-~--~l~~~~~~~pvIlVlNKiDLl 221 (553)
.....++||+|.. .|..........+|.+++|+|+.+...... + .+... .+.|+++|+||+|+.
T Consensus 67 ~~~~~i~DtpG~~------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~-~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 67 NLQITLVDCPGHA------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI-LCKKLIVVLNKIDLI 133 (192)
T ss_pred CceEEEEECCCcH------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH-cCCCEEEEEECcccC
Confidence 3456889998741 233333344567899999999987432111 1 11222 357999999999997
Q ss_pred CCCCCh---hhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 222 PKGTDF---NCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 222 ~~~~~~---~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...... +.+.+++...+.........++.+||+++.|+++|++.|...
T Consensus 134 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 134 PEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 543211 111222111111111222568999999999999999988764
No 98
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.66 E-value=2.7e-07 Score=85.11 Aligned_cols=147 Identities=20% Similarity=0.154 Sum_probs=88.1
Q ss_pred ccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++...|..++|++++++..-.. ...|.+. ...+.........+ ....++||+|.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~D~~G~------------ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQAT----------IGIDFLSKTMYLEDKTVRLQLWDTAGQ------------ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCc----------eeeeEEEEEEEECCEEEEEEEEECCCc------------
Confidence 4567789999999999765322 1111110 01133333443332 23568999863
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC-CCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG-ANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~-~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~ 241 (553)
+.+.......+..+|++++|+|+.++. ..+...+....+ +.|+++|+||+|+..... ..+..... . .
T Consensus 60 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~----~--~ 133 (161)
T cd01861 60 ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKK----A--K 133 (161)
T ss_pred HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHH----H--H
Confidence 234444555577899999999998753 122223322222 489999999999964322 11111211 1 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+ ..++.+||+++.|++++++.|.+
T Consensus 134 ~~~-~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 134 ELN-AMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HhC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence 223 45789999999999999988864
No 99
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.66 E-value=1.2e-07 Score=92.41 Aligned_cols=119 Identities=16% Similarity=0.122 Sum_probs=70.4
Q ss_pred CccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHH---HHHHhCC
Q 008807 132 QFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLAR---IRDLAGA 208 (553)
Q Consensus 132 ~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~---l~~~~~~ 208 (553)
-+++.....+...+....++||+|. +.|...+...+..+|++|+|+|+.+........ +....+.
T Consensus 63 ~T~~~~~~~~~~~~~~~~liDTpG~------------~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~ 130 (208)
T cd04166 63 ITIDVAYRYFSTPKRKFIIADTPGH------------EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGI 130 (208)
T ss_pred cCeecceeEEecCCceEEEEECCcH------------HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCC
Confidence 3456667777777778899999874 233333344567899999999998754222222 2222233
Q ss_pred CCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcccCceeEEEeccCCccChhhh
Q 008807 209 NPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGV 262 (553)
Q Consensus 209 ~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~L 262 (553)
.++|+|+||+|+...... ...+..-+.+.+...++....++.+||+++.|+++.
T Consensus 131 ~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 131 RHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred CcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 457889999999753211 111111111111112222245899999999999764
No 100
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.66 E-value=1.4e-07 Score=108.35 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=99.0
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCc-cccHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQ-FVSADE 170 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~-~~l~e~ 170 (553)
.+++.+|..++||+++++....... .+.+-. +.+.+...+.+...++...++||+|+..|..... ....+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~p-------GvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~ 75 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWA-------GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ 75 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCC-------CceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHH
Confidence 3688899999999999987754321 221111 1112444455555556778999999865543211 122233
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhh--HHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSF--LARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~--~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
+... .....++|+|++|+|+++.+... ...+.+ .+.|+++|+||+|+..+.......+++ .+.++ .++
T Consensus 76 i~~~-~l~~~~aD~vI~VvDat~ler~l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L------~~~LG-~pV 145 (772)
T PRK09554 76 IACH-YILSGDADLLINVVDASNLERNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDAL------SARLG-CPV 145 (772)
T ss_pred HHHH-HHhccCCCEEEEEecCCcchhhHHHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHH------HHHhC-CCE
Confidence 3221 11235789999999998865332 233333 368999999999987543221112221 23344 468
Q ss_pred EEeccCCccChhhhHHHHHHhh
Q 008807 249 HLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
+.+||+++.|+++|.+.+.+..
T Consensus 146 vpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 146 IPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEEeecCCCHHHHHHHHHHhh
Confidence 9999999999999998887643
No 101
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.66 E-value=2.7e-07 Score=89.36 Aligned_cols=156 Identities=17% Similarity=0.121 Sum_probs=88.9
Q ss_pred ccccCCCcccccCccccccCCCC-C-cccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA-P-GYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~-~-GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|..+.|++++++..-... + .|.+... .+..+.-....+ ....++||+|...|.. ...
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~----------~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~----~~~ 67 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEH----------RRLYRPAVVLSGRVYDLHILDVPNMQRYPG----TAG 67 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccc----------cccceeEEEECCEEEEEEEEeCCCcccCCc----cch
Confidence 45678899999999997643211 1 1211100 011212222222 2345899998754431 122
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh----CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA----GANPIILVVTKVDLLPKGTD-FNCVGDWVVEAT 238 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~ 238 (553)
+.+.......+.++|++|+|+|+.+... .+...+.... .+.|+++|.||+|+...... .....++.
T Consensus 68 ~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---- 143 (198)
T cd04142 68 QEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---- 143 (198)
T ss_pred hHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH----
Confidence 2222223334578999999999987531 2223333321 35799999999999654221 11122221
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+..+ ..++.+||++|.|+++|++.+.+
T Consensus 144 -~~~~~-~~~~e~Sak~g~~v~~lf~~i~~ 171 (198)
T cd04142 144 -RKSWK-CGYLECSAKYNWHILLLFKELLI 171 (198)
T ss_pred -HHhcC-CcEEEecCCCCCCHHHHHHHHHH
Confidence 11223 45789999999999999988765
No 102
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.66 E-value=3.5e-07 Score=85.04 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=90.8
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++..+|...+|+++++++.-. |-+....-.+. ..+.....+...+. ...++||+|. +
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~---~~~~~~~~~t~-----~~~~~~~~~~~~~~~~~l~i~D~~G~------------~ 63 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKS---GTFSERQGNTI-----GVDFTMKTLEIEGKRVKLQIWDTAGQ------------E 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhh---CCCcccCCCcc-----ceEEEEEEEEECCEEEEEEEEECCCh------------H
Confidence 4677889999999999987532 11111100000 00223333443332 3468899762 3
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~ 242 (553)
.+..........+|++++|+|+.+... .++..+.... .+.|+++|+||+|+..... ......++. +.
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~ 137 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLA------EK 137 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH------HH
Confidence 455445556678999999999987531 2333333321 2578999999999975432 112222221 22
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+...++.+||++|.|++++++.+.+
T Consensus 138 ~~~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 138 NGMLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred cCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 33346789999999999999988764
No 103
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.66 E-value=1.8e-07 Score=86.44 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=89.7
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|...+|+.+++++.-... +. .. .....++.....|...++ ...++||+|.. .
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~--~~-~~------~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------~ 62 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSY--FV-TD------YDPTIEDSYTKQCEIDGQWAILDILDTAGQE------------E 62 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CC-cc------cCCCccceEEEEEEECCEEEEEEEEECCCCc------------c
Confidence 56788999999999987643221 11 10 011112444555655443 35678998742 2
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKK 242 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~ 242 (553)
+..........+|.+++|+|+.+.. ..+...+.... .+.|+++|+||+|+..... ......++. ..
T Consensus 63 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~------~~ 136 (164)
T cd04145 63 FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA------RK 136 (164)
T ss_pred hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH------HH
Confidence 2333444566899999999998753 12223333322 3579999999999965432 112222221 12
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+ ..++.+||+++.|++++++.|.+
T Consensus 137 ~~-~~~~~~Sa~~~~~i~~l~~~l~~ 161 (164)
T cd04145 137 LK-IPYIETSAKDRLNVDKAFHDLVR 161 (164)
T ss_pred cC-CcEEEeeCCCCCCHHHHHHHHHH
Confidence 23 35789999999999999988765
No 104
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.66 E-value=3.4e-07 Score=84.98 Aligned_cols=148 Identities=18% Similarity=0.072 Sum_probs=90.4
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|..++|++++++...... .-|.+.. ..+.........++ ...++||+|.
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~l~D~~g~----------- 62 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTI----------GVEFATRSIQIDGKTIKAQIWDTAGQ----------- 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----------ceEEEEEEEEECCEEEEEEEEeCCCh-----------
Confidence 367788999999999999875331 1111110 01333444444332 3568899763
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhC-CCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAG-ANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~-~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
+.+........+.++.+++|+|+++... .++..+..... +.|+++|+||+|+..... ..+....+. ..
T Consensus 63 -~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~----~~ 137 (165)
T cd01868 63 -ERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA----EK 137 (165)
T ss_pred -HHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHH----HH
Confidence 2344444555678999999999986431 22233333322 479999999999875432 122222221 11
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHH
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+ ..++.+||++|.|++++++.|.+
T Consensus 138 --~~-~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 138 --NG-LSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred --cC-CEEEEEECCCCCCHHHHHHHHHH
Confidence 22 35789999999999999988764
No 105
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.65 E-value=4.3e-07 Score=86.59 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=90.9
Q ss_pred ccccccCCCcccccCccccccCCC-CCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESD-APGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~-~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
..++..+|..++|+.+++...... -+.|.+ |. ...............+.||+|- +
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~p-----t~-------g~~~~~~~~~~~~~~i~D~~Gq------------~ 72 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TI-------GFNVETVEYKNISFTVWDVGGQ------------D 72 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCccccC-----Cc-------ceeEEEEEECCEEEEEEECCCC------------H
Confidence 357899999999999999876432 112211 11 1111223333445678999763 4
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.++........++|.+|+|+|+++.+. .....+..++ .+.|+++|+||+|+.... ..+.+.+. +.-..
T Consensus 73 ~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~----l~l~~ 147 (181)
T PLN00223 73 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDK----LGLHS 147 (181)
T ss_pred HHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC-CHHHHHHH----hCccc
Confidence 455555666789999999999997541 1222233222 357999999999985432 22222221 11111
Q ss_pred cC--ceeEEEeccCCccChhhhHHHHHHhh
Q 008807 243 LN--VLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 243 l~--~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
+. ...++.+||++|.|++++++.|.+.+
T Consensus 148 ~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 148 LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred cCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 10 11245689999999999998887643
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.65 E-value=1.6e-07 Score=89.57 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=90.1
Q ss_pred cccccCCCcccccCccccccCC-CCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSES-DAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~-~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
.++..+|..++|+.+++..... ....|.+. . ...+...........++||+|. +.
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T-----~-------~~~~~~~~~~~~~~~l~D~~G~------------~~ 73 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVVTTIPT-----I-------GFNVETVEYKNLKFTMWDVGGQ------------DK 73 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccCCc-----c-------ccceEEEEECCEEEEEEECCCC------------Hh
Confidence 4789999999999999987632 22223211 1 1112233334455778999863 34
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhccc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKL 243 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l 243 (553)
++.........+|.+|+|+|+++... .....+..+. ...|+++|+||+|+.... ....+.+. +....+
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~----l~~~~~ 148 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM-STTEVTEK----LGLHSV 148 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC-CHHHHHHH----hCCCcc
Confidence 55555666789999999999987531 1122222222 347899999999985332 22222221 111111
Q ss_pred C--ceeEEEeccCCccChhhhHHHHHHh
Q 008807 244 N--VLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 244 ~--~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
. ...++.+||++|.|++++++.|.+.
T Consensus 149 ~~~~~~~~~~Sa~tg~gv~e~~~~l~~~ 176 (182)
T PTZ00133 149 RQRNWYIQGCCATTAQGLYEGLDWLSAN 176 (182)
T ss_pred cCCcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence 1 1234568999999999999888754
No 107
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.64 E-value=3.3e-07 Score=85.23 Aligned_cols=148 Identities=20% Similarity=0.175 Sum_probs=89.5
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|..+.|++++++..-... ..|.+. . ..+.....+...+. ...++||+|.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t-----~-----~~~~~~~~~~~~~~~~~~~i~D~~G~------------ 61 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYIST-----I-----GVDFKIRTIELDGKTIKLQIWDTAGQ------------ 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----c-----ceeEEEEEEEECCEEEEEEEEECCCc------------
Confidence 46678999999999998764321 111111 0 00222233333322 3568899763
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~ 241 (553)
+.+........+.+|.+++|+|+++.. ..++..+.... .+.|+++|.||+|+...... ......+. .
T Consensus 62 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~------~ 135 (166)
T cd01869 62 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFA------D 135 (166)
T ss_pred HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHH------H
Confidence 234444455567899999999998753 12223333322 35799999999998654321 22222332 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..+ ..++.+||++|.|++++++.|.+.
T Consensus 136 ~~~-~~~~~~Sa~~~~~v~~~~~~i~~~ 162 (166)
T cd01869 136 ELG-IPFLETSAKNATNVEQAFMTMARE 162 (166)
T ss_pred HcC-CeEEEEECCCCcCHHHHHHHHHHH
Confidence 223 368899999999999999888653
No 108
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.64 E-value=2.4e-07 Score=89.98 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=68.6
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCC--ChhhHHHHHH--HhCCCCEEEEEEcccCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDF--NGSFLARIRD--LAGANPIILVVTKVDLL 221 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~--~~s~~~~l~~--~~~~~pvIlVlNKiDLl 221 (553)
+...++||+|. +.|.......+..+|++++|+|+.++ .......+.. ..+..|+++|+||+|+.
T Consensus 83 ~~i~~iDtPG~------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 83 RHVSFVDCPGH------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLV 150 (203)
T ss_pred cEEEEEECCCh------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 55789999873 34555555556688999999999873 2221222221 12345789999999997
Q ss_pred CCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 222 PKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.... .....+.+.+.+.........++.+||+++.|+++|++.|.+.+
T Consensus 151 ~~~~-~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 151 KEEQ-ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred CHHH-HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 5321 11111111111111111224689999999999999999987644
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.64 E-value=1.5e-07 Score=89.66 Aligned_cols=151 Identities=18% Similarity=0.146 Sum_probs=87.8
Q ss_pred cccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEe---cCCccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRL---LSHGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~---l~~~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|...+|+.+++....... .++.+...+ +.....+.. ......+.||+|.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~----------~~~~~~~~~~~~~~~~l~l~Dt~G~----------- 62 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGF----------NTEKIKVSLGNSKGITFHFWDVGGQ----------- 62 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCcCCcccc----------ceeEEEeeccCCCceEEEEEECCCc-----------
Confidence 467788999999999988764321 122111101 111222221 1234678999863
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh--h---hHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG--S---FLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTK 240 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~--s---~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~ 240 (553)
+.+..........+|++++|+|++++.. . ++..+.... .+.|+++|+||+|+.... ..+.+..++ ..
T Consensus 63 -~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~-~~~~~~~~~----~~ 136 (183)
T cd04152 63 -EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL-SVSEVEKLL----AL 136 (183)
T ss_pred -HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC-CHHHHHHHh----Cc
Confidence 3344444555678999999999988531 1 122222211 358999999999986432 222222221 10
Q ss_pred ccc---CceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKL---NVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l---~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
... ....++.+||+++.|++++++.|.+.
T Consensus 137 ~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 137 HELSASTPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred cccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence 111 11347889999999999998887653
No 110
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.64 E-value=4.4e-07 Score=86.63 Aligned_cols=166 Identities=17% Similarity=0.080 Sum_probs=102.9
Q ss_pred cccccCCCcccccCccccccCCCCC-cccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAP-GYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~-GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
..++.+|-+|.|+++.+++.-..+. -.+. +.+..+..--++.......++|.+| .||....+ ...+.
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtS----------ktPGrTq~iNff~~~~~~~lVDlPG-YGyAkv~k-~~~e~ 92 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTS----------KTPGRTQLINFFEVDDELRLVDLPG-YGYAKVPK-EVKEK 92 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecC----------CCCCccceeEEEEecCcEEEEeCCC-cccccCCH-HHHHH
Confidence 3677889999999999987655320 1110 0011111123344444578999998 47876655 44667
Q ss_pred HHHHHHHhhhc---ccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCc
Q 008807 171 LREKLSHLRRE---KALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNV 245 (553)
Q Consensus 171 ~~~~l~~~~~~---adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~ 245 (553)
+...+.+.++. -..+++++|++.+......++.+++ .+.|+++|+||+|-++...... ....+.+.+.......
T Consensus 93 w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k-~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 93 WKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNK-QLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHH-HHHHHHHHhcCCCCcc
Confidence 77777776643 4568889999987765554444443 4789999999999998653221 1122222221111111
Q ss_pred eeEEEeccCCccChhhhHHHHHHhh
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..+++.|+.++.|+++|.+.|.+.+
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHh
Confidence 1288899999999999998887654
No 111
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.63 E-value=3.2e-07 Score=87.06 Aligned_cols=158 Identities=19% Similarity=0.150 Sum_probs=86.0
Q ss_pred ccccccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCcccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l 167 (553)
++..++.+.|...+|+++.++...... .+.+.+....| .+. . ++.......++||+|.. +... +...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t-------~~~--~-~~~~~~~~~liDtpG~~-~~~~-~~~~ 83 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRT-------QLI--N-FFEVNDGFRLVDLPGYG-YAKV-SKEE 83 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcc-------eEE--E-EEEeCCcEEEEeCCCCc-cccC-ChhH
Confidence 555688999999999999998765432 22222111111 111 1 12223467899998742 2111 1111
Q ss_pred HHHHHHHHHHhhh---cccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 168 ADELREKLSHLRR---EKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 168 ~e~~~~~l~~~~~---~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.+.+...+...+. .++.+++|+|+.+........+...+ .++|+++|+||+|+.+... .....+.+.+.+....
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 84 KEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSE-LNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHH-HHHHHHHHHHHHhhcc
Confidence 2344443433332 45799999999864322222222222 3689999999999975432 1111222222222221
Q ss_pred cCceeEEEeccCCccChh
Q 008807 243 LNVLSVHLTSSKSLAGIV 260 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~ 260 (553)
.. ..++.+||++|.|++
T Consensus 163 ~~-~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DD-PSVQLFSSLKKTGID 179 (179)
T ss_pred CC-CceEEEECCCCCCCC
Confidence 11 368999999999974
No 112
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.63 E-value=7.2e-08 Score=96.72 Aligned_cols=60 Identities=28% Similarity=0.444 Sum_probs=43.2
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
..+++++|.+|||||||+|+|++.. ...+++.+++|...........+ ..++||||+...
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~-------------~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGER-------------KAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC-------------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 4589999999999999999999862 22356666677655444332223 469999999754
No 113
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.63 E-value=3.5e-07 Score=86.47 Aligned_cols=152 Identities=13% Similarity=0.088 Sum_probs=89.3
Q ss_pred ccccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
..++..+|..++|+++++.....+. ..|.+.--+ +. ...........+.||+|. +
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~----------~~--~~~~~~~~~l~l~D~~G~------------~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGF----------NV--ETVTYKNISFTVWDVGGQ------------D 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCcccc----------ce--EEEEECCEEEEEEECCCC------------h
Confidence 3578899999999999988773221 122211000 11 112233345678999873 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.++........++|.+|+|+|+++.. ......+..+. .+.|+++|+||+||.... ....+.+.+ . .....
T Consensus 69 ~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~-~-~~~~~ 145 (175)
T smart00177 69 KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM-KAAEITEKL-G-LHSIR 145 (175)
T ss_pred hhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC-CHHHHHHHh-C-ccccC
Confidence 34444555578999999999998853 11122222221 347999999999986432 122222211 0 00000
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHh
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
-....++.+||++|.|++++++.|.+.
T Consensus 146 ~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 146 DRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred CCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 011235679999999999999988654
No 114
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.63 E-value=2.4e-07 Score=85.58 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=85.7
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|..++|+.++++..-.+ -|... .-.| ..+.........+. ...++||+|.. .
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~--~~~~~-~~~t------~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------~ 61 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG--IFVEK-YDPT------IEDSYRKQIEVDGQQCMLEILDTAGTE------------Q 61 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCcc-cCCc------hhhhEEEEEEECCEEEEEEEEECCCcc------------c
Confidence 5667899999999988765432 12211 0001 11222233333322 23578998742 2
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKK 242 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~ 242 (553)
+..........+|.+++|+|+.+... .+...+.... .+.|+++|+||+|+.+.... ......+ ...
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~ 135 (163)
T cd04136 62 FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQAL------ARQ 135 (163)
T ss_pred cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHH------HHH
Confidence 22223334568999999999987531 1222333222 35799999999998754321 1111111 122
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+ ..++.+||+++.|++++++.|.+
T Consensus 136 ~~-~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 136 WG-CPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred cC-CeEEEecCCCCCCHHHHHHHHHH
Confidence 33 46789999999999999988764
No 115
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.62 E-value=3e-07 Score=86.00 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=89.7
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
+..++...|...+|++++++.........+. .+. ......+...+....++||+|. .
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~----~t~-------g~~~~~i~~~~~~~~~~D~~G~------------~ 69 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHIT----PTQ-------GFNIKTVQSDGFKLNVWDIGGQ------------R 69 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccC----CCC-------CcceEEEEECCEEEEEEECCCC------------H
Confidence 3557899999999999999877653211111 111 1222344455566778999763 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHH-----hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDL-----AGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~-----~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.+........+.+|.+++|+|+++... .....+... ....|+++|+||+|+.... ....+.+ .+....
T Consensus 70 ~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~i~~----~l~~~~ 144 (173)
T cd04155 70 AIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-PAEEIAE----ALNLHD 144 (173)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-CHHHHHH----HcCCcc
Confidence 333334445678899999999987421 111111111 1358999999999986543 1222211 111111
Q ss_pred c--CceeEEEeccCCccChhhhHHHHH
Q 008807 243 L--NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 243 l--~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
+ ....++.+||++|.|++++++.|.
T Consensus 145 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 145 LRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred cCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 1 112467899999999999988875
No 116
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.62 E-value=3.9e-07 Score=84.09 Aligned_cols=150 Identities=17% Similarity=0.128 Sum_probs=89.7
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|...+|++++++...... | ......+. ..+.........+ ....++||+|. +.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~--~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~D~~G~------------~~ 61 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGK--F-SEQYKSTI-----GVDFKTKTIEVDGKRVKLQIWDTAGQ------------ER 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--C-CCCCCCce-----eeEEEEEEEEECCEEEEEEEEECCCh------------HH
Confidence 45677889999999998765321 1 11100000 0011222222222 13457888763 34
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCC-CChhhHHHHHHHHHhhccc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKG-TDFNCVGDWVVEATTKKKL 243 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~-~~~~~~~~~~~~~~~~~~l 243 (553)
+..........+|++++|+|+.++.. .++..+.... .+.|+++|+||+|+.... ...+...++. ...
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~------~~~ 135 (164)
T smart00175 62 FRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA------EEH 135 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH------HHc
Confidence 44455556778999999999987541 1223333222 358999999999987633 2233333332 123
Q ss_pred CceeEEEeccCCccChhhhHHHHHHh
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
+ ..++.+||+++.|++++++.|.+.
T Consensus 136 ~-~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 136 G-LPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred C-CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3 358999999999999999888754
No 117
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.62 E-value=2.4e-07 Score=86.14 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=86.1
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|....|+.+++++.-.+ .|.+.... +. ..+.........+ ....+.||+|. +.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~--~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~i~Dt~G~------------~~ 61 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMD--GYEPQQLS-TY-----ALTLYKHNAKFEGKTILVDFWDTAGQ------------ER 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCCCcCC-ce-----eeEEEEEEEEECCEEEEEEEEeCCCc------------hh
Confidence 4567788999999999865422 12211100 00 0011111111211 13457899763 34
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNV 245 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~ 245 (553)
|..........+|++|+|+|+.+... .++..+.....+.|+++|+||+|+.+.. .....++ . ...+
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~----~--~~~~- 132 (161)
T cd04124 62 FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV--TQKKFNF----A--EKHN- 132 (161)
T ss_pred hhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH--HHHHHHH----H--HHcC-
Confidence 44455566779999999999987532 2333343333468999999999985321 1111111 1 1122
Q ss_pred eeEEEeccCCccChhhhHHHHHHh
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..++.+||+++.|++++++.+.+.
T Consensus 133 ~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 133 LPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 357889999999999999887653
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.61 E-value=2.5e-07 Score=85.30 Aligned_cols=145 Identities=15% Similarity=0.086 Sum_probs=83.2
Q ss_pred cccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEe-cCCccEEEecCCCCCccCCCccccHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRL-LSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~-l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
+...|..++|+.++++..-... ..+.+ |. ......+.. ......+.||+|. +.+
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~~~-----t~-------~~~~~~~~~~~~~~l~i~D~~G~------------~~~ 57 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTTIP-----TV-------GFNVEMLQLEKHLSLTVWDVGGQ------------EKM 57 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccccC-----cc-------CcceEEEEeCCceEEEEEECCCC------------HhH
Confidence 4567888999999988765432 11111 11 001112222 1235678899874 233
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhccc-
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKL- 243 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l- 243 (553)
.........++|++++|+|+++.. ......+..+. .+.|+++|+||+|+.... ....+... +....+
T Consensus 58 ~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~i~~~----~~~~~~~ 132 (160)
T cd04156 58 RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-TAEEITRR----FKLKKYC 132 (160)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-CHHHHHHH----cCCcccC
Confidence 333344467899999999998864 11112222221 468999999999985432 12222111 110111
Q ss_pred --CceeEEEeccCCccChhhhHHHHH
Q 008807 244 --NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 244 --~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
....++.+||++|.|++++++.|.
T Consensus 133 ~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 133 SDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred CCCcEEEEecccccCCChHHHHHHHh
Confidence 113578899999999999988875
No 119
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.61 E-value=4.1e-07 Score=87.16 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=85.1
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
+..+|..++|+.++++..-.+ -|...... | ..+.....+...+. ...++||+|. +.+
T Consensus 2 i~ivG~~~vGKTsli~~l~~~--~f~~~~~~-t------~~~~~~~~~~~~~~~~~l~i~Dt~G~------------~~~ 60 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLN--HFVETYDP-T------IEDSYRKQVVVDGQPCMLEVLDTAGQ------------EEY 60 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhC--CCCccCCC-c------hHhhEEEEEEECCEEEEEEEEECCCc------------hhh
Confidence 456788899999998754321 11111000 0 01222233333333 2567999874 223
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh----CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhc
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA----GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKK 241 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~ 241 (553)
..........+|++|+|+|+.+.. ..+...+.... .+.|+++|+||+|+...... .....++. .
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~------~ 134 (190)
T cd04144 61 TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA------R 134 (190)
T ss_pred HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH------H
Confidence 333334566899999999998753 12333333322 25799999999999753321 11112221 2
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.++ ..++.+||++|.|++++++.+.+
T Consensus 135 ~~~-~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 135 RLG-CEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred HhC-CEEEEecCCCCCCHHHHHHHHHH
Confidence 233 35789999999999999888764
No 120
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.61 E-value=4e-07 Score=84.43 Aligned_cols=154 Identities=14% Similarity=0.013 Sum_probs=86.2
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec---CCccEEEecCCCCCccCCCccccHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL---SHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l---~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
+..+|..++|+.++++...... +. ...... ...+.....+... +....++||+|.. .
T Consensus 3 i~iiG~~~~GKtsli~~l~~~~--~~-~~~~~~-----~t~~~~~~~~~~~~~~~~~~~iiDtpG~~------------~ 62 (168)
T cd01887 3 VTVMGHVDHGKTTLLDKIRKTN--VA-AGEAGG-----ITQHIGAFEVPAEVLKIPGITFIDTPGHE------------A 62 (168)
T ss_pred EEEEecCCCCHHHHHHHHHhcc--cc-cccCCC-----eEEeeccEEEecccCCcceEEEEeCCCcH------------H
Confidence 5677889999999998765321 11 110000 0001111222222 3457899998741 2
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhh-HHHHHHH-hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhh--ccc-Cc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSF-LARIRDL-AGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTK--KKL-NV 245 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~-~~~l~~~-~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~--~~l-~~ 245 (553)
+..........+|++++|+|+.+..... ...+..+ ..+.|+++|+||+|+.... ...+.+.+.+.... +.. ..
T Consensus 63 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~ 140 (168)
T cd01887 63 FTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN--PERVKNELSELGLQGEDEWGGD 140 (168)
T ss_pred HHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc--HHHHHHHHHHhhccccccccCc
Confidence 3333333456899999999998743211 1111111 1468999999999987432 12222211111100 011 12
Q ss_pred eeEEEeccCCccChhhhHHHHHHh
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..++.+||+++.|+++|++.|.+.
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 141 VQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred CcEEEeecccCCCHHHHHHHHHHh
Confidence 468999999999999999988754
No 121
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.61 E-value=5e-07 Score=82.98 Aligned_cols=148 Identities=14% Similarity=0.161 Sum_probs=86.2
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEE-EEecC--CccEEEecCCCCCccCCCccccHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGR-CRLLS--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~R-c~~l~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
++..+|..+.|+++.+++.-.. .|.+.....+ ....... ....+ ....++||+|. +
T Consensus 2 ki~i~G~~~~GKStli~~l~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~D~~g~------------~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN--KFNEKHESTT-------QASFFQKTVNIGGKRIDLAIWDTAGQ------------E 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCCCcCCcc-------ceeEEEEEEEECCEEEEEEEEECCch------------H
Confidence 4567889999999998765432 1111110000 1122222 22222 23567898763 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhC-CCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAG-ANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~-~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~ 242 (553)
.+.........++|.+++|+|+.+.+. .+...+..... +.|+++|+||+|+..... ....+.++. ..
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~------~~ 134 (162)
T cd04123 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYA------KS 134 (162)
T ss_pred HHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH------HH
Confidence 333334444568999999999987542 22333333322 579999999999975432 122222221 11
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+ ..++.+||+++.|++++++.|.+
T Consensus 135 ~~-~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 135 VG-AKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred cC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence 23 45789999999999999988865
No 122
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.60 E-value=6.9e-07 Score=80.65 Aligned_cols=156 Identities=18% Similarity=0.100 Sum_probs=87.7
Q ss_pred CCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec-CCccEEEecCCCCCccCCCccccHHHHHHHH
Q 008807 97 AVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL-SHGHMITAVGGNGGYAGGKQFVSADELREKL 175 (553)
Q Consensus 97 ~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l 175 (553)
.|..-+|+++.++................+ .+......... .....++||+|...+... ........
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~-----~~~~~~~~ 69 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTT-------TDPVEYVWELGPLGPVVLIDTPGIDEAGGL-----GREREELA 69 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccCCCCCcE-------ECCeEEEEEecCCCcEEEEECCCCCccccc-----hhhHHHHH
Confidence 456677888887764432111111100001 12222222222 456789999886432211 11112233
Q ss_pred HHhhhcccEEEEEcccCCCChhhHHH-HHHH-hCCCCEEEEEEcccCCCCCCChhhHHHHHH-HHHhhcccCceeEEEec
Q 008807 176 SHLRREKALIVKLVDIVDFNGSFLAR-IRDL-AGANPIILVVTKVDLLPKGTDFNCVGDWVV-EATTKKKLNVLSVHLTS 252 (553)
Q Consensus 176 ~~~~~~adlIl~VVD~~d~~~s~~~~-l~~~-~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~-~~~~~~~l~~~~vi~iS 252 (553)
......+|++++|+|+.+........ +... ....|+++|+||+|+....... .+.. ............++.+|
T Consensus 70 ~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 70 RRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEE----ELLELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHH----HHHHHHHhhcccccCCceEEEe
Confidence 44556899999999999876444432 2211 2478999999999998654321 1110 01111222335689999
Q ss_pred cCCccChhhhHHHHHH
Q 008807 253 SKSLAGIVGVASEIQK 268 (553)
Q Consensus 253 Ak~g~gi~~Ll~~L~~ 268 (553)
|+++.|++++++.|.+
T Consensus 146 a~~~~~v~~l~~~l~~ 161 (163)
T cd00880 146 ALTGEGIDELREALIE 161 (163)
T ss_pred eeccCCHHHHHHHHHh
Confidence 9999999999888764
No 123
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.60 E-value=5.7e-07 Score=84.01 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=89.5
Q ss_pred cccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|...+|++++++..... ...|.+... .+.....+...+. ...+.||+|.
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~----------~~~~~~~~~~~~~~~~l~l~D~~g~----------- 62 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIG----------IDFKIRTIELDGKKIKLQIWDTAGQ----------- 62 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCcc----------ceEEEEEEEECCEEEEEEEEeCCch-----------
Confidence 36778899999999999866432 122222110 0222233333322 3467898763
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
+.+........+++|.+++|+|+.+... .+...+.... .+.|+++|.||+|+..... ......++.
T Consensus 63 -~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------ 135 (167)
T cd01867 63 -ERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALA------ 135 (167)
T ss_pred -HHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH------
Confidence 2344444555679999999999987431 1222232222 3578999999999975432 122222221
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.+.+.
T Consensus 136 ~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~ 163 (167)
T cd01867 136 DEYG-IKFLETSAKANINVEEAFFTLAKD 163 (167)
T ss_pred HHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 1223 357999999999999999888754
No 124
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.60 E-value=3.6e-07 Score=85.16 Aligned_cols=146 Identities=14% Similarity=0.060 Sum_probs=85.2
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|..++|++++++..-.+. ..|.+.. ............ ....++||+|...
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~-----------~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------- 61 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-----------EDTYRQVISCSKNICTLQITDTTGSHQ---------- 61 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc-----------hheEEEEEEECCEEEEEEEEECCCCCc----------
Confidence 56788999999999998764321 1222211 012222222211 2356889987532
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh----CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA----GANPIILVVTKVDLLPKGT-DFNCVGDWVVEAT 238 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~ 238 (553)
+..........++.+|+|+|+.+... .+...+.... .+.|+++|.||+|+..... .......+.
T Consensus 62 --~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---- 135 (165)
T cd04140 62 --FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA---- 135 (165)
T ss_pred --chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH----
Confidence 11222334567899999999987542 1222233222 3579999999999975322 111111221
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+ ..++.+||++|.|++++++.|.+
T Consensus 136 --~~~~-~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 136 --TEWN-CAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred --HHhC-CcEEEeecCCCCCHHHHHHHHHh
Confidence 1122 35788999999999999988764
No 125
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.60 E-value=3.6e-07 Score=88.34 Aligned_cols=148 Identities=14% Similarity=0.051 Sum_probs=88.2
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEec-C--CccEEEecCCCCCccCCCcccc
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLL-S--HGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~--~~~~~~dTaG~vgf~~~~~~~l 167 (553)
++..+|...+|+.++++..-... ..|.+ |. ..+......... + ....+.||+|.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~-----t~-----~~d~~~~~v~~~~~~~~~l~l~Dt~G~----------- 60 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKA-----TI-----GVDFALKVIEWDPNTVVRLQLWDIAGQ----------- 60 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCC-----ce-----eEEEEEEEEEECCCCEEEEEEEECCCc-----------
Confidence 35567888899999988644321 11111 10 002222333332 2 23568899874
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-----CCCCEEEEEEcccCCCC-CCChhhHHHHHHH
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-----GANPIILVVTKVDLLPK-GTDFNCVGDWVVE 236 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-----~~~pvIlVlNKiDLl~~-~~~~~~~~~~~~~ 236 (553)
+.+..........+|.+|+|+|+++... .+...+.... ...|+++|+||+||.+. ....+.+.++.
T Consensus 61 -~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-- 137 (201)
T cd04107 61 -ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC-- 137 (201)
T ss_pred -hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH--
Confidence 2344444555679999999999987531 1223333221 35799999999999742 22233344442
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+...++.+||++|.|++++++.|.+
T Consensus 138 ----~~~~~~~~~e~Sak~~~~v~e~f~~l~~ 165 (201)
T cd04107 138 ----KENGFIGWFETSAKEGINIEEAMRFLVK 165 (201)
T ss_pred ----HHcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 1223346889999999999999888764
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.60 E-value=3.6e-07 Score=84.18 Aligned_cols=149 Identities=13% Similarity=0.016 Sum_probs=87.9
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELRE 173 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~ 173 (553)
+...|...+|++++++.........+.+ +. ...............++||+|.. .+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~~~~----t~-------~~~~~~~~~~~~~~~i~D~~G~~------------~~~~ 58 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTTIP----TI-------GFNVETVEYKNVSFTVWDVGGQD------------KIRP 58 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCC----Cc-------CcceEEEEECCEEEEEEECCCCh------------hhHH
Confidence 4566788899999998776543221111 11 11122233334567899998742 2233
Q ss_pred HHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHH--hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCce
Q 008807 174 KLSHLRREKALIVKLVDIVDFN-----GSFLARIRDL--AGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVL 246 (553)
Q Consensus 174 ~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~--~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (553)
.....+..+|++++|+|+.+.. ..++..+... ....|+++|+||+|+.... ....+.+.+.... ......
T Consensus 59 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~ 135 (158)
T cd00878 59 LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-SVSELIEKLGLEK--ILGRRW 135 (158)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-CHHHHHHhhChhh--ccCCcE
Confidence 3444567899999999999753 1122222221 1367999999999997644 2223333221100 011124
Q ss_pred eEEEeccCCccChhhhHHHHHH
Q 008807 247 SVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.++.+||++|.|++++++.|..
T Consensus 136 ~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEEEeeCCCCCCHHHHHHHHhh
Confidence 6889999999999999888753
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.60 E-value=2.1e-07 Score=84.72 Aligned_cols=148 Identities=17% Similarity=0.089 Sum_probs=87.4
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELRE 173 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~ 173 (553)
+...|...+|++++++...... |. .....+. ..-+..+........++||+|. +.++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~--~~-~~~~~t~-------~~~~~~~~~~~~~~~~~D~~g~------------~~~~~ 59 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ--FS-EDTIPTV-------GFNMRKVTKGNVTLKVWDLGGQ------------PRFRS 59 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC--CC-cCccCCC-------CcceEEEEECCEEEEEEECCCC------------HhHHH
Confidence 4567888899999988775431 11 1111111 1122334444455678899763 34445
Q ss_pred HHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc--cC
Q 008807 174 KLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK--LN 244 (553)
Q Consensus 174 ~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~--l~ 244 (553)
........+|++++|+|+.+... .....+..+. .+.|+++|+||+|+..... ...+.+. ..... ..
T Consensus 60 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~----~~~~~~~~~ 134 (159)
T cd04159 60 MWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS-VDELIEQ----MNLKSITDR 134 (159)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC-HHHHHHH----hCcccccCC
Confidence 55666778999999999987532 1112222221 3579999999999875432 2111111 11111 11
Q ss_pred ceeEEEeccCCccChhhhHHHHHH
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...++.+||+++.|++++++.|.+
T Consensus 135 ~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 135 EVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ceEEEEEEeccCCChHHHHHHHhh
Confidence 145789999999999999888753
No 128
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.59 E-value=5e-08 Score=97.67 Aligned_cols=60 Identities=30% Similarity=0.288 Sum_probs=43.5
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLHH 345 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~~ 345 (553)
..++++|.||||||||.|.+++.. -..+|..++|||..+--.+-.+. ..+|||||+...+
T Consensus 73 L~vavIG~PNvGKStLtN~mig~k-------------v~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQK-------------VSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKK 134 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCc-------------cccccccccceeeeeeEEEecCceEEEEecCCcccccc
Confidence 379999999999999999999862 23467778899854332222222 2489999998763
No 129
>PTZ00099 rab6; Provisional
Probab=98.59 E-value=3.3e-07 Score=87.12 Aligned_cols=107 Identities=19% Similarity=0.154 Sum_probs=68.6
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDL 220 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDL 220 (553)
...++||+|. +.+..........+|++|+|+|+++.. ..++..+.... .+.|++||.||+||
T Consensus 30 ~l~iwDt~G~------------e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL 97 (176)
T PTZ00099 30 RLQLWDTAGQ------------ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDL 97 (176)
T ss_pred EEEEEECCCh------------HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence 4568899874 344444455567999999999998843 12333443322 24688999999999
Q ss_pred CCCCC-ChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhcc
Q 008807 221 LPKGT-DFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKG 272 (553)
Q Consensus 221 l~~~~-~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g 272 (553)
..... .......+. ...+ ..++.+||++|.|++++++.|.+.++.
T Consensus 98 ~~~~~v~~~e~~~~~------~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 98 GDLRKVTYEEGMQKA------QEYN-TMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccccCCCHHHHHHHH------HHcC-CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 64321 122222221 1223 346789999999999999988765543
No 130
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.59 E-value=5.3e-07 Score=86.45 Aligned_cols=149 Identities=18% Similarity=0.132 Sum_probs=88.0
Q ss_pred ccccCCCcccccCccccccCCCC--Cc-ccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcccc
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PG-YVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~G-Y~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l 167 (553)
++.++|..++|++++++...... .+ |.+... .+.........+ ....++||+|.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~----------~~~~~~~~~~~~~~~~~~i~Dt~G~----------- 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVG----------IDFRNKVVTVDGVKVKLQIWDTAGQ----------- 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCccc----------ceeEEEEEEECCEEEEEEEEeCCCc-----------
Confidence 45678899999999996543221 11 111100 011112222222 23567899873
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
+.+..........+|++|+|+|+.+.+ ..+...+.... ...|+++|+||+||..... .......+.
T Consensus 61 -~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~------ 133 (191)
T cd04112 61 -ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLA------ 133 (191)
T ss_pred -HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHH------
Confidence 344444445567899999999998753 12233343332 2579999999999975332 112222221
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||++|.|+++|++.|.+..
T Consensus 134 ~~~~-~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 134 KEYG-VPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred HHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1223 3578999999999999999887654
No 131
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.59 E-value=6e-07 Score=85.70 Aligned_cols=152 Identities=13% Similarity=0.114 Sum_probs=85.8
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|..+.|+.++++..-.+. .-|.+ |. ..+.........+ ....+.||+|.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~-----T~-----g~~~~~~~i~~~~~~~~l~iwDt~G~------------ 59 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQ-----TL-----GVNFMEKTISIRGTEITFSIWDLGGQ------------ 59 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----cc-----ceEEEEEEEEECCEEEEEEEEeCCCc------------
Confidence 35667888999999987653211 11222 11 0022223333333 23468899764
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhCCCCEEEEEEcccCCCCCC--ChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAGANPIILVVTKVDLLPKGT--DFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~~~pvIlVlNKiDLl~~~~--~~~~~~~~~~~~~~~~ 241 (553)
+.+.........++|++++|+|+++... .++..+.......+.|+|.||+||..... ....+.+...+ + ..
T Consensus 60 ~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~-~-a~ 137 (182)
T cd04128 60 REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARK-Y-AK 137 (182)
T ss_pred hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHH-H-HH
Confidence 2344444455679999999999988642 33444433322233478999999964211 11111111111 1 12
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..+ ..++.+||++|.|++++++.+.+.
T Consensus 138 ~~~-~~~~e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 138 AMK-APLIFCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred HcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 233 457899999999999999887653
No 132
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.59 E-value=4.4e-07 Score=84.04 Aligned_cols=148 Identities=17% Similarity=0.046 Sum_probs=85.1
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|..++|+.++++..-.+ -..+..-.| ..+..+..+...+. ...+.||+|.. .
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~---~~~~~~~~t------~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------~ 61 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG---TFIEKYDPT------IEDFYRKEIEVDSSPSVLEILDTAGTE------------Q 61 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC---CCCCCCCCc------hhheEEEEEEECCEEEEEEEEECCCcc------------c
Confidence 4677899999999998543321 111100000 01223333433332 24578998742 2
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKK 242 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~ 242 (553)
|.........++|.+++|+|+.|.. ..+...+.... .+.|+++|+||+|+.+.... ......+ ...
T Consensus 62 ~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~------~~~ 135 (163)
T cd04176 62 FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL------AEE 135 (163)
T ss_pred ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH------HHH
Confidence 2222334456899999999998854 12222233222 36899999999998654321 1111111 112
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+ ..++.+||+++.|++++++.+.+
T Consensus 136 ~~-~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 136 WG-CPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred hC-CEEEEecCCCCCCHHHHHHHHHH
Confidence 23 35789999999999999888765
No 133
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.58 E-value=3.2e-07 Score=85.70 Aligned_cols=150 Identities=17% Similarity=0.091 Sum_probs=85.9
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEe--cCCccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRL--LSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~--l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|...+|+.++++..-.. ..+.....+. +........ ......++||+|.. .
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~---~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~Dt~G~~------------~ 59 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSE---EFPENVPRVL-------PEITIPADVTPERVPTTIVDTSSRP------------Q 59 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC---cCCccCCCcc-------cceEeeeeecCCeEEEEEEeCCCch------------h
Confidence 4567788999999999875432 1111110111 111111111 22345789998642 1
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCCh--hhHHHHHHHHHhhcc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDF--NCVGDWVVEATTKKK 242 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~--~~~~~~~~~~~~~~~ 242 (553)
+...+...+..+|++++|+|+.+... .+.+.+.......|+++|+||+|+.+..... .....++.+.+ .
T Consensus 60 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~- 136 (166)
T cd01893 60 DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEF--R- 136 (166)
T ss_pred hhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHH--h-
Confidence 22223333578999999999987432 1233333333468999999999997654311 11111211111 1
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
....++.+||+++.|++++++.+.+
T Consensus 137 -~~~~~~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 137 -EIETCVECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred -cccEEEEeccccccCHHHHHHHHHH
Confidence 1136789999999999999988765
No 134
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.58 E-value=3.8e-07 Score=84.67 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=87.1
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCc--cEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHG--HMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~--~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|..++|+++++...-.+ .|.+.. .....+.....+...+.. ..++||+|.. .
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~--~~~~~~-------~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------~ 61 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG--IFVEKY-------DPTIEDSYRKQVEVDGQQCMLEILDTAGTE------------Q 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCccc-------CCcchheEEEEEEECCEEEEEEEEECCCcc------------c
Confidence 4667889999999998764321 122110 011123333444443322 3578998742 2
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKK 242 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~ 242 (553)
+..........+|.+++|+|+.+.. ..+...+.... .+.|+++|+||+||...... .....++. +.
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------~~ 135 (164)
T cd04175 62 FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA------RQ 135 (164)
T ss_pred chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH------HH
Confidence 3333334456889999999987643 12223333221 35799999999999754321 11122221 12
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHh
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
++ ..++.+||+++.|+++++..|.+.
T Consensus 136 ~~-~~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 136 WG-CAFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred hC-CEEEEeeCCCCCCHHHHHHHHHHH
Confidence 23 457899999999999999888653
No 135
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.58 E-value=5.9e-07 Score=83.91 Aligned_cols=151 Identities=14% Similarity=0.120 Sum_probs=91.0
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++..+|...+|+.++++..-. |+..+....+. ..+.....+...++ ...+.||+|. +
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~i~D~~G~------------~ 65 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVT---NKFDTQLFHTI-----GVEFLNKDLEVDGHFVTLQIWDTAGQ------------E 65 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHc---CCCCcCcCCce-----eeEEEEEEEEECCeEEEEEEEeCCCh------------H
Confidence 4678889999999999986532 33332221111 00122223333332 2356798763 3
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHh
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATT 239 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~ 239 (553)
.+........+.+|.+++|+|+.+.. ..+...+.... .+.|+++|+||+|+.........+.++.
T Consensus 66 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----- 140 (170)
T cd04116 66 RFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWC----- 140 (170)
T ss_pred HHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHH-----
Confidence 45444555667899999999988653 12233333222 2469999999999974433333444443
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+...++.+||+++.|++++++.+.+
T Consensus 141 -~~~~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 141 -RENGDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred -HHCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 1233346789999999999999887754
No 136
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.58 E-value=3.1e-07 Score=87.36 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=86.4
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec-C--CccEEEecCCCCCccCCCccccHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL-S--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
++..+|..++|+.++++..-.+. |. .....+. .+.+...+... + ....+.||+|. +
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~--~~-~~~~~t~------~~~~~~~i~~~~~~~~~l~i~Dt~G~------------~ 60 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK--FP-EEYVPTV------FENYVTNIQGPNGKIIELALWDTAGQ------------E 60 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc--CC-CCCCCee------eeeeEEEEEecCCcEEEEEEEECCCc------------h
Confidence 45677889999999998755321 11 1000000 01122223222 1 23568899873 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCC-----ChhhHHHHHHHHH
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGT-----DFNCVGDWVVEAT 238 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-----~~~~~~~~~~~~~ 238 (553)
.+..........+|++++|+|+.+... .+...+.....+.|+++|.||+||.+... ......++.
T Consensus 61 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~---- 136 (187)
T cd04132 61 EYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVA---- 136 (187)
T ss_pred hHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHH----
Confidence 333333344678999999999987531 12222222224689999999999975431 111222221
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+...++.+||++|.|+++++..+.+
T Consensus 137 --~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 164 (187)
T cd04132 137 --KKQGAFAYLECSAKTMENVEEVFDTAIE 164 (187)
T ss_pred --HHcCCcEEEEccCCCCCCHHHHHHHHHH
Confidence 2233336789999999999999887764
No 137
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.58 E-value=5.4e-07 Score=81.86 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=88.7
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|...+|+++.++...... +. .....|. ..+..+..+.... ....++|++|. +.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~--~~-~~~~~t~-----~~~~~~~~~~~~~~~~~~~l~D~~g~------------~~ 61 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGK--FD-ENYKSTI-----GVDFKSKTIEIDGKTVKLQIWDTAGQ------------ER 61 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc--CC-CccCCce-----eeeeEEEEEEECCEEEEEEEEecCCh------------HH
Confidence 45678889999999998654221 11 1111111 0022333333322 23567888763 34
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCC-CCCCChhhHHHHHHHHHhhccc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLL-PKGTDFNCVGDWVVEATTKKKL 243 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl-~~~~~~~~~~~~~~~~~~~~~l 243 (553)
+.......++++|++++|+|+.+.+ ..+...+.... ...|+++|+||+|+. +.......+.++.. ..
T Consensus 62 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~ 135 (159)
T cd00154 62 FRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAK------EN 135 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHH------Hc
Confidence 4445566677899999999998843 12222232222 358999999999997 33333333444321 12
Q ss_pred CceeEEEeccCCccChhhhHHHHH
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
+ ..++.+||+++.|++++++.|.
T Consensus 136 ~-~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 136 G-LLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred C-CeEEEEecCCCCCHHHHHHHHh
Confidence 2 5689999999999999888764
No 138
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.58 E-value=1.9e-07 Score=89.75 Aligned_cols=156 Identities=10% Similarity=0.030 Sum_probs=85.5
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCch-----hhH--h-hhccCccceEEEEEEecCCccEEEecCCCCCccCCC
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDT-----YEL--K-KKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGK 163 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~-----f~t--~-~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~ 163 (553)
+.+..+|..+.||+++++..-.....|..... ..+ . ...+...+.....+....+...++||+|.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~------- 75 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH------- 75 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCc-------
Confidence 46788899999999998765431111211110 000 0 00000011111223334456789999874
Q ss_pred ccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHH-HHHH-hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhh-
Q 008807 164 QFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLAR-IRDL-AGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTK- 240 (553)
Q Consensus 164 ~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~-l~~~-~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~- 240 (553)
+.|..........+|.+++|+|+++........ +... ..+.|+++|+||+|+..... ...+.++ .+.+..
T Consensus 76 -----~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~-~~~~~~~ 148 (194)
T cd01891 76 -----ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARP-EEVVDEV-FDLFIEL 148 (194)
T ss_pred -----HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH-HHHHHHH-HHHHHHh
Confidence 345555566677999999999998743222222 1111 14679999999999975331 1111111 111111
Q ss_pred ----cccCceeEEEeccCCccChhhh
Q 008807 241 ----KKLNVLSVHLTSSKSLAGIVGV 262 (553)
Q Consensus 241 ----~~l~~~~vi~iSAk~g~gi~~L 262 (553)
..++ ..++.+||++|.|+.++
T Consensus 149 ~~~~~~~~-~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 149 GATEEQLD-FPVLYASAKNGWASLNL 173 (194)
T ss_pred CCccccCc-cCEEEeehhcccccccc
Confidence 1223 46889999999998654
No 139
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.57 E-value=8.5e-07 Score=81.71 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=87.2
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|...+|++++++..-... ..|.+. ..+........... ...++||+|.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~D~~g~------------ 58 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPT-----------KADSYRKKVVLDGEDVQLNILDTAGQ------------ 58 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCc-----------chhhEEEEEEECCEEEEEEEEECCCh------------
Confidence 35567888889998876553221 122211 11333344433322 3567898763
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCC-CChhhHHHHHHHHHhh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKG-TDFNCVGDWVVEATTK 240 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~-~~~~~~~~~~~~~~~~ 240 (553)
+.+..........++.+++++|+.+.. ..+...+.... .+.|+++|+||+|+.... ........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~------ 132 (164)
T cd04139 59 EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA------ 132 (164)
T ss_pred hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH------
Confidence 233334444567889999999988753 22333333331 368999999999997632 2222222221
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..++ ..++.+||+++.|++++++.|.+.
T Consensus 133 ~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (164)
T cd04139 133 RQWG-VPYVETSAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred HHhC-CeEEEeeCCCCCCHHHHHHHHHHH
Confidence 1223 368999999999999999888654
No 140
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.57 E-value=4.2e-07 Score=85.24 Aligned_cols=150 Identities=16% Similarity=0.105 Sum_probs=84.7
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELRE 173 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~ 173 (553)
+..+|..++|+.++++......++ ....|. ..........+....+.||+|. +.++.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~~~~----~~~~t~-------g~~~~~~~~~~~~~~i~D~~G~------------~~~~~ 58 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPK----KVAPTV-------GFTPTKLRLDKYEVCIFDLGGG------------ANFRG 58 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCc----cccCcc-------cceEEEEEECCEEEEEEECCCc------------HHHHH
Confidence 346788899999999876543111 111111 1122333344455678999873 23444
Q ss_pred HHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHH-HHHHhhcccCc
Q 008807 174 KLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWV-VEATTKKKLNV 245 (553)
Q Consensus 174 ~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~-~~~~~~~~l~~ 245 (553)
........+|.+++|+|+++... .....+..+. .+.|+++|+||+|+..... ...+.+.+ .+.+..+.-..
T Consensus 59 ~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~-~~~i~~~~~l~~~~~~~~~~ 137 (167)
T cd04161 59 IWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL-GADVIEYLSLEKLVNENKSL 137 (167)
T ss_pred HHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC-HHHHHHhcCcccccCCCCce
Confidence 44556779999999999998641 1111222221 3579999999999864431 22222211 00111011112
Q ss_pred eeEEEeccCCc------cChhhhHHHHH
Q 008807 246 LSVHLTSSKSL------AGIVGVASEIQ 267 (553)
Q Consensus 246 ~~vi~iSAk~g------~gi~~Ll~~L~ 267 (553)
..++.+||++| .|+++-++.|.
T Consensus 138 ~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 138 CHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred EEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 35677999998 78887777664
No 141
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.56 E-value=7.4e-07 Score=86.14 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=90.4
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l 167 (553)
...++..+|...+|++++++...... | ......|. .-+..-..+...+ ....++||+|.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~-~~~~~~t~-----~~~~~~~~~~~~~~~~~l~l~D~~G~----------- 65 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--F-SGSYITTI-----GVDFKIRTVEINGERVKLQIWDTAGQ----------- 65 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--C-CCCcCccc-----cceeEEEEEEECCEEEEEEEEeCCCc-----------
Confidence 34578889999999999997664321 1 11111111 0011111222222 13568899763
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhCCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhc
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAGANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKK 241 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~ 241 (553)
+.+..........++.+++|+|+++... .++..+.......|+++|+||+|+.+... ......++. .
T Consensus 66 -~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~------~ 138 (199)
T cd04110 66 -ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFA------G 138 (199)
T ss_pred -hhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHH------H
Confidence 2344444555678999999999987541 22333333334679999999999975432 112222221 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+ ..++.+||+++.|++++++.|.+
T Consensus 139 ~~~-~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 139 QMG-ISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred HcC-CEEEEEECCCCcCHHHHHHHHHH
Confidence 233 45889999999999999988765
No 142
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.56 E-value=3.8e-07 Score=102.38 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=89.0
Q ss_pred CCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHH
Q 008807 98 VASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKL 175 (553)
Q Consensus 98 ~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l 175 (553)
|..+.||++.++...... .|..+ ..+.+....+....++...++||+|...|.... ..+.+....
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~p----------G~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s---~~e~v~~~~ 67 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWP----------GVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFS---LEEEVARDY 67 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCC----------CeEEEEEEEEEEECCeEEEEEECCCccccCccc---hHHHHHHHH
Confidence 346788888888665432 11111 011134444555555667899999986543221 123333222
Q ss_pred HHhhhcccEEEEEcccCCCChhhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccC
Q 008807 176 SHLRREKALIVKLVDIVDFNGSFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSK 254 (553)
Q Consensus 176 ~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk 254 (553)
.. ..++|+|++|+|+++.+... ..+.... .+.|+++|+||+|+..+.......+++ .+.++ .+++.+||+
T Consensus 68 l~-~~~aDvvI~VvDat~ler~l-~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L------~~~lg-~pvv~tSA~ 138 (591)
T TIGR00437 68 LL-NEKPDLVVNVVDASNLERNL-YLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKL------EERLG-VPVVPTSAT 138 (591)
T ss_pred Hh-hcCCCEEEEEecCCcchhhH-HHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHH------HHHcC-CCEEEEECC
Confidence 11 24789999999998865332 2122221 368999999999996543211111111 22334 468999999
Q ss_pred CccChhhhHHHHHHh
Q 008807 255 SLAGIVGVASEIQKE 269 (553)
Q Consensus 255 ~g~gi~~Ll~~L~~~ 269 (553)
+|.|++++++.+.+.
T Consensus 139 tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 139 EGRGIERLKDAIRKA 153 (591)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988753
No 143
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.55 E-value=8.7e-08 Score=97.21 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=44.1
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~~~ 344 (553)
.+++|.|+||||||||+++|... ++-+.++|-||.+ +.+-.+.. ...+|||||+...
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~A--------------kpEvA~YPFTTK~-i~vGhfe~~~~R~QvIDTPGlLDR 228 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTA--------------KPEVAPYPFTTKG-IHVGHFERGYLRIQVIDTPGLLDR 228 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcC--------------CCccCCCCccccc-eeEeeeecCCceEEEecCCcccCC
Confidence 48999999999999999999864 4568899999985 34433322 2469999999754
No 144
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.55 E-value=7.9e-07 Score=83.66 Aligned_cols=106 Identities=18% Similarity=0.078 Sum_probs=66.4
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChh-hHHHHHHH-hCCCCEEEEEEcccCCCCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGS-FLARIRDL-AGANPIILVVTKVDLLPKG 224 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s-~~~~l~~~-~~~~pvIlVlNKiDLl~~~ 224 (553)
...++||+|.. .+..........+|++|+|+|+.+.... -...+... ..+.|+++|+||+|+....
T Consensus 68 ~~~l~Dt~G~~------------~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~ 135 (179)
T cd01890 68 LLNLIDTPGHV------------DFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD 135 (179)
T ss_pred EEEEEECCCCh------------hhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC
Confidence 45689998752 3444445556789999999999874321 11222211 1468999999999986432
Q ss_pred CChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 225 TDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
......++ .+ ..++....++.+||++|.|+++|++.|.+.
T Consensus 136 -~~~~~~~~-~~---~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 136 -PERVKQQI-ED---VLGLDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred -HHHHHHHH-HH---HhCCCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 11111121 11 112322358899999999999999988754
No 145
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.55 E-value=8e-07 Score=82.10 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=87.5
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|...+|++++++..-... .-|.+.-.+ +....+....+ ....++||+|.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~----------~~~~~~~~~~~~~~~l~i~Dt~G~------------ 59 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGI----------DYGVKKVSVRNKEVRVNFFDLSGH------------ 59 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce----------eEEEEEEEECCeEEEEEEEECCcc------------
Confidence 35667888899999987654321 111111000 11122222222 23568899763
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh------CCCCEEEEEEcccCCCCC-CChhhHHHHHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA------GANPIILVVTKVDLLPKG-TDFNCVGDWVVE 236 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~------~~~pvIlVlNKiDLl~~~-~~~~~~~~~~~~ 236 (553)
+.+.........++|++|+|+|+++.. ..+...+.... ...|+++|+||+|+.++. ........|.
T Consensus 60 ~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-- 137 (168)
T cd04119 60 PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-- 137 (168)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH--
Confidence 234444455567899999999998753 12333443332 247899999999997432 2222233332
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+ ..++.+||+++.|++++++.|.+
T Consensus 138 ----~~~~-~~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 138 ----ESKG-FKYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred ----HHcC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 1122 45789999999999999988765
No 146
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.55 E-value=4.2e-07 Score=85.20 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=87.4
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++...|...+|+.++++....+. ..|.+.. .+.........+. ...++||+|...
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~-----------~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------- 61 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-----------FENYVADIEVDGKQVELALWDTAGQED---------- 61 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-----------ccceEEEEEECCEEEEEEEEeCCCchh----------
Confidence 56778999999999998765432 1122111 1222233333222 356889987422
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHH-------HHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVG-------DWVV 235 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~-------~~~~ 235 (553)
+.........++|++++|+|+.+... .+...+.....+.|+++|+||+|+.+.......+. .|..
T Consensus 62 --~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~ 139 (175)
T cd01870 62 --YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 139 (175)
T ss_pred --hhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHH
Confidence 22111223568899999999876431 23333433335789999999999875432111110 0100
Q ss_pred HHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 236 EATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 236 ~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
........+...++.+||++|.|++++++.|.+
T Consensus 140 ~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 140 GRDMANKIGAFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred HHHHHHHcCCcEEEEeccccCcCHHHHHHHHHH
Confidence 000112233346899999999999999988764
No 147
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.55 E-value=6.6e-07 Score=82.84 Aligned_cols=147 Identities=16% Similarity=0.099 Sum_probs=86.2
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|..++|+.+++++.-... ..|.+. ..+.....+.... ....++||+|..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------- 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPT-----------IEDSYRKQIEIDGEVCLLDILDTAGQE----------- 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCc-----------hhhhEEEEEEECCEEEEEEEEECCCcc-----------
Confidence 45677889999999987654321 112111 1122333333322 234578998742
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
.+..........+|.+++|+|+.+... .+...+.... .+.|+++|.||+|+.+... .......+.
T Consensus 60 -~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~------ 132 (164)
T smart00173 60 -EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA------ 132 (164)
T ss_pred -cchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH------
Confidence 222223344568899999999987531 1222222222 2579999999999976432 112222221
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 133 ~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~ 160 (164)
T smart00173 133 RQWG-CPFLETSAKERVNVDEAFYDLVRE 160 (164)
T ss_pred HHcC-CEEEEeecCCCCCHHHHHHHHHHH
Confidence 1123 457899999999999999888754
No 148
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.55 E-value=1.2e-07 Score=102.67 Aligned_cols=61 Identities=48% Similarity=0.619 Sum_probs=47.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.+.+++++|.||||||||+|+|++. .++.++.+||||++.+......++ ..++||||+...
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~-------------~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQ-------------DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC-------------CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence 4568999999999999999999974 244678899999986654433333 369999998643
No 149
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.54 E-value=7.9e-07 Score=83.82 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=89.6
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec------------CCccEEEecCCCCCc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL------------SHGHMITAVGGNGGY 159 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l------------~~~~~~~dTaG~vgf 159 (553)
.++..+|....|++++++...... |. ...-.|. .-+....++... .....++||+|
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~--~~-~~~~~t~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G---- 72 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNK--FN-PKFITTV-----GIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG---- 72 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC--CC-ccCCCcc-----ceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC----
Confidence 456788889999999997653211 11 1000000 001111222221 12356889976
Q ss_pred cCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHH
Q 008807 160 AGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVG 231 (553)
Q Consensus 160 ~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~ 231 (553)
.+.+..........+|.+++|+|+.+.. ..++..+.... .+.|+++|.||+||..... ..+...
T Consensus 73 --------~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~ 144 (180)
T cd04127 73 --------QERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK 144 (180)
T ss_pred --------hHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH
Confidence 3456666666678999999999998753 12333333322 2568999999999975432 222333
Q ss_pred HHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 232 DWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 232 ~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
+|. ...+ ..++.+||+++.|++++++.|.+
T Consensus 145 ~~~------~~~~-~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 145 ALA------DKYG-IPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred HHH------HHcC-CeEEEEeCCCCCCHHHHHHHHHH
Confidence 332 1223 35789999999999999988764
No 150
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.54 E-value=2.8e-07 Score=91.68 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=97.2
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
++..+|...+|++++|+......+ .+..-.|.|. ++.-+.+...+....++||+|....... ...+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~-------~~~~g~~~~~~~~i~l~DtpG~~~~~~~-----~~~~~ 68 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTL-------TCVPGVLEYKGAKIQLLDLPGIIEGAAD-----GKGRG 68 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccc-------cceEEEEEECCeEEEEEECCCccccccc-----chhHH
Confidence 456788899999999987765321 2222234444 4555666666677889999875321110 11232
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhH---HH------------------------------------------------
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFL---AR------------------------------------------------ 201 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~---~~------------------------------------------------ 201 (553)
.+.....+.+|++++|+|+++...... +.
T Consensus 69 ~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~ 148 (233)
T cd01896 69 RQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREY 148 (233)
T ss_pred HHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHh
Confidence 333445678999999999876432110 00
Q ss_pred -----------------HHHHh-CC---CCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChh
Q 008807 202 -----------------IRDLA-GA---NPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIV 260 (553)
Q Consensus 202 -----------------l~~~~-~~---~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~ 260 (553)
+.+.+ ++ .|.++|+||+|+++.+ ....|. .. ..++.+||++++|++
T Consensus 149 ~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~----~~~~~~------~~---~~~~~~SA~~g~gi~ 215 (233)
T cd01896 149 KIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE----ELDLLA------RQ---PNSVVISAEKGLNLD 215 (233)
T ss_pred CeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHH----HHHHHh------cC---CCEEEEcCCCCCCHH
Confidence 01111 22 4889999999997542 122221 11 357889999999999
Q ss_pred hhHHHHHHhhcccceE
Q 008807 261 GVASEIQKEKKGRDVY 276 (553)
Q Consensus 261 ~Ll~~L~~~~~g~~v~ 276 (553)
+|.+.|.+.+.-.+||
T Consensus 216 ~l~~~i~~~L~~irvy 231 (233)
T cd01896 216 ELKERIWDKLGLIRVY 231 (233)
T ss_pred HHHHHHHHHhCcEEEe
Confidence 9999998766555555
No 151
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.54 E-value=1.7e-07 Score=101.87 Aligned_cols=61 Identities=41% Similarity=0.552 Sum_probs=46.7
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.+.+++++|.||||||||+|+|.+. ....+++.||||+|.+......++ ..++||||+...
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~-------------~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~ 276 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGE-------------ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRET 276 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC-------------CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCC
Confidence 3568999999999999999999864 233578899999987654433233 469999998643
No 152
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.54 E-value=5.6e-07 Score=86.11 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=86.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|....|++++++..-.+ .|.......|. ..+.........+. ...++||+|.. .
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~--~~~~~~~~~t~-----~~~~~~~~~~~~~~~~~l~i~D~~G~~------------~ 62 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHH--RFLVGPYQNTI-----GAAFVAKRMVVGERVVTLGIWDTAGSE------------R 62 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CcCCcCcccce-----eeEEEEEEEEECCEEEEEEEEECCCch------------h
Confidence 4667888999999999865432 12111110010 00122233333332 23478997642 2
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhCCCCEEEEEEcccCCCCCCCh-----hhHHHHHHHHHhh
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAGANPIILVVTKVDLLPKGTDF-----NCVGDWVVEATTK 240 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~-----~~~~~~~~~~~~~ 240 (553)
+..........+|++++|+|+.+... .++..+.....+.|+++|+||+|+....... ..+.++.
T Consensus 63 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~------ 136 (193)
T cd04118 63 YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFA------ 136 (193)
T ss_pred hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHH------
Confidence 22223334568999999999987531 2333343332368999999999987543111 1122221
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|+++|++.|.+.
T Consensus 137 ~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~ 164 (193)
T cd04118 137 DEIK-AQHFETSSKTGQNVDELFQKVAED 164 (193)
T ss_pred HHcC-CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 1222 357899999999999999888753
No 153
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.54 E-value=1.1e-06 Score=82.25 Aligned_cols=148 Identities=17% Similarity=0.074 Sum_probs=88.2
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|..++|++++++...... +.|.+. . ..+.........+ ....++||+|.
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t-----~-----~~~~~~~~~~~~~~~~~~~i~Dt~G~------------ 63 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-----I-----GVEFGARMITIDGKQIKLQIWDTAGQ------------ 63 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-----c-----ceeEEEEEEEECCEEEEEEEEECCCc------------
Confidence 56778999999999998765421 111110 0 0022222222222 23568898762
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~ 241 (553)
+.+........+.+|++++|+|+.+.. ..++..+.... .+.|+++|.||+|+..+.. ..+....+. .
T Consensus 64 ~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~----~-- 137 (168)
T cd01866 64 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFA----K-- 137 (168)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH----H--
Confidence 345554555667899999999998743 12222232221 3578999999999974432 222222221 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..+ ..++.+||+++.|+++++..+.+.
T Consensus 138 ~~~-~~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 138 EHG-LIFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred HcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 122 357899999999999998777653
No 154
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.54 E-value=5.9e-07 Score=83.00 Aligned_cols=149 Identities=19% Similarity=0.134 Sum_probs=87.7
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccc-eEEEEEEecC--CccEEEecCCCCCccCCCccccHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKT-VLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd-~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
++...|...+|+++.++..-... +.+..-.+ ... .....+.... ....++||+|- +
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~---~~~~~~~t------~~~~~~~~~v~~~~~~~~~~i~D~~G~------------~ 61 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE---FSENQEST------IGAAFLTQTVNLDDTTVKFEIWDTAGQ------------E 61 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC---CCCCCCCc------cceeEEEEEEEECCEEEEEEEEeCCch------------H
Confidence 45677889999999998665432 11100000 001 1122233322 23457798763 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~ 242 (553)
.+..........+|.+++|+|+.+.. ..++..+.... ...|+++|+||+|+.+... .......+. ..
T Consensus 62 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------~~ 135 (163)
T cd01860 62 RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYA------DE 135 (163)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHH------HH
Confidence 34444445567899999999998753 12223333322 2468999999999874322 222222222 12
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHh
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.+ ..++.+||++|.|++++++.|.+.
T Consensus 136 ~~-~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 136 NG-LLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred cC-CEEEEEECCCCCCHHHHHHHHHHH
Confidence 23 458999999999999999888654
No 155
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.53 E-value=2.1e-07 Score=94.24 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=97.6
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCC-CccCCCccccHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNG-GYAGGKQFVSADEL 171 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~v-gf~~~~~~~l~e~~ 171 (553)
+|..+|+-..|++++|........ =+.+-.|.|+ .++=+-....+-+++++|++|+. |..... -.
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl-------~~VPG~l~Y~ga~IQild~Pgii~gas~g~------gr 130 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTL-------EPVPGMLEYKGAQIQLLDLPGIIEGASSGR------GR 130 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCc-cccccCceec-------ccccceEeecCceEEEEcCcccccCcccCC------CC
Confidence 788889999999999976544211 1122347777 66667777877889999998763 111110 00
Q ss_pred HHHHHHhhhcccEEEEEcccCCCCh----------------------------------------------hhHHHHH--
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNG----------------------------------------------SFLARIR-- 203 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~----------------------------------------------s~~~~l~-- 203 (553)
-+++-.++..||+|++|+|+..... ..+..+.
T Consensus 131 G~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~E 210 (365)
T COG1163 131 GRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILRE 210 (365)
T ss_pred cceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHH
Confidence 0112233568899999999863221 0011110
Q ss_pred --------------------HHh-C---CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccCh
Q 008807 204 --------------------DLA-G---ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGI 259 (553)
Q Consensus 204 --------------------~~~-~---~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi 259 (553)
+.+ + -+|.++|+||+|+...+ ....+.+. .+++++||++++|+
T Consensus 211 y~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e-~~~~l~~~------------~~~v~isa~~~~nl 277 (365)
T COG1163 211 YRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE-ELERLARK------------PNSVPISAKKGINL 277 (365)
T ss_pred hCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH-HHHHHHhc------------cceEEEecccCCCH
Confidence 000 1 26889999999998743 22222111 47899999999999
Q ss_pred hhhHHHHHHhhcccceE
Q 008807 260 VGVASEIQKEKKGRDVY 276 (553)
Q Consensus 260 ~~Ll~~L~~~~~g~~v~ 276 (553)
++|.+.|.+.+.-.++|
T Consensus 278 d~L~e~i~~~L~liRVY 294 (365)
T COG1163 278 DELKERIWDVLGLIRVY 294 (365)
T ss_pred HHHHHHHHHhhCeEEEE
Confidence 99999998765433443
No 156
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.53 E-value=1.2e-06 Score=81.41 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=90.2
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
..++..+|...+|++++++.... |.+.+..-.+. ..+.....+...+. ...++||+|.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~---~~~~~~~~~t~-----~~~~~~~~~~~~~~~~~~~~~D~~g~------------ 66 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQ---GLFPPGQGATI-----GVDFMIKTVEIKGEKIKLQIWDTAGQ------------ 66 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHh---CCCCCCCCCce-----eeEEEEEEEEECCEEEEEEEEECCCc------------
Confidence 35788899999999999987542 11211110000 00233333333332 2456788763
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhC-CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAG-ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~-~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
+.+.......+..+|++++|+|+++.+. .+...+..... ..|+++|+||+|+...........+.+ . ..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~----~-~~ 141 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEF----S-DA 141 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH----H-HH
Confidence 3444445566778999999999987531 22333333222 578899999999875432222211111 1 11
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.. ..++.+||++|.|++++++.|.+
T Consensus 142 ~~-~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 142 QD-MYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred cC-CeEEEeeCCCCCCHHHHHHHHHH
Confidence 12 45789999999999999988865
No 157
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.53 E-value=4.1e-07 Score=85.19 Aligned_cols=147 Identities=15% Similarity=0.101 Sum_probs=85.9
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|...+|++++++....+. ..|.+.. .+.....+...+. ...++||+|...|..
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~-----------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------- 63 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-----------FDHYAVSVTVGGKQYLLGLYDTAGQEDYDR------- 63 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-----------eeeeEEEEEECCEEEEEEEEeCCCcccccc-------
Confidence 35677899999999998654321 1222211 0111122222221 245789987543321
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCCh-------------hh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDF-------------NC 229 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~-------------~~ 229 (553)
.-......+|++++|+|+.+... .+...+.....+.|+++|+||+||.+..... ..
T Consensus 64 -----~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 138 (174)
T cd04135 64 -----LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQ 138 (174)
T ss_pred -----cccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHH
Confidence 11123568899999999987532 2333343333568999999999986542111 11
Q ss_pred HHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 230 VGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+ .+.++...++.+||+++.|++++++.+.+
T Consensus 139 ~~~~------~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 139 GQKL------AKEIGAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHH------HHHcCCCEEEEecCCcCCCHHHHHHHHHH
Confidence 1111 12344346789999999999999988754
No 158
>PTZ00258 GTP-binding protein; Provisional
Probab=98.52 E-value=1.2e-07 Score=100.34 Aligned_cols=60 Identities=27% Similarity=0.258 Sum_probs=44.7
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee-c------------------C
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF-L------------------G 331 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~-~------------------~ 331 (553)
.+..+.+||.||||||||+|+|.+. ++.++++|+||+++..-... . .
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~--------------~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~a 85 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQ--------------QVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPA 85 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcC--------------cccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCC
Confidence 3458999999999999999999653 34578899999875442211 1 1
Q ss_pred CcEEEEcCCccCC
Q 008807 332 GGKLYDTPGVHLH 344 (553)
Q Consensus 332 ~~~liDTPGi~~~ 344 (553)
...++||||+...
T Consensus 86 qi~lvDtpGLv~g 98 (390)
T PTZ00258 86 QLDITDIAGLVKG 98 (390)
T ss_pred CeEEEECCCcCcC
Confidence 2579999999753
No 159
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.52 E-value=3.6e-07 Score=85.60 Aligned_cols=148 Identities=11% Similarity=-0.003 Sum_probs=85.4
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEE-EEecC--CccEEEecCCCCCccCCCccccHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGR-CRLLS--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~R-c~~l~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
++..+|...+|+.+++++.-.. .|. .....|. ...+... +.... ....++||+|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~--~~~-~~~~~t~------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------- 61 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTG--EFE-KKYVATL------GVEVHPLDFHTNRGKIRFNVWDTAGQEK----------- 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCC-CCCCCce------eeEEEEEEEEECCEEEEEEEEECCCChh-----------
Confidence 4567788999999999875321 111 1100010 0111111 11111 2356889987421
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccC
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLN 244 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~ 244 (553)
+..........+|.+|+|+|+.+... .+...+.....+.|+++|.||+|+..... .....++. .. .
T Consensus 62 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~------~~-~ 132 (166)
T cd00877 62 -FGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV-KAKQITFH------RK-K 132 (166)
T ss_pred -hccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccC-CHHHHHHH------HH-c
Confidence 11112223458999999999987531 23344444444799999999999973332 11111221 11 2
Q ss_pred ceeEEEeccCCccChhhhHHHHHHh
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...++.+||++|.|++++++.|.+.
T Consensus 133 ~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 133 NLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred CCEEEEEeCCCCCChHHHHHHHHHH
Confidence 2468899999999999999988754
No 160
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.51 E-value=5.7e-07 Score=83.01 Aligned_cols=147 Identities=16% Similarity=0.081 Sum_probs=87.2
Q ss_pred ccccCCCcccccCccccccCCCCC--cccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAP--GYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~--GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++...|..++|++++++....... -|.+. . ..+....+..... ....++||+|.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~l~D~~g~------------ 59 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAAT-----I-----GVDFKVKTLTVDGKKVKLAIWDTAGQ------------ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCc-----c-----cceEEEEEEEECCEEEEEEEEECCCc------------
Confidence 456778999999999976653211 01110 0 0012222232222 23568899763
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
+.+........+.+|.+++|+|+.+.. ..+...+.... .+.|+++|+||+|+.......+...++. .
T Consensus 60 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~----~-- 133 (161)
T cd01863 60 ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA----R-- 133 (161)
T ss_pred hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH----H--
Confidence 233333344567899999999998753 12233333332 3578999999999974443333333322 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+ ..++.+||++|.|++++++.+.+
T Consensus 134 ~~~-~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 134 KHN-MLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred HcC-CEEEEEecCCCCCHHHHHHHHHH
Confidence 123 45889999999999999888764
No 161
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.51 E-value=8.6e-07 Score=99.36 Aligned_cols=157 Identities=16% Similarity=0.044 Sum_probs=89.6
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELRE 173 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~ 173 (553)
+.+.|..++||+++++........ .|...++...+.+.........+....++||+|. +.|..
T Consensus 3 I~iiG~~d~GKTTLi~aLtg~~~d-----~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh------------e~f~~ 65 (581)
T TIGR00475 3 IATAGHVDHGKTTLLKALTGIAAD-----RLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH------------EKFIS 65 (581)
T ss_pred EEEECCCCCCHHHHHHHHhCccCc-----CChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH------------HHHHH
Confidence 456788899999999876532111 1110001011112222233333445679999873 45555
Q ss_pred HHHHhhhcccEEEEEcccCCCCh-hhHHHH--HHHhCCCC-EEEEEEcccCCCCCCChhhHHHHHHHHHhhcccC-ceeE
Q 008807 174 KLSHLRREKALIVKLVDIVDFNG-SFLARI--RDLAGANP-IILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLN-VLSV 248 (553)
Q Consensus 174 ~l~~~~~~adlIl~VVD~~d~~~-s~~~~l--~~~~~~~p-vIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~-~~~v 248 (553)
.+......+|++++|||+.+... ...+.+ ... .+.| +++|+||+|+.+.+. .+...+.+.+.+....+. ...+
T Consensus 66 ~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi~~iIVVlNK~Dlv~~~~-~~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 66 NAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGIPHTIVVITKADRVNEEE-IKRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred HHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEECCCCCCHHH-HHHHHHHHHHHHHHhCCCCCCcE
Confidence 55555678999999999987421 111121 222 2456 999999999985431 111222222222222221 2568
Q ss_pred EEeccCCccChhhhHHHHHHh
Q 008807 249 HLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~ 269 (553)
+.+||++|.|++++.+.|.+.
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHH
Confidence 999999999999998877653
No 162
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.50 E-value=1.7e-07 Score=90.46 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=39.5
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee--cCCcEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF--LGGGKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~--~~~~~liDTPGi~~~ 344 (553)
+++++|.||||||||+|+|++...... ....+|+|++....... .....|+||||+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~------------~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~ 62 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFES------------KLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDT 62 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCcccc------------ccCCCCcccccceeeEEECCeEEEEEECcCCCCc
Confidence 689999999999999999998633210 11245677754332221 123469999999765
No 163
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.50 E-value=1.1e-06 Score=85.62 Aligned_cols=149 Identities=13% Similarity=0.048 Sum_probs=86.6
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
+-.+|....|+.+.++....+. |. ...-.|. ..+.....+...+ ....+.||+|- +.|
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~--f~-~~~~~Ti-----~~~~~~~~i~~~~~~v~l~iwDtaGq------------e~~ 62 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDT--FC-EACKSGV-----GVDFKIKTVELRGKKIRLQIWDTAGQ------------ERF 62 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCC--CC-CcCCCcc-----eeEEEEEEEEECCEEEEEEEEeCCCc------------hhh
Confidence 4456788889999887654321 11 1100010 0022223333332 23468899873 345
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcccC
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKKLN 244 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~l~ 244 (553)
+.......+.+|.+|+|+|+++.. ..+...+.... .+.|+++|.||+||...... .....+|. .+..+
T Consensus 63 ~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a-----~~~~~ 137 (202)
T cd04120 63 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFA-----QQITG 137 (202)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HhcCC
Confidence 555556678999999999999854 12233333322 35799999999999643321 12222221 11112
Q ss_pred ceeEEEeccCCccChhhhHHHHHH
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..++.+||++|.|++++++.|.+
T Consensus 138 -~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 138 -MRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred -CEEEEecCCCCCCHHHHHHHHHH
Confidence 35789999999999999887764
No 164
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.50 E-value=7.3e-07 Score=84.33 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=84.5
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|....|++++++..-.+ .|.. ..-.|. .+..+..+...+. ...+.||+|. +.
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~--~f~~-~~~~t~------~~~~~~~~~~~~~~~~l~i~Dt~G~------------~~ 61 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTN--AFPG-EYIPTV------FDNYSANVMVDGKPVNLGLWDTAGQ------------ED 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCC-cCCCcc------eeeeEEEEEECCEEEEEEEEECCCc------------hh
Confidence 4556788888999998643321 1111 000011 1222223333222 3468999874 22
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCCh-------------hhHH
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDF-------------NCVG 231 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~-------------~~~~ 231 (553)
+..........+|.+|+|+|+.+... .+...+.....+.|+++|.||+||.+..... +...
T Consensus 62 ~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 62 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHH
Confidence 32223334678999999999988541 1222233323468999999999996432111 1111
Q ss_pred HHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 232 DWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 232 ~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
++ .+.++...++.+||++|.|++++++.+.+
T Consensus 142 ~~------~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 142 AM------AKEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HH------HHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 11 12234346789999999999999888754
No 165
>PRK00089 era GTPase Era; Reviewed
Probab=98.49 E-value=1.7e-07 Score=96.07 Aligned_cols=59 Identities=37% Similarity=0.366 Sum_probs=44.1
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~~ 344 (553)
..++++|.||||||||+|+|++. .-..+++.|+||++.+.-....+ ...++||||+..+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~-------------~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ-------------KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKP 66 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-------------ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCc
Confidence 36899999999999999999975 12357788999997554332222 3468999999754
No 166
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.49 E-value=1.2e-06 Score=87.15 Aligned_cols=147 Identities=16% Similarity=0.078 Sum_probs=87.8
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|..+.|+.++++..-.+. .-|.+. .+ +..+......+ ....+.||+|.
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pT-i~----------~~~~~~i~~~~~~v~l~iwDTaG~------------ 71 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPT-VF----------ENYTAGLETEEQRVELSLWDTSGS------------ 71 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcCCc-ee----------eeeEEEEEECCEEEEEEEEeCCCc------------
Confidence 67788999999999998654321 112211 00 11111122221 23568899874
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCC-------------CCChhh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPK-------------GTDFNC 229 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~-------------~~~~~~ 229 (553)
+.|..........+|++|+|.|+++... .|...+.......|+|||.||+||... ....+.
T Consensus 72 e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e 151 (232)
T cd04174 72 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQ 151 (232)
T ss_pred hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHH
Confidence 3444444445679999999999987541 233444444456799999999998532 111122
Q ss_pred HHHHHHHHHhhcccCceeEEEeccCCcc-ChhhhHHHHHH
Q 008807 230 VGDWVVEATTKKKLNVLSVHLTSSKSLA-GIVGVASEIQK 268 (553)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~vi~iSAk~g~-gi~~Ll~~L~~ 268 (553)
..+|. ..++....+.+||++|. |+++++..+.+
T Consensus 152 ~~~~a------~~~~~~~~~EtSAktg~~~V~e~F~~~~~ 185 (232)
T cd04174 152 GCALA------KQLGAEVYLECSAFTSEKSIHSIFRSASL 185 (232)
T ss_pred HHHHH------HHcCCCEEEEccCCcCCcCHHHHHHHHHH
Confidence 22221 22343346789999997 89999887754
No 167
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.49 E-value=1.3e-07 Score=95.94 Aligned_cols=56 Identities=29% Similarity=0.261 Sum_probs=40.9
Q ss_pred eEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-ecC------------------CcEE
Q 008807 275 VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-FLG------------------GGKL 335 (553)
Q Consensus 275 v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~~~------------------~~~l 335 (553)
+.+||.||||||||+|+|.+. ...++++|+||+++..-.. ..+ ...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~--------------~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~l 66 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKA--------------GAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEF 66 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCC--------------CCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEE
Confidence 468999999999999999875 2246788999987543111 111 2579
Q ss_pred EEcCCccCC
Q 008807 336 YDTPGVHLH 344 (553)
Q Consensus 336 iDTPGi~~~ 344 (553)
+||||+...
T Consensus 67 vD~pGl~~~ 75 (274)
T cd01900 67 VDIAGLVKG 75 (274)
T ss_pred EECCCcCCC
Confidence 999999754
No 168
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.48 E-value=1.4e-06 Score=86.05 Aligned_cols=115 Identities=14% Similarity=0.055 Sum_probs=69.4
Q ss_pred EEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhh--hcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEE
Q 008807 141 CRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLR--REKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVT 216 (553)
Q Consensus 141 c~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~--~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlN 216 (553)
|...++...++||||.. .|.+.....+ ..+|++++|+|+.+........+..++ .+.|+++|+|
T Consensus 79 ~~~~~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvN 146 (224)
T cd04165 79 CEKSSKLVTFIDLAGHE------------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVT 146 (224)
T ss_pred eeeCCcEEEEEECCCcH------------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEE
Confidence 34445667899998852 2322222223 268999999998765443333333222 3689999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHhh-----------------------cccCceeEEEeccCCccChhhhHHHHHH
Q 008807 217 KVDLLPKGTDFNCVGDWVVEATTK-----------------------KKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 217 KiDLl~~~~~~~~~~~~~~~~~~~-----------------------~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
|+|+++++. .....+.+.+.+.. ......+++.+||.+|.|+++|.+.|..
T Consensus 147 K~D~~~~~~-~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 147 KIDLAPANI-LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred CccccCHHH-HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 999976432 22222222222211 0111347899999999999999887753
No 169
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.48 E-value=8.3e-07 Score=84.06 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=85.2
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|....|+.++++..-.+. .-|.+. . .+.....+...+ ....+.||+|..
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt-----~------~~~~~~~~~~~~~~~~l~i~Dt~G~~----------- 60 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPT-----V------FDNYAVTVMIGGEPYTLGLFDTAGQE----------- 60 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-----e------eeeeEEEEEECCEEEEEEEEECCCcc-----------
Confidence 35567777888888887654321 112111 1 122233333332 234688998752
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHH---------HH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVG---------DW 233 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~---------~~ 233 (553)
.+..........+|++++|+|+++... .+...+.....+.|+|+|.||+||.......+.+. +.
T Consensus 61 -~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~ 139 (175)
T cd01874 61 -DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPET 139 (175)
T ss_pred -chhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHH
Confidence 222222234568999999999987531 13333433334689999999999865421110000 00
Q ss_pred HHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 234 VVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 234 ~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
. +.+ ....+...++.+||++|.|++++++.+.+
T Consensus 140 ~-~~~-a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 140 G-EKL-ARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred H-HHH-HHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 0 001 11233346789999999999999887754
No 170
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.48 E-value=1.3e-06 Score=85.93 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=70.6
Q ss_pred cCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC--------hhhHHH-
Q 008807 131 HQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN--------GSFLAR- 201 (553)
Q Consensus 131 ~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~--------~s~~~~- 201 (553)
+-+++.....+...++...++||+|.. .|.......+..+|++|+|||+.+.. ......
T Consensus 62 g~T~d~~~~~~~~~~~~i~liDtpG~~------------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~ 129 (219)
T cd01883 62 GVTIDVGLAKFETEKYRFTILDAPGHR------------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA 129 (219)
T ss_pred ccCeecceEEEeeCCeEEEEEECCChH------------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH
Confidence 344567777777777778999998742 23333444566899999999998731 111111
Q ss_pred -HHHHhCCCCEEEEEEcccCCCCCCC---hhhHHHHHHHHHhhcccC--ceeEEEeccCCccChh
Q 008807 202 -IRDLAGANPIILVVTKVDLLPKGTD---FNCVGDWVVEATTKKKLN--VLSVHLTSSKSLAGIV 260 (553)
Q Consensus 202 -l~~~~~~~pvIlVlNKiDLl~~~~~---~~~~~~~~~~~~~~~~l~--~~~vi~iSAk~g~gi~ 260 (553)
+....+.+|+++|+||+|+...... ...+.+.+...+...++. ...++.+||++|.|++
T Consensus 130 ~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 130 LLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1122244688999999999843211 122222222122222221 1458999999999986
No 171
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.48 E-value=6.9e-07 Score=83.68 Aligned_cols=151 Identities=14% Similarity=0.108 Sum_probs=83.2
Q ss_pred cCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHHHHH
Q 008807 96 SAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADELRE 173 (553)
Q Consensus 96 ~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~~~~ 173 (553)
.+|....|+++++++..... | +.....+. .+.........+. ...+.||+|... +..
T Consensus 3 i~G~~~vGKTsli~~~~~~~--~-~~~~~~~~------~~~~~~~~~~~~~~~~~~i~Dt~G~~~------------~~~ 61 (174)
T smart00174 3 VVGDGAVGKTCLLISYTTNA--F-PEDYVPTV------FENYSADVEVDGKPVELGLWDTAGQED------------YDR 61 (174)
T ss_pred EECCCCCCHHHHHHHHHhCC--C-CCCCCCcE------EeeeeEEEEECCEEEEEEEEECCCCcc------------cch
Confidence 45777888999887654321 1 11100000 1222222222222 356889987422 222
Q ss_pred HHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHH--------HHHHHHHh
Q 008807 174 KLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVG--------DWVVEATT 239 (553)
Q Consensus 174 ~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~--------~~~~~~~~ 239 (553)
........+|++|+|+|+.+... .+...+.....+.|+++|.||+|+.+.......+. .-....+
T Consensus 62 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~- 140 (174)
T smart00174 62 LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEAL- 140 (174)
T ss_pred hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHH-
Confidence 22234568999999999987531 13333433335789999999999975321110000 0000011
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
....+....+.+||+++.|++++++.+.+
T Consensus 141 ~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 141 AKRIGAVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred HHHcCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 12234346789999999999999988765
No 172
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.48 E-value=1.2e-06 Score=84.49 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=84.7
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
+..+|..++|+.++++..-... +....-.+. .+.....+...+ ....++||+|.. .+
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~---~~~~~~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~------------~~ 60 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDT---FEPKYRRTV------EEMHRKEYEVGGVSLTLDILDTSGSY------------SF 60 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCC---CCccCCCch------hhheeEEEEECCEEEEEEEEECCCch------------hh
Confidence 4567888999999997653321 111110011 012222333322 235688998742 22
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccC
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLN 244 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~ 244 (553)
.........++|++++|+|+.+.. ..+...+.... .+.|+++|+||+|+.+....... .... +.. ....+
T Consensus 61 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~-~~~~-~~~-~~~~~ 137 (198)
T cd04147 61 PAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA-KDAL-STV-ELDWN 137 (198)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccH-HHHH-HHH-HhhcC
Confidence 222233467899999999998743 11222333322 35899999999999764221111 1111 001 11112
Q ss_pred ceeEEEeccCCccChhhhHHHHHHh
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..++.+||++|.|++++++.|.+.
T Consensus 138 -~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 138 -CGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred -CcEEEecCCCCCCHHHHHHHHHHH
Confidence 346789999999999999988753
No 173
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.47 E-value=1.8e-07 Score=98.06 Aligned_cols=58 Identities=28% Similarity=0.230 Sum_probs=42.9
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEE-eecC------------------Cc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQID-AFLG------------------GG 333 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~-~~~~------------------~~ 333 (553)
.++.+||.||||||||+|+|.+. ++.++++|+||+++..-. ...+ ..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~--------------~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i 68 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKA--------------GAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATI 68 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC--------------CCeecccccccccceEEEEEeccccchhhHHhcCCccccCceE
Confidence 36899999999999999999874 235788999998754211 1111 25
Q ss_pred EEEEcCCccCC
Q 008807 334 KLYDTPGVHLH 344 (553)
Q Consensus 334 ~liDTPGi~~~ 344 (553)
.++||||+...
T Consensus 69 ~lvD~pGL~~~ 79 (364)
T PRK09601 69 EFVDIAGLVKG 79 (364)
T ss_pred EEEECCCCCCC
Confidence 79999999753
No 174
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.47 E-value=1.9e-06 Score=80.27 Aligned_cols=148 Identities=16% Similarity=0.105 Sum_probs=87.2
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceE-EEEEEecC--CccEEEecCCCCCccCCCccccHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVL-CGRCRLLS--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~i-c~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
++..+|...+|+.++++..... -|.+... .|. .... .......+ ....+.||+|. +
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~--~~~~~~~-~t~------~~~~~~~~~~~~~~~~~l~i~Dt~G~------------~ 62 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEK--KFMADCP-HTI------GVEFGTRIIEVNGQKIKLQIWDTAGQ------------E 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCCCCC-ccc------ceeEEEEEEEECCEEEEEEEEECCCc------------H
Confidence 4667788889999999876532 2221110 000 0111 12222222 13467899763 3
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~ 242 (553)
.+........+.+|.+|+|+|+.+... .++..+.... ...|+++|.||+||..... ..+...++. ..
T Consensus 63 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~------~~ 136 (166)
T cd04122 63 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA------DE 136 (166)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH------HH
Confidence 444445555679999999999998541 2222232221 2468999999999975432 223333332 11
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+ ..++.+||++|.|+++++..+..
T Consensus 137 ~~-~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 137 NG-LLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred cC-CEEEEEECCCCCCHHHHHHHHHH
Confidence 22 35789999999999998877654
No 175
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.47 E-value=6.5e-07 Score=80.79 Aligned_cols=155 Identities=15% Similarity=0.046 Sum_probs=84.5
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++...|...+|++++++...... .+.....+. ..+.....+...+ ....++||+|...|. .....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----~~~~~ 69 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK---FITEYKPGT-----TRNYVTTVIEEDGKTYKFNLLDTAGQEDYR-----AIRRL 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CcCcCCCCc-----eeeeeEEEEEECCEEEEEEEEECCCcccch-----HHHHH
Confidence 56778999999999998766532 111111010 1133333344433 446789998742211 11112
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhC-CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEE
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAG-ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVH 249 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~-~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi 249 (553)
+.......+...|++++|+|+.+....+...+..... +.|+++|+||+|+..... ....... + ...+...++
T Consensus 70 ~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~----~--~~~~~~~~~ 142 (161)
T TIGR00231 70 YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKL-KTHVAFL----F--AKLNGEPII 142 (161)
T ss_pred HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchh-hHHHHHH----H--hhccCCceE
Confidence 2222222233445555555554433344444444434 679999999999976431 1111111 1 122334589
Q ss_pred EeccCCccChhhhHHHHH
Q 008807 250 LTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 250 ~iSAk~g~gi~~Ll~~L~ 267 (553)
.+||+++.|++++.+.|.
T Consensus 143 ~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 143 PLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EeecCCCCCHHHHHHHhh
Confidence 999999999999887764
No 176
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.46 E-value=1.3e-06 Score=83.91 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=87.9
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|..+.|+.++++..-.+. | +...-.|. .+.....+...+ ....+.||+|. +.
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~--f-~~~~~~t~------~~~~~~~~~~~~~~~~l~i~Dt~G~------------e~ 63 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNA--F-PKEYIPTV------FDNYSAQTAVDGRTVSLNLWDTAGQ------------EE 63 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--C-CcCCCCce------EeeeEEEEEECCEEEEEEEEECCCc------------hh
Confidence 56778889999999997654321 1 11110111 022222232222 23568999874 34
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhh--------HHHHHHH
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDFNC--------VGDWVVE 236 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~--------~~~~~~~ 236 (553)
++..-......+|.+|+|+|+.+... .+...+.....+.|+++|.||+||......... +.....+
T Consensus 64 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 64 YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHH
Confidence 44333444678999999999987541 122333333356899999999999543210000 0000000
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.+ ....+....+.+||++|.|++++++.|.+.
T Consensus 144 ~~-a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~ 175 (191)
T cd01875 144 AL-AKQIHAVKYLECSALNQDGVKEVFAEAVRA 175 (191)
T ss_pred HH-HHHcCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 01 112332457899999999999998887653
No 177
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.46 E-value=1.9e-06 Score=86.54 Aligned_cols=148 Identities=11% Similarity=-0.023 Sum_probs=85.8
Q ss_pred ccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|....|+.++++..-.. ...|.+. . .+.........+ ....++||+|..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pT-----i------~d~~~k~~~i~~~~~~l~I~Dt~G~~----------- 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPT-----I------EDFHRKLYSIRGEVYQLDILDTSGNH----------- 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCC-----h------hHhEEEEEEECCEEEEEEEEECCCCh-----------
Confidence 3566788899999999876321 1122221 1 122222222222 234689998742
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHH----------hCCCCEEEEEEcccCCCC-CCChhhHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDL----------AGANPIILVVTKVDLLPK-GTDFNCVGD 232 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~----------~~~~pvIlVlNKiDLl~~-~~~~~~~~~ 232 (553)
.|...-......+|++|+|+|+.+.. ..+...+... ..+.|+|+|+||+||... ....+.+.+
T Consensus 60 -~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~ 138 (247)
T cd04143 60 -PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQ 138 (247)
T ss_pred -hhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHH
Confidence 22222222345889999999998753 1222333221 135799999999999752 222233333
Q ss_pred HHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 233 WVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 233 ~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
++ .... ...++.+||+++.|++++++.|.+.
T Consensus 139 ~~-----~~~~-~~~~~evSAktg~gI~elf~~L~~~ 169 (247)
T cd04143 139 LV-----GGDE-NCAYFEVSAKKNSNLDEMFRALFSL 169 (247)
T ss_pred HH-----HhcC-CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 22 1111 2457899999999999999988763
No 178
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.45 E-value=1.9e-06 Score=79.54 Aligned_cols=147 Identities=18% Similarity=0.069 Sum_probs=87.9
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|...+|++++++..-... +.|.+.- ..+.....+...+ ....++||+|.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~l~D~~G~------------ 59 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTI----------GVEFGSKIIRVGGKRVKLQIWDTAGQ------------ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce----------eeeEEEEEEEECCEEEEEEEEECcch------------
Confidence 35677889999999998764321 1111110 0012222333322 23468899763
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~ 241 (553)
+.+..........+|.+++|+|+.+.. ..++..+.... .+.|+++|+||+|+..... .......+. .
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------~ 133 (161)
T cd04113 60 ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFA------Q 133 (161)
T ss_pred HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHH------H
Confidence 334444445567899999999998743 12333333222 3678999999999975432 122222222 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+ ..++.+||+++.|++++++.+.+
T Consensus 134 ~~~-~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 134 ENG-LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HcC-CEEEEEECCCCCCHHHHHHHHHH
Confidence 223 56899999999999999888764
No 179
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.45 E-value=7.8e-07 Score=83.63 Aligned_cols=155 Identities=14% Similarity=0.013 Sum_probs=86.5
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~ 166 (553)
|+..++..+|..+.|++++++..-... |.+.+...|. ..+....-....+. ...+.||+|...|.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~~~~~~~T~-----~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------ 68 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FSLNAYSPTI-----KPRYAVNTVEVYGQEKYLILREVGEDEVAI------ 68 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CCcccCCCcc-----CcceEEEEEEECCeEEEEEEEecCCccccc------
Confidence 345578889999999999998765432 2101110011 00111111222222 23566776642221
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCChhhHH--HHHHHh---CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhh
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNGSFLA--RIRDLA---GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTK 240 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~--~l~~~~---~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~ 240 (553)
........++|++++|+|++++. ++.. .+.... .+.|+++|+||+||.+.... .....++ .
T Consensus 69 ------~~~~~~~~~~d~~llv~d~~~~~-s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~------~ 135 (169)
T cd01892 69 ------LLNDAELAACDVACLVYDSSDPK-SFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEF------C 135 (169)
T ss_pred ------ccchhhhhcCCEEEEEEeCCCHH-HHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHH------H
Confidence 11122246899999999998753 2221 222211 35899999999999654311 1112222 1
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
+.++...++.+||+++.|++++++.|.+.
T Consensus 136 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 164 (169)
T cd01892 136 RKLGLPPPLHFSSKLGDSSNELFTKLATA 164 (169)
T ss_pred HHcCCCCCEEEEeccCccHHHHHHHHHHH
Confidence 22333345889999999999998888653
No 180
>PTZ00369 Ras-like protein; Provisional
Probab=98.45 E-value=1.5e-06 Score=83.17 Aligned_cols=147 Identities=17% Similarity=0.119 Sum_probs=87.5
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|...+|+.++++..-.+. ..|.+. ..+...+.+..... ...++||+|..
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------- 64 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPT-----------IEDSYRKQCVIDEETCLLDILDTAGQE---------- 64 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCcCCc-----------hhhEEEEEEEECCEEEEEEEEeCCCCc----------
Confidence 467788999999999987544321 111111 01233344444332 24578998742
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATT 239 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~ 239 (553)
.+..........+|.+++|+|+++... .+...+.... .+.|+++|.||+|+..... .......+.
T Consensus 65 --~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~----- 137 (189)
T PTZ00369 65 --EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA----- 137 (189)
T ss_pred --cchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----
Confidence 222223344668999999999987541 2223333322 2569999999999854321 112222221
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..++ ..++.+||+++.|++++++.|.+
T Consensus 138 -~~~~-~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 138 -KSFG-IPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred -HHhC-CEEEEeeCCCCCCHHHHHHHHHH
Confidence 1223 35789999999999998888764
No 181
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.45 E-value=2.7e-07 Score=81.03 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=78.9
Q ss_pred EEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChh
Q 008807 149 MITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFN 228 (553)
Q Consensus 149 ~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~ 228 (553)
..+||+|. | .........|.....++|+|++|-.+.|+...+.+.+..+ ..+|+|-|++|+||.. +.+.+
T Consensus 40 ~~IDTPGE--y------~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~-~~k~vIgvVTK~DLae-d~dI~ 109 (148)
T COG4917 40 GDIDTPGE--Y------FEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDI-GVKKVIGVVTKADLAE-DADIS 109 (148)
T ss_pred cccCCchh--h------hhhhHHHHHHHHHhhccceeeeeecccCccccCCcccccc-cccceEEEEecccccc-hHhHH
Confidence 36788875 2 2234455556666779999999999988877777777665 5678999999999985 34577
Q ss_pred hHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 229 CVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+.|+.+ .+..+|+.+|+.++.|+++|.+.|..
T Consensus 110 ~~~~~L~e------aGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 110 LVKRWLRE------AGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHH------cCCcceEEEeccCcccHHHHHHHHHh
Confidence 78888754 23467999999999999999988764
No 182
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.45 E-value=3.4e-07 Score=93.72 Aligned_cols=73 Identities=21% Similarity=0.365 Sum_probs=45.3
Q ss_pred hhhhHHHHHHhh-cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEE
Q 008807 259 IVGVASEIQKEK-KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKL 335 (553)
Q Consensus 259 i~~Ll~~L~~~~-~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~l 335 (553)
+-+++..|.+.. ...+++++|.+||||||++|+|++... ..+|+.+++|........... ...|
T Consensus 24 l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v-------------~~vs~f~s~t~~~~~~~~~~~G~~l~V 90 (313)
T TIGR00991 24 LLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERI-------------ATVSAFQSEGLRPMMVSRTRAGFTLNI 90 (313)
T ss_pred HHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCc-------------ccccCCCCcceeEEEEEEEECCeEEEE
Confidence 344444444332 334899999999999999999998632 234555555443322221112 3469
Q ss_pred EEcCCccCC
Q 008807 336 YDTPGVHLH 344 (553)
Q Consensus 336 iDTPGi~~~ 344 (553)
|||||+...
T Consensus 91 IDTPGL~d~ 99 (313)
T TIGR00991 91 IDTPGLIEG 99 (313)
T ss_pred EECCCCCch
Confidence 999999754
No 183
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.45 E-value=2e-06 Score=78.77 Aligned_cols=147 Identities=17% Similarity=0.076 Sum_probs=86.7
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
+...|...+|+.+++++.-... +.......+ .+.........+ ....++|++|. +.+
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~------------~~~ 60 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGT--FVEEYDPTI-------EDSYRKTIVVDGETYTLDILDTAGQ------------EEF 60 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCcCcCCCh-------hHeEEEEEEECCEEEEEEEEECCCh------------HHH
Confidence 4567888899999987654321 211111111 133333444331 34567898763 224
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC--CCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhccc
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG--ANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKKL 243 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~--~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~l 243 (553)
.......+.++|++++|+|..+.. ..+...+..... ..|+++|+||+|+..... ..+....+. ...
T Consensus 61 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~ 134 (160)
T cd00876 61 SAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA------KEW 134 (160)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH------HHc
Confidence 444455567899999999998753 122222333223 689999999999976321 122222221 122
Q ss_pred CceeEEEeccCCccChhhhHHHHHH
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
+ ..++.+||+++.|++++++.|.+
T Consensus 135 ~-~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 135 G-CPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred C-CcEEEeccCCCCCHHHHHHHHHh
Confidence 2 45789999999999999988764
No 184
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.45 E-value=2.4e-06 Score=79.49 Aligned_cols=149 Identities=13% Similarity=0.038 Sum_probs=85.2
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
+..+|...+|+.++++..-.. -|.+. ...|. ..+.....+...+ ....+.||+|. +.+
T Consensus 3 i~vvG~~~~GKTsli~~~~~~--~~~~~-~~~t~-----~~~~~~~~~~~~~~~~~l~i~D~~g~------------~~~ 62 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDN--EFHSS-HISTI-----GVDFKMKTIEVDGIKVRIQIWDTAGQ------------ERY 62 (161)
T ss_pred EEEECcCCCCHHHHHHHHhcC--CCCCC-CCCce-----eeEEEEEEEEECCEEEEEEEEeCCCc------------HhH
Confidence 456788899999998654321 12111 11111 0011222333322 13467898763 234
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC-CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCc
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG-ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNV 245 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~-~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~ 245 (553)
..........+|.+++|+|+.+.. ..++..+..... +.|+++|.||+||.............+. +..+
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~- 136 (161)
T cd04117 63 QTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLA-----KEYG- 136 (161)
T ss_pred HhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH-----HHcC-
Confidence 444445567899999999998753 223333333332 5789999999999654321111111111 1223
Q ss_pred eeEEEeccCCccChhhhHHHHHH
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+.+||+++.|+++++..|.+
T Consensus 137 ~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 137 MDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHh
Confidence 45789999999999999888764
No 185
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.44 E-value=6.3e-07 Score=83.38 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=85.2
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEec--CCccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLL--SHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l--~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|...+|++++++..-... .+|.+... +......... .....++||+|...|.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~D~~g~~~~~-------- 62 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-----------DNYSATVTVDGKQVNLGLWDTAGQEEYD-------- 62 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-----------eeeEEEEEECCEEEEEEEEeCCCccccc--------
Confidence 35567888899999987655432 23332211 1111111111 1235689998753221
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCChh-------hH-HHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDFN-------CV-GDWV 234 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~-------~~-~~~~ 234 (553)
.+ .......+|++++|+|+.+... .++..+.....+.|+++|+||+|+........ .+ .+..
T Consensus 63 -~~---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~ 138 (171)
T cd00157 63 -RL---RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEG 138 (171)
T ss_pred -cc---chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHH
Confidence 11 1122368899999999987431 12233333334689999999999986542210 00 0101
Q ss_pred HHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 235 VEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 235 ~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+. ....+...++.+||+++.|++++++.|.+
T Consensus 139 ~~~--~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 139 EKL--AKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHH--HHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 111 12233346899999999999999887753
No 186
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.44 E-value=2e-06 Score=80.93 Aligned_cols=150 Identities=14% Similarity=0.047 Sum_probs=87.2
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|...+|+.++++..-.+. |. .....|. ..+....+....+ ....+.||+|. +.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~-~~~~~t~-----~~~~~~~~~~~~~~~~~l~i~Dt~G~------------~~ 61 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FD-KNYKATI-----GVDFEMERFEILGVPFSLQLWDTAGQ------------ER 61 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC-CCCCCce-----eeEEEEEEEEECCEEEEEEEEeCCCh------------HH
Confidence 35567888999999998665431 11 1111111 0122223333322 24578899763 34
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCC---hhhHHHHHHHHHhh
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGTD---FNCVGDWVVEATTK 240 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~---~~~~~~~~~~~~~~ 240 (553)
+.........++|++++|+|+.+.. ..++..+.... ...|+++|.||+||.+.... ......+.
T Consensus 62 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~------ 135 (170)
T cd04108 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA------ 135 (170)
T ss_pred HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH------
Confidence 4444455577999999999998742 12233332211 12468999999998654321 11111221
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..++ ..++.+||+++.|++++++.|.+.
T Consensus 136 ~~~~-~~~~e~Sa~~g~~v~~lf~~l~~~ 163 (170)
T cd04108 136 AEMQ-AEYWSVSALSGENVREFFFRVAAL 163 (170)
T ss_pred HHcC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 1223 356889999999999999888654
No 187
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.43 E-value=1.7e-06 Score=82.61 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=88.9
Q ss_pred ccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~ 166 (553)
..++..+|....|+.++++..-.+. ..|.+. . .+.....+...+. ...+.||+|.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT-----~------~~~~~~~~~~~~~~~~l~iwDtaG~---------- 63 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT-----V------FENYTASFEIDTQRIELSLWDTSGS---------- 63 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCc-----e------eeeeEEEEEECCEEEEEEEEECCCc----------
Confidence 3467888999999999998654321 112111 1 0122222322222 3468899863
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCC------hhhHHHHHHHhCCCCEEEEEEcccCCCC-----------C--CCh
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFN------GSFLARIRDLAGANPIILVVTKVDLLPK-----------G--TDF 227 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~------~s~~~~l~~~~~~~pvIlVlNKiDLl~~-----------~--~~~ 227 (553)
+.+..........+|.+++|+|+++.. ..+.+.+.....+.|++||.||+||... . ...
T Consensus 64 --e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~ 141 (182)
T cd04172 64 --PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSY 141 (182)
T ss_pred --hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCH
Confidence 344444444567899999999998753 1233344444456899999999998532 0 111
Q ss_pred hhHHHHHHHHHhhcccCceeEEEeccCCccC-hhhhHHHHHH
Q 008807 228 NCVGDWVVEATTKKKLNVLSVHLTSSKSLAG-IVGVASEIQK 268 (553)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~g-i~~Ll~~L~~ 268 (553)
+...++. ...+....+.+||+++.| +++++..+.+
T Consensus 142 ~~~~~~a------~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 142 DQGANMA------KQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHHHHH------HHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 2222221 223433578899999998 9998877654
No 188
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.42 E-value=3.3e-07 Score=95.86 Aligned_cols=57 Identities=32% Similarity=0.318 Sum_probs=43.4
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-ecC--CcEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-FLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~~~--~~~liDTPGi~~~ 344 (553)
+|.+||.||||||||||+|... ++.++++|+||+++..-.. +.+ ...++||||+...
T Consensus 160 dVglVG~PNaGKSTLln~ls~a--------------~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAA--------------KPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcC--------------CCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 7999999999999999999753 3457889999998543222 212 3579999999643
No 189
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.42 E-value=2.7e-06 Score=81.13 Aligned_cols=147 Identities=17% Similarity=0.101 Sum_probs=87.2
Q ss_pred ccccCCCcccccCccccccCCCCC--cccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAP--GYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~--GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|....|++++++....... .|.+.. ..+.....+...+. ...++||+|.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~i~Dt~g~------------ 59 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTI----------GVDFKIKTVYIENKIIKLQIWDTNGQ------------ 59 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce----------eeEEEEEEEEECCEEEEEEEEECCCc------------
Confidence 456778889999999987653211 121110 00222233333332 2357898763
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~ 241 (553)
+.+........+.+|.+++|+|+.+... .++..+.... ...|+++|+||+|+..... .......+. .
T Consensus 60 ~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~------~ 133 (188)
T cd04125 60 ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFC------D 133 (188)
T ss_pred HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHH------H
Confidence 2344444555678999999999987531 2233333332 2468999999999874432 122222221 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+ ..++.+||+++.|++++++.|.+
T Consensus 134 ~~~-~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 134 SLN-IPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred HcC-CeEEEEeCCCCCCHHHHHHHHHH
Confidence 223 26789999999999998887764
No 190
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.42 E-value=9.6e-07 Score=86.91 Aligned_cols=148 Identities=13% Similarity=0.008 Sum_probs=87.7
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEec--CCccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLL--SHGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l--~~~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|....|+.++++..-.+. .-|.+ |. + -+..-...... .....++||+|..
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-----ti---g--~~~~~~~~~~~~~~~~l~i~Dt~G~~---------- 73 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----TI---G--VEVHPLDFFTNCGKIRFYCWDTAGQE---------- 73 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCC-----cc---c--eeEEEEEEEECCeEEEEEEEECCCch----------
Confidence 478888999999999998632111 11111 11 0 01111111111 1245688998742
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.|..........+|.+|+|+|+++.. ..+...+.....+.|+++|.||+||.........+ .+. ..
T Consensus 74 --~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~----~~-- 144 (219)
T PLN03071 74 --KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFH----RK-- 144 (219)
T ss_pred --hhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHH----Hh--
Confidence 23333334456889999999998753 13344444444578999999999996443222222 221 11
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHh
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.+ ...+.+||++|.|+++++..|.+.
T Consensus 145 ~~-~~~~e~SAk~~~~i~~~f~~l~~~ 170 (219)
T PLN03071 145 KN-LQYYEISAKSNYNFEKPFLYLARK 170 (219)
T ss_pred cC-CEEEEcCCCCCCCHHHHHHHHHHH
Confidence 12 356889999999999998887653
No 191
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.41 E-value=1.9e-06 Score=83.68 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=69.1
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCCCCEEEEEEcccCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGANPIILVVTKVDLL 221 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~~pvIlVlNKiDLl 221 (553)
...+.||+|- +.|..........+|.+|+|+|+++.. ..+...+.....+.|+++|.||+||.
T Consensus 45 ~l~iwDt~G~------------e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 45 RFNVWDTAGQ------------EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred EEEEEECCCc------------hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 4568899874 344444445567899999999999753 13444455444568999999999986
Q ss_pred CCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 222 PKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
......+. ..+. ...+ ...+.+||++|.|++++++.|.+.
T Consensus 113 ~~~v~~~~-~~~~------~~~~-~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 113 DRKVKAKS-ITFH------RKKN-LQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred cccCCHHH-HHHH------HHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 43322211 1221 1222 357899999999999999888653
No 192
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.41 E-value=9.4e-07 Score=95.63 Aligned_cols=159 Identities=11% Similarity=0.034 Sum_probs=90.0
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCch-----------------hhH-------hhhccCccceEEEEEEecCCc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDT-----------------YEL-------KKKHHQFKTVLCGRCRLLSHG 147 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~-----------------f~t-------~~~~~~~rd~ic~Rc~~l~~~ 147 (553)
..+..+|-..+|+++++...-- ..|.+.... |+. .++.+-+++.....+...++.
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~-~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~ 85 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLY-ETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYY 85 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHH-HcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeE
Confidence 4677888889999988765542 133332210 111 012234456666666666677
Q ss_pred cEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCC--CChhhH-H--HHHHHhCCCCEEEEEEcccCCC
Q 008807 148 HMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVD--FNGSFL-A--RIRDLAGANPIILVVTKVDLLP 222 (553)
Q Consensus 148 ~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d--~~~s~~-~--~l~~~~~~~pvIlVlNKiDLl~ 222 (553)
..++||+|... |...+...+..+|++++|+|+.+ ...... . .+....+..++++|+||+|+..
T Consensus 86 i~liDtpG~~~------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 86 FTIVDCPGHRD------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred EEEEECCCccc------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 88999998532 22222233568999999999987 221111 1 1122223346899999999975
Q ss_pred CCCC-hhhHHHHHHHHHhhcccC--ceeEEEeccCCccChhhhH
Q 008807 223 KGTD-FNCVGDWVVEATTKKKLN--VLSVHLTSSKSLAGIVGVA 263 (553)
Q Consensus 223 ~~~~-~~~~~~~~~~~~~~~~l~--~~~vi~iSAk~g~gi~~Ll 263 (553)
.+.. .....+.+.+.+...++. ...++.+||++|.|++++.
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 3211 111122222222222221 2468999999999998754
No 193
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.41 E-value=2.3e-06 Score=82.35 Aligned_cols=150 Identities=16% Similarity=0.082 Sum_probs=91.3
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++..+|....|+.++++....+. |..+.. .+. ..+.........+ ....+.||+|. +
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~--~~~~~~-~t~-----~~~~~~~~i~~~~~~~~l~iwDt~G~------------~ 66 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGS--TESPYG-YNM-----GIDYKTTTILLDGRRVKLQLWDTSGQ------------G 66 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCCC-Ccc-----eeEEEEEEEEECCEEEEEEEEeCCCc------------H
Confidence 467788888999999987654321 111100 000 0011112222222 23467899763 3
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCCCCEEEEEEcccCCCCC-CChhhHHHHHHHHHhhccc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGANPIILVVTKVDLLPKG-TDFNCVGDWVVEATTKKKL 243 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~~pvIlVlNKiDLl~~~-~~~~~~~~~~~~~~~~~~l 243 (553)
.+.........++|.+|+|+|+++.. ..+++.+.......|+|||.||+||.... ...+...+|. ...
T Consensus 67 ~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a------~~~ 140 (189)
T cd04121 67 RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYA------ERN 140 (189)
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHH------HHc
Confidence 45444555567999999999998754 23445554444568999999999996432 1233333442 122
Q ss_pred CceeEEEeccCCccChhhhHHHHHH
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
+ ...+.+||++|.|++++++.|.+
T Consensus 141 ~-~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 141 G-MTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred C-CEEEEecCCCCCCHHHHHHHHHH
Confidence 3 35789999999999999888764
No 194
>PRK15494 era GTPase Era; Provisional
Probab=98.41 E-value=3.5e-07 Score=96.03 Aligned_cols=58 Identities=33% Similarity=0.379 Sum_probs=43.1
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.++++|.+|||||||+|+|++.. ...+|+.|+||++.+.-....++ ..++||||+..+
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k-------------~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEK-------------LSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc-------------eeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 79999999999999999999651 23577889999975542222222 458999999643
No 195
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.41 E-value=1.1e-06 Score=83.51 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=86.7
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
+..+|....|++++++..-.+. |. .+.-.|. .+....++...+ ....+.||+|.. .+
T Consensus 4 ivv~G~~~vGKTsli~~~~~~~--f~-~~~~~Ti------~~~~~~~~~~~~~~v~l~i~Dt~G~~------------~~ 62 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTSNK--FP-TDYIPTV------FDNFSANVSVDGNTVNLGLWDTAGQE------------DY 62 (176)
T ss_pred EEEECCCCCcHHHHHHHHhcCC--CC-CCCCCcc------eeeeEEEEEECCEEEEEEEEECCCCc------------cc
Confidence 4566777788888887654321 21 1110111 122223333322 234688998753 22
Q ss_pred HHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCC-----------CChhhHHHHH
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKG-----------TDFNCVGDWV 234 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~-----------~~~~~~~~~~ 234 (553)
..........+|.+|+|.|+.+... .++..+.....+.|++||.||+||.+.. ...+...+|.
T Consensus 63 ~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 63 NRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 2223334678999999999987531 2344444433568999999999996532 1112222221
Q ss_pred HHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 235 VEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 235 ~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+....+.+||+++.|++++++.+.+.
T Consensus 143 ------~~~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 143 ------KQIGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred ------HHcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 22332347899999999999999888753
No 196
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.40 E-value=8.8e-07 Score=83.27 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=83.5
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
+...|...+|+.+++++.-.+ .|..... .| ..+.....+...+. ...++||+|... +
T Consensus 3 ~~i~G~~~~GKtsl~~~~~~~--~~~~~~~-~t------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------------~ 61 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTN--GYPTEYV-PT------AFDNFSVVVLVDGKPVRLQLCDTAGQDE------------F 61 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhC--CCCCCCC-Cc------eeeeeeEEEEECCEEEEEEEEECCCChh------------h
Confidence 456677888888888665321 2322110 00 01222223333322 346899987532 2
Q ss_pred HHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCC-------------ChhhHHH
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGT-------------DFNCVGD 232 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-------------~~~~~~~ 232 (553)
..........+|.+|+|+|+.+... .++..+.....+.|+++|.||+||.+... .......
T Consensus 62 ~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 62 DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHH
Confidence 2222234568999999999987541 23333433334689999999999965321 0111112
Q ss_pred HHHHHHhhcccCceeEEEeccCCccChhhhHHHH
Q 008807 233 WVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEI 266 (553)
Q Consensus 233 ~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L 266 (553)
+ ....+...++.+||+++.|++++++.+
T Consensus 142 ~------a~~~~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 142 L------AEKIGACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred H------HHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 2 122343468899999999999998765
No 197
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.40 E-value=3.2e-07 Score=99.98 Aligned_cols=56 Identities=32% Similarity=0.295 Sum_probs=42.8
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee--cCCcEEEEcCCccC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF--LGGGKLYDTPGVHL 343 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~--~~~~~liDTPGi~~ 343 (553)
+|.+||.||||||||||+|... ++.++++|+||+++..-... .....|+||||+..
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~a--------------kpkIadypfTTl~P~lGvv~~~~~~f~laDtPGlie 218 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAA--------------KPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIP 218 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcC--------------CccccccCcccccceEEEEEECCeEEEEEECCCCcc
Confidence 7999999999999999999863 34568899999975432221 12356999999864
No 198
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.40 E-value=4.4e-06 Score=78.77 Aligned_cols=148 Identities=16% Similarity=0.078 Sum_probs=86.1
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|..+.|+.++++..-... | +...-.|. .+..-..+...+. ...++||+|. +.
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~--f-~~~~~~t~------~~~~~~~~~~~~~~~~l~i~Dt~G~------------~~ 62 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHS--F-PDYHDPTI------EDAYKQQARIDNEPALLDILDTAGQ------------AE 62 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--C-CCCcCCcc------cceEEEEEEECCEEEEEEEEeCCCc------------hh
Confidence 56778889999999986543211 1 11100011 1122223333332 3467899764 23
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKK 242 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~ 242 (553)
+..........+|.+++|+|+.+... .+...+.... .+.|+++|.||+|+..... ..+...++. ..
T Consensus 63 ~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a------~~ 136 (172)
T cd04141 63 FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLA------RE 136 (172)
T ss_pred hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHH------HH
Confidence 44444445668999999999987541 1222333322 3589999999999864321 112222221 12
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+ ..++.+||+++.|++++++.|.+
T Consensus 137 ~~-~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 137 FN-CPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred hC-CEEEEEecCCCCCHHHHHHHHHH
Confidence 23 35789999999999999887764
No 199
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.40 E-value=3.5e-06 Score=78.95 Aligned_cols=150 Identities=15% Similarity=0.103 Sum_probs=86.2
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++..+|....|+.++++..-. |..+...-.+. ..+.....+...+ ....++||+|. +
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~---~~~~~~~~~t~-----~~~~~~~~~~~~~~~~~~~i~Dt~G~------------~ 62 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCA---GRFPERTEATI-----GVDFRERTVEIDGERIKVQLWDTAGQ------------E 62 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHh---CCCCCccccce-----eEEEEEEEEEECCeEEEEEEEeCCCh------------H
Confidence 4677889999999999987542 22211110010 0022223333333 24568899763 3
Q ss_pred HHHH-HHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhh
Q 008807 170 ELRE-KLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTK 240 (553)
Q Consensus 170 ~~~~-~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~ 240 (553)
.++. ......+.+|.+++|+|+.+.. ..+...+.... .+.|+++|+||+|+...... .....++.
T Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------ 136 (170)
T cd04115 63 RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA------ 136 (170)
T ss_pred HHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH------
Confidence 3432 3445567899999999998753 12233333222 35799999999998644321 11122221
Q ss_pred cccCceeEEEeccCC---ccChhhhHHHHHH
Q 008807 241 KKLNVLSVHLTSSKS---LAGIVGVASEIQK 268 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~---g~gi~~Ll~~L~~ 268 (553)
...+ ..++.+||++ +.++++++..+.+
T Consensus 137 ~~~~-~~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 137 DAHS-MPLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred HHcC-CcEEEEeccCCcCCCCHHHHHHHHHH
Confidence 1122 4578899999 7788887776654
No 200
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.39 E-value=4.2e-07 Score=84.60 Aligned_cols=55 Identities=33% Similarity=0.382 Sum_probs=38.8
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-ec-C-CcEEEEcCCcc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-FL-G-GGKLYDTPGVH 342 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~~-~-~~~liDTPGi~ 342 (553)
+++++|.+|||||||+|+|.+. ...++..|++|+++..-.. .. . ...++||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~--------------~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNA--------------KPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcC--------------CccccCCCccccCCcceEEEcCCCCeEEEEecCccc
Confidence 5899999999999999999853 2235667888875422111 11 1 34699999985
No 201
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.39 E-value=1.3e-06 Score=81.72 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=81.4
Q ss_pred ccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 95 NSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 95 ~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
..+|...+|+.++++...... ..|.+..-+ + ...+........++||+|.. .++
T Consensus 3 ~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~----------~--~~~i~~~~~~l~i~Dt~G~~------------~~~ 58 (164)
T cd04162 3 LVLGLDGAGKTSLLHSLSSERSLESVVPTTGF----------N--SVAIPTQDAIMELLEIGGSQ------------NLR 58 (164)
T ss_pred EEECCCCCCHHHHHHHHhcCCCcccccccCCc----------c--eEEEeeCCeEEEEEECCCCc------------chh
Confidence 456788899999887665321 222222111 1 11222333456788998742 233
Q ss_pred HHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHH---hCCCCEEEEEEcccCCCCCCChhhHHHHH-HHHHhhcccCce
Q 008807 173 EKLSHLRREKALIVKLVDIVDFN--GSFLARIRDL---AGANPIILVVTKVDLLPKGTDFNCVGDWV-VEATTKKKLNVL 246 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~---~~~~pvIlVlNKiDLl~~~~~~~~~~~~~-~~~~~~~~l~~~ 246 (553)
......++.+|.+++|+|+++.. ......+..+ ..+.|+++|.||+|+.... ....+.+.+ ...+. ...+ .
T Consensus 59 ~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~-~~~~-~ 135 (164)
T cd04162 59 KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR-SVQEIHKELELEPIA-RGRR-W 135 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC-CHHHHHHHhCChhhc-CCCc-e
Confidence 33344567899999999998854 1111222222 2468999999999985432 222211111 00111 1122 3
Q ss_pred eEEEeccCC------ccChhhhHHHHH
Q 008807 247 SVHLTSSKS------LAGIVGVASEIQ 267 (553)
Q Consensus 247 ~vi~iSAk~------g~gi~~Ll~~L~ 267 (553)
.++.+||++ +.|++++++.+-
T Consensus 136 ~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 136 ILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 467788887 889988877653
No 202
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.39 E-value=4.6e-06 Score=79.74 Aligned_cols=165 Identities=18% Similarity=0.066 Sum_probs=91.8
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCcccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l 167 (553)
...++.++|...+|++++++..-... +.|.+ .... +++ +.. ........++||+|.. .. ..+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~-~~~~-------t~~--~~~-~~~~~~l~l~DtpG~~-~~-~~~~~~ 89 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSK-TPGR-------TQL--INF-FEVNDKLRLVDLPGYG-YA-KVSKEE 89 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC-CCCc-------eeE--EEE-EecCCeEEEeCCCCCC-Cc-CCCchH
Confidence 44578999999999999998776431 11111 1000 011 111 1223567899998742 11 111111
Q ss_pred HHHHHHHHHHhhh---cccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 168 ADELREKLSHLRR---EKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 168 ~e~~~~~l~~~~~---~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.+.+...+...+. ..+++++|+|+.+........+...+ .+.|+++|+||+|++.... .....+.+.+.+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~i~~~l~~~- 167 (196)
T PRK00454 90 KEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGE-RKKQLKKVRKALKFG- 167 (196)
T ss_pred HHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHH-HHHHHHHHHHHHHhc-
Confidence 3344333333332 34688899998764322211222211 3578999999999975432 122112221211111
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
...++.+||+++.|++++++.|.+.++
T Consensus 168 --~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 168 --DDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred --CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 246789999999999999999887654
No 203
>PLN03110 Rab GTPase; Provisional
Probab=98.39 E-value=3.5e-06 Score=82.63 Aligned_cols=151 Identities=17% Similarity=0.058 Sum_probs=90.3
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++..+|..+.|++++++..... .|... .-.|. ..+.....+...+. ...++||+|. +
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~--~~~~~-~~~t~-----g~~~~~~~v~~~~~~~~l~l~Dt~G~------------~ 72 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRN--EFCLE-SKSTI-----GVEFATRTLQVEGKTVKAQIWDTAGQ------------E 72 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCC-CCCce-----eEEEEEEEEEECCEEEEEEEEECCCc------------H
Confidence 47888999999999999765432 11110 00000 00222233333222 3467798763 3
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~ 242 (553)
.+........+.++.+|+|+|+.+... .++..+.... .+.|+++|+||+||...... ......+ . ..
T Consensus 73 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l-----~-~~ 146 (216)
T PLN03110 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQAL-----A-EK 146 (216)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHH-----H-HH
Confidence 455555666778999999999987531 2333333332 25799999999998643321 1122221 1 12
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHh
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.+ ..++.+||+++.|++++++.|.+.
T Consensus 147 ~~-~~~~e~SA~~g~~v~~lf~~l~~~ 172 (216)
T PLN03110 147 EG-LSFLETSALEATNVEKAFQTILLE 172 (216)
T ss_pred cC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 23 468899999999999998887643
No 204
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.38 E-value=3.7e-07 Score=96.15 Aligned_cols=56 Identities=30% Similarity=0.233 Sum_probs=42.6
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeec-C--CcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFL-G--GGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~-~--~~~liDTPGi~ 342 (553)
.+++++|.||||||||+|+|.+.. ..+++.||||+|+..-.... + ...|+||||+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~--------------~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~ 248 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD--------------VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFI 248 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc--------------eeeccCCccccCCEEEEEEeCCCceEEEEecCccc
Confidence 579999999999999999999751 24567889999875433322 2 24699999984
No 205
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.37 E-value=5.6e-07 Score=99.38 Aligned_cols=58 Identities=28% Similarity=0.337 Sum_probs=45.6
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.+++++|.||||||||+|+|.+. +..+++|||+|.+.-+-.....+ ..++|.||+.+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~--------------~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL 63 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA--------------NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSL 63 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc--------------CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCC
Confidence 36999999999999999999985 33589999999875554433333 479999999654
No 206
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.36 E-value=2e-06 Score=87.92 Aligned_cols=159 Identities=13% Similarity=0.159 Sum_probs=96.8
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEE-ecCCccEEEecCCCCCccCCC--ccccH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCR-LLSHGHMITAVGGNGGYAGGK--QFVSA 168 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~-~l~~~~~~~dTaG~vgf~~~~--~~~l~ 168 (553)
..|-+++.-++|++++|...+..+|--. +=.|.|+ .+.-+-.. ...+.+.+-|.+|+ |... -.-+-
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIa-dYpFTTL-------~PnLGvV~~~~~~sfv~ADIPGL---IEGAs~G~GLG 228 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIA-DYPFTTL-------VPNLGVVRVDGGESFVVADIPGL---IEGASEGVGLG 228 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCccc-CCccccc-------cCcccEEEecCCCcEEEecCccc---ccccccCCCcc
Confidence 3888999999999999998887665422 2237777 34334343 34455667777654 3321 11234
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh--------hhHHHHHHH---hCCCCEEEEEEcccCCCCCCChhhHHHHHHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG--------SFLARIRDL---AGANPIILVVTKVDLLPKGTDFNCVGDWVVEA 237 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~--------s~~~~l~~~---~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~ 237 (553)
..|.+.+ +..-+++||||++..+. .+..+|... +.++|.++|+||+|+.-..+..+.+.+.+.
T Consensus 229 ~~FLrHI----ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~-- 302 (369)
T COG0536 229 LRFLRHI----ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA-- 302 (369)
T ss_pred HHHHHHH----HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH--
Confidence 5664443 45679999999985431 222333322 357899999999996544333333333321
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.........+|||.+++|+++|+..+.+.+
T Consensus 303 ---~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 303 ---EALGWEVFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred ---HhcCCCcceeeehhcccCHHHHHHHHHHHH
Confidence 112212222399999999999988876543
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.36 E-value=3.1e-06 Score=95.33 Aligned_cols=110 Identities=14% Similarity=0.058 Sum_probs=67.7
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHH---HHHHhCCCCEEEEEEcccCCCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLAR---IRDLAGANPIILVVTKVDLLPK 223 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~---l~~~~~~~pvIlVlNKiDLl~~ 223 (553)
...++||+|. +.|...+......+|++++|||+.+.......+ +....+..++|+|+||+|+.++
T Consensus 52 ~i~~IDtPGh------------e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 52 VLGFIDVPGH------------EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDE 119 (614)
T ss_pred EEEEEECCCH------------HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCH
Confidence 4578999873 445555555567899999999998643221111 1122233336799999999754
Q ss_pred CCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 224 GTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
+. ...+.+-+.+.+...++....++.+||++|.|+++|++.|.+.
T Consensus 120 ~~-~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 120 AR-IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred HH-HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 31 2212222222222223333568999999999999999998764
No 208
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2.6e-06 Score=90.56 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=108.9
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
+....++++|..|.|++++|+....+..--+.+.. +.+||.+.--....+....++||||+.. +.....+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-------GTTRDaiea~v~~~G~~v~L~DTAGiRe---~~~~~iE 335 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-------GTTRDAIEAQVTVNGVPVRLSDTAGIRE---ESNDGIE 335 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-------CcchhhheeEeecCCeEEEEEecccccc---ccCChhH
Confidence 34468999999999999999988776554444322 3456888888888888899999999853 1112222
Q ss_pred HHHHHHHHHhhhcccEEEEEccc--CCCChhh--HHHHHHHh----------CCCCEEEEEEcccCCCCCCChhh-HHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDI--VDFNGSF--LARIRDLA----------GANPIILVVTKVDLLPKGTDFNC-VGDW 233 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~--~d~~~s~--~~~l~~~~----------~~~pvIlVlNKiDLl~~~~~~~~-~~~~ 233 (553)
..-.++....++.||+|++|||+ .++.... ...+.... ..+++++|.||+|+.++-..... ...|
T Consensus 336 ~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~ 415 (531)
T KOG1191|consen 336 ALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVY 415 (531)
T ss_pred HHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceec
Confidence 22345666777899999999999 5554322 22222210 23789999999999877321111 1111
Q ss_pred HHHHHhhcccCcee-EEEeccCCccChhhhHHHHHHhh
Q 008807 234 VVEATTKKKLNVLS-VHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 234 ~~~~~~~~~l~~~~-vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.. ..+....+ +.++|++++.|++.|.+.|.+.+
T Consensus 416 ~~----~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 416 PS----AEGRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred cc----cccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 10 01122233 44599999999999988887643
No 209
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.34 E-value=5.9e-07 Score=96.51 Aligned_cols=56 Identities=29% Similarity=0.248 Sum_probs=42.7
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-e--cCCcEEEEcCCccC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-F--LGGGKLYDTPGVHL 343 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~--~~~~~liDTPGi~~ 343 (553)
+|.+||.||||||||||+|... ++.++++|+||+.+.--.. + .....|+||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~a--------------k~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNA--------------KPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcC--------------CCccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 7999999999999999999863 3457789999997533221 1 12457999999964
No 210
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.34 E-value=2.7e-06 Score=92.42 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=70.2
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCC--ChhhHHHH--HHHhCCCCEEEEEEcccCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDF--NGSFLARI--RDLAGANPIILVVTKVDLL 221 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~--~~s~~~~l--~~~~~~~pvIlVlNKiDLl 221 (553)
+...++||+|. +.|.+.+...+..+|.+++|||+.+. .....+.+ ...++-+++|+|+||+|+.
T Consensus 117 ~~i~~IDtPGH------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 117 RHVSFVDCPGH------------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLV 184 (460)
T ss_pred ceEeeeeCCCH------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEeccccc
Confidence 45678999862 45555555556689999999999873 22222222 2233556789999999998
Q ss_pred CCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 222 PKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
+.+...... +.+.+.+.........++.+||++|.|++.|++.|.+..
T Consensus 185 ~~~~~~~~~-~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 185 KEAQAQDQY-EEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred CHHHHHHHH-HHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 543211111 112221111112235799999999999999999887533
No 211
>PLN03118 Rab family protein; Provisional
Probab=98.34 E-value=2.7e-06 Score=82.96 Aligned_cols=150 Identities=14% Similarity=-0.002 Sum_probs=88.1
Q ss_pred cccccCCCcccccCccccccCCCCC-cccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAP-GYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~-GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
.++..+|...+|+.++++..-.... .|.+. . ..+.....+...+ ....++||+|.
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t-----~-----~~~~~~~~~~~~~~~~~l~l~Dt~G~------------ 72 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVEDLAPT-----I-----GVDFKIKQLTVGGKRLKLTIWDTAGQ------------ 72 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCcCCC-----c-----eeEEEEEEEEECCEEEEEEEEECCCc------------
Confidence 3778889999999999976543211 11111 0 0022233333322 24578999874
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----h-hHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----S-FLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATT 239 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s-~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~ 239 (553)
+.|.......+..+|.+|+|+|+.+... . +...+.... ...|+++|.||+|+...... ......+.
T Consensus 73 ~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~----- 147 (211)
T PLN03118 73 ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA----- 147 (211)
T ss_pred hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----
Confidence 2333334445678999999999987531 1 111121111 24689999999999754321 11111111
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+.+
T Consensus 148 -~~~~-~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 148 -KEHG-CLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred -HHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1122 3578999999999999999887654
No 212
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.34 E-value=4.3e-06 Score=81.74 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=87.6
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec-C--CccEEEecCCCCCccCCCccccHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL-S--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
++..+|....|+.++++...... |..... .|. ..+.....+... + ....+.||+|. +
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~~--~~~~~~-~ti-----~~d~~~~~i~~~~~~~~~l~i~Dt~G~------------~ 63 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEGR--FAEVSD-PTV-----GVDFFSRLIEIEPGVRIKLQLWDTAGQ------------E 63 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCCC-cee-----ceEEEEEEEEECCCCEEEEEEEeCCcc------------h
Confidence 56788999999999998765321 111100 000 012222333222 1 23568899763 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC--CCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG--ANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKK 241 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~--~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~ 241 (553)
.+.........++|.+|+|+|+.+.. ..++..+..... ..|+++|.||+|+..... ..+...++. +
T Consensus 64 ~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~------~ 137 (211)
T cd04111 64 RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA------K 137 (211)
T ss_pred hHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH------H
Confidence 33333444567899999999998853 123333333222 356789999999976432 122222221 2
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+ ..++.+||+++.|++++++.|.+
T Consensus 138 ~~~-~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 138 DLG-MKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred HhC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence 233 45789999999999999988765
No 213
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.34 E-value=3.5e-06 Score=78.73 Aligned_cols=149 Identities=11% Similarity=0.073 Sum_probs=87.0
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|...+|+.+.++....+. |... .-.+ ..+...+.+..... ...++||+|.. .
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~--~~~~-~~~t------~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------~ 61 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV--FIES-YDPT------IEDSYRKQVEIDGRQCDLEILDTAGTE------------Q 61 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCcc-cCCc------chheEEEEEEECCEEEEEEEEeCCCcc------------c
Confidence 45678889999999988754321 1111 0001 11233334444322 34688998753 2
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKK 242 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~ 242 (553)
|..........++.+++|+|+.+.. ..+...+.... .+.|+++|+||+|+.+.... .+....+ ...
T Consensus 62 ~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~------~~~ 135 (168)
T cd04177 62 FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSL------SQQ 135 (168)
T ss_pred chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHH------HHH
Confidence 3333334456788999999988743 22233333322 35899999999999754321 1111122 112
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+...++.+||+++.|++++++.+.+
T Consensus 136 ~~~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 136 WGNVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred cCCceEEEeeCCCCCCHHHHHHHHHH
Confidence 23245789999999999999888864
No 214
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.33 E-value=1.7e-06 Score=82.59 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=86.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|..++|++++++... .|++++..-.+ ..+.....+...+ ....+.||+|...|..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~---~~~~~~~~~~t------~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------- 64 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFT---LGEFPEEYHPT------VFENYVTDCRVDGKPVQLALWDTAGQEEYER--------- 64 (187)
T ss_pred EEEEECCCCCCHHHHHHHHH---hCCCCcccCCc------ccceEEEEEEECCEEEEEEEEECCCChhccc---------
Confidence 56788999999999998764 23333211111 1122222333222 1245779876532211
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCC------hhhHHHHHHHhCCCCEEEEEEcccCCCCCCCh-----hhHHHHHHHHHh
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFN------GSFLARIRDLAGANPIILVVTKVDLLPKGTDF-----NCVGDWVVEATT 239 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~------~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~-----~~~~~~~~~~~~ 239 (553)
+. ......+|.++++.|+.+.. ..+...+.....+.|+++|.||+|+.+..... ............
T Consensus 65 ~~---~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 65 LR---PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred cc---hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHH
Confidence 11 11235789999999887643 12334444333568999999999986432110 000000000011
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.+.++....+.+||++|.|++++++.+.+.
T Consensus 142 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 142 AKEIGAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred HHHhCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 123444467899999999999999888753
No 215
>PRK04213 GTP-binding protein; Provisional
Probab=98.33 E-value=6.7e-07 Score=86.20 Aligned_cols=53 Identities=34% Similarity=0.466 Sum_probs=41.4
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGV 341 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi 341 (553)
.+++++|.+|||||||+|+|.+.. ..++..||+|++...+.. .+..++||||+
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~--------------~~~~~~~~~t~~~~~~~~--~~~~l~Dt~G~ 62 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKK--------------VRVGKRPGVTRKPNHYDW--GDFILTDLPGF 62 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--------------CccCCCCceeeCceEEee--cceEEEeCCcc
Confidence 479999999999999999998641 124567899997655542 35779999997
No 216
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=5.5e-06 Score=78.26 Aligned_cols=121 Identities=22% Similarity=0.225 Sum_probs=83.7
Q ss_pred ceEEEEEEecCCcc--EEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC
Q 008807 135 TVLCGRCRLLSHGH--MITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG 207 (553)
Q Consensus 135 d~ic~Rc~~l~~~~--~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~ 207 (553)
|-+..+..+.++.. ++.|||| .|.|+..+..++.+++++|.|.|+.|-+ ..|++.++..-+
T Consensus 58 DFlskt~~l~d~~vrLQlWDTAG------------QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~g 125 (221)
T KOG0094|consen 58 DFLSKTMYLEDRTVRLQLWDTAG------------QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERG 125 (221)
T ss_pred EEEEEEEEEcCcEEEEEEEeccc------------HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccC
Confidence 55667777776643 6889987 6899999999999999999999999754 234444443322
Q ss_pred C--CCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhccc
Q 008807 208 A--NPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGR 273 (553)
Q Consensus 208 ~--~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g~ 273 (553)
. .-++||.||.||+++..-.. .+- ....+.++. ..+.+||+.|.|+.+|+..|...+++.
T Consensus 126 s~~viI~LVGnKtDL~dkrqvs~--eEg---~~kAkel~a-~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 126 SDDVIIFLVGNKTDLSDKRQVSI--EEG---ERKAKELNA-EFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCceEEEEEcccccccchhhhhH--HHH---HHHHHHhCc-EEEEecccCCCCHHHHHHHHHHhccCc
Confidence 2 34788999999997642110 110 011233443 567899999999999998887665543
No 217
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=2.1e-06 Score=81.23 Aligned_cols=119 Identities=21% Similarity=0.183 Sum_probs=81.7
Q ss_pred ceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC
Q 008807 135 TVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG 207 (553)
Q Consensus 135 d~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~ 207 (553)
|..-+-+.+.+. ..++.|||| ++.|+.......+.|+-||+|.|+++-. ..|+.++...+.
T Consensus 45 Df~~rt~e~~gk~iKlQIWDTAG------------QERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~ 112 (205)
T KOG0084|consen 45 DFKIRTVELDGKTIKLQIWDTAG------------QERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS 112 (205)
T ss_pred EEEEEEeeecceEEEEEeeeccc------------cHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc
Confidence 444445554433 346889986 5889999999999999999999998632 456667766654
Q ss_pred -CCCEEEEEEcccCCCCCCCh-hhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 208 -ANPIILVVTKVDLLPKGTDF-NCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 208 -~~pvIlVlNKiDLl~~~~~~-~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
+.|++||.||+|+.....-. +..+++ ...++....+.+|||++.++++.+..|...++
T Consensus 113 ~~v~~lLVGNK~Dl~~~~~v~~~~a~~f------a~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 113 ENVPKLLVGNKCDLTEKRVVSTEEAQEF------ADELGIPIFLETSAKDSTNVEDAFLTLAKELK 172 (205)
T ss_pred CCCCeEEEeeccccHhheecCHHHHHHH------HHhcCCcceeecccCCccCHHHHHHHHHHHHH
Confidence 45999999999997654321 212222 12233233788999999999988877765443
No 218
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.32 E-value=3.8e-06 Score=79.89 Aligned_cols=149 Identities=13% Similarity=0.038 Sum_probs=85.9
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|..+.|+.++++....+. | +...-.|. .+.....+...+. ...+.||+|. +.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~--f-~~~~~~t~------~~~~~~~~~~~~~~~~l~iwDt~G~------------~~ 61 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDC--Y-PETYVPTV------FENYTASFEIDEQRIELSLWDTSGS------------PY 61 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--C-CCCcCCce------EEEEEEEEEECCEEEEEEEEECCCc------------hh
Confidence 46677888999999998654321 1 11110011 0222223333222 3468899874 23
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCC-------------CChhhHH
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKG-------------TDFNCVG 231 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~-------------~~~~~~~ 231 (553)
+..........+|.+|+|.|+++... .+...+.....+.|+++|.||+||.+.. ...+...
T Consensus 62 ~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 62 YDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred hhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHH
Confidence 33333334678999999999987541 2333444444568999999999985420 1111122
Q ss_pred HHHHHHHhhcccCceeEEEeccCCccC-hhhhHHHHHH
Q 008807 232 DWVVEATTKKKLNVLSVHLTSSKSLAG-IVGVASEIQK 268 (553)
Q Consensus 232 ~~~~~~~~~~~l~~~~vi~iSAk~g~g-i~~Ll~~L~~ 268 (553)
+|. ...+....+.+||++|.+ +++++..+.+
T Consensus 142 ~~a------~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 142 AIA------KQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHH------HHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 221 223433568899999995 9998877654
No 219
>PRK11058 GTPase HflX; Provisional
Probab=98.31 E-value=6.1e-07 Score=96.82 Aligned_cols=56 Identities=25% Similarity=0.199 Sum_probs=41.4
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee-cC--CcEEEEcCCccC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF-LG--GGKLYDTPGVHL 343 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~-~~--~~~liDTPGi~~ 343 (553)
.++++|.||||||||+|+|.+.. ..+++.||||+|+..-... .+ ...++||||+..
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~--------------~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEAR--------------VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--------------eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 69999999999999999998641 1256789999986543222 22 236999999843
No 220
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.31 E-value=2.3e-06 Score=81.91 Aligned_cols=154 Identities=16% Similarity=0.095 Sum_probs=85.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|...+|+.++++.... |..+...-.|. .+.........+ ....+.||+|...|
T Consensus 2 kivivG~~~vGKTsli~~~~~---~~~~~~~~~t~------~~~~~~~i~~~~~~~~l~i~Dt~G~~~~----------- 61 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTR---GYFPQVYEPTV------FENYVHDIFVDGLHIELSLWDTAGQEEF----------- 61 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhc---CCCCCccCCcc------eeeeEEEEEECCEEEEEEEEECCCChhc-----------
Confidence 456778889999999886543 22221110011 011122222222 23468899875322
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhh--------H-HHHHH
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDFNC--------V-GDWVV 235 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~--------~-~~~~~ 235 (553)
..........+|.+++|.|+.+... .++..+.....+.|+++|.||+||......... + .+-..
T Consensus 62 -~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 140 (189)
T cd04134 62 -DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGL 140 (189)
T ss_pred -cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHH
Confidence 1111223468899999999887531 234444443346899999999999654311100 0 00000
Q ss_pred HHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 236 EATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 236 ~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
+ . ....+...++.+||++|.|++++++.|.+.
T Consensus 141 ~-~-~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 141 A-V-AKRINALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred H-H-HHHcCCCEEEEccCCcCCCHHHHHHHHHHH
Confidence 0 0 112232457899999999999999888753
No 221
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.31 E-value=1.1e-06 Score=83.48 Aligned_cols=59 Identities=34% Similarity=0.429 Sum_probs=43.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
..+++++|.+|||||||+|+|.+... ...+++.+|+|.+..... ...+..++||||+..
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~------------~~~~~~~~~~t~~~~~~~-~~~~~~liDtpG~~~ 76 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKK------------LARTSKTPGRTQLINFFE-VNDGFRLVDLPGYGY 76 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC------------cccccCCCCcceEEEEEE-eCCcEEEEeCCCCcc
Confidence 34899999999999999999987521 123567889998643333 334567999999754
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=98.30 E-value=5.6e-06 Score=88.75 Aligned_cols=155 Identities=12% Similarity=-0.005 Sum_probs=78.9
Q ss_pred cccccccCCCcccccCccccccCCC--CCcccCCchhhHh------hhccCccceEEEEEE-ecCCccEEEecCCCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELK------KKHHQFKTVLCGRCR-LLSHGHMITAVGGNGGYA 160 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~------~~~~~~rd~ic~Rc~-~l~~~~~~~dTaG~vgf~ 160 (553)
....+...|-..+||++++...-.. ..|-.....++.+ ++.+-+.+. +...+ ..+....++||+|.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~-~~~~~~~~~~~i~~iDtPGh---- 85 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT-AHVEYETEKRHYAHVDCPGH---- 85 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE-EeeEecCCCcEEEEEECCCH----
Confidence 3446788899999998877544210 0010000001100 111112222 22222 23445689999873
Q ss_pred CCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCC-EEEEEEcccCCCCCCChhhHHHHHHHH
Q 008807 161 GGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANP-IILVVTKVDLLPKGTDFNCVGDWVVEA 237 (553)
Q Consensus 161 ~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~p-vIlVlNKiDLl~~~~~~~~~~~~~~~~ 237 (553)
+.|..........+|++++|||+.+.......++..++ .+.| +|+|+||+|+.+.+...+.+.+.+.+.
T Consensus 86 --------~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 86 --------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred --------HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 23434444445689999999999864222211211111 2566 678899999975432222222222222
Q ss_pred HhhcccC--ceeEEEeccCCcc
Q 008807 238 TTKKKLN--VLSVHLTSSKSLA 257 (553)
Q Consensus 238 ~~~~~l~--~~~vi~iSAk~g~ 257 (553)
+...++. ...++++||+++.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHhCCCcCCccEEEeeccccc
Confidence 2222221 2468999999983
No 223
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.30 E-value=4.4e-06 Score=82.39 Aligned_cols=152 Identities=14% Similarity=0.045 Sum_probs=82.5
Q ss_pred ccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
++..+|..++|+.++++..-.+. +.|.+ |. ..+.... ........++||+|... +
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~~~-----Ti-----g~~~~~~--~~~~~~l~iwDt~G~e~------------~ 57 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDTVS-----TV-----GGAFYLK--QWGPYNISIWDTAGREQ------------F 57 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCC-----cc-----ceEEEEE--EeeEEEEEEEeCCCccc------------c
Confidence 35667888899999987654322 11111 11 0011111 11223467899987532 2
Q ss_pred HHHHHHhhhcccEEEEEcccCCCCh--hh---HHHHHHHh-CCCCEEEEEEcccCCCCC--------------------C
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNG--SF---LARIRDLA-GANPIILVVTKVDLLPKG--------------------T 225 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~--s~---~~~l~~~~-~~~pvIlVlNKiDLl~~~--------------------~ 225 (553)
..........+|++|+|+|+++... .+ +..+.... .+.|+|+|.||+||.... .
T Consensus 58 ~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v 137 (220)
T cd04126 58 HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQV 137 (220)
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccC
Confidence 2222334668999999999998531 11 11122211 247899999999997511 1
Q ss_pred ChhhHHHHHHHHHh----hccc---CceeEEEeccCCccChhhhHHHHHH
Q 008807 226 DFNCVGDWVVEATT----KKKL---NVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 226 ~~~~~~~~~~~~~~----~~~l---~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+....|..+... .+.+ .....+.+||++|.|+++++..+.+
T Consensus 138 ~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~ 187 (220)
T cd04126 138 TLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFN 187 (220)
T ss_pred CHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHH
Confidence 11222233211000 0001 0134788999999999999887764
No 224
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.29 E-value=1.1e-06 Score=79.99 Aligned_cols=59 Identities=42% Similarity=0.593 Sum_probs=42.1
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
|.+++++|.+|+|||||+|+|.+.. ...+++.||||.+.........+ ..++||||+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 61 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRD-------------RAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRE 61 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCc-------------eEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCC
Confidence 3478999999999999999998652 12245678999875543322222 46999999853
No 225
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=8.2e-06 Score=78.17 Aligned_cols=152 Identities=18% Similarity=0.085 Sum_probs=96.7
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++-.+|-...|++..|++.+.+...-... .|.. =|..-+...+.+. ..+++||+| .+
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~d~~f~~~~~---sTiG-----IDFk~kti~l~g~~i~lQiWDtaG------------Qe 72 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFSDDSFNTSFI---STIG-----IDFKIKTIELDGKKIKLQIWDTAG------------QE 72 (207)
T ss_pred EEEEEECCCCCchhHhhhhhhhccCcCCcc---ceEE-----EEEEEEEEEeCCeEEEEEEEEccc------------ch
Confidence 356667777888888888777653321111 0100 0333344444333 236889986 57
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC-CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhccc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG-ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKL 243 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~-~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l 243 (553)
.|+.....+...|+-|++|+|+++.. ..|+..+.+.+. +.+++||.||+|+..+..-.....+-+. ..+
T Consensus 73 rf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA-----~e~ 147 (207)
T KOG0078|consen 73 RFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALA-----REY 147 (207)
T ss_pred hHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHH-----HHh
Confidence 89988999999999999999998632 235555665554 6889999999999764322211112111 112
Q ss_pred CceeEEEeccCCccChhhhHHHHHHh
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
+ ...+.+|||+|.||++.+-.|...
T Consensus 148 G-~~F~EtSAk~~~NI~eaF~~La~~ 172 (207)
T KOG0078|consen 148 G-IKFFETSAKTNFNIEEAFLSLARD 172 (207)
T ss_pred C-CeEEEccccCCCCHHHHHHHHHHH
Confidence 3 456889999999999877666543
No 226
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.28 E-value=8.6e-06 Score=76.79 Aligned_cols=148 Identities=12% Similarity=0.050 Sum_probs=85.7
Q ss_pred ccccCCCcccccCccccccCCCC-Cc-ccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA-PG-YVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~-~G-Y~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|..++|+++++++..... ++ |.+. . .+.........+ ....++||+|..
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t-----~------~~~~~~~~~~~~~~~~~~l~D~~g~~----------- 60 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVESYYPT-----I------ENTFSKIIRYKGQDYHLEIVDTAGQD----------- 60 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCcc-----h------hhhEEEEEEECCEEEEEEEEECCChH-----------
Confidence 57788999999999998765321 12 2111 0 012223333322 234688997642
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTK 240 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~ 240 (553)
.+..........++.+++++|+.+... .+...+.... .+.|+++|+||+|+...... ......+.
T Consensus 61 -~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~------ 133 (180)
T cd04137 61 -EYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA------ 133 (180)
T ss_pred -hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH------
Confidence 232223334557889999999887431 1122222221 25699999999998643221 11111111
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..++ ..++.+||+++.|++++++.+.+..
T Consensus 134 ~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 134 ESWG-AAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred HHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1222 3578899999999999998887543
No 227
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.28 E-value=1e-06 Score=91.98 Aligned_cols=56 Identities=32% Similarity=0.314 Sum_probs=41.9
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-ec--CCcEEEEcCCccC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-FL--GGGKLYDTPGVHL 343 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~~--~~~~liDTPGi~~ 343 (553)
+|.+||.||||||||||+|... ++.++++|+||+.+..-.. +. ....|+||||+..
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~--------------~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~ 217 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAA--------------KPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIE 217 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcC--------------CccccCCCCCccCCEEEEEEeCCceEEEEEeCCCccc
Confidence 7999999999999999999863 3347888999987432221 22 2356999999864
No 228
>CHL00071 tufA elongation factor Tu
Probab=98.27 E-value=5.3e-06 Score=89.34 Aligned_cols=156 Identities=11% Similarity=-0.049 Sum_probs=84.3
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCch---hhHh------hhccCccceEEEEEEecCCccEEEecCCCCCccC
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDT---YELK------KKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAG 161 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~---f~t~------~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~ 161 (553)
...+...|-..+|+++++...-. ..|.+.... ++.+ ++.+.+.+..-..+...+.+..++||||.
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~-~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh----- 85 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITM-TLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH----- 85 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH-HhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh-----
Confidence 34688889999999877765543 133321110 1100 11111112211122233445689999874
Q ss_pred CCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCC-EEEEEEcccCCCCCCChhhHHHHHHHHH
Q 008807 162 GKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANP-IILVVTKVDLLPKGTDFNCVGDWVVEAT 238 (553)
Q Consensus 162 ~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~p-vIlVlNKiDLl~~~~~~~~~~~~~~~~~ 238 (553)
..|...+...+..+|++++|||+.+.......++..++ .+.| +|+|+||+|+.+.+...+.+.+-+.+.+
T Consensus 86 -------~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l 158 (409)
T CHL00071 86 -------ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELL 158 (409)
T ss_pred -------HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 24544455556789999999999864322222222221 3567 6789999999864322222222222222
Q ss_pred hhcccC--ceeEEEeccCCccCh
Q 008807 239 TKKKLN--VLSVHLTSSKSLAGI 259 (553)
Q Consensus 239 ~~~~l~--~~~vi~iSAk~g~gi 259 (553)
...++. ...++++||.+|+++
T Consensus 159 ~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 159 SKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHhCCCCCcceEEEcchhhcccc
Confidence 222221 246889999998765
No 229
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.27 E-value=1.3e-05 Score=81.58 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=94.3
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
.+-+.|+-|.|+++++.+....+|= +.+=.|.|+ ...-+-........+++||+|+- +-|......+.
T Consensus 170 TivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK-------~i~vGhfe~~~~R~QvIDTPGlL----DRPl~ErN~IE 237 (346)
T COG1084 170 TIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTK-------GIHVGHFERGYLRIQVIDTPGLL----DRPLEERNEIE 237 (346)
T ss_pred eEEEecCCCCcHHHHHHHHhcCCCc-cCCCCcccc-------ceeEeeeecCCceEEEecCCccc----CCChHHhcHHH
Confidence 5667789999999999877665443 222236665 55556665555567899999872 22222222344
Q ss_pred HHHHHhh-hcccEEEEEcccCCCC-------hhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccC
Q 008807 173 EKLSHLR-REKALIVKLVDIVDFN-------GSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLN 244 (553)
Q Consensus 173 ~~l~~~~-~~adlIl~VVD~~d~~-------~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~ 244 (553)
.+...++ .=+++|+|++|.+..- .++..++..... .|+++|+||+|+...+. ...+...+ ... +
T Consensus 238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~-~~~~~~~~----~~~--~ 309 (346)
T COG1084 238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEK-LEEIEASV----LEE--G 309 (346)
T ss_pred HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhH-HHHHHHHH----Hhh--c
Confidence 3333333 3578999999998642 344455555444 89999999999985542 22222222 111 1
Q ss_pred ceeEEEeccCCccChhhhHHHHHH
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
......+|+.++.+++.+...+..
T Consensus 310 ~~~~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 310 GEEPLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred cccccceeeeehhhHHHHHHHHHH
Confidence 133456778888888877666543
No 230
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.26 E-value=1.5e-06 Score=82.44 Aligned_cols=152 Identities=17% Similarity=0.118 Sum_probs=94.6
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..++...|...+|+.+.|+........-+.+ |. ..-+..+...++...+.|.+|-..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~p----T~-------g~~~~~i~~~~~~~~~~d~gG~~~---------- 70 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIP----TI-------GFNIEEIKYKGYSLTIWDLGGQES---------- 70 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEE----ES-------SEEEEEEEETTEEEEEEEESSSGG----------
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCc----cc-------ccccceeeeCcEEEEEEecccccc----------
Confidence 455578889999999999998775421111111 11 334455556666778899977422
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
++..-.....++|.||+|||.+|... .....+..++ ...|+++++||.|+.... ....+.+.+ ...
T Consensus 71 --~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~-~~~~i~~~l----~l~ 143 (175)
T PF00025_consen 71 --FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM-SEEEIKEYL----GLE 143 (175)
T ss_dssp --GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS-THHHHHHHT----TGG
T ss_pred --ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc-hhhHHHhhh----hhh
Confidence 11112234568899999999998541 1122233322 368999999999986433 333333322 112
Q ss_pred cc---CceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KL---NVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l---~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+ ....++.+||.+|.|+.+.++.|.+
T Consensus 144 ~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 144 KLKNKRPWSVFSCSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp GTTSSSCEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred hcccCCceEEEeeeccCCcCHHHHHHHHHh
Confidence 22 2356888999999999998888764
No 231
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.25 E-value=4.5e-06 Score=77.56 Aligned_cols=148 Identities=21% Similarity=0.153 Sum_probs=81.4
Q ss_pred cccCCCcccccCccccccCCC-CCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESD-APGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~-~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
+..+|...+|+.++++..-.. -.+-+++... ............ ...++||+|..-+
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~----------~~~~~~~~~~~~~~~~~i~D~~g~~~~----------- 60 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIGEYDPNLE----------SLYSRQVTIDGEQVSLEILDTAGQQQA----------- 60 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCccccccCCChH----------HhceEEEEECCEEEEEEEEECCCCccc-----------
Confidence 456788899999998654211 1121111110 111111112212 3568999874210
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh---CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA---GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKK 241 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~---~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~ 241 (553)
+.......+..+|++++|+|+.+... .+...+.... .+.|+++|+||+|+..... ..+....+. +
T Consensus 61 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~ 134 (165)
T cd04146 61 DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA------S 134 (165)
T ss_pred ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH------H
Confidence 01112223567899999999987531 1223333322 2689999999999864321 122222221 1
Q ss_pred ccCceeEEEeccCCcc-ChhhhHHHHHHh
Q 008807 242 KLNVLSVHLTSSKSLA-GIVGVASEIQKE 269 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~-gi~~Ll~~L~~~ 269 (553)
..+ ..++.+||+++. |++++++.+.+.
T Consensus 135 ~~~-~~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 135 ELG-CLFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred HcC-CEEEEeCCCCCchhHHHHHHHHHHH
Confidence 223 357899999995 999999887653
No 232
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.25 E-value=1.3e-06 Score=83.64 Aligned_cols=58 Identities=31% Similarity=0.368 Sum_probs=42.2
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
.+++++|.+|||||||||+|++... ...+++.+|+|++..... ......|+||||+..
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~------------~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~ 82 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKN------------LARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGY 82 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCC------------cccccCCCCceeEEEEEe-cCCeEEEeCCCCCCC
Confidence 4799999999999999999997421 123566789998633222 334567999999753
No 233
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.25 E-value=6.5e-06 Score=81.12 Aligned_cols=147 Identities=12% Similarity=0.030 Sum_probs=85.2
Q ss_pred ccccCCCcccccCccccccCCCC---CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcccc
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA---PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~---~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l 167 (553)
++..+|..+.|++++++..-.+. ..|.+... .+.....+.... ....++||+|..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~----------~~~~~~~i~~~~~~~~l~i~Dt~G~~---------- 61 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD----------DDTYERTVSVDGEESTLVVIDHWEQE---------- 61 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc----------ccceEEEEEECCEEEEEEEEeCCCcc----------
Confidence 45678889999999998763211 12222110 022223333322 335688998742
Q ss_pred HHHHHHHHHHhhh-cccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHH
Q 008807 168 ADELREKLSHLRR-EKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEAT 238 (553)
Q Consensus 168 ~e~~~~~l~~~~~-~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~ 238 (553)
..... .... ++|++++|+|+.|.. ..++..+.... .+.|+|+|+||+|+...... .....++.
T Consensus 62 -~~~~~---~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a---- 133 (221)
T cd04148 62 -MWTED---SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACA---- 133 (221)
T ss_pred -hHHHh---HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHH----
Confidence 11111 1234 899999999999853 12223333321 35799999999999754321 11111221
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+..
T Consensus 134 --~~~~-~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 134 --VVFD-CKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred --HHcC-CeEEEecCCCCCCHHHHHHHHHHHH
Confidence 1123 3578999999999999998886543
No 234
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.21 E-value=1.4e-07 Score=100.73 Aligned_cols=240 Identities=28% Similarity=0.304 Sum_probs=133.8
Q ss_pred CCCCCcCC-CCCCcchHHHHHHHHHHHHHHHHHH-HHHhhhccc-cc---ccccCCCcccccCccccccCCCCCc-ccCC
Q 008807 49 ESDGAGAA-APTRGDRFLELQKAKEAAKVVVRDS-KKKRKKKDK-VL---KVNSAVASCYGCGAPLQTSESDAPG-YVDP 121 (553)
Q Consensus 49 ~~~g~g~~-gp~~ge~~~e~~~~~~~~~~~~~~~-~~~~r~~~~-~~---~~~~~~~~C~GCG~~LQ~~d~~~~G-Y~~~ 121 (553)
..|+++.- =| |..+++-+++..+.......= ++..+++++ .. -+......| |+..++..+-..++ ++.-
T Consensus 69 ~d~~~~~~~cp--gc~~l~~~~~~~~~~v~~~~y~k~~~~~~~~~~~~~~vvd~~d~p~--~i~p~~~~~v~~~~~~v~~ 144 (572)
T KOG1249|consen 69 RDGFLAAIVCP--GCGFLEHMRAALAVPVVPGEYKKEKSEKQENPALARKVVDLSDEPC--SIDPLLTNDVGSPRLFVDG 144 (572)
T ss_pred cccccccccCC--cchHHHHhhhhccCccChhhhhhhhhhhhhcccceEEeeecccCcc--ccccchhhcccCCceEeec
Confidence 34556443 45 888887766665332221110 111111111 11 333344445 77777666665565 3333
Q ss_pred chhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHH
Q 008807 122 DTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLAR 201 (553)
Q Consensus 122 ~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~ 201 (553)
.+.+.+..+ .+..+|+||+.+.|+.++.+.+|.+.+.+ ..+......+... ....-.+|+.++|..||++++...
T Consensus 145 n~vdl~p~d--~~~~~c~rc~~l~~~~~vk~~~~en~~p~-~~f~~~~~~r~kt--gyg~eeLI~~lvd~~df~Gdf~lv 219 (572)
T KOG1249|consen 145 NKVDLLPKD--SRPGYCQRCHSLLHYGMIKAGGGENLNPD-FDFDHVDLIRAKT--GYGIEELIVMLVDIVDFRGDFYLV 219 (572)
T ss_pred ccccccccc--ccchHHHHHHhhcccceeecccccCCCcc-cchhhhhhhhhhh--cccHHHHHHHhhheeeccCceeee
Confidence 333322222 23789999999999999998877665541 1111112222222 222345888899998887655432
Q ss_pred HHHHh-----------------CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc-cCceeEEEeccCCccChhhhH
Q 008807 202 IRDLA-----------------GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK-LNVLSVHLTSSKSLAGIVGVA 263 (553)
Q Consensus 202 l~~~~-----------------~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~-l~~~~vi~iSAk~g~gi~~Ll 263 (553)
....+ ..-..+.+.+|+|..+......++.-|........+ .....++.+||++.+|..+|+
T Consensus 220 g~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~ 299 (572)
T KOG1249|consen 220 GATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLL 299 (572)
T ss_pred eecccchhhHHHHHhhhccccccccceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHH
Confidence 21111 112467788999987765443333333211111111 112346788999999988877
Q ss_pred HHHHHh-hcccceEEeccCCCChhHHHHHHHhhhC
Q 008807 264 SEIQKE-KKGRDVYILGSANVGKSAFINALLKKMG 297 (553)
Q Consensus 264 ~~L~~~-~~g~~v~ivG~~NVGKSTLIN~L~~~~~ 297 (553)
...... .+...++.||.+|.||+++||++-....
T Consensus 300 ~~~~~~ag~~~~v~~vg~t~a~~e~~~~~~~~~~~ 334 (572)
T KOG1249|consen 300 ALETGDAGKAGPVAAVGRTFAGSEELINAMAKELH 334 (572)
T ss_pred HhhhhccccccchHHhhhhhhccchhhhhhhhhhc
Confidence 654432 3455899999999999999999986543
No 235
>PRK12735 elongation factor Tu; Reviewed
Probab=98.21 E-value=1.3e-05 Score=85.89 Aligned_cols=159 Identities=11% Similarity=-0.043 Sum_probs=81.0
Q ss_pred ccccccccCCCcccccCccccccCCC--CC------cccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCcc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESD--AP------GYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYA 160 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~--~~------GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~ 160 (553)
+....+...|-..+||++++...-.. .. +|..-......+..+-+.+.....+...+.+..++||+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh---- 85 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH---- 85 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH----
Confidence 33446788899999999986544210 01 1110000000011111122211122223345689999873
Q ss_pred CCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-hhhHHHHHHH-hCCCCEE-EEEEcccCCCCCCChhhHHHHHHHH
Q 008807 161 GGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-GSFLARIRDL-AGANPII-LVVTKVDLLPKGTDFNCVGDWVVEA 237 (553)
Q Consensus 161 ~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-~s~~~~l~~~-~~~~pvI-lVlNKiDLl~~~~~~~~~~~~~~~~ 237 (553)
+.|...+...+..+|++++|+|+.+.. ....+.+..+ ..+.|.+ +|+||+|+.+++...+.+.+-+...
T Consensus 86 --------~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 86 --------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred --------HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 245455555667899999999998732 2222222211 1356755 5799999985332222222112222
Q ss_pred HhhcccC--ceeEEEeccCCccCh
Q 008807 238 TTKKKLN--VLSVHLTSSKSLAGI 259 (553)
Q Consensus 238 ~~~~~l~--~~~vi~iSAk~g~gi 259 (553)
+...++. ...++++||+++++.
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEG 181 (396)
T ss_pred HHHcCCCcCceeEEecchhccccC
Confidence 2221221 256789999998764
No 236
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.21 E-value=2.2e-06 Score=79.63 Aligned_cols=55 Identities=31% Similarity=0.311 Sum_probs=38.2
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee--cCCcEEEEcCCcc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF--LGGGKLYDTPGVH 342 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~--~~~~~liDTPGi~ 342 (553)
+++++|.+|||||||+|+|.+.. ..++..|++|.+...-... .....++||||+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK--------------PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC--------------CccCCCCCcccceeEEEEccCceEEEEEECCCcC
Confidence 58999999999999999998642 1234568888753221111 1245699999974
No 237
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.21 E-value=1.5e-06 Score=79.39 Aligned_cols=56 Identities=36% Similarity=0.411 Sum_probs=38.8
Q ss_pred EEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccCC
Q 008807 276 YILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 276 ~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~~ 344 (553)
+++|.+|||||||+|+|.+.. ...++..|+||++......... ...++||||+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~-------------~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRR-------------DAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCc-------------EEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence 478999999999999998652 1234567889986443332222 3469999998643
No 238
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.20 E-value=2.1e-05 Score=72.09 Aligned_cols=162 Identities=17% Similarity=0.031 Sum_probs=84.8
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELRE 173 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~ 173 (553)
+..+|..-+|++++++..-. .++.+...-. .. ....+ ..........++||+|..... . +....+.+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~--~~~~~~~~~~----~~--~t~~~-~~~~~~~~~~~~D~~g~~~~~-~-~~~~~~~~~~ 70 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN--RKKLARTSKT----PG--KTQLI-NFFNVNDKFRLVDLPGYGYAK-V-SKEVKEKWGK 70 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc--CCceeeecCC----CC--cceeE-EEEEccCeEEEecCCCccccc-c-CHHHHHHHHH
Confidence 45667888898888876552 1222111000 00 01111 122223467889998753221 1 1112233333
Q ss_pred HHHHhh---hcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 174 KLSHLR---REKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 174 ~l~~~~---~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
.+.... ...+++++++|..+........+...+ ...|+++|+||+|++..... .....-....+ ........+
T Consensus 71 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~-~~~~~~~~~~l-~~~~~~~~~ 148 (170)
T cd01876 71 LIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSEL-AKALKEIKKEL-KLFEIDPPI 148 (170)
T ss_pred HHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHH-HHHHHHHHHHH-HhccCCCce
Confidence 332222 345788999998765322222222222 25789999999999755421 11111111111 102233568
Q ss_pred EEeccCCccChhhhHHHHHH
Q 008807 249 HLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~ 268 (553)
+.+||+++.|++++++.|.+
T Consensus 149 ~~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 149 ILFSSLKGQGIDELRALIEK 168 (170)
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 89999999999999988875
No 239
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.20 E-value=1.9e-06 Score=99.15 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=43.8
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.++.++|.||||||||+|+|.+. +..++++||+|.+..+.....++ ..++||||+...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~--------------~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl 63 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGA--------------RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC--------------CCccCCCCCceEeeEEEEEEcCceEEEEEECCCcccc
Confidence 47999999999999999999764 12468899999975544332222 469999998654
No 240
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.20 E-value=1.2e-05 Score=86.56 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=65.9
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHH--HHhCCCCEEEEEEcccCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN--GSFLARIR--DLAGANPIILVVTKVDLL 221 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~--~~~~~~pvIlVlNKiDLl 221 (553)
+...++||+|. +.|..........+|++++|+|+.+.. ......+. ...+..++++|+||+|+.
T Consensus 85 ~~i~liDtPG~------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 85 RRVSFVDAPGH------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred cEEEEEECCCH------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 45678999873 234434444455789999999998642 22112221 122345789999999998
Q ss_pred CCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 222 PKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
+.+....... .+...+.........++.+||+++.|+++|++.|.+.
T Consensus 153 ~~~~~~~~~~-~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 153 SKERALENYE-QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred cchhHHHHHH-HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 6432111111 1111111111112468899999999999998888653
No 241
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.20 E-value=6.7e-06 Score=91.01 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=97.9
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
.+++.+|--|.|+.+.|+..... .=|+ +.+. +-+=+...+.....++...++|.+|+.-+... ..+|.+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~-~q~V--gNwp-----GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~---S~DE~V 72 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA-NQKV--GNWP-----GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY---SEDEKV 72 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc-Ccee--cCCC-----CeeEEEEEEEEEecCceEEEEeCCCcCCCCCC---CchHHH
Confidence 35888899999999999765542 1122 1111 00002334555666777899999998533222 223333
Q ss_pred H-HHHHHhhhcccEEEEEcccCCCChhhH--HHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 172 R-EKLSHLRREKALIVKLVDIVDFNGSFL--ARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 172 ~-~~l~~~~~~adlIl~VVD~~d~~~s~~--~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
- +-+. ..+.|+|+.|||+++.+.++. -++.+ -+.|+++++|++|...+.-..-..++ + ++.++ .+|
T Consensus 73 ar~~ll--~~~~D~ivnVvDAtnLeRnLyltlQLlE--~g~p~ilaLNm~D~A~~~Gi~ID~~~-L-----~~~LG-vPV 141 (653)
T COG0370 73 ARDFLL--EGKPDLIVNVVDATNLERNLYLTLQLLE--LGIPMILALNMIDEAKKRGIRIDIEK-L-----SKLLG-VPV 141 (653)
T ss_pred HHHHHh--cCCCCEEEEEcccchHHHHHHHHHHHHH--cCCCeEEEeccHhhHHhcCCcccHHH-H-----HHHhC-CCE
Confidence 2 2232 246799999999998664432 23333 37889999999999866321111111 1 23355 578
Q ss_pred EEeccCCccChhhhHHHHHHhh
Q 008807 249 HLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
+.+||++|.|+++|++++.+..
T Consensus 142 v~tvA~~g~G~~~l~~~i~~~~ 163 (653)
T COG0370 142 VPTVAKRGEGLEELKRAIIELA 163 (653)
T ss_pred EEEEeecCCCHHHHHHHHHHhc
Confidence 9999999999999998886543
No 242
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.19 E-value=1.7e-06 Score=79.30 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=37.1
Q ss_pred EeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEE--EEeecCCcEEEEcCCccC
Q 008807 277 ILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQ--IDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 277 ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~--i~~~~~~~~liDTPGi~~ 343 (553)
++|.+|||||||+|++.+.. ..++..||+|++... +........++||||+..
T Consensus 1 l~G~~~~GKssl~~~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~ 55 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--------------QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYS 55 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--------------ccccCCCCcccccceEEEeeCCeEEEEEECCCccc
Confidence 58999999999999998641 234567899987432 221112356999999854
No 243
>PLN03108 Rab family protein; Provisional
Probab=98.19 E-value=2.1e-05 Score=76.70 Aligned_cols=150 Identities=15% Similarity=0.065 Sum_probs=87.9
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++.++|...+|++++++...... |.+... .+. ..+.....+...+. ...++||+|. +
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~--~~~~~~-~ti-----~~~~~~~~i~~~~~~i~l~l~Dt~G~------------~ 66 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKR--FQPVHD-LTI-----GVEFGARMITIDNKPIKLQIWDTAGQ------------E 66 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCCCC-CCc-----cceEEEEEEEECCEEEEEEEEeCCCc------------H
Confidence 467788999999999998765321 111100 000 01223334444332 3457898763 2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~ 242 (553)
.+..........+|.+|+|+|+.+... .+...+.... ...|+++|+||+||..... ..+...++. ..
T Consensus 67 ~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~------~~ 140 (210)
T PLN03108 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFA------KE 140 (210)
T ss_pred HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHH------HH
Confidence 333333444568999999999987541 2223333222 3578999999999975432 222223332 11
Q ss_pred cCceeEEEeccCCccChhhhHHHHHH
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+ ..++.+||+++.|++++++.+.+
T Consensus 141 ~~-~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 141 HG-LIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred cC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence 23 35789999999999998776653
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.18 E-value=1.4e-05 Score=85.90 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=67.9
Q ss_pred cceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhH---HHHHHHhCCCC
Q 008807 134 KTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFL---ARIRDLAGANP 210 (553)
Q Consensus 134 rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~---~~l~~~~~~~p 210 (553)
.+.....+...++...++||+|. +.|...+...+..+|++++|||+.+...... ..+....+..+
T Consensus 68 id~~~~~~~~~~~~~~liDtPGh------------~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~ 135 (406)
T TIGR02034 68 IDVAYRYFSTDKRKFIVADTPGH------------EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRH 135 (406)
T ss_pred eEeeeEEEccCCeEEEEEeCCCH------------HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCc
Confidence 34444445455667789999873 2344334445679999999999976432211 12222234456
Q ss_pred EEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcccCceeEEEeccCCccChhhh
Q 008807 211 IILVVTKVDLLPKGTD-FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGV 262 (553)
Q Consensus 211 vIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~L 262 (553)
+|+|+||+|+...+.. ...+.+.+...+...++....++.+||++|.|++++
T Consensus 136 iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 136 VVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 8899999999753311 111122111111111222235899999999998754
No 245
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.16 E-value=1.3e-05 Score=91.37 Aligned_cols=152 Identities=12% Similarity=0.055 Sum_probs=90.9
Q ss_pred ccccccccCCCcccccCccccccCCCC------CcccCCchhhHhhhccCccceEEEEEEe----cCCccEEEecCCCCC
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA------PGYVDPDTYELKKKHHQFKTVLCGRCRL----LSHGHMITAVGGNGG 158 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~------~GY~~~~~f~t~~~~~~~rd~ic~Rc~~----l~~~~~~~dTaG~vg 158 (553)
.+...+...|..++|+.+++....... .|++. +.-...+.+ ......++||+|.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq--------------~i~~~~v~~~~~~~~~kItfiDTPGh-- 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQ--------------KIGAYEVEFEYKDENQKIVFLDTPGH-- 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCcccc--------------ccceEEEEEEecCCceEEEEEECCcH--
Confidence 455688889999999999986553211 11111 111111111 1245688999873
Q ss_pred ccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh-hhHHHHHHH-hCCCCEEEEEEcccCCCCCCChhhHHHHHHH
Q 008807 159 YAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG-SFLARIRDL-AGANPIILVVTKVDLLPKGTDFNCVGDWVVE 236 (553)
Q Consensus 159 f~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-s~~~~l~~~-~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~ 236 (553)
++|..........+|++|+|||+.+... .-...+..+ ..+.|+|+|+||+|+.... ...+.+.+..
T Consensus 306 ----------e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~--~e~v~~eL~~ 373 (742)
T CHL00189 306 ----------EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN--TERIKQQLAK 373 (742)
T ss_pred ----------HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC--HHHHHHHHHH
Confidence 4566666666778999999999987421 111222211 1368999999999986532 2222222211
Q ss_pred H-Hhhccc-CceeEEEeccCCccChhhhHHHHHH
Q 008807 237 A-TTKKKL-NVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 237 ~-~~~~~l-~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
. ...... +...++.+||++|.|+++|++.|..
T Consensus 374 ~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~ 407 (742)
T CHL00189 374 YNLIPEKWGGDTPMIPISASQGTNIDKLLETILL 407 (742)
T ss_pred hccchHhhCCCceEEEEECCCCCCHHHHHHhhhh
Confidence 1 000111 1246899999999999999988754
No 246
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.15 E-value=3.4e-06 Score=77.96 Aligned_cols=59 Identities=36% Similarity=0.453 Sum_probs=42.1
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~~ 344 (553)
.+++++|.+|+|||||+|+|.+... ...+..|+||++......... ...++||||+...
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEER-------------VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK 63 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc-------------eeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence 4689999999999999999987521 224567888887644332222 2469999998644
No 247
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.14 E-value=2.2e-06 Score=80.01 Aligned_cols=52 Identities=33% Similarity=0.339 Sum_probs=36.3
Q ss_pred EeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-e--cCCcEEEEcCCcc
Q 008807 277 ILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-F--LGGGKLYDTPGVH 342 (553)
Q Consensus 277 ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~--~~~~~liDTPGi~ 342 (553)
++|.+|||||||+|+|.+... .++..|+||.++..-.. . .....++||||+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--------------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--------------cccCCCceeecCcceEEEcCCCCeEEEEeccccc
Confidence 589999999999999987521 24567888876433222 1 1234699999984
No 248
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.14 E-value=1.7e-05 Score=85.39 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=66.3
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHH--HHHhCCCCEEEEEEcccCCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN--GSFLARI--RDLAGANPIILVVTKVDLLP 222 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l--~~~~~~~pvIlVlNKiDLl~ 222 (553)
...++||+|. +.|..........+|.+++|||+.+.. ....+.+ ....+.+++++|+||+|+.+
T Consensus 81 ~i~liDtPGh------------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 81 RVSFVDAPGH------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred EEEEEECCCH------------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 4678999873 344444444556889999999998642 1111222 22234567899999999986
Q ss_pred CCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 223 KGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.+....... .+.+.+.........++.+||+++.|+++|++.|.+.
T Consensus 149 ~~~~~~~~~-~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 149 KEKALENYE-EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHHHHHHHH-HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 432111111 1111111111112458899999999999999888754
No 249
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.13 E-value=1.6e-05 Score=85.27 Aligned_cols=156 Identities=11% Similarity=-0.026 Sum_probs=77.5
Q ss_pred cccccccCCCcccccCccccccCCC--CCc------ccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccC
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESD--APG------YVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAG 161 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~--~~G------Y~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~ 161 (553)
....+.+.|-..+||++++...-.. ..| |..-......++.+-+.+..-......+....++||+|..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~---- 86 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---- 86 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH----
Confidence 3446788888899998776544210 011 1100000101112222333222222223456799998742
Q ss_pred CCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCE-EEEEEcccCCCCCCChhhHHHHHHHHH
Q 008807 162 GKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPI-ILVVTKVDLLPKGTDFNCVGDWVVEAT 238 (553)
Q Consensus 162 ~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pv-IlVlNKiDLl~~~~~~~~~~~~~~~~~ 238 (553)
.|..........+|.+++|+|+.+.......+...++ .+.|. |+|+||+|+++++...+.+.+-+.+.+
T Consensus 87 --------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l 158 (394)
T TIGR00485 87 --------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred --------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 3333333445688999999999873222111111111 24565 468999999864321221211222222
Q ss_pred hhcccC--ceeEEEeccCCcc
Q 008807 239 TKKKLN--VLSVHLTSSKSLA 257 (553)
Q Consensus 239 ~~~~l~--~~~vi~iSAk~g~ 257 (553)
....+. ...++++||.++.
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 159 SEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HhcCCCccCccEEECcccccc
Confidence 222221 1468899999875
No 250
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.12 E-value=1e-05 Score=92.97 Aligned_cols=157 Identities=14% Similarity=0.024 Sum_probs=88.5
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
.|...+.+.|...+|+.+++...-... +..+.+. ..+.+.-...+.+.++...|+||+|...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~---v~~~e~~-----GIT~~iga~~v~~~~~~ItfiDTPGhe~---------- 349 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN---VAAGEAG-----GITQHIGAYQVETNGGKITFLDTPGHEA---------- 349 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC---ccccccC-----ceeeeccEEEEEECCEEEEEEECCCCcc----------
Confidence 455577888888999999887653210 1010000 0001222233444456678999988532
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-hhHHHHHHH-hCCCCEEEEEEcccCCCCCCChhhHHHHHHHH-Hhhccc-C
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-SFLARIRDL-AGANPIILVVTKVDLLPKGTDFNCVGDWVVEA-TTKKKL-N 244 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-s~~~~l~~~-~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~-~~~~~l-~ 244 (553)
|..........+|++|+|+|+.+... .....+... ..+.|+|+|+||+|+...+ ...+...+.+. +....+ +
T Consensus 350 --F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~g~ 425 (787)
T PRK05306 350 --FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN--PDRVKQELSEYGLVPEEWGG 425 (787)
T ss_pred --chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC--HHHHHHHHHHhcccHHHhCC
Confidence 22223334567899999999987421 111222211 1468999999999995432 22222222110 000111 1
Q ss_pred ceeEEEeccCCccChhhhHHHHH
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
...++.+||++|.|+++|++.|.
T Consensus 426 ~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 426 DTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred CceEEEEeCCCCCCchHHHHhhh
Confidence 24689999999999999988875
No 251
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.12 E-value=4e-06 Score=83.36 Aligned_cols=56 Identities=29% Similarity=0.265 Sum_probs=40.3
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
+++++|.+|||||||+|+|.+.. ..++.+|+||.++..-.....+ ..++||||+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--------------~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~ 59 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--------------SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIE 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--------------ccccCCCCccccceEEEEEECCeEEEEEECCCccc
Confidence 57899999999999999998641 2245678899765443221223 46899999854
No 252
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.12 E-value=2.1e-05 Score=77.67 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=85.0
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|....|+.++++..-.+. ..|.+. .+ +..+......++ ...++||+|.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pT-i~----------~~~~~~~~~~~~~v~L~iwDt~G~------------ 59 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPGSYVPT-VF----------ENYTASFEIDKRRIELNMWDTSGS------------ 59 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCccCCc-cc----------cceEEEEEECCEEEEEEEEeCCCc------------
Confidence 46678889999999998654321 123321 11 222222223222 3457899874
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHH-------HHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGD-------WVV 235 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~-------~~~ 235 (553)
+.|.........++|++|+|+|+.+... .+...+.....+.|+|||.||+||.........+.+ .-.
T Consensus 60 e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~ 139 (222)
T cd04173 60 SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQ 139 (222)
T ss_pred HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHH
Confidence 2333333345679999999999998631 122222222346899999999999653111000000 000
Q ss_pred HHHhhcccCceeEEEeccCCcc-ChhhhHHHHHH
Q 008807 236 EATTKKKLNVLSVHLTSSKSLA-GIVGVASEIQK 268 (553)
Q Consensus 236 ~~~~~~~l~~~~vi~iSAk~g~-gi~~Ll~~L~~ 268 (553)
.....+.++....+.+||+++. |+++++.....
T Consensus 140 g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 140 GTVLAKQVGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 0001123443467889999988 49998876543
No 253
>PLN03126 Elongation factor Tu; Provisional
Probab=98.11 E-value=2.7e-05 Score=85.20 Aligned_cols=158 Identities=9% Similarity=-0.044 Sum_probs=85.0
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCc---hh---hHh---hhccCccceEEEEEEecCCccEEEecCCCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPD---TY---ELK---KKHHQFKTVLCGRCRLLSHGHMITAVGGNGGY 159 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~---~f---~t~---~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf 159 (553)
+....+...|-..+|+++++...-. ..|.+... .+ +.. +..+-..+.....+...++...++||+|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~-~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh--- 154 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTM-ALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH--- 154 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHH-hhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH---
Confidence 3345678889999999998876542 12322111 11 000 11111112222233344556789999874
Q ss_pred cCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCC-EEEEEEcccCCCCCCChhhHHHHHHH
Q 008807 160 AGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANP-IILVVTKVDLLPKGTDFNCVGDWVVE 236 (553)
Q Consensus 160 ~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~p-vIlVlNKiDLl~~~~~~~~~~~~~~~ 236 (553)
+.|...+...+..+|++++|||+.+.......+...++ .+.| +|+|+||+|+.+.+...+.+.+-+.+
T Consensus 155 ---------~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~ 225 (478)
T PLN03126 155 ---------ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRE 225 (478)
T ss_pred ---------HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 23444445555689999999999865332222222221 3566 67899999998643212222222222
Q ss_pred HHhhcccC--ceeEEEeccCCccCh
Q 008807 237 ATTKKKLN--VLSVHLTSSKSLAGI 259 (553)
Q Consensus 237 ~~~~~~l~--~~~vi~iSAk~g~gi 259 (553)
.+...++. ...++.+||.+++++
T Consensus 226 ~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 226 LLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHhcCCCcCcceEEEEEccccccc
Confidence 22222221 245788999988654
No 254
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.11 E-value=4.4e-06 Score=92.48 Aligned_cols=58 Identities=33% Similarity=0.488 Sum_probs=41.1
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCC-CCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSA-VPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~-~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.+++++|.|||||||++|+|++.... .++. .|+||+ ..++.....+ ..||||||+...
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf-------------~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt 179 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKF-------------STDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSS 179 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccc-------------cccCCCCCceE-EEEEEEEECCceEEEEECCCCCcc
Confidence 36999999999999999999986322 2233 367876 4444322223 479999999864
No 255
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.09 E-value=2.6e-05 Score=84.42 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=67.9
Q ss_pred ceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC----hhhHHH--HHHHhCC
Q 008807 135 TVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN----GSFLAR--IRDLAGA 208 (553)
Q Consensus 135 d~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~----~s~~~~--l~~~~~~ 208 (553)
+..-..+........++||+|. +.|..........+|.+++|+|+.+.+ ...... +....+.
T Consensus 74 d~~~~~~~~~~~~i~iiDtpGh------------~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~ 141 (426)
T TIGR00483 74 DVAHWKFETDKYEVTIVDCPGH------------RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGI 141 (426)
T ss_pred EEEEEEEccCCeEEEEEECCCH------------HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCC
Confidence 4444445555566789999873 234433444456899999999998752 111111 2222344
Q ss_pred CCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcccC--ceeEEEeccCCccChhhhHH
Q 008807 209 NPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKKLN--VLSVHLTSSKSLAGIVGVAS 264 (553)
Q Consensus 209 ~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~l~--~~~vi~iSAk~g~gi~~Ll~ 264 (553)
.++|+|+||+|+...+.. .....+-+.+.+...++. ...++.+||++|.|++++..
T Consensus 142 ~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 142 NQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred CeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 578899999999753211 111111121222222221 24689999999999987543
No 256
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.09 E-value=3.4e-05 Score=80.16 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=43.4
Q ss_pred CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHH-HHHHhhcccceEEeccCC
Q 008807 208 ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVAS-EIQKEKKGRDVYILGSAN 282 (553)
Q Consensus 208 ~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~-~L~~~~~g~~v~ivG~~N 282 (553)
.+|+|+|+||+|+...+. ..+++. .......++.+||+.+.++++|.+ .+.+++++..-+.+=.++
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~-----~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~~~ 280 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLR-----LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITDEL 280 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHH-----hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecccC
Confidence 469999999999753321 112221 122335789999999999999997 588888654333333344
No 257
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.09 E-value=2.3e-05 Score=89.04 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=67.3
Q ss_pred cceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhh---HHHHHHHhCCCC
Q 008807 134 KTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSF---LARIRDLAGANP 210 (553)
Q Consensus 134 rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~---~~~l~~~~~~~p 210 (553)
.+.....+...+.+..++||+|. +.|...+...+..+|++++|||+.+..... ...+....+.++
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~------------~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~ 159 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGH------------EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRH 159 (632)
T ss_pred ceeeeeEEccCCceEEEEECCCh------------HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCe
Confidence 34444455556667889999874 233333334567999999999997643211 111222234567
Q ss_pred EEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcccCceeEEEeccCCccChhh
Q 008807 211 IILVVTKVDLLPKGTD-FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVG 261 (553)
Q Consensus 211 vIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~ 261 (553)
+|+|+||+|+...+.. ...+...+.+.+...++....++++||++|.|+++
T Consensus 160 iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 160 VVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred EEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 8899999999753211 11121111111111222224589999999999874
No 258
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=1.2e-05 Score=75.84 Aligned_cols=153 Identities=17% Similarity=0.131 Sum_probs=91.0
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++-++|.+..|++++.+.--.+ .|......-..-.-+++...... +.+.+.||||--
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~--------~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE------------ 65 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKD--------QFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE------------ 65 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhC--------ccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcc------------
Confidence 35667788888888887644322 11100000000012233333332 566799999853
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCC-CCEEEEEEcccCCCC-CCChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGA-NPIILVVTKVDLLPK-GTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~-~pvIlVlNKiDLl~~-~~~~~~~~~~~~~~~~~~~ 242 (553)
.+.........+|+.+|.|.|+.+.+ ..+..+|.+.+.. .-+.||.||+||... ....+....|. +.
T Consensus 66 Ry~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yA------e~ 139 (200)
T KOG0092|consen 66 RYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYA------ES 139 (200)
T ss_pred cccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHH------Hh
Confidence 33333444567999999999999854 3455566554432 234579999999873 33333333332 12
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
.+ .-.+.+|||++.|+++|+..|.+.++
T Consensus 140 ~g-ll~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 140 QG-LLFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred cC-CEEEEEecccccCHHHHHHHHHHhcc
Confidence 22 34688999999999999988877543
No 259
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.08 E-value=3e-05 Score=86.93 Aligned_cols=157 Identities=13% Similarity=0.005 Sum_probs=88.6
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC-ccEEEecCCCCCccCCCcccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH-GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~-~~~~~dTaG~vgf~~~~~~~l 167 (553)
.+...+...|....|+.++|....... +.. ..+. ..+.+.-...+...+. ...++||+|..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~--v~~-~e~~-----GIT~~ig~~~v~~~~~~~i~~iDTPGhe---------- 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK--VAQ-GEAG-----GITQHIGAYHVENEDGKMITFLDTPGHE---------- 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--ccc-ccCC-----ceeecceEEEEEECCCcEEEEEECCCCc----------
Confidence 345588889999999999998654321 110 0000 0001221222333233 57899998853
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-hhHHHHHHH-hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHH-hhcccC
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-SFLARIRDL-AGANPIILVVTKVDLLPKGTDFNCVGDWVVEAT-TKKKLN 244 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-s~~~~l~~~-~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~-~~~~l~ 244 (553)
+|..........+|++++|+|+.+... ...+.+... ..+.|+++++||+|+... ..+.+.+++.+.- ....++
T Consensus 147 --~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~--~~e~v~~~L~~~g~~~~~~~ 222 (587)
T TIGR00487 147 --AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEA--NPDRVKQELSEYGLVPEDWG 222 (587)
T ss_pred --chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccC--CHHHHHHHHHHhhhhHHhcC
Confidence 222222334567899999999886431 122222211 136899999999998543 2233333332110 001111
Q ss_pred -ceeEEEeccCCccChhhhHHHHH
Q 008807 245 -VLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 245 -~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
...++.+||++|.|+++|++.|.
T Consensus 223 ~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 223 GDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred CCceEEEEECCCCCChHHHHHhhh
Confidence 13578999999999999988774
No 260
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.08 E-value=6.2e-06 Score=75.40 Aligned_cols=59 Identities=37% Similarity=0.348 Sum_probs=40.2
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~~ 344 (553)
..++++|.+|+|||||+|+|++... +..+..+++|+.......... ...++||||+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKI-------------SIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCce-------------EeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence 3689999999999999999986521 123445667765444332222 2459999998654
No 261
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.08 E-value=3.7e-06 Score=85.33 Aligned_cols=57 Identities=32% Similarity=0.390 Sum_probs=43.3
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
++++||.||||||||+|+|.+. ..-+.++|-||+.++.-.+..++ ..|+|+|||...
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt--------------~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNT--------------KSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCC--------------CccccccCceecccccceEeecCceEEEEcCcccccC
Confidence 8999999999999999999875 22356788888875543333334 469999999854
No 262
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.07 E-value=2e-05 Score=76.16 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=64.0
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDL 220 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDL 220 (553)
...+.||+|.. +.++ ......+|++++|.|+.+... .+...+.....+.|+++|.||+||
T Consensus 67 ~l~iwDTaG~~-----------~~~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL 132 (195)
T cd01873 67 SLRLWDTFGDH-----------DKDR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDL 132 (195)
T ss_pred EEEEEeCCCCh-----------hhhh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 45688998742 1111 123568999999999987541 233444443346799999999998
Q ss_pred CCCC--------------------CChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 221 LPKG--------------------TDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 221 l~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.... ...+...+|. ...+ ...+.+||++|.|++++++.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a------~~~~-~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 133 RYADLDEVNRARRPLARPIKNADILPPETGRAVA------KELG-IPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccchhhhcccccccccccCCccCHHHHHHHH------HHhC-CEEEEcCCCCCCCHHHHHHHHHH
Confidence 6421 1111222221 2234 35788999999999999887653
No 263
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.06 E-value=4.4e-06 Score=89.34 Aligned_cols=38 Identities=34% Similarity=0.407 Sum_probs=30.5
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEE
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQ 325 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~ 325 (553)
++.+||.||||||||+|+|.+. ...++++|+||+++..
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~--------------~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLA--------------DVEIANYPFTTIDPNV 40 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--------------cccccCCCCcceeeee
Confidence 6899999999999999999864 2235778999986543
No 264
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.06 E-value=2.9e-05 Score=85.17 Aligned_cols=117 Identities=14% Similarity=0.104 Sum_probs=68.2
Q ss_pred ceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChh---hHHHHHHHhCCCCE
Q 008807 135 TVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGS---FLARIRDLAGANPI 211 (553)
Q Consensus 135 d~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s---~~~~l~~~~~~~pv 211 (553)
+.....+...+++..++||+|. +.|...+...+..+|++++|||+.+.... ....+....+.+++
T Consensus 96 d~~~~~~~~~~~~i~~iDTPGh------------~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~i 163 (474)
T PRK05124 96 DVAYRYFSTEKRKFIIADTPGH------------EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHL 163 (474)
T ss_pred EeeEEEeccCCcEEEEEECCCc------------HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCce
Confidence 4444444455567889999873 23433334445799999999999764311 11122333345678
Q ss_pred EEEEEcccCCCCCCC-hhhHHHHHHHHHhhcc-cCceeEEEeccCCccChhhhH
Q 008807 212 ILVVTKVDLLPKGTD-FNCVGDWVVEATTKKK-LNVLSVHLTSSKSLAGIVGVA 263 (553)
Q Consensus 212 IlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~-l~~~~vi~iSAk~g~gi~~Ll 263 (553)
|+|+||+|+...+.. ...+.+.+...+.... .....++.+||++|.|++++.
T Consensus 164 IvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 164 VVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred EEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 999999999753321 1222222211111111 223568999999999998653
No 265
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.1e-05 Score=81.54 Aligned_cols=136 Identities=17% Similarity=0.239 Sum_probs=80.1
Q ss_pred CCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEE----EecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 97 AVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRC----RLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 97 ~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc----~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
..|+|..|+.. ..|+. ...|.+| .+. ....|+|.+|. ..+...|
T Consensus 56 ~i~kC~~c~~~--------~~y~~--------------~~~C~~cg~~~~l~-R~VSfVDaPGH--------e~LMATM- 103 (415)
T COG5257 56 KIYKCPECYRP--------ECYTT--------------EPKCPNCGAETELV-RRVSFVDAPGH--------ETLMATM- 103 (415)
T ss_pred ceEeCCCCCCC--------ccccc--------------CCCCCCCCCCccEE-EEEEEeeCCch--------HHHHHHH-
Confidence 36889988865 23443 3467777 333 23678888763 1223333
Q ss_pred HHHHHhhhcccEEEEEcccCCC--ChhhHHHH--HHHhCCCCEEEEEEcccCCCCCCChh---hHHHHHHHHHhhcccCc
Q 008807 173 EKLSHLRREKALIVKLVDIVDF--NGSFLARI--RDLAGANPIILVVTKVDLLPKGTDFN---CVGDWVVEATTKKKLNV 245 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~--~~s~~~~l--~~~~~~~pvIlVlNKiDLl~~~~~~~---~~~~~~~~~~~~~~l~~ 245 (553)
|+-+. --|-.|+|+++..+ ...-.+.| .++.+-+.+|+|-||+||+.++...+ .+++|+. -.-..-
T Consensus 104 --LsGAA-lMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~Fvk----Gt~Ae~ 176 (415)
T COG5257 104 --LSGAA-LMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVK----GTVAEN 176 (415)
T ss_pred --hcchh-hhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhc----ccccCC
Confidence 22221 22455667777643 22222222 23457788999999999997753222 2222221 111112
Q ss_pred eeEEEeccCCccChhhhHHHHHHhhc
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
..++++||.++.|++.|+++|.++.+
T Consensus 177 aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 177 APIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred CceeeehhhhccCHHHHHHHHHHhCC
Confidence 46899999999999999999998754
No 266
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.04 E-value=3.9e-05 Score=86.41 Aligned_cols=109 Identities=18% Similarity=0.082 Sum_probs=68.6
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhh-HHHHHHH-hCCCCEEEEEEcccCCCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSF-LARIRDL-AGANPIILVVTKVDLLPK 223 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~-~~~l~~~-~~~~pvIlVlNKiDLl~~ 223 (553)
+...++||+|.. +|......++..+|.+|+|||+++..... ...+... ..+.|+++|+||+|+...
T Consensus 74 ~~lnLiDTPGh~------------dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 74 YILNLIDTPGHV------------DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred EEEEEEECCCcH------------HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcc
Confidence 446799999853 34444555567899999999998743211 1122111 146789999999998643
Q ss_pred CCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 224 GTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
. .....+-+.+. .++...+++.+||++|.|+++|++.|.+.++
T Consensus 142 ~--~~~v~~ei~~~---lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 142 D--PERVKQEIEDV---IGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred c--HHHHHHHHHHH---hCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 2 11111111111 1222235899999999999999999876543
No 267
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.04 E-value=3.5e-05 Score=86.70 Aligned_cols=107 Identities=22% Similarity=0.138 Sum_probs=68.1
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChh-hHHHHHH-HhCCCCEEEEEEcccCCCCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGS-FLARIRD-LAGANPIILVVTKVDLLPKG 224 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s-~~~~l~~-~~~~~pvIlVlNKiDLl~~~ 224 (553)
...++||+|.. .|......++..+|.+|+|+|+++.... -...+.. ...+.|+++|+||+|+....
T Consensus 71 ~l~liDTPG~~------------dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~ 138 (595)
T TIGR01393 71 VLNLIDTPGHV------------DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD 138 (595)
T ss_pred EEEEEECCCcH------------HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC
Confidence 46799998853 3444455567789999999999874321 1111111 11467999999999985432
Q ss_pred CChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 225 TDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.....+-+.+. .++....++.+||++|.|+++|++.|.+.+
T Consensus 139 --~~~~~~el~~~---lg~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 139 --PERVKKEIEEV---IGLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred --HHHHHHHHHHH---hCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 12111111111 122223589999999999999999987654
No 268
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.03 E-value=3.7e-05 Score=76.08 Aligned_cols=140 Identities=9% Similarity=-0.009 Sum_probs=75.0
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
.+..+|...+|++++++.......... .. .....++-.+ ..+....++||+|. +.
T Consensus 41 ~i~ivG~~~~GKstl~~~l~~~~~~~~----~~------~~~g~i~i~~-~~~~~i~~vDtPg~--------------~~ 95 (225)
T cd01882 41 VVAVVGPPGVGKTTLIKSLVKNYTKQN----IS------DIKGPITVVT-GKKRRLTFIECPND--------------IN 95 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCc----cc------cccccEEEEe-cCCceEEEEeCCch--------------HH
Confidence 567778888888888865432211100 00 0001111111 23445678888642 11
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCE-EEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEE
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPI-ILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVH 249 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pv-IlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi 249 (553)
. +....+.+|+|++|+|+..........+...+ .+.|. ++|+||+|++.+......+.+-+.+.+..+.+...+++
T Consensus 96 ~-~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~ 174 (225)
T cd01882 96 A-MIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLF 174 (225)
T ss_pred H-HHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 2 22335689999999999764433333333332 24674 55999999985432222222223222222334456899
Q ss_pred EeccCCccC
Q 008807 250 LTSSKSLAG 258 (553)
Q Consensus 250 ~iSAk~g~g 258 (553)
++||++..-
T Consensus 175 ~iSa~~~~~ 183 (225)
T cd01882 175 YLSGIVHGR 183 (225)
T ss_pred EEeeccCCC
Confidence 999998743
No 269
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.03 E-value=4.7e-06 Score=81.27 Aligned_cols=69 Identities=22% Similarity=0.070 Sum_probs=41.3
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCCh--hh----hhhhhcC-----------CccCCCCCceeecEEEEeecCC--cE
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDP--AA----AMAQKYR-----------PIQSAVPGTTLGPIQIDAFLGG--GK 334 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~--~~----~~~~~~~-----------~~~S~~PGTT~~~i~i~~~~~~--~~ 334 (553)
+++++|.+|+|||||+|+|+.....-.. .. ...+..+ ......+|+|++.........+ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4789999999999999999976433210 00 0000000 0011237899986555433333 36
Q ss_pred EEEcCCcc
Q 008807 335 LYDTPGVH 342 (553)
Q Consensus 335 liDTPGi~ 342 (553)
|+||||..
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999963
No 270
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.99 E-value=1.5e-05 Score=69.91 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=69.4
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCc-cccHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQ-FVSADEL 171 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~-~~l~e~~ 171 (553)
++...|.+.+|++++++..-.....-+....+.| +....+.+........++||+|+. .... ....+.+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T-------~~~~~~~~~~~~~~~~~vDtpG~~---~~~~~~~~~~~~ 70 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTT-------RDPVYGQFEYNNKKFILVDTPGIN---DGESQDNDGKEI 70 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSS-------SSEEEEEEEETTEEEEEEESSSCS---SSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccce-------eeeeeeeeeeceeeEEEEeCCCCc---ccchhhHHHHHH
Confidence 3567788999999999887753221222222333 355555666666667899998753 2211 1111234
Q ss_pred HHHHHHhhhcccEEEEEcccCCCChhhHHHHH-HHhCCCCEEEEEEc
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNGSFLARIR-DLAGANPIILVVTK 217 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~-~~~~~~pvIlVlNK 217 (553)
.+.++.+ ..+|++++|+|+.+....-...+. .+-..+|+++|+||
T Consensus 71 ~~~~~~~-~~~d~ii~vv~~~~~~~~~~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 71 RKFLEQI-SKSDLIIYVVDASNPITEDDKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp HHHHHHH-CTESEEEEEEETTSHSHHHHHHHHHHHHTTSEEEEEEES
T ss_pred HHHHHHH-HHCCEEEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcC
Confidence 4555555 799999999998774322222332 22257899999998
No 271
>PRK00049 elongation factor Tu; Reviewed
Probab=97.99 E-value=6e-05 Score=80.86 Aligned_cols=103 Identities=14% Similarity=0.005 Sum_probs=59.3
Q ss_pred cCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEE-EEEEcccC
Q 008807 144 LSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPII-LVVTKVDL 220 (553)
Q Consensus 144 l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvI-lVlNKiDL 220 (553)
.+.+..++||+|. ..|...+...+..+|++++|||+.+.......++..++ .+.|.+ +++||+|+
T Consensus 73 ~~~~i~~iDtPG~------------~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 73 EKRHYAHVDCPGH------------ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCeEEEEEECCCH------------HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 3456789999874 24555555556799999999999864322222222221 357865 58999999
Q ss_pred CCCCCChhhHHHHHHHHHhhccc--CceeEEEeccCCccC
Q 008807 221 LPKGTDFNCVGDWVVEATTKKKL--NVLSVHLTSSKSLAG 258 (553)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~l--~~~~vi~iSAk~g~g 258 (553)
.+.+...+.+...+...+...++ ....++++||+++.+
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 141 VDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 75332122222222222222122 124578999998764
No 272
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.98 E-value=8e-06 Score=84.83 Aligned_cols=36 Identities=33% Similarity=0.413 Sum_probs=29.1
Q ss_pred eEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecE
Q 008807 275 VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPI 324 (553)
Q Consensus 275 v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i 324 (553)
+.+||.||||||||+|+|.+. ...++++|+||+++.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~--------------~~~~~~~pftT~~p~ 36 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLA--------------DVEIANYPFTTIDPN 36 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCC--------------CCcccCCCCccccce
Confidence 468999999999999999864 224678899998754
No 273
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=3.6e-05 Score=82.80 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=70.6
Q ss_pred cEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHhCCCCEEEEEEcccCCCCCC
Q 008807 148 HMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLAGANPIILVVTKVDLLPKGT 225 (553)
Q Consensus 148 ~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~~~~pvIlVlNKiDLl~~~~ 225 (553)
..++||+|.+.|..+ .+..+...|-+|+|||+..-.. ....-...+-.+..+|.|+||+|+-..+
T Consensus 127 LNLIDTPGHvDFs~E------------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~ad- 193 (650)
T KOG0462|consen 127 LNLIDTPGHVDFSGE------------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSAD- 193 (650)
T ss_pred EEeecCCCcccccce------------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCC-
Confidence 468999998766533 3344557788999999987432 2222222222466789999999986554
Q ss_pred ChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 226 DFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
.+++..-+++.+ .+...+++.+|||+|+|+++++++|-+..+
T Consensus 194 -pe~V~~q~~~lF---~~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 194 -PERVENQLFELF---DIPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred -HHHHHHHHHHHh---cCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 333333332222 234457999999999999999999876544
No 274
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.97 E-value=6e-05 Score=70.13 Aligned_cols=142 Identities=13% Similarity=0.055 Sum_probs=79.6
Q ss_pred ccccCCCcccccCcccccc-CCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHH
Q 008807 93 KVNSAVASCYGCGAPLQTS-ESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~-d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
++..+|..-.|+.++++.. ...-+..+++. . ...+......+ ....+.||+|.. ..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~----~-------~~~~~~i~~~~~~~~l~i~D~~g~~----------~~ 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPE----G-------GRFKKEVLVDGQSHLLLIRDEGGAP----------DA 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCC----c-------cceEEEEEECCEEEEEEEEECCCCC----------ch
Confidence 3566778888899988743 21111111110 0 11222222222 235678887641 11
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCC---CChhhHHHHHHHHHh
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKG---TDFNCVGDWVVEATT 239 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~---~~~~~~~~~~~~~~~ 239 (553)
.....+|.+++|.|+++.. ..+.+.+.... .+.|+++|.||+||.... .......++.
T Consensus 61 -------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~----- 128 (158)
T cd04103 61 -------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLC----- 128 (158)
T ss_pred -------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHH-----
Confidence 1235789999999999854 23334444332 346999999999985321 1111112221
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
. ......++.+||+++.|+++++..+.+
T Consensus 129 ~-~~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 129 A-DMKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred H-HhCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 1 122145788999999999999887754
No 275
>PRK13768 GTPase; Provisional
Probab=97.97 E-value=3.5e-05 Score=77.58 Aligned_cols=121 Identities=22% Similarity=0.227 Sum_probs=69.5
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh--hhHH-H-HH---HHhCCCCEEEEEEcc
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG--SFLA-R-IR---DLAGANPIILVVTKV 218 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~-~-l~---~~~~~~pvIlVlNKi 218 (553)
....++||+|...+... ......+.+.+... .+++|++|+|++.... ++.. . +. ....+.|+++|+||+
T Consensus 97 ~~~~~~d~~g~~~~~~~--~~~~~~~~~~l~~~--~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~ 172 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF--RESGRKLVERLSGS--SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKA 172 (253)
T ss_pred CCEEEEeCCcHHHHHhh--hHHHHHHHHHHHhc--CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhH
Confidence 35789999875321100 11223333333321 1899999999975431 1111 1 11 112468999999999
Q ss_pred cCCCCCCChhhHHHHHHH------HHh----------------hcccC-ceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 219 DLLPKGTDFNCVGDWVVE------ATT----------------KKKLN-VLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 219 DLl~~~~~~~~~~~~~~~------~~~----------------~~~l~-~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
|++.... .....+++.+ .+. ...++ ...++.+||+++.|+++|++.|.+.+.
T Consensus 173 D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 173 DLLSEEE-LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhcCchh-HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9987653 2222232221 000 01122 246899999999999999999987653
No 276
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.96 E-value=1.2e-05 Score=78.74 Aligned_cols=60 Identities=23% Similarity=0.260 Sum_probs=33.7
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccCCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHLHH 345 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~~~ 345 (553)
+++++|.+|+||||++|+|++....+.. .+ ....|........... ...||||||+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~-----------~~-~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSG-----------SS-AKSVTQECQKYSGEVDGRQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS-------------TT-TSS--SS-EEEEEEETTEEEEEEE--SSEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeec-----------cc-cCCcccccceeeeeecceEEEEEeCCCCCCCc
Confidence 6899999999999999999987543311 01 1123333222221112 34699999996543
No 277
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.96 E-value=1.5e-05 Score=71.69 Aligned_cols=55 Identities=36% Similarity=0.437 Sum_probs=39.1
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC----cEEEEcCCcc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG----GKLYDTPGVH 342 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~----~~liDTPGi~ 342 (553)
+++++|.+|+|||||+|+|.... ...+..|++|.+........++ ..++||||..
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK--------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 68999999999999999998752 2234557788875553222223 3579999943
No 278
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=2.9e-06 Score=88.14 Aligned_cols=114 Identities=21% Similarity=0.183 Sum_probs=67.1
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceee--cEEEEeecCC----cEEEEcCCccCC---
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLG--PIQIDAFLGG----GKLYDTPGVHLH--- 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~--~i~i~~~~~~----~~liDTPGi~~~--- 344 (553)
+++++|.+|.|||||||+|+........ .....+..|--|.. .-...+..+| ..|+||||+...
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~~l~~~~-------~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 23 TLMVVGESGLGKSTFINSLFLTDLSGNR-------EVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred EEEEecCCCccHHHHHHHHHhhhccCCc-------ccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence 8999999999999999999987333210 00111111212221 1112222222 369999999743
Q ss_pred ----CccccccCcCcccccccccccCCceeecccccccCccccccccCCcEEEEe-eeEeEEee
Q 008807 345 ----HRQAAVVHAEDLPALAPQSRLRGQSFAVISETETNNEFKSHGLNGFTIFWG-GLVRIDLL 403 (553)
Q Consensus 345 ----~~~~~~l~~~~l~~l~p~~~l~~~~~~~~~~h~e~~c~~~~~~~g~sl~~G-GL~rid~l 403 (553)
.-+.++++.+.-.++.-+.++.+..+..++.| |..+.+.| +| ||--+|+.
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH----~cLYFI~P-----~ghgL~p~Di~ 150 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVH----CCLYFISP-----TGHGLKPLDIE 150 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceE----EEEEEeCC-----CCCCCcHhhHH
Confidence 22344555555555666677777667777777 77777766 33 66555553
No 279
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.95 E-value=0.00015 Score=66.88 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=87.3
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEE---EecCCccEEEecCCCCCccCCCcc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRC---RLLSHGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc---~~l~~~~~~~dTaG~vgf~~~~~~ 165 (553)
++..++...|..++|+.+.+....+..+--++ .+.|-+. ....+...+.|++|.
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~--------------pt~gf~Iktl~~~~~~L~iwDvGGq--------- 70 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTIS--------------PTLGFQIKTLEYKGYTLNIWDVGGQ--------- 70 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccccC--------------CccceeeEEEEecceEEEEEEcCCc---------
Confidence 34668899999999999999877765322221 2222222 334566788999774
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHH-----hCCCCEEEEEEcccCCCCCCChhhHHHHH-HHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDL-----AGANPIILVVTKVDLLPKGTDFNCVGDWV-VEA 237 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~-----~~~~pvIlVlNKiDLl~~~~~~~~~~~~~-~~~ 237 (553)
..+++.=..+.+.+|.+|+|||.+|.. .+-...+..+ +.+.|++++.||.|+.+.- ..+.+...+ .+.
T Consensus 71 ---~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l-~~~~i~~~~~L~~ 146 (185)
T KOG0073|consen 71 ---KTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGAL-SLEEISKALDLEE 146 (185)
T ss_pred ---chhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcccc-CHHHHHHhhCHHH
Confidence 234444445567889999999998753 1111122222 1357899999999986432 222222111 011
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHH
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEI 266 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L 266 (553)
+. +... ..++-.||.+|.++.+=++.|
T Consensus 147 l~-ks~~-~~l~~cs~~tge~l~~gidWL 173 (185)
T KOG0073|consen 147 LA-KSHH-WRLVKCSAVTGEDLLEGIDWL 173 (185)
T ss_pred hc-cccC-ceEEEEeccccccHHHHHHHH
Confidence 11 1122 457788999997665444443
No 280
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.94 E-value=8e-05 Score=65.99 Aligned_cols=145 Identities=17% Similarity=0.022 Sum_probs=80.6
Q ss_pred CCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec--CCccEEEecCCCCCccCCCccccHHHHHHH
Q 008807 97 AVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL--SHGHMITAVGGNGGYAGGKQFVSADELREK 174 (553)
Q Consensus 97 ~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l--~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~ 174 (553)
.|...+|++++++........ ....-.+. .+..+...... .....++|++|.. .....
T Consensus 2 iG~~~~GKStl~~~l~~~~~~--~~~~~~t~------~~~~~~~~~~~~~~~~~~l~D~~g~~------------~~~~~ 61 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFV--PEEYETTI------IDFYSKTIEVDGKKVKLQIWDTAGQE------------RFRSL 61 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcC--Ccccccch------hheeeEEEEECCEEEEEEEEecCChH------------HHHhH
Confidence 467788888988866543221 00000000 02233333221 2346788987642 11111
Q ss_pred HHHhhhcccEEEEEcccCCCChhhH-HH------HHHHhCCCCEEEEEEcccCCCCCCChhhH-HHHHHHHHhhcccCce
Q 008807 175 LSHLRREKALIVKLVDIVDFNGSFL-AR------IRDLAGANPIILVVTKVDLLPKGTDFNCV-GDWVVEATTKKKLNVL 246 (553)
Q Consensus 175 l~~~~~~adlIl~VVD~~d~~~s~~-~~------l~~~~~~~pvIlVlNKiDLl~~~~~~~~~-~~~~~~~~~~~~l~~~ 246 (553)
.......+|.+++|+|+.++..... .. ........|+++|+||+|+.+........ ... . ......
T Consensus 62 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~-----~-~~~~~~ 135 (157)
T cd00882 62 RRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQ-----L-AKELGV 135 (157)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHH-----H-HhhcCC
Confidence 2344568999999999987542111 11 11112468999999999998654322111 011 1 112225
Q ss_pred eEEEeccCCccChhhhHHHHH
Q 008807 247 SVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
.++.+|+.++.|++++++.|.
T Consensus 136 ~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 136 PYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cEEEEecCCCCChHHHHHHHh
Confidence 689999999999999887764
No 281
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.93 E-value=7e-06 Score=79.84 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=49.8
Q ss_pred ccChhhhHHHHHHhh--cc--cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCc-cCCCCCceeecEEEEee-
Q 008807 256 LAGIVGVASEIQKEK--KG--RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPI-QSAVPGTTLGPIQIDAF- 329 (553)
Q Consensus 256 g~gi~~Ll~~L~~~~--~g--~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~-~S~~PGTT~~~i~i~~~- 329 (553)
-.|++.+++.+.... .| -++++||.+|.|||||+|.|......+.. .... .-++|-||-=.+--..+
T Consensus 26 yvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s-------~~~~~~~p~pkT~eik~~thvie 98 (336)
T KOG1547|consen 26 YVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSS-------SSDNSAEPIPKTTEIKSITHVIE 98 (336)
T ss_pred cccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhcc-------CCCcccCcccceEEEEeeeeeee
Confidence 358999888886532 23 38999999999999999999986443311 0111 12456555311111111
Q ss_pred cC----CcEEEEcCCccC
Q 008807 330 LG----GGKLYDTPGVHL 343 (553)
Q Consensus 330 ~~----~~~liDTPGi~~ 343 (553)
.+ +..+||||||-.
T Consensus 99 E~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 99 EKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ecceEEEEEEecCCCccc
Confidence 12 236999999964
No 282
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.93 E-value=1.9e-05 Score=72.67 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=36.0
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC----cEEEEcCCcc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG----GKLYDTPGVH 342 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~----~~liDTPGi~ 342 (553)
+++++|.+|||||||+|+|++.... .+..|++|.+........++ ..++||||-.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD--------------NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--------------ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH
Confidence 5899999999999999999865211 23346666553222211122 3599999953
No 283
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.92 E-value=1.3e-05 Score=73.63 Aligned_cols=57 Identities=32% Similarity=0.365 Sum_probs=39.4
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
++.++|.+|+|||||+|+|.+... ....+..+|+|.....+. ......++||||+..
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~------------~~~~~~~~~~t~~~~~~~-~~~~~~~~D~~g~~~ 57 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKK------------LARTSKTPGKTQLINFFN-VNDKFRLVDLPGYGY 57 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc------------eeeecCCCCcceeEEEEE-ccCeEEEecCCCccc
Confidence 478999999999999999995311 122456677877532222 334567999999754
No 284
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.92 E-value=9.1e-05 Score=83.27 Aligned_cols=116 Identities=15% Similarity=0.080 Sum_probs=71.7
Q ss_pred EEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEc
Q 008807 140 RCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTK 217 (553)
Q Consensus 140 Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNK 217 (553)
.+.+.++...++||+|. ++|...+..++..+|.+++|||+.+-.......+...+ .+.|+|+|+||
T Consensus 58 ~v~~~~~kinlIDTPGh------------~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNK 125 (594)
T TIGR01394 58 AIRYNGTKINIVDTPGH------------ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINK 125 (594)
T ss_pred EEEECCEEEEEEECCCH------------HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEEC
Confidence 44556667789999874 34555566677889999999999864322222222111 36789999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHhh-----cccCceeEEEeccCCcc----------ChhhhHHHHHHhh
Q 008807 218 VDLLPKGTDFNCVGDWVVEATTK-----KKLNVLSVHLTSSKSLA----------GIVGVASEIQKEK 270 (553)
Q Consensus 218 iDLl~~~~~~~~~~~~~~~~~~~-----~~l~~~~vi~iSAk~g~----------gi~~Ll~~L~~~~ 270 (553)
+|+.... ...+.+-+.+.+.. ..+. ..++++||++|+ |++.|++.|.+.+
T Consensus 126 iD~~~a~--~~~v~~ei~~l~~~~g~~~e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 126 IDRPSAR--PDEVVDEVFDLFAELGADDEQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred CCCCCcC--HHHHHHHHHHHHHhhcccccccc-CcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 9986432 11111111111111 1122 358899999997 6777877776654
No 285
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.92 E-value=1.4e-05 Score=77.19 Aligned_cols=56 Identities=29% Similarity=0.220 Sum_probs=37.7
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-ecC--CcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-FLG--GGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~~~--~~~liDTPGi~ 342 (553)
..+.++|.+|||||||+|+|.+... .++..+++|.+...... +.+ ...++||||+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~ 100 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADV--------------YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFI 100 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchh--------------ccCCccceeccceeEEEEecCCceEEEeCCCccc
Confidence 4899999999999999999997521 12334556655332221 112 34689999985
No 286
>PLN03127 Elongation factor Tu; Provisional
Probab=97.91 E-value=8.7e-05 Score=80.75 Aligned_cols=120 Identities=11% Similarity=0.001 Sum_probs=65.2
Q ss_pred cccccCCCcccccCccccccCCC--CCcccCCchhh------HhhhccCccceEEEEEEecCCccEEEecCCCCCccCCC
Q 008807 92 LKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYE------LKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGK 163 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~------t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~ 163 (553)
..+...|-..+||+++....... ..|-.....|+ ..++.+-+.+.....+...+.+..++||+|..
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~------ 135 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA------ 135 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc------
Confidence 45788888899999988654210 00110000111 11122223344333333444567899998852
Q ss_pred ccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCC-EEEEEEcccCCCC
Q 008807 164 QFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANP-IILVVTKVDLLPK 223 (553)
Q Consensus 164 ~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~p-vIlVlNKiDLl~~ 223 (553)
.|...+......+|++++|||+.+.......++..++ .+.| +|+|+||+|++++
T Consensus 136 ------~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 136 ------DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred ------chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH
Confidence 2333333334579999999999764322222222221 3567 4788999999853
No 287
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.91 E-value=5.4e-05 Score=72.98 Aligned_cols=169 Identities=12% Similarity=0.002 Sum_probs=93.0
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
++.++|.+.+|+++.+++.-.. ..+.... .....+++....++...++...++||||+..... ........+.
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~-~~~~~~~-----~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~-~~~~~~~~i~ 74 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR-EVFESKL-----SASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV-SPEQLSKEIV 74 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC-Ccccccc-----CCCCcccccceeeEEECCeEEEEEECcCCCCccC-ChHHHHHHHH
Confidence 4678899999999999876543 1221110 0011223444445556667789999998643211 1111223344
Q ss_pred HHHHHhhhcccEEEEEcccCCCChh---hHHHHHHHhCC---CCEEEEEEcccCCCCCCChhhH---HHHHHHHHhhccc
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGS---FLARIRDLAGA---NPIILVVTKVDLLPKGTDFNCV---GDWVVEATTKKKL 243 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s---~~~~l~~~~~~---~pvIlVlNKiDLl~~~~~~~~~---~~~~~~~~~~~~l 243 (553)
+.+.......|+||+|+|+.++... .+..+....+. +++++|+|++|-+......+.+ ..++...+. ..
T Consensus 75 ~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~--~c 152 (196)
T cd01852 75 RCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLE--KC 152 (196)
T ss_pred HHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHH--Hh
Confidence 4444445678999999998875432 33444443342 6789999999987654211110 011111111 11
Q ss_pred CceeEEEe-----ccCCccChhhhHHHHHHhhc
Q 008807 244 NVLSVHLT-----SSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 244 ~~~~vi~i-----SAk~g~gi~~Ll~~L~~~~~ 271 (553)
+ ...+.+ |+.++.++++|++.|.+..+
T Consensus 153 ~-~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 153 G-GRYVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred C-CeEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 1 122223 35567788888888876554
No 288
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.90 E-value=1.7e-05 Score=72.89 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=35.5
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEE--EEee-cCCcEEEEcCCcc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQ--IDAF-LGGGKLYDTPGVH 342 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~--i~~~-~~~~~liDTPGi~ 342 (553)
.+.++|.+|||||||+|+|.+..... ......+|+|.+... +... .....++||||..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~-----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDR-----------LPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCccccc-----------chhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 57899999999999999998642110 001123567765322 2211 1234689999963
No 289
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.90 E-value=1.7e-05 Score=73.49 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=35.5
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecE--EEEee---cCCcEEEEcCCcc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPI--QIDAF---LGGGKLYDTPGVH 342 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i--~i~~~---~~~~~liDTPGi~ 342 (553)
.++++|.+|||||||+|+|..... .....+++|.+.. .+... .....++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV--------------AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc--------------ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 478999999999999999986421 1123456666422 22211 1234699999963
No 290
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.90 E-value=9.1e-05 Score=72.33 Aligned_cols=162 Identities=13% Similarity=0.046 Sum_probs=93.4
Q ss_pred ccccccCCCcccccCcccc-ccCCCC-CcccCCchhhHhhhccCccceEEEEEEec--CCccEEEecCCCCCccCCCccc
Q 008807 91 VLKVNSAVASCYGCGAPLQ-TSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLL--SHGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ-~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l--~~~~~~~dTaG~vgf~~~~~~~ 166 (553)
..++..+|...+|+.++++ ...... +-|.+.--. +.....+... .....+.||+|..
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~----------~~~~~~~~~~~~~i~i~~~Dt~g~~--------- 69 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGV----------EVHPLKFYTNCGPICFNVWDTAGQE--------- 69 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce----------EEEEEEEEECCeEEEEEEEECCCch---------
Confidence 3478899999999999995 332211 122211000 1111111111 1245678887632
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
.+..........++.+++|+|+++.. ..+...+.....+.|+++|.||+|+........ ...+. .
T Consensus 70 ---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~-~~~~~------~ 139 (215)
T PTZ00132 70 ---KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKAR-QITFH------R 139 (215)
T ss_pred ---hhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHH-HHHHH------H
Confidence 22222334456789999999998643 123333433345789999999999864332111 11221 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHhh-cccceEEeccCC
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKEK-KGRDVYILGSAN 282 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~-~g~~v~ivG~~N 282 (553)
..+ ...+.+||+++.|+++++..|.+.+ ....++++..|=
T Consensus 140 ~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~ 180 (215)
T PTZ00132 140 KKN-LQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPA 180 (215)
T ss_pred HcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhcccceecCCcc
Confidence 122 3568899999999998877776543 345778888776
No 291
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.88 E-value=0.00012 Score=74.53 Aligned_cols=107 Identities=17% Similarity=0.021 Sum_probs=65.7
Q ss_pred cceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCE
Q 008807 134 KTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPI 211 (553)
Q Consensus 134 rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pv 211 (553)
.+.....+.+.+++..++||+|.. .|.......+..+|.+++|||+.+........+...+ .++|+
T Consensus 52 i~~~~~~~~~~~~~i~liDTPG~~------------df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ 119 (270)
T cd01886 52 IQSAATTCFWKDHRINIIDTPGHV------------DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPR 119 (270)
T ss_pred eeccEEEEEECCEEEEEEECCCcH------------HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE
Confidence 355556777777888999998742 2444455667789999999999875433222222221 36899
Q ss_pred EEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCc
Q 008807 212 ILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSL 256 (553)
Q Consensus 212 IlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g 256 (553)
++++||+|+...+ ...+.+-+.+.+ ....+..++++|+..+
T Consensus 120 ivviNK~D~~~a~--~~~~~~~l~~~l--~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 120 IAFVNKMDRTGAD--FFRVVEQIREKL--GANPVPLQLPIGEEDD 160 (270)
T ss_pred EEEEECCCCCCCC--HHHHHHHHHHHh--CCCceEEEeccccCCC
Confidence 9999999987432 222222222211 1123355788998754
No 292
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.88 E-value=4.5e-05 Score=73.71 Aligned_cols=161 Identities=15% Similarity=0.073 Sum_probs=87.9
Q ss_pred ccccCCCcccccCccccccCCCC---CcccCCchhhHhhhccCccceEEEEEEec-CCccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA---PGYVDPDTYELKKKHHQFKTVLCGRCRLL-SHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~---~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++...|...+|++++++..-... .|+...+...+- ..+...... .....++||+|..... ...
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t--------~~~~~~~~~~~~~l~l~DtpG~~~~~-----~~~ 69 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETT--------MKRTPYPHPKFPNVTLWDLPGIGSTA-----FPP 69 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccc--------cCceeeecCCCCCceEEeCCCCCccc-----CCH
Confidence 45677889999999988765321 233322211110 011111111 2356799998753211 123
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC---hhhHHHHHHHhCCCCEEEEEEcccCCCCCCC--------hhh----HHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN---GSFLARIRDLAGANPIILVVTKVDLLPKGTD--------FNC----VGDW 233 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~---~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~--------~~~----~~~~ 233 (553)
+.+.+.+ ...++|+++++.|.+ +. ..++..+.. ..+|+++|+||+|+...... .+. +.+.
T Consensus 70 ~~~l~~~--~~~~~d~~l~v~~~~-~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~ 144 (197)
T cd04104 70 DDYLEEM--KFSEYDFFIIISSTR-FSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN 144 (197)
T ss_pred HHHHHHh--CccCcCEEEEEeCCC-CCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHH
Confidence 3332222 145789988886643 32 233344433 25799999999999643221 111 1122
Q ss_pred HHHHHhhcccCceeEEEeccC--CccChhhhHHHHHHhhc
Q 008807 234 VVEATTKKKLNVLSVHLTSSK--SLAGIVGVASEIQKEKK 271 (553)
Q Consensus 234 ~~~~~~~~~l~~~~vi~iSAk--~g~gi~~Ll~~L~~~~~ 271 (553)
+.+.+...+.....|+.+|+. .++++..|.+.|...++
T Consensus 145 ~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 145 CLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred HHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 222222223445679999998 67999999888876554
No 293
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.83 E-value=1.6e-05 Score=81.32 Aligned_cols=56 Identities=30% Similarity=0.347 Sum_probs=43.6
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceee----cEEEEeecCCcEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLG----PIQIDAFLGGGKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~----~i~i~~~~~~~~liDTPGi~~~ 344 (553)
+|-+||.||||||||||++... ++.++++|-||+- .+++. ......+.|-||+...
T Consensus 161 DVGLVG~PNaGKSTlls~vS~A--------------kPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEG 220 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAA--------------KPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEG 220 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhc--------------CCcccCCccccccCcccEEEec-CCCcEEEecCcccccc
Confidence 7899999999999999999753 5678899999984 33431 2234568899999865
No 294
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.81 E-value=5.7e-05 Score=69.66 Aligned_cols=148 Identities=15% Similarity=0.144 Sum_probs=86.9
Q ss_pred cccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
+..+|....|++++++..-.. .|. .....|. ..+..+..+...+. ...+.|++|.. .+
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~--~~~-~~~~~t~-----~~~~~~~~~~~~~~~~~l~i~D~~g~~------------~~ 61 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING--EFP-ENYIPTI-----GIDSYSKEVSIDGKPVNLEIWDTSGQE------------RF 61 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS--STT-SSSETTS-----SEEEEEEEEEETTEEEEEEEEEETTSG------------GG
T ss_pred EEEECCCCCCHHHHHHHHHhh--ccc-ccccccc-----ccccccccccccccccccccccccccc------------cc
Confidence 345677788888888654422 111 1110110 01344444444322 35688887531 22
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC-CCCEEEEEEcccCCCC-CCChhhHHHHHHHHHhhcccC
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG-ANPIILVVTKVDLLPK-GTDFNCVGDWVVEATTKKKLN 244 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~-~~pvIlVlNKiDLl~~-~~~~~~~~~~~~~~~~~~~l~ 244 (553)
..........+|.++++.|..+.. ..+.+.+..... +.|+++|.||+|+... ....+...++. ...+
T Consensus 62 ~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~------~~~~ 135 (162)
T PF00071_consen 62 DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFA------KELG 135 (162)
T ss_dssp HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHH------HHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHH------HHhC
Confidence 222234466899999999988643 234444554444 5799999999998763 22333334442 2234
Q ss_pred ceeEEEeccCCccChhhhHHHHHH
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+.+||+++.|+.+++..+.+
T Consensus 136 -~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 136 -VPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp -SEEEEEBTTTTTTHHHHHHHHHH
T ss_pred -CEEEEEECCCCCCHHHHHHHHHH
Confidence 56788999999999998877654
No 295
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.80 E-value=3.9e-05 Score=80.90 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=53.6
Q ss_pred hHHHHHHhhccc-ceEEeccCCCChhHHHHHHHhhhCCCChh--hhhhhhcCCccCCCCC---ceeecEE-------EEe
Q 008807 262 VASEIQKEKKGR-DVYILGSANVGKSAFINALLKKMGERDPA--AAMAQKYRPIQSAVPG---TTLGPIQ-------IDA 328 (553)
Q Consensus 262 Ll~~L~~~~~g~-~v~ivG~~NVGKSTLIN~L~~~~~~k~~~--~~~~~~~~~~~S~~PG---TT~~~i~-------i~~ 328 (553)
+.+.|.+.-.|. .+.++|..|+|||||||++.+.+....-. ....+...-++++.+| ||.++.- +..
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 344454433343 78899999999999999999885443211 0011112236788999 9988654 222
Q ss_pred ec---CCcEEEEcCCccCCC
Q 008807 329 FL---GGGKLYDTPGVHLHH 345 (553)
Q Consensus 329 ~~---~~~~liDTPGi~~~~ 345 (553)
.. ....++||+|+...+
T Consensus 86 ~~~~~~~VrlIDcvG~~v~G 105 (492)
T TIGR02836 86 NEGTKFKVRLVDCVGYTVKG 105 (492)
T ss_pred cCCCcccEEEEECCCcccCC
Confidence 11 234699999998765
No 296
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.76 E-value=0.00016 Score=81.11 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=63.4
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh----hhHHHHHHHhCCCCEEEEEEcccCCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG----SFLARIRDLAGANPIILVVTKVDLLP 222 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~----s~~~~l~~~~~~~pvIlVlNKiDLl~ 222 (553)
+..++||+|. +.|..........+|++++|+|+.+... ..+..+.. .+.|+++|+||+|+.+
T Consensus 70 ~l~~iDTpG~------------e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 70 GLLFIDTPGH------------EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIP 135 (590)
T ss_pred cEEEEECCCc------------HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccc
Confidence 3679999874 3344333444568999999999986321 11222221 3689999999999975
Q ss_pred CCCC-------------hhhHHH-H---H---HHHHhhccc------------CceeEEEeccCCccChhhhHHHHH
Q 008807 223 KGTD-------------FNCVGD-W---V---VEATTKKKL------------NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 223 ~~~~-------------~~~~~~-~---~---~~~~~~~~l------------~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
.... ...+.. + + ...+...++ +...++.+||++|.|+++|++.|.
T Consensus 136 ~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~ 212 (590)
T TIGR00491 136 GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLA 212 (590)
T ss_pred hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHH
Confidence 2110 000000 0 0 001111111 124689999999999999988764
No 297
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=8.1e-05 Score=78.97 Aligned_cols=108 Identities=18% Similarity=0.084 Sum_probs=70.3
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHhCCCCEEEEEEcccCCCCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLAGANPIILVVTKVDLLPKG 224 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~~~~pvIlVlNKiDLl~~~ 224 (553)
...++||+|.|.|.-+ .+.++....-.|+|||++.-- .++..-+..+-.+..+|-|+||+||-..+
T Consensus 77 ~lnlIDTPGHVDFsYE------------VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 77 VLNLIDTPGHVDFSYE------------VSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAAD 144 (603)
T ss_pred EEEEcCCCCccceEEE------------ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCC
Confidence 3568999998866532 122233445568899998642 23333334443567899999999986554
Q ss_pred CChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 225 TDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
.+++++-+.+ --++...+++.+|||+|.|+++++++|.+..+
T Consensus 145 --pervk~eIe~---~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 145 --PERVKQEIED---IIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred --HHHHHHHHHH---HhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 3333332211 13455567899999999999999999977543
No 298
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.76 E-value=2.2e-05 Score=79.53 Aligned_cols=58 Identities=33% Similarity=0.403 Sum_probs=42.9
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeec-EEEEeecC--CcEEEEcCCccCCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGP-IQIDAFLG--GGKLYDTPGVHLHH 345 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~-i~i~~~~~--~~~liDTPGi~~~~ 345 (553)
++-+||.||+|||||+|+|... ++.+.+++-||+.+ +-...+++ ...+.|-|||....
T Consensus 198 dvGLVG~PNAGKSTLL~als~A--------------KpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA 258 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRA--------------KPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA 258 (366)
T ss_pred ccceecCCCCcHHHHHHHhhcc--------------CCcccccceeeeccccceeeccccceeEeccCccccccc
Confidence 7899999999999999999864 55688899999863 11111111 24699999998653
No 299
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.75 E-value=4.3e-05 Score=68.78 Aligned_cols=55 Identities=44% Similarity=0.602 Sum_probs=38.4
Q ss_pred EeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee---cCCcEEEEcCCccCC
Q 008807 277 ILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF---LGGGKLYDTPGVHLH 344 (553)
Q Consensus 277 ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~---~~~~~liDTPGi~~~ 344 (553)
++|.+|+|||||+|+|.+.... ..+..+++|.+....... .....++||||+...
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~ 58 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA-------------IVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEA 58 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc-------------ccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcc
Confidence 5899999999999999875322 144567777765444332 224579999998654
No 300
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.74 E-value=0.00057 Score=68.17 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=51.0
Q ss_pred eEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEE
Q 008807 136 VLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIIL 213 (553)
Q Consensus 136 ~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIl 213 (553)
.....+.+.++...++||+|.. .|......++..+|.+++|+|+.+........+...+ .+.|+++
T Consensus 54 ~~~~~~~~~~~~i~liDTPG~~------------~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~ii 121 (237)
T cd04168 54 SAVASFQWEDTKVNLIDTPGHM------------DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTII 121 (237)
T ss_pred eeeEEEEECCEEEEEEeCCCcc------------chHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE
Confidence 3445666667788899998753 2333344556788999999999875433223332222 3689999
Q ss_pred EEEcccCCCC
Q 008807 214 VVTKVDLLPK 223 (553)
Q Consensus 214 VlNKiDLl~~ 223 (553)
|+||+|+...
T Consensus 122 vvNK~D~~~a 131 (237)
T cd04168 122 FVNKIDRAGA 131 (237)
T ss_pred EEECccccCC
Confidence 9999998754
No 301
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00013 Score=65.94 Aligned_cols=103 Identities=21% Similarity=0.225 Sum_probs=72.9
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccC-----CCChhhHHHHHHHhCCC-CEEEEEEcccC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIV-----DFNGSFLARIRDLAGAN-PIILVVTKVDL 220 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~-----d~~~s~~~~l~~~~~~~-pvIlVlNKiDL 220 (553)
...+.||+| .+.|++........|+.+++|.|++ |....|+.++...+.++ -.|+|.||+|+
T Consensus 57 klqiwdtag------------qerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~ 124 (213)
T KOG0095|consen 57 KLQIWDTAG------------QERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL 124 (213)
T ss_pred EEEEeeccc------------hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccch
Confidence 446889976 5889998888888999999999987 33367777777776543 24899999999
Q ss_pred CCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHH
Q 008807 221 LPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
.+..+....+.+-+.+... .-...+||+...+++.|+..+.
T Consensus 125 ~drrevp~qigeefs~~qd------myfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 125 ADRREVPQQIGEEFSEAQD------MYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hhhhhhhHHHHHHHHHhhh------hhhhhhcccchhhHHHHHHHHH
Confidence 8765444444433222110 1134679999999999887765
No 302
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.72 E-value=4.8e-05 Score=73.53 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=36.8
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-ecCCcEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-FLGGGKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~~~~~~liDTPGi~~~ 344 (553)
+++++|.+|||||||||+|++...... +...+. ...||.....+.. ...+..++||||+...
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~--------~~~~~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEE--------GAAPTG-VVETTMKRTPYPHPKFPNVTLWDLPGIGST 65 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCC--------CccccC-ccccccCceeeecCCCCCceEEeCCCCCcc
Confidence 689999999999999999997422110 001111 1224543222221 0135679999998643
No 303
>PRK12739 elongation factor G; Reviewed
Probab=97.72 E-value=0.00045 Score=79.38 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=74.7
Q ss_pred cccccccCCCcccccCccccccCC-----CCCcccCCch----hh-HhhhccCccceEEEEEEecCCccEEEecCCCCCc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSES-----DAPGYVDPDT----YE-LKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGY 159 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~-----~~~GY~~~~~----f~-t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf 159 (553)
+.+.+.+++-..+|+++++...-. ...|=+..+. +. ..+..+-+.+.....+.+.+++..++||+|..
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~-- 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV-- 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH--
Confidence 455788889999999887765421 1111111110 00 00122233455556676777888999998742
Q ss_pred cCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCC
Q 008807 160 AGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKG 224 (553)
Q Consensus 160 ~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~ 224 (553)
.|......++..+|++|+|||+.+........+...+ .++|+|+++||+|+...+
T Consensus 85 ----------~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 85 ----------DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred ----------HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 2333455667789999999999875433222322222 368999999999998643
No 304
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.72 E-value=3.8e-05 Score=86.39 Aligned_cols=52 Identities=29% Similarity=0.346 Sum_probs=37.8
Q ss_pred ccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccCC
Q 008807 279 GSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 279 G~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~~ 344 (553)
|.||||||||+|+|.+. ...++++||+|.+........+ ...++||||....
T Consensus 1 G~pNvGKSSL~N~Ltg~--------------~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGA--------------NQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCC--------------CCeecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence 88999999999999864 1236789999997544332222 2469999998643
No 305
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.71 E-value=8.8e-05 Score=65.85 Aligned_cols=97 Identities=22% Similarity=0.241 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCC---CC--hhhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVD---FN--GSFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d---~~--~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
.+.|++.......++|.++++.|+.+ |+ ..++.++.+.. ....+.++.||+|+.++......-.+.+.+ ..
T Consensus 57 qerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~---~y 133 (192)
T KOG0083|consen 57 QERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAE---AY 133 (192)
T ss_pred hHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHH---HH
Confidence 57899888888899999999999875 22 34555555543 245678999999998753221111122211 12
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
+ .+...+||++|.+++--+-.|.+.+
T Consensus 134 ~---ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 134 G---IPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred C---CCceeccccccccHhHHHHHHHHHH
Confidence 2 3457789999999987655555543
No 306
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.71 E-value=0.00046 Score=76.59 Aligned_cols=123 Identities=11% Similarity=0.008 Sum_probs=70.9
Q ss_pred cccccccCCCcccccCccccccC-----CCCCcccC---Cch-----hhHh-hhccCccceEEEEEEecCCccEEEecCC
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSE-----SDAPGYVD---PDT-----YELK-KKHHQFKTVLCGRCRLLSHGHMITAVGG 155 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d-----~~~~GY~~---~~~-----f~t~-~~~~~~rd~ic~Rc~~l~~~~~~~dTaG 155 (553)
+++.+.+++-..+|+.++....- -...|=+. .+. |... ++.+..-....-.+...++...++||+|
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 44578888999999998876541 11122221 111 1111 0111000112234555566788999987
Q ss_pred CCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCC
Q 008807 156 NGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKG 224 (553)
Q Consensus 156 ~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~ 224 (553)
.. .|.......+..+|.+|+|+|+.+........+...+ .+.|+++++||+|+...+
T Consensus 89 ~~------------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 89 HE------------DFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred ch------------hhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccC
Confidence 42 3333344556789999999999875433333333332 468999999999986543
No 307
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.70 E-value=5e-05 Score=70.81 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.3
Q ss_pred eEEeccCCCChhHHHHHHHhhh
Q 008807 275 VYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 275 v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
|+|+|..++|||||||+|++..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ 22 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRP 22 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS
T ss_pred CEEEcCCCCCHHHHHHHHHhcc
Confidence 6899999999999999999874
No 308
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.70 E-value=0.00024 Score=83.80 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=63.2
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-h---hhHHHHHHHhCCCCEEEEEEcccCCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-G---SFLARIRDLAGANPIILVVTKVDLLP 222 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-~---s~~~~l~~~~~~~pvIlVlNKiDLl~ 222 (553)
...++||+|. ++|..........+|++++|+|+.+.. . ..+..+.. .+.|+++|+||+|+.+
T Consensus 527 ~i~fiDTPGh------------e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 527 GLLFIDTPGH------------EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIP 592 (1049)
T ss_pred cEEEEECCCc------------HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCcc
Confidence 3689999873 334333333445789999999998632 1 12222222 3679999999999975
Q ss_pred CCCC-h------------hh-HHHH------HHHHHhhcc------------cCceeEEEeccCCccChhhhHHHHH
Q 008807 223 KGTD-F------------NC-VGDW------VVEATTKKK------------LNVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 223 ~~~~-~------------~~-~~~~------~~~~~~~~~------------l~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
.... . .. ..+. +...+...+ .+...++.+||++|.|+++|++.|.
T Consensus 593 ~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~ 669 (1049)
T PRK14845 593 GWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA 669 (1049)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 3210 0 00 0110 000011111 1234689999999999999987764
No 309
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.70 E-value=6.7e-05 Score=76.57 Aligned_cols=23 Identities=35% Similarity=0.777 Sum_probs=21.2
Q ss_pred ceEEeccCCCChhHHHHHHHhhh
Q 008807 274 DVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
+++++|.+|+|||||||+|++..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~ 28 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTK 28 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Confidence 78999999999999999998764
No 310
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.69 E-value=0.00033 Score=76.32 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=65.2
Q ss_pred ceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC--------hhhHHHHH--H
Q 008807 135 TVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN--------GSFLARIR--D 204 (553)
Q Consensus 135 d~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~--------~s~~~~l~--~ 204 (553)
+.....+...++...++||+|. +.|...+...+..+|.+++|||+.+.. ....+.+. .
T Consensus 74 d~~~~~~~~~~~~i~lIDtPGh------------~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~ 141 (446)
T PTZ00141 74 DIALWKFETPKYYFTIIDAPGH------------RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF 141 (446)
T ss_pred EeeeEEEccCCeEEEEEECCCh------------HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH
Confidence 3333344455556789999873 345555555567899999999998632 12222221 2
Q ss_pred HhCCCCEEEEEEcccCCC--CC-CChhhHHHHHHHHHhhcccC--ceeEEEeccCCccChhh
Q 008807 205 LAGANPIILVVTKVDLLP--KG-TDFNCVGDWVVEATTKKKLN--VLSVHLTSSKSLAGIVG 261 (553)
Q Consensus 205 ~~~~~pvIlVlNKiDLl~--~~-~~~~~~~~~~~~~~~~~~l~--~~~vi~iSAk~g~gi~~ 261 (553)
.++-..+|+++||+|... .. .....+.+-+.+.+...++. ...++++||.+|.|+.+
T Consensus 142 ~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 142 TLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 223344679999999532 11 11222222232222222332 24689999999999864
No 311
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.69 E-value=1.6e-05 Score=81.33 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=21.5
Q ss_pred ceEEeccCCCChhHHHHHHHhhhC
Q 008807 274 DVYILGSANVGKSAFINALLKKMG 297 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~ 297 (553)
+++++|.+|+|||||||+|++...
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~ 29 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDI 29 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS-
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 799999999999999999998643
No 312
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.68 E-value=0.0002 Score=67.21 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=93.4
Q ss_pred cccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCc--cEEEecCCCCCccCCCcc
Q 008807 88 KDKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHG--HMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 88 ~~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~--~~~~dTaG~vgf~~~~~~ 165 (553)
++.-.+|.+.+-.=.|+.++|. =|++ .+|....++-.--|-+.+-....++. ..+.||||
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn-------~yv~-~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG---------- 67 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMN-------QYVN-KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG---------- 67 (210)
T ss_pred cccceEEEEeCCCCccHHHHHH-------HHHH-HHHHHHhccccchhheeeEEEEcCeEEEEEEEeccc----------
Confidence 3445567777755555555552 2333 33443322211124444544444332 35789987
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC-----CCCEEEEEEcccCCCC---CCChhhHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG-----ANPIILVVTKVDLLPK---GTDFNCVGD 232 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~-----~~pvIlVlNKiDLl~~---~~~~~~~~~ 232 (553)
.+.|++.-......||..++|.|+.++. ..+.+++...+. .-|.|++.||+|+-.. .....+.+.
T Consensus 68 --QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~ 145 (210)
T KOG0394|consen 68 --QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQT 145 (210)
T ss_pred --HHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHH
Confidence 4555544334457899999998877643 455566555443 3589999999998652 233456677
Q ss_pred HHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 233 WVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 233 ~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
|... + +.+..+.+|||...++++.++.+.+
T Consensus 146 WC~s-----~-gnipyfEtSAK~~~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 146 WCKS-----K-GNIPYFETSAKEATNVDEAFEEIAR 175 (210)
T ss_pred HHHh-----c-CCceeEEecccccccHHHHHHHHHH
Confidence 8632 2 2256789999999999988777654
No 313
>PRK00007 elongation factor G; Reviewed
Probab=97.67 E-value=0.00054 Score=78.76 Aligned_cols=124 Identities=15% Similarity=0.056 Sum_probs=74.8
Q ss_pred ccccccccCCCcccccCccccccCC-----CCCcccCCch----h-hHhhhccCccceEEEEEEecCCccEEEecCCCCC
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSES-----DAPGYVDPDT----Y-ELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGG 158 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~-----~~~GY~~~~~----f-~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vg 158 (553)
.+++.+.+++-..+||+++....-- ...|=+..+. + ...+..+-..+.....+.+.++...++||+|..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~- 86 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV- 86 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH-
Confidence 3456788899999999887764421 1112111110 0 001122334455566777778889999998852
Q ss_pred ccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCC
Q 008807 159 YAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKG 224 (553)
Q Consensus 159 f~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~ 224 (553)
.|......++..+|++|+|||+.+........+...+ .+.|+|+++||+|+...+
T Consensus 87 -----------~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 87 -----------DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred -----------HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 1222345556788999999998764322222222222 468999999999998644
No 314
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.67 E-value=5.9e-05 Score=70.79 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.5
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC
Confidence 457999999999999999999865
No 315
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00018 Score=77.74 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=63.5
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-hhhHHHHHHH-hCCCCEEEEEEcccCCCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-GSFLARIRDL-AGANPIILVVTKVDLLPK 223 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-~s~~~~l~~~-~~~~pvIlVlNKiDLl~~ 223 (553)
....|+||||. ++|-.+=..=..-+|++++|||+-|-- ..-.+.+... ..+.|+++.+||+|..+.
T Consensus 55 ~~itFiDTPGH------------eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 55 PGITFIDTPGH------------EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA 122 (509)
T ss_pred ceEEEEcCCcH------------HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC
Confidence 35678899763 344332222234579999999998742 2222222211 247899999999999754
Q ss_pred CCChhhHHHHHHHHHhhccc------CceeEEEeccCCccChhhhHHHHH
Q 008807 224 GTDFNCVGDWVVEATTKKKL------NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l------~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
+ ...+..- +...++ +...++.+||++|.|+++|++.|.
T Consensus 123 n--p~~v~~e----l~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 123 N--PDKVKQE----LQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred C--HHHHHHH----HHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 3 2222211 111222 224578999999999999987764
No 316
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.66 E-value=3e-05 Score=77.33 Aligned_cols=58 Identities=33% Similarity=0.369 Sum_probs=37.8
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCC----ceeecEEEEeecCCcEEEEcCCccC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPG----TTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PG----TT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
+..++.++|.+|+|||||||+|++..... ++..+- +|+....++ .++..|.||||+-.
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~-------------v~~vg~~t~~~~~~~~~~~--~~~l~lwDtPG~gd 99 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKE-------------VSKVGVGTDITTRLRLSYD--GENLVLWDTPGLGD 99 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCce-------------eeecccCCCchhhHHhhcc--ccceEEecCCCccc
Confidence 34578899999999999999999643221 222232 233222222 24567999999975
No 317
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00027 Score=63.91 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=69.9
Q ss_pred eEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--------C
Q 008807 136 VLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--------G 207 (553)
Q Consensus 136 ~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--------~ 207 (553)
++.+-|.. ...++.||+|. |.++.........|+-+|++.|+++.+ + ...+.+++ .
T Consensus 62 Tvyr~~kR--iklQiwDTagq------------EryrtiTTayyRgamgfiLmyDitNee-S-f~svqdw~tqIktysw~ 125 (193)
T KOG0093|consen 62 TVYRSDKR--IKLQIWDTAGQ------------ERYRTITTAYYRGAMGFILMYDITNEE-S-FNSVQDWITQIKTYSWD 125 (193)
T ss_pred EeeecccE--EEEEEEecccc------------hhhhHHHHHHhhccceEEEEEecCCHH-H-HHHHHHHHHHheeeecc
Confidence 34444433 33568899763 445555555567899999999998632 1 12222221 4
Q ss_pred CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 208 ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 208 ~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
+.|+|+|.||||+-++......-..-+ ...++ .+.+..|||.+.+++++.+++..
T Consensus 126 naqvilvgnKCDmd~eRvis~e~g~~l-----~~~LG-fefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 126 NAQVILVGNKCDMDSERVISHERGRQL-----ADQLG-FEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred CceEEEEecccCCccceeeeHHHHHHH-----HHHhC-hHHhhhcccccccHHHHHHHHHH
Confidence 689999999999976543221111111 12344 35688999999999998887754
No 318
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.66 E-value=4.5e-05 Score=71.05 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|.+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~ 24 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN 24 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6999999999999999998864
No 319
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00023 Score=73.10 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=74.8
Q ss_pred hccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh---hhHHHHHHH
Q 008807 129 KHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG---SFLARIRDL 205 (553)
Q Consensus 129 ~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~---s~~~~l~~~ 205 (553)
+++.+=|+-.+...-.+..+++.||+|- +++-+.+..-..-+|+.|.+||++.--. .....+..+
T Consensus 69 EQGITIDVAYRyFsT~KRkFIiADTPGH------------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sL 136 (431)
T COG2895 69 EQGITIDVAYRYFSTEKRKFIIADTPGH------------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASL 136 (431)
T ss_pred hcCceEEEEeeecccccceEEEecCCcH------------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHH
Confidence 3344457777777777888999999874 3332222222347899999999985321 111223445
Q ss_pred hCCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcccCceeEEEeccCCccChh
Q 008807 206 AGANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIV 260 (553)
Q Consensus 206 ~~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~ 260 (553)
++-+.+++.+||+||++-++. .+.+..-+......-++.....+++||..|.|+-
T Consensus 137 LGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 137 LGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred hCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 577889999999999976532 2223222222222333444568899999998874
No 320
>PRK10218 GTP-binding protein; Provisional
Probab=97.65 E-value=0.00051 Score=77.32 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=87.3
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCch------hhHhhhccCcc--ceEEE--EEEecCCccEEEecCCCCCcc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDT------YELKKKHHQFK--TVLCG--RCRLLSHGHMITAVGGNGGYA 160 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~------f~t~~~~~~~r--d~ic~--Rc~~l~~~~~~~dTaG~vgf~ 160 (553)
.+.+.+++-.-+|+.+++...-.. .|-+.... .+.. .....+ ...+. .+...++...++||+|..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~-~g~~~~~~~~~~~v~D~~-~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~--- 79 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQ-SGTFDSRAETQERVMDSN-DLEKERGITILAKNTAIKWNDYRINIVDTPGHA--- 79 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHh-cCCcccccccceeeeccc-cccccCceEEEEEEEEEecCCEEEEEEECCCcc---
Confidence 446677777778888777655431 22221110 0000 000111 11122 233445567899998753
Q ss_pred CCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHH--hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHH
Q 008807 161 GGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDL--AGANPIILVVTKVDLLPKGTDFNCVGDWVVEAT 238 (553)
Q Consensus 161 ~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~--~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~ 238 (553)
.|......++..+|.+|+|+|+.+-.......+... ..+.|.++|+||+|+..... ...+.+ +.+.+
T Consensus 80 ---------df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~-~~vl~e-i~~l~ 148 (607)
T PRK10218 80 ---------DFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARP-DWVVDQ-VFDLF 148 (607)
T ss_pred ---------hhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCch-hHHHHH-HHHHH
Confidence 233334555678999999999987432211111111 14678999999999864321 111111 11111
Q ss_pred hh-----cccCceeEEEeccCCcc----------ChhhhHHHHHHhh
Q 008807 239 TK-----KKLNVLSVHLTSSKSLA----------GIVGVASEIQKEK 270 (553)
Q Consensus 239 ~~-----~~l~~~~vi~iSAk~g~----------gi~~Ll~~L~~~~ 270 (553)
.. .... ..++++||++|+ |+..|++.|.+..
T Consensus 149 ~~l~~~~~~~~-~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 149 VNLDATDEQLD-FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred hccCccccccC-CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 11 1112 358999999998 5777777776654
No 321
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.64 E-value=0.00018 Score=70.31 Aligned_cols=64 Identities=27% Similarity=0.270 Sum_probs=41.9
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLL 221 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl 221 (553)
+...++||+|.. .|.......+..+|.+++|+|+.+........+...+ ...|+++|+||+|++
T Consensus 71 ~~i~iiDtpG~~------------~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 71 YLFNIIDTPGHV------------NFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEECCCCc------------chHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 345789998853 2223344456689999999999865433222221111 358999999999986
No 322
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.63 E-value=5.7e-05 Score=81.79 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=43.7
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChh-----h-hhhhhcCC-----------ccCCCCCceeecEEEEeecCC--
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPA-----A-AMAQKYRP-----------IQSAVPGTTLGPIQIDAFLGG-- 332 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~-----~-~~~~~~~~-----------~~S~~PGTT~~~i~i~~~~~~-- 332 (553)
..+++++|.+|+|||||+|+|+.....-... . +..+.++. .....+|+|++.....+..++
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~ 85 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYY 85 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeE
Confidence 4579999999999999999999764332110 0 00000111 011268999987665543333
Q ss_pred cEEEEcCCcc
Q 008807 333 GKLYDTPGVH 342 (553)
Q Consensus 333 ~~liDTPGi~ 342 (553)
..++||||..
T Consensus 86 i~liDtpG~~ 95 (425)
T PRK12317 86 FTIVDCPGHR 95 (425)
T ss_pred EEEEECCCcc
Confidence 3599999964
No 323
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.63 E-value=0.00011 Score=67.82 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|++++.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC
Confidence 37899999999999999999864
No 324
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.63 E-value=9.5e-05 Score=70.97 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++++++|.+|||||||+|+|+..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~ 25 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQ 25 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHH
Confidence 47999999999999999999974
No 325
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.62 E-value=7.1e-05 Score=74.02 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=40.0
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeec------CCcEEEEcCCccCCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFL------GGGKLYDTPGVHLHH 345 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~------~~~~liDTPGi~~~~ 345 (553)
.|.|+|.+++|||||+|.|++... .-.+.+..+.||++. .+-... ....++||||+...+
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~-----------~f~~~~~~~~~T~gi-~~~~~~~~~~~~~~v~~lDteG~~~~~ 74 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLS-----------GFDVMDTSQQTTKGI-WMWSVPFKLGKEHAVLLLDTEGTDGRE 74 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----------CeEecCCCCCCccce-EEEeccccCCCcceEEEEecCCcCccc
Confidence 689999999999999999998620 011223346688863 332211 234699999997654
No 326
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.62 E-value=9.1e-05 Score=68.63 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=19.8
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 4789999999999999999864
No 327
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.62 E-value=0.00031 Score=75.29 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=36.6
Q ss_pred CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhh-hHHHHHHhhcc
Q 008807 208 ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVG-VASEIQKEKKG 272 (553)
Q Consensus 208 ~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~-Ll~~L~~~~~g 272 (553)
.+|+|+|+||+|+..... .+.+. ... +...++.+||+.+.++++ |.+.+.++++.
T Consensus 217 ~KPvI~VlNK~D~~~~~~---~l~~i-----~~~--~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE---NIERL-----KEE--KYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred CCCEEEEEEchhcccchH---HHHHH-----Hhc--CCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 489999999999763321 12221 111 346689999999999988 66666665543
No 328
>PRK13351 elongation factor G; Reviewed
Probab=97.62 E-value=0.00058 Score=78.50 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=70.6
Q ss_pred cccccccCCCcccccCccccccCCCCCccc------CCch----hhHh-hhccCccceEEEEEEecCCccEEEecCCCCC
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYV------DPDT----YELK-KKHHQFKTVLCGRCRLLSHGHMITAVGGNGG 158 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~------~~~~----f~t~-~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vg 158 (553)
+.+.+..+|...+|+.+++...-.. .|.+ ..+. |... +.....-......+.+.++...++||+|..
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~-~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~- 84 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFY-TGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI- 84 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHh-cCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH-
Confidence 3457788888999998888654321 1111 1111 1000 011111122223455566778899998752
Q ss_pred ccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCC
Q 008807 159 YAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPK 223 (553)
Q Consensus 159 f~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~ 223 (553)
.|......++..+|.+++|+|+.+........+...+ .+.|+++|+||+|+...
T Consensus 85 -----------df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 -----------DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred -----------HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCC
Confidence 3444556667789999999999875432222222211 36899999999998754
No 329
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.61 E-value=0.0001 Score=68.84 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=36.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCcc
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVH 342 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~ 342 (553)
+..+++++|.+|||||||+|+|.+.... ...+..|.+...+... .....++||||..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-------------~~~~t~g~~~~~i~~~--~~~~~~~D~~G~~ 69 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-------------HITPTQGFNIKTVQSD--GFKLNVWDIGGQR 69 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-------------ccCCCCCcceEEEEEC--CEEEEEEECCCCH
Confidence 3458999999999999999999864210 1223345444333322 1234589999963
No 330
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.61 E-value=0.00011 Score=71.20 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=39.9
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhh--hhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAM--AQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~--~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~ 342 (553)
.++.++|.+|+|||||+++|+............ .--.....-...|+|.+...+..-.++ ..++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 478999999999999999999752110000000 000000011246888876544432222 3599999974
No 331
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.60 E-value=0.00011 Score=74.77 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=39.9
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCcc------CCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQ------SAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~------S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
+++++|.+|+|||||+|+|+............. ...++ ....|+|.+.....+...+ ..++||||...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~--~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVH--GGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCccccccc--CCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence 478999999999999999986533211100000 00111 1245788764444333333 35899999753
No 332
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.60 E-value=0.00013 Score=67.59 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=20.4
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|.+.
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 333
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.60 E-value=7.4e-05 Score=70.35 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.2
Q ss_pred ceEEeccCCCChhHHHHHHHhhhC
Q 008807 274 DVYILGSANVGKSAFINALLKKMG 297 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~ 297 (553)
+++++|.+|+|||||+|+|.+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999998643
No 334
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.59 E-value=6.5e-05 Score=71.99 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~ 23 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEI 23 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 335
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.58 E-value=0.00056 Score=74.55 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=60.6
Q ss_pred cCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCC--C------hhhHHHHH--HHhCCCCEEE
Q 008807 144 LSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDF--N------GSFLARIR--DLAGANPIIL 213 (553)
Q Consensus 144 l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~--~------~s~~~~l~--~~~~~~pvIl 213 (553)
.++...++||+|. ++|...+...+..+|..|+|||+.+- . ....+.+. ...+-.++|+
T Consensus 83 ~~~~i~liDtPGh------------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV 150 (447)
T PLN00043 83 TKYYCTVIDAPGH------------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMIC 150 (447)
T ss_pred CCEEEEEEECCCH------------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEE
Confidence 3445678999873 44554455556689999999999862 1 12222221 1123345788
Q ss_pred EEEcccCCCCCCC---hhhHHHHHHHHHhhcccC--ceeEEEeccCCccChhh
Q 008807 214 VVTKVDLLPKGTD---FNCVGDWVVEATTKKKLN--VLSVHLTSSKSLAGIVG 261 (553)
Q Consensus 214 VlNKiDLl~~~~~---~~~~~~~~~~~~~~~~l~--~~~vi~iSAk~g~gi~~ 261 (553)
++||+|+.+.... .+.+.+-+...+...++. -..++++||.+|.|+.+
T Consensus 151 ~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 151 CCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 9999998632211 111222222222222322 14578999999999854
No 336
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.58 E-value=9.2e-05 Score=67.14 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.5
Q ss_pred eEEeccCCCChhHHHHHHHhh
Q 008807 275 VYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 275 v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+.++|.+|||||||+|+|.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999875
No 337
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.58 E-value=0.00014 Score=66.61 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999964
No 338
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.57 E-value=0.00038 Score=78.21 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=84.3
Q ss_pred ccccccccCCCcccccCccccccCCCC------CcccCC-chhhHhhhccCccceE---EEE------EEecCCccEEEe
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA------PGYVDP-DTYELKKKHHQFKTVL---CGR------CRLLSHGHMITA 152 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~------~GY~~~-~~f~t~~~~~~~rd~i---c~R------c~~l~~~~~~~d 152 (553)
.|...+...|..+.|+.++|....... .|++.. +.+... .+.. +.. +........++|
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~iD 77 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVP------IDVIEKIAGPLKKPLPIKLKIPGLLFID 77 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeecc------ccccccccceeccccccccccCCEEEEE
Confidence 355578888999999999987764221 112110 000000 0000 000 000011357899
Q ss_pred cCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC--h--hhHHHHHHHhCCCCEEEEEEcccCCCCCCC--
Q 008807 153 VGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN--G--SFLARIRDLAGANPIILVVTKVDLLPKGTD-- 226 (553)
Q Consensus 153 TaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~--~--s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~-- 226 (553)
|||. +.|..........+|++++|+|+.+-. . ..+..+.. .+.|+++|+||+|+.+....
T Consensus 78 TPG~------------e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~ 143 (586)
T PRK04004 78 TPGH------------EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTE 143 (586)
T ss_pred CCCh------------HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhc
Confidence 9874 234333334456799999999998621 1 11222221 46899999999998642110
Q ss_pred -----------hhhHHHH-------HHHHHhhccc------------CceeEEEeccCCccChhhhHHHHH
Q 008807 227 -----------FNCVGDW-------VVEATTKKKL------------NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 227 -----------~~~~~~~-------~~~~~~~~~l------------~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
...+.+- +...+...++ +...++.+||++|.|+++|++.+.
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 0000000 0011111111 224589999999999999887664
No 339
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.56 E-value=0.0002 Score=70.74 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=43.1
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLL 221 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl 221 (553)
+...++||+|.. .|......++..+|.+++|+|+.+........+...+ .+.|+++|+||+|+.
T Consensus 73 ~~i~iiDTPG~~------------~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 73 YLINLIDSPGHV------------DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred eEEEEECCCCcc------------ccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 346789998853 2334455566789999999999875432222222221 357999999999986
No 340
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.56 E-value=6.3e-05 Score=79.24 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=37.2
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee-cCCcEEEEcCCccCCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF-LGGGKLYDTPGVHLHH 345 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~-~~~~~liDTPGi~~~~ 345 (553)
..+++|+|.+|+|||||||+|++-..... +.+.++. ..||........- ..+..+.|.||+..++
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~--------~aA~tGv-~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~ 100 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDE--------GAAPTGV-VETTMEPTPYPHPKFPNVTLWDLPGIGTPN 100 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTST--------TS--SSS-HSCCTS-EEEE-SS-TTEEEEEE--GGGSS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCc--------CcCCCCC-CcCCCCCeeCCCCCCCCCeEEeCCCCCCCC
Confidence 35899999999999999999997422211 1111211 2366655444321 2467899999996553
No 341
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.56 E-value=0.00012 Score=66.32 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 342
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.55 E-value=0.00013 Score=67.21 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=35.3
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCcc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVH 342 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~ 342 (553)
+++++|.+|||||||+|+|...... ....+.+|++.....+..... ...++||||..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFD------------PDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC------------cccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 5899999999999999999864211 112344555443333322111 23588999953
No 343
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.53 E-value=0.00016 Score=66.35 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999964
No 344
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.53 E-value=0.00053 Score=78.85 Aligned_cols=123 Identities=15% Similarity=0.023 Sum_probs=75.1
Q ss_pred cccccccCCCcccccCccccccCC-----CCCcccCCchh-----hHhhhccCccceEEEEEEecCCccEEEecCCCCCc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSES-----DAPGYVDPDTY-----ELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGY 159 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~-----~~~GY~~~~~f-----~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf 159 (553)
+.+.+.+++-..+||++++...-. ...|-+.++.. ...+..+.+.+.....+.+.+++..++||+|...|
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 455788899999999988875521 12232222110 00112223334555666677788899999986422
Q ss_pred cCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCC
Q 008807 160 AGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKG 224 (553)
Q Consensus 160 ~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~ 224 (553)
......++..+|++++|+|+.+........+...+ .+.|+++|+||+|+...+
T Consensus 89 ------------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 89 ------------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred ------------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 12244556688999999999874332222222221 368999999999997543
No 345
>PTZ00258 GTP-binding protein; Provisional
Probab=97.53 E-value=0.0006 Score=72.60 Aligned_cols=91 Identities=13% Similarity=0.018 Sum_probs=57.4
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec-----------------CCccEEE
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL-----------------SHGHMIT 151 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-----------------~~~~~~~ 151 (553)
....++.++|..++|++++|+...... --+.+-.|.|. ++..+.|... ..+..++
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi-------~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lv 90 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTI-------DPNTARVNVPDERFDWLCKHFKPKSIVPAQLDIT 90 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcc-------cceEEEEecccchhhHHHHHcCCcccCCCCeEEE
Confidence 444588999999999999999885532 23333345554 4555555443 2247899
Q ss_pred ecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccC
Q 008807 152 AVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIV 192 (553)
Q Consensus 152 dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~ 192 (553)
||||++ ... +. .+.+..+....++++|+|+||||++
T Consensus 91 DtpGLv---~ga-~~-g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 91 DIAGLV---KGA-SE-GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ECCCcC---cCC-cc-hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 999875 111 11 2233333334467899999999985
No 346
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.52 E-value=0.00013 Score=67.00 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=35.3
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
+++++|.+|||||||+|++.+.... ...+..|.+...+.+. .....++||||...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-------------~~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-------------TTIPTIGFNVETVEYK--NVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-------------CCCCCcCcceEEEEEC--CEEEEEEECCCChh
Confidence 4789999999999999999976311 1122234444333322 22456999999643
No 347
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.52 E-value=7.8e-05 Score=67.37 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999864
No 348
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.52 E-value=0.00014 Score=67.87 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 349
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.51 E-value=0.00015 Score=66.87 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=20.5
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999975
No 350
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.51 E-value=0.00018 Score=66.56 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.0
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~ 24 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
No 351
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.51 E-value=0.00012 Score=67.25 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.8
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc
Confidence 4789999999999999999864
No 352
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.50 E-value=0.00022 Score=65.70 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.4
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|.+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999975
No 353
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.50 E-value=0.00019 Score=66.29 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 354
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.48 E-value=0.0002 Score=67.47 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.2
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC
Confidence 357999999999999999999854
No 355
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.47 E-value=0.00023 Score=65.94 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 356
>CHL00071 tufA elongation factor Tu
Probab=97.47 E-value=0.00016 Score=78.03 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=42.8
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCCh--hhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCcc
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDP--AAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVH 342 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~--~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~ 342 (553)
+..++.++|.+|+|||||+|+|+........ ....+.-........+|+|++........++ ..++||||..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 3458999999999999999999976322100 0000000011122248999986555432222 3599999953
No 357
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.46 E-value=0.00015 Score=67.41 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.7
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||||+++..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 358
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.45 E-value=0.0002 Score=67.43 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++++++|.+|||||||+|++...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999964
No 359
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.44 E-value=0.00022 Score=67.97 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999864
No 360
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.44 E-value=0.00084 Score=68.06 Aligned_cols=110 Identities=12% Similarity=0.056 Sum_probs=65.8
Q ss_pred EEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEE
Q 008807 139 GRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVT 216 (553)
Q Consensus 139 ~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlN 216 (553)
..+.+.++...++||+|.. .|......++..+|.+++|+|+.+........+...+ .+.|.++|+|
T Consensus 57 ~~~~~~~~~i~liDtPG~~------------~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvN 124 (268)
T cd04170 57 APLEWKGHKINLIDTPGYA------------DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFIN 124 (268)
T ss_pred EEEEECCEEEEEEECcCHH------------HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 4555556677899998742 3444455566789999999999875433322222221 3689999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHhhcccCc-eeEEEeccCCccChhhhHHHHH
Q 008807 217 KVDLLPKGTDFNCVGDWVVEATTKKKLNV-LSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 217 KiDLl~~~~~~~~~~~~~~~~~~~~~l~~-~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
|+|+...+ .....+-+.+ .++. .-.+.+...++.++..+++.+.
T Consensus 125 K~D~~~~~--~~~~~~~l~~-----~~~~~~~~~~ip~~~~~~~~~~vd~~~ 169 (268)
T cd04170 125 KMDRERAD--FDKTLAALQE-----AFGRPVVPLQLPIGEGDDFKGVVDLLT 169 (268)
T ss_pred CCccCCCC--HHHHHHHHHH-----HhCCCeEEEEecccCCCceeEEEEccc
Confidence 99987542 2222122211 1221 1124456777888877766654
No 361
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.44 E-value=0.00029 Score=64.78 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 362
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.43 E-value=8.4e-05 Score=76.95 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=59.2
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC----cEEEEcCCccCC-----
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG----GKLYDTPGVHLH----- 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~----~~liDTPGi~~~----- 344 (553)
+++++|.+|.|||||||+|++.......... ..++ ...-|++....-...+..++ ..+|||||+...
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~l~~~~~~~---~~~~-~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTSLVDETEID---DIRA-EGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred EEEEecCCCCchhHHHHhhhHhhccCCCCcc---Cccc-ccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 8999999999999999999987322210000 0000 00112222211111222222 369999999754
Q ss_pred --CccccccCcCcccccccccccCCc-eeecccccccCccccccccCCcEEEEeeeEeEEe
Q 008807 345 --HRQAAVVHAEDLPALAPQSRLRGQ-SFAVISETETNNEFKSHGLNGFTIFWGGLVRIDL 402 (553)
Q Consensus 345 --~~~~~~l~~~~l~~l~p~~~l~~~-~~~~~~~h~e~~c~~~~~~~g~sl~~GGL~rid~ 402 (553)
.-+.++|+.+--..+.-+.++... .+.....| |..+.+.|... ||-.+|+
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH----~cLYFI~Ptgh----~l~~~DI 153 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVH----ACLYFIRPTGH----GLKPLDI 153 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceE----EEEEEecCCCC----CCCHHHH
Confidence 113333444333344444454433 35555556 55555554221 5655655
No 363
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.43 E-value=0.00022 Score=69.03 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||||++.+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~ 23 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQ 23 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999864
No 364
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.43 E-value=0.00024 Score=67.53 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.9
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..+++++|.+|||||||+|+|.+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999864
No 365
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.43 E-value=0.00018 Score=66.13 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.0
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++.+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 366
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.43 E-value=0.00026 Score=65.08 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 367
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.42 E-value=0.00018 Score=81.91 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.2
Q ss_pred cceEEeccCCCChhHHHHHHHhhhC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMG 297 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~ 297 (553)
.+++++|.+|+|||||+|+|+....
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~ 49 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSK 49 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhC
Confidence 4789999999999999999998643
No 368
>PLN03118 Rab family protein; Provisional
Probab=97.42 E-value=0.00022 Score=69.44 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=35.9
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~~ 343 (553)
.+++|+|.+|||||||+|+|+.... ...++..|++.....+. +.+ ...|+||||...
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~-------------~~~~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSV-------------EDLAPTIGVDFKIKQLT-VGGKRLKLTIWDTAGQER 74 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC-------------CCcCCCceeEEEEEEEE-ECCEEEEEEEEECCCchh
Confidence 4799999999999999999986421 01223334433222232 222 235999999654
No 369
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.42 E-value=0.00022 Score=65.71 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 370
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.41 E-value=6.4e-05 Score=80.17 Aligned_cols=59 Identities=25% Similarity=0.190 Sum_probs=41.0
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe--ecCCcEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA--FLGGGKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~--~~~~~~liDTPGi~~~ 344 (553)
..+..++|.||||||||+|.+... ..-+-++|-||+...--.+ ..-...++|||||..+
T Consensus 168 trTlllcG~PNVGKSSf~~~vtra--------------dvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~ 228 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRA--------------DDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDR 228 (620)
T ss_pred cCeEEEecCCCCCcHhhccccccc--------------ccccCCcccccchhhhhhhhhheeeeeecCCccccCc
Confidence 468999999999999999988753 2335678888885211110 0113459999999754
No 371
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.39 E-value=0.00021 Score=71.35 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=42.3
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
.+.++|.+|||||||||.+....... -+.++.||-|+ .++-.......+++|.||+-.
T Consensus 138 e~~~~g~SNVGKSSLln~~~r~k~~~-----------~t~k~K~g~Tq-~in~f~v~~~~~~vDlPG~~~ 195 (320)
T KOG2486|consen 138 ELAFYGRSNVGKSSLLNDLVRVKNIA-----------DTSKSKNGKTQ-AINHFHVGKSWYEVDLPGYGR 195 (320)
T ss_pred eeeeecCCcccHHHHHhhhhhhhhhh-----------hhcCCCCccce-eeeeeeccceEEEEecCCccc
Confidence 78999999999999999999763321 23445789998 344443445567999999643
No 372
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.39 E-value=0.00032 Score=66.99 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||||++...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~ 23 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHH 23 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 373
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.38 E-value=0.00032 Score=64.55 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 374
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.37 E-value=0.00037 Score=64.70 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=20.4
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 375
>PRK12740 elongation factor G; Reviewed
Probab=97.37 E-value=0.0021 Score=73.79 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=50.1
Q ss_pred EEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEE
Q 008807 137 LCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILV 214 (553)
Q Consensus 137 ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlV 214 (553)
....+.+.++...++||+|.. .|......++..+|.+++|+|+.+........+...+ .+.|+++|
T Consensus 51 ~~~~~~~~~~~i~liDtPG~~------------~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv 118 (668)
T PRK12740 51 AATTCEWKGHKINLIDTPGHV------------DFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIF 118 (668)
T ss_pred ceEEEEECCEEEEEEECCCcH------------HHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEE
Confidence 334566667788999998752 2333445556789999999999875432222222111 36899999
Q ss_pred EEcccCCCC
Q 008807 215 VTKVDLLPK 223 (553)
Q Consensus 215 lNKiDLl~~ 223 (553)
+||+|+...
T Consensus 119 ~NK~D~~~~ 127 (668)
T PRK12740 119 VNKMDRAGA 127 (668)
T ss_pred EECCCCCCC
Confidence 999998754
No 376
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.37 E-value=0.0014 Score=59.49 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=87.0
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
.+..+|..++|+.+...-... -+|..+..- | +-.--+..........+.|.+|- ..|+
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~--g~~~edmip-t-------vGfnmrk~tkgnvtiklwD~gGq------------~rfr 79 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIAR--GQYLEDMIP-T-------VGFNMRKVTKGNVTIKLWDLGGQ------------PRFR 79 (186)
T ss_pred eEEEEeeccCCcceEEEEEee--ccchhhhcc-c-------ccceeEEeccCceEEEEEecCCC------------ccHH
Confidence 567888889999888764432 133322110 0 00111122222223456777663 2456
Q ss_pred HHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccC-
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLN- 244 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~- 244 (553)
..-+..-...++|+++||+.|++. .-..++.+++ .+.|++++.||+|+-..-.....+.+ ..-..+.
T Consensus 80 smWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~r-----mgL~sitd 154 (186)
T KOG0075|consen 80 SMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIER-----MGLSSITD 154 (186)
T ss_pred HHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHH-----hCcccccc
Confidence 666666778999999999999652 1112333332 46899999999998543221111111 1111111
Q ss_pred -ceeEEEeccCCccChhhhHHHHHHh
Q 008807 245 -VLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 245 -~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
-...+.||++...+++.+++.|.++
T Consensus 155 REvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 155 REVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred ceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 1347899999999999998888764
No 377
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.37 E-value=0.00025 Score=64.87 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=63.9
Q ss_pred cEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCC-CCEEEEEEcccCC
Q 008807 148 HMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGA-NPIILVVTKVDLL 221 (553)
Q Consensus 148 ~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~-~pvIlVlNKiDLl 221 (553)
..+.||+|-- .|.+.=-.....++-+++|.|++|-+ .+|..+++.+.++ ..+++|.||+||-
T Consensus 64 L~IWDTAGQE------------rfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 64 LHIWDTAGQE------------RFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred eeeeeccchH------------hhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 3478998743 33222222356889999999999854 3566667766664 5689999999986
Q ss_pred CCCCC-hhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHH
Q 008807 222 PKGTD-FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 222 ~~~~~-~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
.+... ......| .+..+ ...+.+||+.+.||.+|++.|-
T Consensus 132 eeR~Vt~qeAe~Y------AesvG-A~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 132 EERQVTRQEAEAY------AESVG-ALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred HhhhhhHHHHHHH------HHhhc-hhheecccccccCHHHHHHHHH
Confidence 43211 1111122 12222 2346789999999998877664
No 378
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.36 E-value=0.00026 Score=74.56 Aligned_cols=59 Identities=25% Similarity=0.239 Sum_probs=39.8
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEE-EEeecC------------------Cc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQ-IDAFLG------------------GG 333 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~-i~~~~~------------------~~ 333 (553)
.++.+||.||||||||+|+|.+.... .++.+|.||.++.. +....+ ..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~-------------~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i 69 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGN-------------EAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTT 69 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcc-------------ccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceE
Confidence 36889999999999999999865210 24567888776432 111111 23
Q ss_pred EEEEcCCccCC
Q 008807 334 KLYDTPGVHLH 344 (553)
Q Consensus 334 ~liDTPGi~~~ 344 (553)
.++|.||+...
T Consensus 70 ~~~DiaGlv~g 80 (368)
T TIGR00092 70 EFVDIAGLVGG 80 (368)
T ss_pred EEEeccccccc
Confidence 68999999753
No 379
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.36 E-value=0.00022 Score=72.93 Aligned_cols=57 Identities=32% Similarity=0.415 Sum_probs=41.3
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-------------ec------CCcE
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-------------FL------GGGK 334 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-------------~~------~~~~ 334 (553)
.+.|||.||||||||+|+|.+. .+...++|-+|.++.+-.. +. .-..
T Consensus 22 kiGIVGlPNvGKST~fnalT~~--------------~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~ 87 (391)
T KOG1491|consen 22 KIGIVGLPNVGKSTFFNALTKS--------------KAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLT 87 (391)
T ss_pred eeeEeeCCCCchHHHHHHHhcC--------------CCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEE
Confidence 6899999999999999999865 2225678989988643211 00 1236
Q ss_pred EEEcCCccCC
Q 008807 335 LYDTPGVHLH 344 (553)
Q Consensus 335 liDTPGi~~~ 344 (553)
++|..|+...
T Consensus 88 v~DIAGLvkG 97 (391)
T KOG1491|consen 88 VYDIAGLVKG 97 (391)
T ss_pred EEeecccccC
Confidence 9999998754
No 380
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.34 E-value=0.0016 Score=63.38 Aligned_cols=64 Identities=16% Similarity=0.292 Sum_probs=44.0
Q ss_pred cEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh----------------
Q 008807 148 HMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA---------------- 206 (553)
Q Consensus 148 ~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~---------------- 206 (553)
..+.||+|. +.+..........+|.+|+|.|+++.. ..|+..+....
T Consensus 56 l~IwDtaG~------------e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~ 123 (202)
T cd04102 56 VELWDVGGS------------ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSE 123 (202)
T ss_pred EEEEecCCc------------hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 467899763 344544555677899999999999864 23444443321
Q ss_pred ----CCCCEEEEEEcccCCCC
Q 008807 207 ----GANPIILVVTKVDLLPK 223 (553)
Q Consensus 207 ----~~~pvIlVlNKiDLl~~ 223 (553)
...|+|||.||+||.++
T Consensus 124 ~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 124 QFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred ccCCCCceEEEEEECccchhh
Confidence 14699999999999764
No 381
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0016 Score=70.41 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=62.2
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh-hhHHHHHHH-hCCCCEEEEEEcccCCCCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG-SFLARIRDL-AGANPIILVVTKVDLLPKG 224 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-s~~~~l~~~-~~~~pvIlVlNKiDLl~~~ 224 (553)
...|.||+|- ....+|+++ -..-+|+|++||-+-|--. .-.+.|.-. ..+.|+|+.+||||.-.
T Consensus 202 ~iTFLDTPGH---------aAF~aMRaR---GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~-- 267 (683)
T KOG1145|consen 202 SITFLDTPGH---------AAFSAMRAR---GANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPG-- 267 (683)
T ss_pred EEEEecCCcH---------HHHHHHHhc---cCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCC--
Confidence 3467788763 223344433 3346799999998876421 112222211 14789999999999542
Q ss_pred CChhhHHHHHHH-HHhhccc-CceeEEEeccCCccChhhhHHHHH
Q 008807 225 TDFNCVGDWVVE-ATTKKKL-NVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 225 ~~~~~~~~~~~~-~~~~~~l-~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
.+.+++.+-+.. -+.-+.+ +-..++.|||++|.|++.|.+++.
T Consensus 268 a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 268 ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHH
Confidence 234433322211 1111222 235689999999999999887764
No 382
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.34 E-value=0.00046 Score=63.11 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999965
No 383
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.33 E-value=0.00046 Score=64.11 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|.+.
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~ 24 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADD 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 384
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.32 E-value=0.00027 Score=66.29 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++.++|.+|||||||+|+|+..
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~ 23 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLEL 23 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHH
Confidence 47899999999999999999975
No 385
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.32 E-value=0.0013 Score=68.81 Aligned_cols=108 Identities=16% Similarity=0.043 Sum_probs=60.9
Q ss_pred CCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHH-HhCCCCEEEEEEcccCCCC
Q 008807 145 SHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRD-LAGANPIILVVTKVDLLPK 223 (553)
Q Consensus 145 ~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~-~~~~~pvIlVlNKiDLl~~ 223 (553)
+....++||+|.. ..... +...+|++++|++... +.-+..+.. .+ ...-++|+||+|+++.
T Consensus 148 g~d~viieT~Gv~--------qs~~~-------i~~~aD~vlvv~~p~~--gd~iq~~k~gi~-E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 148 GYDVILVETVGVG--------QSETA-------VAGMVDFFLLLQLPGA--GDELQGIKKGIM-ELADLIVINKADGDNK 209 (332)
T ss_pred CCCEEEEECCCCc--------cchhH-------HHHhCCEEEEEecCCc--hHHHHHHHhhhh-hhhheEEeehhcccch
Confidence 3456889998753 11111 2457899999976221 111111111 11 1123799999999865
Q ss_pred CCChhhHHHHHHHHHhhcc----cCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 224 GTDFNCVGDWVVEATTKKK----LNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~----l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
.. .......+...+.... ....+++.+||+++.|+++|++.|.++++
T Consensus 210 ~~-a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 210 TA-ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hH-HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 42 2222222222221100 01146899999999999999999987654
No 386
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.32 E-value=0.00045 Score=64.33 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|++...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 37999999999999999999864
No 387
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.001 Score=62.78 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=69.7
Q ss_pred cEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCC---CC--hhhHHHHHHHh-CCCCEEEEEEcccCC
Q 008807 148 HMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVD---FN--GSFLARIRDLA-GANPIILVVTKVDLL 221 (553)
Q Consensus 148 ~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d---~~--~s~~~~l~~~~-~~~pvIlVlNKiDLl 221 (553)
..+.||+| .+.|++...+..+.|.-.|+|.|+.. |+ .+++..++... .+.-++|+.||+||.
T Consensus 57 lqiwDtaG------------qe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 57 LQIWDTAG------------QESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred EEEEecCC------------cHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 46789987 47899989999999999999999874 22 45565655543 456688999999997
Q ss_pred CCCC-ChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHH
Q 008807 222 PKGT-DFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 222 ~~~~-~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
.... ..++-+.|.. +.++- ...+||+++.|+++.+....
T Consensus 125 ~rR~Vs~EEGeaFA~----ehgLi---fmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 125 ARREVSKEEGEAFAR----EHGLI---FMETSAKTAENVEEAFINTA 164 (216)
T ss_pred ccccccHHHHHHHHH----HcCce---eehhhhhhhhhHHHHHHHHH
Confidence 6542 2333344431 22322 34789999999998765443
No 388
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.31 E-value=0.0011 Score=64.41 Aligned_cols=109 Identities=21% Similarity=0.160 Sum_probs=62.9
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEe----cCCccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRL----LSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~----l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
.+..+|...+|+.+++........-.+.... ..... .... ......++||+|.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~---------~~~~~--~~~~~~~~~~~~~~l~D~pG~------------ 58 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI---------EPNVA--TFILNSEGKGKKFRLVDVPGH------------ 58 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE---------eecce--EEEeecCCCCceEEEEECCCC------------
Confidence 3556788889999988766543211110000 00111 1111 1344678999874
Q ss_pred HHHHHHHHHhhhcc-cEEEEEcccCCCChhh------HHHHHHH----hCCCCEEEEEEcccCCCCC
Q 008807 169 DELREKLSHLRREK-ALIVKLVDIVDFNGSF------LARIRDL----AGANPIILVVTKVDLLPKG 224 (553)
Q Consensus 169 e~~~~~l~~~~~~a-dlIl~VVD~~d~~~s~------~~~l~~~----~~~~pvIlVlNKiDLl~~~ 224 (553)
..++..+...+..+ +.||+|+|+.+...++ +..+... ....|+++|.||+|+....
T Consensus 59 ~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 59 PKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 23445555556677 9999999999863221 1111111 1368999999999997654
No 389
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.31 E-value=0.00033 Score=64.52 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~ 22 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLG 22 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccC
Confidence 4789999999999999999653
No 390
>PLN03127 Elongation factor Tu; Provisional
Probab=97.31 E-value=0.0004 Score=75.60 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=42.7
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhh--hhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAM--AQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~--~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
+..++.++|.+|+|||||+|+|.+........... ..-.+......+|+|++......-.++ ..++||||...
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 45589999999999999999997531100000000 000000011238999987665543333 35999999854
No 391
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.29 E-value=0.0038 Score=69.37 Aligned_cols=123 Identities=11% Similarity=0.018 Sum_probs=68.7
Q ss_pred ccccccccCCCcccccCccccccC-----CCCCcccCCc--------hhhHhh-hccCccceEEEEEEecCCccEEEecC
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSE-----SDAPGYVDPD--------TYELKK-KHHQFKTVLCGRCRLLSHGHMITAVG 154 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d-----~~~~GY~~~~--------~f~t~~-~~~~~rd~ic~Rc~~l~~~~~~~dTa 154 (553)
.+.+.+.+.+-..+|+.+++...- -...|=+... .|.... +.+..-......+...++...++||+
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 344577888888899988775421 1112211100 010000 00100011122344556677899998
Q ss_pred CCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCC
Q 008807 155 GNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPK 223 (553)
Q Consensus 155 G~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~ 223 (553)
|. ..|.......+..+|.+|+|||+.+........+...+ .+.|+++++||+|+...
T Consensus 89 G~------------~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 89 GH------------EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIR 147 (527)
T ss_pred Ch------------hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCC
Confidence 74 24444455566789999999999874332223332222 46899999999998643
No 392
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.29 E-value=0.00047 Score=64.24 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++.+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 393
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.29 E-value=0.0021 Score=66.23 Aligned_cols=155 Identities=11% Similarity=0.050 Sum_probs=88.7
Q ss_pred ceeeccccCCCCCcCCCCCCcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCcccccCccccccCC
Q 008807 34 TLIVCKSTLSPETQFESDGAGAAAPTRGDRFLELQKAKEAAKVVVRDSKKKRKKKDKVLKVNSAVASCYGCGAPLQTSES 113 (553)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~g~g~~gp~~ge~~~e~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~C~GCG~~LQ~~d~ 113 (553)
.+.+.|+++.+- | .+++.++...+.+-+. +.....++..+|.+..|+++.+++.-.
T Consensus 5 ~~~~~w~g~~~~------------~--~~tq~~l~~~l~~l~~----------~~~~~~rIllvGktGVGKSSliNsIlG 60 (313)
T TIGR00991 5 QTPREWVGIQQF------------P--PATQTKLLELLGKLKE----------EDVSSLTILVMGKGGVGKSSTVNSIIG 60 (313)
T ss_pred ccCcceeccccC------------C--HHHHHHHHHHHHhccc----------ccccceEEEEECCCCCCHHHHHHHHhC
Confidence 345666666553 4 5666665554432221 123455789999999999999988654
Q ss_pred CCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhh--hcccEEEEE--c
Q 008807 114 DAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLR--REKALIVKL--V 189 (553)
Q Consensus 114 ~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~--~~adlIl~V--V 189 (553)
...-.+.+ |. .....++|..+...+....++||+|+... . ...+...+.+...+ ...|+||+| +
T Consensus 61 ~~v~~vs~--f~-----s~t~~~~~~~~~~~G~~l~VIDTPGL~d~----~-~~~e~~~~~ik~~l~~~g~DvVLyV~rL 128 (313)
T TIGR00991 61 ERIATVSA--FQ-----SEGLRPMMVSRTRAGFTLNIIDTPGLIEG----G-YINDQAVNIIKRFLLGKTIDVLLYVDRL 128 (313)
T ss_pred CCcccccC--CC-----CcceeEEEEEEEECCeEEEEEECCCCCch----H-HHHHHHHHHHHHHhhcCCCCEEEEEecc
Confidence 32211111 11 01124456556666777899999986311 1 11222333333222 258899999 4
Q ss_pred ccCCCC---hhhHHHHHHHhCC---CCEEEEEEcccCCCCC
Q 008807 190 DIVDFN---GSFLARIRDLAGA---NPIILVVTKVDLLPKG 224 (553)
Q Consensus 190 D~~d~~---~s~~~~l~~~~~~---~pvIlVlNKiDLl~~~ 224 (553)
|...+. ..++..+....+. .+.|+|+|++|.++.+
T Consensus 129 D~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 129 DAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred CcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 443332 3445555554442 5789999999998654
No 394
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.28 E-value=0.00049 Score=62.78 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=19.9
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 395
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.28 E-value=0.00036 Score=65.29 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=33.3
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGV 341 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi 341 (553)
+++++|.+|||||||+|+|.+... . ...+..|.+.. .+........++||||-
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~-~------------~~~~t~g~~~~--~~~~~~~~~~i~D~~G~ 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP-K------------KVAPTVGFTPT--KLRLDKYEVCIFDLGGG 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC-c------------cccCcccceEE--EEEECCEEEEEEECCCc
Confidence 478999999999999999986410 0 11233344432 23221123469999995
No 396
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.28 E-value=0.00041 Score=64.88 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.8
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~ 22 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD 22 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 397
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0033 Score=66.70 Aligned_cols=108 Identities=19% Similarity=0.099 Sum_probs=66.0
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-hhhHH--HHHHHhCCCCEEEEEEcccCCCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-GSFLA--RIRDLAGANPIILVVTKVDLLPK 223 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-~s~~~--~l~~~~~~~pvIlVlNKiDLl~~ 223 (553)
...|+|++|. +.|...+-..+.-.|..++|||+.+-. ....+ .+.++++.+..++|+||+|+.+.
T Consensus 51 ~~~fIDvpgh------------~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~ 118 (447)
T COG3276 51 VMGFIDVPGH------------PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE 118 (447)
T ss_pred ceEEeeCCCc------------HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH
Confidence 3457777542 344444444455789999999985422 22222 23445566777999999999865
Q ss_pred CCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 224 GTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.. +.+...+-.....+...+++.+|+++|.||++|.++|.+..
T Consensus 119 ~r----~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 119 AR----IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred HH----HHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 42 22221111111113334578899999999999998887644
No 398
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.26 E-value=0.00044 Score=64.08 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.7
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|...
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999999754
No 399
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.26 E-value=0.0004 Score=65.13 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.2
Q ss_pred cceEEeccCCCChhHHHHHHHh
Q 008807 273 RDVYILGSANVGKSAFINALLK 294 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~ 294 (553)
.+++++|.+|||||||+|+|..
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~ 31 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKL 31 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHcc
Confidence 4799999999999999999975
No 400
>PRK12735 elongation factor Tu; Reviewed
Probab=97.25 E-value=0.00037 Score=74.83 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=42.1
Q ss_pred hcccceEEeccCCCChhHHHHHHHhhhCCCC--hhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCcc
Q 008807 270 KKGRDVYILGSANVGKSAFINALLKKMGERD--PAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVH 342 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~--~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~ 342 (553)
.+..++.++|.+|+|||||+|+|+....... .........+.......|+|.+......-.++ ..++||||..
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 3455899999999999999999997321100 00000000011112257899875544432222 3599999964
No 401
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.23 E-value=0.0014 Score=59.36 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=71.6
Q ss_pred EEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCCCCEEEEEEcccCCCC
Q 008807 149 MITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGANPIILVVTKVDLLPK 223 (553)
Q Consensus 149 ~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~~pvIlVlNKiDLl~~ 223 (553)
.+.||+| .+.|+..+....+..+.|+.|.|+++-+ ..|+.++.......|.+||.||.|+...
T Consensus 60 qIwDtAG------------qErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 60 QIWDTAG------------QERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred EEeeccc------------HHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 5678876 5788888888888889999999998643 3455555554556788999999998654
Q ss_pred CCC-hhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 224 GTD-FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 224 ~~~-~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..- .+....|. .+.+ ...+.+|||...+++..+..|.+
T Consensus 128 rvV~t~dAr~~A------~~mg-ie~FETSaKe~~NvE~mF~cit~ 166 (198)
T KOG0079|consen 128 RVVDTEDARAFA------LQMG-IELFETSAKENENVEAMFHCITK 166 (198)
T ss_pred eeeehHHHHHHH------HhcC-chheehhhhhcccchHHHHHHHH
Confidence 321 22233342 2333 46789999999999987766653
No 402
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.23 E-value=0.0036 Score=60.62 Aligned_cols=149 Identities=19% Similarity=0.098 Sum_probs=83.7
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|....|++++.-.--. +..... + .....|.+++.+...+. ...+.||+|. +.
T Consensus 5 kvvvlG~~gVGKSal~~qf~~---~~f~~~-y-----~ptied~y~k~~~v~~~~~~l~ilDt~g~------------~~ 63 (196)
T KOG0395|consen 5 KVVVLGAGGVGKSALTIQFLT---GRFVED-Y-----DPTIEDSYRKELTVDGEVCMLEILDTAGQ------------EE 63 (196)
T ss_pred EEEEECCCCCCcchheeeecc---cccccc-c-----CCCccccceEEEEECCEEEEEEEEcCCCc------------cc
Confidence 566777777888877533222 111111 0 11122777787777644 2357888762 12
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCC-CChhhHHHHHHHHHhhcc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKG-TDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~-~~~~~~~~~~~~~~~~~~ 242 (553)
+.......+...+..+.|.++.|.. ..+...+.... ...|+++|.||+||.... ...+.-... ...
T Consensus 64 ~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l------a~~ 137 (196)
T KOG0395|consen 64 FSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL------ARS 137 (196)
T ss_pred ChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH------HHh
Confidence 2222333455667778888887643 22333332221 346999999999997632 222211111 112
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHh
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.+ ...+.+||+.+.++++++..|...
T Consensus 138 ~~-~~f~E~Sak~~~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 138 WG-CAFIETSAKLNYNVDEVFYELVRE 163 (196)
T ss_pred cC-CcEEEeeccCCcCHHHHHHHHHHH
Confidence 22 236789999999999988777653
No 403
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.23 E-value=0.00061 Score=65.21 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.1
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~ 23 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDG 23 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 404
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.23 E-value=0.00065 Score=62.94 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=20.4
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 405
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.22 E-value=0.00049 Score=63.76 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.1
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+++++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 406
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.21 E-value=0.0016 Score=66.24 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=48.9
Q ss_pred EEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEE
Q 008807 139 GRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVT 216 (553)
Q Consensus 139 ~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlN 216 (553)
..+.+.++...++||+|.. .|.......+..+|.+++|+|+.+........+...+ .+.|+++++|
T Consensus 64 ~~~~~~~~~i~liDTPG~~------------df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvN 131 (267)
T cd04169 64 MQFEYRDCVINLLDTPGHE------------DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFIN 131 (267)
T ss_pred EEEeeCCEEEEEEECCCch------------HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEE
Confidence 3555666778899998752 3333344556789999999999874333223333222 3689999999
Q ss_pred cccCCCC
Q 008807 217 KVDLLPK 223 (553)
Q Consensus 217 KiDLl~~ 223 (553)
|+|+...
T Consensus 132 K~D~~~a 138 (267)
T cd04169 132 KLDREGR 138 (267)
T ss_pred CCccCCC
Confidence 9998654
No 407
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.21 E-value=0.00041 Score=64.57 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~ 23 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSE 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 408
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.21 E-value=0.00079 Score=62.41 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|...
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~ 30 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQG 30 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999854
No 409
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.20 E-value=0.00061 Score=65.14 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.7
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~ 22 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLN 22 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999853
No 410
>PRK00049 elongation factor Tu; Reviewed
Probab=97.19 E-value=0.00046 Score=74.07 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=41.9
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCCh--hhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCcc
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDP--AAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVH 342 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~--~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~ 342 (553)
+..++.++|.+|+|||||+++|+........ ....+--.+......+|+|++......-.++ ..++||||..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 4458999999999999999999974211000 0000000000011247899986555432222 3599999974
No 411
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.19 E-value=0.00081 Score=62.55 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.7
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+++..
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~ 28 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTN 28 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999864
No 412
>PRK00007 elongation factor G; Reviewed
Probab=97.18 E-value=0.00054 Score=78.78 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=41.7
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCcc------CCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQ------SAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~------S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
+++.++|.+|+|||||+|+|+............. ...++ ...+|+|++.....+...+ ..++||||...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~--~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVH--DGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccc--CCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3899999999999999999986433211100000 00001 0246888875544443333 45999999753
No 413
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.18 E-value=0.00084 Score=63.63 Aligned_cols=22 Identities=14% Similarity=0.419 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~ 23 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQG 23 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 414
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.15 E-value=0.00045 Score=63.17 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++||.+++|||||+++|.+.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 37999999999999999999975
No 415
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.14 E-value=0.00065 Score=62.94 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=19.6
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+++++..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~ 22 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTK 22 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhC
Confidence 3789999999999999999853
No 416
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.14 E-value=0.00094 Score=65.30 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=20.1
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||||+|.+.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~ 23 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKE 23 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 417
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.14 E-value=0.00065 Score=78.11 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=42.3
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCC------CCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSA------VPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~------~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
+++.++|.+|+|||||+|+|+............. ...++.+ ..|+|.+.....+..++ ..++||||....
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~--~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVH--DGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCcccccccc--CCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 3899999999999999999986533211100000 0001111 46888875444433333 459999998643
No 418
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.14 E-value=0.00088 Score=62.20 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 419
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.00032 Score=73.15 Aligned_cols=36 Identities=39% Similarity=0.469 Sum_probs=28.7
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeec
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGP 323 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~ 323 (553)
.+.|||.||||||||+|+|.... +-.+++|-||.++
T Consensus 4 ~~GIVGlPNVGKSTlFnAlT~~~--------------a~~aNYPF~TIeP 39 (372)
T COG0012 4 KIGIVGLPNVGKSTLFNALTKAG--------------AEIANYPFCTIEP 39 (372)
T ss_pred eeEEecCCCCcHHHHHHHHHcCC--------------ccccCCCcccccC
Confidence 68899999999999999998752 2245678888764
No 420
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.12 E-value=0.00065 Score=72.90 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=42.5
Q ss_pred hhcccceEEeccCCCChhHHHHHHHhhhCCCChhhh--hhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCcc
Q 008807 269 EKKGRDVYILGSANVGKSAFINALLKKMGERDPAAA--MAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVH 342 (553)
Q Consensus 269 ~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~--~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~ 342 (553)
..+..++.++|..|+|||||+++|+........... ...-.+.......|+|.+...+.....+ ..++||||..
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 344568999999999999999999854110000000 0000000011137899886655542222 3599999964
No 421
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.12 E-value=0.00092 Score=66.69 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred ceEEeccCCCChhHHHHHHHhhh
Q 008807 274 DVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
++.++|.+|+|||||+|+|+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~ 23 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTS 23 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999763
No 422
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.11 E-value=0.0022 Score=68.82 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=49.7
Q ss_pred ccEEEEEcccCCC-C------hhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccC
Q 008807 182 KALIVKLVDIVDF-N------GSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSK 254 (553)
Q Consensus 182 adlIl~VVD~~d~-~------~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk 254 (553)
...||++.|++.- - ..+...+..+..++|.|+|+||+|++..+...+.-++ +.+.+... +-..|+..|..
T Consensus 248 raaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~-ll~~~~~~--~~v~v~~tS~~ 324 (620)
T KOG1490|consen 248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQE-LLQTIIDD--GNVKVVQTSCV 324 (620)
T ss_pred hhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHH-HHHHHHhc--cCceEEEeccc
Confidence 3578999999852 1 1233344455578999999999999977643322222 22222211 11457889999
Q ss_pred CccChhhhH
Q 008807 255 SLAGIVGVA 263 (553)
Q Consensus 255 ~g~gi~~Ll 263 (553)
+..|+-++.
T Consensus 325 ~eegVm~Vr 333 (620)
T KOG1490|consen 325 QEEGVMDVR 333 (620)
T ss_pred chhceeeHH
Confidence 999987654
No 423
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.11 E-value=0.0011 Score=61.80 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 424
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.09 E-value=0.0009 Score=63.60 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||||++...
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~ 26 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFN 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 425
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.09 E-value=0.0011 Score=63.01 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.5
Q ss_pred ccceEEeccCCCChhHHHHHHHh
Q 008807 272 GRDVYILGSANVGKSAFINALLK 294 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~ 294 (553)
..+++++|.+|||||||++++..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~ 39 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKL 39 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 35799999999999999999964
No 426
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.09 E-value=0.0011 Score=62.30 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 6 ki~ivG~~~vGKTsli~~~~~~ 27 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 427
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.08 E-value=0.00074 Score=62.99 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=19.4
Q ss_pred eEEeccCCCChhHHHHHHHhh
Q 008807 275 VYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 275 v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++++|.+|||||||+|++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 428
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.07 E-value=0.0012 Score=67.04 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.3
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++.++|.+|+|||||+|+|+..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 57999999999999999999975
No 429
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.06 E-value=0.0012 Score=60.97 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+++++..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 430
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.05 E-value=0.0011 Score=61.82 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=19.1
Q ss_pred eEEeccCCCChhHHHHHHHhh
Q 008807 275 VYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 275 v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++++|.+|||||||+|++...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~ 21 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTN 21 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999999864
No 431
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0033 Score=57.71 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=65.4
Q ss_pred cEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccC
Q 008807 148 HMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDL 220 (553)
Q Consensus 148 ~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDL 220 (553)
..+.||+| .+.|++.......+|--.+++.|++... ..|+..+...+ .+-.++++.||+||
T Consensus 69 LQlWDTAG------------QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL 136 (219)
T KOG0081|consen 69 LQLWDTAG------------QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL 136 (219)
T ss_pred Eeeecccc------------HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch
Confidence 46788876 5788887777778888899999998632 23334443322 34568999999999
Q ss_pred CCCCCCh-hhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHH
Q 008807 221 LPKGTDF-NCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQ 267 (553)
Q Consensus 221 l~~~~~~-~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~ 267 (553)
....... .+..+ + ..+++ .+.+.+||-+|.++++-++.|.
T Consensus 137 ~~~R~Vs~~qa~~-L-----a~kyg-lPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 137 EDQRVVSEDQAAA-L-----ADKYG-LPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred hhhhhhhHHHHHH-H-----HHHhC-CCeeeeccccCcCHHHHHHHHH
Confidence 7543211 11111 1 12333 4568899999999887555443
No 432
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.04 E-value=0.00097 Score=62.29 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=20.0
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 433
>PRK12736 elongation factor Tu; Reviewed
Probab=97.04 E-value=0.00087 Score=71.92 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=41.5
Q ss_pred hcccceEEeccCCCChhHHHHHHHhhhCCCCh--hhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCc
Q 008807 270 KKGRDVYILGSANVGKSAFINALLKKMGERDP--AAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGV 341 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~--~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi 341 (553)
.+..++.++|.+|+|||||+++|++....... ......-.+.......|+|.+........++ ..++||||.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 34568999999999999999999864211000 0000000000011246899886555432222 359999994
No 434
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.04 E-value=0.00084 Score=68.06 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.0
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|+|||||+|+|+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999865
No 435
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0074 Score=56.95 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=88.7
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
..++-.+|--++|+.+.|-..--...-=+-| |. ..-+.-.......+.+.|++|- +.
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~vttvP----Ti-------GfnVE~v~ykn~~f~vWDvGGq------------~k 73 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTVP----TI-------GFNVETVEYKNISFTVWDVGGQ------------EK 73 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCcccCCC----cc-------ccceeEEEEcceEEEEEecCCC------------cc
Confidence 3466778888999999875433221111100 00 1223344444677889999763 23
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhccc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKL 243 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l 243 (553)
++..-.+...+.+.||+|||..|-. ....+++..+. ++.|+++..||.|+...- ....+.+.+ ....+
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al-s~~ei~~~L----~l~~l 148 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL-SAAEITNKL----GLHSL 148 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC-CHHHHHhHh----hhhcc
Confidence 3333445567899999999999843 11112222222 367899999999985432 233332221 11111
Q ss_pred C--ceeEEEeccCCccChhhhHHHHHHhh
Q 008807 244 N--VLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 244 ~--~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
. .-.+...+|.+|.|+.+-++.|.+.+
T Consensus 149 ~~~~w~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 149 RSRNWHIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred CCCCcEEeeccccccccHHHHHHHHHHHH
Confidence 1 13467789999999998887776543
No 436
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.00 E-value=0.0015 Score=61.31 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~ 23 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD 23 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999975
No 437
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.00 E-value=0.0014 Score=64.10 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||||+|...
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~ 25 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEG 25 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 438
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.00 E-value=0.0014 Score=63.24 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|++...
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999864
No 439
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.99 E-value=0.0016 Score=62.01 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~ 23 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTED 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 440
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=96.98 E-value=0.0011 Score=61.38 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=19.2
Q ss_pred ceEEeccCCCChhHHHHHHHh
Q 008807 274 DVYILGSANVGKSAFINALLK 294 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~ 294 (553)
+++++|.+|||||||++++..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~ 22 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL 22 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999964
No 441
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0022 Score=61.66 Aligned_cols=100 Identities=22% Similarity=0.176 Sum_probs=67.3
Q ss_pred cEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCC---CC--hhhHHHHHHHh-CCCCEEEEEEcccCC
Q 008807 148 HMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVD---FN--GSFLARIRDLA-GANPIILVVTKVDLL 221 (553)
Q Consensus 148 ~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d---~~--~s~~~~l~~~~-~~~pvIlVlNKiDLl 221 (553)
.++.|||| ++.++.......+.|.-.++|.|++. |+ ..|+.+|++.+ .+.+++||.||+||.
T Consensus 65 aqIWDTAG------------QERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 65 AQIWDTAG------------QERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred Eeeecccc------------hhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 46889986 57788777777888889999999963 22 45667777665 357889999999997
Q ss_pred CCCCC-hhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHH
Q 008807 222 PKGTD-FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEI 266 (553)
Q Consensus 222 ~~~~~-~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L 266 (553)
....- .+..+.+ ...++ ...+.+||..+.+++...+.+
T Consensus 133 ~lraV~te~~k~~----Ae~~~---l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 133 HLRAVPTEDGKAF----AEKEG---LFFLETSALDATNVEKAFERV 171 (222)
T ss_pred hccccchhhhHhH----HHhcC---ceEEEecccccccHHHHHHHH
Confidence 52211 1111111 11223 345789999999998766544
No 442
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.97 E-value=0.00085 Score=64.12 Aligned_cols=26 Identities=38% Similarity=0.741 Sum_probs=23.1
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGE 298 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~ 298 (553)
+++.++|..++|||||+++|+.....
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~ 29 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGA 29 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTS
T ss_pred EEEEEECCCCCCcEeechhhhhhccc
Confidence 47999999999999999999987543
No 443
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.96 E-value=0.00077 Score=59.55 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=17.9
Q ss_pred EeccCCCChhHHHHHHHhhh
Q 008807 277 ILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 277 ivG~~NVGKSTLIN~L~~~~ 296 (553)
++|.+|+|||||+|+|.+..
T Consensus 1 iiG~~~~GKStl~~~l~~~~ 20 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGE 20 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCC
Confidence 58999999999999999763
No 444
>COG2262 HflX GTPases [General function prediction only]
Probab=96.96 E-value=0.00093 Score=70.31 Aligned_cols=59 Identities=27% Similarity=0.139 Sum_probs=36.4
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeec-CCcEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFL-GGGKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~-~~~~liDTPGi~~~ 344 (553)
.+.+||++|+|||||+|+|.+...+.. ...-.. .-.||| .+.+.+ ....+-||=||...
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT~~~~~~~--------d~LFAT-LdpttR---~~~l~~g~~vlLtDTVGFI~~ 253 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALTGADVYVA--------DQLFAT-LDPTTR---RIELGDGRKVLLTDTVGFIRD 253 (411)
T ss_pred eEEEEeeccccHHHHHHHHhccCeecc--------cccccc-ccCcee---EEEeCCCceEEEecCccCccc
Confidence 699999999999999999997643311 000000 112555 333221 22458899999753
No 445
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.95 E-value=0.0017 Score=59.91 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.6
Q ss_pred ceEEeccCCCChhHHHHHHHh
Q 008807 274 DVYILGSANVGKSAFINALLK 294 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~ 294 (553)
+++++|.+|||||||+|+|..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 446
>PRK12739 elongation factor G; Reviewed
Probab=96.95 E-value=0.0011 Score=76.35 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=40.8
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhc----CCccCCCCCceeecEEEEeecCC--cEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKY----RPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~----~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~ 342 (553)
+++.++|.+|+|||||+|+|+................ ..-....+|+|.+.....+..++ ..++||||..
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 4799999999999999999986532211000000000 00001246788875444443334 3589999975
No 447
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.95 E-value=0.011 Score=55.83 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=92.3
Q ss_pred ccccCCCcccccCccccccCCCCCcccC----CchhhHhhhccCccceEEEEEEecC-CccEEEecCCCCCccCCCcccc
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVD----PDTYELKKKHHQFKTVLCGRCRLLS-HGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~----~~~f~t~~~~~~~rd~ic~Rc~~l~-~~~~~~dTaG~vgf~~~~~~~l 167 (553)
++...++.-+|+.+.++......+--+. ...... +...+--.-.+.|.... +..-+.+|+|
T Consensus 12 KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~--kr~tTva~D~g~~~~~~~~~v~LfgtPG------------ 77 (187)
T COG2229 12 KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKG--KRPTTVAMDFGSIELDEDTGVHLFGTPG------------ 77 (187)
T ss_pred eEEEEcccccchhhHHHHhhccccceeecccccccccc--ccceeEeecccceEEcCcceEEEecCCC------------
Confidence 4555677777887777766654322121 110000 00000011125666554 5666777876
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh---CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccC
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA---GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLN 244 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~---~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~ 244 (553)
.+.|+-.++-..+.++-.+.+||.+++......++.+.. ...|+++.+||.||.+.. ..+.+++++.. ..+.
T Consensus 78 q~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~-ppe~i~e~l~~----~~~~ 152 (187)
T COG2229 78 QERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDAL-PPEKIREALKL----ELLS 152 (187)
T ss_pred cHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCC-CHHHHHHHHHh----ccCC
Confidence 345655566666788999999999987653222222222 237999999999997665 35555555421 1123
Q ss_pred ceeEEEeccCCccChhhhHHHHHH
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.+++.++|.+++|..+.+..+..
T Consensus 153 -~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 153 -VPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred -CceeeeecccchhHHHHHHHHHh
Confidence 56899999999998887766653
No 448
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.95 E-value=0.0014 Score=73.74 Aligned_cols=59 Identities=24% Similarity=0.229 Sum_probs=39.0
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-e-cC-CcEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-F-LG-GGKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~-~~-~~~liDTPGi~~~ 344 (553)
...+.++|.+|+|||||+|+|++... .....+|+|.+.-.... . .. ...++||||-...
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v--------------~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F 148 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKV--------------AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF 148 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCc--------------ccccCCceeecceEEEEEECCCcEEEEEECCCCcch
Confidence 34899999999999999999986421 12234677775322211 1 12 3569999996543
No 449
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.94 E-value=0.0019 Score=60.36 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||||+++..
T Consensus 4 ki~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 4 KIIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 450
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.94 E-value=0.0015 Score=64.11 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=41.8
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhh--hhh----hhc-----------CCccCCCCCceeecEEEEeecCC--cE
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAA--AMA----QKY-----------RPIQSAVPGTTLGPIQIDAFLGG--GK 334 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~--~~~----~~~-----------~~~~S~~PGTT~~~i~i~~~~~~--~~ 334 (553)
++.++|.+++|||||+.+|+.....-.... ... ..+ ........|+|++.....+...+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 478999999999999999986543211100 000 000 01112257899987665543333 35
Q ss_pred EEEcCCcc
Q 008807 335 LYDTPGVH 342 (553)
Q Consensus 335 liDTPGi~ 342 (553)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999963
No 451
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.93 E-value=0.001 Score=58.04 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.8
Q ss_pred ceEEeccCCCChhHHHHHHHhhh
Q 008807 274 DVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
+++|+|.+||||||||++|++..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999763
No 452
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.93 E-value=0.0013 Score=61.99 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.1
Q ss_pred cceEEeccCCCChhHHHHHHHh
Q 008807 273 RDVYILGSANVGKSAFINALLK 294 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~ 294 (553)
.+++++|.+|||||||++++..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~ 35 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKL 35 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4799999999999999999964
No 453
>PLN00023 GTP-binding protein; Provisional
Probab=96.92 E-value=0.0035 Score=65.07 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=65.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC---------------CccEEEecCCCC
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS---------------HGHMITAVGGNG 157 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~---------------~~~~~~dTaG~v 157 (553)
++.++|..+.|+.++++..-... |... .-.|. .-+...+.+.... ....+.||+|.
T Consensus 23 KIVLLGdsGVGKTSLI~rf~~g~--F~~~-~~pTI-----G~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq- 93 (334)
T PLN00023 23 RVLVVGDSGVGKSSLVHLIVKGS--SIAR-PPQTI-----GCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH- 93 (334)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--cccc-cCCce-----eeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC-
Confidence 77888999999999998765321 1111 00010 0011122222211 12568899873
Q ss_pred CccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC-------------CCCEEEEEEccc
Q 008807 158 GYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG-------------ANPIILVVTKVD 219 (553)
Q Consensus 158 gf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~-------------~~pvIlVlNKiD 219 (553)
+.|+.........+|.+|+|+|+++.. ..++..+..... +.|++||.||+|
T Consensus 94 -----------ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 94 -----------ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred -----------hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 345554555577999999999998743 223344443311 368999999999
Q ss_pred CCCC
Q 008807 220 LLPK 223 (553)
Q Consensus 220 Ll~~ 223 (553)
|..+
T Consensus 163 L~~~ 166 (334)
T PLN00023 163 IAPK 166 (334)
T ss_pred cccc
Confidence 9764
No 454
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.92 E-value=0.0015 Score=64.24 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=36.4
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~~ 344 (553)
.+++++|.+|||||||+++++..... ....+..|++.....+..... ...++||||....
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~------------~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFE------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCC------------CccCCccceeEEEEEEEECCeEEEEEEEECCCchhh
Confidence 47999999999999999998754211 112233444443333321111 2358999997543
No 455
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.92 E-value=0.003 Score=63.05 Aligned_cols=22 Identities=18% Similarity=0.554 Sum_probs=20.7
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.++++|.+++||||+||+|.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCC
Confidence 6999999999999999999976
No 456
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.90 E-value=0.0017 Score=62.55 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.0
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+++..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~ 22 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYD 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 457
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.90 E-value=0.0018 Score=62.46 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+++..
T Consensus 2 KivivG~~~vGKTsli~~l~~~ 23 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 458
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.86 E-value=0.0091 Score=60.01 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=72.2
Q ss_pred hcccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccc
Q 008807 87 KKDKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 87 ~~~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~ 166 (553)
......++..+|.+.+|+++.+++.-....-.+. .|. ..++.....++...+....++||+|+...... . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~--~~~-----~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~-~-~ 97 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATS--AFQ-----SETLRVREVSGTVDGFKLNIIDTPGLLESVMD-Q-R 97 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC--CCC-----CceEEEEEEEEEECCeEEEEEECCCcCcchhh-H-H
Confidence 3455668999999999999999876653211111 111 11112222333444556789999886422100 0 1
Q ss_pred cHHHHHHHHHHhhh--cccEEEEEc--ccCCCC---hhhHHHHHHHhCC---CCEEEEEEcccCCCCCC
Q 008807 167 SADELREKLSHLRR--EKALIVKLV--DIVDFN---GSFLARIRDLAGA---NPIILVVTKVDLLPKGT 225 (553)
Q Consensus 167 l~e~~~~~l~~~~~--~adlIl~VV--D~~d~~---~s~~~~l~~~~~~---~pvIlVlNKiDLl~~~~ 225 (553)
..+...+.+...++ ..++|++|. |...+. ..++..+.+..+. .++++|+||+|.++++.
T Consensus 98 ~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 98 VNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 12223333333332 467888875 433332 2344555554442 47999999999987654
No 459
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.86 E-value=0.0024 Score=59.63 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++++++|.+|||||||++++...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 460
>PLN03126 Elongation factor Tu; Provisional
Probab=96.85 E-value=0.0017 Score=71.20 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=41.6
Q ss_pred hcccceEEeccCCCChhHHHHHHHhhhCCCCh-hhh-hhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCcc
Q 008807 270 KKGRDVYILGSANVGKSAFINALLKKMGERDP-AAA-MAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVH 342 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~-~~~-~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~ 342 (553)
.+..++.++|.+|+|||||+|+|+.....-.. ... ...-.........|+|.+.....+-.+ ...++||||..
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 34558999999999999999999964221000 000 000000011224688887544433222 24699999964
No 461
>PLN03110 Rab GTPase; Provisional
Probab=96.84 E-value=0.0024 Score=62.56 Aligned_cols=23 Identities=22% Similarity=0.535 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+||||||||++|.+.
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~ 35 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRN 35 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999864
No 462
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.81 E-value=0.0056 Score=61.14 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=54.0
Q ss_pred ceEEEEEEec-CCccEEEecCCCCCccC-CCccccHHHHHHHHHHhhh-cccEEEEEcccCC-CChhhHHHHHHHh--CC
Q 008807 135 TVLCGRCRLL-SHGHMITAVGGNGGYAG-GKQFVSADELREKLSHLRR-EKALIVKLVDIVD-FNGSFLARIRDLA--GA 208 (553)
Q Consensus 135 d~ic~Rc~~l-~~~~~~~dTaG~vgf~~-~~~~~l~e~~~~~l~~~~~-~adlIl~VVD~~d-~~~s~~~~l~~~~--~~ 208 (553)
+++.-+.+-. ..+..++||+|+..... ..+....+.+++++.++++ .+++|++|+|+.. +..+-..++...+ ..
T Consensus 113 ~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~ 192 (240)
T smart00053 113 VPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQG 192 (240)
T ss_pred cceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcC
Confidence 3444444433 24678999987631111 1122345667777777776 5679999999864 3222211222221 36
Q ss_pred CCEEEEEEcccCCCCC
Q 008807 209 NPIILVVTKVDLLPKG 224 (553)
Q Consensus 209 ~pvIlVlNKiDLl~~~ 224 (553)
+++++|+||+|++.+.
T Consensus 193 ~rti~ViTK~D~~~~~ 208 (240)
T smart00053 193 ERTIGVITKLDLMDEG 208 (240)
T ss_pred CcEEEEEECCCCCCcc
Confidence 7999999999998754
No 463
>PTZ00369 Ras-like protein; Provisional
Probab=96.80 E-value=0.0021 Score=61.30 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||++++...
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~ 28 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQN 28 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999864
No 464
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=96.80 E-value=0.0033 Score=58.88 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.8
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||++++...
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~ 23 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTN 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 465
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0068 Score=62.29 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=54.2
Q ss_pred hcccEEEEEcccCCCChhhHHH---HHHHhCCCCEEEEEEcccCCCCCCChhhHHH---HHHHHHhhcccCc-eeEEEec
Q 008807 180 REKALIVKLVDIVDFNGSFLAR---IRDLAGANPIILVVTKVDLLPKGTDFNCVGD---WVVEATTKKKLNV-LSVHLTS 252 (553)
Q Consensus 180 ~~adlIl~VVD~~d~~~s~~~~---l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~---~~~~~~~~~~l~~-~~vi~iS 252 (553)
.--|+.+.|+|+..--..-..+ +..+ -.+..++|+||+|++|+......+.+ .+++-+...+++. .+++.+|
T Consensus 92 qiiDlm~lviDv~kG~QtQtAEcLiig~~-~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vs 170 (522)
T KOG0461|consen 92 QIIDLMILVIDVQKGKQTQTAECLIIGEL-LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVS 170 (522)
T ss_pred heeeeeeEEEehhcccccccchhhhhhhh-hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEe
Confidence 3458889999987432111111 1122 23568899999999998654433332 2333333334432 5689999
Q ss_pred cCCc----cChhhhHHHHHH
Q 008807 253 SKSL----AGIVGVASEIQK 268 (553)
Q Consensus 253 Ak~g----~gi~~Ll~~L~~ 268 (553)
|+.| .++.+|++.|..
T Consensus 171 a~~G~~~~~~i~eL~e~l~s 190 (522)
T KOG0461|consen 171 AADGYFKEEMIQELKEALES 190 (522)
T ss_pred cCCCccchhHHHHHHHHHHH
Confidence 9999 678888877765
No 466
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.77 E-value=0.0026 Score=61.76 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|.|...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~ 23 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 467
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.76 E-value=0.0032 Score=58.38 Aligned_cols=22 Identities=18% Similarity=0.536 Sum_probs=20.0
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||++++...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~ 23 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN 23 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 468
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.75 E-value=0.002 Score=63.41 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.9
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|++...
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~ 23 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSG 23 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999753
No 469
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.74 E-value=0.012 Score=62.72 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=65.5
Q ss_pred EecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHH--HHhCCCCEEEEEEccc
Q 008807 142 RLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIR--DLAGANPIILVVTKVD 219 (553)
Q Consensus 142 ~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~--~~~~~~pvIlVlNKiD 219 (553)
.+.+....++||+|...|..+ .+.++...|-||++||+.+-+..--..+. .+..+.+.|+|+||+|
T Consensus 64 ~~~~~~INIvDTPGHADFGGE------------VERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiD 131 (603)
T COG1217 64 NYNGTRINIVDTPGHADFGGE------------VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKID 131 (603)
T ss_pred ecCCeEEEEecCCCcCCccch------------hhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCC
Confidence 344455678999986555432 44456677999999999975432221111 1112444478999999
Q ss_pred CCCCCCChhhHHHHHHHHHhh-----cccCceeEEEeccCCcc----------ChhhhHHHHHHh
Q 008807 220 LLPKGTDFNCVGDWVVEATTK-----KKLNVLSVHLTSSKSLA----------GIVGVASEIQKE 269 (553)
Q Consensus 220 Ll~~~~~~~~~~~~~~~~~~~-----~~l~~~~vi~iSAk~g~----------gi~~Ll~~L~~~ 269 (553)
-.... ..++-+-+++.+.. ..+. ..+++.||..|+ .+..|++.|.++
T Consensus 132 rp~Ar--p~~Vvd~vfDLf~~L~A~deQLd-FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~h 193 (603)
T COG1217 132 RPDAR--PDEVVDEVFDLFVELGATDEQLD-FPIVYASARNGTASLDPEDEADDMAPLFETILDH 193 (603)
T ss_pred CCCCC--HHHHHHHHHHHHHHhCCChhhCC-CcEEEeeccCceeccCccccccchhHHHHHHHHh
Confidence 75433 33332222232222 3345 358889999876 345566666554
No 470
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.72 E-value=0.0079 Score=61.51 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=36.4
Q ss_pred CEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 210 PIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 210 pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.-++|+||+||++... +...+.+.+ ........++.+||++|.|+++|++.|.+
T Consensus 232 ADIVVLNKiDLl~~~~~dle~~~~~l-----r~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 232 ASLMLLNKVDLLPYLNFDVEKCIACA-----REVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred CcEEEEEhHHcCcccHHHHHHHHHHH-----HhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999986421 122222221 12223467999999999999999998875
No 471
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.71 E-value=0.0019 Score=72.54 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.6
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+.++|.+|+|||||||+|++.
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~ 27 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGS 27 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999975
No 472
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.71 E-value=0.0024 Score=60.73 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.1
Q ss_pred cceEEeccCCCChhHHHHHHHh
Q 008807 273 RDVYILGSANVGKSAFINALLK 294 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~ 294 (553)
.+++++|.+|||||||++++..
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~ 39 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKL 39 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHcc
Confidence 4799999999999999999974
No 473
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.71 E-value=0.0096 Score=59.82 Aligned_cols=123 Identities=18% Similarity=0.179 Sum_probs=77.4
Q ss_pred cCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC----hhhHHHHHHHhCCCCEEEEEEccc
Q 008807 144 LSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN----GSFLARIRDLAGANPIILVVTKVD 219 (553)
Q Consensus 144 l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~----~s~~~~l~~~~~~~pvIlVlNKiD 219 (553)
..+...+.||+|.. ... .-..+.++...+.+.+.|+|++++|+.|.. ..++..+.-...++++++|+|-+|
T Consensus 85 ~~~~l~lwDtPG~g---dg~--~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D 159 (296)
T COG3596 85 DGENLVLWDTPGLG---DGK--DKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQAD 159 (296)
T ss_pred cccceEEecCCCcc---cch--hhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhh
Confidence 34778899998752 211 113346666667777889999999998865 344444433334589999999999
Q ss_pred CCCCCC--------ChhhHHHHHHHHHh---hcccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 220 LLPKGT--------DFNCVGDWVVEATT---KKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 220 Ll~~~~--------~~~~~~~~~~~~~~---~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
...+.. ....+++++.+... ..-..+..|+.+|+..+||++.|..++-..++
T Consensus 160 ~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 160 RAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 765420 11223333322111 11112456888899999999999888876543
No 474
>PLN03108 Rab family protein; Provisional
Probab=96.70 E-value=0.0035 Score=61.09 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|...
T Consensus 8 kivivG~~gvGKStLi~~l~~~ 29 (210)
T PLN03108 8 KYIIIGDTGVGKSCLLLQFTDK 29 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999864
No 475
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.70 E-value=0.0045 Score=60.25 Aligned_cols=80 Identities=16% Similarity=0.075 Sum_probs=48.8
Q ss_pred cEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcccCceeEEEeccCCccChhh
Q 008807 183 ALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVG 261 (553)
Q Consensus 183 dlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~ 261 (553)
+.-+.|+|+.+.+....... .. -..+.++|+||+|+.+... ....+.+.+. ......+++.+||+++.|+++
T Consensus 125 ~~~i~Vvd~~~~d~~~~~~~-~~-~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~-----~~~~~~~i~~~Sa~~g~gv~~ 197 (207)
T TIGR00073 125 HMRVVLLSVTEGDDKPLKYP-GM-FKEADLIVINKADLAEAVGFDVEKMKADAK-----KINPEAEIILMSLKTGEGLDE 197 (207)
T ss_pred CeEEEEEecCcccchhhhhH-hH-HhhCCEEEEEHHHccccchhhHHHHHHHHH-----HhCCCCCEEEEECCCCCCHHH
Confidence 44456777766543332211 11 2467799999999975421 1222333321 112235689999999999999
Q ss_pred hHHHHHHh
Q 008807 262 VASEIQKE 269 (553)
Q Consensus 262 Ll~~L~~~ 269 (553)
+++.+.+.
T Consensus 198 l~~~i~~~ 205 (207)
T TIGR00073 198 WLEFLEGQ 205 (207)
T ss_pred HHHHHHHh
Confidence 99988754
No 476
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.67 E-value=0.022 Score=55.21 Aligned_cols=153 Identities=19% Similarity=0.125 Sum_probs=86.9
Q ss_pred cccccCCCcccccCccccccCCCCCc--ccCCchhhHhhhccCccceEEEEEEec---CCccEEEecCCCCCccCCCccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPG--YVDPDTYELKKKHHQFKTVLCGRCRLL---SHGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~G--Y~~~~~f~t~~~~~~~rd~ic~Rc~~l---~~~~~~~dTaG~vgf~~~~~~~ 166 (553)
.++-..|...+|+.++++..-.+... |.+.. . ...-..+... .....++||+|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~-~----------~~~~~~~~~~~~~~~~~~~~Dt~g----------- 63 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTI-G----------NLDPAKTIEPYRRNIKLQLWDTAG----------- 63 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCce-e----------eeeEEEEEEeCCCEEEEEeecCCC-----------
Confidence 35667788888898888776654433 22110 0 1122233222 12356778876
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCC------hhhHHHHHHHhC-CCCEEEEEEcccCCCCCCChhhHH-------H
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFN------GSFLARIRDLAG-ANPIILVVTKVDLLPKGTDFNCVG-------D 232 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~------~s~~~~l~~~~~-~~pvIlVlNKiDLl~~~~~~~~~~-------~ 232 (553)
.+.++.........++.++.++|..+.. ..+...+..... ..|+++|.||+||.........+. .
T Consensus 64 -q~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (219)
T COG1100 64 -QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVV 142 (219)
T ss_pred -HHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcc
Confidence 4567676777777999999999988743 223333333322 579999999999987642111100 0
Q ss_pred HHHHH--H-hhcccCceeEEEeccC--CccChhhhHHHHHH
Q 008807 233 WVVEA--T-TKKKLNVLSVHLTSSK--SLAGIVGVASEIQK 268 (553)
Q Consensus 233 ~~~~~--~-~~~~l~~~~vi~iSAk--~g~gi~~Ll~~L~~ 268 (553)
+.... . ...... ...+.+||+ .+.++.++...+..
T Consensus 143 ~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~v~~~~~~~~~ 182 (219)
T COG1100 143 LLVLAPKAVLPEVAN-PALLETSAKSLTGPNVNELFKELLR 182 (219)
T ss_pred hhhhHhHHhhhhhcc-cceeEeecccCCCcCHHHHHHHHHH
Confidence 10000 0 001112 236788888 88888877665543
No 477
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=96.65 E-value=0.0029 Score=62.36 Aligned_cols=22 Identities=32% Similarity=0.723 Sum_probs=20.1
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+++..
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~ 23 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMER 23 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999864
No 478
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.65 E-value=0.004 Score=58.57 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+++++..
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~ 25 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISH 25 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999999864
No 479
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.63 E-value=0.0099 Score=61.41 Aligned_cols=107 Identities=20% Similarity=0.090 Sum_probs=59.7
Q ss_pred cCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCC
Q 008807 144 LSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPK 223 (553)
Q Consensus 144 l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~ 223 (553)
.+....++||+|.. + ..+ .+...+|.++++.+.. . ..-+..+..-+..+|.++|+||+|+.+.
T Consensus 125 ~g~D~viidT~G~~------~----~e~-----~i~~~aD~i~vv~~~~-~-~~el~~~~~~l~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 125 AGYDVIIVETVGVG------Q----SEV-----DIANMADTFVVVTIPG-T-GDDLQGIKAGLMEIADIYVVNKADGEGA 187 (300)
T ss_pred CCCCEEEEeCCCCc------h----hhh-----HHHHhhceEEEEecCC-c-cHHHHHHHHHHhhhccEEEEEcccccch
Confidence 35667899998742 1 011 1244678887775422 1 1122222221236788999999999865
Q ss_pred CCChhhHHHHHH---HHHhhc--ccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 224 GTDFNCVGDWVV---EATTKK--KLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 224 ~~~~~~~~~~~~---~~~~~~--~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.. .......+. ..+... ... ..++.+||+++.|+++|++.|.+.
T Consensus 188 ~~-~~~~~~~~~~~l~~l~~~~~~~~-~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 188 TN-VTIARLMLALALEEIRRREDGWR-PPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred hH-HHHHHHHHHHHHhhccccccCCC-CCEEEEEccCCCCHHHHHHHHHHH
Confidence 42 111111110 011111 111 358999999999999999998765
No 480
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.63 E-value=0.0033 Score=61.02 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.8
Q ss_pred cceEEeccCCCChhHHHHHHHhhh
Q 008807 273 RDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
.+++++|.+|||||||+|+|.+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 479999999999999999999763
No 481
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.63 E-value=0.0029 Score=73.19 Aligned_cols=60 Identities=23% Similarity=0.274 Sum_probs=38.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEE--EEeecCCcEEEEcCCccCC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQ--IDAFLGGGKLYDTPGVHLH 344 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~--i~~~~~~~~liDTPGi~~~ 344 (553)
+.-.+.++|.+|+|||||+|+|+.... ..+..+|+|.+.-. +..-.....|+||||....
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v--------------~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F 350 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNV--------------AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAF 350 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc--------------cccccCceeeeccEEEEEECCEEEEEEECCCCccc
Confidence 344899999999999999999986421 12234566664322 2211123469999996543
No 482
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.61 E-value=0.0041 Score=59.40 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||++++...
T Consensus 2 kivivG~~~vGKTsli~~~~~~ 23 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRG 23 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 483
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.61 E-value=0.0026 Score=72.97 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=37.2
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecE--EEEeec----CCcEEEEcCCcc
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPI--QIDAFL----GGGKLYDTPGVH 342 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i--~i~~~~----~~~~liDTPGi~ 342 (553)
+...+.++|.+|+|||||+|+|+..... .+..+|+|.+.- .+.... ....++||||..
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~--------------~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIA--------------QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCc--------------cccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 3458999999999999999999864211 223456665421 111111 134699999964
No 484
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.018 Score=60.92 Aligned_cols=106 Identities=18% Similarity=0.157 Sum_probs=62.1
Q ss_pred cCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-------hhhH---HHHHHHhCCCCEEE
Q 008807 144 LSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-------GSFL---ARIRDLAGANPIIL 213 (553)
Q Consensus 144 l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-------~s~~---~~l~~~~~~~pvIl 213 (553)
.+..+.++|++|.. +.+.+++.- ...||+-|+|||+++.+ +... -.|....+-..+|+
T Consensus 83 ~k~~~tIiDaPGHr-----------dFvknmItG-asqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIV 150 (428)
T COG5256 83 DKYNFTIIDAPGHR-----------DFVKNMITG-ASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIV 150 (428)
T ss_pred CCceEEEeeCCchH-----------HHHHHhhcc-hhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEE
Confidence 44457899998742 333344444 34889999999998752 1111 11223346678999
Q ss_pred EEEcccCCCCCCC-hhhHHHHHHHHHhhcccCc--eeEEEeccCCccChhh
Q 008807 214 VVTKVDLLPKGTD-FNCVGDWVVEATTKKKLNV--LSVHLTSSKSLAGIVG 261 (553)
Q Consensus 214 VlNKiDLl~~~~~-~~~~~~~~~~~~~~~~l~~--~~vi~iSAk~g~gi~~ 261 (553)
++||+|+.+-++. .+.+..-+......-++.. ...+++||.+|.|+.+
T Consensus 151 avNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 151 AVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 9999999875421 1222222222111122221 3478999999999865
No 485
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.58 E-value=0.0074 Score=46.18 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=26.4
Q ss_pred hhcccEEEEEcccCCCC-------hhhHHHHHHHhCCCCEEEEEEccc
Q 008807 179 RREKALIVKLVDIVDFN-------GSFLARIRDLAGANPIILVVTKVD 219 (553)
Q Consensus 179 ~~~adlIl~VVD~~d~~-------~s~~~~l~~~~~~~pvIlVlNKiD 219 (553)
..=+++|++++|.+.-- ..+..+++....++|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 34578999999998532 344556666667899999999998
No 486
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.061 Score=52.17 Aligned_cols=109 Identities=23% Similarity=0.195 Sum_probs=65.3
Q ss_pred cccccCCCcccccCccccccCC-CCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSES-DAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~-~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
..|-.+|.+.+|+.++|=..-. ...|-+.. . .+-|.-.........++|.||. ..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS-----i-------epn~a~~r~gs~~~~LVD~PGH------------~r 94 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS-----I-------EPNEATYRLGSENVTLVDLPGH------------SR 94 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeee-----e-------ccceeeEeecCcceEEEeCCCc------------HH
Confidence 5788889999999988743322 11221111 1 2333433333333478898774 35
Q ss_pred HHHHHHHhhh---cccEEEEEcccCCCChhh------HHHH-HHH---hCCCCEEEEEEcccCCCCC
Q 008807 171 LREKLSHLRR---EKALIVKLVDIVDFNGSF------LARI-RDL---AGANPIILVVTKVDLLPKG 224 (553)
Q Consensus 171 ~~~~l~~~~~---~adlIl~VVD~~d~~~s~------~~~l-~~~---~~~~pvIlVlNKiDLl~~~ 224 (553)
.+..+.+... .+-.||+|||...+.... +-.+ .+. ....|+++..||.|+....
T Consensus 95 lR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 95 LRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred HHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 5666666555 688999999988665322 2111 111 1346799999999998665
No 487
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.57 E-value=0.0019 Score=63.68 Aligned_cols=72 Identities=25% Similarity=0.200 Sum_probs=44.4
Q ss_pred cCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe--ec
Q 008807 253 SKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA--FL 330 (553)
Q Consensus 253 Ak~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~--~~ 330 (553)
.-+|.|++-+.+ ..-+++++|.|.||||||+..+...... .+.+--||+-.|.-.+ ..
T Consensus 49 ~~kg~GFeV~Ks------GdaRValIGfPSVGKStlLs~iT~T~Se--------------aA~yeFTTLtcIpGvi~y~g 108 (364)
T KOG1486|consen 49 SGKGEGFEVLKS------GDARVALIGFPSVGKSTLLSKITSTHSE--------------AASYEFTTLTCIPGVIHYNG 108 (364)
T ss_pred CCCCCCeeeecc------CCeEEEEecCCCccHHHHHHHhhcchhh--------------hhceeeeEEEeecceEEecC
Confidence 335677653211 2238999999999999999999865211 1122336664333222 22
Q ss_pred CCcEEEEcCCccCC
Q 008807 331 GGGKLYDTPGVHLH 344 (553)
Q Consensus 331 ~~~~liDTPGi~~~ 344 (553)
.+..+.|.|||...
T Consensus 109 a~IQllDLPGIieG 122 (364)
T KOG1486|consen 109 ANIQLLDLPGIIEG 122 (364)
T ss_pred ceEEEecCcccccc
Confidence 34579999999854
No 488
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.0099 Score=54.28 Aligned_cols=96 Identities=22% Similarity=0.206 Sum_probs=63.6
Q ss_pred cEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC-CCCEEEEEEcccCC
Q 008807 148 HMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG-ANPIILVVTKVDLL 221 (553)
Q Consensus 148 ~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~-~~pvIlVlNKiDLl 221 (553)
..+.||+| .+.|++........|.-.++|.|++.-+ .+|+...+.++. +.-+|++.||.||-
T Consensus 60 LQIWDTAG------------QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 60 LQIWDTAG------------QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred EEEeeccc------------HHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 35788876 6899999999888999999999997532 345555555543 34578889999997
Q ss_pred CCCCC-hhhHHHHHHHHHhhcccCceeEEEeccCCccChhhh
Q 008807 222 PKGTD-FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGV 262 (553)
Q Consensus 222 ~~~~~-~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~L 262 (553)
+.... .....++. .... .-.+.+||++|.++++-
T Consensus 128 ~~R~VtflEAs~Fa----qEne---l~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 128 PEREVTFLEASRFA----QENE---LMFLETSALTGENVEEA 162 (214)
T ss_pred hhhhhhHHHHHhhh----cccc---eeeeeecccccccHHHH
Confidence 65421 11111121 1111 23567899999999864
No 489
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.55 E-value=0.004 Score=70.12 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=35.6
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGV 341 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi 341 (553)
.+.++|.+|+|||||+|+|.+...... .....+|+|.+.....+..+ ...++||||.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~-----------~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh 60 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRL-----------PEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH 60 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCC-----------hhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence 578999999999999999986421110 01123677876322111112 2359999995
No 490
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.55 E-value=0.0058 Score=57.69 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||++++...
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~ 24 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTN 24 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 491
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.54 E-value=0.0013 Score=57.32 Aligned_cols=107 Identities=16% Similarity=0.144 Sum_probs=54.6
Q ss_pred cccCCCcccccCccccccCCCCCc-ccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHHH
Q 008807 94 VNSAVASCYGCGAPLQTSESDAPG-YVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 94 ~~~~~~~C~GCG~~LQ~~d~~~~G-Y~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
+..+|...+|+++++++.-....- ......+. ............. ....+.|++|. +.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~g~------------~~ 62 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETS-------EITIGVDVIVVDGDRQSLQFWDFGGQ------------EE 62 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--------SST-------TSCEEEEEEEETTEEEEEEEEEESSS------------HC
T ss_pred EEEECcCCCCHHHHHHHHhcCCCcccccccccC-------CCcEEEEEEEecCCceEEEEEecCcc------------ce
Confidence 456788899999999865532211 00000000 0012212222211 12456788653 12
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCC-hh----hHHHHHHH---hCCCCEEEEEEccc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFN-GS----FLARIRDL---AGANPIILVVTKVD 219 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~-~s----~~~~l~~~---~~~~pvIlVlNKiD 219 (553)
+..........+|++++|+|+++.. .. +...+..+ ..+.|+++|.||.|
T Consensus 63 ~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 63 FYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 2222222256899999999999854 11 11122222 24689999999998
No 492
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.53 E-value=0.002 Score=72.44 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
-.+.++|.+|+|||||+|+|++.
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~ 29 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGT 29 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999999865
No 493
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.52 E-value=0.0041 Score=61.49 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..+.++|.+|+|||||+|+|++.
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999875
No 494
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=96.52 E-value=0.0028 Score=59.76 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=20.1
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+||||||||.+++..
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~ 24 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTN 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 495
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.51 E-value=0.0043 Score=61.30 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=21.6
Q ss_pred cceEEeccCCCChhHHHHHHHhhh
Q 008807 273 RDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
+++.++|..+.|||||+++|+...
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~ 24 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASA 24 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999764
No 496
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=96.48 E-value=0.0048 Score=66.92 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=42.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhh-----hhh-hhcC-----------CccCCCCCceeecEEEEeecCC-
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAA-----AMA-QKYR-----------PIQSAVPGTTLGPIQIDAFLGG- 332 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~-----~~~-~~~~-----------~~~S~~PGTT~~~i~i~~~~~~- 332 (553)
+..++.++|.+|+|||||+++|+.....-.... ..+ ..++ .......|+|.+.....+..++
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 345899999999999999999997543211100 000 0000 0011246899876554433233
Q ss_pred -cEEEEcCCcc
Q 008807 333 -GKLYDTPGVH 342 (553)
Q Consensus 333 -~~liDTPGi~ 342 (553)
..|+||||..
T Consensus 86 ~i~iiDtpGh~ 96 (426)
T TIGR00483 86 EVTIVDCPGHR 96 (426)
T ss_pred EEEEEECCCHH
Confidence 3589999953
No 497
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.48 E-value=0.0075 Score=58.52 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=50.1
Q ss_pred ccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCC-CCChhhHHHHHHHHHhhcccCceeEEEeccCCccChh
Q 008807 182 KALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPK-GTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIV 260 (553)
Q Consensus 182 adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~-~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~ 260 (553)
+|.++.|+|+.+.+.... .....+. ..-++|+||+|+.+. ......+.+++... . ....++.+||++|.|++
T Consensus 113 ~~~~i~vvD~~~~~~~~~-~~~~qi~-~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~----~-~~~~i~~~Sa~~g~gi~ 185 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR-KGGPGIT-RSDLLVINKIDLAPMVGADLGVMERDAKKM----R-GEKPFIFTNLKTKEGLD 185 (199)
T ss_pred hCcEEEEEEcchhhhhhh-hhHhHhh-hccEEEEEhhhccccccccHHHHHHHHHHh----C-CCCCEEEEECCCCCCHH
Confidence 467899999986544211 1111111 112789999999853 22233334443211 1 22568999999999999
Q ss_pred hhHHHHHHh
Q 008807 261 GVASEIQKE 269 (553)
Q Consensus 261 ~Ll~~L~~~ 269 (553)
++++.|.+.
T Consensus 186 el~~~i~~~ 194 (199)
T TIGR00101 186 TVIDWIEHY 194 (199)
T ss_pred HHHHHHHhh
Confidence 999998764
No 498
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=96.46 E-value=0.0052 Score=61.68 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.1
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||||+++..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~ 23 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGG 23 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 499
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.0089 Score=55.89 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=66.9
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHH--HHhCCCCEEEEEEcc
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIR--DLAGANPIILVVTKV 218 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~--~~~~~~pvIlVlNKi 218 (553)
....|+|.+| .+..++.-.....+++.|++++|+.|.+ .+..+.+. +.+.+.|+++.+||-
T Consensus 69 ~~l~fwdlgG------------Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankq 136 (197)
T KOG0076|consen 69 APLSFWDLGG------------QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQ 136 (197)
T ss_pred ceeEEEEcCC------------hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchh
Confidence 3456788765 3445555555667899999999999843 11111111 123578999999999
Q ss_pred cCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 219 DLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 219 DLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
|+-... ....+...+- ....-.-....+.+|||.+|.|+++=++.+.+.
T Consensus 137 d~q~~~-~~~El~~~~~-~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~ 185 (197)
T KOG0076|consen 137 DLQNAM-EAAELDGVFG-LAELIPRRDNPFQPVSALTGEGVKEGIEWLVKK 185 (197)
T ss_pred hhhhhh-hHHHHHHHhh-hhhhcCCccCccccchhhhcccHHHHHHHHHHH
Confidence 986543 2333333321 111111122457889999999998877766543
No 500
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.36 E-value=0.0062 Score=65.66 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.3
Q ss_pred ceEEeccCCCChhHHHHHHHhhhC
Q 008807 274 DVYILGSANVGKSAFINALLKKMG 297 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~ 297 (553)
+++++|.+|+|||||+++|+....
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g 25 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTK 25 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcC
Confidence 589999999999999999987643
Done!