Query 008807
Match_columns 553
No_of_seqs 485 out of 2954
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ec1_A YQEH GTPase; atnos1, at 100.0 2.3E-63 7.9E-68 523.7 28.1 365 99-526 5-369 (369)
2 3h2y_A GTPase family protein; 100.0 1.3E-62 4.5E-67 517.6 25.5 364 99-526 5-368 (368)
3 1puj_A YLQF, conserved hypothe 99.9 1E-22 3.5E-27 206.3 13.1 155 168-345 11-179 (282)
4 2hjg_A GTP-binding protein ENG 99.9 4.3E-22 1.5E-26 213.8 10.2 220 92-345 4-237 (436)
5 1mky_A Probable GTP-binding pr 99.8 2.6E-21 8.8E-26 207.9 12.1 220 93-344 3-241 (439)
6 4dcu_A GTP-binding protein ENG 99.8 9E-21 3.1E-25 204.6 11.3 221 91-345 23-257 (456)
7 3cnl_A YLQF, putative uncharac 99.8 4.9E-21 1.7E-25 192.0 6.0 145 174-345 14-158 (262)
8 1t9h_A YLOQ, probable GTPase E 99.8 8.5E-20 2.9E-24 186.5 4.8 192 178-388 83-281 (307)
9 2yv5_A YJEQ protein; hydrolase 99.7 3.1E-18 1.1E-22 175.1 11.9 190 178-388 76-272 (302)
10 2qtf_A Protein HFLX, GTP-bindi 99.7 2.8E-17 9.4E-22 172.2 14.0 219 30-270 114-352 (364)
11 1u0l_A Probable GTPase ENGC; p 99.7 4.3E-17 1.5E-21 166.5 11.6 189 178-386 81-274 (301)
12 2rcn_A Probable GTPase ENGC; Y 99.7 4.2E-17 1.4E-21 169.7 10.1 192 176-387 125-324 (358)
13 3gee_A MNME, tRNA modification 99.2 2.4E-11 8.3E-16 131.3 12.1 185 66-271 208-397 (476)
14 1xzp_A Probable tRNA modificat 99.2 1.8E-11 6.2E-16 132.5 10.8 161 89-269 241-402 (482)
15 1x3s_A RAS-related protein RAB 99.2 3.3E-11 1.1E-15 112.8 6.8 170 89-287 13-194 (195)
16 3iev_A GTP-binding protein ERA 99.1 1.6E-10 5.4E-15 118.1 11.4 165 93-272 12-182 (308)
17 1wf3_A GTP-binding protein; GT 99.1 1.4E-10 4.7E-15 118.2 8.9 162 91-271 7-172 (301)
18 3geh_A MNME, tRNA modification 99.1 5.6E-11 1.9E-15 128.0 4.2 161 89-271 222-383 (462)
19 3t5g_A GTP-binding protein RHE 99.0 6.3E-10 2.2E-14 103.0 8.6 166 90-287 5-180 (181)
20 4dhe_A Probable GTP-binding pr 99.0 1.8E-09 6.2E-14 103.6 11.9 172 90-271 28-210 (223)
21 2dyk_A GTP-binding protein; GT 99.0 1.4E-09 4.7E-14 98.3 8.9 155 93-269 3-159 (161)
22 2gj8_A MNME, tRNA modification 98.9 1.5E-09 5.1E-14 100.6 8.4 154 92-270 5-164 (172)
23 2e87_A Hypothetical protein PH 98.9 7.4E-09 2.5E-13 107.8 14.3 162 90-270 166-334 (357)
24 3tkl_A RAS-related protein RAB 98.9 2.2E-09 7.6E-14 100.4 9.4 170 89-287 14-194 (196)
25 4bas_A ADP-ribosylation factor 98.9 6.3E-09 2.1E-13 97.6 10.3 158 90-270 16-187 (199)
26 3tw8_B RAS-related protein RAB 98.9 2.1E-09 7.3E-14 98.8 6.7 153 88-269 6-168 (181)
27 2qu8_A Putative nucleolar GTP- 98.9 2E-08 6.8E-13 97.2 13.8 169 90-270 28-203 (228)
28 1mky_A Probable GTP-binding pr 98.9 2.3E-09 7.7E-14 114.8 7.7 189 90-295 179-371 (439)
29 3cph_A RAS-related protein SEC 98.9 2.1E-09 7.1E-14 102.2 6.3 153 89-270 18-180 (213)
30 1zd9_A ADP-ribosylation factor 98.9 1.3E-08 4.5E-13 95.1 11.6 153 89-270 20-183 (188)
31 1ksh_A ARF-like protein 2; sma 98.9 9E-09 3.1E-13 95.7 10.3 155 90-271 17-179 (186)
32 3pqc_A Probable GTP-binding pr 98.8 1.5E-08 5E-13 94.4 11.6 166 90-270 22-192 (195)
33 1upt_A ARL1, ADP-ribosylation 98.8 3.2E-09 1.1E-13 96.9 6.9 154 90-270 6-167 (171)
34 1u8z_A RAS-related protein RAL 98.8 1.6E-08 5.6E-13 91.3 11.5 148 92-269 5-164 (168)
35 2h57_A ADP-ribosylation factor 98.8 6.9E-09 2.4E-13 97.1 9.0 155 90-270 20-185 (190)
36 3reg_A RHO-like small GTPase; 98.8 2.9E-09 1E-13 100.0 5.9 153 89-270 21-186 (194)
37 3i8s_A Ferrous iron transport 98.8 1.6E-09 5.4E-14 108.8 4.2 161 92-272 4-169 (274)
38 2bov_A RAla, RAS-related prote 98.8 9.4E-09 3.2E-13 96.9 9.2 151 89-269 12-174 (206)
39 3iby_A Ferrous iron transport 98.8 3E-09 1E-13 105.7 5.9 158 93-269 3-164 (256)
40 1zj6_A ADP-ribosylation factor 98.8 8.4E-09 2.9E-13 96.2 8.6 155 89-270 14-176 (187)
41 1wms_A RAB-9, RAB9, RAS-relate 98.8 1.7E-08 6E-13 92.5 10.6 152 90-269 6-171 (177)
42 1r8s_A ADP-ribosylation factor 98.8 1.3E-08 4.6E-13 92.1 9.6 149 93-270 2-160 (164)
43 4gzl_A RAS-related C3 botulinu 98.8 3.3E-09 1.1E-13 100.9 5.7 152 89-268 28-201 (204)
44 1f6b_A SAR1; gtpases, N-termin 98.8 4.8E-09 1.6E-13 99.4 6.5 153 92-268 26-195 (198)
45 4dcu_A GTP-binding protein ENG 98.8 1.1E-08 3.8E-13 110.0 10.2 188 90-295 194-385 (456)
46 2a9k_A RAS-related protein RAL 98.8 9.3E-09 3.2E-13 95.0 8.2 151 91-269 18-178 (187)
47 2g6b_A RAS-related protein RAB 98.8 1.3E-08 4.6E-13 93.6 9.1 153 90-270 9-172 (180)
48 2hjg_A GTP-binding protein ENG 98.8 1.3E-08 4.3E-13 108.9 10.1 188 90-295 174-365 (436)
49 1ega_A Protein (GTP-binding pr 98.8 1.7E-09 6E-14 110.0 3.3 164 92-271 9-174 (301)
50 1fzq_A ADP-ribosylation factor 98.8 2.5E-08 8.4E-13 92.9 10.9 153 90-270 15-176 (181)
51 2erx_A GTP-binding protein DI- 98.8 1.8E-08 6.3E-13 91.5 9.7 151 92-272 4-167 (172)
52 1kao_A RAP2A; GTP-binding prot 98.8 1.5E-08 5.2E-13 91.4 9.1 148 92-269 4-163 (167)
53 2j1l_A RHO-related GTP-binding 98.8 1.3E-08 4.4E-13 97.6 9.0 151 90-269 33-206 (214)
54 2b6h_A ADP-ribosylation factor 98.8 1.8E-08 6E-13 94.9 9.7 152 90-270 28-189 (192)
55 1svi_A GTP-binding protein YSX 98.8 2.9E-08 9.9E-13 92.8 11.2 165 90-270 22-193 (195)
56 1ek0_A Protein (GTP-binding pr 98.8 1.4E-08 4.9E-13 92.1 8.8 154 92-270 4-167 (170)
57 3q72_A GTP-binding protein RAD 98.8 1.8E-08 6.1E-13 91.5 9.4 149 93-270 4-162 (166)
58 2fu5_C RAS-related protein RAB 98.8 2.7E-08 9.2E-13 92.0 10.7 152 90-268 7-167 (183)
59 2hup_A RAS-related protein RAB 98.8 1.4E-08 4.6E-13 96.4 8.4 155 89-269 27-190 (201)
60 2fh5_B SR-beta, signal recogni 98.8 3.1E-08 1.1E-12 94.4 10.9 156 89-268 5-212 (214)
61 1moz_A ARL1, ADP-ribosylation 98.8 1E-08 3.4E-13 94.8 7.3 154 89-270 16-178 (183)
62 4dsu_A GTPase KRAS, isoform 2B 98.8 1.2E-08 4.1E-13 94.5 7.8 151 91-269 4-163 (189)
63 3t1o_A Gliding protein MGLA; G 98.8 1.8E-08 6E-13 94.0 8.8 158 89-269 12-189 (198)
64 2gf0_A GTP-binding protein DI- 98.8 2.8E-08 9.5E-13 93.1 10.2 154 89-272 6-171 (199)
65 3con_A GTPase NRAS; structural 98.8 3.8E-08 1.3E-12 91.7 11.1 151 91-269 21-180 (190)
66 2y8e_A RAB-protein 6, GH09086P 98.8 1.6E-08 5.6E-13 92.6 8.4 151 91-270 14-175 (179)
67 2wji_A Ferrous iron transport 98.7 1.4E-08 4.9E-13 92.9 7.8 156 92-270 4-163 (165)
68 3bc1_A RAS-related protein RAB 98.7 3.4E-08 1.2E-12 91.7 10.4 152 89-269 9-182 (195)
69 3dz8_A RAS-related protein RAB 98.7 1.3E-08 4.6E-13 95.2 7.7 152 89-269 21-183 (191)
70 2yc2_C IFT27, small RAB-relate 98.7 1.8E-08 6.3E-13 94.9 8.6 155 90-269 19-189 (208)
71 2q3h_A RAS homolog gene family 98.7 2.4E-08 8.2E-13 94.1 9.3 153 90-269 19-192 (201)
72 1zbd_A Rabphilin-3A; G protein 98.7 4.2E-08 1.4E-12 92.5 10.9 149 91-268 8-167 (203)
73 2wkq_A NPH1-1, RAS-related C3 98.7 2.3E-08 7.7E-13 101.7 9.7 154 88-269 152-327 (332)
74 2h17_A ADP-ribosylation factor 98.7 8.4E-09 2.9E-13 95.8 5.9 152 90-268 20-179 (181)
75 2il1_A RAB12; G-protein, GDP, 98.7 3E-08 1E-12 93.1 9.7 153 89-269 24-187 (192)
76 1mh1_A RAC1; GTP-binding, GTPa 98.7 1.3E-08 4.4E-13 94.1 6.9 151 91-270 5-178 (186)
77 1vg8_A RAS-related protein RAB 98.7 5.9E-08 2E-12 91.6 11.5 153 89-269 6-172 (207)
78 3a1s_A Iron(II) transport prot 98.7 2.6E-08 8.9E-13 99.0 9.4 158 91-270 5-165 (258)
79 2x77_A ADP-ribosylation factor 98.7 6.4E-08 2.2E-12 90.2 11.5 154 90-270 21-182 (189)
80 3q85_A GTP-binding protein REM 98.7 3.1E-08 1.1E-12 90.1 9.1 150 93-270 4-165 (169)
81 3clv_A RAB5 protein, putative; 98.7 1.6E-08 5.6E-13 94.4 7.3 103 147-269 94-201 (208)
82 1z2a_A RAS-related protein RAB 98.7 2.6E-08 8.9E-13 90.3 8.3 150 91-269 5-164 (168)
83 4a9a_A Ribosome-interacting GT 98.7 7E-09 2.4E-13 108.5 5.0 57 274-344 74-132 (376)
84 1z0j_A RAB-22, RAS-related pro 98.7 1.8E-08 6.1E-13 91.6 7.1 151 90-269 5-166 (170)
85 1c1y_A RAS-related protein RAP 98.7 3.3E-08 1.1E-12 89.5 8.8 149 92-269 4-164 (167)
86 4djt_A GTP-binding nuclear pro 98.7 3.7E-08 1.3E-12 94.1 9.6 154 89-270 9-173 (218)
87 1ky3_A GTP-binding protein YPT 98.7 3.2E-08 1.1E-12 90.9 8.8 153 89-269 6-175 (182)
88 2hxs_A RAB-26, RAS-related pro 98.7 1.1E-08 3.7E-13 94.0 5.5 154 90-270 5-171 (178)
89 1z0f_A RAB14, member RAS oncog 98.7 5.8E-08 2E-12 88.9 10.4 152 89-269 13-175 (179)
90 2atx_A Small GTP binding prote 98.7 7.4E-09 2.5E-13 97.0 4.3 151 90-269 17-190 (194)
91 1m2o_B GTP-binding protein SAR 98.7 2E-08 6.9E-13 94.4 7.2 148 92-268 24-188 (190)
92 2f7s_A C25KG, RAS-related prot 98.7 3E-08 1E-12 94.7 8.5 153 89-268 23-195 (217)
93 2nzj_A GTP-binding protein REM 98.7 8.2E-08 2.8E-12 87.7 11.1 151 91-269 4-166 (175)
94 1z08_A RAS-related protein RAB 98.7 3.9E-08 1.3E-12 89.4 8.7 151 90-269 5-166 (170)
95 3q3j_B RHO-related GTP-binding 98.7 1.8E-08 6.2E-13 96.7 6.7 151 90-269 26-200 (214)
96 2ce2_X GTPase HRAS; signaling 98.7 5.1E-08 1.7E-12 87.7 9.3 149 93-269 5-162 (166)
97 1z06_A RAS-related protein RAB 98.7 7.9E-08 2.7E-12 89.7 10.9 150 90-268 19-184 (189)
98 2fg5_A RAB-22B, RAS-related pr 98.7 1.1E-08 3.8E-13 96.0 5.0 153 89-270 21-184 (192)
99 2e87_A Hypothetical protein PH 98.7 3.9E-10 1.3E-14 117.5 -5.7 57 273-343 168-226 (357)
100 2bme_A RAB4A, RAS-related prot 98.7 4.9E-08 1.7E-12 90.4 9.2 151 89-268 8-169 (186)
101 3kkq_A RAS-related protein M-R 98.7 3.8E-08 1.3E-12 91.0 8.4 151 89-269 16-179 (183)
102 3o47_A ADP-ribosylation factor 98.7 3.3E-08 1.1E-12 101.7 8.8 151 93-271 167-326 (329)
103 1lnz_A SPO0B-associated GTP-bi 98.7 5.5E-09 1.9E-13 108.2 2.9 156 92-271 159-329 (342)
104 1g16_A RAS-related protein SEC 98.7 1.5E-08 5.1E-13 92.1 5.5 150 92-270 4-163 (170)
105 3lvq_E ARF-GAP with SH3 domain 98.7 1.4E-08 4.8E-13 110.1 6.2 153 90-270 321-482 (497)
106 3k53_A Ferrous iron transport 98.7 1.6E-08 5.5E-13 100.9 6.1 158 92-271 4-165 (271)
107 2ew1_A RAS-related protein RAB 98.7 5.5E-08 1.9E-12 92.5 9.3 152 89-269 24-186 (201)
108 3qq5_A Small GTP-binding prote 98.7 5.2E-08 1.8E-12 103.6 10.0 158 90-270 33-194 (423)
109 3bwd_D RAC-like GTP-binding pr 98.6 2.8E-09 9.4E-14 98.4 -0.3 152 91-269 8-178 (182)
110 3cbq_A GTP-binding protein REM 98.6 1.2E-07 4.2E-12 89.5 11.1 154 89-270 21-186 (195)
111 1r2q_A RAS-related protein RAB 98.6 5.5E-08 1.9E-12 88.1 8.3 152 90-270 5-167 (170)
112 1kk1_A EIF2gamma; initiation o 98.6 6E-08 2.1E-12 102.8 9.9 167 86-270 5-198 (410)
113 2o52_A RAS-related protein RAB 98.6 4.5E-08 1.5E-12 92.6 7.9 152 88-268 22-184 (200)
114 2fn4_A P23, RAS-related protei 98.6 2.7E-08 9.4E-13 91.3 6.1 152 90-269 8-169 (181)
115 3sjy_A Translation initiation 98.6 1.1E-08 3.9E-13 108.1 3.9 170 88-270 5-190 (403)
116 3b1v_A Ferrous iron uptake tra 98.6 3.4E-08 1.2E-12 99.0 7.1 155 92-270 4-162 (272)
117 2gco_A H9, RHO-related GTP-bin 98.6 4.5E-08 1.5E-12 92.6 7.6 149 92-269 26-197 (201)
118 2efe_B Small GTP-binding prote 98.6 5.9E-08 2E-12 89.3 8.2 152 90-270 11-173 (181)
119 3gj0_A GTP-binding nuclear pro 98.6 6.5E-09 2.2E-13 99.9 1.6 152 89-270 13-173 (221)
120 2gf9_A RAS-related protein RAB 98.6 1.5E-07 5E-12 87.8 10.9 152 89-269 20-182 (189)
121 3th5_A RAS-related C3 botulinu 98.1 4.1E-09 1.4E-13 99.9 0.0 158 90-268 29-201 (204)
122 2p5s_A RAS and EF-hand domain 98.6 4.1E-08 1.4E-12 92.7 6.7 152 90-270 27-195 (199)
123 2bcg_Y Protein YP2, GTP-bindin 98.6 2.5E-07 8.5E-12 87.5 12.1 151 90-269 7-168 (206)
124 2fv8_A H6, RHO-related GTP-bin 98.6 2.7E-08 9.1E-13 94.6 5.2 151 92-269 26-197 (207)
125 4a9a_A Ribosome-interacting GT 98.6 3.3E-08 1.1E-12 103.4 6.3 116 92-220 73-194 (376)
126 1wf3_A GTP-binding protein; GT 98.6 5.6E-08 1.9E-12 98.9 7.3 59 273-344 8-68 (301)
127 3j2k_7 ERF3, eukaryotic polype 98.6 1.5E-07 5.3E-12 100.6 11.0 163 90-265 16-218 (439)
128 2a5j_A RAS-related protein RAB 98.6 1E-07 3.5E-12 89.1 8.2 151 90-269 20-181 (191)
129 2j0v_A RAC-like GTP-binding pr 98.6 5.7E-08 2E-12 92.4 6.4 150 91-269 9-177 (212)
130 3l0i_B RAS-related protein RAB 98.6 6E-08 2E-12 91.5 6.4 155 89-270 31-194 (199)
131 2wjg_A FEOB, ferrous iron tran 98.6 8.8E-08 3E-12 88.9 7.4 159 92-272 8-169 (188)
132 2oil_A CATX-8, RAS-related pro 98.6 1.1E-07 3.8E-12 88.9 8.0 153 88-269 22-185 (193)
133 2lkc_A Translation initiation 98.5 2.7E-07 9.2E-12 84.6 10.2 157 89-269 6-168 (178)
134 2atv_A RERG, RAS-like estrogen 98.5 4.6E-07 1.6E-11 85.0 11.6 148 91-269 28-188 (196)
135 4dkx_A RAS-related protein RAB 98.5 1.8E-07 6.1E-12 90.5 8.9 150 92-270 14-174 (216)
136 3ihw_A Centg3; RAS, centaurin, 98.5 3.3E-07 1.1E-11 85.5 10.5 146 89-269 18-177 (184)
137 1xzp_A Probable tRNA modificat 98.5 4.6E-08 1.6E-12 105.8 4.9 58 272-342 243-302 (482)
138 2iwr_A Centaurin gamma 1; ANK 98.5 7.1E-07 2.4E-11 81.9 12.2 144 91-268 7-165 (178)
139 1m7b_A RND3/RHOE small GTP-bin 98.5 7.8E-08 2.7E-12 89.4 5.5 151 90-269 6-180 (184)
140 3iev_A GTP-binding protein ERA 98.5 1.2E-07 4.2E-12 96.6 7.4 60 273-345 11-73 (308)
141 2g3y_A GTP-binding protein GEM 98.5 3.2E-07 1.1E-11 88.3 9.8 154 91-269 37-200 (211)
142 1s0u_A EIF-2-gamma, translatio 98.5 3.5E-07 1.2E-11 96.8 10.9 112 146-270 81-196 (408)
143 1gwn_A RHO-related GTP-binding 98.5 9E-08 3.1E-12 91.3 5.4 151 90-269 27-201 (205)
144 3oes_A GTPase rhebl1; small GT 98.5 1.9E-07 6.6E-12 88.1 7.6 151 90-270 23-185 (201)
145 3c5c_A RAS-like protein 12; GD 98.5 1.4E-07 4.9E-12 88.1 6.5 149 90-269 20-183 (187)
146 2gj8_A MNME, tRNA modification 98.5 1.8E-07 6E-12 86.4 6.7 59 272-343 4-64 (172)
147 1wb1_A Translation elongation 98.5 1.7E-07 5.9E-12 101.4 7.6 164 91-269 19-186 (482)
148 3cpj_B GTP-binding protein YPT 98.5 7.5E-08 2.6E-12 92.7 4.2 153 89-270 11-174 (223)
149 3tr5_A RF-3, peptide chain rel 98.5 2.7E-07 9.3E-12 100.9 9.0 122 90-223 12-149 (528)
150 3p26_A Elongation factor 1 alp 98.5 2.1E-07 7.2E-12 100.7 7.8 162 90-264 32-230 (483)
151 3zvr_A Dynamin-1; hydrolase, D 98.4 4.8E-07 1.6E-11 102.3 10.3 199 62-268 27-274 (772)
152 3r7w_A Gtpase1, GTP-binding pr 98.4 4.2E-07 1.4E-11 92.5 8.9 160 92-268 4-177 (307)
153 2xtp_A GTPase IMAP family memb 98.4 1.4E-07 4.6E-12 93.2 4.8 170 90-271 21-207 (260)
154 3gee_A MNME, tRNA modification 98.4 1.1E-07 3.7E-12 102.7 4.4 61 271-344 232-294 (476)
155 3llu_A RAS-related GTP-binding 98.4 1.4E-07 4.8E-12 88.8 4.6 162 89-268 18-193 (196)
156 3lxw_A GTPase IMAP family memb 98.4 4.7E-07 1.6E-11 89.2 8.3 172 90-271 20-207 (247)
157 3izq_1 HBS1P, elongation facto 98.4 1.2E-07 4.1E-12 105.5 4.5 161 90-263 166-363 (611)
158 1h65_A Chloroplast outer envel 98.4 4E-07 1.4E-11 90.7 7.9 60 272-344 39-100 (270)
159 3t5d_A Septin-7; GTP-binding p 98.4 6.3E-07 2.2E-11 89.5 9.2 176 91-280 8-209 (274)
160 3iby_A Ferrous iron transport 98.4 2.3E-07 8E-12 92.0 5.9 57 274-344 3-61 (256)
161 2c78_A Elongation factor TU-A; 98.4 2.6E-07 8.8E-12 97.7 6.5 158 90-259 10-181 (405)
162 3i8s_A Ferrous iron transport 98.4 2.4E-07 8.3E-12 92.7 5.5 58 273-344 4-63 (274)
163 3lxw_A GTPase IMAP family memb 98.4 3.8E-07 1.3E-11 89.8 6.6 60 272-344 21-83 (247)
164 2cxx_A Probable GTP-binding pr 98.4 6.9E-07 2.4E-11 82.7 7.9 157 93-270 3-182 (190)
165 1ega_A Protein (GTP-binding pr 98.4 2.8E-07 9.5E-12 93.6 5.5 58 272-342 8-67 (301)
166 3lxx_A GTPase IMAP family memb 98.3 1.1E-06 3.8E-11 85.5 9.1 129 89-224 27-161 (239)
167 3geh_A MNME, tRNA modification 98.3 1.7E-07 5.8E-12 100.9 3.5 61 271-344 223-285 (462)
168 2cjw_A GTP-binding protein GEM 98.3 6.2E-07 2.1E-11 84.3 7.0 154 91-269 6-169 (192)
169 3b1v_A Ferrous iron uptake tra 98.3 4.3E-07 1.5E-11 91.0 6.0 57 273-343 4-61 (272)
170 1jwy_B Dynamin A GTPase domain 98.3 7.3E-07 2.5E-11 90.3 7.8 125 145-272 130-262 (315)
171 3def_A T7I23.11 protein; chlor 98.3 7.9E-07 2.7E-11 88.2 7.8 60 272-344 36-97 (262)
172 3dpu_A RAB family protein; roc 98.3 5.8E-07 2E-11 98.5 7.3 156 88-271 38-207 (535)
173 2zej_A Dardarin, leucine-rich 98.3 6.4E-07 2.2E-11 83.3 5.9 159 92-270 3-176 (184)
174 4dhe_A Probable GTP-binding pr 98.3 4.7E-07 1.6E-11 86.6 4.9 61 272-344 29-92 (223)
175 3pqc_A Probable GTP-binding pr 98.3 1.1E-06 3.7E-11 81.6 6.8 57 273-343 24-80 (195)
176 1svi_A GTP-binding protein YSX 98.3 7E-07 2.4E-11 83.2 5.5 60 272-344 23-82 (195)
177 3a1s_A Iron(II) transport prot 98.3 6.8E-07 2.3E-11 88.7 5.6 58 273-344 6-65 (258)
178 2elf_A Protein translation elo 98.3 1.7E-06 5.7E-11 90.5 8.7 147 93-270 23-178 (370)
179 2cxx_A Probable GTP-binding pr 98.2 8.4E-07 2.9E-11 82.1 5.7 53 274-342 3-55 (190)
180 2wji_A Ferrous iron transport 98.2 1E-06 3.6E-11 80.3 6.0 57 273-343 4-62 (165)
181 2www_A Methylmalonic aciduria 98.2 1.5E-06 5.2E-11 90.1 7.9 109 145-271 166-278 (349)
182 3lxx_A GTPase IMAP family memb 98.2 1.1E-06 3.9E-11 85.5 6.3 59 272-344 29-91 (239)
183 1udx_A The GTP-binding protein 98.2 2.6E-06 8.8E-11 90.3 9.2 157 93-270 159-323 (416)
184 1zun_B Sulfate adenylate trans 98.2 4.7E-06 1.6E-10 88.9 11.0 163 90-264 23-216 (434)
185 1jal_A YCHF protein; nucleotid 98.2 8.4E-07 2.9E-11 92.3 4.8 58 273-344 3-79 (363)
186 3mca_A HBS1, elongation factor 98.2 4.5E-07 1.5E-11 100.6 2.9 159 91-261 177-372 (592)
187 1f5n_A Interferon-induced guan 98.2 8.2E-07 2.8E-11 97.9 4.7 23 273-295 39-61 (592)
188 3k53_A Ferrous iron transport 98.2 1.3E-06 4.3E-11 87.1 5.4 57 273-343 4-62 (271)
189 2xtp_A GTPase IMAP family memb 98.1 2.1E-06 7.3E-11 84.6 6.3 60 272-344 22-84 (260)
190 2qtf_A Protein HFLX, GTP-bindi 98.1 2.4E-06 8.1E-11 89.1 7.0 55 275-343 182-238 (364)
191 1wxq_A GTP-binding protein; st 98.1 9.4E-07 3.2E-11 93.3 4.0 37 274-324 2-38 (397)
192 2wjg_A FEOB, ferrous iron tran 98.1 2E-06 6.9E-11 79.6 5.6 57 273-343 8-66 (188)
193 2dyk_A GTP-binding protein; GT 98.1 2.2E-06 7.4E-11 76.9 5.4 57 274-343 3-61 (161)
194 1d2e_A Elongation factor TU (E 98.1 9.5E-06 3.3E-10 85.4 11.0 103 144-258 64-171 (397)
195 2ohf_A Protein OLA1, GTP-bindi 98.1 2E-06 6.9E-11 90.3 5.7 60 271-344 21-99 (396)
196 3t5d_A Septin-7; GTP-binding p 98.1 1.9E-06 6.5E-11 86.0 5.1 65 273-343 9-77 (274)
197 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 2.5E-06 8.7E-11 89.6 5.9 61 271-344 19-98 (392)
198 1f60_A Elongation factor EEF1A 98.1 8.2E-07 2.8E-11 95.5 1.8 161 91-264 7-204 (458)
199 3cb4_D GTP-binding protein LEP 98.1 1.2E-05 4.1E-10 89.0 11.1 187 91-295 4-216 (599)
200 1pui_A ENGB, probable GTP-bind 98.1 1.7E-06 5.8E-11 81.8 3.5 60 271-343 25-84 (210)
201 1pui_A ENGB, probable GTP-bind 98.1 3.8E-05 1.3E-09 72.3 12.9 165 92-270 27-197 (210)
202 2aka_B Dynamin-1; fusion prote 98.0 3.8E-06 1.3E-10 84.2 6.0 24 273-296 27-50 (299)
203 2ywe_A GTP-binding protein LEP 98.0 1.4E-05 4.7E-10 88.5 10.6 109 146-271 73-183 (600)
204 2qu8_A Putative nucleolar GTP- 98.0 4E-06 1.4E-10 80.8 5.5 57 273-343 30-88 (228)
205 2x2e_A Dynamin-1; nitration, h 98.0 1.4E-05 4.6E-10 82.9 9.8 129 137-268 120-254 (353)
206 2aka_B Dynamin-1; fusion prote 98.0 2.7E-05 9.1E-10 77.9 11.2 121 146-269 125-250 (299)
207 2j69_A Bacterial dynamin-like 98.0 3E-05 1E-09 87.5 12.2 116 146-270 174-323 (695)
208 2x2e_A Dynamin-1; nitration, h 98.0 6.2E-06 2.1E-10 85.4 6.2 24 273-296 32-55 (353)
209 2j69_A Bacterial dynamin-like 98.0 9.3E-06 3.2E-10 91.7 8.0 25 271-295 68-92 (695)
210 3izy_P Translation initiation 98.0 1.7E-06 5.8E-11 94.5 1.9 151 91-269 4-165 (537)
211 1z0j_A RAB-22, RAS-related pro 97.9 8.8E-06 3E-10 73.4 5.8 58 273-342 7-66 (170)
212 1jwy_B Dynamin A GTPase domain 97.9 8.8E-06 3E-10 82.3 6.4 24 274-297 26-49 (315)
213 1lnz_A SPO0B-associated GTP-bi 97.9 3.3E-06 1.1E-10 87.3 2.8 55 274-342 160-217 (342)
214 3q72_A GTP-binding protein RAD 97.9 4.1E-06 1.4E-10 75.6 3.0 56 273-343 3-61 (166)
215 2nzj_A GTP-binding protein REM 97.9 6.8E-06 2.3E-10 74.7 4.5 56 273-342 5-63 (175)
216 3tw8_B RAS-related protein RAB 97.9 1.1E-05 3.9E-10 73.5 5.9 23 273-295 10-32 (181)
217 2dby_A GTP-binding protein; GD 97.9 9.7E-06 3.3E-10 84.6 6.0 35 274-322 3-37 (368)
218 1jny_A EF-1-alpha, elongation 97.9 1.8E-05 6.3E-10 84.3 8.2 113 140-264 78-205 (435)
219 4dsu_A GTPase KRAS, isoform 2B 97.9 1.8E-05 6E-10 72.9 7.0 56 273-343 5-64 (189)
220 2lkc_A Translation initiation 97.9 9.8E-06 3.4E-10 74.0 5.0 57 272-342 8-66 (178)
221 1r5b_A Eukaryotic peptide chai 97.8 1.8E-05 6.3E-10 85.1 7.3 111 141-263 116-243 (467)
222 3r7w_A Gtpase1, GTP-binding pr 97.8 1.2E-05 4.3E-10 81.5 5.6 58 272-342 3-63 (307)
223 3tkl_A RAS-related protein RAB 97.8 2.2E-05 7.7E-10 72.8 6.9 23 273-295 17-39 (196)
224 3p32_A Probable GTPase RV1496/ 97.8 1.1E-05 3.9E-10 83.6 5.2 110 144-271 170-283 (355)
225 1zcb_A G alpha I/13; GTP-bindi 97.8 2E-05 6.8E-10 82.0 6.7 118 139-268 194-349 (362)
226 2ged_A SR-beta, signal recogni 97.8 1.7E-05 5.9E-10 73.6 5.7 55 273-343 49-103 (193)
227 1dar_A EF-G, elongation factor 97.8 4.7E-05 1.6E-09 85.8 10.3 123 89-223 10-144 (691)
228 2erx_A GTP-binding protein DI- 97.8 1.3E-05 4.3E-10 72.4 4.6 23 273-295 4-26 (172)
229 2y8e_A RAB-protein 6, GH09086P 97.8 2.6E-05 9.1E-10 70.9 6.7 23 273-295 15-37 (179)
230 2xex_A Elongation factor G; GT 97.8 4.4E-05 1.5E-09 86.1 9.8 122 90-223 9-142 (693)
231 3avx_A Elongation factor TS, e 97.8 6.1E-05 2.1E-09 88.2 11.0 166 90-269 295-483 (1289)
232 2g6b_A RAS-related protein RAB 97.8 2.7E-05 9.2E-10 71.1 6.6 23 273-295 11-33 (180)
233 1g16_A RAS-related protein SEC 97.8 2E-05 6.7E-10 71.1 5.6 23 273-295 4-26 (170)
234 2www_A Methylmalonic aciduria 97.8 6.4E-06 2.2E-10 85.3 2.5 24 272-295 74-97 (349)
235 1ek0_A Protein (GTP-binding pr 97.8 2.2E-05 7.4E-10 70.7 5.7 57 273-342 4-63 (170)
236 2fg5_A RAB-22B, RAS-related pr 97.8 2.1E-05 7.3E-10 73.3 5.8 59 272-342 23-83 (192)
237 1wxq_A GTP-binding protein; st 97.8 3.5E-06 1.2E-10 88.9 0.4 49 208-264 214-262 (397)
238 1g7s_A Translation initiation 97.8 0.00014 4.6E-09 80.6 13.1 110 148-269 72-215 (594)
239 1kao_A RAP2A; GTP-binding prot 97.8 3.5E-05 1.2E-09 69.0 7.0 23 273-295 4-26 (167)
240 2qpt_A EH domain-containing pr 97.8 1.6E-05 5.5E-10 87.3 5.6 23 273-295 66-88 (550)
241 3cph_A RAS-related protein SEC 97.8 2.6E-05 9E-10 73.5 6.4 24 272-295 20-43 (213)
242 1upt_A ARL1, ADP-ribosylation 97.8 2E-05 6.7E-10 71.3 5.1 24 272-295 7-30 (171)
243 1nrj_B SR-beta, signal recogni 97.8 1.7E-05 5.9E-10 75.3 4.9 147 89-258 10-170 (218)
244 1u8z_A RAS-related protein RAL 97.8 3.9E-05 1.3E-09 68.8 7.0 23 273-295 5-27 (168)
245 1cip_A Protein (guanine nucleo 97.8 1.6E-05 5.5E-10 82.5 5.0 119 139-269 186-341 (353)
246 1m2o_B GTP-binding protein SAR 97.8 2.3E-05 7.8E-10 73.2 5.6 57 272-343 23-79 (190)
247 1zo1_I IF2, translation initia 97.8 5.4E-06 1.8E-10 89.8 1.4 151 90-268 3-163 (501)
248 1wms_A RAB-9, RAB9, RAS-relate 97.8 3.3E-05 1.1E-09 70.3 6.6 23 273-295 8-30 (177)
249 1fzq_A ADP-ribosylation factor 97.8 5.3E-06 1.8E-10 76.9 1.1 55 273-342 17-71 (181)
250 3con_A GTPase NRAS; structural 97.8 3.9E-05 1.3E-09 70.9 7.0 23 273-295 22-44 (190)
251 1r2q_A RAS-related protein RAB 97.7 2.7E-05 9.3E-10 70.1 5.7 57 273-342 7-66 (170)
252 1f6b_A SAR1; gtpases, N-termin 97.7 1.3E-05 4.3E-10 75.6 3.6 58 271-343 24-81 (198)
253 2fn4_A P23, RAS-related protei 97.7 4.9E-05 1.7E-09 69.2 7.4 23 273-295 10-32 (181)
254 1z08_A RAS-related protein RAB 97.7 4.7E-05 1.6E-09 68.7 7.2 23 273-295 7-29 (170)
255 1ksh_A ARF-like protein 2; sma 97.7 2.3E-05 7.7E-10 72.4 5.1 57 271-342 17-73 (186)
256 2rdo_7 EF-G, elongation factor 97.7 0.00015 5E-09 82.0 12.5 123 90-224 9-150 (704)
257 3def_A T7I23.11 protein; chlor 97.7 0.0001 3.6E-09 72.7 10.0 123 90-224 35-167 (262)
258 1zj6_A ADP-ribosylation factor 97.7 2.8E-05 9.5E-10 72.0 5.5 57 272-343 16-72 (187)
259 1z2a_A RAS-related protein RAB 97.7 3.9E-05 1.3E-09 69.0 6.3 23 273-295 6-28 (168)
260 1h65_A Chloroplast outer envel 97.7 8.7E-05 3E-09 73.6 9.4 124 89-224 37-170 (270)
261 3zvr_A Dynamin-1; hydrolase, D 97.7 7.1E-05 2.4E-09 84.7 9.5 49 249-297 16-76 (772)
262 3t34_A Dynamin-related protein 97.7 8.5E-05 2.9E-09 77.0 9.3 114 145-264 135-253 (360)
263 1vg8_A RAS-related protein RAB 97.7 5E-05 1.7E-09 71.1 6.9 24 272-295 8-31 (207)
264 2bov_A RAla, RAS-related prote 97.7 5.1E-05 1.7E-09 71.0 6.9 23 273-295 15-37 (206)
265 2h17_A ADP-ribosylation factor 97.7 1.9E-05 6.3E-10 72.9 3.7 56 272-342 21-76 (181)
266 1yrb_A ATP(GTP)binding protein 97.7 7.9E-05 2.7E-09 73.0 8.5 117 146-270 109-255 (262)
267 3c5h_A Glucocorticoid receptor 97.7 4.3E-05 1.5E-09 75.3 6.6 82 181-269 162-252 (255)
268 2a9k_A RAS-related protein RAL 97.7 5.6E-05 1.9E-09 69.2 6.9 24 272-295 18-41 (187)
269 1c1y_A RAS-related protein RAP 97.7 5.8E-05 2E-09 67.8 6.8 23 273-295 4-26 (167)
270 2gf9_A RAS-related protein RAB 97.7 4.2E-05 1.4E-09 70.9 5.9 58 273-342 23-82 (189)
271 2ce2_X GTPase HRAS; signaling 97.7 6.1E-05 2.1E-09 67.2 6.8 23 273-295 4-26 (166)
272 3p26_A Elongation factor 1 alp 97.7 5E-05 1.7E-09 82.0 7.2 82 262-343 23-123 (483)
273 1z0f_A RAB14, member RAS oncog 97.7 4.6E-05 1.6E-09 69.2 5.9 23 273-295 16-38 (179)
274 3t5g_A GTP-binding protein RHE 97.7 8.2E-05 2.8E-09 68.1 7.6 23 273-295 7-29 (181)
275 2bme_A RAB4A, RAS-related prot 97.7 6.4E-05 2.2E-09 69.0 6.8 23 273-295 11-33 (186)
276 4bas_A ADP-ribosylation factor 97.7 2.8E-05 9.5E-10 72.4 4.3 59 272-343 17-75 (199)
277 1zd9_A ADP-ribosylation factor 97.6 4.1E-05 1.4E-09 71.1 5.4 24 272-295 22-45 (188)
278 3gj0_A GTP-binding nuclear pro 97.6 2.1E-05 7.2E-10 75.1 3.5 58 273-342 16-75 (221)
279 1r8s_A ADP-ribosylation factor 97.6 4.6E-05 1.6E-09 68.4 5.5 22 274-295 2-23 (164)
280 2oil_A CATX-8, RAS-related pro 97.6 6.1E-05 2.1E-09 69.9 6.5 23 273-295 26-48 (193)
281 4gzl_A RAS-related C3 botulinu 97.6 6.6E-05 2.3E-09 70.8 6.7 25 271-295 29-53 (204)
282 2bcg_Y Protein YP2, GTP-bindin 97.6 8E-05 2.7E-09 70.0 7.1 23 273-295 9-31 (206)
283 2fh5_B SR-beta, signal recogni 97.6 5.1E-05 1.8E-09 71.8 5.8 56 272-342 7-65 (214)
284 3clv_A RAB5 protein, putative; 97.6 8.4E-05 2.9E-09 68.8 7.2 23 273-295 8-30 (208)
285 1ky3_A GTP-binding protein YPT 97.6 4.6E-05 1.6E-09 69.4 5.3 23 273-295 9-31 (182)
286 3qq5_A Small GTP-binding prote 97.6 1.4E-05 4.9E-10 84.8 2.0 59 273-344 35-96 (423)
287 1x3s_A RAS-related protein RAB 97.6 5.3E-05 1.8E-09 70.1 5.6 58 272-342 15-75 (195)
288 1z06_A RAS-related protein RAB 97.6 8.4E-05 2.9E-09 68.8 7.0 23 273-295 21-43 (189)
289 1zbd_A Rabphilin-3A; G protein 97.6 5.9E-05 2E-09 70.6 5.8 58 273-343 9-69 (203)
290 2efe_B Small GTP-binding prote 97.6 7.4E-05 2.5E-09 68.2 6.3 23 273-295 13-35 (181)
291 2q3h_A RAS homolog gene family 97.6 8.9E-05 3E-09 69.3 7.0 58 272-344 20-81 (201)
292 2gf0_A GTP-binding protein DI- 97.6 3.6E-05 1.2E-09 71.6 4.2 24 272-295 8-31 (199)
293 3kkq_A RAS-related protein M-R 97.6 8.5E-05 2.9E-09 68.1 6.7 24 272-295 18-41 (183)
294 2f9l_A RAB11B, member RAS onco 97.6 8.1E-05 2.8E-09 69.8 6.6 149 92-269 6-165 (199)
295 2cjw_A GTP-binding protein GEM 97.6 5.9E-05 2E-09 70.6 5.6 23 273-295 7-29 (192)
296 2il1_A RAB12; G-protein, GDP, 97.6 6.1E-05 2.1E-09 70.2 5.5 23 273-295 27-49 (192)
297 2ew1_A RAS-related protein RAB 97.6 9.4E-05 3.2E-09 70.0 6.7 23 273-295 27-49 (201)
298 2fu5_C RAS-related protein RAB 97.6 2.1E-05 7.3E-10 72.2 2.1 23 273-295 9-31 (183)
299 3vqt_A RF-3, peptide chain rel 97.6 0.00034 1.2E-08 76.7 12.0 74 139-224 93-168 (548)
300 3j2k_7 ERF3, eukaryotic polype 97.6 6.4E-05 2.2E-09 80.2 6.0 71 273-343 18-107 (439)
301 2ged_A SR-beta, signal recogni 97.6 9E-05 3.1E-09 68.7 6.3 116 89-224 46-172 (193)
302 1moz_A ARL1, ADP-ribosylation 97.5 3.1E-05 1E-09 71.1 3.0 57 272-343 18-74 (183)
303 2p5s_A RAS and EF-hand domain 97.5 5.3E-05 1.8E-09 71.0 4.6 58 272-342 28-88 (199)
304 2gco_A H9, RHO-related GTP-bin 97.5 8.6E-05 2.9E-09 69.7 6.0 23 273-295 26-48 (201)
305 3bc1_A RAS-related protein RAB 97.5 0.00011 3.8E-09 67.5 6.7 23 273-295 12-34 (195)
306 4djt_A GTP-binding nuclear pro 97.5 3.1E-05 1.1E-09 73.5 2.8 61 272-344 11-74 (218)
307 3oes_A GTPase rhebl1; small GT 97.5 0.00013 4.5E-09 68.3 7.1 24 272-295 24-47 (201)
308 2o52_A RAS-related protein RAB 97.5 6.8E-05 2.3E-09 70.4 5.0 24 272-295 25-48 (200)
309 2x77_A ADP-ribosylation factor 97.5 4.5E-05 1.5E-09 70.6 3.6 24 272-295 22-45 (189)
310 1nrj_B SR-beta, signal recogni 97.5 7.2E-05 2.5E-09 70.9 5.2 55 273-343 13-67 (218)
311 2h57_A ADP-ribosylation factor 97.5 6.7E-05 2.3E-09 69.5 4.8 24 272-295 21-44 (190)
312 1mh1_A RAC1; GTP-binding, GTPa 97.5 0.00012 4.1E-09 66.9 6.5 23 273-295 6-28 (186)
313 3cbq_A GTP-binding protein REM 97.5 5.3E-05 1.8E-09 71.1 4.1 23 273-295 24-46 (195)
314 3izq_1 HBS1P, elongation facto 97.5 2.7E-05 9.2E-10 86.6 2.4 25 271-295 166-190 (611)
315 3c5c_A RAS-like protein 12; GD 97.5 0.00014 4.6E-09 67.6 6.8 24 272-295 21-44 (187)
316 2fv8_A H6, RHO-related GTP-bin 97.5 9.2E-05 3.1E-09 69.9 5.6 23 273-295 26-48 (207)
317 3reg_A RHO-like small GTPase; 97.5 0.00014 4.7E-09 67.6 6.8 25 271-295 22-46 (194)
318 3q85_A GTP-binding protein REM 97.5 4.8E-05 1.6E-09 68.7 3.4 22 274-295 4-25 (169)
319 2p67_A LAO/AO transport system 97.5 5.2E-05 1.8E-09 78.1 4.1 108 145-270 148-259 (341)
320 3dz8_A RAS-related protein RAB 97.5 3.8E-05 1.3E-09 71.4 2.5 58 273-342 24-83 (191)
321 2hxs_A RAB-26, RAS-related pro 97.5 5.8E-05 2E-09 68.7 3.7 23 273-295 7-29 (178)
322 2atx_A Small GTP binding prote 97.5 0.00018 6.2E-09 66.7 7.0 23 273-295 19-41 (194)
323 2a5j_A RAS-related protein RAB 97.4 0.00013 4.4E-09 67.7 5.8 23 273-295 22-44 (191)
324 3t34_A Dynamin-related protein 97.4 0.00017 5.8E-09 74.7 7.3 23 274-296 36-58 (360)
325 2g3y_A GTP-binding protein GEM 97.4 0.00013 4.5E-09 69.8 5.6 23 273-295 38-60 (211)
326 3cpj_B GTP-binding protein YPT 97.4 0.00018 6.3E-09 68.6 6.6 23 273-295 14-36 (223)
327 2iwr_A Centaurin gamma 1; ANK 97.4 0.00011 3.6E-09 67.1 4.7 23 273-295 8-30 (178)
328 2qag_A Septin-2, protein NEDD5 97.4 0.00096 3.3E-08 69.2 12.5 166 89-263 35-224 (361)
329 3mca_A HBS1, elongation factor 97.4 4.2E-05 1.4E-09 84.7 2.2 23 273-295 178-200 (592)
330 2atv_A RERG, RAS-like estrogen 97.4 0.00024 8.2E-09 66.2 7.1 24 272-295 28-51 (196)
331 1udx_A The GTP-binding protein 97.4 0.00013 4.6E-09 77.1 5.8 58 272-343 157-217 (416)
332 4fid_A G protein alpha subunit 97.4 0.00077 2.6E-08 69.3 11.2 119 138-268 153-324 (340)
333 3bwd_D RAC-like GTP-binding pr 97.4 8.6E-05 2.9E-09 67.8 3.4 24 272-295 8-31 (182)
334 2dy1_A Elongation factor G; tr 97.4 0.001 3.4E-08 74.7 12.6 119 91-221 9-139 (665)
335 1oix_A RAS-related protein RAB 97.4 0.00049 1.7E-08 64.1 8.6 150 90-268 28-188 (191)
336 2yc2_C IFT27, small RAB-relate 97.3 7.7E-05 2.6E-09 69.7 2.8 23 273-295 21-43 (208)
337 2j0v_A RAC-like GTP-binding pr 97.3 0.00034 1.2E-08 65.9 7.1 23 273-295 10-32 (212)
338 3lvq_E ARF-GAP with SH3 domain 97.3 0.00017 5.8E-09 77.9 5.6 56 272-342 322-377 (497)
339 2h5e_A Peptide chain release f 97.3 0.00037 1.3E-08 76.1 8.2 123 90-224 12-150 (529)
340 1m7b_A RND3/RHOE small GTP-bin 97.3 0.00032 1.1E-08 64.6 6.7 23 273-295 8-30 (184)
341 2j1l_A RHO-related GTP-binding 97.3 0.00023 7.9E-09 67.6 5.8 24 272-295 34-57 (214)
342 3l0i_B RAS-related protein RAB 97.3 2.8E-05 9.6E-10 72.9 -0.6 23 273-295 34-56 (199)
343 2hup_A RAS-related protein RAB 97.3 0.0002 7E-09 67.3 5.3 23 273-295 30-52 (201)
344 3ohm_A Guanine nucleotide-bind 97.3 0.00037 1.3E-08 71.4 7.5 118 140-269 161-315 (327)
345 3llu_A RAS-related GTP-binding 97.3 0.00024 8.2E-09 66.3 5.5 24 272-295 20-43 (196)
346 3ihw_A Centg3; RAS, centaurin, 97.3 0.0002 6.7E-09 66.5 4.8 24 272-295 20-43 (184)
347 2wkq_A NPH1-1, RAS-related C3 97.3 0.00054 1.8E-08 69.1 8.3 56 272-342 155-214 (332)
348 1azs_C GS-alpha; complex (lyas 97.2 0.00022 7.4E-09 75.1 5.3 117 140-268 211-381 (402)
349 2b6h_A ADP-ribosylation factor 97.2 0.00011 3.6E-09 68.7 2.6 25 271-295 28-52 (192)
350 2f7s_A C25KG, RAS-related prot 97.2 0.00013 4.5E-09 69.1 3.2 23 273-295 26-48 (217)
351 1gwn_A RHO-related GTP-binding 97.2 0.00041 1.4E-08 65.6 6.6 24 272-295 28-51 (205)
352 3q3j_B RHO-related GTP-binding 97.2 0.00047 1.6E-08 65.5 6.8 24 272-295 27-50 (214)
353 2qm8_A GTPase/ATPase; G protei 97.2 0.00035 1.2E-08 71.9 6.0 109 144-271 146-260 (337)
354 2xtz_A Guanine nucleotide-bind 97.2 0.00014 4.7E-09 75.4 2.9 110 147-268 184-341 (354)
355 2zej_A Dardarin, leucine-rich 97.2 0.00026 8.9E-09 65.4 4.4 23 273-295 3-25 (184)
356 2qm8_A GTPase/ATPase; G protei 97.2 8E-05 2.7E-09 76.7 0.9 25 271-295 54-78 (337)
357 2qpt_A EH domain-containing pr 97.1 0.0011 3.7E-08 72.7 9.5 75 147-224 155-234 (550)
358 2wsm_A Hydrogenase expression/ 97.1 0.00038 1.3E-08 66.1 5.2 83 181-270 129-212 (221)
359 3q5d_A Atlastin-1; G protein, 97.1 0.00037 1.3E-08 74.3 5.5 22 274-295 69-90 (447)
360 2dby_A GTP-binding protein; GD 97.1 0.00044 1.5E-08 72.0 5.9 77 208-295 201-281 (368)
361 2f9l_A RAB11B, member RAS onco 97.1 0.0007 2.4E-08 63.3 6.6 23 273-295 6-28 (199)
362 3tr5_A RF-3, peptide chain rel 97.1 0.0002 6.9E-09 78.1 3.1 24 272-295 13-36 (528)
363 1oix_A RAS-related protein RAB 97.1 0.00099 3.4E-08 62.0 7.5 23 273-295 30-52 (191)
364 2qag_A Septin-2, protein NEDD5 97.1 0.00031 1.1E-08 72.9 4.3 23 273-295 38-60 (361)
365 3o47_A ADP-ribosylation factor 97.1 0.00017 5.8E-09 73.9 2.1 24 272-295 165-188 (329)
366 3izy_P Translation initiation 97.0 0.00015 5.2E-09 79.1 1.6 58 273-344 5-65 (537)
367 3th5_A RAS-related C3 botulinu 96.1 0.0001 3.4E-09 69.3 0.0 24 272-295 30-53 (204)
368 3r7w_B Gtpase2, GTP-binding pr 97.0 0.00058 2E-08 69.8 5.6 112 146-268 46-170 (331)
369 3t1o_A Gliding protein MGLA; G 97.0 0.00026 8.8E-09 65.3 2.6 23 273-295 15-37 (198)
370 2qag_B Septin-6, protein NEDD5 97.0 0.00073 2.5E-08 71.5 6.0 63 271-343 39-107 (427)
371 3j25_A Tetracycline resistance 97.0 0.00079 2.7E-08 75.2 6.6 73 140-224 61-135 (638)
372 1d2e_A Elongation factor TU (E 97.0 0.00063 2.2E-08 71.4 5.5 67 273-342 4-77 (397)
373 2c78_A Elongation factor TU-A; 96.9 0.00029 1E-08 74.1 2.7 69 272-343 11-87 (405)
374 2elf_A Protein translation elo 96.9 0.00042 1.4E-08 72.2 3.7 49 274-344 23-73 (370)
375 1zun_B Sulfate adenylate trans 96.9 0.001 3.5E-08 70.7 6.5 24 273-296 25-48 (434)
376 1f60_A Elongation factor EEF1A 96.9 0.00076 2.6E-08 72.3 5.4 23 273-295 8-30 (458)
377 2xex_A Elongation factor G; GT 96.9 0.00079 2.7E-08 75.9 5.7 70 273-344 11-88 (693)
378 3sop_A Neuronal-specific septi 96.9 0.00063 2.2E-08 67.7 4.4 23 274-296 4-26 (270)
379 4dkx_A RAS-related protein RAB 96.8 0.0012 4.1E-08 63.3 5.9 23 273-295 14-36 (216)
380 1zo1_I IF2, translation initia 96.8 0.00048 1.6E-08 74.5 3.3 59 272-344 4-64 (501)
381 2h5e_A Peptide chain release f 96.8 0.00073 2.5E-08 73.7 4.6 25 271-295 12-36 (529)
382 3dpu_A RAB family protein; roc 96.8 0.00065 2.2E-08 74.1 3.8 23 273-295 42-64 (535)
383 1wb1_A Translation elongation 96.7 0.00052 1.8E-08 74.0 2.9 64 272-342 19-84 (482)
384 1kk1_A EIF2gamma; initiation o 96.7 0.00099 3.4E-08 70.2 4.6 23 273-295 11-33 (410)
385 1n0u_A EF-2, elongation factor 96.7 0.0015 5.1E-08 75.2 6.0 24 272-295 19-42 (842)
386 3p32_A Probable GTPase RV1496/ 96.6 0.00079 2.7E-08 69.6 3.0 23 273-295 80-102 (355)
387 1tq4_A IIGP1, interferon-induc 96.6 0.0024 8.3E-08 67.3 6.7 23 273-295 70-92 (413)
388 1jny_A EF-1-alpha, elongation 96.6 0.00081 2.8E-08 71.5 3.0 24 272-295 6-29 (435)
389 4fn5_A EF-G 1, elongation fact 96.6 0.0099 3.4E-07 67.1 11.9 66 146-223 85-152 (709)
390 1s0u_A EIF-2-gamma, translatio 96.6 0.0016 5.5E-08 68.6 5.0 24 272-295 8-31 (408)
391 2p67_A LAO/AO transport system 96.5 0.0012 4.3E-08 67.7 3.9 25 271-295 55-79 (341)
392 3sjy_A Translation initiation 96.4 0.0012 4.2E-08 69.3 3.1 24 272-295 8-31 (403)
393 3ney_A 55 kDa erythrocyte memb 96.4 0.0018 6.1E-08 61.4 3.8 42 270-323 17-58 (197)
394 1jal_A YCHF protein; nucleotid 96.4 0.0046 1.6E-07 64.1 7.2 88 93-193 4-108 (363)
395 2wsm_A Hydrogenase expression/ 96.4 0.00071 2.4E-08 64.2 0.9 25 272-296 30-54 (221)
396 1ko7_A HPR kinase/phosphatase; 96.3 0.0036 1.2E-07 63.6 5.4 81 202-295 73-167 (314)
397 3l82_B F-box only protein 4; T 96.2 0.013 4.4E-07 56.0 8.7 97 170-271 114-222 (227)
398 1r5b_A Eukaryotic peptide chai 96.2 0.0019 6.4E-08 69.4 3.3 24 272-295 43-66 (467)
399 1dar_A EF-G, elongation factor 96.2 0.0032 1.1E-07 70.9 5.2 23 273-295 13-35 (691)
400 2qnr_A Septin-2, protein NEDD5 96.0 0.004 1.4E-07 62.8 4.1 22 274-295 20-41 (301)
401 1g7s_A Translation initiation 96.0 0.0041 1.4E-07 68.7 4.5 23 273-295 6-28 (594)
402 2hf9_A Probable hydrogenase ni 96.0 0.0039 1.3E-07 59.2 3.7 58 208-270 164-222 (226)
403 2qag_C Septin-7; cell cycle, c 96.0 0.0055 1.9E-07 64.7 5.1 23 274-296 33-55 (418)
404 3avx_A Elongation factor TS, e 95.8 0.0056 1.9E-07 71.9 4.8 70 273-342 297-370 (1289)
405 3cb4_D GTP-binding protein LEP 95.7 0.0046 1.6E-07 68.3 3.2 23 273-295 5-27 (599)
406 1n0u_A EF-2, elongation factor 95.7 0.0052 1.8E-07 70.7 3.7 65 146-222 98-164 (842)
407 2rdo_7 EF-G, elongation factor 95.7 0.011 3.9E-07 66.5 6.4 23 273-295 11-33 (704)
408 3c5h_A Glucocorticoid receptor 95.6 0.0025 8.7E-08 62.4 0.8 22 273-294 20-50 (255)
409 2ywe_A GTP-binding protein LEP 95.6 0.0053 1.8E-07 67.8 3.3 23 273-295 7-29 (600)
410 2dy1_A Elongation factor G; tr 95.6 0.012 4.3E-07 65.8 6.3 25 271-295 8-32 (665)
411 2v3c_C SRP54, signal recogniti 95.4 0.0073 2.5E-07 64.1 3.5 23 273-295 100-122 (432)
412 2j37_W Signal recognition part 95.4 0.0056 1.9E-07 66.2 2.4 115 144-269 182-310 (504)
413 2j37_W Signal recognition part 95.4 0.0033 1.1E-07 68.1 0.5 24 272-295 101-124 (504)
414 1znw_A Guanylate kinase, GMP k 95.2 0.0096 3.3E-07 56.2 3.2 27 269-295 17-43 (207)
415 3l2o_B F-box only protein 4; s 95.2 0.092 3.2E-06 52.5 10.3 95 172-271 201-307 (312)
416 2qnr_A Septin-2, protein NEDD5 95.1 0.047 1.6E-06 54.9 8.3 93 184-281 129-224 (301)
417 1kgd_A CASK, peripheral plasma 95.1 0.011 3.8E-07 54.5 3.1 25 271-295 4-28 (180)
418 1lvg_A Guanylate kinase, GMP k 94.9 0.012 4.2E-07 55.2 3.1 25 271-295 3-27 (198)
419 1ex7_A Guanylate kinase; subst 94.9 0.014 4.7E-07 54.7 3.4 23 273-295 2-24 (186)
420 3c8u_A Fructokinase; YP_612366 94.3 0.016 5.5E-07 54.6 2.3 25 271-295 21-45 (208)
421 2hf9_A Probable hydrogenase ni 94.3 0.031 1.1E-06 52.8 4.4 24 272-295 38-61 (226)
422 1ni3_A YCHF GTPase, YCHF GTP-b 94.2 0.049 1.7E-06 56.9 5.9 90 92-193 21-127 (392)
423 1z6g_A Guanylate kinase; struc 93.9 0.03 1E-06 53.4 3.3 25 271-295 22-46 (218)
424 1s96_A Guanylate kinase, GMP k 93.9 0.029 1E-06 53.7 3.2 25 271-295 15-39 (219)
425 2qor_A Guanylate kinase; phosp 93.7 0.036 1.2E-06 52.0 3.3 25 271-295 11-35 (204)
426 2eyu_A Twitching motility prot 93.6 0.034 1.1E-06 54.8 3.2 27 269-295 22-48 (261)
427 3r7w_B Gtpase2, GTP-binding pr 93.5 0.071 2.4E-06 54.3 5.5 22 274-295 1-22 (331)
428 3a00_A Guanylate kinase, GMP k 93.5 0.04 1.4E-06 50.9 3.3 23 273-295 2-24 (186)
429 3tr0_A Guanylate kinase, GMP k 93.5 0.039 1.3E-06 51.3 3.2 25 271-295 6-30 (205)
430 1zp6_A Hypothetical protein AT 93.3 0.037 1.3E-06 50.9 2.7 25 271-295 8-32 (191)
431 3vqt_A RF-3, peptide chain rel 93.3 0.071 2.4E-06 58.2 5.3 25 271-295 30-54 (548)
432 3tau_A Guanylate kinase, GMP k 93.0 0.051 1.8E-06 51.2 3.2 25 271-295 7-31 (208)
433 1ye8_A Protein THEP1, hypothet 93.0 0.051 1.7E-06 50.2 3.1 23 274-296 2-24 (178)
434 3b85_A Phosphate starvation-in 92.7 0.076 2.6E-06 50.4 4.0 26 270-295 20-45 (208)
435 2v9p_A Replication protein E1; 92.7 0.059 2E-06 54.4 3.3 27 270-296 124-150 (305)
436 2qag_C Septin-7; cell cycle, c 92.6 0.1 3.5E-06 55.0 5.2 92 182-280 139-232 (418)
437 2j41_A Guanylate kinase; GMP, 92.6 0.064 2.2E-06 49.7 3.2 25 271-295 5-29 (207)
438 3tif_A Uncharacterized ABC tra 92.5 0.058 2E-06 52.2 2.9 25 271-295 30-54 (235)
439 2v3c_C SRP54, signal recogniti 92.5 0.16 5.6E-06 53.6 6.6 69 145-222 180-252 (432)
440 3jvv_A Twitching mobility prot 92.4 0.092 3.1E-06 54.1 4.5 37 258-295 110-146 (356)
441 2pcj_A ABC transporter, lipopr 92.3 0.06 2E-06 51.7 2.7 25 271-295 29-53 (224)
442 2cbz_A Multidrug resistance-as 92.2 0.067 2.3E-06 51.8 2.9 25 271-295 30-54 (237)
443 1np6_A Molybdopterin-guanine d 92.2 0.074 2.5E-06 49.1 3.1 22 274-295 8-29 (174)
444 3j25_A Tetracycline resistance 92.0 0.052 1.8E-06 60.4 2.1 24 273-296 3-26 (638)
445 2kjq_A DNAA-related protein; s 92.0 0.054 1.9E-06 48.5 1.8 25 271-295 35-59 (149)
446 4gp7_A Metallophosphoesterase; 92.0 0.069 2.4E-06 48.7 2.6 23 271-293 8-30 (171)
447 4eun_A Thermoresistant glucoki 91.9 0.088 3E-06 49.1 3.3 25 271-295 28-52 (200)
448 2ff7_A Alpha-hemolysin translo 91.9 0.075 2.6E-06 51.8 2.9 25 271-295 34-58 (247)
449 1sgw_A Putative ABC transporte 91.9 0.078 2.7E-06 50.6 3.0 25 271-295 34-58 (214)
450 1mv5_A LMRA, multidrug resista 91.9 0.073 2.5E-06 51.7 2.7 25 271-295 27-51 (243)
451 2pze_A Cystic fibrosis transme 91.8 0.078 2.7E-06 51.0 2.9 25 271-295 33-57 (229)
452 1kag_A SKI, shikimate kinase I 91.8 0.093 3.2E-06 47.2 3.3 24 272-295 4-27 (173)
453 1g6h_A High-affinity branched- 91.7 0.081 2.8E-06 51.8 2.9 25 271-295 32-56 (257)
454 1b0u_A Histidine permease; ABC 91.7 0.081 2.8E-06 52.0 2.9 25 271-295 31-55 (262)
455 2d2e_A SUFC protein; ABC-ATPas 91.6 0.09 3.1E-06 51.3 3.2 25 271-295 28-52 (250)
456 2ghi_A Transport protein; mult 91.6 0.085 2.9E-06 51.8 2.9 25 271-295 45-69 (260)
457 3gfo_A Cobalt import ATP-bindi 91.5 0.086 3E-06 52.3 2.9 25 271-295 33-57 (275)
458 3uie_A Adenylyl-sulfate kinase 91.5 0.098 3.4E-06 48.7 3.1 25 271-295 24-48 (200)
459 4g1u_C Hemin import ATP-bindin 91.5 0.084 2.9E-06 52.1 2.8 25 271-295 36-60 (266)
460 2bdt_A BH3686; alpha-beta prot 91.4 0.092 3.1E-06 48.2 2.8 23 273-295 3-25 (189)
461 1ji0_A ABC transporter; ATP bi 91.4 0.092 3.1E-06 50.9 2.9 25 271-295 31-55 (240)
462 2zu0_C Probable ATP-dependent 91.4 0.097 3.3E-06 51.6 3.1 25 271-295 45-69 (267)
463 2olj_A Amino acid ABC transpor 91.4 0.091 3.1E-06 51.8 2.9 25 271-295 49-73 (263)
464 2ixe_A Antigen peptide transpo 91.4 0.092 3.2E-06 51.9 2.9 25 271-295 44-68 (271)
465 2qi9_C Vitamin B12 import ATP- 91.4 0.093 3.2E-06 51.2 2.9 25 271-295 25-49 (249)
466 3asz_A Uridine kinase; cytidin 91.3 0.093 3.2E-06 49.0 2.8 25 271-295 5-29 (211)
467 2i3b_A HCR-ntpase, human cance 91.3 0.11 3.8E-06 48.5 3.2 23 273-295 2-24 (189)
468 3nh6_A ATP-binding cassette SU 91.3 0.068 2.3E-06 53.9 1.9 25 271-295 79-103 (306)
469 1vpl_A ABC transporter, ATP-bi 91.2 0.097 3.3E-06 51.3 2.9 25 271-295 40-64 (256)
470 1htw_A HI0065; nucleotide-bind 91.2 0.11 3.7E-06 47.1 3.1 26 271-296 32-57 (158)
471 1knq_A Gluconate kinase; ALFA/ 91.2 0.11 3.7E-06 47.0 3.0 24 272-295 8-31 (175)
472 1rz3_A Hypothetical protein rb 91.1 0.13 4.6E-06 47.9 3.6 24 272-295 22-45 (201)
473 2ewv_A Twitching motility prot 91.1 0.1 3.5E-06 54.1 3.0 26 270-295 134-159 (372)
474 2nq2_C Hypothetical ABC transp 91.0 0.11 3.7E-06 50.9 3.0 25 271-295 30-54 (253)
475 3lnc_A Guanylate kinase, GMP k 91.0 0.076 2.6E-06 50.6 1.9 25 271-295 26-51 (231)
476 2ihy_A ABC transporter, ATP-bi 91.0 0.11 3.6E-06 51.8 2.9 25 271-295 46-70 (279)
477 3vaa_A Shikimate kinase, SK; s 90.9 0.14 4.9E-06 47.5 3.7 27 271-297 24-50 (199)
478 2yz2_A Putative ABC transporte 90.9 0.11 3.7E-06 51.2 2.9 25 271-295 32-56 (266)
479 2gza_A Type IV secretion syste 90.9 0.11 3.7E-06 53.6 3.0 26 270-295 173-198 (361)
480 1qhx_A CPT, protein (chloramph 90.9 0.13 4.5E-06 46.4 3.3 25 272-296 3-27 (178)
481 3ec2_A DNA replication protein 90.8 0.13 4.4E-06 46.9 3.1 25 271-295 37-61 (180)
482 3kb2_A SPBC2 prophage-derived 90.7 0.14 4.6E-06 45.8 3.2 23 274-296 3-25 (173)
483 2f1r_A Molybdopterin-guanine d 90.6 0.076 2.6E-06 48.8 1.3 22 274-295 4-25 (171)
484 4a74_A DNA repair and recombin 90.5 0.1 3.5E-06 49.1 2.2 25 271-295 24-48 (231)
485 3nwj_A ATSK2; P loop, shikimat 90.3 0.2 6.8E-06 48.9 4.2 27 270-296 46-72 (250)
486 2w0m_A SSO2452; RECA, SSPF, un 90.3 0.13 4.3E-06 48.4 2.7 25 271-295 22-46 (235)
487 2bbw_A Adenylate kinase 4, AK4 90.2 0.17 5.8E-06 48.7 3.6 26 272-297 27-52 (246)
488 2pt7_A CAG-ALFA; ATPase, prote 90.2 0.11 3.9E-06 52.8 2.4 25 271-295 170-194 (330)
489 1kht_A Adenylate kinase; phosp 90.2 0.16 5.6E-06 46.1 3.3 24 272-295 3-26 (192)
490 2onk_A Molybdate/tungstate ABC 90.1 0.14 4.8E-06 49.6 2.9 23 273-295 25-47 (240)
491 2bbs_A Cystic fibrosis transme 90.0 0.13 4.5E-06 51.4 2.7 25 271-295 63-87 (290)
492 2ehv_A Hypothetical protein PH 90.0 0.16 5.3E-06 48.5 3.1 25 270-294 28-52 (251)
493 4fn5_A EF-G 1, elongation fact 89.9 0.17 5.8E-06 57.0 3.7 23 273-295 14-36 (709)
494 3lw7_A Adenylate kinase relate 89.9 0.18 6E-06 44.9 3.2 21 274-295 3-23 (179)
495 1jbk_A CLPB protein; beta barr 89.9 0.2 6.8E-06 44.9 3.6 38 258-295 26-66 (195)
496 3cm0_A Adenylate kinase; ATP-b 89.7 0.18 6.2E-06 45.9 3.2 26 271-296 3-28 (186)
497 1odf_A YGR205W, hypothetical 3 89.7 0.23 7.8E-06 49.6 4.1 24 272-295 31-54 (290)
498 2rhm_A Putative kinase; P-loop 89.7 0.17 5.7E-06 46.3 2.9 25 272-296 5-29 (193)
499 1ly1_A Polynucleotide kinase; 89.7 0.17 6E-06 45.5 3.0 21 274-294 4-24 (181)
500 3tui_C Methionine import ATP-b 89.6 0.17 5.8E-06 52.3 3.1 25 271-295 53-77 (366)
No 1
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=100.00 E-value=2.3e-63 Score=523.70 Aligned_cols=365 Identities=35% Similarity=0.607 Sum_probs=266.2
Q ss_pred CcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHh
Q 008807 99 ASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHL 178 (553)
Q Consensus 99 ~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~ 178 (553)
.+|.|||+.||++|++.+||+|...|+.. .+..+|+||+.+.|++.+.++. ...++|++.+.++
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~~~~~~-----~~~~~C~RC~~l~hy~~~~~v~-----------~~~e~f~~~L~~~ 68 (369)
T 3ec1_A 5 LRCIGCGAAIQFENPKNAGYAPKSVLEKD-----AEEVICQRCFRLKHYNEVQDVP-----------LDDDDFLSMLHRI 68 (369)
T ss_dssp ----------------------------------------------------------------------CHHHHHHHHH
T ss_pred ceeCCCCceeecCCCCCCCCCChHHhcCC-----CCCEEchhHHHhhccccccCCc-----------CCHHHHHHHHHHh
Confidence 57999999999999999999998876521 3479999999999998877652 2467899999999
Q ss_pred hhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccC
Q 008807 179 RREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAG 258 (553)
Q Consensus 179 ~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~g 258 (553)
...+++|++|+|++|++.++.+.+...++++|+++|+||+||++.+...+.+.+|+.+.+...++...+++++||++++|
T Consensus 69 ~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~g 148 (369)
T 3ec1_A 69 GESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIG 148 (369)
T ss_dssp HHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBT
T ss_pred hccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCC
Confidence 88999999999999999988888888778899999999999998765566677787654444444335789999999999
Q ss_pred hhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEc
Q 008807 259 IVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDT 338 (553)
Q Consensus 259 i~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDT 338 (553)
+++|++.|.+..++++++++|.||||||||||+|++..... .....++++||||++...+. +..+..++||
T Consensus 149 i~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~~~~~--------~~~~~~~~~~gtT~~~~~~~-~~~~~~liDt 219 (369)
T 3ec1_A 149 MAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEATGK--------GNVITTSYFPGTTLDMIEIP-LESGATLYDT 219 (369)
T ss_dssp HHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHHHHHT--------TCCCEEEECTTSSCEEEEEE-CSTTCEEEEC
T ss_pred HHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhhccCC--------ccceeecCCCCeEEeeEEEE-eCCCeEEEeC
Confidence 99999999988888899999999999999999999863111 13456789999999876665 4567899999
Q ss_pred CCccCCCccccccCcCcccccccccccCCceeecccccccCccccccccCCcEEEEeeeEeEEeeccCCceEEEEEcCCC
Q 008807 339 PGVHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVISETETNNEFKSHGLNGFTIFWGGLVRIDLLKVLPETCLTFYGPKS 418 (553)
Q Consensus 339 PGi~~~~~~~~~l~~~~l~~l~p~~~l~~~~~~~~~~h~e~~c~~~~~~~g~sl~~GGL~rid~l~~~~~~~~t~~~s~~ 418 (553)
||+...+++...++.+++..++|..++.+..|..+ +++++|+|||.|+|++... ...|++|.++.
T Consensus 220 PG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~--------------~~~~~~~g~l~~l~~l~~~-~~~~~~v~~k~ 284 (369)
T 3ec1_A 220 PGIINHHQMAHFVDARDLKIITPKREIHPRVYQLN--------------EGQTLFFGGLARLDYIKGG-RRSFVCYMANE 284 (369)
T ss_dssp CSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEEC--------------TTEEEEETTTEEEEEEESS-SEEEEEEECTT
T ss_pred CCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEc--------------CCceEEECCEEEEEEccCC-CceEEEEecCC
Confidence 99998888888899999999999988888777654 6999999999999999984 67899999999
Q ss_pred cccccccCccHHHHHHHhcCCcccCCCCccccccCCCCceeEEEEEeecCCCCCcccEEEcccccEEeeccccccccCCc
Q 008807 419 LQVYMVPTDKADEFYQKELGVTLTPPIGKQKAEGWKGLDRERLLEIKFEDTERPASDVAISGLGWISVEPVRRSIRNSDI 498 (553)
Q Consensus 419 l~~h~~~~~~a~~~~~~~~g~~l~Pp~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~Divi~glGwi~v~~~g~~~~~~~~ 498 (553)
.++|.+++++|+++|++++|.+|+||++.+ +++||++..+ .+.++ .+.+||||+|||||+|++
T Consensus 285 d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~-~~~~~~l~~~-~~~~~-----~~~~di~i~glgwi~v~~---------- 347 (369)
T 3ec1_A 285 LTVHRTKLEKADSLYANQLGELLSPPSKRY-AAEFPPLVPR-SLSVK-----ERKTDIVFSGLGWVTCND---------- 347 (369)
T ss_dssp SCEEEEEGGGHHHHHHHHBTTTBCSSCGGG-TTTCCCEEEE-EEECC-----SSSEEEEETTTEEEEESS----------
T ss_pred cccccccHHHHHHHHHHhcCCccCCCCchh-hhhccCcEEE-EEEeC-----CCceeEEEccCceEEeeC----------
Confidence 999999999999999999999999999654 6788888764 35554 345899999999999995
Q ss_pred ccccCCCceEEEEEccCCeEEEecCCCc
Q 008807 499 NLESTSGELHLAVHVPKPVEVFVRNPMP 526 (553)
Q Consensus 499 ~~~~~~g~~~~~v~~P~gv~v~~R~pl~ 526 (553)
+++++++|+|+||+|++|+||+
T Consensus 348 ------~~~~~~~~~p~~v~v~~R~~li 369 (369)
T 3ec1_A 348 ------PGAQLVVHAPKGVDVFIRQSLI 369 (369)
T ss_dssp ------SCCEEEEEEETTSCEEEEECCC
T ss_pred ------CceEEEEEeCCCceEEeecCCC
Confidence 2678999999999999999985
No 2
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=100.00 E-value=1.3e-62 Score=517.60 Aligned_cols=364 Identities=34% Similarity=0.577 Sum_probs=260.8
Q ss_pred CcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHh
Q 008807 99 ASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHL 178 (553)
Q Consensus 99 ~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~ 178 (553)
.+|.|||+.||++|++.|||+++..|+.. ..+|+||+.+.|++.+.++. ...++|++.+.++
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~~~~~~-------~~~C~Rc~~l~hy~~~~~v~-----------~~~e~f~~~l~~i 66 (368)
T 3h2y_A 5 IKCIGCGVEIQTEDKNEVGYAPASSLEKE-------QVICQRCFRLKHYNEIQDVS-----------LTDDDFLRILNGI 66 (368)
T ss_dssp ---------------------------------------------------------------------CHHHHHHHHHH
T ss_pred ceeCCCcceeEcCCCCCCCCCChHHccCC-------CcEEhhhhhhhccCccccCC-----------CCHHHHHHHHHHH
Confidence 57999999999999999999999877533 89999999999998887762 3468999999999
Q ss_pred hhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccC
Q 008807 179 RREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAG 258 (553)
Q Consensus 179 ~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~g 258 (553)
.+.+|+|++|+|++|++.++.+.+.+.++++|+++|+||+||++.....+.+.+|+.......++....++.+||++++|
T Consensus 67 ~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~g 146 (368)
T 3h2y_A 67 GKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQG 146 (368)
T ss_dssp HHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTT
T ss_pred hccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcC
Confidence 88888999999999988888888888778899999999999998765556677776554444444334789999999999
Q ss_pred hhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEc
Q 008807 259 IVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDT 338 (553)
Q Consensus 259 i~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDT 338 (553)
+++|++.|.+..++.+++++|.||||||||||+|++....+. .....+|+.||||++...+. +..+..++||
T Consensus 147 i~~L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~~~~~~-------~~~~~~~~~~gtT~~~~~~~-~~~~~~liDt 218 (368)
T 3h2y_A 147 IAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDET-------ENVITTSHFPGTTLDLIDIP-LDEESSLYDT 218 (368)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHHHTTSC-------SSCCEEECCC----CEEEEE-SSSSCEEEEC
T ss_pred HHHHHhhhhhhcccceEEEecCCCCChhHHHHHHHhhhcccc-------ccceecCCCCCeecceEEEE-ecCCeEEEeC
Confidence 999999998888888999999999999999999998742210 12345789999999876665 4556899999
Q ss_pred CCccCCCccccccCcCcccccccccccCCceeecccccccCccccccccCCcEEEEeeeEeEEeeccCCceEEEEEcCCC
Q 008807 339 PGVHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVISETETNNEFKSHGLNGFTIFWGGLVRIDLLKVLPETCLTFYGPKS 418 (553)
Q Consensus 339 PGi~~~~~~~~~l~~~~l~~l~p~~~l~~~~~~~~~~h~e~~c~~~~~~~g~sl~~GGL~rid~l~~~~~~~~t~~~s~~ 418 (553)
||+..++++.+.++.+++..++|..++.+..|..+ +++++|+|||.|+|++... ...|.+|.++.
T Consensus 219 PG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~--------------~~~~~~~g~l~~~d~l~~~-~~~~~~v~nk~ 283 (368)
T 3h2y_A 219 PGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLN--------------EEQTLFFSGLARFDYVSGG-RRAFTCHFSNR 283 (368)
T ss_dssp CCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEEC--------------TTEEEEETTTEEEEEEESS-SEEEEEEECTT
T ss_pred CCcCcHHHHHHHhhHHHHHHhccccccCceEEEEc--------------CCCEEEEcceEEEEEecCC-CceEEEEecCc
Confidence 99999888888899999999999988888777754 6999999999999999974 67899999999
Q ss_pred cccccccCccHHHHHHHhcCCcccCCCCccccccCCCCceeEEEEEeecCCCCCcccEEEcccccEEeeccccccccCCc
Q 008807 419 LQVYMVPTDKADEFYQKELGVTLTPPIGKQKAEGWKGLDRERLLEIKFEDTERPASDVAISGLGWISVEPVRRSIRNSDI 498 (553)
Q Consensus 419 l~~h~~~~~~a~~~~~~~~g~~l~Pp~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~Divi~glGwi~v~~~g~~~~~~~~ 498 (553)
.++|.+++++|+++|++++|.+|+||++. .+++|++|..+ .+.++ .+.+||+|+|||||+|++
T Consensus 284 d~~~~~~~~~~~~~~~~~~g~~l~p~~~~-~~~~~~~l~~~-~~~~~-----~~~~di~i~glgwi~v~~---------- 346 (368)
T 3h2y_A 284 LTIHRTKLEKADELYKNHAGDLLSPPTPE-ELENMPELVKY-EFNIR-----EPKTDVVFSGLGWVTVNE---------- 346 (368)
T ss_dssp SCEEEEEHHHHHHHHHHHBTTTBCSSCHH-HHHTSCCEEEE-EEECC-----SSSEEEEETTTEEEEECS----------
T ss_pred cccccccHHHHHHHHHHHhCCccCCCchh-hHhhccCcEEE-EEEec-----CCcceEEEcccceEEEec----------
Confidence 99999999999999999999999999864 46788988765 35554 235899999999999984
Q ss_pred ccccCCCceEEEEEccCCeEEEecCCCc
Q 008807 499 NLESTSGELHLAVHVPKPVEVFVRNPMP 526 (553)
Q Consensus 499 ~~~~~~g~~~~~v~~P~gv~v~~R~pl~ 526 (553)
+++.+++|+|+||+|++|+||+
T Consensus 347 ------~~~~~~~~~p~~v~v~~r~~~~ 368 (368)
T 3h2y_A 347 ------PGAKIVAHVPKGVSVSLRKSLI 368 (368)
T ss_dssp ------SCCEEEEEEETTCCEEEEECCC
T ss_pred ------CceEEEEEecCCcEEEeecCcC
Confidence 2678999999999999999985
No 3
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.88 E-value=1e-22 Score=206.34 Aligned_cols=155 Identities=22% Similarity=0.234 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCcee
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLS 247 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (553)
.+++ +++.+.++.+|+|++|+|++++..+....+..+++++|+++|+||+||++. .....|.. .+. ..+ ..
T Consensus 11 ~ka~-~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~----~~~~~~~~-~~~--~~g-~~ 81 (282)
T 1puj_A 11 AKAR-REVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADA----AVTQQWKE-HFE--NQG-IR 81 (282)
T ss_dssp THHH-HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCH----HHHHHHHH-HHH--TTT-CC
T ss_pred HHHH-HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCH----HHHHHHHH-HHH--hcC-Cc
Confidence 3444 455566789999999999999887766667777788999999999999863 22344431 111 223 36
Q ss_pred EEEeccCCccChhhhHHHHHHhhc--------------ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCcc
Q 008807 248 VHLTSSKSLAGIVGVASEIQKEKK--------------GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQ 313 (553)
Q Consensus 248 vi~iSAk~g~gi~~Ll~~L~~~~~--------------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~ 313 (553)
++.+||+++.|+++|++.+.+.++ ..+++++|.||||||||||+|.+.. ...+
T Consensus 82 ~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~-------------~~~~ 148 (282)
T 1puj_A 82 SLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKN-------------IAKT 148 (282)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSC-------------CC--
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCc-------------eeec
Confidence 889999999999999887765432 2369999999999999999999752 3457
Q ss_pred CCCCCceeecEEEEeecCCcEEEEcCCccCCC
Q 008807 314 SAVPGTTLGPIQIDAFLGGGKLYDTPGVHLHH 345 (553)
Q Consensus 314 S~~PGTT~~~i~i~~~~~~~~liDTPGi~~~~ 345 (553)
++.||||++...+. ...+..|+||||+..+.
T Consensus 149 ~~~~g~T~~~~~~~-~~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 149 GDRPGITTSQQWVK-VGKELELLDTPGILWPK 179 (282)
T ss_dssp ----------CCEE-ETTTEEEEECCCCCCSC
T ss_pred CCCCCeeeeeEEEE-eCCCEEEEECcCcCCCC
Confidence 88999999765443 35577899999998664
No 4
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=4.3e-22 Score=213.77 Aligned_cols=220 Identities=18% Similarity=0.186 Sum_probs=136.6
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
..+.++|..+.|++++++..-......+.+.. +.++|.....+.+.+....++||+|.. .... ...+.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~-------g~T~d~~~~~~~~~~~~~~l~DT~G~~---~~~~-~~~~~~ 72 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTP-------GVTRDRIYSSAEWLNYDFNLIDTGGID---IGDE-PFLAQI 72 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------------CEEEECTTCSSCCEEEC-------------CHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCC-------CCccceEEEEEEECCceEEEEECCCCC---Ccch-hHHHHH
Confidence 36788999999999999876532221121111 223466667777777788999998863 1111 245678
Q ss_pred HHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEE
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVH 249 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi 249 (553)
+++...++.++|+||+|+|+.+........+..++ .++|+++|+||+|+.+..... .++ ..++...++
T Consensus 73 ~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~---~~~-------~~lg~~~~~ 142 (436)
T 2hjg_A 73 RQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANI---YDF-------YSLGFGEPY 142 (436)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CC---CSS-------GGGSSCCCE
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhH---HHH-------HHcCCCCeE
Confidence 88888888999999999999876443333444433 468999999999997543211 111 123434689
Q ss_pred EeccCCccChhhhHHHHHHhhc----------ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCc
Q 008807 250 LTSSKSLAGIVGVASEIQKEKK----------GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGT 319 (553)
Q Consensus 250 ~iSAk~g~gi~~Ll~~L~~~~~----------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGT 319 (553)
.+||++|.|+++|++.|.+.++ ..+++++|.+|||||||+|+|++. .+..+++.|||
T Consensus 143 ~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~-------------~~~~~~~~~gt 209 (436)
T 2hjg_A 143 PISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE-------------ERVIVSNVAGT 209 (436)
T ss_dssp ECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS-------------TTEEEC-----
T ss_pred EEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCC-------------CceeecCCCCc
Confidence 9999999999999999877553 147999999999999999999975 23346788999
Q ss_pred eeecEEEEeecCC--cEEEEcCCccCCC
Q 008807 320 TLGPIQIDAFLGG--GKLYDTPGVHLHH 345 (553)
Q Consensus 320 T~~~i~i~~~~~~--~~liDTPGi~~~~ 345 (553)
|++.+......++ ..|+||||+....
T Consensus 210 T~d~~~~~~~~~~~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 210 TRDAVDTSFTYNQQEFVIVDTAGMRKKG 237 (436)
T ss_dssp ----CCEEEEETTEEEEETTHHHHTCBT
T ss_pred eeeeeEEEEEECCeEEEEEECCCcCcCc
Confidence 9986544332233 4699999996543
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=2.6e-21 Score=207.89 Aligned_cols=220 Identities=21% Similarity=0.199 Sum_probs=141.6
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
.+.++|..+.|++++++..-....-.+.+.. ..++|.....+.+.+..+.++||+|...+ ......+.++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~-------g~T~d~~~~~~~~~~~~~~l~DT~G~~~~---~~~~~~~~~~ 72 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEE-------GVTRDPVQDTVEWYGKTFKLVDTCGVFDN---PQDIISQKMK 72 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------------CCSEEEEEETTEEEEEEECTTTTSS---GGGCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCC-------CCccceeeEEEEECCeEEEEEECCCcccc---ccchHHHHHH
Confidence 5788899999999999877543322222211 22347777888887778899999886422 1123356788
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhH-HHHHHHHHhhcccCceeEE
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCV-GDWVVEATTKKKLNVLSVH 249 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~-~~~~~~~~~~~~l~~~~vi 249 (553)
++...+++++|+||+|+|+++........+..++ .++|+++|+||+|+.... .... .++ ..+++..++
T Consensus 73 ~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~--~~~~~~~~-------~~lg~~~~~ 143 (439)
T 1mky_A 73 EVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF--EREVKPEL-------YSLGFGEPI 143 (439)
T ss_dssp HHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH--HHHTHHHH-------GGGSSCSCE
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc--HHHHHHHH-------HhcCCCCEE
Confidence 8888888999999999999875433333333322 378999999999985220 1111 111 134444678
Q ss_pred EeccCCccChhhhHHHHHHhhc--------------ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCC
Q 008807 250 LTSSKSLAGIVGVASEIQKEKK--------------GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSA 315 (553)
Q Consensus 250 ~iSAk~g~gi~~Ll~~L~~~~~--------------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~ 315 (553)
.+||++|.|+++|++.|.+.++ ..+++++|.||||||||+|+|++. .+..+++
T Consensus 144 ~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~-------------~~~~v~~ 210 (439)
T 1mky_A 144 PVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK-------------ERALVSP 210 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS-------------TTEEECC
T ss_pred EEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC-------------cccccCC
Confidence 9999999999999988865432 137899999999999999999975 2345789
Q ss_pred CCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 316 VPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 316 ~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.||||++........++ ..++||||+...
T Consensus 211 ~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 211 IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241 (439)
T ss_dssp CC------CCEEEEETTEEEEESSCSCC---
T ss_pred CCCCcCCceEEEEEECCEEEEEEECCCCccc
Confidence 99999986544333233 357899998543
No 6
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=9e-21 Score=204.61 Aligned_cols=221 Identities=18% Similarity=0.166 Sum_probs=141.5
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
...+.++|..++|++++++.......+.+.+.. +-+++....++...+....++||+|+. .......+.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~-------g~t~~~~~~~~~~~~~~~~liDT~G~~----~~~~~~~~~ 91 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTP-------GVTRDRIYSSAEWLNYDFNLIDTGGID----IGDEPFLAQ 91 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------------CEEEECTTCSSCCEEECCCC----------CCHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCC-------CcceeEEEEEEEECCceEEEEECCCCC----CcchHHHHH
Confidence 347899999999999999877543322222111 123366667777777788999998863 112234778
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
++++...++.++|+||+|+|+.+........+..++ .++|+++|+||+|+...... ..++ ..++...+
T Consensus 92 ~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~---~~e~-------~~lg~~~~ 161 (456)
T 4dcu_A 92 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN---IYDF-------YSLGFGEP 161 (456)
T ss_dssp HHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC------------CCS-------GGGSSSSE
T ss_pred HHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhh---HHHH-------HHcCCCce
Confidence 888888889999999999999875544444444443 36899999999998743211 1111 12333457
Q ss_pred EEeccCCccChhhhHHHHHHhhc----------ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCC
Q 008807 249 HLTSSKSLAGIVGVASEIQKEKK----------GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPG 318 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~~~----------g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PG 318 (553)
+.+||++|.|+++|++.+.+... ..+++++|.+|||||||+|+|++. .+..+++.||
T Consensus 162 ~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~-------------~~~~~~~~~g 228 (456)
T 4dcu_A 162 YPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE-------------ERVIVSNVAG 228 (456)
T ss_dssp EECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS-------------TTEEECC---
T ss_pred EEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC-------------CccccCCCCC
Confidence 89999999999999998876542 247899999999999999999964 2345788999
Q ss_pred ceeecEEEEeecCC--cEEEEcCCccCCC
Q 008807 319 TTLGPIQIDAFLGG--GKLYDTPGVHLHH 345 (553)
Q Consensus 319 TT~~~i~i~~~~~~--~~liDTPGi~~~~ 345 (553)
||++.+......++ ..|+||||+....
T Consensus 229 tt~~~~~~~~~~~~~~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 229 TTRDAVDTSFTYNQQEFVIVDTAGMRKKG 257 (456)
T ss_dssp ---CTTSEEEEETTEEEEETTGGGTTTBT
T ss_pred eEEEEEEEEEEECCceEEEEECCCCCcCc
Confidence 99986443322233 4699999987543
No 7
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.82 E-value=4.9e-21 Score=191.98 Aligned_cols=145 Identities=26% Similarity=0.295 Sum_probs=99.1
Q ss_pred HHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEecc
Q 008807 174 KLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSS 253 (553)
Q Consensus 174 ~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSA 253 (553)
++.+.++.+|+|++|+|++++..+....+. ++ ++|.++|+||+||++.. ....|.. .+.. .+ ..+ ++||
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~----~~~~~~~-~~~~--~g-~~v-~iSa 82 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEK----TTKKWVE-FFKK--QG-KRV-ITTH 82 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHH----HHHHHHH-HHHH--TT-CCE-EECC
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHH----HHHHHHH-HHHH--cC-CeE-EEEC
Confidence 344556799999999999988765544444 44 88999999999998642 2334432 1212 23 346 8999
Q ss_pred CCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCc
Q 008807 254 KSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGG 333 (553)
Q Consensus 254 k~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~ 333 (553)
+++.|+++|++.+.+.. .+++++|.||||||||||+|.+.. ...+++.||||+....+. ...+.
T Consensus 83 ~~~~gi~~L~~~l~~~~--~~v~~vG~~~vGKSslin~l~~~~-------------~~~~~~~~g~T~~~~~~~-~~~~~ 146 (262)
T 3cnl_A 83 KGEPRKVLLKKLSFDRL--ARVLIVGVPNTGKSTIINKLKGKR-------------ASSVGAQPGITKGIQWFS-LENGV 146 (262)
T ss_dssp TTSCHHHHHHHHCCCTT--CEEEEEESTTSSHHHHHHHHHTTC-------------C----------CCSCEEE-CTTSC
T ss_pred CCCcCHHHHHHHHHHhh--hheEEeCCCCCCHHHHHHHHhccc-------------ccccCCCCCCccceEEEE-eCCCE
Confidence 99999998877765432 489999999999999999999752 223577899999754443 45678
Q ss_pred EEEEcCCccCCC
Q 008807 334 KLYDTPGVHLHH 345 (553)
Q Consensus 334 ~liDTPGi~~~~ 345 (553)
.|+||||+..+.
T Consensus 147 ~l~DtpG~~~~~ 158 (262)
T 3cnl_A 147 KILDTPGILYKN 158 (262)
T ss_dssp EEESSCEECCCC
T ss_pred EEEECCCcccCc
Confidence 999999998764
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.77 E-value=8.5e-20 Score=186.53 Aligned_cols=192 Identities=19% Similarity=0.191 Sum_probs=125.1
Q ss_pred hhhcccEEEEEcccCCC--ChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEecc
Q 008807 178 LRREKALIVKLVDIVDF--NGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSS 253 (553)
Q Consensus 178 ~~~~adlIl~VVD~~d~--~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSA 253 (553)
++..+|+|+.|+|+.+| +..+++++...+ .++|.++|+||+||+++......+.+|.. .+ ...+ +.++.+||
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~-~y--~~~g-~~v~~~sa 158 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAE-DY--RNIG-YDVYLTSS 158 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHH-HH--HHHT-CCEEECCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHH-HH--HhCC-CeEEEEec
Confidence 46799999999999854 455666665443 57889999999999875310012344431 11 2234 47899999
Q ss_pred CCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCCh-hhhhhhhcCCccCCCCCceeecEEEEeecCC
Q 008807 254 KSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDP-AAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG 332 (553)
Q Consensus 254 k~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~-~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~ 332 (553)
+++.|+++|++. .+|..++++|.+|||||||||+|.+....... +....+++ .+||+....+. .. .
T Consensus 159 ~~~~g~~~L~~~----~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G-------~~tt~~~~~~~-~~-~ 225 (307)
T 1t9h_A 159 KDQDSLADIIPH----FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRG-------KHTTRHVELIH-TS-G 225 (307)
T ss_dssp HHHTTCTTTGGG----GTTSEEEEEESHHHHHHHHHHHHCC--------------------------CCCCCEEE-ET-T
T ss_pred CCCCCHHHHHhh----cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCC-------cccccHHHHhh-cC-C
Confidence 999999887654 45789999999999999999999976332211 10000011 24665432222 22 6
Q ss_pred cEEEEcCCccCCCccccccCcCccccccccc-ccCCceeeccccc-ccCccccccccC
Q 008807 333 GKLYDTPGVHLHHRQAAVVHAEDLPALAPQS-RLRGQSFAVISET-ETNNEFKSHGLN 388 (553)
Q Consensus 333 ~~liDTPGi~~~~~~~~~l~~~~l~~l~p~~-~l~~~~~~~~~~h-~e~~c~~~~~~~ 388 (553)
++++||||+...+ +..++.+++...||+. .+...|.+.+|.| .|++|++..+.+
T Consensus 226 g~v~dtpg~~~~~--l~~lt~e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe 281 (307)
T 1t9h_A 226 GLVADTPGFSSLE--FTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVE 281 (307)
T ss_dssp EEEESSCSCSSCC--CTTCCHHHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHH
T ss_pred EEEecCCCccccc--cccCCHHHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHH
Confidence 7999999998654 1235557777778875 3667898888888 788888766543
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.75 E-value=3.1e-18 Score=175.06 Aligned_cols=190 Identities=16% Similarity=0.149 Sum_probs=119.7
Q ss_pred hhhcccEEEEEcccCCCC--hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEecc
Q 008807 178 LRREKALIVKLVDIVDFN--GSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSS 253 (553)
Q Consensus 178 ~~~~adlIl~VVD~~d~~--~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSA 253 (553)
++.++|++++|+|+++++ ...++++...+ .+.|+++|+||+||.++.. .....+|. +.+ ...+ ..++.+||
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~-v~~~~~~~-~~~--~~~g-~~~~~~SA 150 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEE-KKELERWI-SIY--RDAG-YDVLKVSA 150 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHH-HHHHHHHH-HHH--HHTT-CEEEECCT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccc-cHHHHHHH-HHH--HHCC-CeEEEEEC
Confidence 467999999999998764 33334433322 5789999999999985421 01122221 111 2234 46899999
Q ss_pred CCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCCh-hhhhhhhcCCccCCCCCceeecEEEEeecCC
Q 008807 254 KSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDP-AAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG 332 (553)
Q Consensus 254 k~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~-~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~ 332 (553)
+++.|+++|++.+ .+..++++|.+|||||||+|+|. ....... +....+++ .+||+.. +.......
T Consensus 151 ~~g~gi~~L~~~l----~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G-------~~~t~~~-~~~~~~~~ 217 (302)
T 2yv5_A 151 KTGEGIDELVDYL----EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERG-------RHTTTGV-RLIPFGKG 217 (302)
T ss_dssp TTCTTHHHHHHHT----TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC----------------CCCCE-EEEEETTT
T ss_pred CCCCCHHHHHhhc----cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCC-------CCceeeE-EEEEcCCC
Confidence 9999999876654 57789999999999999999998 5332211 11000011 2356543 22223357
Q ss_pred cEEEEcCCccCCCccccccCcCcccccccccc-cCCceeeccccc-ccCccccccccC
Q 008807 333 GKLYDTPGVHLHHRQAAVVHAEDLPALAPQSR-LRGQSFAVISET-ETNNEFKSHGLN 388 (553)
Q Consensus 333 ~~liDTPGi~~~~~~~~~l~~~~l~~l~p~~~-l~~~~~~~~~~h-~e~~c~~~~~~~ 388 (553)
++++||||+...+ +...++.+++...||+.. +. |.+..|.| .|++|.+..+..
T Consensus 218 g~v~d~pg~~~~~-l~~~lt~e~l~~~f~~~~~~~--c~~~~~~~~~e~~~~v~~~l~ 272 (302)
T 2yv5_A 218 SFVGDTPGFSKVE-ATMFVKPREVRNYFREFLRYQ--CKYPDCTHTNEPGCAVKEAVK 272 (302)
T ss_dssp EEEESSCCCSSCC-GGGTSCGGGGGGGCGGGHHHH--HHSTTCCSSSCTTCHHHHHHH
T ss_pred cEEEECcCcCcCc-ccccCCHHHHHHHHHHHHHcc--CCCCCCCCCCCCCCHHHHHHH
Confidence 8999999997654 224466677777777642 22 55556767 677787665543
No 10
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.72 E-value=2.8e-17 Score=172.21 Aligned_cols=219 Identities=14% Similarity=0.114 Sum_probs=122.8
Q ss_pred ccccceeeccccCCCCCcCCCCCCcCCCCCCcchHHHHHHHHHHHHHHHHHHH--------HHhh---hcccccccccCC
Q 008807 30 YTKPTLIVCKSTLSPETQFESDGAGAAAPTRGDRFLELQKAKEAAKVVVRDSK--------KKRK---KKDKVLKVNSAV 98 (553)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~g~g~~gp~~ge~~~e~~~~~~~~~~~~~~~~--------~~~r---~~~~~~~~~~~~ 98 (553)
|.+||| +.|.+++++. ||+|.+|| ||+.+|.+++..+.++...+++ +.+| .+.....+.++|
T Consensus 114 ~~~~rl-~~~~~l~~~~----~~i~~~g~--ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG 186 (364)
T 2qtf_A 114 YELPII-KETYTKSKIG----EQQGPLGA--GTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVG 186 (364)
T ss_dssp HHHHHH-HHC---------------------------CHHHHHHHHHHHHHHHHHHHHC-------------CCEEEEEC
T ss_pred hhchhh-hhhhHHHHhc----CCCCcCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEEC
Confidence 789999 9998777664 89999999 9998886666555555433322 1111 111222488999
Q ss_pred CcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHh
Q 008807 99 ASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHL 178 (553)
Q Consensus 99 ~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~ 178 (553)
++++|++++|+....... ++.+..|.|. |+..+++.+.+....++||+ ||++..++...++|+.++.+
T Consensus 187 ~~naGKSTLln~L~~~~~-~~~~~~~~T~-------d~~~~~i~~~g~~v~l~DT~---G~i~~lp~~lve~f~~tl~~- 254 (364)
T 2qtf_A 187 YTNSGKTSLFNSLTGLTQ-KVDTKLFTTM-------SPKRYAIPINNRKIMLVDTV---GFIRGIPPQIVDAFFVTLSE- 254 (364)
T ss_dssp BTTSSHHHHHHHHHCC------------C-------CSCEEEEEETTEEEEEEECC---CBCSSCCGGGHHHHHHHHHG-
T ss_pred CCCCCHHHHHHHHHCCCc-cccCCccccc-------CCEEEEEEECCEEEEEEeCC---CchhcCCHHHHHHHHHHHHH-
Confidence 999999999998775432 3444456665 88888888877667788885 56677777778889888876
Q ss_pred hhcccEEEEEcccCCCChhhH-------HHHHHH-hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc-cCceeEE
Q 008807 179 RREKALIVKLVDIVDFNGSFL-------ARIRDL-AGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK-LNVLSVH 249 (553)
Q Consensus 179 ~~~adlIl~VVD~~d~~~s~~-------~~l~~~-~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~-l~~~~vi 249 (553)
+..+|+|++|+|++++..... ..+..+ ..+.|+|+|+||+|+++.. ......... .+.... .....++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~-~l~~~l~~~~~~~~ 331 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD--LYKKLDLVE-KLSKELYSPIFDVI 331 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC--HHHHHHHHH-HHHHHHCSCEEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch--HHHHHHHHH-HHHHHhcCCCCcEE
Confidence 568999999999988641111 112222 1468999999999998643 111111110 000111 1123578
Q ss_pred EeccCCccChhhhHHHHHHhh
Q 008807 250 LTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 250 ~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.+||+++.|+++|++.|.+..
T Consensus 332 ~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 332 PISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHh
Confidence 999999999999999887643
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=4.3e-17 Score=166.47 Aligned_cols=189 Identities=20% Similarity=0.175 Sum_probs=118.1
Q ss_pred hhhcccEEEEEcccCCCCh--hhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEecc
Q 008807 178 LRREKALIVKLVDIVDFNG--SFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSS 253 (553)
Q Consensus 178 ~~~~adlIl~VVD~~d~~~--s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSA 253 (553)
...++|.+|+|+|++++.. ..++++...+ .+.|+++|+||+||.+... .+...+|... + ... ..++.+||
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~-v~~~~~~~~~-~--~~~--~~~~~~SA 154 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDD-LRKVRELEEI-Y--SGL--YPIVKTSA 154 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHH-HHHHHHHHHH-H--TTT--SCEEECCT
T ss_pred ccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchh-HHHHHHHHHH-H--hhh--CcEEEEEC
Confidence 4679999999999998752 2223322211 4789999999999975321 1123344311 1 111 46889999
Q ss_pred CCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCc
Q 008807 254 KSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGG 333 (553)
Q Consensus 254 k~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~ 333 (553)
+++.|++++++.+ .+..++++|.+|||||||||+|.+....... ...- ....-.++|+....+. ....+
T Consensus 155 ktg~gv~~lf~~l----~geiv~l~G~sG~GKSTll~~l~g~~~~~~G--~i~~----~~~~g~~~t~~~~~~~-~~~~g 223 (301)
T 1u0l_A 155 KTGMGIEELKEYL----KGKISTMAGLSGVGKSSLLNAINPGLKLRVS--EVSE----KLQRGRHTTTTAQLLK-FDFGG 223 (301)
T ss_dssp TTCTTHHHHHHHH----SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------------CCCSCCEEE-CTTSC
T ss_pred CCCcCHHHHHHHh----cCCeEEEECCCCCcHHHHHHHhccccccccc--ceec----ccCCCCCceeeeEEEE-cCCCC
Confidence 9999999887654 4678999999999999999999976332211 0000 0001123554332222 23567
Q ss_pred EEEEcCCccCCCccccccCcCcccccccccccCCceeeccccc-ccCccccccc
Q 008807 334 KLYDTPGVHLHHRQAAVVHAEDLPALAPQSRLRGQSFAVISET-ETNNEFKSHG 386 (553)
Q Consensus 334 ~liDTPGi~~~~~~~~~l~~~~l~~l~p~~~l~~~~~~~~~~h-~e~~c~~~~~ 386 (553)
+++||||+.... ...++.+++..+||+... ..|.+..|.| .|++|.+..+
T Consensus 224 ~v~q~p~~~~~~--~~~~~~~~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~ 274 (301)
T 1u0l_A 224 YVVDTPGFANLE--INDIEPEELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEA 274 (301)
T ss_dssp EEESSCSSTTCC--CCSSCHHHHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHH
T ss_pred EEEECcCCCccC--CCcCCHHHHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHH
Confidence 999999998665 344667778888988765 5555445555 4555655443
No 12
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.69 E-value=4.2e-17 Score=169.67 Aligned_cols=192 Identities=19% Similarity=0.171 Sum_probs=122.6
Q ss_pred HHhhhcccEEEEEcccCCCC--hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEe
Q 008807 176 SHLRREKALIVKLVDIVDFN--GSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLT 251 (553)
Q Consensus 176 ~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~i 251 (553)
..++..+|.|+. ||+.+|. ..+++++...+ .++|.++|+||+||+++.. ...+.+|... +..++ +.++++
T Consensus 125 ~~i~anvD~v~i-v~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~-~~~~~~~~~~---y~~~G-~~v~~~ 198 (358)
T 2rcn_A 125 KPIAANIDQIVI-VSAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEG-MDFVNEQMDI---YRNIG-YRVLMV 198 (358)
T ss_dssp EEEEECCCEEEE-EEESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHH-HHHHHHHHHH---HHTTT-CCEEEC
T ss_pred HHHHhcCCEEEE-EEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchh-HHHHHHHHHH---HHhCC-CcEEEE
Confidence 344578898885 4666554 44556654332 4678899999999986531 1224455421 23444 468999
Q ss_pred ccCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhC-CCCh-hhhhhhhcCCccCCCCCceeecEEEEee
Q 008807 252 SSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKKMG-ERDP-AAAMAQKYRPIQSAVPGTTLGPIQIDAF 329 (553)
Q Consensus 252 SAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~-~k~~-~~~~~~~~~~~~S~~PGTT~~~i~i~~~ 329 (553)
||+++.|+++|... .++..++|+|.+|||||||||.|.+... .... +....++. .+||+. ..+..+
T Consensus 199 Sa~~~~gl~~L~~~----~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g-------~~tt~~-~~i~~v 266 (358)
T 2rcn_A 199 SSHTQDGLKPLEEA----LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG-------QHTTTA-ARLYHF 266 (358)
T ss_dssp BTTTTBTHHHHHHH----HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------------CC-CEEEEC
T ss_pred ecCCCcCHHHHHHh----cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC-------ccceEE-EEEEEE
Confidence 99999999887654 4678999999999999999999998643 2211 10000000 125553 344445
Q ss_pred cCCcEEEEcCCccCCCccccccCcCccccccccc-ccCCceeeccccc-ccCcccccccc
Q 008807 330 LGGGKLYDTPGVHLHHRQAAVVHAEDLPALAPQS-RLRGQSFAVISET-ETNNEFKSHGL 387 (553)
Q Consensus 330 ~~~~~liDTPGi~~~~~~~~~l~~~~l~~l~p~~-~l~~~~~~~~~~h-~e~~c~~~~~~ 387 (553)
..+..++||||+.... +..++++++...+++. .+...|.+.+|.| .+++|++....
T Consensus 267 ~q~~~l~dtpgv~e~~--l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lSG~~~r~al 324 (358)
T 2rcn_A 267 PHGGDVIDSPGVREFG--LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAV 324 (358)
T ss_dssp TTSCEEEECHHHHTCC--CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCTTCHHHHHH
T ss_pred CCCCEecCcccHHHhh--hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCCHHHHHHHH
Confidence 5677899999998653 2235566666677765 4566788888888 56677766543
No 13
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.24 E-value=2.4e-11 Score=131.34 Aligned_cols=185 Identities=12% Similarity=-0.017 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC
Q 008807 66 ELQKAKEAAKVVVRDSKKKRKKKDKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS 145 (553)
Q Consensus 66 e~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~ 145 (553)
++..++.++.....+.+++.+..+...++..+|..++|++++++..-.....++.+....| ++.+...+...+
T Consensus 208 ~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT-------~d~~~~~i~~~g 280 (476)
T 3gee_A 208 MQIETLRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTT-------RDYIEECFIHDK 280 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHHHHCC-------------------------CEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCce-------EEEEEEEEEECC
Confidence 3344444444443333333333344457999999999999999987654323333222222 367777777777
Q ss_pred CccEEEecCCCCCccCCCccccHHHH-HHHHHHhhhcccEEEEEcccCCCChh----hHHHHHHHhCCCCEEEEEEcccC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADEL-REKLSHLRREKALIVKLVDIVDFNGS----FLARIRDLAGANPIILVVTKVDL 220 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~-~~~l~~~~~~adlIl~VVD~~d~~~s----~~~~l~~~~~~~pvIlVlNKiDL 220 (553)
....++||+|...+. ...+.+ .+.....+.++|+||+|+|+++.... ....+...+.+.|+++|+||+|+
T Consensus 281 ~~l~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl 355 (476)
T 3gee_A 281 TMFRLTDTAGLREAG-----EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDR 355 (476)
T ss_dssp EEEEEEC-------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTS
T ss_pred eEEEEEECCCCCcch-----hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCC
Confidence 778999998863211 112222 12233446789999999999987543 33333333457899999999999
Q ss_pred CCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 221 LPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
.+... . ...++ ... +...++.+||++|.|+++|++.|.+...
T Consensus 356 ~~~~~-~-~~~~l-----~~~--~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 356 AANAD-A-LIRAI-----ADG--TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CTTTH-H-HHHHH-----HHH--HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCccc-h-hHHHH-----Hhc--CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 76542 1 11111 111 1146899999999999999999987654
No 14
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.23 E-value=1.8e-11 Score=132.47 Aligned_cols=161 Identities=12% Similarity=0.070 Sum_probs=104.0
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCC-CccCCCcccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNG-GYAGGKQFVS 167 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~v-gf~~~~~~~l 167 (553)
+...++.++|..++|++++|+.......-++.+..+.| +|++...+...+....++||+|.. .+.......
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT-------~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~- 312 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT-------RDVISEEIVIRGILFRIVDTAGVRSETNDLVERL- 312 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCS-------SCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCC-
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCee-------eeeEEEEEecCCeEEEEEECCCccccchhhHHHH-
Confidence 34458999999999999999866533222222222333 377777887777778999998864 221111000
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCcee
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLS 247 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (553)
.+.... ..+..+|++|+|+|+++........+...+.++|+++|+||+||.+. .....+.++. ..+ ..
T Consensus 313 --gi~~~~-~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~-~~~~~~~~~~-------~~~-~~ 380 (482)
T 1xzp_A 313 --GIERTL-QEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK-INEEEIKNKL-------GTD-RH 380 (482)
T ss_dssp --CHHHHH-HHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC-CCHHHHHHHH-------TCS-TT
T ss_pred --HHHHHH-HHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccc-cCHHHHHHHh-------cCC-Cc
Confidence 122223 34568999999999987653322334344467899999999999753 2222222221 111 35
Q ss_pred EEEeccCCccChhhhHHHHHHh
Q 008807 248 VHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 248 vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
++.+||+++.|+++|++.|.+.
T Consensus 381 ~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 381 MVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp EEEEEGGGTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998764
No 15
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.15 E-value=3.3e-11 Score=112.82 Aligned_cols=170 Identities=15% Similarity=0.097 Sum_probs=96.2
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
.+..++..+|..++|++++++..-... +.|.+.. ..+.......... ....++||+|...|.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 78 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATI----------GVDFKVKTISVDGNKAKLAIWDTAGQERFR---- 78 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCC----------SEEEEEEEEEETTEEEEEEEEEECSSGGGC----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCcc----------ceEEEEEEEEECCeEEEEEEEeCCCchhhh----
Confidence 344588999999999999998753221 1122110 0022233333332 245788998753221
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~ 237 (553)
......+..+|++|+|+|+.+... .++..+.... ...|+++|+||+|+...........++.
T Consensus 79 --------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~--- 147 (195)
T 1x3s_A 79 --------TLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA--- 147 (195)
T ss_dssp --------CSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH---
T ss_pred --------hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH---
Confidence 112334568999999999987531 1222222211 2578999999999965443333333332
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHhhc-ccceEEeccCCCChhH
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK-GRDVYILGSANVGKSA 287 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~-g~~v~ivG~~NVGKST 287 (553)
...+ ..++.+||+++.|++++++.|.+.+. ....+--+..|+||||
T Consensus 148 ---~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 148 ---RKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp ---HHTT-CEEEECCTTTCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred ---HHcC-CEEEEecCCCCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 1223 45789999999999999998876543 3345666788999997
No 16
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.13 E-value=1.6e-10 Score=118.08 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=109.4
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec-CCccEEEecCCCCCccCCCccccHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL-SHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
.|+.+|..++|++++++..-.....-+.+.. ..+++.+...+... ..+..++||+|...+. ....+.+.|
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~-------~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~--~~~~l~~~~ 82 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKA-------GTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK--KSDVLGHSM 82 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSS-------CCCCSCEEEEEEETTTEEEEEEECCCCCCCC--TTCHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCC-------CceeeEEEEEEecCCCCeEEEEECcCCCccc--cchhHHHHH
Confidence 6788899999999999876543322222211 12346666666666 6778899999874322 113456778
Q ss_pred HHHHHHhhhcccEEEEEcccCCCChhhHHHH-HHHh--CCCCEEEEEEcccCC-CCCCChhhHHHHHHHHHhhccc-Cce
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNGSFLARI-RDLA--GANPIILVVTKVDLL-PKGTDFNCVGDWVVEATTKKKL-NVL 246 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l-~~~~--~~~pvIlVlNKiDLl-~~~~~~~~~~~~~~~~~~~~~l-~~~ 246 (553)
.......+.++|+|++|+|+.+........+ ...+ .+.|+++|+||+|+. +.......+..+ ...+ ...
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l------~~~~~~~~ 156 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEI------HKKHPELT 156 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHH------HHHCTTCC
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHH------HHhccCCC
Confidence 8888888889999999999987543222222 2222 358999999999998 333211112211 1222 345
Q ss_pred eEEEeccCCccChhhhHHHHHHhhcc
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKEKKG 272 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~~~g 272 (553)
.++.+||++|.|+++|++.|.+.++.
T Consensus 157 ~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 157 EIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 78999999999999999999876643
No 17
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.10 E-value=1.4e-10 Score=118.21 Aligned_cols=162 Identities=12% Similarity=0.002 Sum_probs=106.8
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
...+.++|..++|++++++..-.....-+.+.. ..+++.+...+.....+..++||+|... ..+.+.+.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~-------~tTr~~i~~i~~~~~~~l~l~DTpG~~~----~~~~l~~~ 75 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRP-------QTTRKRLRGILTEGRRQIVFVDTPGLHK----PMDALGEF 75 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS-------CCCCSCEEEEEEETTEEEEEEECCCCCC----CCSHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCC-------CceeEEEEEEEEeCCcEEEEecCccccc----hhhHHHHH
Confidence 346889999999999999876543221111111 1123445455555566788999988642 12344566
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCce
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVL 246 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (553)
|.+....++.++|++++|+|+++........+...+ .+.|+++|+||+|+..... . +.++..+ . .++.
T Consensus 76 ~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~-~~~~~~~----~-~~~~ 147 (301)
T 1wf3_A 76 MDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--E-AMKAYHE----L-LPEA 147 (301)
T ss_dssp HHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--H-HHHHHHH----T-STTS
T ss_pred HHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH--H-HHHHHHH----h-cCcC
Confidence 777778888899999999999875433333332222 2689999999999975421 0 2222211 1 3445
Q ss_pred eEEEeccCCccChhhhHHHHHHhhc
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
.++.+||+++.|+++|++.|.+.++
T Consensus 148 ~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 148 EPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp EEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 6899999999999999999987554
No 18
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.06 E-value=5.6e-11 Score=128.01 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=94.8
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
+...++..+|..++|++++++..-.....++.+....| ++.+...+...+....++||+|...+ . ...
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT-------~d~~~~~i~~~g~~v~liDT~G~~~~----~-~~v 289 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTT-------RDVVESQLVVGGIPVQVLDTAGIRET----S-DQV 289 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCC-------HHHHHHEEEETTEEEEECC----------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCee-------EEEEEEEEEECCEEEEEEECCccccc----h-hHH
Confidence 34457899999999999999865321111111111111 24444455566666789999886321 1 112
Q ss_pred HHH-HHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCcee
Q 008807 169 DEL-REKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLS 247 (553)
Q Consensus 169 e~~-~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (553)
+.+ .+.....+..+|+||+|+|+++........+...+..+|+++|+||+|+.+.... ..+.++ .....
T Consensus 290 e~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~-~~~~~~---------~~~~~ 359 (462)
T 3geh_A 290 EKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLI-TSLEYP---------ENITQ 359 (462)
T ss_dssp ---------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGS-TTCCCC---------TTCCC
T ss_pred HHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhh-HHHHHh---------ccCCc
Confidence 222 1223344678999999999998665554555555567899999999999764321 111111 12246
Q ss_pred EEEeccCCccChhhhHHHHHHhhc
Q 008807 248 VHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 248 vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
++.+||+++.|+++|++.|.+...
T Consensus 360 ~i~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 360 IVHTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999987654
No 19
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.00 E-value=6.3e-10 Score=102.98 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=97.4
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l 167 (553)
+..++..+|...+|++++++..-... +..... ....+.........+ ....++||+|...|...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~-------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----- 70 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYD-------PTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF----- 70 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS--CCSCCC-------TTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC-----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCCCCC-------CCccccEEEEEEECCEEEEEEEEeCCCchhhhHH-----
Confidence 34578888999999999987654211 111100 011133344444433 23468999986544211
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATT 239 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~ 239 (553)
.......+|.+++|+|+.+.. ..+...+.... .+.|+++|+||+|+...... .....++.
T Consensus 71 -------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----- 138 (181)
T 3t5g_A 71 -------PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA----- 138 (181)
T ss_dssp -------CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----
T ss_pred -------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----
Confidence 112356799999999998743 12222333322 26899999999999654322 22233332
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHhhcccceEEeccCCCChhH
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSA 287 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKST 287 (553)
...+ ..++.+||+++.|++++++.|.+...... |..++||||
T Consensus 139 -~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~----~~~~~gkss 180 (181)
T 3t5g_A 139 -ESWN-AAFLESSAKENQTAVDVFRRIILEAEKMD----GACSQGKSS 180 (181)
T ss_dssp -HHTT-CEEEECCTTSHHHHHHHHHHHHHHHHTC---------CCBSC
T ss_pred -HHhC-CcEEEEecCCCCCHHHHHHHHHHHHHHhc----CCcccCcCC
Confidence 2233 36889999999999999999887654432 678889986
No 20
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.00 E-value=1.8e-09 Score=103.57 Aligned_cols=172 Identities=13% Similarity=0.027 Sum_probs=100.7
Q ss_pred cccccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEE-ecCCccEEEecCCCCCccCCCcccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCR-LLSHGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~-~l~~~~~~~dTaG~vgf~~~~~~~l 167 (553)
+..++..+|...+|++++++..-... ...+..... ..++.....+. ..+....++||+|... .. .+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~~l~DtpG~~~-~~-~~~~~ 98 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPG-------RTQHINYFSVGPAAEPVAHLVDLPGYGY-AE-VPGAA 98 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCC-------SCCCEEEEEESCTTSCSEEEEECCCCCS-SC-CCSTH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCC-------cccceEEEEecCCCCCcEEEEcCCCCCc-cc-CChhh
Confidence 34578899999999999998776542 122221111 11233333333 2345678999988421 11 11122
Q ss_pred HHHHHHHHHHhhhc---ccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc-
Q 008807 168 ADELREKLSHLRRE---KALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK- 241 (553)
Q Consensus 168 ~e~~~~~l~~~~~~---adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~- 241 (553)
.+.+...+...+.. +|+|++|+|+.+........+...+ ...|+++|+||+|+.+.... ....+.+.+.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~-~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 99 KAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQES-INALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhH-HHHHHHHHHHHHhhh
Confidence 44555544444443 7889999999875433333333332 36899999999999864321 11111111111111
Q ss_pred ---ccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 242 ---KLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 242 ---~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
......++.+||+++.|+++|++.|.+.+.
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 013357899999999999999999877553
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.96 E-value=1.4e-09 Score=98.30 Aligned_cols=155 Identities=17% Similarity=0.076 Sum_probs=96.3
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
++..+|...+|++++++..-....-++..... ...+.....+...+....++||+|...+. .....+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~ 70 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPG-------VTRDLKEGVVETDRGRFLLVDTGGLWSGD-----KWEKKIQ 70 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC------------------CCEEEEEEETTEEEEEEECGGGCSSS-----SCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCC-------ceecceEEEEEeCCceEEEEECCCCCCcc-----chHHHHH
Confidence 46677888999999987654332111111111 11244555555555667899998754221 1244566
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEE
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHL 250 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~ 250 (553)
.........+|++++|+|+.+........+...+ .+.|+++|+||+|+.... ....++ ..++...++.
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---~~~~~~-------~~~~~~~~~~ 140 (161)
T 2dyk_A 71 EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE---LYLGPL-------YGLGFGDPIP 140 (161)
T ss_dssp HHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG---GGCGGG-------GGGSSCSCEE
T ss_pred HHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch---HhHHHH-------HhCCCCCeEE
Confidence 6666667899999999999885433322332222 368999999999997542 112222 1234336799
Q ss_pred eccCCccChhhhHHHHHHh
Q 008807 251 TSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 251 iSAk~g~gi~~Ll~~L~~~ 269 (553)
+||+++.|++++++.|.+.
T Consensus 141 ~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 141 TSSEHARGLEELLEAIWER 159 (161)
T ss_dssp CBTTTTBSHHHHHHHHHHH
T ss_pred EecccCCChHHHHHHHHHh
Confidence 9999999999999888754
No 22
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.94 E-value=1.5e-09 Score=100.55 Aligned_cols=154 Identities=13% Similarity=0.064 Sum_probs=96.3
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH-H
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD-E 170 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e-~ 170 (553)
.++..+|..++|++++++.......-++.+... ..++...+.+...+....++||+|...+. ..... .
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~~~~~ 73 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG-------TTRDVLREHIHIDGMPLHIIDTAGLREAS----DEVERIG 73 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTT-------CCCSCEEEEEEETTEEEEEEECCCCSCCS----SHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCC-------ceeceeeEEEEECCeEEEEEECCCcccch----hHHHHHH
Confidence 367888999999999998775432211211111 12356667777666567899998863221 11111 1
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh----hhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG----SFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNV 245 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~ 245 (553)
+... .....++|++++|+|+++... .+...+.... .+.|+++|+||+||....... .....
T Consensus 74 ~~~~-~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-------------~~~~~ 139 (172)
T 2gj8_A 74 IERA-WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM-------------SEVNG 139 (172)
T ss_dssp HHHH-HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE-------------EEETT
T ss_pred HHHH-HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhh-------------hhccC
Confidence 2222 234578999999999987542 2223333322 258999999999996432111 01112
Q ss_pred eeEEEeccCCccChhhhHHHHHHhh
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..++.+||+++.|+++|++.|.+.+
T Consensus 140 ~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 140 HALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999887643
No 23
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.93 E-value=7.4e-09 Score=107.75 Aligned_cols=162 Identities=16% Similarity=0.126 Sum_probs=98.9
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
+...+..+|+.++|++++++......+ .+....|.|. +.....+........++||+|...+ ..+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~-------~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~ 234 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTR-------GINVGQFEDGYFRYQIIDTPGLLDR---PISERNE 234 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSS-------CEEEEEEEETTEEEEEEECTTTSSS---CSTTSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeee-------ceeEEEEEecCceEEEEeCCCcccc---chhhhhH
Confidence 344788999999999999988765432 1111223332 5555555554455789999876432 1111111
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC---h----hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN---G----SFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~---~----s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
-....+......+|.+++|+|+.+.. . .+...+.....+.|+++|+||+|+..... .....++. . .
T Consensus 235 ~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~-~~~~~~~~----~--~ 307 (357)
T 2e87_A 235 IEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN-IKRLEKFV----K--E 307 (357)
T ss_dssp HHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH-HHHHHHHH----H--H
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHH-HHHHHHHH----H--h
Confidence 11223334445689999999988653 1 22333333334789999999999975321 11122221 1 1
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.+ ..++.+||++|.|+++|++.|.+.+
T Consensus 308 ~~-~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 308 KG-LNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp TT-CCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred cC-CCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 22 4578999999999999999887654
No 24
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.93 E-value=2.2e-09 Score=100.45 Aligned_cols=170 Identities=20% Similarity=0.120 Sum_probs=95.2
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|...+|++++++..-... ..|.+.. ..+.....+...+ ....++||+|...|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----- 78 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----------GVDFKIRTIELDGKTIKLQIWDTAGQERF----- 78 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCS----------SEEEEEEEEEETTEEEEEEEEEECCSGGG-----
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc----------cceEEEEEEEECCEEEEEEEEECCCcHhh-----
Confidence 345588999999999999998654211 1111110 1133444444443 24678899874322
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCCCh-hhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGTDF-NCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~-~~~~~~~~~~ 237 (553)
.......+..+|++++|+|+.+.. ..++..+.... .+.|+++|+||+|+.+..... ....++.
T Consensus 79 -------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~--- 148 (196)
T 3tkl_A 79 -------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA--- 148 (196)
T ss_dssp -------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHH---
T ss_pred -------hhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHH---
Confidence 122333456899999999998743 12233333332 257999999999997654322 2222221
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHhhcccceEEeccCCCChhH
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSA 287 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKST 287 (553)
...+ ..++.+||+++.|++++++.|.+....+.----..++++||+
T Consensus 149 ---~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~~~~~~~~s~ 194 (196)
T 3tkl_A 149 ---DSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSN 194 (196)
T ss_dssp ---HHTT-CCEEEECTTTCTTHHHHHHHHHHHHHHHC-------------
T ss_pred ---HHcC-CcEEEEeCCCCCCHHHHHHHHHHHHHHHhccccccCCCccCC
Confidence 2223 468899999999999998888765432211112234555554
No 25
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.88 E-value=6.3e-09 Score=97.59 Aligned_cols=158 Identities=11% Similarity=0.037 Sum_probs=95.5
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...++..+|..++|++++++.......--+ ....|. ......+........++||+|...|
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~--~~~~t~-------~~~~~~~~~~~~~~~i~Dt~G~~~~---------- 76 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSK--HITATV-------GYNVETFEKGRVAFTVFDMGGAKKF---------- 76 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC------CCCCCS-------SEEEEEEEETTEEEEEEEECCSGGG----------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccc--cccccc-------ceeEEEEEeCCEEEEEEECCCCHhH----------
Confidence 344788899999999999987654321110 000111 2333344455556789999885322
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHhC------------CCCEEEEEEcccCCCCCCChhhHHHHHH
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLAG------------ANPIILVVTKVDLLPKGTDFNCVGDWVV 235 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~~------------~~pvIlVlNKiDLl~~~~~~~~~~~~~~ 235 (553)
.......+..+|++|+|+|+.+... .....+..+.. +.|+++|+||+||..... ...+.+.+.
T Consensus 77 --~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~ 153 (199)
T 4bas_A 77 --RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-AAELVEILD 153 (199)
T ss_dssp --GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-HHHHHHHHT
T ss_pred --HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-HHHHHHHhc
Confidence 2223344678999999999998642 12222222211 679999999999976532 233322221
Q ss_pred HHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 236 EATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 236 ~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
........+ ..++.+||+++.|++++++.|.+..
T Consensus 154 ~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 154 LTTLMGDHP-FVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HHHHHTTSC-EEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred chhhccCCe-eEEEEeeCCCccCHHHHHHHHHHHH
Confidence 111101223 4689999999999999998887643
No 26
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.87 E-value=2.1e-09 Score=98.82 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=94.3
Q ss_pred cccccccccCCCcccccCccccccCCCCC--cccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCC
Q 008807 88 KDKVLKVNSAVASCYGCGAPLQTSESDAP--GYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGK 163 (553)
Q Consensus 88 ~~~~~~~~~~~~~C~GCG~~LQ~~d~~~~--GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~ 163 (553)
.....++..+|...+|++++++..-.... .|.+.. ..+.....+...+ ....++||+|...|...
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~- 74 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI----------GVDFKIRTVEINGEKVKLQIWDTAGQERFRTI- 74 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTB----------SEEEEEEEEEETTEEEEEEEEEETTGGGCSSC-
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCc----------eeEEEEEEEEECCEEEEEEEEcCCCchhhhhh-
Confidence 34556889999999999999987654311 111110 1133444444443 34678899885333211
Q ss_pred ccccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhCCCCEEEEEEcccCCCCCCC-hhhHHHHHHHH
Q 008807 164 QFVSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAGANPIILVVTKVDLLPKGTD-FNCVGDWVVEA 237 (553)
Q Consensus 164 ~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~ 237 (553)
.......+|++++|+|+.+... .++..+.....+.|+++|+||+|+.+.... ......+.
T Consensus 75 -----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~--- 140 (181)
T 3tw8_B 75 -----------TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFA--- 140 (181)
T ss_dssp -----------CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHH---
T ss_pred -----------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHH---
Confidence 2233568999999999987431 123333333346899999999998764422 22222221
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 141 ---~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 141 ---GQMG-IQLFETSAKENVNVEEMFNCITEL 168 (181)
T ss_dssp ---HHHT-CCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---HHcC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 1122 368899999999999999887653
No 27
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.87 E-value=2e-08 Score=97.18 Aligned_cols=169 Identities=12% Similarity=0.040 Sum_probs=95.1
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
+..++..+|..++|++++++..-....- ..+..+.|. +.....+........++||+|...+.... ....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~-------~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~ 97 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTK-------NLYVGHFDHKLNKYQIIDTPGLLDRAFEN--RNTI 97 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC------------CEEEEEEEETTEEEEEEECTTTTTSCGGG--CCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcce-------eeeeeeeecCCCeEEEEECCCCcCcccch--hhhH
Confidence 3457889999999999999876543211 111112222 45555555545567899998863221100 1011
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh----hhHHHHHHHh---CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG----SFLARIRDLA---GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~----s~~~~l~~~~---~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.+ ..+......+|++|+|+|+++... .....+..+. .+.|+++|+||+|+...........+... .+....
T Consensus 98 ~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~ 175 (228)
T 2qu8_A 98 EM-TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNV 175 (228)
T ss_dssp HH-HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHC
T ss_pred HH-HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhc
Confidence 12 223334567899999999987532 1112222222 26899999999999865432221111111 111111
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.....++.+||++|.|++++++.|.+..
T Consensus 176 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 176 KNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp CSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 1124688999999999999998886643
No 28
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.87 E-value=2.3e-09 Score=114.83 Aligned_cols=189 Identities=12% Similarity=0.058 Sum_probs=108.9
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...++.++|..++|++++++.......-.+.+.... +++.....+...+....++||+|...+....+.. .+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gt-------T~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~-~e 250 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGT-------TRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT-VE 250 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------------CCEEEEETTEEEEESSCSCC------------C
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCC-------cCCceEEEEEECCEEEEEEECCCCccccccchhh-HH
Confidence 345889999999999999988654432222221111 2355566777766667788998863222110000 00
Q ss_pred HHH-HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhhcccCc
Q 008807 170 ELR-EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTKKKLNV 245 (553)
Q Consensus 170 ~~~-~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~~~l~~ 245 (553)
.+. .+....+..+|++++|+|+.+........+...+ .++|+++|+||+|+..... ....+.+.+.+.+ ..+..
T Consensus 251 ~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~ 328 (439)
T 1mky_A 251 KYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKL--YFIDY 328 (439)
T ss_dssp CSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC--GGGTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHh--ccCCC
Confidence 010 1122345688999999999875432222232222 4689999999999986432 1122222221111 12233
Q ss_pred eeEEEeccCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhh
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++.+||++|.|+++|++.+.+....... -=+|+.+|.+++.
T Consensus 329 ~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~-------~i~t~~ln~~l~~ 371 (439)
T 1mky_A 329 SPLIFTSADKGWNIDRMIDAMNLAYASYTT-------KVPSSAINSALQK 371 (439)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHHHTC-------CCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhhcc-------cCCHHHHHHHHHH
Confidence 568999999999999999988765443221 1178999999976
No 29
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.86 E-value=2.1e-09 Score=102.16 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=92.9
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|...+|++++++..-... +.|.+.. ..+.....+...+ ....++||+|...|.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---- 83 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----------GIDFKIKTVDINGKKVKLQLWDTAGQERFR---- 83 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCC----------SCCEEEEEEEETTEEEEEEEECCTTGGGGT----
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc----------cceEEEEEEEECCEEEEEEEEeCCCcHHHH----
Confidence 345588999999999999997654211 1222110 1133444444443 346789998743221
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC-CCCEEEEEEcccCCCCCCChhhHHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG-ANPIILVVTKVDLLPKGTDFNCVGDWVVEAT 238 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~-~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~ 238 (553)
......+..+|++++|+|+.+.. ..++..+..... ..|+++|+||+|+...........++.
T Consensus 84 --------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---- 151 (213)
T 3cph_A 84 --------TITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA---- 151 (213)
T ss_dssp --------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHH----
T ss_pred --------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHH----
Confidence 11223356899999999998753 123333333322 579999999999954433333333332
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+..
T Consensus 152 --~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 152 --KELG-IPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp --HHHT-CCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred --HHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1122 3588999999999999998886543
No 30
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.85 E-value=1.3e-08 Score=95.14 Aligned_cols=153 Identities=13% Similarity=0.046 Sum_probs=95.6
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~ 166 (553)
++..++..+|..++|++++++..-... ..|.+ |. ......+........++||+|.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-----t~-------~~~~~~~~~~~~~~~l~Dt~G~---------- 77 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIP-----TV-------GFNMRKITKGNVTIKLWDIGGQ---------- 77 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC-----CC-------SEEEEEEEETTEEEEEEEECCS----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCC-----CC-------ceeEEEEEeCCEEEEEEECCCC----------
Confidence 345588899999999999997664221 12221 11 2223334444556789999874
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHh
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATT 239 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~ 239 (553)
+.+.......+..+|++++|+|+.+... .....+..+. .+.|+++|+||+|+.... ....+.+. ..
T Consensus 78 --~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~----~~ 150 (188)
T 1zd9_A 78 --PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEK----MN 150 (188)
T ss_dssp --HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHH----TT
T ss_pred --HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-CHHHHHHH----hC
Confidence 2344445555678999999999987531 1222233322 468999999999997643 22222221 11
Q ss_pred hcc--cCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 240 KKK--LNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 240 ~~~--l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
... .....++.+||+++.|++++++.|.+.+
T Consensus 151 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 151 LSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred hhhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 111 1124578999999999999999887654
No 31
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.85 E-value=9e-09 Score=95.66 Aligned_cols=155 Identities=12% Similarity=0.053 Sum_probs=97.9
Q ss_pred cccccccCCCcccccCccccccCCCCC-cccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAP-GYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~-GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
+..++..+|...+|++++++..-.... .|.+ |. ......+........++||+|.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~-------~~~~~~~~~~~~~~~~~Dt~G~------------ 72 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISP-----TL-------GFNIKTLEHRGFKLNIWDVGGQ------------ 72 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCC-----CS-------SEEEEEEEETTEEEEEEEECCS------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccc-----cC-------ccceEEEEECCEEEEEEECCCC------------
Confidence 445889999999999999987654331 1211 11 2334445555556789999874
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
+.+..........+|++++|+|+.+... .....+..+. .+.|+++|+||+|+.... ....+.+.+.. ....
T Consensus 73 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~-~~~~ 150 (186)
T 1ksh_A 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL-SCNAIQEALEL-DSIR 150 (186)
T ss_dssp HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTG-GGCC
T ss_pred HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC-CHHHHHHHhCh-hhcc
Confidence 2344444556778999999999988642 1112222222 358999999999997643 22222222100 0001
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
..+ ..++.+||+++.|++++++.|.+...
T Consensus 151 ~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 151 SHH-WRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp SSC-EEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCc-eEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 112 46889999999999999998877554
No 32
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.85 E-value=1.5e-08 Score=94.44 Aligned_cols=166 Identities=14% Similarity=-0.002 Sum_probs=95.2
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...++..+|...+|++++++..-......+.+.... .++.. .........++||+|... .. .+....+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-------t~~~~---~~~~~~~~~i~Dt~G~~~-~~-~~~~~~~ 89 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGK-------TRSIN---FYLVNSKYYFVDLPGYGY-AK-VSKKERM 89 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCC-------CCCEE---EEEETTTEEEEECCCBSS-SC-CCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCC-------ccCeE---EEEECCcEEEEECCCCcc-cc-CChhhHH
Confidence 344788899999999999977654332222111100 11221 222345678999987421 11 1111233
Q ss_pred HHHHHHHHhhh---cccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccC
Q 008807 170 ELREKLSHLRR---EKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLN 244 (553)
Q Consensus 170 ~~~~~l~~~~~---~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~ 244 (553)
.+......... .+|+|++|+|+.+........+...+ .+.|+++|+||+|+.+... .....+...+.+ ...+
T Consensus 90 ~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-~~~~~~~~~~~~--~~~~ 166 (195)
T 3pqc_A 90 LWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSE-RAKKLEEHRKVF--SKYG 166 (195)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGG-HHHHHHHHHHHH--HSSC
T ss_pred HHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHH-HHHHHHHHHHHH--hhcC
Confidence 44444444443 44999999999876433222222222 3689999999999985432 111111111111 1223
Q ss_pred ceeEEEeccCCccChhhhHHHHHHhh
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...++.+||+++.|++++++.|.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999987654
No 33
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.85 E-value=3.2e-09 Score=96.85 Aligned_cols=154 Identities=10% Similarity=0.030 Sum_probs=95.2
Q ss_pred cccccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
+..++..+|...+|++++++...... .-|.+ |. ......+........++||+|...|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~-------~~~~~~~~~~~~~~~~~Dt~G~~~~--------- 64 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIP-----TI-------GFNVETVTYKNLKFQVWDLGGLTSI--------- 64 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCC-----CS-------SEEEEEEEETTEEEEEEEECCCGGG---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCC-----cC-------ccceEEEEECCEEEEEEECCCChhh---------
Confidence 34578889999999999998763211 11111 11 3344455555566789999885322
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
.......+..+|++++|+|+.+.. ......+..+. .+.|+++|+||+|+.+... ...+.+.+... ...
T Consensus 65 ---~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~-~~~ 139 (171)
T 1upt_A 65 ---RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMANSLGLP-ALK 139 (171)
T ss_dssp ---GGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGG-GCT
T ss_pred ---hHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC-HHHHHHHhCch-hcc
Confidence 122334466899999999998864 22222333332 3689999999999976532 22222221000 001
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 140 ~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 140 DRK-WQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp TSC-EEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCc-eEEEECcCCCCcCHHHHHHHHHHHH
Confidence 122 3688999999999999999887654
No 34
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.84 E-value=1.6e-08 Score=91.35 Aligned_cols=148 Identities=18% Similarity=0.128 Sum_probs=90.9
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|...+|++++++..-... ..|.+. ..+.....+...+. ...++||+|..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~~~l~D~~G~~---------- 63 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-----------KADSYRKKVVLDGEEVQIDILDTAGQE---------- 63 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCTT-----------CCEEEEEEEEETTEEEEEEEEECCC------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCCCCCCC-----------cceEEEEEEEECCEEEEEEEEECCCcc----------
Confidence 467788999999999988764321 111111 11333344444332 45789998742
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhC--CCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAG--ANPIILVVTKVDLLPKGT-DFNCVGDWVVEATT 239 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~--~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~ 239 (553)
.+..........+|.+++|+|+.+... .+...+..... +.|+++|+||+|+..... ......++.
T Consensus 64 --~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----- 136 (168)
T 1u8z_A 64 --DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA----- 136 (168)
T ss_dssp ---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----
T ss_pred --hhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----
Confidence 223334445668999999999987531 22233333333 689999999999975432 223333332
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 137 -~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 137 -DQWN-VNYVETSAKTRANVDKVFFDLMRE 164 (168)
T ss_dssp -HHHT-CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -HHcC-CeEEEeCCCCCCCHHHHHHHHHHH
Confidence 1122 368899999999999999888654
No 35
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.84 E-value=6.9e-09 Score=97.05 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=95.9
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
+..++..+|..++|++++++...... .+. .....| .......+...+....++||+|...|.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~-~~~~~t-------~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------- 81 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN-AQS-QNILPT-------IGFSIEKFKSSSLSFTVFDMSGQGRYR--------- 81 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG-GCC-SSCCCC-------SSEEEEEEECSSCEEEEEEECCSTTTG---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC-CCC-CCcCCc-------cceeEEEEEECCEEEEEEECCCCHHHH---------
Confidence 34578899999999999998765432 011 111111 134445555555677899998853221
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC--hh---hHHHHHHHh----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhh
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN--GS---FLARIRDLA----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTK 240 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~--~s---~~~~l~~~~----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~ 240 (553)
......+..+|++++|+|+.+.. .. ++..+.... .+.|+++|+||+|+.... ....+.+++ ..
T Consensus 82 ---~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~----~~ 153 (190)
T 2h57_A 82 ---NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV-TSVKVSQLL----CL 153 (190)
T ss_dssp ---GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC-CHHHHHHHH----TG
T ss_pred ---HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC-CHHHHHHHh----Ch
Confidence 11234467899999999998753 11 222222211 367999999999997543 233333332 11
Q ss_pred ccc--CceeEEEeccCCccChhhhHHHHHHhh
Q 008807 241 KKL--NVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 241 ~~l--~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..+ ....++.+||+++.|++++++.|.+..
T Consensus 154 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 154 ENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp GGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred hhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 111 124689999999999999999887654
No 36
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.82 E-value=2.9e-09 Score=99.96 Aligned_cols=153 Identities=16% Similarity=0.105 Sum_probs=94.5
Q ss_pred ccccccccCCCcccccCccccccCCCCC--cccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAP--GYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~--GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~ 164 (553)
.+..++..+|..++|++++++..-.... .|.+. ..+.........+. ...++||+|...|
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----- 84 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPT-----------VFENFSHVMKYKNEEFILHLWDTAGQEEY----- 84 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCC-----------SEEEEEEEEEETTEEEEEEEEEECCSGGG-----
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCe-----------eeeeeEEEEEECCEEEEEEEEECCCcHHH-----
Confidence 4456889999999999999987543211 11111 11333333333332 2478999875322
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC------hhhHHHHHHHhCCCCEEEEEEcccCCCCC---CChhhHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN------GSFLARIRDLAGANPIILVVTKVDLLPKG---TDFNCVGDWVV 235 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~------~s~~~~l~~~~~~~pvIlVlNKiDLl~~~---~~~~~~~~~~~ 235 (553)
..........+|++++|+|+.+.. ..+...+.....+.|+++|+||+||.... .......++.
T Consensus 85 -------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~- 156 (194)
T 3reg_A 85 -------DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC- 156 (194)
T ss_dssp -------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-
T ss_pred -------HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHH-
Confidence 222333466899999999998753 12333344334568999999999998542 1222233332
Q ss_pred HHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 236 EATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 236 ~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..++...++.+||+++.|++++++.|.+..
T Consensus 157 -----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 157 -----QKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp -----HHHTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----HhcCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 223333488999999999999998887643
No 37
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.82 E-value=1.6e-09 Score=108.75 Aligned_cols=161 Identities=13% Similarity=0.097 Sum_probs=100.5
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCc-cccH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQ-FVSA 168 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~-~~l~ 168 (553)
.++..+|..++|++++++...... .|+.+ ..+.+.....+...+....++||+|...|..... ....
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~----------g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 73 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWA----------GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD 73 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECT----------TSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCC----------CeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHH
Confidence 467888999999999998765432 12211 1122556666666666778999999865542111 1223
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCChh--hHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCce
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNGS--FLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVL 246 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~s--~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (553)
+.+..... ....+|++++|+|++++... +...+.. .+.|+++|+||+|+............+ . ..++ .
T Consensus 74 e~i~~~~~-~~~~~d~ii~VvD~~~~~~~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l-~-----~~lg-~ 143 (274)
T 3i8s_A 74 EQIACHYI-LSGDADLLINVVDASNLERNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDAL-S-----ARLG-C 143 (274)
T ss_dssp HHHHHHHH-HHTCCSEEEEEEEGGGHHHHHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHH-H-----HHHT-S
T ss_pred HHHHHHHH-hhcCCCEEEEEecCCChHHHHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHH-H-----HhcC-C
Confidence 33333222 23689999999999874321 2223333 268999999999987543211122222 1 2233 4
Q ss_pred eEEEeccCCccChhhhHHHHHHhhcc
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKEKKG 272 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~~~g 272 (553)
.++.+||++|.|+++|++.|.+....
T Consensus 144 ~~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 144 PVIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp CEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999875543
No 38
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.81 E-value=9.4e-09 Score=96.93 Aligned_cols=151 Identities=18% Similarity=0.115 Sum_probs=94.0
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~ 164 (553)
.+..++..+|...+|++++++..-... ..|.+. ..+.....+...+. ...++||+|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------ 74 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-----------KADSYRKKVVLDGEEVQIDILDTAGQED------ 74 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTT-----------CCEEEEEEEEETTEEEEEEEEECCCTTC------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-----------cceEEEEEEEECCEEEEEEEEcCCChhh------
Confidence 345688999999999999998764221 111111 11333444444332 467899987421
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhC--CCCEEEEEEcccCCCCCC-ChhhHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAG--ANPIILVVTKVDLLPKGT-DFNCVGDWVVE 236 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~--~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~ 236 (553)
+..........+|.+++|+|+.+... .+...+..... +.|+++|+||+|+.+... ......++.
T Consensus 75 ------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-- 146 (206)
T 2bov_A 75 ------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-- 146 (206)
T ss_dssp ------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH--
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH--
Confidence 12223344567899999999987531 22333443333 689999999999976432 233333332
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||++|.|++++++.|.+.
T Consensus 147 ----~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 147 ----EQWN-VNYVETSAKTRANVDKVFFDLMRE 174 (206)
T ss_dssp ----HHHT-CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred ----HHhC-CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 1123 368899999999999998887653
No 39
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.81 E-value=3e-09 Score=105.72 Aligned_cols=158 Identities=13% Similarity=0.060 Sum_probs=97.5
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCc-cccHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQ-FVSAD 169 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~-~~l~e 169 (553)
++..+|..++|++++++...... .|+.+ ..+.+.....+...+....++||+|...+..... ....+
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~p----------g~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e 72 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWP----------GVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDE 72 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECT----------TSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCC----------CceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHH
Confidence 56788999999999998765431 22221 1122566677777666788999999854432100 01223
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
.+...... ...+|+|++|+|++++... ......+. .+.|+++|+||+|+............ +. ..++ ..+
T Consensus 73 ~i~~~~~~-~~~~d~vi~VvDas~~~~~-~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~-l~-----~~lg-~~v 143 (256)
T 3iby_A 73 QIAAQSVI-DLEYDCIINVIDACHLERH-LYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEK-LE-----SLLG-CSV 143 (256)
T ss_dssp HHHHHHHH-HSCCSEEEEEEEGGGHHHH-HHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHH-HH-----HHHC-SCE
T ss_pred HHHHHHHh-hCCCCEEEEEeeCCCchhH-HHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHH-HH-----HHcC-CCE
Confidence 33222221 2689999999999874321 11111221 26899999999999754422222222 21 2233 468
Q ss_pred EEeccCCccChhhhHHHHHHh
Q 008807 249 HLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~ 269 (553)
+.+||++|.|+++|++.|.+.
T Consensus 144 i~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 144 IPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EECBGGGTBSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 999999999999999998765
No 40
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=8.4e-09 Score=96.19 Aligned_cols=155 Identities=9% Similarity=0.043 Sum_probs=93.8
Q ss_pred ccccccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCcccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l 167 (553)
++..++..+|..++|++++++...... ..|.+ |. ......+...+....++||+|...|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~-------~~~~~~~~~~~~~~~i~Dt~G~~~~-------- 73 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TI-------GSNVEEIVINNTRFLMWDIGGQESL-------- 73 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-----CS-------CSSCEEEEETTEEEEEEECCC------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcC-----CC-------ccceEEEEECCEEEEEEECCCCHhH--------
Confidence 345688999999999999998765322 12221 11 1122334444556789999875322
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTK 240 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~ 240 (553)
..........+|++++|+|+++.. ......+..+. .+.|+++|+||+|+.... ....+.+++... ..
T Consensus 74 ----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~-~~ 147 (187)
T 1zj6_A 74 ----RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQFLKLT-SI 147 (187)
T ss_dssp ----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTGG-GC
T ss_pred ----HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC-CHHHHHHHhChh-hh
Confidence 222233456899999999999864 12222222222 468999999999997543 233333332100 00
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+..
T Consensus 148 ~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 148 KDHQ-WHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp CSSC-EEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCC-cEEEEccCCCCcCHHHHHHHHHHHH
Confidence 1122 4688999999999999999887654
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.81 E-value=1.7e-08 Score=92.53 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=94.7
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|..++|++++++..-... ..|.+. . ..+.....+...+. ...++||+|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~i~Dt~G~~-------- 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHT-----I-----GVEFLNKDLEVDGHFVTMQIWDTAGQE-------- 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----C-----C-----SEEEEEEEEEETTEEEEEEEEECCCCG--------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-----e-----eeeEEEEEEEECCEEEEEEEEeCCCch--------
Confidence 44578899999999999998753211 111111 0 01233344444332 46789998742
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVV 235 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~ 235 (553)
.+..........+|++++|+|+.+.. ..+...+.... .+.|+++|+||+|+.......+...++..
T Consensus 68 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 143 (177)
T 1wms_A 68 ----RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR 143 (177)
T ss_dssp ----GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH
T ss_pred ----hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH
Confidence 23334455677899999999998753 22334443332 35799999999999744433344444321
Q ss_pred HHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 236 EATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 236 ~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
. .....++.+||+++.|++++++.|.+.
T Consensus 144 -----~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (177)
T 1wms_A 144 -----D-NGDYPYFETSAKDATNVAAAFEEAVRR 171 (177)
T ss_dssp -----H-TTCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----h-cCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 122468999999999999999888654
No 42
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.81 E-value=1.3e-08 Score=92.12 Aligned_cols=149 Identities=12% Similarity=0.056 Sum_probs=90.5
Q ss_pred ccccCCCcccccCccccccCCC-CCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESD-APGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~-~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
++..+|..++|++++++..-.. .+.|.+ |. ......+........++||+|.. .+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~-----t~-------~~~~~~~~~~~~~~~i~Dt~G~~------------~~ 57 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIP-----TI-------GFNVETVEYKNISFTVWDVGGQD------------KI 57 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCC-----CS-------SCCEEEEECSSCEEEEEECCCCG------------GG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccC-----cC-------ceeEEEEEECCEEEEEEEcCCCh------------hh
Confidence 3567788899999988765321 111211 11 22233444445667899998752 23
Q ss_pred HHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhccc-
Q 008807 172 REKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKL- 243 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l- 243 (553)
+.........+|++++|+|+.+.. ......+..+. .+.|+++|+||+|+.... ....+.+. ......
T Consensus 58 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~----~~~~~~~ 132 (164)
T 1r8s_A 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDK----LGLHSLR 132 (164)
T ss_dssp HHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHH----TTGGGCS
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC-CHHHHHHH----hCccccc
Confidence 334455577999999999998863 11222233322 267999999999996543 22222222 111111
Q ss_pred -CceeEEEeccCCccChhhhHHHHHHhh
Q 008807 244 -NVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 244 -~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
....++.+||+++.|++++++.|.+..
T Consensus 133 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 133 HRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp SCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 113588999999999999999887643
No 43
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.80 E-value=3.3e-09 Score=100.92 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=90.9
Q ss_pred ccccccccCCCcccccCccccccCCC-CCcccCCchhhHhhhccCccceEEEEEEecCCcc--EEEecCCCCCccCCCcc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESD-APGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGH--MITAVGGNGGYAGGKQF 165 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~-~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~--~~~dTaG~vgf~~~~~~ 165 (553)
.+..++..+|..++|++++++..-.+ ..+...+. ..+.........+... .++||+|...|.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t----------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----- 92 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT----------VFDNYSANVMVDGKPVNLGLWDTAGLEDYD----- 92 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCC----------SEEEEEEEEECC-CEEEEEEEEECCSGGGT-----
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCe----------ecceeEEEEEECCEEEEEEEEECCCchhhH-----
Confidence 34558899999999999999544211 11111110 1133333444433333 489998853222
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCC-------------C
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGT-------------D 226 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-------------~ 226 (553)
......+..+|++++|+|+.+... .+...+.....+.|+++|+||+||.+... .
T Consensus 93 -------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 165 (204)
T 4gzl_A 93 -------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 165 (204)
T ss_dssp -------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred -------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhcccccccc
Confidence 222334678999999999987531 23334443334789999999999976431 1
Q ss_pred hhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 227 FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
......+ ...++...++.+||++|.|++++++.|.+
T Consensus 166 ~~~~~~~------~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 166 YPQGLAM------AKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HHHHHHH------HHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHH------HHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 1111111 12344456899999999999999988865
No 44
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.80 E-value=4.8e-09 Score=99.43 Aligned_cols=153 Identities=16% Similarity=0.047 Sum_probs=90.7
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
.++..+|..++|++++++....+...-+.+ |. ......+...+....++||+|...|
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~----t~-------~~~~~~~~~~~~~l~i~Dt~G~~~~------------ 82 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVP----TL-------HPTSEELTIAGMTFTTFDLGGHIQA------------ 82 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC------C----CC-------CCSCEEEEETTEEEEEEEECC----------------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccCC----CC-------CceeEEEEECCEEEEEEECCCcHhh------------
Confidence 468899999999999998776432211111 11 1122445555556789999875322
Q ss_pred HHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHH------
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEAT------ 238 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~------ 238 (553)
+.........+|.+++|+|+.+... .....+..+. .+.|+++|+||+|+.. ....+.+.+++....
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~ 161 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKG 161 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSS
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-cCCHHHHHHHhCccccccccc
Confidence 1122234568999999999988641 1122222221 3689999999999975 223344444321000
Q ss_pred ----hhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 239 ----TKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 239 ----~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
.........++.+||++|.|++++++.|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 162 SVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred ccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 000112346899999999999999988864
No 45
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.80 E-value=1.1e-08 Score=109.99 Aligned_cols=188 Identities=11% Similarity=0.101 Sum_probs=110.1
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...++..+|..+.|++++++.........+.+....| ++.....+...+....++||||+..... .....+
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt-------~~~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~e 264 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT-------RDAVDTSFTYNQQEFVIVDTAGMRKKGK--VYETTE 264 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------------CTTSEEEEETTEEEEETTGGGTTTBTT--BCCCCS
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeE-------EEEEEEEEEECCceEEEEECCCCCcCcc--cchHHH
Confidence 3457888899999999999876543222222222222 2444445555555678999988532111 111123
Q ss_pred HHHH-HHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcccCc
Q 008807 170 ELRE-KLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKKLNV 245 (553)
Q Consensus 170 ~~~~-~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~l~~ 245 (553)
.+.. ....++..+|++|+|+|+++........+...+ .++|+++|+||+||.+.... .+...+++.+.+ ..++.
T Consensus 265 ~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~ 342 (456)
T 4dcu_A 265 KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF--QFLDY 342 (456)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC--GGGTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc--ccCCC
Confidence 3332 223346789999999999875443333333222 46899999999999865432 223333332211 11233
Q ss_pred eeEEEeccCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhh
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++.+||++|.|+++|++.+.+....... .+ +++.+|.++..
T Consensus 343 ~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~------~~-~t~~ln~~l~~ 385 (456)
T 4dcu_A 343 APILFMSALTKKRIHTLMPAIIKASENHSL------RV-QTNVLNDVIMD 385 (456)
T ss_dssp SCEEECCTTTCTTGGGHHHHHHHHHHHHTC------CC-CHHHHHHHHHH
T ss_pred CCEEEEcCCCCcCHHHHHHHHHHHHHHhcc------cC-CHHHHHHHHHH
Confidence 568999999999999999988765432211 11 34567777654
No 46
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.79 E-value=9.3e-09 Score=95.00 Aligned_cols=151 Identities=18% Similarity=0.124 Sum_probs=93.3
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
..++..+|...+|++++++..-... +...... ...+.....+...+. ...++||+|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~-------t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------- 78 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEP-------TKADSYRKKVVLDGEEVQIDILDTAGQED---------- 78 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCT-------TCCEEEEEEEEETTEEEEEEEEECCCTTC----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCC-------ccceEEEEEEEECCEEEEEEEEECCCCcc----------
Confidence 3578899999999999988764321 1111100 111334444444332 467899987421
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhC--CCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAG--ANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~--~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
+..........+|.+++|+|+.+... .++..+..... +.|+++|+||+|+.+... ......++.
T Consensus 79 --~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------ 150 (187)
T 2a9k_A 79 --YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA------ 150 (187)
T ss_dssp --CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH------
T ss_pred --cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH------
Confidence 12223344568899999999987531 22333443333 689999999999975432 223333332
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 151 ~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 151 EQWN-VNYVETSAKTRANVDKVFFDLMRE 178 (187)
T ss_dssp HHTT-CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcC-CeEEEeCCCCCCCHHHHHHHHHHH
Confidence 1233 468899999999999999888654
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.79 E-value=1.3e-08 Score=93.57 Aligned_cols=153 Identities=18% Similarity=0.089 Sum_probs=90.0
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|...+|++++++..-... ++.+.+.. ..+.........+. ...++||+|..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~---------~~~~~~~~~~~~~~~~~~~~~Dt~G~~-------- 71 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV---------GIDFRNKVLDVDGVKVKLQMWDTAGQE-------- 71 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCC---------SCEEEEEEEEETTEEEEEEEEECCCC---------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCce---------eeEEEEEEEEECCEEEEEEEEeCCCcH--------
Confidence 34578889999999999997653221 11111110 01222222233322 45788998742
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEAT 238 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~ 238 (553)
.+..........+|++++|+|+.+.. ..++..+.... .+.|+++|+||+|+..... ......++.
T Consensus 72 ----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---- 143 (180)
T 2g6b_A 72 ----RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLA---- 143 (180)
T ss_dssp -----------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHH----
T ss_pred ----HHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHH----
Confidence 23333455567899999999998753 12233333332 3689999999999986432 222222322
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+..
T Consensus 144 --~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 144 --KEYG-LPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp --HHHT-CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1122 3688999999999999998887644
No 48
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.79 E-value=1.3e-08 Score=108.92 Aligned_cols=188 Identities=11% Similarity=0.056 Sum_probs=109.1
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...++..+|..+.|++++++..-.+..-.+.+.... +++.+...+...+....++||||...+.... ...+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gt-------T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~--~~~e 244 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGT-------TRDAVDTSFTYNQQEFVIVDTAGMRKKGKVY--ETTE 244 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------------CCEEEEETTEEEEETTHHHHTCBTTBC--CCCS
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCc-------eeeeeEEEEEECCeEEEEEECCCcCcCcccc--chHH
Confidence 345889999999999999987654322112221111 2255555566666667899998864332211 1123
Q ss_pred HHHHH-HHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcccCc
Q 008807 170 ELREK-LSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKKLNV 245 (553)
Q Consensus 170 ~~~~~-l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~l~~ 245 (553)
.+... ...++..+|++++|+|+.+........+...+ .+.|+++|+||+|+.+.... ...+.+.+.+.+. ....
T Consensus 245 ~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~--~~~~ 322 (436)
T 2hjg_A 245 KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ--FLDY 322 (436)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG--GGTT
T ss_pred HHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcc--cCCC
Confidence 33221 22345689999999999885432222222221 47899999999999865432 1222222222111 1223
Q ss_pred eeEEEeccCCccChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhh
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++.+||++|.|+++|++.+.+....... -=+++.+|.++..
T Consensus 323 ~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~-------~~~t~~ln~~l~~ 365 (436)
T 2hjg_A 323 APILFMSALTKKRIHTLMPAIIKASENHSL-------RVQTNVLNDVIMD 365 (436)
T ss_dssp SCEEECCTTTCTTGGGHHHHHHHHHHHHTC-------CCCHHHHHHHHHH
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHHHhhc-------CCCHHHHHHHHHH
Confidence 568999999999999999888765433211 1135667887765
No 49
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.79 E-value=1.7e-09 Score=109.98 Aligned_cols=164 Identities=12% Similarity=0.056 Sum_probs=101.6
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
..+.++|..++|++++++..-....--+.+.. ..+++.....+....++..++||+|... .....+.+.|
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~-------~tTr~~~~gi~~~~~~~i~~iDTpG~~~---~~~~~l~~~~ 78 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKA-------QTTRHRIVGIHTEGAYQAIYVDTPGLHM---EEKRAINRLM 78 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCS-------SCCSSCEEEEEEETTEEEEEESSSSCCH---HHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCC-------CcceeeEEEEEEECCeeEEEEECcCCCc---cchhhHHHHH
Confidence 36889999999999999876543211111111 1123445555666666788999987520 0001122234
Q ss_pred HHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEE
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVH 249 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi 249 (553)
......++.++|++++|+|+.++... ...+...+ .+.|+++|+||+|+... ...+.+.+.+ + ...+++..++
T Consensus 79 ~~~~~~~l~~~D~vl~Vvd~~~~~~~-~~~i~~~l~~~~~P~ilvlNK~D~~~~---~~~~~~~l~~-l-~~~~~~~~~i 152 (301)
T 1ega_A 79 NKAASSSIGDVELVIFVVEGTRWTPD-DEMVLNKLREGKAPVILAVNKVDNVQE---KADLLPHLQF-L-ASQMNFLDIV 152 (301)
T ss_dssp TCCTTSCCCCEEEEEEEEETTCCCHH-HHHHHHHHHSSSSCEEEEEESTTTCCC---HHHHHHHHHH-H-HTTSCCSEEE
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCCHH-HHHHHHHHHhcCCCEEEEEECcccCcc---HHHHHHHHHH-H-HHhcCcCceE
Confidence 44445667789999999999874322 22333222 26899999999999752 1222222211 1 1234444689
Q ss_pred EeccCCccChhhhHHHHHHhhc
Q 008807 250 LTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 250 ~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
.+||+++.|+++|++.|.+.++
T Consensus 153 ~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 153 PISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp ECCTTTTTTHHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999987654
No 50
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.78 E-value=2.5e-08 Score=92.89 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=95.0
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
+..++..+|..++|++++++........-+. .|. ......+........++||+|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~----~t~-------g~~~~~~~~~~~~l~i~Dt~G~~------------ 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHIT----PTQ-------GFNIKSVQSQGFKLNVWDIGGQR------------ 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEE----EET-------TEEEEEEEETTEEEEEEECSSCG------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCccc----CcC-------CeEEEEEEECCEEEEEEECCCCH------------
Confidence 4458889999999999999877643211010 111 22333445555567889998742
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.++.........+|++++|+|+.+... .....+..+. .+.|+++|+||+|+.... ....+.+. +....
T Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~----~~~~~ 146 (181)
T 1fzq_A 72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-PASEIAEG----LNLHT 146 (181)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHH----TTGGG
T ss_pred HHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC-CHHHHHHH----hCchh
Confidence 233334455678999999999987531 1122233222 358999999999997543 22222221 11111
Q ss_pred --cCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 243 --LNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 243 --l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.....++.+||++|.|++++++.|.+..
T Consensus 147 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 147 IRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp CCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred ccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 1123578999999999999999887643
No 51
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=1.8e-08 Score=91.52 Aligned_cols=151 Identities=14% Similarity=0.063 Sum_probs=90.7
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|...+|++++++...... ..|.+.. ...+........ ....++||+|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~-----------~~~~~~~~~~~~~~~~~~~~Dt~G~~~--------- 63 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-----------EDTYRQVISCDKSICTLQITDTTGSHQ--------- 63 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCS-----------CEEEEEEEEETTEEEEEEEEECCSCSS---------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc-----------cccEEEEEEECCEEEEEEEEECCCchh---------
Confidence 467788999999999998765321 1222211 022222222222 2357899987521
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh---CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHH
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA---GANPIILVVTKVDLLPKGTD-FNCVGDWVVEAT 238 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~---~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~ 238 (553)
+..........+|.+++|+|+.+.. ..+...+.... .+.|+++|+||+|+.+.... ......+.
T Consensus 64 ---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~---- 136 (172)
T 2erx_A 64 ---FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA---- 136 (172)
T ss_dssp ---CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH----
T ss_pred ---hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH----
Confidence 1122233456789999999998742 22333333332 36899999999999754322 11222221
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHhhcc
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKG 272 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g 272 (553)
...+ ..++.+||+++.|++++++.|.+....
T Consensus 137 --~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 137 --RTWK-CAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp --HHHT-CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred --HHhC-CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 1122 467899999999999999998876543
No 52
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.78 E-value=1.5e-08 Score=91.44 Aligned_cols=148 Identities=16% Similarity=0.087 Sum_probs=89.5
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|..++|++++++..-... ..|.+. ..+.....+...+. ...++||+|...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------- 63 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPT-----------IEDFYRKEIEVDSSPSVLEILDTAGTEQ--------- 63 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT-----------CCEEEEEEEEETTEEEEEEEEECCCTTC---------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCCC-----------cceeEEEEEEECCEEEEEEEEECCCchh---------
Confidence 467888999999999987643211 111111 11333344444332 256899987421
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATT 239 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~ 239 (553)
+..........+|.+++|+|+.+... .+...+.... .+.|+++|+||+|+.+... ......++.
T Consensus 64 ---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----- 135 (167)
T 1kao_A 64 ---FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA----- 135 (167)
T ss_dssp ---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----
T ss_pred ---hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH-----
Confidence 12223334568899999999987531 2223333332 3689999999999975432 122222221
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 136 -~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 136 -EEWG-CPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp -HHHT-SCEEEECTTCHHHHHHHHHHHHHH
T ss_pred -HHhC-CCEEEecCCCCcCHHHHHHHHHHH
Confidence 1122 358899999999999999888654
No 53
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.78 E-value=1.3e-08 Score=97.57 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=86.2
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|..++|++++++..-... ..|.+. ..+.....+...+. ...++||+|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------- 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT-----------VFERYMVNLQVKGKPVHLHIWDTAGQD-------- 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCC-----------CCEEEEEEEEETTEEEEEEEEEC------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-----------cceeEEEEEEECCEEEEEEEEECCCch--------
Confidence 34588899999999999998765321 111111 11333344444332 45688998742
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCC-------------C
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGT-------------D 226 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-------------~ 226 (553)
.+..........+|++++|+|+.+... .+...+.....+.|+++|+||+|+.+... .
T Consensus 94 ----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 169 (214)
T 2j1l_A 94 ----DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVT 169 (214)
T ss_dssp ---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCC
T ss_pred ----hhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCccc
Confidence 233333444668999999999987531 23334443335789999999999976421 1
Q ss_pred hhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 227 FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.....++. ..++...++.+||++|.|++++++.|.+.
T Consensus 170 ~~~~~~~~------~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 170 YHRGQEMA------RSVGAVAYLECSARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp HHHHHHHH------HHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHH------HhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 11112221 22343468999999999999999888653
No 54
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.78 E-value=1.8e-08 Score=94.92 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=92.3
Q ss_pred cccccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
+..++..+|...+|++++++..-... ..|. .|. ......+........++||+|...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~-----~t~-------~~~~~~~~~~~~~~~i~Dt~G~~~---------- 85 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTI-------GFNVETVEYKNICFTVWDVGGQDK---------- 85 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEE-----EET-------TEEEEEEEETTEEEEEEECC--------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccC-----CcC-------ceeEEEEEECCEEEEEEECCCCHh----------
Confidence 34578999999999999998764321 1111 111 334455555555678999987532
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
+.......+..+|++++|+|+.+.. ......+..+. .+.|+++|+||+|+.... ....+.+. ....
T Consensus 86 --~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~----~~~~ 158 (192)
T 2b6h_A 86 --IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM-PVSELTDK----LGLQ 158 (192)
T ss_dssp ---CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHH----TTGG
T ss_pred --HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC-CHHHHHHH----hCcc
Confidence 2222334456899999999998863 12222233322 368999999999996543 22222221 1111
Q ss_pred cc--CceeEEEeccCCccChhhhHHHHHHhh
Q 008807 242 KL--NVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 242 ~l--~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.. ....++.+||+++.|++++++.|.+..
T Consensus 159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred cccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 11 113588999999999999999887643
No 55
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.78 E-value=2.9e-08 Score=92.81 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=94.4
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCcccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l 167 (553)
+..++..+|...+|++++++..-... ..|.+ ....| .+. ..... +....++||+|... .. .+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~t-------~~~--~~~~~-~~~~~l~Dt~G~~~-~~-~~~~~ 88 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSS-KPGKT-------QTL--NFYII-NDELHFVDVPGYGF-AK-VSKSE 88 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC---------------------CCE--EEEEE-TTTEEEEECCCBCC-CS-SCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCC-CCCce-------eeE--EEEEE-CCcEEEEECCCCCc-cc-cCHHH
Confidence 44578899999999999998765331 11111 00001 111 12222 34678999988421 11 11122
Q ss_pred HHHHHHHHHHhhhcc---cEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc
Q 008807 168 ADELREKLSHLRREK---ALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK 242 (553)
Q Consensus 168 ~e~~~~~l~~~~~~a---dlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~ 242 (553)
.+.+..........+ |++++|+|+.+........+...+ .+.|+++|+||+|+.+... .....+.+.+.+. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-~~~~~~~~~~~~~-~- 165 (195)
T 1svi_A 89 REAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGK-WDKHAKVVRQTLN-I- 165 (195)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGG-HHHHHHHHHHHHT-C-
T ss_pred HHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHH-HHHHHHHHHHHHc-c-
Confidence 455555555555555 999999999875433222222222 4689999999999986432 1111111111111 1
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.....++.+||+++.|+++|++.|.+.+
T Consensus 166 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 166 DPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 1225689999999999999999887643
No 56
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.78 E-value=1.4e-08 Score=92.06 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=89.2
Q ss_pred cccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|..++|++++++..-.. ...|.+.. ..+.........+. ...++||+|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~D~~G~~~--------- 64 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI----------GAAFLTQRVTINEHTVKFEIWDTAGQER--------- 64 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS----------SEEEEEEEEEETTEEEEEEEEEECCSGG---------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----------ceeEEEEEEEECCEEEEEEEEECCCChh---------
Confidence 35778899999999998754321 11122110 01233344444322 467899987422
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
+.......+..+|++++|+|+.+... .++..+.... .+.|+++|+||+|+.+.........+...+.. .
T Consensus 65 ---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~--~ 139 (170)
T 1ek0_A 65 ---FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLA--E 139 (170)
T ss_dssp ---GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH--H
T ss_pred ---hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHH--H
Confidence 12223344678999999999987531 1222333222 36789999999999865211111111111111 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 140 ~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 140 EKG-LLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHT-CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred HcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122 3688999999999999999887543
No 57
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.77 E-value=1.8e-08 Score=91.47 Aligned_cols=149 Identities=15% Similarity=0.042 Sum_probs=80.3
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|..++|++++++.........+.+.. .......+...+. ...++||+|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~D~~g~~~------------ 61 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAA----------GHTYDRSIVVDGEEASLMVYDIWEQDG------------ 61 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--------------------CEEEEEEEETTEEEEEEEEECC----------------
T ss_pred EEEEECCCCCCHHHHHHHHcCccccCCCCcc----------ccceEEEEEECCEEEEEEEEECCCCcc------------
Confidence 5677889999999999876533221111100 0222223333222 346789987532
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHhhcc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATTKKK 242 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~~~~ 242 (553)
+..........+|.+++|+|+.+... .+...+.... .+.|+++|+||+||.+.... ......+. ..
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~ 135 (166)
T 3q72_A 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA------VV 135 (166)
T ss_dssp -----------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH------HH
T ss_pred chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH------HH
Confidence 22223334568899999999987531 1222222211 35799999999999865432 22222221 12
Q ss_pred cCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 243 LNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 243 l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.+ ..++.+||++|.|++++++.|.+..
T Consensus 136 ~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 136 FD-CKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp TT-CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred hC-CcEEEeccCCCCCHHHHHHHHHHHH
Confidence 23 4688999999999999998887643
No 58
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.77 E-value=2.7e-08 Score=92.05 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=75.3
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l 167 (553)
...++..+|...+|++++++..... ........+. ..+.....+...+ ....++||+|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~---~~~~~~~~t~-----~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------- 68 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED---AFNSTFISTI-----GIDFKIRTIELDGKRIKLQIWDTAGQE---------- 68 (183)
T ss_dssp EEEEEEEECCCCC-------------------CHHHHH-----CEEEEEEEEEETTEEEEEEEEEC--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC---CCCCCCCCcc-----cceeEEEEEEECCEEEEEEEEcCCCCh----------
Confidence 4457889999999999999876532 1111111221 1133334444433 346789998742
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
.+..........+|++++|+|+.+... .++..+.... .+.|+++|+||+||..... ..+...++.
T Consensus 69 --~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------ 140 (183)
T 2fu5_C 69 --RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA------ 140 (183)
T ss_dssp -------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH------
T ss_pred --hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHH------
Confidence 222223344678999999999988531 1223333321 3579999999999976432 223333332
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHH
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+ ..++.+||+++.|++++++.|.+
T Consensus 141 ~~~~-~~~~~~Sa~~~~~i~~l~~~l~~ 167 (183)
T 2fu5_C 141 LDYG-IKFMETSAKANINVENAFFTLAR 167 (183)
T ss_dssp HHHT-CEEEECCC---CCHHHHHHHHHH
T ss_pred HHcC-CeEEEEeCCCCCCHHHHHHHHHH
Confidence 1123 36889999999999999888765
No 59
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.76 E-value=1.4e-08 Score=96.42 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=94.1
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~ 166 (553)
.+..++..+|..++|++++++...... | ......|. ..+.....+...+ ....++||+|..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~--~-~~~~~~t~-----~~~~~~~~~~~~~~~~~l~i~Dt~G~~--------- 89 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA--F-SERQGSTI-----GVDFTMKTLEIQGKRVKLQIWDTAGQE--------- 89 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC--C----------------CEEEEEEEETTEEEEEEEECCTTCG---------
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC--C-CCCCCCCc-----ceEEEEEEEEECCEEEEEEEEECCCcH---------
Confidence 344588999999999999997653221 1 11111111 0133334444433 256789998742
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCC-CChhhHHHHHHHHHh
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKG-TDFNCVGDWVVEATT 239 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~-~~~~~~~~~~~~~~~ 239 (553)
.+.......+..+|++|+|+|+.+... .++..+.... .+.|+++|+||+||.... .......++.
T Consensus 90 ---~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----- 161 (201)
T 2hup_A 90 ---RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLA----- 161 (201)
T ss_dssp ---GGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----
T ss_pred ---hHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHH-----
Confidence 233344555678999999999987431 2333333332 457999999999997532 2223333332
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+...++.+||+++.|++++++.|.+.
T Consensus 162 -~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 190 (201)
T 2hup_A 162 -EHYDILCAIETSAKDSSNVEEAFLRVATE 190 (201)
T ss_dssp -HHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred -HHcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 22343368999999999999999888654
No 60
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.76 E-value=3.1e-08 Score=94.39 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=89.5
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec---CCccEEEecCCCCCccCCCcc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL---SHGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l---~~~~~~~dTaG~vgf~~~~~~ 165 (553)
.+..++..+|...+|++++++..-... |.... .+. ..-...+... .....++||+|.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~--~~~-------~~~~~~~~~~~~~~~~~~i~Dt~G~--------- 64 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQ--TSI-------TDSSAIYKVNNNRGNSLTLIDLPGH--------- 64 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC--CCCBC--CCC-------SCEEEEEECSSTTCCEEEEEECCCC---------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--ccccc--CCc-------ceeeEEEEecCCCccEEEEEECCCC---------
Confidence 344578899999999999998654321 11110 000 1111123333 334689999874
Q ss_pred ccHHHHHH-HHHHhhhcccEEEEEcccCCCChhh---HHHHHHH-------hCCCCEEEEEEcccCCCCCCChhhHHHHH
Q 008807 166 VSADELRE-KLSHLRREKALIVKLVDIVDFNGSF---LARIRDL-------AGANPIILVVTKVDLLPKGTDFNCVGDWV 234 (553)
Q Consensus 166 ~l~e~~~~-~l~~~~~~adlIl~VVD~~d~~~s~---~~~l~~~-------~~~~pvIlVlNKiDLl~~~~~~~~~~~~~ 234 (553)
+.+.. ........+|++|+|+|+.++..++ ...+... ..+.|+++|+||+||..... ...+.+.+
T Consensus 65 ---~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~l 140 (214)
T 2fh5_B 65 ---ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS-AKLIQQQL 140 (214)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC-HHHHHHHH
T ss_pred ---hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc-HHHHHHHH
Confidence 23444 3444567899999999998743222 1222211 12579999999999986543 33333333
Q ss_pred HHHHh-------------------hcccC-------------ceeEEEeccCCc------cChhhhHHHHHH
Q 008807 235 VEATT-------------------KKKLN-------------VLSVHLTSSKSL------AGIVGVASEIQK 268 (553)
Q Consensus 235 ~~~~~-------------------~~~l~-------------~~~vi~iSAk~g------~gi~~Ll~~L~~ 268 (553)
.+.+. ...++ ...++.+||++| .|++++++.|.+
T Consensus 141 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 141 EKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp HHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred HHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence 22221 00111 245788999999 999999988865
No 61
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.76 E-value=1e-08 Score=94.84 Aligned_cols=154 Identities=12% Similarity=0.013 Sum_probs=93.2
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..++..+|...+|++++++.........+.+ |. ......+...+....++||+|...|..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----t~-------~~~~~~~~~~~~~~~i~Dt~G~~~~~~------- 77 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP----TI-------GFNVETLSYKNLKLNVWDLGGQTSIRP------- 77 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS----ST-------TCCEEEEEETTEEEEEEEEC----CCT-------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC----cC-------ccceEEEEECCEEEEEEECCCCHhHHH-------
Confidence 345688999999999999998776432211111 11 122334444455677999987543221
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
.....+..+|++++|+|+.+.. ......+..+. .+.|+++|+||+||.... ....+.+++ ...
T Consensus 78 -----~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~i~~~~----~~~ 147 (183)
T 1moz_A 78 -----YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-SASEVSKEL----NLV 147 (183)
T ss_dssp -----TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-CHHHHHHHT----TTT
T ss_pred -----HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC-CHHHHHHHh----Ccc
Confidence 1233456899999999998764 22223333332 457999999999997543 233333221 111
Q ss_pred cc--CceeEEEeccCCccChhhhHHHHHHhh
Q 008807 242 KL--NVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 242 ~l--~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
.. ....++.+||+++.|++++++.|.+..
T Consensus 148 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 148 ELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred cccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 11 123689999999999999998887643
No 62
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.76 E-value=1.2e-08 Score=94.52 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=91.1
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCc--cEEEecCCCCCccCCCccccH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHG--HMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~--~~~~dTaG~vgf~~~~~~~l~ 168 (553)
..++..+|...+|++++++..-... +...... ...+.........+.. ..++||+|...|
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~-------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------- 65 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH--FVDEYDP-------TIEDSYRKQVVIDGETCLLDILDTAGQEEY--------- 65 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCT-------TCCEEEEEEEEETTEEEEEEEEECCCC------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCC-------CchheEEEEEEECCcEEEEEEEECCCcHHH---------
Confidence 3477888999999999988764221 1111000 1124444444444332 457999885322
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
..........+|.+++|+|+.+... .+...+.... .+.|+++|+||+|+...........++. .
T Consensus 66 ---~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~------~ 136 (189)
T 4dsu_A 66 ---SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA------R 136 (189)
T ss_dssp ---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH------H
T ss_pred ---HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH------H
Confidence 1222334557899999999987431 2223333322 3689999999999986554433333332 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..+ ..++.+||++|.|++++++.|.+.
T Consensus 137 ~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 137 SYG-IPFIETSAKTRQGVDDAFYTLVRE 163 (189)
T ss_dssp HHT-CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcC-CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 122 458899999999999998887654
No 63
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.75 E-value=1.8e-08 Score=94.01 Aligned_cols=158 Identities=16% Similarity=0.045 Sum_probs=91.2
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEe-------c--CCccEEEecCCCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRL-------L--SHGHMITAVGGNGGY 159 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~-------l--~~~~~~~dTaG~vgf 159 (553)
....++..+|..++|++++++......+.-+..... .......++...-+. . .....++||+|...|
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMV----SLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCE----EEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcccccccccc----ccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 344588899999999999997655322221110000 000000111111111 0 113568899875322
Q ss_pred cCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC----hhhHHHHHHHh-------CCCCEEEEEEcccCCCCCCChh
Q 008807 160 AGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN----GSFLARIRDLA-------GANPIILVVTKVDLLPKGTDFN 228 (553)
Q Consensus 160 ~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~----~s~~~~l~~~~-------~~~pvIlVlNKiDLl~~~~~~~ 228 (553)
.......+..+|++|+|+|+.+.. ......+..++ .+.|+++|+||+||... ...+
T Consensus 88 ------------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~ 154 (198)
T 3t1o_A 88 ------------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA-LPVE 154 (198)
T ss_dssp ------------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-CCHH
T ss_pred ------------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-cCHH
Confidence 122334567899999999998541 12222222221 46899999999999764 2334
Q ss_pred hHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 229 CVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.+.++. ...+...++.+||+++.|++++++.|.+.
T Consensus 155 ~~~~~~------~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 155 MVRAVV------DPEGKFPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp HHHHHH------CTTCCSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred HHHHHH------HhcCCceEEEEecCCCcCHHHHHHHHHHH
Confidence 444432 23343368999999999999999887653
No 64
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.75 E-value=2.8e-08 Score=93.11 Aligned_cols=154 Identities=12% Similarity=0.043 Sum_probs=93.2
Q ss_pred ccccccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|...+|++++++..... ...|.+. . ............ ....++||+|...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-----~------~~~~~~~~~~~~~~~~~~l~Dt~G~~~------ 68 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPT-----I------EDTYRQVISCDKSVCTLQITDTTGSHQ------ 68 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCC-----C------CEEEEEEEEETTEEEEEEEEECCGGGS------
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCc-----c------ccceeEEEEECCEEEEEEEEeCCChHH------
Confidence 34457889999999999998876432 1122211 1 012222222222 2456899987421
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh---CCCCEEEEEEcccCCCCCCChhhHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA---GANPIILVVTKVDLLPKGTDFNCVGDWVVE 236 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~---~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~ 236 (553)
+..........+|++++|+|+.+.. ..+...+.... .+.|+++|+||+|+.+..........+.
T Consensus 69 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-- 140 (199)
T 2gf0_A 69 ------FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA-- 140 (199)
T ss_dssp ------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH--
T ss_pred ------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH--
Confidence 1222333456789999999998743 12333333332 2579999999999986543333333332
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHHhhcc
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKG 272 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g 272 (553)
...+ ..++.+||+++.|+++|++.|.+....
T Consensus 141 ----~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 141 ----QEWK-CAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp ----HHHT-CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred ----HHhC-CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 1122 368899999999999999998775543
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.75 E-value=3.8e-08 Score=91.72 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=89.1
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
..++..+|...+|++++++..-... +..... . ...+.....+...+. ...++||+|..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~-~------t~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------- 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYD-P------TIEDSYRKQVVIDGETCLLDILDTAGQE----------- 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSCCC-T------TCCEEEEEEEEETTEEEEEEEEECCC-------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC--CccccC-C------ccceEEEEEEEECCEEEEEEEEECCChH-----------
Confidence 3578889999999999998764221 111100 0 011333344444332 35689998742
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
.+.......+..+|++++|+|+.+... .+...+.... .+.|+++|+||+|+.+.........++. .
T Consensus 81 -~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~ 153 (190)
T 3con_A 81 -EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA------K 153 (190)
T ss_dssp ----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH------H
T ss_pred -HHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH------H
Confidence 233334455678999999999987531 1222333332 2689999999999987443333344432 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 154 ~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 180 (190)
T 3con_A 154 SYG-IPFIETSAKTRQGVEDAFYTLVRE 180 (190)
T ss_dssp HHT-CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcC-CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 123 368899999999999999888654
No 66
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.75 E-value=1.6e-08 Score=92.65 Aligned_cols=151 Identities=18% Similarity=0.110 Sum_probs=91.7
Q ss_pred ccccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~ 166 (553)
..++..+|...+|++++++..-.. ...|.+.. ..+.....+...+ ....++||+|...|
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~------- 76 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI----------GIDFLSKTMYLEDRTVRLQLWDTAGQERF------- 76 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCC----------SEEEEEEEEEETTEEEEEEEEEECCSGGG-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce----------eeEEEEEEEEECCeEEEEEEEECCCcHHH-------
Confidence 357888999999999999865321 11121110 1133444444433 24678999874322
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHh
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATT 239 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~ 239 (553)
.......+..+|++++|+|+.+.. ..++..+.... .+.|+++|+||+|+...... ......+.
T Consensus 77 -----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----- 146 (179)
T 2y8e_A 77 -----RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA----- 146 (179)
T ss_dssp -----GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----
T ss_pred -----HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHH-----
Confidence 112233456899999999998743 12223333222 36789999999999754321 22222222
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+.+
T Consensus 147 -~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 147 -KELN-VMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp -HHHT-CEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred -HHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1122 4688999999999999999887654
No 67
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.75 E-value=1.4e-08 Score=92.94 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=92.7
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++..+|..++||+++++...... .++++. . ..+.....+...+....++||+|...|... ...+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~---~-------t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~ 70 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPG---V-------TVEKKEGEFEYNGEKFKVVDLPGVYSLTAN---SIDE 70 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC---------------CCCCCEEEEEETTEEEEEEECCCCSCSSSS---SHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCC---c-------ceeeeEEEEEECCcEEEEEECCCcccCCCc---chhH
Confidence 367888999999999998765421 232221 0 113334445555556789999987544321 1122
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCcee
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLS 247 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (553)
.+...... ..++|++++|+|+.++.. .+...+.. .+.|+++|+||+|+...........++. ..++ ..
T Consensus 71 ~~~~~~~~-~~~~~~~i~v~D~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~-~~ 140 (165)
T 2wji_A 71 IIARDYII-NEKPDLVVNIVDATALERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLE------KILG-VK 140 (165)
T ss_dssp HHHHHHHH-HHCCSEEEEEEETTCHHHHHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHH------HHHT-SC
T ss_pred HHHHHHHh-cCCCCEEEEEecCCchhHhHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHH------HHhC-CC
Confidence 22222111 137899999999987532 12223322 3689999999999864321111122321 1122 35
Q ss_pred EEEeccCCccChhhhHHHHHHhh
Q 008807 248 VHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 248 vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
++.+||++|.|++++++.|.+..
T Consensus 141 ~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 141 VVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 78999999999999998887543
No 68
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.74 E-value=3.4e-08 Score=91.67 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=93.4
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceE-EEEEEecC-----------CccEEEecC
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVL-CGRCRLLS-----------HGHMITAVG 154 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~i-c~Rc~~l~-----------~~~~~~dTa 154 (553)
.+..++..+|...+|++++++...... +.|.+... .+.. ........ ....++||+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~ 78 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG----------IDFREKRVVYRANGPDGAVGRGQRIHLQLWDTA 78 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCS----------EEEEEEEEEECTTSCCCSSCCCEEEEEEEEEEC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccc----------eeeeeEEEEEecCCcccccccCcEEEEEEEeCC
Confidence 344588899999999999987654211 11221100 0111 12333322 246789998
Q ss_pred CCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-C
Q 008807 155 GNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGT-D 226 (553)
Q Consensus 155 G~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~ 226 (553)
|. +.+.......+..+|++++|+|+.+.. ..++..+.... .+.|+++|+||+|+.+... .
T Consensus 79 G~------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 146 (195)
T 3bc1_A 79 GL------------ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK 146 (195)
T ss_dssp CS------------GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC
T ss_pred Cc------------HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC
Confidence 74 233444556678999999999998753 12333333332 3689999999999975432 2
Q ss_pred hhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 227 FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+.++. ...+ ..++.+||+++.|++++++.|.+.
T Consensus 147 ~~~~~~~~------~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 147 EEEARELA------EKYG-IPYFETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp HHHHHHHH------HHHT-CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHH------HHcC-CCEEEEECCCCCCHHHHHHHHHHH
Confidence 23333332 1122 368899999999999998887653
No 69
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=1.3e-08 Score=95.23 Aligned_cols=152 Identities=15% Similarity=0.109 Sum_probs=94.5
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|..++|++++++..-... ..|.+.. ..+........... ...++||+|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~i~Dt~G--------- 81 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV----------GIDFKVKTVYRHEKRVKLQIWDTAG--------- 81 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEE----------TTTEEEEEEEETTTTEEEEEECHHH---------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCe----------eeEEEEEEEEECCEEEEEEEEeCCC---------
Confidence 445588999999999999997654211 1111110 01233344443322 357888875
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGTD-FNCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~ 237 (553)
.+.+.......+..+|++++|+|+.+.. ..++..+.... .+.|+++|+||+|+...... ......+.
T Consensus 82 ---~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--- 155 (191)
T 3dz8_A 82 ---QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLA--- 155 (191)
T ss_dssp ---HHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH---
T ss_pred ---hHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHH---
Confidence 3455555666678999999999998742 12333333322 36899999999999654322 22222221
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 156 ---~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 156 ---EQLG-FDFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp ---HHHT-CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---HHcC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 1223 368899999999999999888654
No 70
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.74 E-value=1.8e-08 Score=94.92 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=70.0
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC----CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS----HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~----~~~~~~dTaG~vgf~~~~~~ 165 (553)
...++..+|...+|++++++..-....-+... ...|. ..+.....+...+ ....++||+|.
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~~t~-----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------- 83 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKD-YAMTS-----GVEVVVAPVTIPDTTVSVELFLLDTAGS--------- 83 (208)
T ss_dssp EEEEEEEC----------------------------------------CEEEECTTSSEEEEEEEEETTTT---------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCC-CCCcc-----ceEEEEEEEEECCcccEEEEEEEECCCc---------
Confidence 34588999999999999998765431111111 00111 0022333444432 24678999874
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh----CCCCEEEEEEcccCCC-CC-CChhhHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA----GANPIILVVTKVDLLP-KG-TDFNCVGDWV 234 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~----~~~pvIlVlNKiDLl~-~~-~~~~~~~~~~ 234 (553)
+.+.......+..+|++++|+|+.+... .++..+.... .+.|+++|+||+|+.. .. .......++.
T Consensus 84 ---~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~ 160 (208)
T 2yc2_C 84 ---DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA 160 (208)
T ss_dssp ---HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH
Confidence 3455556666788999999999987531 2223333322 3679999999999976 32 2223333332
Q ss_pred HHHHhhcccCceeEEEeccCC-ccChhhhHHHHHHh
Q 008807 235 VEATTKKKLNVLSVHLTSSKS-LAGIVGVASEIQKE 269 (553)
Q Consensus 235 ~~~~~~~~l~~~~vi~iSAk~-g~gi~~Ll~~L~~~ 269 (553)
..++ ..++.+||++ +.|++++++.|.+.
T Consensus 161 ------~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 161 ------TTNT-LDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp ------HHTT-CEEEECCC-------CHHHHHHHHH
T ss_pred ------HHcC-CEEEEeccCCCCcCHHHHHHHHHHH
Confidence 1233 4688999999 99999999887653
No 71
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.74 E-value=2.4e-08 Score=94.08 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=92.0
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
+..++..+|..++|++++++..-... +.... .....+.....+...+. ...++||+|...|...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~-------~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----- 84 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEY-------IPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL----- 84 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-----------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS-----
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCCCC-------CCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH-----
Confidence 44578899999999999997664321 11110 01112344444444332 3458999886433211
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCC-------------CChh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKG-------------TDFN 228 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~-------------~~~~ 228 (553)
.......+|++++|+|+.+... .++..+.....+.|+++|+||+||.+.. ....
T Consensus 85 -------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 157 (201)
T 2q3h_A 85 -------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEE 157 (201)
T ss_dssp -------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHH
T ss_pred -------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHH
Confidence 1223568999999999987531 2333444434578999999999997531 1112
Q ss_pred hHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 229 CVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
....+. ..++...++.+||+++.|++++++.|.+.
T Consensus 158 ~~~~~~------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 158 AAKLLA------EEIKAASYIECSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp HHHHHH------HHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHH------HhcCCcEEEEEecCCCCCHHHHHHHHHHH
Confidence 222221 12233368899999999999999887653
No 72
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.74 E-value=4.2e-08 Score=92.54 Aligned_cols=149 Identities=14% Similarity=0.107 Sum_probs=91.7
Q ss_pred ccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~ 166 (553)
..++..+|...+|++++++..-... ..|.+... .+.....+.... ....++||+|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~----------~~~~~~~~~~~~~~~~~~l~Dt~G~~--------- 68 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG----------IDFKVKTIYRNDKRIKLQIWDTAGLE--------- 68 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS----------EEEEEEEEEETTEEEEEEEEEECCSG---------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc----------eeEEEEEEEECCeEEEEEEEECCCch---------
Confidence 4578889999999999997654321 22222110 022223333322 245789998742
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHh
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATT 239 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~ 239 (553)
.+.......+..+|++|+|+|+.+... .++..+.... .+.|+++|+||+|+..... ......++.
T Consensus 69 ---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----- 140 (203)
T 1zbd_A 69 ---RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLA----- 140 (203)
T ss_dssp ---GGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----
T ss_pred ---hhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHH-----
Confidence 233445556778999999999987531 1222333222 3689999999999976432 222233332
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..++ ..++.+||+++.|++++++.|.+
T Consensus 141 -~~~~-~~~~~~Sa~~~~gi~~l~~~l~~ 167 (203)
T 1zbd_A 141 -DHLG-FEFFEASAKDNINVKQTFERLVD 167 (203)
T ss_dssp -HHHT-CEEEECBTTTTBSSHHHHHHHHH
T ss_pred -HHCC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 1223 36889999999999999888764
No 73
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.74 E-value=2.3e-08 Score=101.74 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=92.8
Q ss_pred cccccccccCCCcccccCccccccCCC-CCcccCCchhhHhhhccCccceEEEEEEecCCc--cEEEecCCCCCccCCCc
Q 008807 88 KDKVLKVNSAVASCYGCGAPLQTSESD-APGYVDPDTYELKKKHHQFKTVLCGRCRLLSHG--HMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 88 ~~~~~~~~~~~~~C~GCG~~LQ~~d~~-~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~--~~~~dTaG~vgf~~~~~ 164 (553)
.+...++..+|..++|++++++..-.+ ..+.+.+ ...+.....+...+.. ..++||+|...|.
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~----------t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---- 217 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP----------TVFDNYSANVMVDGKPVNLGLWDTAGLEDYD---- 217 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCC----------CSEEEEEEEEEETTEEEEEEEEEECCCGGGT----
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCC----------cccceeEEEEEECCEEEEEEEEeCCCchhhh----
Confidence 344457888999999999999554211 1111111 1113333344443333 3489998853222
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCC-------------C
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKG-------------T 225 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~-------------~ 225 (553)
......+..+|++++|+|+++... .+...+.....+.|+++|+||+||.+.. .
T Consensus 218 --------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v 289 (332)
T 2wkq_A 218 --------RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 289 (332)
T ss_dssp --------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred --------HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccc
Confidence 222334668999999999987431 2334444433478999999999997531 1
Q ss_pred ChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 226 DFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
......+|. ...+...++.+||++|.|++++++.|.+.
T Consensus 290 ~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 290 TYPQGLAMA------KEIGAVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp CHHHHHHHH------HHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cHHHHHHHH------HHcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 111222221 22343468999999999999999888653
No 74
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.73 E-value=8.4e-09 Score=95.78 Aligned_cols=152 Identities=9% Similarity=0.038 Sum_probs=92.1
Q ss_pred cccccccCCCcccccCccccccCCCCCc-ccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPG-YVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~G-Y~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
+..++..+|..++|++++++........ |.+. . ......+...+....++||+|...|.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t-----~-------~~~~~~~~~~~~~~~i~Dt~G~~~~~-------- 79 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-----I-------GSNVEEIVINNTRFLMWDIGGQESLR-------- 79 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECC-----S-------SSSCEEEEETTEEEEEEEESSSGGGT--------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCc-----C-------ceeeEEEEECCEEEEEEECCCCHhHH--------
Confidence 3457889999999999999876543221 1111 1 11123344445567899998853221
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
......+..+|++++|+|+.+.. ......+..+. .+.|+++|+||+||.... ....+.+++.. ....
T Consensus 80 ----~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~-~~~~ 153 (181)
T 2h17_A 80 ----SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQFLKL-TSIK 153 (181)
T ss_dssp ----CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTG-GGCC
T ss_pred ----HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC-CHHHHHHHhCc-cccc
Confidence 11234467899999999999863 12222233222 468999999999997542 23333332100 0001
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+ ..++.+||+++.|++++++.|.+
T Consensus 154 ~~~-~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 154 DHQ-WHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp SSC-EEEEECBTTTTBTHHHHHHHHHT
T ss_pred CCc-eEEEEccCCCCcCHHHHHHHHHh
Confidence 112 36899999999999999988764
No 75
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.73 E-value=3e-08 Score=93.10 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=93.0
Q ss_pred ccccccccCCCcccccCccccccCCCCC--cccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAP--GYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~--GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|...+|++++++..-.+.. .|.+. ...+.....+...+ ....++||+|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t----------~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------- 86 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKST----------VGVDFKIKTVELRGKKIRLQIWDTAGQE------- 86 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CC----------TTEEEEEEEEEETTEEEEEEEEEECCSG-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCc----------cceeEEEEEEEECCeEEEEEEEeCCCcH-------
Confidence 3445789999999999999987654211 11110 01133344444433 246788998742
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~ 237 (553)
.+.......+..+|++|+|+|+.+.. ..+...+.... .+.|+++|+||+|+..... ......++.
T Consensus 87 -----~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~--- 158 (192)
T 2il1_A 87 -----RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFA--- 158 (192)
T ss_dssp -----GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH---
T ss_pred -----HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH---
Confidence 23333445567899999999998743 11223333322 3689999999999975432 122222221
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..+....++.+||+++.|++++++.|.+.
T Consensus 159 ---~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 187 (192)
T 2il1_A 159 ---QQITGMRFCEASAKDNFNVDEIFLKLVDD 187 (192)
T ss_dssp ---HTSTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---HhcCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 12222568899999999999999888654
No 76
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.73 E-value=1.3e-08 Score=94.07 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=90.6
Q ss_pred ccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~ 166 (553)
..++..+|...+|++++++....+. ..|.+. ..+.........+. ...++||+|...|.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------ 67 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-----------VFDNYSANVMVDGKPVNLGLWDTAGQEDYD------ 67 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCC-----------SCCEEEEEEEETTEEEEEEEECCCCSGGGT------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc-----------ccceeEEEEEECCEEEEEEEEECCCCHhHH------
Confidence 3477888999999999996543211 111111 11333333333322 24588998753221
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCC-------------Ch
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGT-------------DF 227 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-------------~~ 227 (553)
.........+|++++|+|+.+... .+...+.....+.|+++|+||+|+.+... ..
T Consensus 68 ------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 141 (186)
T 1mh1_A 68 ------RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 141 (186)
T ss_dssp ------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCH
T ss_pred ------HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCH
Confidence 112234568999999999987431 23334444334789999999999975421 11
Q ss_pred hhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 228 NCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
....++. ...+...++.+||++|.|++++++.|.+..
T Consensus 142 ~~~~~~~------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 142 PQGLAMA------KEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp HHHHHHH------HHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHH------HhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 1111121 223334689999999999999998887643
No 77
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.72 E-value=5.9e-08 Score=91.58 Aligned_cols=153 Identities=17% Similarity=0.111 Sum_probs=93.8
Q ss_pred ccccccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
+...++..+|...+|++++++..-.. ...|.+.. ..+.........+ ....++||+|...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-- 73 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----------GADFLTKEVMVDDRLVTMQIWDTAGQERFQSL-- 73 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC----------SEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc----------cceEEEEEEEECCEEEEEEEEeCCCcHHHHHh--
Confidence 34558899999999999999865321 11222110 0133334444333 24578999885433211
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWV 234 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~ 234 (553)
....+..+|++|+|+|+.+... .+...+.... .+.|+++|+||+|+............|.
T Consensus 74 ----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 143 (207)
T 1vg8_A 74 ----------GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC 143 (207)
T ss_dssp ----------CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH
T ss_pred ----------HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHH
Confidence 1223568999999999987531 2333333332 3579999999999985443333333332
Q ss_pred HHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 235 VEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 235 ~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
. ...+ ..++.+||++|.|++++++.|.+.
T Consensus 144 ~-----~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 144 Y-----SKNN-IPYFETSAKEAINVEQAFQTIARN 172 (207)
T ss_dssp H-----HTTS-CCEEECBTTTTBSHHHHHHHHHHH
T ss_pred H-----hcCC-ceEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 1122 468999999999999999888654
No 78
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.72 E-value=2.6e-08 Score=99.00 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=98.2
Q ss_pred ccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
..++..+|..++|++++++...... .|+++.- +.+.....+...+....++||+|...|... ...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~----------tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~~~ 71 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGV----------TVEKKEGVFTYKGYTINLIDLPGTYSLGYS---SID 71 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTS----------CCEEEEEEEEETTEEEEEEECCCCSSCCSS---SHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCc----------eEEEEEEEEEECCeEEEEEECCCcCccCCC---CHH
Confidence 3478889999999999998765421 2333211 113444455554556789999998655322 223
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCcee
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLS 247 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (553)
+.+...... ...+|+|++|+|++++... ...+..+. .+.|+++|+||+|+...........++. ..++ ..
T Consensus 72 e~v~~~~~~-~~~~d~ii~V~D~t~~~~~-~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~------~~lg-~~ 142 (258)
T 3a1s_A 72 EKIARDYLL-KGDADLVILVADSVNPEQS-LYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQ------KHLG-IP 142 (258)
T ss_dssp HHHHHHHHH-HSCCSEEEEEEETTSCHHH-HHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHH------HHHC-SC
T ss_pred HHHHHHHHh-hcCCCEEEEEeCCCchhhH-HHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHH------HHcC-CC
Confidence 333322221 1578999999999986432 22222222 3689999999999864332111122221 2233 46
Q ss_pred EEEeccCCccChhhhHHHHHHhh
Q 008807 248 VHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 248 vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
++.+||++|.|+++|++.|.+..
T Consensus 143 vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 143 VVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeeCCcCHHHHHHHHHHHh
Confidence 89999999999999999887654
No 79
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.72 E-value=6.4e-08 Score=90.20 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=95.2
Q ss_pred cccccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
+..++..+|..++|++++++..-.+. +.|.+ |. ......+........++||+|...|....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~-------~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~----- 83 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TV-------GVNLETLQYKNISFEVWDLGGQTGVRPYW----- 83 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----ST-------TCCEEEEEETTEEEEEEEECCSSSSCCCC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CC-------ceEEEEEEECCEEEEEEECCCCHhHHHHH-----
Confidence 44578999999999999998774321 11211 11 22234455555667899999864333221
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
......+|++++|+|+.+.. ......+..+. .+.|+++|+||+|+..... ...+.+.+... ...
T Consensus 84 -------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~-~~~ 154 (189)
T 2x77_A 84 -------RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVS-SIM 154 (189)
T ss_dssp -------SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGG-GCC
T ss_pred -------HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC-HHHHHHHhChh-hcc
Confidence 12346899999999999864 22222333332 3689999999999976532 22222221000 001
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 155 ~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 155 NRT-WTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp SSC-EEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCc-eEEEEccCCCccCHHHHHHHHHHHH
Confidence 112 3688999999999999998887654
No 80
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.72 E-value=3.1e-08 Score=90.11 Aligned_cols=150 Identities=16% Similarity=0.037 Sum_probs=86.8
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
++..+|..++|++++++...... ..+... ...+.....+...+. ...++||+|...|..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------- 66 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEME----------NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG------- 66 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC----------------------CEEEEEEEETTEEEEEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccccCC----------CcCCeeeEEEEECCeEEEEEEEECCCccccch-------
Confidence 56788999999999998763211 111111 012455555555432 345789987532211
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC--CCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG--ANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~--~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
.+ .......+|++++|+|+.+.. ..++..+..... +.|+++|+||+|+..... ......++.
T Consensus 67 -~~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------ 136 (169)
T 3q85_A 67 -WL---QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA------ 136 (169)
T ss_dssp -------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH------
T ss_pred -hh---hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH------
Confidence 01 112245689999999998742 123333333222 689999999999974332 222222221
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+..
T Consensus 137 ~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 137 GTLS-CKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp HHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHcC-CcEEEecCccCCCHHHHHHHHHHHH
Confidence 2233 3678999999999999998887643
No 81
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.71 E-value=1.6e-08 Score=94.41 Aligned_cols=103 Identities=21% Similarity=0.197 Sum_probs=65.7
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhCCCCEEEEEEcccCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAGANPIILVVTKVDLL 221 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~~~pvIlVlNKiDLl 221 (553)
...++||+|...| .......+..+|++++|+|+.+... .++..+... ...|+++|+||+|+.
T Consensus 94 ~~~i~Dt~G~~~~------------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~piilv~NK~D~~ 160 (208)
T 3clv_A 94 KFDIWDTAGQERY------------ASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS-SNYIIILVANKIDKN 160 (208)
T ss_dssp EEEEEECTTGGGC------------TTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCCEEEEEEECTTCC
T ss_pred EEEEEECCCcHHH------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh-CCCcEEEEEECCCcc
Confidence 4578999874222 1123344668999999999987531 122233322 348999999999932
Q ss_pred CCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 222 PKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
........+.++.. ..+ ..++.+||+++.|++++++.|.+.
T Consensus 161 ~~~~~~~~~~~~~~------~~~-~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 161 KFQVDILEVQKYAQ------DNN-LLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp -CCSCHHHHHHHHH------HTT-CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHH------HcC-CcEEEEecCCCCCHHHHHHHHHHH
Confidence 22333344444431 123 468899999999999999888654
No 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.71 E-value=2.6e-08 Score=90.28 Aligned_cols=150 Identities=17% Similarity=0.138 Sum_probs=91.5
Q ss_pred ccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~ 166 (553)
..++..+|...+|++++++..-... ..|.+.. ..+.....+...+ ....++||+|...|.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------ 68 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI----------GVDFLERQIQVNDEDVRLMLWDTAGQEEFD------ 68 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCC----------SSSEEEEEEEETTEEEEEEEECCTTGGGTT------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce----------EEEEEEEEEEECCEEEEEEEEcCCCcHhHH------
Confidence 4577888999999999998653221 1111110 1133344444432 245788998743221
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
.........+|++++|+|+.+.. ..++..+.....+.|+++|+||+|+..... ......++.
T Consensus 69 ------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~------ 136 (168)
T 1z2a_A 69 ------AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA------ 136 (168)
T ss_dssp ------CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHH------
T ss_pred ------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHH------
Confidence 11223356899999999998743 122333333335789999999999975432 223333332
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 137 ~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 137 KRLK-LRFYRTSVKEDLNVSEVFKYLAEK 164 (168)
T ss_dssp HHHT-CEEEECBTTTTBSSHHHHHHHHHH
T ss_pred HHcC-CeEEEEecCCCCCHHHHHHHHHHH
Confidence 1123 368899999999999999888654
No 83
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.71 E-value=7e-09 Score=108.53 Aligned_cols=57 Identities=25% Similarity=0.227 Sum_probs=44.2
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
+|.+||.||||||||+|+|.+. ++.++++|+||++++.-.....+ ..++||||+...
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~--------------~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGT--------------ESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSB--------------CCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred eEEEECCCCCCHHHHHHHHhCC--------------CCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 7999999999999999999864 33467899999986543222233 469999999754
No 84
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.71 E-value=1.8e-08 Score=91.55 Aligned_cols=151 Identities=17% Similarity=0.125 Sum_probs=90.7
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|...+|++++++..-... +.|.+.. ..+..+....... ....++||+|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~Dt~G~~~------- 67 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI----------GASFMTKTVQYQNELHKFLIWDTAGLER------- 67 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCC----------SEEEEEEEEEETTEEEEEEEEEECCSGG-------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce----------eEEEEEEEEEECCeEEEEEEEcCCCchh-------
Confidence 34578889999999999997653221 1111100 0022233333332 3457899987522
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHH-hCCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDL-AGANPIILVVTKVDLLPKGTD-FNCVGDWVVEAT 238 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~-~~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~ 238 (553)
+..........+|++++|+|+.+... .++..+... ....|+++|+||+|+...... ......+.
T Consensus 68 -----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~---- 138 (170)
T 1z0j_A 68 -----FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYA---- 138 (170)
T ss_dssp -----GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred -----hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHH----
Confidence 22223344568999999999987531 222333332 135789999999999764322 22222221
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|+++|++.|.+.
T Consensus 139 --~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 139 --DSIH-AIFVETSAKNAININELFIEISRR 166 (170)
T ss_dssp --HHTT-CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred --HHcC-CEEEEEeCCCCcCHHHHHHHHHHH
Confidence 1233 468899999999999999988764
No 85
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.71 E-value=3.3e-08 Score=89.54 Aligned_cols=149 Identities=12% Similarity=0.055 Sum_probs=90.0
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|...+|++++++..-... ..|.+. ..+.....+..... ...++||+|...|.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------- 65 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT-----------IEDSYRKQVEVDCQQCMLEILDTAGTEQFT------- 65 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC-----------SEEEEEEEEESSSCEEEEEEEEECSSCSST-------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC-----------ccceEEEEEEECCEEEEEEEEECCChHHHH-------
Confidence 367788999999999987754211 112111 11223333333222 35789998753221
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATT 239 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~ 239 (553)
.........+|.+++|+|+.+.. ..+...+.... .+.|+++|+||+|+..... ..+...++.
T Consensus 66 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----- 135 (167)
T 1c1y_A 66 -----AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA----- 135 (167)
T ss_dssp -----THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----
T ss_pred -----HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHH-----
Confidence 11223345789999999998742 22333444332 3689999999999975432 122233332
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..+....++.+||++|.|++++++.|.+.
T Consensus 136 -~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 136 -RQWCNCAFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp -HHTTSCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred -HHccCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 12222568999999999999999888654
No 86
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.70 E-value=3.7e-08 Score=94.07 Aligned_cols=154 Identities=11% Similarity=0.008 Sum_probs=88.7
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC----CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS----HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~----~~~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|..++|++++++..-... .......+. ............ ....++||+|...|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~t~------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--- 76 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGR---FEKNYNATV------GAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV--- 76 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCS---TTCEEETTT------TEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC---
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCC---CCCCCCCcc------ceeeEEEEEEeCCCcEEEEEEEecCCchhhch---
Confidence 344588999999999999998765321 111110111 011222222221 2357899987533221
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhC-CCCEEEEEEcccCCCCCCC-hhhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAG-ANPIILVVTKVDLLPKGTD-FNCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~-~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~ 237 (553)
.. ......+|++|+|+|+.+.. ..++..+..... +.|+++|+||+|+...... ......+
T Consensus 77 --~~-------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---- 143 (218)
T 4djt_A 77 --LK-------DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEV---- 143 (218)
T ss_dssp --CC-------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHH----
T ss_pred --HH-------HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH----
Confidence 11 12245799999999998743 122233333333 4799999999999765322 2211121
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
....+ ..++.+||++|.|++++++.|.+..
T Consensus 144 --~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 144 --LKGKN-YEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp --TTTCC-CEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred --HHHcC-CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 12223 4689999999999999998887643
No 87
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.70 E-value=3.2e-08 Score=90.92 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=88.4
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEec-C--CccEEEecCCCCCccCCC
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLL-S--HGHMITAVGGNGGYAGGK 163 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-~--~~~~~~dTaG~vgf~~~~ 163 (553)
.+..++..+|...+|++++++..-... ..|.+.. ..+......... + ....++||+|..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------ 69 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI----------GADFLTKEVTVDGDKVATMQVWDTAGQE------ 69 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---C----------CCSCEEEEECCSSSCCEEEEEECCC---------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc----------ceEEEEEEEEEcCCcEEEEEEEECCCCh------
Confidence 345588899999999999997653211 1121110 013344444433 1 235788998732
Q ss_pred ccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-----CCCCEEEEEEcccCCCCCC--ChhhHH
Q 008807 164 QFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-----GANPIILVVTKVDLLPKGT--DFNCVG 231 (553)
Q Consensus 164 ~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~--~~~~~~ 231 (553)
.+..........+|.+++|+|+.+.. ..+...+.... .+.|+++|+||+|+..... ......
T Consensus 70 ------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~ 143 (182)
T 1ky3_A 70 ------RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ 143 (182)
T ss_dssp -------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred ------HhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHH
Confidence 23333445567899999999998753 12233333332 4579999999999964322 122233
Q ss_pred HHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 232 DWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 232 ~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
++. .. .....++.+||+++.|++++++.|.+.
T Consensus 144 ~~~-----~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 144 ELA-----KS-LGDIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp HHH-----HH-TTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHH-----Hh-cCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 331 11 222568999999999999999888653
No 88
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.70 E-value=1.1e-08 Score=94.05 Aligned_cols=154 Identities=15% Similarity=0.132 Sum_probs=93.2
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC---CccEEEecCCCCCccCCCccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS---HGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~---~~~~~~dTaG~vgf~~~~~~~ 166 (553)
+..++..+|...+|++++++...... .......|. ..+.....+...+ ....++||+|...|.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~---~~~~~~~t~-----~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~------ 70 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQET---FGKQYKQTI-----GLDFFLRRITLPGNLNVTLQIWDIGGQTIGG------ 70 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGG---TTHHHHHTT-----TSSEEEEEEEETTTEEEEEEEEECTTCCTTC------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCc---CCCCCCCce-----eEEEEEEEEEeCCCCEEEEEEEECCCCcccc------
Confidence 34578889999999999997654221 111100011 1244455555543 356789998853221
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh---CCCC-EEEEEEcccCCCCCC-ChhhHHHHHHH
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA---GANP-IILVVTKVDLLPKGT-DFNCVGDWVVE 236 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~---~~~p-vIlVlNKiDLl~~~~-~~~~~~~~~~~ 236 (553)
......+..+|++++|+|+.+... .++..+.... ...| +++|+||+|+..... ..+...++.
T Consensus 71 ------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-- 142 (178)
T 2hxs_A 71 ------KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-- 142 (178)
T ss_dssp ------TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH--
T ss_pred ------chhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH--
Confidence 112233568999999999987531 2233333321 2556 789999999975322 222333332
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+..
T Consensus 143 ----~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 143 ----QENG-FSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp ----HHHT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ----HHcC-CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1123 3678999999999999999887654
No 89
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.70 E-value=5.8e-08 Score=88.90 Aligned_cols=152 Identities=16% Similarity=0.086 Sum_probs=92.6
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
.+..++..+|...+|++++++..-... ..|.+.. ..+.......... ....++||+|..
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~l~Dt~G~~------- 75 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI----------GVEFGTRIIEVSGQKIKLQIWDTAGQE------- 75 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSC----------CCCEEEEEEEETTEEEEEEEEECTTGG-------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc----------ceEEEEEEEEECCeEEEEEEEECCCCh-------
Confidence 345588899999999999988654221 1111110 0122333333332 245788998742
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~ 237 (553)
.+.......+..+|++++|+|+.+... .++..+.... .+.|+++|+||+|+..... ......++.
T Consensus 76 -----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--- 147 (179)
T 1z0f_A 76 -----RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFA--- 147 (179)
T ss_dssp -----GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH---
T ss_pred -----HhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH---
Confidence 222234445678999999999987531 2233333332 3678999999999975432 223333332
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 148 ---~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 148 ---EENG-LLFLEASAKTGENVEDAFLEAAKK 175 (179)
T ss_dssp ---HHTT-CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ---HHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 1223 468899999999999999888654
No 90
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.70 E-value=7.4e-09 Score=97.03 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=93.1
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|...+|++++++..-... ..|.+. ..+.........+ ....++||+|...|..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---- 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT-----------VFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR---- 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCS-----------SCCCEEEEEESSSCEEEEEEECCCCSSSSTT----
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc-----------ccceeEEEEEECCEEEEEEEEECCCCcchhH----
Confidence 34578899999999999997654321 111111 1133333444433 2356899988643321
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCC-------------CC
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKG-------------TD 226 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~-------------~~ 226 (553)
........+|++++|+|+.+... .++..+.....+.|+++|+||+|+.+.. ..
T Consensus 82 --------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 153 (194)
T 2atx_A 82 --------LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPIC 153 (194)
T ss_dssp --------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCC
T ss_pred --------HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccC
Confidence 12234568999999999987531 2344444444578999999999997642 11
Q ss_pred hhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 227 FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.....++. ..++...++.+||+++.|++++++.|.+.
T Consensus 154 ~~~~~~~~------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 154 VEQGQKLA------KEIGACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp HHHHHHHH------HHHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHH------HHcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 12222221 12233368899999999999999888653
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.69 E-value=2e-08 Score=94.35 Aligned_cols=148 Identities=14% Similarity=-0.006 Sum_probs=92.1
Q ss_pred cccccCCCcccccCccccccCCCCCc-ccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPG-YVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~G-Y~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
.++..+|..++|++++++....+... |.+ |. ......+...+....++||+|...|.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~~~~~-----t~-------~~~~~~~~~~~~~~~i~Dt~G~~~~~---------- 81 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLATLQP-----TW-------HPTSEELAIGNIKFTTFDLGGHIQAR---------- 81 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCCCCC-----CC-------SCEEEEEEETTEEEEEEECCCSGGGT----------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCcccc-----CC-------CCCeEEEEECCEEEEEEECCCCHHHH----------
Confidence 47889999999999998765432211 111 11 33445566656667899998753221
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc--
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK-- 241 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~-- 241 (553)
.........+|++++|+|+++... .....+..+. .+.|+++|+||+|+... ...+.+.+++ ...
T Consensus 82 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~----~~~~~ 154 (190)
T 1m2o_B 82 --RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-VSEAELRSAL----GLLNT 154 (190)
T ss_dssp --TSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-CCHHHHHHHT----TCSSC
T ss_pred --HHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-CCHHHHHHHh----CCccc
Confidence 112234568999999999998641 1112222221 46899999999999752 2333333321 110
Q ss_pred -------ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 242 -------KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 242 -------~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
......++.+||++|.|++++++.|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 155 TGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 112246889999999999999988764
No 92
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.69 E-value=3e-08 Score=94.72 Aligned_cols=153 Identities=13% Similarity=0.086 Sum_probs=92.9
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec------------CCccEEEecCCC
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL------------SHGHMITAVGGN 156 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l------------~~~~~~~dTaG~ 156 (553)
.+..++..+|...+|++++++....... ......|. ..+.....+... .....++||+|
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~---~~~~~~t~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G- 93 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF---NPKFITTV-----GIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG- 93 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC---CCEEEEEE-----EEEEEEEEEEEEC-------CCEEEEEEEEEEEES-
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC---CcCCCCce-----eEEEEEEEEEECCccccccccCceeEEEEEEECCC-
Confidence 4456889999999999999986543211 11110110 001122223222 23467889976
Q ss_pred CCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCC-Chh
Q 008807 157 GGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGT-DFN 228 (553)
Q Consensus 157 vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~-~~~ 228 (553)
.+.+.......+..+|++|+|+|+.+... .....+..+. ...|+++|+||+|+..... ...
T Consensus 94 -----------~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 94 -----------QERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp -----------HHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred -----------cHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 34566666677789999999999987432 1111111121 3578999999999975432 222
Q ss_pred hHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 229 CVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...++. ...+ ..++.+||+++.|++++++.|.+
T Consensus 163 ~~~~~~------~~~~-~~~~~~Sa~~g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 163 QARELA------DKYG-IPYFETSAATGQNVEKAVETLLD 195 (217)
T ss_dssp HHHHHH------HHTT-CCEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHHHH------HHCC-CcEEEEECCCCCCHHHHHHHHHH
Confidence 333332 1223 35889999999999999888764
No 93
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.69 E-value=8.2e-08 Score=87.69 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=86.6
Q ss_pred ccccccCCCcccccCccccccCCCCCc--ccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPG--YVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~G--Y~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~ 166 (553)
..++..+|..++|++++++.......- |...+ -+.....+...+. ...++||+|...+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~D~~g~~~~------- 65 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG-----------EDVYERTLTVDGEDTTLVVVDTWEAEKL------- 65 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSS-----------SSEEEEEEEETTEEEEEEEECCC------------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccc-----------cceeEEEEEECCEEEEEEEEecCCCCcc-------
Confidence 347788899999999999876432110 11100 1333344444332 3568899875321
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHH
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEAT 238 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~ 238 (553)
.+..........+|.+++|+|+.+... .+...+.... .+.|+++|+||+|+.+... .......+.
T Consensus 66 ---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~---- 138 (175)
T 2nzj_A 66 ---DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA---- 138 (175)
T ss_dssp -----CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH----
T ss_pred ---chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH----
Confidence 011222334567899999999987531 1222232221 2689999999999976432 222222221
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||++|.|++++++.|.+.
T Consensus 139 --~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 139 --VVFD-CKFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp --HHHT-SEEEECBTTTTBSHHHHHHHHHHH
T ss_pred --HHcC-CeEEEEecCCCCCHHHHHHHHHHH
Confidence 1122 468899999999999999888654
No 94
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.69 E-value=3.9e-08 Score=89.44 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=89.7
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|...+|++++++..-... ..|.+. . ..+.........+. ...++||+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t-----~-----~~~~~~~~~~~~~~~~~l~i~Dt~G~~-------- 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITT-----L-----GASFLTKKLNIGGKRVNLAIWDTAGQE-------- 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCC-----C-----SCEEEEEEEESSSCEEEEEEEECCCC---------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCc-----c-----ceEEEEEEEEECCEEEEEEEEECCCcH--------
Confidence 44578889999999999997653211 112211 0 11333344444332 34677998742
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEAT 238 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~ 238 (553)
.+..........+|.+++|+|+.+... .++..+.... .+.|+++|+||+|+.+... ......++.
T Consensus 67 ----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---- 138 (170)
T 1z08_A 67 ----RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYA---- 138 (170)
T ss_dssp ----------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHH----
T ss_pred ----hhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHH----
Confidence 222223334568999999999987531 1222333222 3678999999999976432 222333332
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 139 --~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1z08_A 139 --ESVG-AKHYHTSAKQNKGIEELFLDLCKR 166 (170)
T ss_dssp --HHTT-CEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred --HHcC-CeEEEecCCCCCCHHHHHHHHHHH
Confidence 1223 467899999999999999888754
No 95
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.68 E-value=1.8e-08 Score=96.70 Aligned_cols=151 Identities=15% Similarity=0.034 Sum_probs=91.1
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
...++..+|..++|++++++..-... ..|.+. . .+.......... ....++||+|...|.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t-----~------~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----- 89 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPT-----V------FENYTACLETEEQRVELSLWDTSGSPYYD----- 89 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCC-----S------EEEEEEEEEC--CEEEEEEEEECCSGGGT-----
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCe-----e------eeeEEEEEEECCEEEEEEEEECCCCHhHH-----
Confidence 34588999999999999998653221 111111 0 122222222222 245688998753222
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCC------hhhHHHHHHHhCCCCEEEEEEcccCCCC-------------CCC
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFN------GSFLARIRDLAGANPIILVVTKVDLLPK-------------GTD 226 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~------~s~~~~l~~~~~~~pvIlVlNKiDLl~~-------------~~~ 226 (553)
......+..+|++|+|+|+.+.. ..+...+.....+.|+++|+||+||... ...
T Consensus 90 -------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 162 (214)
T 3q3j_B 90 -------NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPIS 162 (214)
T ss_dssp -------TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCC
T ss_pred -------HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccC
Confidence 12233466899999999999853 1233334443357899999999999752 122
Q ss_pred hhhHHHHHHHHHhhcccCceeEEEeccCCccC-hhhhHHHHHHh
Q 008807 227 FNCVGDWVVEATTKKKLNVLSVHLTSSKSLAG-IVGVASEIQKE 269 (553)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~g-i~~Ll~~L~~~ 269 (553)
.....++. ..++...++.+||+++.| ++++++.|.+.
T Consensus 163 ~~~~~~~~------~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 163 YEQGCAIA------KQLGAEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp HHHHHHHH------HHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHcCCCEEEEeccCCCcccHHHHHHHHHHH
Confidence 22233332 223333678999999998 99999888654
No 96
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.68 E-value=5.1e-08 Score=87.73 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=88.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|...+|++++++..-... +..... . ...+.....+...+. ...++||+|...|
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~----------- 64 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH--FVDECD-P------TIEDSYRKQVVIDGETCLLDILDTAGQEEY----------- 64 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--CCSCCC-T------TCCEEEEEEEEETTEEEEEEEEECCCCSSC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CccccC-C------ccceEEEEEEEECCEEEEEEEEECCCchhh-----------
Confidence 56778888999999987653221 111000 0 011333334443322 3467899875311
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHhC--CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhccc
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLAG--ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKL 243 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~~--~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l 243 (553)
..........+|.+++|+|+.+... .+...+..... +.|+++|+||+|+.+.........++. ...
T Consensus 65 -~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~------~~~ 137 (166)
T 2ce2_X 65 -SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA------RSY 137 (166)
T ss_dssp -CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH------HHH
T ss_pred -hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH------HHc
Confidence 1122334557899999999987531 22233333322 689999999999987543333333332 112
Q ss_pred CceeEEEeccCCccChhhhHHHHHHh
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
+ ..++.+||+++.|++++++.|.+.
T Consensus 138 ~-~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 138 G-IPYIETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp T-CCEEEECTTTCTTHHHHHHHHHHH
T ss_pred C-CeEEEecCCCCCCHHHHHHHHHHH
Confidence 2 368999999999999999888754
No 97
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.68 E-value=7.9e-08 Score=89.66 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=91.7
Q ss_pred cccccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|...+|++++++..... ...|.+.. ..+.....+...+ ....++||+|.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~l~Dt~G~--------- 79 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI----------GVDFRERAVDIDGERIKIQLWDTAGQ--------- 79 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCC----------SCCEEEEEEEETTEEEEEEEEECCCS---------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc----------ceEEEEEEEEECCEEEEEEEEECCCc---------
Confidence 3457889999999999998765321 11111110 0133334444433 24678999873
Q ss_pred ccHHHHH-HHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHH
Q 008807 166 VSADELR-EKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVE 236 (553)
Q Consensus 166 ~l~e~~~-~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~ 236 (553)
+.+. .........+|++|+|+|+.+.. ..++..+.... .+.|+++|+||+|+..... ......++.
T Consensus 80 ---~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-- 154 (189)
T 1z06_A 80 ---ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA-- 154 (189)
T ss_dssp ---HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH--
T ss_pred ---hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH--
Confidence 2343 33455567899999999998742 23334444432 4689999999999975432 222222221
Q ss_pred HHhhcccCceeEEEeccCCc---cChhhhHHHHHH
Q 008807 237 ATTKKKLNVLSVHLTSSKSL---AGIVGVASEIQK 268 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g---~gi~~Ll~~L~~ 268 (553)
...+ ..++.+||+++ .|++++++.|.+
T Consensus 155 ----~~~~-~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 155 ----DTHS-MPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp ----HHTT-CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred ----HHcC-CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 1223 36789999999 888888877754
No 98
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=1.1e-08 Score=95.98 Aligned_cols=153 Identities=14% Similarity=0.106 Sum_probs=92.7
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEec--CCccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLL--SHGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l--~~~~~~~dTaG~vgf~~~~~ 164 (553)
.+..++..+|...+|++++++..-... ..|.+..- .+..+...... .....++||+|...|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----- 85 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG----------ASFMTKTVPCGNELHKFLIWDTAGQERF----- 85 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS----------EEEEEEEEECSSSEEEEEEEEECCSGGG-----
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc----------eeEEEEEEEeCCEEEEEEEEcCCCchhh-----
Confidence 344588999999999999998754321 11221100 01222233322 124578999874322
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~ 237 (553)
..........+|++++|+|+.+... .++..+.... .+.|+++|+||+|+.+... ..+...++.
T Consensus 86 -------~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~--- 155 (192)
T 2fg5_A 86 -------HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYA--- 155 (192)
T ss_dssp -------GGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH---
T ss_pred -------HhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH---
Confidence 1222334568999999999988641 2223333322 2689999999999975322 223333332
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+..
T Consensus 156 ---~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 156 ---ESIG-AIVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp ---HTTT-CEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred ---HHcC-CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 2233 4689999999999999999987644
No 99
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.68 E-value=3.9e-10 Score=117.47 Aligned_cols=57 Identities=35% Similarity=0.320 Sum_probs=40.5
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
..++++|.+|||||||||+|.+.. ..++..|++|++.........+ ..++||||+..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK--------------PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC--------------CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--------------CccCCCCCeeeceeEEEEEecCceEEEEeCCCccc
Confidence 479999999999999999998642 2245578888864322221122 46999999864
No 100
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.68 E-value=4.9e-08 Score=90.40 Aligned_cols=151 Identities=17% Similarity=0.034 Sum_probs=92.9
Q ss_pred ccccccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
.+..++..+|...+|++++++..-.. ...|.+.. ..+.....+...+ ....++||+|..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~Dt~G~~------- 70 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI----------GVEFGSKIINVGGKYVKLQIWDTAGQE------- 70 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCS----------EEEEEEEEEEETTEEEEEEEEEECCSG-------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc----------ceEEEEEEEEECCEEEEEEEEeCCCcH-------
Confidence 34458889999999999999765321 11222110 0022233344433 245789998742
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~ 237 (553)
.+..........+|++++|+|+.+... .++..+.... .+.|+++|+||+|+.+... ......++.
T Consensus 71 -----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--- 142 (186)
T 2bme_A 71 -----RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFA--- 142 (186)
T ss_dssp -----GGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH---
T ss_pred -----HHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH---
Confidence 233445566778999999999987431 2333333332 3679999999999975332 222222332
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+ ..++.+||+++.|++++++.|.+
T Consensus 143 ---~~~~-~~~~~~Sa~~~~gi~~l~~~l~~ 169 (186)
T 2bme_A 143 ---QENE-LMFLETSALTGENVEEAFVQCAR 169 (186)
T ss_dssp ---HHTT-CEEEECCTTTCTTHHHHHHHHHH
T ss_pred ---HHcC-CEEEEecCCCCCCHHHHHHHHHH
Confidence 1223 46789999999999999887765
No 101
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.67 E-value=3.8e-08 Score=91.04 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=91.4
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCc--cEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHG--HMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~--~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|...+|++++++..-... ..|.+ ...+.........+.. ..++||+|...|.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~-----------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---- 80 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDP-----------TIEDSYLKHTEIDNQWAILDVLDTAGQEEFS---- 80 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCT-----------TCCEEEEEEEEETTEEEEEEEEECCSCGGGC----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------CccceeEEEEEeCCcEEEEEEEECCCchhhH----
Confidence 345588899999999999988654221 11111 1113333444443332 3469998753221
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVE 236 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~ 236 (553)
......+..+|++++|+|+.+.. ..+...+.... .+.|+++|+||+|+..... ..+...++.
T Consensus 81 --------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-- 150 (183)
T 3kkq_A 81 --------AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-- 150 (183)
T ss_dssp --------SSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH--
T ss_pred --------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH--
Confidence 11223355789999999998752 22333333322 4679999999999976432 222233332
Q ss_pred HHhhcccCceeEEEeccC-CccChhhhHHHHHHh
Q 008807 237 ATTKKKLNVLSVHLTSSK-SLAGIVGVASEIQKE 269 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk-~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+ ++.|++++++.|.+.
T Consensus 151 ----~~~~-~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 151 ----TKYN-IPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp ----HHHT-CCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred ----HHhC-CeEEEeccCCCCCCHHHHHHHHHHH
Confidence 1223 458899999 999999999888754
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.67 E-value=3.3e-08 Score=101.74 Aligned_cols=151 Identities=12% Similarity=0.052 Sum_probs=93.3
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
++.++|..++|++++++...... |... ..|. +.....+........++||+|.. .+.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~--~~~~--~pT~-------~~~~~~~~~~~~~l~i~Dt~G~~------------~~~ 223 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE--IVTT--IPTI-------GFNVETVEYKNISFTVWDVGGQD------------KIR 223 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC--CEEE--EEET-------TEEEEEEEETTEEEEEEECC-----------------C
T ss_pred eEEEECCCCccHHHHHHHHhCCC--CCCc--cccc-------ceEEEEEecCcEEEEEEECCCCH------------hHH
Confidence 68888999999999998765432 2211 1122 44445555555667899998742 222
Q ss_pred HHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcc--c
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKK--L 243 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~--l 243 (553)
......+..+|++|+|+|+.+... .....+..++ .+.|+++|+||+||..... ...+... +.... .
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~i~~~----~~~~~~~~ 298 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDK----LGLHSLRH 298 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHH----HTCTTCCS
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC-HHHHHHH----hchhhhhc
Confidence 223444668999999999987542 2222233322 2679999999999976542 2222222 11111 1
Q ss_pred CceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 244 NVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 244 ~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
....++.+||++|.|+++|++.|.+.+.
T Consensus 299 ~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 299 RNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 1245889999999999999998876543
No 103
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.67 E-value=5.5e-09 Score=108.20 Aligned_cols=156 Identities=15% Similarity=0.214 Sum_probs=96.5
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC-CccEEEecCCCCCccCCC--ccccH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS-HGHMITAVGGNGGYAGGK--QFVSA 168 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~-~~~~~~dTaG~vgf~~~~--~~~l~ 168 (553)
.++..++..++|++++++......+ .+.+-.|.|+ ++....+.... ....++||+|. +... -..+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl-------~p~~g~v~~~~~~~~~l~DtPG~---i~~a~~~~~l~ 227 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTL-------VPNLGMVETDDGRSFVMADLPGL---IEGAHQGVGLG 227 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCC-------CCCEEEEECSSSCEEEEEEHHHH---HHHTTCTTTTH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC-ccccCCcccc-------CceEEEEEeCCCceEEEecCCCC---cccccccchhH
Confidence 3678999999999999987665432 2223335554 55555555543 56788999763 2110 01122
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCC---C--h---hhHHHHHHHh---CCCCEEEEEEcccCCCCCCChhhHHHHHHHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDF---N--G---SFLARIRDLA---GANPIILVVTKVDLLPKGTDFNCVGDWVVEA 237 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~---~--~---s~~~~l~~~~---~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~ 237 (553)
..| +.+ ++.+|++|+|+|++++ + . .+..++.... ..+|+++|+||+|+.... +.+.++ .
T Consensus 228 ~~f---l~~-i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~---e~~~~l-~-- 297 (342)
T 1lnz_A 228 HQF---LRH-IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA---ENLEAF-K-- 297 (342)
T ss_dssp HHH---HHH-HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH---HHHHHH-H--
T ss_pred HHH---HHH-HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH---HHHHHH-H--
Confidence 334 333 4578999999999873 2 1 1223333321 368999999999997432 112222 1
Q ss_pred HhhcccCc-eeEEEeccCCccChhhhHHHHHHhhc
Q 008807 238 TTKKKLNV-LSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 238 ~~~~~l~~-~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
..+.. ..++.+||+++.|+++|++.|.+.+.
T Consensus 298 ---~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 298 ---EKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp ---HHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred ---HHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 11111 35788999999999999999877553
No 104
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.67 E-value=1.5e-08 Score=92.06 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=89.2
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|...+|++++++..-... +.|.+ +. ..+.....+...+. ...++||+|...|.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------- 66 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFIT-----TI-----GIDFKIKTVDINGKKVKLQIWDTAGQERFR------- 66 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-----------------CCEEEEEEESSSCEEEEEEECCTTGGGTS-------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCC-----cc-----ceeEEEEEEEECCEEEEEEEEeCCCChhhh-------
Confidence 467788999999999987654221 11111 11 11333344444332 35678998743221
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK 241 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~ 241 (553)
.........+|++++|+|+.+... .++..+.... .+.|+++|+||+|+...........++. .
T Consensus 67 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~ 135 (170)
T 1g16_A 67 -----TITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA------K 135 (170)
T ss_dssp -----CCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHH------H
T ss_pred -----hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHH------H
Confidence 112233568999999999987531 2333333332 3679999999999954433333333332 1
Q ss_pred ccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 242 KLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 242 ~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 136 ~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 136 ELG-IPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp HHT-CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 123 3688999999999999998887643
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.67 E-value=1.4e-08 Score=110.14 Aligned_cols=153 Identities=12% Similarity=0.027 Sum_probs=97.7
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
+..++.++|..++|++++|+...... +. ..+.|. +.....+...+....++||+|...|.
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~--~~--~~~~T~-------~~~~~~~~~~~~~~~l~Dt~G~~~~~--------- 380 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQ--SV--TTIPTV-------GFNVETVTYKNVKFNVWDVGGQDKIR--------- 380 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSS--CC--CCCCCS-------SEEEEEEESSSCEEEEEEECCCGGGS---------
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCC--CC--CcCCcc-------ceeEEEEEeCCEEEEEEECCCcHHHH---------
Confidence 34578899999999999998764332 11 111222 55566666666778899999854332
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHh-----CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc-
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLA-----GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK- 241 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~- 241 (553)
......+.++|+||+|+|+++... .....+..+. .+.|+|+|+||+||.... ....+.+. +...
T Consensus 381 ---~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~----~~~~~ 452 (497)
T 3lvq_E 381 ---PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEK----LGLTR 452 (497)
T ss_dssp ---GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC-CHHHHHHH----TTCTT
T ss_pred ---HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC-CHHHHHHH----hchhh
Confidence 123345678999999999998531 1222223332 368999999999997543 22222211 1111
Q ss_pred -ccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 242 -KLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 242 -~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
......++.+||++|.|++++++.|.+..
T Consensus 453 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 453 IRDRNWYVQPSCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred hhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11123589999999999999999987654
No 106
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.67 E-value=1.6e-08 Score=100.95 Aligned_cols=158 Identities=18% Similarity=0.124 Sum_probs=97.6
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++..+|..++|++++++...... .|+.+. ...+.....+...++...++||+|...|... . .+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~-~~ 69 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPG----------VTVEKKEGIMEYREKEFLVVDLPGIYSLTAH---S-ID 69 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTT----------SSCEEEEEEEEETTEEEEEEECCCCSCCCSS---C-HH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCC----------eEEEeeEEEEEECCceEEEEeCCCccccccC---C-HH
Confidence 367788999999999998764432 222211 1225555666666667889999987654432 1 22
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCChhh--HHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCcee
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNGSF--LARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLS 247 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~s~--~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (553)
............+|++++|+|++++.... ...+... +..|+++|+||+|+............+ ...++ ..
T Consensus 70 ~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l------~~~lg-~~ 141 (271)
T 3k53_A 70 ELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKM------RKELG-VP 141 (271)
T ss_dssp HHHHHHHHHTTCCSEEEEEEEGGGHHHHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHH------HHHHS-SC
T ss_pred HHHHHHhhhccCCcEEEEEecCCcchhhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHH------HHHcC-Cc
Confidence 22222222236899999999998753221 1222221 238999999999986432111112222 12233 46
Q ss_pred EEEeccCCccChhhhHHHHHHhhc
Q 008807 248 VHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 248 vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
++.+||+++.|++++++.+.+...
T Consensus 142 ~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 142 VIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp EEECBGGGTBTHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHh
Confidence 889999999999999999877554
No 107
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=5.5e-08 Score=92.54 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=93.9
Q ss_pred ccccccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
.+..++..+|..++|++++++..-.. .+.|.+.- ..+.....+...+ ....++||+|.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~l~l~Dt~G~-------- 85 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI----------GVDFMIKTVEINGEKVKLQIWDTAGQ-------- 85 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCC----------SEEEEEEEEEETTEEEEEEEEEECCS--------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc----------ceeEEEEEEEECCEEEEEEEEECCCc--------
Confidence 34568899999999999999864321 11222110 0133333444433 24578899874
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~ 237 (553)
+.+.......+..+|++++|+|+++.. ..++..+.... ...|+++|+||+|+..... ......++.
T Consensus 86 ----~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~--- 158 (201)
T 2ew1_A 86 ----ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFS--- 158 (201)
T ss_dssp ----GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHH---
T ss_pred ----HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHH---
Confidence 223444555677899999999998753 22333343332 3578999999999975332 222233332
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||++|.|++++++.|.+.
T Consensus 159 ---~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 159 ---EAQD-MYYLETSAKESDNVEKLFLDLACR 186 (201)
T ss_dssp ---HHHT-CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ---HHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 1122 457899999999999998887653
No 108
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.66 E-value=5.2e-08 Score=103.62 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=96.9
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC-ccEEEecCCCCCccCCCccccH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH-GHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~-~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
....+..+|..++|++++++..-....-.+......| .+........... ...++||+|...|..... .
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT-------~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~-~-- 102 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT-------TDPVYKSMELHPIGPVTLVDTPGLDDVGELGR-L-- 102 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC--------------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCC-C--
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCee-------eeeEEEEEEECCCCeEEEEECcCCCcccchhH-H--
Confidence 3447889999999999999876643211111111112 2555566665544 678999998754432111 1
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCChh---hHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCc
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNGS---FLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNV 245 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~s---~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~ 245 (553)
.+.. ....+..+|++|+|+|+ ..... ++..+.+ .+.|+++|+||+|+...... +...++ ...++
T Consensus 103 -~~~~-~~~~l~~aD~vllVvD~-~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l------~~~~g- 169 (423)
T 3qq5_A 103 -RVEK-ARRVFYRADCGILVTDS-APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLY------ESRYE- 169 (423)
T ss_dssp -CHHH-HHHHHTSCSEEEEECSS-SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHS------SCCTT-
T ss_pred -HHHH-HHHHHhcCCEEEEEEeC-CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHH------HHHcC-
Confidence 2222 23345689999999999 33322 2333333 37899999999999866532 111111 23334
Q ss_pred eeEEEeccCCccChhhhHHHHHHhh
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..++.+||++|.|++++++.|.+..
T Consensus 170 ~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 170 AKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp CCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999998765
No 109
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.65 E-value=2.8e-09 Score=98.44 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=86.1
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec--CCccEEEecCCCCCccCCCccccH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL--SHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l--~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
..++..+|..++|++++++...... +. .....|. .+.....+... .....++||+|...|.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~--~~-~~~~~t~------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------- 70 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT--FP-TDYVPTV------FDNFSANVVVNGATVNLGLWDTAGQEDYN-------- 70 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC--CC-----------------CBCCCC-------CEEECCCC-CTTT--------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CC-CCCCCee------eeeEEEEEEECCEEEEEEEEECCCChhhh--------
Confidence 3578888999999999997654221 11 1000000 01111111111 1234589998753322
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCC-----------ChhhHH
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGT-----------DFNCVG 231 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-----------~~~~~~ 231 (553)
.........+|++++|+|+.+... .+...+.....+.|+++|+||+|+.+... ......
T Consensus 71 ----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 71 ----RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp ----TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred ----hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 112234568999999999987531 23344444334789999999999975421 111122
Q ss_pred HHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 232 DWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 232 ~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
++. ..++...++.+||+++.|++++++.|.+.
T Consensus 147 ~~~------~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 147 ELK------KLIGAPAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp HHH------HHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHH------HHcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 221 12233467899999999999999888653
No 110
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.64 E-value=1.2e-07 Score=89.47 Aligned_cols=154 Identities=16% Similarity=0.059 Sum_probs=92.8
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|..++|++++++...... ..+.+. ...+.....+...+. ...++||+|...|
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----- 85 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE----------NPEDTYERRIMVDKEEVTLVVYDIWEQGDA----- 85 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT----------SCTTEEEEEEEETTEEEEEEEECCCCCSGG-----
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC----------cccceEEEEEEECCEEEEEEEEecCCCccc-----
Confidence 445688999999999999998764211 111111 112444444444332 2356799875322
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVE 236 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~ 236 (553)
...+. ......+|++++|+|+.+.. ..++..+.... .+.|+++|+||+||..... ..+...++.
T Consensus 86 ---~~~~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-- 157 (195)
T 3cbq_A 86 ---GGWLR---DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-- 157 (195)
T ss_dssp ---GHHHH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH--
T ss_pred ---hhhhH---HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH--
Confidence 11122 22345789999999998743 12333333322 3689999999999975432 222233331
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+.+
T Consensus 158 ----~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 158 ----GTLS-CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp ----HHTT-CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ----HHhC-CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 1223 3678999999999999998886543
No 111
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.64 E-value=5.5e-08 Score=88.13 Aligned_cols=152 Identities=16% Similarity=0.066 Sum_probs=89.9
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|...+|++++++..-... ..|.+.. ..+.......... ....++||+|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~D~~G~~~------- 67 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI----------GAAFLTQTVCLDDTTVKFEIWDTAGQER------- 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS----------SEEEEEEEEEETTEEEEEEEEEECCSGG-------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc----------ceEEEEEEEEECCEEEEEEEEeCCCcHH-------
Confidence 34578889999999999987653211 1111110 0012223333322 2457899987421
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEAT 238 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~ 238 (553)
+..........+|++++|+|+.+... .++..+.... ...|+++|+||+|+.+... ......++.
T Consensus 68 -----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~---- 138 (170)
T 1r2q_A 68 -----YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYA---- 138 (170)
T ss_dssp -----GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH----
T ss_pred -----hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHH----
Confidence 22223344678999999999987531 1222232221 3578999999999975432 222233332
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|+++|++.|.+.+
T Consensus 139 --~~~~-~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 139 --DDNS-LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp --HHTT-CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred --HHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1122 4678999999999999999887643
No 112
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.64 E-value=6e-08 Score=102.75 Aligned_cols=167 Identities=9% Similarity=0.010 Sum_probs=93.6
Q ss_pred hhcccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEe----------------------
Q 008807 86 KKKDKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRL---------------------- 143 (553)
Q Consensus 86 r~~~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~---------------------- 143 (553)
+.++....+...|...+|+++++...........+.+. ..+.+-+.-......
T Consensus 5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~-----~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~ 79 (410)
T 1kk1_A 5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEEL-----RRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHET 79 (410)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGG-----GSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBC
T ss_pred ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhh-----cCCcEEEEeeeeeecccccccccccccccccccCccc
Confidence 33455568889999999999999876421111111110 000011111111111
Q ss_pred -cCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCC--ChhhHHHH--HHHhCCCCEEEEEEcc
Q 008807 144 -LSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDF--NGSFLARI--RDLAGANPIILVVTKV 218 (553)
Q Consensus 144 -l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~--~~s~~~~l--~~~~~~~pvIlVlNKi 218 (553)
......++||+|. +.|..........+|++|+|+|+.+. ...-.+.+ ....+..|+++|+||+
T Consensus 80 ~~~~~i~iiDtPGh------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~ 147 (410)
T 1kk1_A 80 EFVRRVSFIDAPGH------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKI 147 (410)
T ss_dssp EEEEEEEEEECSSH------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECG
T ss_pred ccccEEEEEECCCh------------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECc
Confidence 0134678999862 45555555556688999999999874 22222222 1223556899999999
Q ss_pred cCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 219 DLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 219 DLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
|+.+.+....... .+.+.+.........++.+||+++.|+++|++.|.+..
T Consensus 148 Dl~~~~~~~~~~~-~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 148 ELVDKEKALENYR-QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp GGSCHHHHHHHHH-HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHH-HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 9975431111111 11111111112235689999999999999999887643
No 113
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.64 E-value=4.5e-08 Score=92.64 Aligned_cols=152 Identities=16% Similarity=0.075 Sum_probs=90.9
Q ss_pred cccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCC
Q 008807 88 KDKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGK 163 (553)
Q Consensus 88 ~~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~ 163 (553)
..+..++..+|...+|++++++..-... ..|.+ +. ..+.........+ ....++||+|.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~-----t~-----~~~~~~~~~~~~~~~~~l~l~Dt~G~------- 84 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNH-----TI-----GVEFGSRVVNVGGKTVKLQIWDTAGQ------- 84 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC----------------------CCEEEEEEEETTEEEEEEEECCTTH-------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCC-----cc-----cceeEEEEEEECCeeeEEEEEcCCCc-------
Confidence 3455688999999999999998654321 11111 10 0123333333333 34678899763
Q ss_pred ccccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHH
Q 008807 164 QFVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVE 236 (553)
Q Consensus 164 ~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~ 236 (553)
+.+.......+..+|++|+|+|+.+.. ..++..+.... .+.|+++|+||+|+..... ......++.
T Consensus 85 -----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-- 157 (200)
T 2o52_A 85 -----ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFA-- 157 (200)
T ss_dssp -----HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHH--
T ss_pred -----HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHH--
Confidence 223322334467899999999998753 12233333322 3678999999999975432 222222332
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+ ..++.+||+++.|++++++.|.+
T Consensus 158 ----~~~~-~~~~~~SA~~g~gi~~l~~~l~~ 184 (200)
T 2o52_A 158 ----QENE-LMFLETSALTGENVEEAFLKCAR 184 (200)
T ss_dssp ----HHTT-CEEEEECTTTCTTHHHHHHHHHH
T ss_pred ----HHcC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence 1223 46789999999999999888764
No 114
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.63 E-value=2.7e-08 Score=91.28 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=90.5
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
+..++..+|...+|++++++..-.. -+..... ....+.....+...+. ...++||+|...|. ..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~--~~~~~~~-------~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----~~ 73 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS--YFVSDYD-------PTIEDSYTKICSVDGIPARLDILDTAGQEEFG-----AM 73 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS--SCCSSCC-------TTCCEEEEEEEEETTEEEEEEEEECCCTTTTS-----CC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC--cCccccC-------CCcCceEEEEEEECCEEEEEEEEECCCchhhH-----HH
Confidence 3457888899999999999765432 1111100 0112333344444432 45689998853321 11
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATT 239 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~ 239 (553)
.......+|.+++|+|+.+... .+...+.... .+.|+++|+||+|+...... ......+.
T Consensus 74 -------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----- 141 (181)
T 2fn4_A 74 -------REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG----- 141 (181)
T ss_dssp -------HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----
T ss_pred -------HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----
Confidence 1223457899999999987431 2222332222 36799999999999764321 22222221
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 142 -~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 142 -ASHH-VAYFEASAKLRLNVDEAFEQLVRA 169 (181)
T ss_dssp -HHTT-CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred -HHcC-CeEEEecCCCCCCHHHHHHHHHHH
Confidence 1223 468899999999999999887654
No 115
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.63 E-value=1.1e-08 Score=108.12 Aligned_cols=170 Identities=12% Similarity=0.055 Sum_probs=95.1
Q ss_pred cccccccccCCCcccccCccccccCC----CCCcccCCchhhHhh---hccCccceEEEEEEe-----cCCccEEEecCC
Q 008807 88 KDKVLKVNSAVASCYGCGAPLQTSES----DAPGYVDPDTYELKK---KHHQFKTVLCGRCRL-----LSHGHMITAVGG 155 (553)
Q Consensus 88 ~~~~~~~~~~~~~C~GCG~~LQ~~d~----~~~GY~~~~~f~t~~---~~~~~rd~ic~Rc~~-----l~~~~~~~dTaG 155 (553)
+....++..+|...+|++++++.... ...||.......+.. ......+..|..|.. ......++||+|
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 44556888999999999999987643 123444322111000 000000011111111 013467899987
Q ss_pred CCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-h-hhHHHH--HHHhCCCCEEEEEEcccCCCCCCChhhHH
Q 008807 156 NGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-G-SFLARI--RDLAGANPIILVVTKVDLLPKGTDFNCVG 231 (553)
Q Consensus 156 ~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-~-s~~~~l--~~~~~~~pvIlVlNKiDLl~~~~~~~~~~ 231 (553)
. +.|..........+|++|+|+|+.+.. . .....+ ....+.+|+++|+||+|+.+.+. .....
T Consensus 85 h------------~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~-~~~~~ 151 (403)
T 3sjy_A 85 H------------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEE-ALSQY 151 (403)
T ss_dssp C------------GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH-HHHHH
T ss_pred c------------HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHH-HHHHH
Confidence 4 233334444456899999999999753 2 222222 12235579999999999985431 11111
Q ss_pred HHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 232 DWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 232 ~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
+.+.+.+.........++.+||++|.|+++|++.|.+.+
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 222222221222235689999999999999998887643
No 116
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.63 E-value=3.4e-08 Score=98.98 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=95.1
Q ss_pred cccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++..+|..++|++++++..... .+|.++- .| .+.....+.. +....++||+|...|... ...+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg---~t-------v~~~~~~~~~-~~~l~l~DtpG~~~~~~~---~~~e 69 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPG---VT-------VERKSGLVKK-NKDLEIQDLPGIYSMSPY---SPEA 69 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSC---CC-------CSCEEEECTT-CTTEEEEECCCCSCSSCS---SHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCC---Cc-------EEEEEEEEec-CCeEEEEECCCcCccCCC---ChHH
Confidence 46788899999999999877543 2232221 11 1334444444 567889999998655322 1223
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCChh--hHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCcee
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNGS--FLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLS 247 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~s--~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (553)
.+...... ..++|+|++|+|+++.... +...+.. .+.|+++|+||+|+............+. ..++ ..
T Consensus 70 ~v~~~~~~-~~~~d~vi~V~D~t~~e~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~------~~lg-~~ 139 (272)
T 3b1v_A 70 KVARDYLL-SQRADSILNVVDATNLERNLYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLS------YHLG-VP 139 (272)
T ss_dssp HHHHHHHH-TTCCSEEEEEEEGGGHHHHHHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHH------HHHT-SC
T ss_pred HHHHHHHh-cCCCCEEEEEecCCchHhHHHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHH------HHcC-CC
Confidence 33222211 1479999999999874321 1222222 3789999999999864321111222221 1223 36
Q ss_pred EEEeccCCccChhhhHHHHHHhh
Q 008807 248 VHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 248 vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
++.+||++|.|+++|++.|.+..
T Consensus 140 vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 140 VVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp EEECBTTTTBSHHHHHHHHHHSC
T ss_pred EEEEEccCCCCHHHHHHHHHHHH
Confidence 89999999999999999987644
No 117
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.63 E-value=4.5e-08 Score=92.61 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=89.8
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|...+|++++++...... ..|.+.. .+.........+. ...++||+|...|.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-----------~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------- 87 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-----------FENYIADIEVDGKQVELALWDTAGQEDYD------- 87 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSS-----------CCCCEEEEEETTEEEEEEEECCCCSGGGT-------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc-----------cceEEEEEEECCEEEEEEEEECCCchhHH-------
Confidence 478889999999999997654321 1121110 1222233333332 45688998753221
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCC------hhhHHHHHHHhCCCCEEEEEEcccCCCCCC-------------Chh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFN------GSFLARIRDLAGANPIILVVTKVDLLPKGT-------------DFN 228 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~------~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-------------~~~ 228 (553)
.........+|++++|+|+.+.. ..+...+.....+.|+++|+||+|+.+... ...
T Consensus 88 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 162 (201)
T 2gco_A 88 -----RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSE 162 (201)
T ss_dssp -----TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHH
T ss_pred -----HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHH
Confidence 11223456899999999998743 123333333334789999999999986421 111
Q ss_pred hHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 229 CVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...++ ...++...++.+||+++.|+++|++.|.+.
T Consensus 163 ~~~~~------~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 163 EGRDM------ANRISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp HHHHH------HHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHH------HHhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 11111 122343368899999999999999888653
No 118
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.63 E-value=5.9e-08 Score=89.31 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=91.4
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
...++..+|...+|++++++..-... ..|.+. ...+.....+.... ....++||+|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------- 73 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQEST----------IGAAFFSQTLAVNDATVKFEIWDTAGQER------- 73 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCC----------SCCSEEEEEEEETTEEEEEEEEECCCSGG-------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCC----------ceeEEEEEEEEECCEEEEEEEEeCCCChh-------
Confidence 34578899999999999987653211 111110 00122333333332 2467899987422
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEAT 238 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~ 238 (553)
+..........+|++++|+|+.+... .++..+.... .+.|+++|+||+|+..... ......++.
T Consensus 74 -----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~---- 144 (181)
T 2efe_B 74 -----YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYA---- 144 (181)
T ss_dssp -----GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHH----
T ss_pred -----hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHH----
Confidence 12223334568999999999987531 2222333221 2678999999999975432 223333332
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+..
T Consensus 145 --~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 145 --QENG-LFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp --HHTT-CEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred --HHcC-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1123 4688999999999999999887644
No 119
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.62 E-value=6.5e-09 Score=99.85 Aligned_cols=152 Identities=13% Similarity=0.026 Sum_probs=90.9
Q ss_pred ccccccccCCCcccccCccccccC-CC-CCcccCCchhhHhhhccCccceEEEEEEec--CCccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSE-SD-APGYVDPDTYELKKKHHQFKTVLCGRCRLL--SHGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d-~~-~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l--~~~~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|..++|++++++..- .. ...|.+..- -+......... .....++||+|...|..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~----------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--- 79 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG----------VEVHPLVFHTNRGPIKFNVWDTAGQEKFGG--- 79 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT----------EEEEEEEEEETTEEEEEEEEEECSGGGTSC---
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc----------eeEEEEEEEECCEEEEEEEEeCCChHHHhH---
Confidence 344588899999999999998621 10 011111100 01111222221 22457899987532221
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHh
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATT 239 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~ 239 (553)
........+|++++|+|+.+.. ..+...+.....+.|+++|+||+||....... ....+.
T Consensus 80 ---------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~----- 144 (221)
T 3gj0_A 80 ---------LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA-KSIVFH----- 144 (221)
T ss_dssp ---------CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG-GGCCHH-----
T ss_pred ---------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH-HHHHHH-----
Confidence 1122345899999999998743 12334444444578999999999997654322 222222
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+.+
T Consensus 145 -~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 145 -RKKN-LQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp -HHHT-CEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred -HHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1112 4688999999999999998887644
No 120
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.62 E-value=1.5e-07 Score=87.81 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=92.3
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|...+|++++++...... ..|.+... .+.....+.... ....++||+|...|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~----------~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-- 87 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG----------IDFKVKTVYRHDKRIKLQIWDTAGQERYRTI-- 87 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC----------CEEEEEEEEETTEEEEEEEEECCSCCSSCCS--
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee----------EEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--
Confidence 344588999999999999997653221 22222110 022223333322 24578999885433211
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~ 237 (553)
....+..+|++++|+|+.+.. ..++..+.... .+.|+++|+||+|+..... ......++.
T Consensus 88 ----------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--- 154 (189)
T 2gf9_A 88 ----------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLA--- 154 (189)
T ss_dssp ----------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH---
T ss_pred ----------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHH---
Confidence 223456899999999998743 12233333322 3689999999999975432 122233332
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..++ ..++.+||+++.|++++++.|.+.
T Consensus 155 ---~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 155 ---DDLG-FEFFEASAKENINVKQVFERLVDV 182 (189)
T ss_dssp ---HHHT-CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ---HHcC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 1123 368999999999999999888654
No 121
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.05 E-value=4.1e-09 Score=99.88 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=87.7
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
+..++..+|..++|++++++..-.+. |. .....+. .+.....+...+. ...++||+|..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~-~~~~~t~------~~~~~~~~~~~~~~~~l~i~Dt~G~~---------- 89 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA--FP-GEYIPTV------FDNYSANVMVDGKPVNLGLWDTAGQE---------- 89 (204)
Confidence 34578999999999999997654321 11 1100010 1222222222222 34478998742
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHH----H-HH
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDW----V-VE 236 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~----~-~~ 236 (553)
.+..........+|++++|+|+.+... .+...+.....+.|+++|+||+|+.+.....+.+.+. + .+
T Consensus 90 --~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~ 167 (204)
T 3th5_A 90 --DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP 167 (204)
Confidence 233333444668999999999987431 2222332222368999999999997643111100000 0 00
Q ss_pred H--HhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 237 A--TTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 237 ~--~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
. ......+...++.+||++|.|++++++.|.+
T Consensus 168 ~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 168 QGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 0 0011223235788999999999999887754
No 122
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.61 E-value=4.1e-08 Score=92.65 Aligned_cols=152 Identities=17% Similarity=0.069 Sum_probs=88.1
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|...+|++++++..-... ..|.+ +. ..+.....+...+ ....++||+|...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-----t~-----~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------- 89 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA-----TL-----GVDFQMKTLIVDGERTVLQLWDTAGQER------- 89 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC--------------------CEEEEEEETTEEEEEEEEECTTCTT-------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCC-----Cc-----cceeEEEEEEECCEEEEEEEEECCCCcc-------
Confidence 34588999999999999998654221 11111 10 0022333343332 2357899987421
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCC-------CCCChhhHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLP-------KGTDFNCVGD 232 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~-------~~~~~~~~~~ 232 (553)
+.......+..+|++|+|+|+.+.. ..++..+.... .+.|+++|+||+||.. .........+
T Consensus 90 -----~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~ 164 (199)
T 2p5s_A 90 -----FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK 164 (199)
T ss_dssp -----CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH
T ss_pred -----hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHH
Confidence 2223444466899999999998743 12223333322 3689999999999962 1111222222
Q ss_pred HHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 233 WVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 233 ~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
+. ...+ ..++.+||+++.|++++++.|.+..
T Consensus 165 ~~------~~~~-~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 165 LA------MTYG-ALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HH------HHHT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH------HHcC-CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 21 1123 3678999999999999998887644
No 123
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.61 E-value=2.5e-07 Score=87.49 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=92.3
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|...+|++++++...... ..|.+.. ..+.....+...+. ...++||+|...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--- 73 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI----------GVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--- 73 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSS----------CCCEEEEEEEETTEEEEEEEECCTTTTTTTCC---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----------cceeEEEEEEECCEEEEEEEEeCCChHHHHHH---
Confidence 44578889999999999997653221 1222110 01333344444332 4678999885433221
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEAT 238 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~ 238 (553)
....+..+|++|+|+|+.+... .++..+.... ...|+++|+||+||..... ......++.
T Consensus 74 ---------~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---- 140 (206)
T 2bcg_Y 74 ---------TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA---- 140 (206)
T ss_dssp ---------CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHH----
T ss_pred ---------HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHH----
Confidence 2234568999999999987531 1223333322 3578999999999976432 222223332
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||++|.|++++++.|.+.
T Consensus 141 --~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 141 --DANK-MPFLETSALDSTNVEDAFLTMARQ 168 (206)
T ss_dssp --HHTT-CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred --HHcC-CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 1223 368899999999999999888654
No 124
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.60 E-value=2.7e-08 Score=94.62 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=89.5
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++..+|..++|++++++...... + ......+ ..+.....+...+ ....++||+|...|..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~--~-~~~~~~t------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------- 88 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE--F-PEVYVPT------VFENYVADIEVDGKQVELALWDTAGQEDYDR-------- 88 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS--C-C-------------CCEEEEEEEETTEEEEEEEEECTTCTTCTT--------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC--C-CCcCCCc------ccceEEEEEEECCEEEEEEEEECCCcHHHHH--------
Confidence 478888999999999997654321 1 1100001 1133333343333 2456889988543221
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCC------hhhHHHHHHHhCCCCEEEEEEcccCCCCCC-------------ChhhH
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFN------GSFLARIRDLAGANPIILVVTKVDLLPKGT-------------DFNCV 230 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~------~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-------------~~~~~ 230 (553)
........+|++++|+|+.+.. ..+...+.....+.|+++|+||+|+.+... .....
T Consensus 89 ----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 89 ----LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp ----TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred ----HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHH
Confidence 1223456899999999998743 123333443334789999999999975421 01111
Q ss_pred HHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 231 GDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 231 ~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.++ ....+...++.+||+++.|+++|++.|.+.
T Consensus 165 ~~~------~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 165 RAM------AVRIQAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp HHH------HHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHH------HHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 111 112333368899999999999999888764
No 125
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.60 E-value=3.3e-08 Score=103.42 Aligned_cols=116 Identities=10% Similarity=0.040 Sum_probs=79.9
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
.+|.++|+.++|++++|+...... ..+.+-.|.|+ ++.-+.+...+.++.++||||++ .. ........
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~-------~~~~g~~~~~~~~i~l~D~pGl~---~~-a~~~~~~g 140 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTL-------VTVPGVIRYKGAKIQMLDLPGII---DG-AKDGRGRG 140 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCC-------CEEEEEEEETTEEEEEEECGGGC---CC------CHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCcee-------eeeeEEEEeCCcEEEEEeCCCcc---CC-chhhhHHH
Confidence 378999999999999999887542 34444457766 89999999988889999998763 22 11222234
Q ss_pred HHHHHHhhhcccEEEEEcccCCCChhh---HHHHHHH---hCCCCEEEEEEcccC
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNGSF---LARIRDL---AGANPIILVVTKVDL 220 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~s~---~~~l~~~---~~~~pvIlVlNKiDL 220 (553)
++.+.. ++++|+|++|||++++...+ ..+|... +..+|.++|+||+|.
T Consensus 141 ~~~l~~-i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 141 KQVIAV-ARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHH-HHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHH-HHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 444554 56899999999999864321 2233222 135788899999996
No 126
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.58 E-value=5.6e-08 Score=98.86 Aligned_cols=59 Identities=36% Similarity=0.326 Sum_probs=44.4
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
..++++|.||||||||+|+|++. ....+++.|+||++.+.......+ ..++||||+..+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~-------------~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV-------------KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS-------------CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------ceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 36999999999999999999975 223467889999986553322233 358999999764
No 127
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.58 E-value=1.5e-07 Score=100.59 Aligned_cols=163 Identities=12% Similarity=-0.038 Sum_probs=93.3
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhh------------------------HhhhccCccceEEEEEEecC
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYE------------------------LKKKHHQFKTVLCGRCRLLS 145 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~------------------------t~~~~~~~rd~ic~Rc~~l~ 145 (553)
...++.++|..++|+++++...-.. .|.+....++ ..++...+.+.....+...+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~-~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYL-TGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH-cCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 4457889999999999998766221 1222111110 00111122344444455556
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh--------hhHHHHHHH-hCCCC-EEEEE
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG--------SFLARIRDL-AGANP-IILVV 215 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~--------s~~~~l~~~-~~~~p-vIlVl 215 (553)
....++||+|. +.|.......+..+|++|+|||+.+... .....+... ..+.| +|+|+
T Consensus 95 ~~~~iiDTPGh------------~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvvi 162 (439)
T 3j2k_7 95 KHFTILDAPGH------------KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLI 162 (439)
T ss_pred eEEEEEECCCh------------HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEe
Confidence 67889999874 3455555555678999999999987431 222222111 12455 89999
Q ss_pred EcccCCCCCCCh---hhHHHHHHHHHhhcccC---ceeEEEeccCCccChhhhHHH
Q 008807 216 TKVDLLPKGTDF---NCVGDWVVEATTKKKLN---VLSVHLTSSKSLAGIVGVASE 265 (553)
Q Consensus 216 NKiDLl~~~~~~---~~~~~~~~~~~~~~~l~---~~~vi~iSAk~g~gi~~Ll~~ 265 (553)
||+|+...+... +.+.+.+.+.+...++. ...++.+||++|.|++++.+.
T Consensus 163 NK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~ 218 (439)
T 3j2k_7 163 NKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDF 218 (439)
T ss_pred ecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccccc
Confidence 999996432211 11112222222222221 246899999999999987653
No 128
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.57 E-value=1e-07 Score=89.15 Aligned_cols=151 Identities=16% Similarity=0.048 Sum_probs=89.1
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
...++..+|...+|++++++..-... ..|.+. . ..+.....+...+ ....++||+|...|.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-----~-----~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----- 84 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-----I-----GVEFGARMVNIDGKQIKLQIWDTAGQESFR----- 84 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC----------C-----CSSEEEEEEEETTEEEEEEEECCTTGGGTS-----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc-----c-----cceeEEEEEEECCEEEEEEEEECCCchhhh-----
Confidence 34578889999999999997653211 111111 0 0123333343332 245788998743221
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEAT 238 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~ 238 (553)
......+..+|++++|+|+.+.. ..++..+.... .+.|+++|+||+|+..... ......++.
T Consensus 85 -------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---- 153 (191)
T 2a5j_A 85 -------SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFA---- 153 (191)
T ss_dssp -------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred -------hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHH----
Confidence 11223356899999999998743 12233333321 3678999999999975332 222233332
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 154 --~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 154 --REHG-LIFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp --HHHT-CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred --HHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 1122 367899999999999998887653
No 129
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.57 E-value=5.7e-08 Score=92.36 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=92.2
Q ss_pred ccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~ 166 (553)
..++..+|...+|++++++...... ..|.+ ...+.........+. ...++||+|...|...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~-----------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---- 73 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-----------TVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL---- 73 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCC-----------SSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCC-----------ccceeEEEEEEECCEEEEEEEEECCCcHHHHHH----
Confidence 3577888999999999987654321 11111 111333334433332 4578999886433211
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCCh------hhHHHHHHHhCCCCEEEEEEcccCCCCCC---------ChhhHH
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNG------SFLARIRDLAGANPIILVVTKVDLLPKGT---------DFNCVG 231 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~------s~~~~l~~~~~~~pvIlVlNKiDLl~~~~---------~~~~~~ 231 (553)
....+..+|++|+|+|+.+... .++..+.....+.|+++|+||+||..... ......
T Consensus 74 --------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~ 145 (212)
T 2j0v_A 74 --------RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGE 145 (212)
T ss_dssp ---------CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHH
T ss_pred --------HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHH
Confidence 2234568999999999987531 33444444334789999999999975421 112222
Q ss_pred HHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 232 DWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 232 ~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
++. ..++...++.+||+++.|++++++.|.+.
T Consensus 146 ~~~------~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 146 ELR------KQIGAAAYIECSSKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp HHH------HHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHH------HHcCCceEEEccCCCCCCHHHHHHHHHHH
Confidence 221 22333468899999999999999888654
No 130
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.56 E-value=6e-08 Score=91.48 Aligned_cols=155 Identities=18% Similarity=0.115 Sum_probs=86.9
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~ 166 (553)
....++..+|...+|++++++..-.+. .......+. ..+.....+...+ ....++||+|...|....
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--- 99 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT---YTESYISTI-----GVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--- 99 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC---CCCHHHHHH-----CCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS---
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC---CCCCcCCcc-----cceEEEEEEEECCEEEEEEEEECCCcHhHHHHH---
Confidence 345688999999999999998765321 111111111 1144445555543 246788998854332211
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHHHh
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGTD-FNCVGDWVVEATT 239 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~~~ 239 (553)
...+..+|++++|+|+.+... .++..+.... .+.|+++|+||+|+.+.... .....++.
T Consensus 100 ---------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----- 165 (199)
T 3l0i_B 100 ---------SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA----- 165 (199)
T ss_dssp ---------CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH-----
T ss_pred ---------HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH-----
Confidence 123468999999999998542 1112222111 25799999999999755321 12222321
Q ss_pred hcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 240 KKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 240 ~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..++ ..++.+||+++.|++++++.|.+..
T Consensus 166 -~~~~-~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 166 -DSLG-IPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp -HTTT-CCBCCCCC---HHHHHHHHHHTTTT
T ss_pred -HHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1223 3578899999999999998886543
No 131
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.56 E-value=8.8e-08 Score=88.91 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=95.7
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
.++..+|...+|++++++...... .++++. ...+.....+...+....++||+|...|... ...+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~ 74 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPG----------VTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN---SIDE 74 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTT----------SCCEEEEEEEEETTEEEEEEECCCCSCCSSS---SHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCC----------eeccceEEEEEeCCcEEEEEECCCcCccccc---cHHH
Confidence 478889999999999998765421 111111 1124455566665666789999987544211 1122
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
.+...... ...+|++++|+|+.++.. ....+..+. .+.|+++|+||+|+...........++. ..++ ..+
T Consensus 75 ~~~~~~~~-~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~-~~~ 145 (188)
T 2wjg_A 75 IIARDYII-NEKPDLVVNIVDATALER-NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE------KILG-VKV 145 (188)
T ss_dssp HHHHHHHH-HHCCSEEEEEEEGGGHHH-HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHH------HHHT-SCE
T ss_pred HHHHHHHh-ccCCCEEEEEecchhHHH-HHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHH------HHhC-CCe
Confidence 23222211 135899999999986432 111222221 3689999999999864322112222321 1122 367
Q ss_pred EEeccCCccChhhhHHHHHHhhcc
Q 008807 249 HLTSSKSLAGIVGVASEIQKEKKG 272 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~~~g 272 (553)
+.+||+++.|++++++.|.+...+
T Consensus 146 ~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 146 VPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp EECBGGGTBSHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCHHHHHHHHHHHHHh
Confidence 899999999999999988776543
No 132
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.56 E-value=1.1e-07 Score=88.86 Aligned_cols=153 Identities=17% Similarity=0.038 Sum_probs=90.9
Q ss_pred cccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCC
Q 008807 88 KDKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGK 163 (553)
Q Consensus 88 ~~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~ 163 (553)
..+..++..+|..++|++++++...... ..|.+.. ..+.......... ....++||+|...|.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI----------GVEFSTRTVMLGTAAVKAQIWDTAGLERYR--- 88 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS----------SEEEEEEEEEETTEEEEEEEEEESCCCTTC---
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc----------ceeEEEEEEEECCEEEEEEEEeCCCchhhh---
Confidence 3445689999999999999997643221 1111110 0022223333321 245689998864321
Q ss_pred ccccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHH
Q 008807 164 QFVSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVE 236 (553)
Q Consensus 164 ~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~ 236 (553)
.........+|++|+|+|+.+... .++..+.... ...|+++|+||+||..... .......+.
T Consensus 89 ---------~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-- 157 (193)
T 2oil_A 89 ---------AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFA-- 157 (193)
T ss_dssp ---------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH--
T ss_pred ---------hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHH--
Confidence 112334568999999999987532 1222222211 3578999999999975432 222233322
Q ss_pred HHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 237 ATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 237 ~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 158 ----~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 158 ----ENNG-LLFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp ----HHTT-CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred ----HHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 1223 468899999999999998887653
No 133
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.55 E-value=2.7e-07 Score=84.57 Aligned_cols=157 Identities=11% Similarity=0.020 Sum_probs=92.3
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~ 166 (553)
.+..++..+|...+|++++++...... ..|.+.. ..+.....+...+....++||+|...|....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--- 72 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGI----------TQHIGAYQVTVNDKKITFLDTPGHEAFTTMR--- 72 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSS----------STTCCCCEEEETTEEEEESCCCSSSSSSCSC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCce----------eEeeeEEEEEeCCceEEEEECCCCHHHHHHH---
Confidence 345578889999999999998764321 1121110 0122223344444556788998864443211
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCC-hhhHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHh-hccc
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFN-GSFLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEATT-KKKL 243 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~-~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~-~~~l 243 (553)
......+|++++|+|+.+.. ......+..+. .+.|+++|+||+|+.... ...+..++.+... ....
T Consensus 73 ---------~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (178)
T 2lkc_A 73 ---------ARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEW 141 (178)
T ss_dssp ---------CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTT
T ss_pred ---------HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHc
Confidence 12346789999999988743 22223333322 368999999999997642 2222222210000 0011
Q ss_pred C-ceeEEEeccCCccChhhhHHHHHHh
Q 008807 244 N-VLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 244 ~-~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
+ ...++.+||+++.|+++|++.|.+.
T Consensus 142 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 142 GGDTIFCKLSAKTKEGLDHLLEMILLV 168 (178)
T ss_dssp TSSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCcccEEEEecCCCCCHHHHHHHHHHh
Confidence 1 1468999999999999999888654
No 134
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=4.6e-07 Score=85.02 Aligned_cols=148 Identities=15% Similarity=0.040 Sum_probs=90.3
Q ss_pred ccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~~ 166 (553)
..++..+|..++|++++++..-... ..|.+. ..+.....+.... ....++||+|...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------- 88 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT-----------LESTYRHQATIDDEVVSMEILDTAGQED-------- 88 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT-----------CCEEEEEEEEETTEEEEEEEEECCCCCC--------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCC-----------CCceEEEEEEECCEEEEEEEEECCCCCc--------
Confidence 4578899999999999997654321 112111 0122333343332 2357899987521
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHH
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEAT 238 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~ 238 (553)
..........+|++++|+|+++.. ..+...+.... .+.|+++|+||+|+..... ......++.
T Consensus 89 -----~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~---- 159 (196)
T 2atv_A 89 -----TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA---- 159 (196)
T ss_dssp -----CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH----
T ss_pred -----ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH----
Confidence 112233456789999999998743 12233333322 3689999999999976422 222233332
Q ss_pred hhcccCceeEEEeccCCcc-ChhhhHHHHHHh
Q 008807 239 TKKKLNVLSVHLTSSKSLA-GIVGVASEIQKE 269 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~-gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++. |++++++.|.+.
T Consensus 160 --~~~~-~~~~~~Sa~~g~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 160 --TELA-CAFYECSACTGEGNITEIFYELCRE 188 (196)
T ss_dssp --HHHT-SEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred --HHhC-CeEEEECCCcCCcCHHHHHHHHHHH
Confidence 1123 468899999999 999999887654
No 135
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.53 E-value=1.8e-07 Score=90.47 Aligned_cols=150 Identities=19% Similarity=0.121 Sum_probs=90.0
Q ss_pred cccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++.++|-...|+.++++..-.+ ...|.+ |. ..+.........+. ...++||+|..-
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~-----Ti-----g~d~~~k~~~~~~~~v~l~iwDtaGqe~--------- 74 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQA-----TI-----GIDFLSKTMYLEDRTIRLQLWDTAGLER--------- 74 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--------------------CEEEEEECSSCEEEEEEECCSCTTT---------
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCC-----cc-----ceEEEEEEEEecceEEEEEEEECCCchh---------
Confidence 47888999999999999864221 112221 11 01333444444333 345889987532
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
|+.........++.+++|.|+.+.. ..++..+.... .+.|++||.||+||..... ..+...++.
T Consensus 75 ---~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a------ 145 (216)
T 4dkx_A 75 ---FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA------ 145 (216)
T ss_dssp ---CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH------
T ss_pred ---hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHH------
Confidence 2222334467899999999998753 23334444333 3578999999999975432 233333332
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..++ ...+.+||++|.||+++++.|.+.+
T Consensus 146 ~~~~-~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 146 KELN-VMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp HHHT-CEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred HHhC-CeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 1223 3468899999999999998887643
No 136
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.53 E-value=3.3e-07 Score=85.54 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=88.0
Q ss_pred ccccccccCCCcccccCccccccCCC--CCcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESD--APGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~--~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~ 164 (553)
.+..++..+|..++|++++++..-.. ...|.+. .+.........+. ...++||+|...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t------------~~~~~~~~~~~~~~~~l~i~Dt~G~~~------ 79 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE------------GGRFKKEIVVDGQSYLLLIRDEGGPPE------ 79 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT------------CEEEEEEEEETTEEEEEEEEECSSSCC------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC------------cceEEEEEEECCEEEEEEEEECCCChh------
Confidence 44558899999999999999643221 1112111 1333344444432 345689987521
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCC---CChhhHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKG---TDFNCVGDWV 234 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~---~~~~~~~~~~ 234 (553)
+. ....+|++++|+|+.+.. ..++..+.... .+.|+++|+||+||.... ...+...++.
T Consensus 80 ------~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~ 148 (184)
T 3ihw_A 80 ------LQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS 148 (184)
T ss_dssp ------HH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH
T ss_pred ------hh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH
Confidence 11 345789999999999753 12223332221 257999999999995322 1222233332
Q ss_pred HHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 235 VEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 235 ~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..++...++.+||+++.|++++++.|.+.
T Consensus 149 ------~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 149 ------TDLKRCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp ------HHTTTCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ------HHcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 22332467899999999999999887653
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.52 E-value=4.6e-08 Score=105.82 Aligned_cols=58 Identities=40% Similarity=0.625 Sum_probs=45.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~ 342 (553)
+.+++++|.||||||||+|+|.+. .++.++++||||+|.+......++ ..|+||||+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~-------------~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNE-------------DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHH-------------TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCC-------------CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 468999999999999999999975 244678899999986543332233 4699999996
No 138
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.52 E-value=7.1e-07 Score=81.93 Aligned_cols=144 Identities=10% Similarity=0.019 Sum_probs=86.7
Q ss_pred ccccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
..++..+|...+|++++++..-... .-|.+. ..+.....+...+. ...++||+|.. .
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~ 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKT-----------ESEQYKKEMLVDGQTHLVLIREEAGAP---------D 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCCCSSC-----------SSSEEEEEEEETTEEEEEEEEECSSSC---------C
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcCCC-----------cceeEEEEEEECCEEEEEEEEECCCCc---------h
Confidence 3478889999999999998653211 112211 11333344444332 35678998742 1
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh----CCCCEEEEEEcccCCCC---CCChhhHHHHHH
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA----GANPIILVVTKVDLLPK---GTDFNCVGDWVV 235 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~----~~~pvIlVlNKiDLl~~---~~~~~~~~~~~~ 235 (553)
......+|++++|+|+.+... .+...+..+. .+.|+++|+||+|+... ........++.
T Consensus 67 --------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~- 137 (178)
T 2iwr_A 67 --------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX- 137 (178)
T ss_dssp --------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH-
T ss_pred --------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH-
Confidence 123457899999999987541 1111233322 25799999999999532 22223333332
Q ss_pred HHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 236 EATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 236 ~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+...++.+||++|.|++++++.|.+
T Consensus 138 -----~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 138 -----ADMKRCSYYETXATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp -----HHHSSEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred -----HhhcCCeEEEEeccccCCHHHHHHHHHH
Confidence 1122256889999999999999888765
No 139
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.51 E-value=7.8e-08 Score=89.42 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=90.0
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
...++..+|..++|++++++..-... ..|.+.. .+.......... ....++||+|...|..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~-----------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---- 70 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-----------FENYTASFEIDTQRIELSLWDTSGSPYYDN---- 70 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS-----------EEEEEEEEECSSCEEEEEEEEECCSGGGTT----
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc-----------ceeEEEEEEECCEEEEEEEEECCCChhhhh----
Confidence 34578888999999999997653221 1122110 022223333322 2357899988533321
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCC------hhhHHHHHHHhCCCCEEEEEEcccCCCC-------------CCC
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFN------GSFLARIRDLAGANPIILVVTKVDLLPK-------------GTD 226 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~------~s~~~~l~~~~~~~pvIlVlNKiDLl~~-------------~~~ 226 (553)
........+|++++|+|+.+.. ..+...+.....+.|+++|+||+|+... ...
T Consensus 71 --------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 142 (184)
T 1m7b_A 71 --------VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVS 142 (184)
T ss_dssp --------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCC
T ss_pred --------hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCC
Confidence 1223456899999999998743 1233334443457899999999999742 111
Q ss_pred hhhHHHHHHHHHhhcccCceeEEEeccC-CccChhhhHHHHHHh
Q 008807 227 FNCVGDWVVEATTKKKLNVLSVHLTSSK-SLAGIVGVASEIQKE 269 (553)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~vi~iSAk-~g~gi~~Ll~~L~~~ 269 (553)
.+...++. ..++...++.+||+ ++.|++++++.|.+.
T Consensus 143 ~~~~~~~~------~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 143 YDQGANMA------KQIGAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp HHHHHHHH------HHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 22222232 12233468899999 689999999887653
No 140
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.51 E-value=1.2e-07 Score=96.56 Aligned_cols=60 Identities=33% Similarity=0.308 Sum_probs=45.6
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC-C--cEEEEcCCccCCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG-G--GKLYDTPGVHLHH 345 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~-~--~~liDTPGi~~~~ 345 (553)
..++++|.||||||||+|+|++. ....+++.|+||++.+....... + ..++||||+..+.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~-------------~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT-------------KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS-------------CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-------------CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 47999999999999999999975 22346888999998665443333 3 3589999997543
No 141
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.50 E-value=3.2e-07 Score=88.27 Aligned_cols=154 Identities=14% Similarity=0.017 Sum_probs=87.3
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCc--cEEEecCCCCCccCCCccccH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHG--HMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~--~~~~dTaG~vgf~~~~~~~l~ 168 (553)
..++.++|..+.|++++++.......-|.... .+ ...+.....+...+.. ..++||+|..+
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~--~~-----~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~---------- 99 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC--EV-----LGEDTYERTLMVDGESATIILLDMWENKG---------- 99 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------CCTTEEEEEEEETTEEEEEEEECCTTTTH----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC--Cc-----cceeeEEEEEEECCeeeEEEEeecCCCcc----------
Confidence 35789999999999999987542111111110 00 0114344444443332 35788877531
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
.++.........+|.+++|+|+.+... .+...+.... .+.|+|+|.||+||..... .......|.
T Consensus 100 -~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a------ 172 (211)
T 2g3y_A 100 -ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA------ 172 (211)
T ss_dssp -HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHH------
T ss_pred -hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHH------
Confidence 111112223456889999999887421 1222222211 3689999999999975322 122111221
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||++|.|++++++.|.+.
T Consensus 173 ~~~~-~~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 173 VVFD-CKFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp HHHT-CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHcC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 1122 357889999999999999888653
No 142
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.50 E-value=3.5e-07 Score=96.80 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=64.6
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHH--HHhCCCCEEEEEEcccCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN--GSFLARIR--DLAGANPIILVVTKVDLL 221 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~--~~~~~~pvIlVlNKiDLl 221 (553)
....++||+|. +.|..........+|++|+|+|+.+.. ..-.+.+. ...+..|+++|+||+|+.
T Consensus 81 ~~i~iiDtPGh------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 81 RRVSFVDSPGH------------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEEEEEECSSH------------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cEEEEEECCCH------------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 34678999862 455555555566789999999998742 22222222 223556899999999998
Q ss_pred CCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 222 PKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
+.+.......+ +.+.+.........++.+||++|.|+++|++.|.+..
T Consensus 149 ~~~~~~~~~~~-i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 149 DEKQAEENYEQ-IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp CTTTTTTHHHH-HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred CHHHHHHHHHH-HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 65432111111 1221221112235689999999999999999887643
No 143
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.49 E-value=9e-08 Score=91.29 Aligned_cols=151 Identities=14% Similarity=0.089 Sum_probs=90.5
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
...++..+|..++|++++++...... ..|.+. ..+.....+.... ....++||+|...|..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---- 91 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT-----------VFENYTASFEIDTQRIELSLWDTSGSPYYDN---- 91 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCC-----------SEEEEEEEEESSSSEEEEEEEEECCSGGGTT----
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCc-----------cceeEEEEEEECCEEEEEEEEeCCCcHhhhH----
Confidence 34578899999999999997654321 111111 0122223333322 2357899988533321
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCC------hhhHHHHHHHhCCCCEEEEEEcccCCCC-------------CCC
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFN------GSFLARIRDLAGANPIILVVTKVDLLPK-------------GTD 226 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~------~s~~~~l~~~~~~~pvIlVlNKiDLl~~-------------~~~ 226 (553)
........+|++|+|+|+.+.. ..+...+.....+.|+++|+||+|+.+. ...
T Consensus 92 --------~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 163 (205)
T 1gwn_A 92 --------VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVS 163 (205)
T ss_dssp --------TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCC
T ss_pred --------HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCC
Confidence 1223456899999999998743 1233344444457899999999999742 111
Q ss_pred hhhHHHHHHHHHhhcccCceeEEEeccC-CccChhhhHHHHHHh
Q 008807 227 FNCVGDWVVEATTKKKLNVLSVHLTSSK-SLAGIVGVASEIQKE 269 (553)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~vi~iSAk-~g~gi~~Ll~~L~~~ 269 (553)
.+...++. ..++...++.+||+ ++.|++++++.|.+.
T Consensus 164 ~~~~~~~~------~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 164 YDQGANMA------KQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp HHHHHHHH------HHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 12222221 12232467899999 689999999887653
No 144
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.48 E-value=1.9e-07 Score=88.07 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=88.9
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|...+|++++++..-... ..|.+. ..+.......... ....++||+|...|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t-----------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--- 88 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPT-----------VENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL--- 88 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCC-----------SEEEEEEEEC----CEEEEEEEECCCCTTCCC---
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCc-----------cceEEEEEEEECCEEEEEEEEECCCccchHHH---
Confidence 44578899999999999998754321 111111 1122223332222 23478999886433221
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh--CCCCEEEEEEcccCCCCCCC-hhhHHHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA--GANPIILVVTKVDLLPKGTD-FNCVGDWVVEA 237 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~-~~~~~~~~~~~ 237 (553)
....+..+|++++|+|+.+... .+...+.... .+.|+++|+||+||.+.... ......+.
T Consensus 89 ---------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~--- 156 (201)
T 3oes_A 89 ---------PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA--- 156 (201)
T ss_dssp ---------CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH---
T ss_pred ---------HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH---
Confidence 1223568999999999987431 1122222111 25799999999999754432 22222221
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+.+
T Consensus 157 ---~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 157 ---ESWG-ATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp ---HHHT-CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ---HHhC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1223 3688999999999999998887643
No 145
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.48 E-value=1.4e-07 Score=88.12 Aligned_cols=149 Identities=9% Similarity=-0.031 Sum_probs=88.3
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~~ 165 (553)
+..++..+|..++|++++++..-... ..|.+ | ..+.......... ....++||+|...|.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~-----t------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----- 83 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDP-----N------LEDTYSSEETVDHQPVHLRVMDTADLDTPR----- 83 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCT-----T------CCEEEEEEEEETTEEEEEEEEECCC---CC-----
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCC-----C------ccceeeEEEEECCEEEEEEEEECCCCCcch-----
Confidence 34578899999999999997653221 11111 1 1122222333322 235679998753221
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh----CCCCEEEEEEcccCCCCCC-ChhhHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA----GANPIILVVTKVDLLPKGT-DFNCVGDWVV 235 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~----~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~ 235 (553)
.. ...+..+|.+++|+|+.+.. ..++..+.... .+.|+++|+||+|+..... ..+...++.
T Consensus 84 ~~--------~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~- 154 (187)
T 3c5c_A 84 NC--------ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA- 154 (187)
T ss_dssp CT--------HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-
T ss_pred hH--------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-
Confidence 11 12356789999999998743 12233333332 4789999999999964322 223333332
Q ss_pred HHHhhcccCceeEEEecc-CCccChhhhHHHHHHh
Q 008807 236 EATTKKKLNVLSVHLTSS-KSLAGIVGVASEIQKE 269 (553)
Q Consensus 236 ~~~~~~~l~~~~vi~iSA-k~g~gi~~Ll~~L~~~ 269 (553)
..++ ..++.+|| +++.|++++++.|.+.
T Consensus 155 -----~~~~-~~~~e~Sa~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 155 -----GRFG-CLFFEVSACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp -----HHHT-CEEEECCSSSCSHHHHHHHHHHHHH
T ss_pred -----HHcC-CcEEEEeecCccccHHHHHHHHHHH
Confidence 1223 36789999 8999999999888654
No 146
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.47 E-value=1.8e-07 Score=86.45 Aligned_cols=59 Identities=32% Similarity=0.479 Sum_probs=43.2
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
+.+++++|.+|||||||+|+|.+.. ...+++.||||++...-....++ ..++||||+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~-------------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE-------------AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC-------------CSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-------------cceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 4579999999999999999998641 22356789999876443322223 46999999854
No 147
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.46 E-value=1.7e-07 Score=101.41 Aligned_cols=164 Identities=14% Similarity=0.016 Sum_probs=92.6
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
...+...|...+|+++++........-..-+ .+........+-+.........+....++||+|. ++
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d-~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh------------~~ 85 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHD-KLPESQKRGITIDIGFSAFKLENYRITLVDAPGH------------AD 85 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSH------------HH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccc-cccccccCccEEecceEEEEECCEEEEEEECCCh------------HH
Confidence 4578888999999999987654321000000 0000000000112212233334456788899762 45
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCChhh-HHHH--HHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhc-ccCce
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNGSF-LARI--RDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKK-KLNVL 246 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~s~-~~~l--~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~-~l~~~ 246 (553)
|.......+..+|++|+|+|+.+..... .+.+ ... .+.|.|+|+||+|+.+.+ ..+.+.+.+.+.+... .+...
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~ip~IvviNK~Dl~~~~-~~~~~~~~l~~~l~~~~~~~~~ 163 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNIPIIVVITKSDNAGTE-EIKRTEMIMKSILQSTHNLKNS 163 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTCCBCEEEECTTSSCHH-HHHHHHHHHHHHHHHSSSGGGC
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCCCEEEEEECCCcccch-hHHHHHHHHHHHHhhhcccccc
Confidence 6666666677999999999998743211 1111 111 357889999999998532 1122222222222222 33235
Q ss_pred eEEEeccCCccChhhhHHHHHHh
Q 008807 247 SVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 247 ~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.++.+||++|.|+++|++.|.+.
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHh
Confidence 68999999999999999888764
No 148
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.46 E-value=7.5e-08 Score=92.66 Aligned_cols=153 Identities=15% Similarity=0.054 Sum_probs=89.7
Q ss_pred ccccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecC--CccEEEecCCCCCccCCCc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLS--HGHMITAVGGNGGYAGGKQ 164 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~--~~~~~~dTaG~vgf~~~~~ 164 (553)
....++..+|...+|++++++...... ..|.+ +. ..+.....+...+ ....++||+|...|..
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~-----t~-----~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--- 77 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKS-----TI-----GVEFATRTLEIEGKRIKAQIWDTAGQERYRA--- 77 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC---
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCC-----cc-----cceeEEEEEEECCEEEEEEEEECCCccchhh---
Confidence 344588999999999999998654321 11111 10 1133334444433 2467899988543321
Q ss_pred cccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHH
Q 008807 165 FVSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEA 237 (553)
Q Consensus 165 ~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~ 237 (553)
........+|++|+|+|+.+... .++..+.... .+.|+++|+||+||..... ......++.
T Consensus 78 ---------~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~--- 145 (223)
T 3cpj_B 78 ---------ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFA--- 145 (223)
T ss_dssp ---------CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHH---
T ss_pred ---------hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHH---
Confidence 12234568999999999987531 1223333322 2578999999999975332 222333332
Q ss_pred HhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 238 TTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 238 ~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+ ..++.+||+++.|++++++.|.+..
T Consensus 146 ---~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 146 ---QENQ-LLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp ---HHTT-CEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred ---HHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1223 4678999999999999998887643
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.46 E-value=2.7e-07 Score=100.88 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=73.7
Q ss_pred cccccccCCCcccccCccccccCC-----CCCcccCC---------chhhHhhhccCccceEEEEEEecCCccEEEecCC
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSES-----DAPGYVDP---------DTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGG 155 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~-----~~~GY~~~---------~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG 155 (553)
+.+.+.++|..++|++++++..-- ...|-+.. ..+......+......+..+...++...++||+|
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 345788999999999999976620 00111110 0011111112223444556667677788999998
Q ss_pred CCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCC
Q 008807 156 NGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPK 223 (553)
Q Consensus 156 ~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~ 223 (553)
...|. ......+..+|.+|+|+|+.+........+...+ .+.|+++|+||+|+...
T Consensus 92 ~~df~------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFT------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCC------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred chhHH------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 64332 2234456789999999999975433322222222 36899999999999644
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.45 E-value=2.1e-07 Score=100.74 Aligned_cols=162 Identities=10% Similarity=0.020 Sum_probs=92.1
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCch-----------------hhHh-------hhccCccceEEEEEEecC
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDT-----------------YELK-------KKHHQFKTVLCGRCRLLS 145 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~-----------------f~t~-------~~~~~~rd~ic~Rc~~l~ 145 (553)
...++.++|..++|+++++...-.+ .|-+.... |+.. +..+.+.+.........+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~-~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD-LNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH-TTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh-cCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4458889999999999999765321 11111100 0000 011222344444455556
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-------hhhHHHH---HHHhCCCCEEEEE
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-------GSFLARI---RDLAGANPIILVV 215 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-------~s~~~~l---~~~~~~~pvIlVl 215 (553)
....++||+|.. .|.......+..+|++|+|+|+.+.. .....+. ....+..|+|+|+
T Consensus 111 ~~~~iiDTPG~~------------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 111 ANFTIVDAPGHR------------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp CEEEEECCCCCG------------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEECCCcH------------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence 678899998752 34444455567899999999998741 1122222 1222446799999
Q ss_pred EcccCCCCCC-ChhhHHHHHHHHHhhcccC--ceeEEEeccCCccChhhhHH
Q 008807 216 TKVDLLPKGT-DFNCVGDWVVEATTKKKLN--VLSVHLTSSKSLAGIVGVAS 264 (553)
Q Consensus 216 NKiDLl~~~~-~~~~~~~~~~~~~~~~~l~--~~~vi~iSAk~g~gi~~Ll~ 264 (553)
||+|+.+... ..+.+.+.+.+.+...++. ...++.+||++|.|++++.+
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 9999976321 1122233332222222221 25689999999999987643
No 151
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.43 E-value=4.8e-07 Score=102.28 Aligned_cols=199 Identities=16% Similarity=0.140 Sum_probs=114.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCcccccCccccccCCCC-----CcccCC---------------
Q 008807 62 DRFLELQKAKEAAKVVVRDSKKKRKKKDKVLKVNSAVASCYGCGAPLQTSESDA-----PGYVDP--------------- 121 (553)
Q Consensus 62 e~~~e~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~C~GCG~~LQ~~d~~~-----~GY~~~--------------- 121 (553)
|.+.....+++......-. .......++..+|...+|++++|+..-... .|-+..
T Consensus 27 ~~li~~inkl~d~l~~lg~-----~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~ 101 (772)
T 3zvr_A 27 EDLIPLVNRLQDAFSAIGQ-----NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYA 101 (772)
T ss_dssp GGHHHHHHHHHHHHHTTTC-----CGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEE
T ss_pred HHHHHHHHHHHHHHHhcCc-----cccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchh
Confidence 6677777776654443211 123455588999999999999988764321 121110
Q ss_pred -------ch---hhHh-----------h--hccCccceEEEEEEecC-CccEEEecCCCCCcc-CCCccccHHHHHHHHH
Q 008807 122 -------DT---YELK-----------K--KHHQFKTVLCGRCRLLS-HGHMITAVGGNGGYA-GGKQFVSADELREKLS 176 (553)
Q Consensus 122 -------~~---f~t~-----------~--~~~~~rd~ic~Rc~~l~-~~~~~~dTaG~vgf~-~~~~~~l~e~~~~~l~ 176 (553)
.. |+.. . ...-..+++.-+++... .+..++||+|+..-. .+.+....+.+.+.+.
T Consensus 102 ~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~ 181 (772)
T 3zvr_A 102 EFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLM 181 (772)
T ss_dssp ECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHH
T ss_pred heeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHH
Confidence 00 1100 0 01123456676766543 357899998763111 1112222345555555
Q ss_pred Hhh-hcccEEEEEcccCCCChhhHH-HHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEec
Q 008807 177 HLR-REKALIVKLVDIVDFNGSFLA-RIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTS 252 (553)
Q Consensus 177 ~~~-~~adlIl~VVD~~d~~~s~~~-~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iS 252 (553)
..+ .++|+||+|+|+.+....-.. .+...+ .+.|+|+|+||+|++++..... ............++..++.+|
T Consensus 182 ~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~---~il~~~~~~l~lg~~~VV~iS 258 (772)
T 3zvr_A 182 QFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDAR---DVLENKLLPLRRGYIGVVNRS 258 (772)
T ss_dssp HHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSH---HHHTTCSSCCSSCEEECCCCC
T ss_pred HHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhH---HHHHHHhhhhhccCCceEEec
Confidence 554 578999999999864321111 222222 3589999999999997654321 111000001123445788999
Q ss_pred cCCccChhhhHHHHHH
Q 008807 253 SKSLAGIVGVASEIQK 268 (553)
Q Consensus 253 Ak~g~gi~~Ll~~L~~ 268 (553)
|++|.|+++|++.|.+
T Consensus 259 A~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 259 QKDIDGKKDITAALAA 274 (772)
T ss_dssp CEESSSSEEHHHHHHH
T ss_pred ccccccchhHHHHHHH
Confidence 9999999999999876
No 152
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.42 E-value=4.2e-07 Score=92.47 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=90.1
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEe-cCCccEEEecCCCCCccCCCccccHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRL-LSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~-l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
.++..+|..++|++++++..-.+...+..+.. ..+.+........ ......++||+|...| ....
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~-------~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~ 69 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRL-------GATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENY 69 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGC-------CCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCc-------CCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhh
Confidence 46788899999999999863322112211111 1122444455443 3345679999885211 0111
Q ss_pred HHHHHHHhhhcccEEEEEcccCCCCh-----hhH---HHHHHHhCCCCEEEEEEcccCCCCCCChh---hHHHHHHHHHh
Q 008807 171 LREKLSHLRREKALIVKLVDIVDFNG-----SFL---ARIRDLAGANPIILVVTKVDLLPKGTDFN---CVGDWVVEATT 239 (553)
Q Consensus 171 ~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~---~~l~~~~~~~pvIlVlNKiDLl~~~~~~~---~~~~~~~~~~~ 239 (553)
+..........+|++|+|+|+.+... .+. ..+.....+.|+++|+||+|+...+.... ...+...+..
T Consensus 70 ~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~- 148 (307)
T 3r7w_A 70 FTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETS- 148 (307)
T ss_dssp HTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHH-
Confidence 13334555678999999999998652 112 22222224789999999999975321110 0001111111
Q ss_pred hcccC--ceeEEEeccCCccChhhhHHHHHH
Q 008807 240 KKKLN--VLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 240 ~~~l~--~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..++ ...++.+||++ .++.+++..+..
T Consensus 149 -~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 149 -SEFGFPNLIGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp -HTTTCCSCEEEECCTTS-SHHHHHHHHHHH
T ss_pred -HHcCCCCeEEEEeeecC-ChHHHHHHHHHH
Confidence 2233 25789999999 677776666554
No 153
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.42 E-value=1.4e-07 Score=93.24 Aligned_cols=170 Identities=11% Similarity=0.033 Sum_probs=99.8
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...++.++|...+|++++++..-.. .++...... ...+++.....+...++...++||+|...+..... ...+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~-~~~~~~~~~-----~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~-~~~~ 93 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK-QAFESKLGS-----QTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCE-ALYK 93 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS-CCSCCCTTS-----CCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCH-HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC-CCcccCCCC-----CceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHH-HHHH
Confidence 3457889999999999999876532 122211000 00123555566777777889999988643322111 1112
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCChh---hHHHHHHHhC---CCCEEEEEE-cccCCCCCCChhh---------HHHH
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNGS---FLARIRDLAG---ANPIILVVT-KVDLLPKGTDFNC---------VGDW 233 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~s---~~~~l~~~~~---~~pvIlVlN-KiDLl~~~~~~~~---------~~~~ 233 (553)
.+.+.+...+..+|++|+|+|+.++... +...+....+ ..|.++|+| |+|+.... ... +.++
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~--~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 94 EVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS--LMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC--HHHHHHHCCCHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc--HHHHHHhcchHHHHHH
Confidence 3344455566789999999999875432 2233433322 468888888 99997432 111 1111
Q ss_pred HHHHHhhcccC-ceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 234 VVEATTKKKLN-VLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 234 ~~~~~~~~~l~-~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
+ +.+. ..+. +.. +.+||+++.|+++|++.|.+...
T Consensus 172 ~-~~~~-~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 172 V-AACG-GRICAFNN-RAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp H-HHTT-TCEEECCT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHhC-CeEEEecC-cccccccHHHHHHHHHHHHHHHH
Confidence 1 1111 1111 112 67899999999999998877554
No 154
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.41 E-value=1.1e-07 Score=102.71 Aligned_cols=61 Identities=36% Similarity=0.433 Sum_probs=27.8
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.+.+++++|.||||||||+|+|++. ....+++.||||++.+......++ ..|+||||+...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~-------------~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~ 294 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ-------------ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREA 294 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------------------CEEEEETTEEEEEEC-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-------------CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcc
Confidence 3557999999999999999999875 234578899999986543332233 469999998653
No 155
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.41 E-value=1.4e-07 Score=88.79 Aligned_cols=162 Identities=13% Similarity=0.046 Sum_probs=87.3
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEE-ecCCccEEEecCCCCCccCCCcccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCR-LLSHGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~-~l~~~~~~~dTaG~vgf~~~~~~~l 167 (553)
.+..++..+|..++|++++++..... |.... +. ........+..... .......++||+|...|....- .
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~---~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--~ 88 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK---MSPNE---TL-FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF--D 88 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC---CCGGG---GG-GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC--C
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc---CCCcc---ee-eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh--h
Confidence 34557889999999999998644321 11110 00 00000011111111 1224568999998644322110 0
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCChhhHHH----HHH---HhCCCCEEEEEEcccCCCCCCCh---hhHHHHHHHH
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNGSFLAR----IRD---LAGANPIILVVTKVDLLPKGTDF---NCVGDWVVEA 237 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~----l~~---~~~~~pvIlVlNKiDLl~~~~~~---~~~~~~~~~~ 237 (553)
.......+|++|+|+|+.+........ +.. ...+.|+++|+||+||.+.+... ..+.....+.
T Consensus 89 -------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~ 161 (196)
T 3llu_A 89 -------YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDD 161 (196)
T ss_dssp -------HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred -------cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHH
Confidence 023345799999999999852222222 222 12468999999999997643111 1111111111
Q ss_pred Hhhc---ccCceeEEEeccCCccChhhhHHHHHH
Q 008807 238 TTKK---KLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 238 ~~~~---~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
+... ..+ ..++.+||++ .|++++++.|.+
T Consensus 162 ~~~~~~~~~~-~~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 162 LADAGLEKLH-LSFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp HHHTTCTTSC-EEEEEECTTS-THHHHHHHHHHH
T ss_pred HHHhhhhcCC-cceEEEEech-hhHHHHHHHHHH
Confidence 1111 233 4678999999 999999988765
No 156
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.40 E-value=4.7e-07 Score=89.16 Aligned_cols=172 Identities=10% Similarity=-0.003 Sum_probs=92.7
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
...++.++|.+++|+++++++.-... .+.....+ ...++......+...+....++||+|..............
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~-~~~~~~~~-----~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR-RFFSRLGA-----TSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC-CC--------------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC-CccccCCC-----CCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHH
Confidence 34588999999999999998765432 11111101 0112244445566666678899998763111000011112
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCChh---hHHHHHHHhC----CCCEEEEEEcccCCCCCCChhhHH----HHHHHHH
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNGS---FLARIRDLAG----ANPIILVVTKVDLLPKGTDFNCVG----DWVVEAT 238 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~s---~~~~l~~~~~----~~pvIlVlNKiDLl~~~~~~~~~~----~~~~~~~ 238 (553)
.+...+......+|++|+|+|+.++... ++..+....+ ..|+|+|.||+||..... .+.+. +.+.+..
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~-~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 94 ERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSL-HDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCH-HHHHHHCCCHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCH-HHHHhhcccHHHHHHH
Confidence 2323333334799999999999875432 2333444322 578999999999965321 11110 0111111
Q ss_pred hhcccCceeEEEeccCC-----ccChhhhHHHHHHhhc
Q 008807 239 TKKKLNVLSVHLTSSKS-----LAGIVGVASEIQKEKK 271 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~-----g~gi~~Ll~~L~~~~~ 271 (553)
...+ ..++.+++.. +.|+++|++.|.+...
T Consensus 173 --~~~g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 173 --AECG-GRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp --HHTT-TCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHcC-CeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 1122 2344444433 5789999998877653
No 157
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.2e-07 Score=105.50 Aligned_cols=161 Identities=11% Similarity=0.056 Sum_probs=94.6
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCch-----------------hhH-------hhhccCccceEEEEEEecC
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDT-----------------YEL-------KKKHHQFKTVLCGRCRLLS 145 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~-----------------f~t-------~~~~~~~rd~ic~Rc~~l~ 145 (553)
...++.++|..++|+++++...-.. .|-+.... ++. .+..+.+.+.....+...+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~-~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYD-LNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSC-SSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHh-cCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 3458889999999999999876433 22222110 000 0112233455555666666
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCC--------ChhhHHHHH--HHhCCCCEEEEE
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDF--------NGSFLARIR--DLAGANPIILVV 215 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~--------~~s~~~~l~--~~~~~~pvIlVl 215 (553)
....++||+|.. .|.......+..+|++|+|||+.+. .......+. ...+..++|+|+
T Consensus 245 ~~~~iiDTPG~e------------~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVv 312 (611)
T 3izq_1 245 ANFTIVDAPGHR------------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 312 (611)
T ss_dssp CEEEEEECCSSS------------CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceEEEEECCCCc------------ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEE
Confidence 778999998852 2444445556789999999999862 122222221 122345699999
Q ss_pred EcccCCCCCC-ChhhHHHHHHHHHhhcccC--ceeEEEeccCCccChhhhH
Q 008807 216 TKVDLLPKGT-DFNCVGDWVVEATTKKKLN--VLSVHLTSSKSLAGIVGVA 263 (553)
Q Consensus 216 NKiDLl~~~~-~~~~~~~~~~~~~~~~~l~--~~~vi~iSAk~g~gi~~Ll 263 (553)
||+|+.+... ....+.+.+...+...++. ...++.+||++|.|++++.
T Consensus 313 NKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 313 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp ECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred ecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 9999986321 1122222222222222221 2468999999999998763
No 158
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.40 E-value=4e-07 Score=90.66 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=44.5
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
..+++++|.+|||||||+|+|++.. ...+++.+|+|.+.........+ ..|+||||+...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~-------------~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER-------------VVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC-------------CSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC-------------cccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 3489999999999999999999752 22356778888876555443333 469999998644
No 159
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.40 E-value=6.3e-07 Score=89.49 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=80.9
Q ss_pred ccccccCCCcccccCccccccCCC---CCcccCC--chhhHhhhccCccceEEEEEEe--cCC--ccEEEecCCCCCccC
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESD---APGYVDP--DTYELKKKHHQFKTVLCGRCRL--LSH--GHMITAVGGNGGYAG 161 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~---~~GY~~~--~~f~t~~~~~~~rd~ic~Rc~~--l~~--~~~~~dTaG~vgf~~ 161 (553)
..++..+|.+.+|+++++++.-.. ...|-.+ ....|. ......... .+. ...++||+|...++.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~-------~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~ 80 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTV-------QVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD 80 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------C-------CCEEEEEEECC--CCEEEEEEECCCCSCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCce-------EEEEEEEEEecCCeEEEEEEEECCCcccccc
Confidence 457889999999999999873221 1112000 001221 222333332 222 467999988644433
Q ss_pred CCc------cccHHHHHHHHHHhh---------hcccEEEEEcccCC-CChhhHHH-HHHHhCCCCEEEEEEcccCCCCC
Q 008807 162 GKQ------FVSADELREKLSHLR---------REKALIVKLVDIVD-FNGSFLAR-IRDLAGANPIILVVTKVDLLPKG 224 (553)
Q Consensus 162 ~~~------~~l~e~~~~~l~~~~---------~~adlIl~VVD~~d-~~~s~~~~-l~~~~~~~pvIlVlNKiDLl~~~ 224 (553)
... +.+.++|...+.+.. ..+|++++++|... ........ +..+....|+|+|+||+|++...
T Consensus 81 ~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 81 NSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPE 160 (274)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHH
Confidence 211 111223333333311 12567788776553 22222222 22232378999999999997543
Q ss_pred CChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhcccceEEecc
Q 008807 225 TDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGS 280 (553)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~ 280 (553)
. .....+.+.+.+...+ ..++.+||+++.|++++.+.|.+..+ ..+||.
T Consensus 161 e-~~~~~~~i~~~l~~~~---i~v~~~sa~~~~~~~~l~~~l~~~~p---~~vv~s 209 (274)
T 3t5d_A 161 E-CQQFKKQIMKEIQEHK---IKIYEFPETDDEEENKLVKKIKDRLP---LAVVGS 209 (274)
T ss_dssp H-HHHHHHHHHHHHHHTT---CCCCCC-----------CHHHHHTCS---EECCCC
T ss_pred H-HHHHHHHHHHHHHHcC---CeEEcCCCCCChhHHHHHHHHhcCCC---cEEEEe
Confidence 2 1112122222222222 34677899999999999988876543 456664
No 160
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.39 E-value=2.3e-07 Score=91.99 Aligned_cols=57 Identities=28% Similarity=0.415 Sum_probs=42.8
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
+++++|.+|||||||+|+|.+. ...++.+||+|.+.........+ ..|+||||+...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~--------------~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~ 61 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA--------------NQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL 61 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT--------------SEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC--------------CCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccc
Confidence 6899999999999999999875 12367789999875444332233 469999998644
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.39 E-value=2.6e-07 Score=97.74 Aligned_cols=158 Identities=12% Similarity=-0.023 Sum_probs=85.5
Q ss_pred cccccccCCCcccccCccccccCCC--CCcc-cCCchhhHh------hhccCccceEEEEEEecCCccEEEecCCCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESD--APGY-VDPDTYELK------KKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYA 160 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~--~~GY-~~~~~f~t~------~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~ 160 (553)
...++...|...+|+++++...... ..|. .....++.. ...+.+.+.....+...+....++||+|..
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~--- 86 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA--- 86 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG---
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH---
Confidence 4457889999999999998765321 0111 000001000 011122233333344445677899998853
Q ss_pred CCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCC-EEEEEEcccCCCCCCChhhHHHHHHHH
Q 008807 161 GGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANP-IILVVTKVDLLPKGTDFNCVGDWVVEA 237 (553)
Q Consensus 161 ~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~p-vIlVlNKiDLl~~~~~~~~~~~~~~~~ 237 (553)
+|.......+..+|++|+|+|+.+.......+....+ .+.| +++|+||+|+.......+.+.+.+.+.
T Consensus 87 ---------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~ 157 (405)
T 2c78_A 87 ---------DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDL 157 (405)
T ss_dssp ---------GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence 2333344456689999999999876433222222221 3567 889999999975211111111112121
Q ss_pred Hhhccc--CceeEEEeccCCccCh
Q 008807 238 TTKKKL--NVLSVHLTSSKSLAGI 259 (553)
Q Consensus 238 ~~~~~l--~~~~vi~iSAk~g~gi 259 (553)
+...++ ....++.+||++|.|+
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHH
T ss_pred HHHhcccccCCCEEEccHHHhhhh
Confidence 222222 1146899999998774
No 162
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.37 E-value=2.4e-07 Score=92.70 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=43.5
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~~ 344 (553)
.+++++|.+|||||||+|+|.+.. ..++.+||+|.+......... ...|+||||+...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~--------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~ 63 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR--------------QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--------------cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcc
Confidence 479999999999999999998751 246788999987544433222 2469999998653
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.36 E-value=3.8e-07 Score=89.79 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=37.8
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccC-CCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQS-AVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S-~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
..+++++|.+|||||||+|+|++..... .+ ...|||++.........+ ..|+||||+...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~-------------~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFF-------------SRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC----------------------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCcc-------------ccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 3589999999999999999999753211 11 123577765443332233 469999999643
No 164
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.36 E-value=6.9e-07 Score=82.68 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=86.0
Q ss_pred ccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
++..+|...+|++++++..-... .+|.+.- + .+. ..... ....++||+|... ....+....+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---t-------~~~--~~~~~--~~~~l~Dt~G~~~-~~~~~~~~~~~ 67 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV---T-------RKI--IEIEW--KNHKIIDMPGFGF-MMGLPKEVQER 67 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC---T-------TSC--EEEEE--TTEEEEECCCBSC-CTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCc---c-------cee--EEEec--CCEEEEECCCccc-cccCCHHHHHH
Confidence 45677888999999987654321 2222211 1 122 12222 1578999988532 11111112345
Q ss_pred HHHHHHHhh----hcccEEEEEcccCCCCh---hhHH--------HHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHH
Q 008807 171 LREKLSHLR----REKALIVKLVDIVDFNG---SFLA--------RIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDW 233 (553)
Q Consensus 171 ~~~~l~~~~----~~adlIl~VVD~~d~~~---s~~~--------~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~ 233 (553)
+........ ..+++++.|+|...+.. .+.. .+.... .+.|+++|+||+|+.... .....++
T Consensus 68 ~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~ 145 (190)
T 2cxx_A 68 IKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFL 145 (190)
T ss_dssp HHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHH
T ss_pred HHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHH
Confidence 554444333 34567777887654321 1111 111111 368999999999997543 2222232
Q ss_pred HHHHHhhcccCc----eeEEEeccCCccChhhhHHHHHHhh
Q 008807 234 VVEATTKKKLNV----LSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 234 ~~~~~~~~~l~~----~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
. + ..+..+ ..++.+||++|.|++++++.|.+..
T Consensus 146 ~-~---~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 146 A-E---KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp H-H---HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H-H---HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 1 1 112211 2478999999999999998887643
No 165
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.36 E-value=2.8e-07 Score=93.63 Aligned_cols=58 Identities=36% Similarity=0.373 Sum_probs=42.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~ 342 (553)
...+.++|.+|||||||+|+|++.. ...+++.|+||++.+.-.....+ ..++||||+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~-------------~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK-------------ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS-------------EEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-------------ccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 3479999999999999999999751 22467789999865432222223 3589999986
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.34 E-value=1.1e-06 Score=85.54 Aligned_cols=129 Identities=11% Similarity=0.029 Sum_probs=75.0
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
....++.++|.+.+|++++++..-.... +...... .....+.....+...+....++||+|....... .....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~-----~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~-~~~~~ 99 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAA-----KSITKKCEKRSSSWKETELVVVDTPGIFDTEVP-NAETS 99 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC------------CCSCEEEEEEETTEEEEEEECCSCC------CHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCC-----CceeeeEEEEEEEeCCceEEEEECCCccCCCCC-HHHHH
Confidence 3455889999999999999987654322 1111100 001224555566666667889999886321111 11123
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCChh---hHHHHHHHhC---CCCEEEEEEcccCCCCC
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFNGS---FLARIRDLAG---ANPIILVVTKVDLLPKG 224 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~~s---~~~~l~~~~~---~~pvIlVlNKiDLl~~~ 224 (553)
+.+.+.+......+|++|+|+|+.++... ++..+....+ ..|+++|+||+|++...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 45555555556678999999999766533 2233322221 35899999999998654
No 167
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.33 E-value=1.7e-07 Score=100.86 Aligned_cols=61 Identities=36% Similarity=0.571 Sum_probs=40.0
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.+.+++++|.||||||||+|+|++. ....++..||||++.+......++ ..|+||||+...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~-------------~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~ 285 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS-------------DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET 285 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH-------------HBSCCSCCTTCCHHHHHHEEEETTEEEEECC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC-------------CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccc
Confidence 4557999999999999999999975 234578889999986432221223 459999998643
No 168
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.33 E-value=6.2e-07 Score=84.33 Aligned_cols=154 Identities=13% Similarity=0.021 Sum_probs=84.7
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCc--cEEEecCCCCCccCCCccccH
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHG--HMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~--~~~~dTaG~vgf~~~~~~~l~ 168 (553)
..++.++|..+.|++++++.......-|.... .+ ...+.....+...+.. ..++||+|..+..+. ..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~----~~ 74 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX--EV-----LGEDTYERTLMVDGESATIILLDMWENKGENEW----LH 74 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC------GG-----GCTTEEEEEEEETTEEEEEEEECCCCC----CT----TG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccc--cc-----cceeEEEEEEEECCeEEEEEEEEeccCcchhhh----HH
Confidence 35788999999999999976531101111110 00 0114444445444332 357799876542111 11
Q ss_pred HHHHHHHHHhhhcccEEEEEcccCCCC-----hhhHHHHHHHh--CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 169 DELREKLSHLRREKALIVKLVDIVDFN-----GSFLARIRDLA--GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~d~~-----~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
......+|.+++|+|+.+.. ..+...+.... .+.|+++|.||+||..... .......+ .
T Consensus 75 -------~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~------a 141 (192)
T 2cjw_A 75 -------DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX------A 141 (192)
T ss_dssp -------GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHH------H
T ss_pred -------HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHH------H
Confidence 11234578888888887642 12222333322 3579999999999975322 11111111 1
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||++|.|++++++.|.+.
T Consensus 142 ~~~~-~~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 142 VVFD-XKFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp HHTT-CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHhC-CceEEeccccCCCHHHHHHHHHHH
Confidence 1222 357889999999999999887653
No 169
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.33 E-value=4.3e-07 Score=90.97 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=43.2
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee-cCCcEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF-LGGGKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~-~~~~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|.+. ...++.+||+|.+....... .....++||||...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~--------------~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~ 61 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH--------------NQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYS 61 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC--------------CCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC--------------CCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCc
Confidence 36899999999999999999864 12367889999976544432 22457999999854
No 170
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.33 E-value=7.3e-07 Score=90.34 Aligned_cols=125 Identities=16% Similarity=0.093 Sum_probs=74.3
Q ss_pred CCccEEEecCCCCCccC-CCccccHHHHHHHHHHhhhcccEEEEEcccCCC--ChhhHHHHHHHh--CCCCEEEEEEccc
Q 008807 145 SHGHMITAVGGNGGYAG-GKQFVSADELREKLSHLRREKALIVKLVDIVDF--NGSFLARIRDLA--GANPIILVVTKVD 219 (553)
Q Consensus 145 ~~~~~~~dTaG~vgf~~-~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~--~~s~~~~l~~~~--~~~pvIlVlNKiD 219 (553)
..+..++||+|...... ..+....+.+......++.++|++++|+|..+. .......+...+ .+.|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 35688999988632110 112234567778888888899999999997432 211111233232 3689999999999
Q ss_pred CCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCC---ccChhhhHHHHHHhhcc
Q 008807 220 LLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKS---LAGIVGVASEIQKEKKG 272 (553)
Q Consensus 220 Ll~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~---g~gi~~Ll~~L~~~~~g 272 (553)
+.+.... ..+++.......+.++..+..+||.+ +.|++++++.+.+.++.
T Consensus 210 l~~~~~~---~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 210 LMDKGTD---AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SSCSSCC---CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cCCcchH---HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 9865532 12222110001113344566677777 78999999888776643
No 171
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.32 E-value=7.9e-07 Score=88.18 Aligned_cols=60 Identities=30% Similarity=0.470 Sum_probs=43.1
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
..+++++|.+|||||||+|+|++.. ...+++.+++|.+.........+ ..|+||||+...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~-------------~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ-------------VVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC-------------CSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-------------CcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 3589999999999999999999752 22356678888765544433333 469999998654
No 172
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.32 E-value=5.8e-07 Score=98.47 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=88.4
Q ss_pred cccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEE-------EEe----cCCccEEEecCCC
Q 008807 88 KDKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGR-------CRL----LSHGHMITAVGGN 156 (553)
Q Consensus 88 ~~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~R-------c~~----l~~~~~~~dTaG~ 156 (553)
..+..++..+|..++|++++++...... |. .....|. ...+... +.. ......++||+|.
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~--~~-~~~~~t~------g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~ 108 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGET--FD-PKESQTH------GLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQ 108 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC--------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCC--CC-CCCCCcc------ceEEEEeccccccceeecCCCceEEEEEEECCcH
Confidence 3445689999999999999998765432 11 0000010 0111111 001 1245678999885
Q ss_pred CCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC--hhhHHHHHHHhCCCCEEEEEEcccCCCCCC-ChhhHHHH
Q 008807 157 GGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN--GSFLARIRDLAGANPIILVVTKVDLLPKGT-DFNCVGDW 233 (553)
Q Consensus 157 vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~--~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~-~~~~~~~~ 233 (553)
..|.. +... .+..+|++|+|+|++++. ..+...+.....+.|+|+|+||+|+..... ....+.++
T Consensus 109 e~~~~-----~~~~-------~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~ 176 (535)
T 3dpu_A 109 EIMHA-----SHQF-------FMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINER 176 (535)
T ss_dssp CTTTT-----TCHH-------HHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHH
T ss_pred HHHHH-----HHHH-------HccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHH
Confidence 44332 1122 245789999999998753 234445555445689999999999976543 22222222
Q ss_pred HHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 234 VVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 234 ~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
+ ..++ ..++.+||+++.|+++|++.|.+...
T Consensus 177 ----~--~~~~-~~~~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 177 ----F--PAIE-NRFHRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp ----C--GGGT-TCEEECCC-----CTTHHHHHHHHHT
T ss_pred ----H--HhcC-CceEEEecCcccCHHHHHHHHHHHHh
Confidence 1 2223 35899999999999999999887554
No 173
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.29 E-value=6.4e-07 Score=83.33 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=84.4
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEe-----cCCccEEEecCCCCCccCCCccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRL-----LSHGHMITAVGGNGGYAGGKQFV 166 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~-----l~~~~~~~dTaG~vgf~~~~~~~ 166 (553)
.++..+|...+|++++++.......-+... ...|. ..+........ ......++||+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~-~~~t~-----g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------- 66 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGM-QSATV-----GIDVKDWPIQIRDKRKRDLVLNVWDFAGR---------- 66 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------C-----SEEEEEEEC---------CEEEEEEECSH----------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCC-cceec-----cEEeEEeeeccccCCCCceEEEEEecCCC----------
Confidence 367788999999999998765421111110 00010 00111111111 1234578899763
Q ss_pred cHHHHHHHHHHhhhcccEEEEEcccCCCChhh------HHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhh
Q 008807 167 SADELREKLSHLRREKALIVKLVDIVDFNGSF------LARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTK 240 (553)
Q Consensus 167 l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~------~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~ 240 (553)
+.+.......+..++++++|+|+++...++ +..+.....+.|+++|.||+|+...........+. .+.+ .
T Consensus 67 --~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~-~ 142 (184)
T 2zej_A 67 --EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKI-TKEL-L 142 (184)
T ss_dssp --HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHH-HHHT-T
T ss_pred --HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHH-HHHH-H
Confidence 233332333455789999999998753222 22232222468999999999986432100000111 1111 1
Q ss_pred cccCce---eEEEeccCCcc-ChhhhHHHHHHhh
Q 008807 241 KKLNVL---SVHLTSSKSLA-GIVGVASEIQKEK 270 (553)
Q Consensus 241 ~~l~~~---~vi~iSAk~g~-gi~~Ll~~L~~~~ 270 (553)
...+.. .++.+||+++. |+++|++.|.+.+
T Consensus 143 ~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 143 NKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp TCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred HhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 223332 37899999996 9999988886544
No 174
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.28 E-value=4.7e-07 Score=86.57 Aligned_cols=61 Identities=26% Similarity=0.262 Sum_probs=44.1
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee---cCCcEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF---LGGGKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~---~~~~~liDTPGi~~~ 344 (553)
..+++++|.+|||||||+|+|++... ...++..||||++....... .....|+||||+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKR------------LAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSS------------SSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCc------------ceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 34899999999999999999987521 12467789999874433322 134579999998543
No 175
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.26 E-value=1.1e-06 Score=81.57 Aligned_cols=57 Identities=30% Similarity=0.380 Sum_probs=43.2
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|++.. ....++.+|+|.+.. .........++||||+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~-------------~~~~~~~~~~t~~~~-~~~~~~~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK-------------IAFVSKTPGKTRSIN-FYLVNSKYYFVDLPGYGY 80 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC-------------CSCCCSSCCCCCCEE-EEEETTTEEEEECCCBSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc-------------cccccCCCCCccCeE-EEEECCcEEEEECCCCcc
Confidence 379999999999999999998752 123567789998643 333455678999999753
No 176
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.26 E-value=7e-07 Score=83.25 Aligned_cols=60 Identities=28% Similarity=0.357 Sum_probs=37.0
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~~ 344 (553)
..+++++|.+|||||||+|+|++... ...+++.||+|.+..... ......++||||+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~------------~~~~~~~~~~t~~~~~~~-~~~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKN------------LARTSSKPGKTQTLNFYI-INDELHFVDVPGYGFA 82 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------------------CCEEEEE-ETTTEEEEECCCBCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC------------ccccCCCCCceeeEEEEE-ECCcEEEEECCCCCcc
Confidence 34899999999999999999997521 123456788998644333 3556789999997543
No 177
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.26 E-value=6.8e-07 Score=88.67 Aligned_cols=58 Identities=29% Similarity=0.315 Sum_probs=42.9
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
.+++++|.+|||||||+|+|.+.. ..++.+||+|.+.........+ ..|+||||....
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~--------------~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK--------------QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC--------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC--------------CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 479999999999999999998741 1256789999875544432223 469999998543
No 178
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.25 E-value=1.7e-06 Score=90.51 Aligned_cols=147 Identities=8% Similarity=-0.068 Sum_probs=87.8
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELR 172 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~ 172 (553)
.+.+.|...+|+++++...- ..|-+- +.....+...+....++||+|..- |.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--~~giTi--------------~~~~~~~~~~~~~i~iiDtPGh~~------------f~ 74 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--KKGTSS--------------DITMYNNDKEGRNMVFVDAHSYPK------------TL 74 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--EEEEES--------------SSEEEEECSSSSEEEEEECTTTTT------------CH
T ss_pred EEEEECCCCCCHHHHHHHHH--hCCEEE--------------EeeEEEEecCCeEEEEEECCChHH------------HH
Confidence 67888899999999987665 122221 333334445556788999998532 22
Q ss_pred HHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCE-EEEEE-cccCCCCCCChhhHHHHHHHHHhhcccCceeE
Q 008807 173 EKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPI-ILVVT-KVDLLPKGTDFNCVGDWVVEATTKKKLNVLSV 248 (553)
Q Consensus 173 ~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pv-IlVlN-KiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~v 248 (553)
..+......+|++|+||| .+.......+...++ .+.|. |+|+| |+|+ +.+ ....+.+-+.+.+....+....+
T Consensus 75 ~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~-~~~~~~~~i~~~l~~~~~~~~~i 151 (370)
T 2elf_A 75 KSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMH-AIDELKAKLKVITSGTVLQDWEC 151 (370)
T ss_dssp HHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHH-HHHHHHHHHHHHTTTSTTTTCEE
T ss_pred HHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHH-HHHHHHHHHHHHHHhcCCCceEE
Confidence 223334568999999999 543322122211111 35676 99999 9999 432 11111111211121112223578
Q ss_pred EE--eccCC---ccChhhhHHHHHHhh
Q 008807 249 HL--TSSKS---LAGIVGVASEIQKEK 270 (553)
Q Consensus 249 i~--iSAk~---g~gi~~Ll~~L~~~~ 270 (553)
+. +||++ +.|+++|++.|.+..
T Consensus 152 i~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 152 ISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp EECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred EecccccccCcCCCCHHHHHHHHHhhc
Confidence 99 99999 999999998887654
No 179
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.25 E-value=8.4e-07 Score=82.13 Aligned_cols=53 Identities=34% Similarity=0.454 Sum_probs=41.4
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCcc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVH 342 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~ 342 (553)
+++++|.+|||||||+|+|.+.. ..++..||+|.+...+.. ....++||||+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~--------------~~~~~~~~~t~~~~~~~~--~~~~l~Dt~G~~ 55 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK--------------VRRGKRPGVTRKIIEIEW--KNHKIIDMPGFG 55 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC--------------CSSSSSTTCTTSCEEEEE--TTEEEEECCCBS
T ss_pred EEEEECCCCCCHHHHHHHHhCcC--------------CccCCCCCccceeEEEec--CCEEEEECCCcc
Confidence 68999999999999999998642 224556888887666553 367899999974
No 180
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.24 E-value=1e-06 Score=80.35 Aligned_cols=57 Identities=32% Similarity=0.399 Sum_probs=36.1
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
..++++|.+|||||||+|+|.+.. ..++..||+|.+.........+ ..++||||...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN--------------VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS--------------SSCC-----CCCCCEEEEEETTEEEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--------------eeccCCCCcceeeeEEEEEECCcEEEEEECCCccc
Confidence 468999999999999999998641 1245678888764332221122 46999999754
No 181
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.24 E-value=1.5e-06 Score=90.05 Aligned_cols=109 Identities=15% Similarity=0.004 Sum_probs=59.8
Q ss_pred CCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCC
Q 008807 145 SHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKG 224 (553)
Q Consensus 145 ~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~ 224 (553)
+....++||+|+. . + . . .+.+.+|++++|+|+.+.... ..+...+-..|.++|+||+|+.+..
T Consensus 166 ~~~~iliDT~Gi~---~--~---~----~---~l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 166 GYDIILIETVGVG---Q--S---E----F---AVADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIV 228 (349)
T ss_dssp TCSEEEEECCCC-------C---H----H---HHHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHH
T ss_pred CCCEEEEECCCcc---h--h---h----h---hHHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCch
Confidence 4566899997742 1 1 1 1 124588999999998764321 1121111246789999999996421
Q ss_pred CChhhHHHHHHHHHhhcc----cCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 225 TDFNCVGDWVVEATTKKK----LNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~----l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
........ +...+.... .....++.+||+++.|+++|++.|.+...
T Consensus 229 ~~~~~~~~-l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 229 PARRIQAE-YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHH-HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 10001111 111111000 11246889999999999999999987653
No 182
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.23 E-value=1.1e-06 Score=85.51 Aligned_cols=59 Identities=22% Similarity=0.176 Sum_probs=37.1
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCC--CceeecEEEEeecC--CcEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVP--GTTLGPIQIDAFLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~P--GTT~~~i~i~~~~~--~~~liDTPGi~~~ 344 (553)
..+++++|.+|||||||+|+|++.... .+..| ++|++......... ...|+||||+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~ 91 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVF--------------HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDT 91 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCS--------------CC-------CCSCEEEEEEETTEEEEEEECCSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcC--------------ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCC
Confidence 348999999999999999999975321 22333 57776543332222 3469999998643
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.21 E-value=2.6e-06 Score=90.34 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=95.3
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC-CccEEEecCCCCCccCCCccccHHHH
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS-HGHMITAVGGNGGYAGGKQFVSADEL 171 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~-~~~~~~dTaG~vgf~~~~~~~l~e~~ 171 (553)
.+.++++.++|++++|.......+ .+....|.|+ ++..+.+.... ....+.||+|..-...... .+...|
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl-------~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~-~L~~~f 229 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTL-------SPNLGVVEVSEEERFTLADIPGIIEGASEGK-GLGLEF 229 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSS-------CCEEEEEECSSSCEEEEEECCCCCCCGGGSC-CSCHHH
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc-cccCccccee-------cceeeEEEecCcceEEEEeccccccchhhhh-hhhHHH
Confidence 678999999999999998876544 3334445554 55556666543 4567888876421111100 112233
Q ss_pred HHHHHHhhhcccEEEEEcccC-CCChhh---HHHHHHHh---CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccC
Q 008807 172 REKLSHLRREKALIVKLVDIV-DFNGSF---LARIRDLA---GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLN 244 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~-d~~~s~---~~~l~~~~---~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~ 244 (553)
+.+ ++.++.+++++|+. ++...+ ..++..++ ..+|.++|+||+|+... ..+..+ .+.+.. .+
T Consensus 230 ---l~~-~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~----~~~~~l-~~~l~~--~g 298 (416)
T 1udx_A 230 ---LRH-IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE----EAVKAL-ADALAR--EG 298 (416)
T ss_dssp ---HHH-HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH----HHHHHH-HHHHHT--TT
T ss_pred ---HHH-HHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH----HHHHHH-HHHHHh--cC
Confidence 222 45789999999996 222111 22222221 25899999999998743 112221 111111 12
Q ss_pred ceeEEEeccCCccChhhhHHHHHHhh
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..++.+||+++.|+++|++.|.+.+
T Consensus 299 -~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 299 -LAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp -SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -CeEEEEECCCccCHHHHHHHHHHHH
Confidence 3689999999999999998887654
No 184
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.20 E-value=4.7e-06 Score=88.88 Aligned_cols=163 Identities=14% Similarity=0.095 Sum_probs=87.8
Q ss_pred cccccccCCCcccccCccccccCCCC-----------------CcccCCc-hh----hHhh---hccCccceEEEEEEec
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA-----------------PGYVDPD-TY----ELKK---KHHQFKTVLCGRCRLL 144 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~-----------------~GY~~~~-~f----~t~~---~~~~~rd~ic~Rc~~l 144 (553)
...++..+|...+|++++++..-.+. +|-+-.. .+ .... +.+.+-+.-...+...
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 34578899999999999987542111 1111000 00 0000 0111223333334444
Q ss_pred CCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHH---HHHHhCCCCEEEEEEcccCC
Q 008807 145 SHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLAR---IRDLAGANPIILVVTKVDLL 221 (553)
Q Consensus 145 ~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~---l~~~~~~~pvIlVlNKiDLl 221 (553)
+....++||+|.. .|.......+..+|++|+|+|+.+.......+ +....+..|+|+|+||+|+.
T Consensus 103 ~~~~~iiDtpGh~------------~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 103 KRKFIIADTPGHE------------QYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SEEEEEEECCCSG------------GGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CceEEEEECCChH------------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 5567899998852 23333334467899999999998754222211 11222345689999999997
Q ss_pred CCCCC-hhhHHHHHHHHHhhcc--cCceeEEEeccCCccChhhhHH
Q 008807 222 PKGTD-FNCVGDWVVEATTKKK--LNVLSVHLTSSKSLAGIVGVAS 264 (553)
Q Consensus 222 ~~~~~-~~~~~~~~~~~~~~~~--l~~~~vi~iSAk~g~gi~~Ll~ 264 (553)
+.+.. ...+.+.+.+.+...+ .....++.+||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 63211 1112222222222222 2225689999999999987644
No 185
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.19 E-value=8.4e-07 Score=92.29 Aligned_cols=58 Identities=28% Similarity=0.234 Sum_probs=37.7
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEE--EEee-----------------cCCc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQ--IDAF-----------------LGGG 333 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~--i~~~-----------------~~~~ 333 (553)
.++.+||.||||||||+|+|.+.. ..+++.|+||+++.. +..- ....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~--------------~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i 68 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG--------------IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTM 68 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--------------CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEE
Confidence 478999999999999999999741 235677888876321 1110 0235
Q ss_pred EEEEcCCccCC
Q 008807 334 KLYDTPGVHLH 344 (553)
Q Consensus 334 ~liDTPGi~~~ 344 (553)
.++||||+...
T Consensus 69 ~lvDtpGl~~~ 79 (363)
T 1jal_A 69 EFVDIAGLVAG 79 (363)
T ss_dssp EEEECCSCCTT
T ss_pred EEEECCCCccc
Confidence 79999998753
No 186
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.19 E-value=4.5e-07 Score=100.56 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=70.5
Q ss_pred ccccccCCCcccccCccccccCC-----------------CCCcccC---CchhhHh---hhccCccceEEEEEEecCCc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSES-----------------DAPGYVD---PDTYELK---KKHHQFKTVLCGRCRLLSHG 147 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~-----------------~~~GY~~---~~~f~t~---~~~~~~rd~ic~Rc~~l~~~ 147 (553)
..++.++|..++|+++++...-. ...|... .-..... +..+.+.+.....+...++.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~ 256 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKI 256 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeE
Confidence 34688899999999999976511 0112100 0000000 01112234444444455567
Q ss_pred cEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCC--------ChhhHHHH--HHHhCCCCEEEEEEc
Q 008807 148 HMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDF--------NGSFLARI--RDLAGANPIILVVTK 217 (553)
Q Consensus 148 ~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~--------~~s~~~~l--~~~~~~~pvIlVlNK 217 (553)
..++||+|...|..... ..+..+|++|+|||+.+. .......+ ....+..++|+|+||
T Consensus 257 i~iiDTPGh~~f~~~~~------------~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNK 324 (592)
T 3mca_A 257 YEIGDAPGHRDFISGMI------------AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNK 324 (592)
T ss_dssp --CCEEESSSEEEEECC------------C-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEEC
T ss_pred EEEEECCChHHHHHHHH------------HHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEec
Confidence 78999999766654321 123478999999999863 22222222 122233348999999
Q ss_pred ccCCCCCC-ChhhHHHHHHHHH-hhcccC--ceeEEEeccCCccChhh
Q 008807 218 VDLLPKGT-DFNCVGDWVVEAT-TKKKLN--VLSVHLTSSKSLAGIVG 261 (553)
Q Consensus 218 iDLl~~~~-~~~~~~~~~~~~~-~~~~l~--~~~vi~iSAk~g~gi~~ 261 (553)
+|+...+. ....+.+.+.+.+ ...++. ...++.+||++|.|+++
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCS
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccc
Confidence 99975321 1111222222222 112221 13689999999999974
No 187
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.18 E-value=8.2e-07 Score=97.90 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++|+|.||||||||||+|++.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHhHcCC
Confidence 47899999999999999999975
No 188
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.17 E-value=1.3e-06 Score=87.10 Aligned_cols=57 Identities=26% Similarity=0.275 Sum_probs=42.3
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|.+.. ..++.+||+|.+.........+ ..|+||||+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 62 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR--------------QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYS 62 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC--------------EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--------------cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccc
Confidence 479999999999999999998751 1356789999875443332223 46999999864
No 189
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.14 E-value=2.1e-06 Score=84.57 Aligned_cols=60 Identities=22% Similarity=0.172 Sum_probs=40.0
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCC-ceeecEEEEeecC--CcEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPG-TTLGPIQIDAFLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PG-TT~~~i~i~~~~~--~~~liDTPGi~~~ 344 (553)
..+++|+|.+|||||||+|+|++.... .++..|+ +|++......... ...|+||||+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~-------------~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~ 84 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAF-------------ESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSW 84 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCS-------------CCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-------------ccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCC
Confidence 347999999999999999999975221 2233344 6776443222222 2469999998643
No 190
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.14 E-value=2.4e-06 Score=89.14 Aligned_cols=55 Identities=25% Similarity=0.233 Sum_probs=33.6
Q ss_pred eEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 275 VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 275 v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
++++|.+|||||||+|+|.+.. ..++..|++|+|...-.+..++ ..++||||+..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~--------------~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLT--------------QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-------------------------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred EEEECCCCCCHHHHHHHHHCCC--------------ccccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 8999999999999999998752 1345678899886443322223 35899999854
No 191
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.14 E-value=9.4e-07 Score=93.25 Aligned_cols=37 Identities=30% Similarity=0.323 Sum_probs=20.6
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecE
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPI 324 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i 324 (553)
++.++|.||||||||+|+|.+.. ..+++.|+||+++.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~--------------~~~~~~p~tT~~~~ 38 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD--------------VEIANYPFTTIEAN 38 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------------------CC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--------------CcccCCCCcccCCc
Confidence 58999999999999999998751 34677899998643
No 192
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.13 E-value=2e-06 Score=79.59 Aligned_cols=57 Identities=32% Similarity=0.399 Sum_probs=40.4
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|.+.. ..++..||+|.+.........+ ..++||||...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGEN--------------VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 66 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTC--------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--------------ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCc
Confidence 479999999999999999998641 1245568888764433322223 45999999754
No 193
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.12 E-value=2.2e-06 Score=76.93 Aligned_cols=57 Identities=37% Similarity=0.388 Sum_probs=33.7
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHL 343 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~ 343 (553)
+++++|.+|||||||+|+|.+... ..++..|++|.+......... ...++||||...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRS-------------AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC------------------------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe-------------eeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 689999999999999999997521 123456788876544332222 245999999854
No 194
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.11 E-value=9.5e-06 Score=85.44 Aligned_cols=103 Identities=13% Similarity=-0.038 Sum_probs=60.2
Q ss_pred cCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCC-EEEEEEcccC
Q 008807 144 LSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANP-IILVVTKVDL 220 (553)
Q Consensus 144 l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~p-vIlVlNKiDL 220 (553)
......++||+|. ++|...+...+..+|++|+|+|+.+.......+...++ .+.| +++|+||+|+
T Consensus 64 ~~~~~~iiDtpG~------------~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 64 AARHYAHTDCPGH------------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp SSCEEEEEECSSH------------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CCeEEEEEECCCh------------HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECccc
Confidence 4456789999873 35555566667799999999999875322211111111 3567 6899999999
Q ss_pred CCCCCChhhHHHHHHHHHhhcccC--ceeEEEeccCCccC
Q 008807 221 LPKGTDFNCVGDWVVEATTKKKLN--VLSVHLTSSKSLAG 258 (553)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~l~--~~~vi~iSAk~g~g 258 (553)
.......+.+.+-+.+.+...++. ...++.+||+++.|
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 132 VQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhccc
Confidence 752111111111122222222221 24689999999765
No 195
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.11 E-value=2e-06 Score=90.33 Aligned_cols=60 Identities=25% Similarity=0.260 Sum_probs=31.6
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee-------------------cC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF-------------------LG 331 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~-------------------~~ 331 (553)
.+.++.+||.||||||||+|+|.+.. ..+++.|+||.++..-... ..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~--------------~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~ 86 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ--------------ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPA 86 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC--------------ccccCCCccccCceeEEEEECCccceeeccccCccccccc
Confidence 34589999999999999999998641 2356788888764321111 11
Q ss_pred CcEEEEcCCccCC
Q 008807 332 GGKLYDTPGVHLH 344 (553)
Q Consensus 332 ~~~liDTPGi~~~ 344 (553)
...++||||+...
T Consensus 87 ~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 87 FLNVVDIAGLVKG 99 (396)
T ss_dssp EEEEEECCC----
T ss_pred ccEEEECCCcccc
Confidence 2579999999753
No 196
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.10 E-value=1.9e-06 Score=85.97 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=35.1
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC----cEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG----GKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~----~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|+......... ..+.....|+++.+........++ ..|+||||+..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEY------PGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCC------CCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 379999999999999999998753322100 000011134444443333322222 36999999853
No 197
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.09 E-value=2.5e-06 Score=89.64 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=44.1
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-ecC------------------
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-FLG------------------ 331 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~~~------------------ 331 (553)
.+..+.++|.+|||||||+|+|.+.. ...+++.|+||+++..-.. ..+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~-------------~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~ 85 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSV-------------LGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPA 85 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHST-------------TTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-------------cccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCc
Confidence 35689999999999999999999742 1246788999987543211 111
Q ss_pred CcEEEEcCCccCC
Q 008807 332 GGKLYDTPGVHLH 344 (553)
Q Consensus 332 ~~~liDTPGi~~~ 344 (553)
...++||||+...
T Consensus 86 ~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 86 FLTVFDIAGLTKG 98 (392)
T ss_dssp EEEEECTGGGCCC
T ss_pred ceEEEeccccccC
Confidence 2479999998653
No 198
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.07 E-value=8.2e-07 Score=95.49 Aligned_cols=161 Identities=9% Similarity=-0.041 Sum_probs=88.2
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCc-----------------hhhH----h---hhccCccceEEEEEEecCC
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPD-----------------TYEL----K---KKHHQFKTVLCGRCRLLSH 146 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~-----------------~f~t----~---~~~~~~rd~ic~Rc~~l~~ 146 (553)
..++.+.|...+|++++++..-.+ .|.+... .++. . +..+.+.+.....+...+.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~-~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYK-CGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHH-HSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHH-cCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 347788899999999998765321 1111110 1110 0 1111222333334444555
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh--------hhHHHHHHH-hCCCC-EEEEEE
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG--------SFLARIRDL-AGANP-IILVVT 216 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~--------s~~~~l~~~-~~~~p-vIlVlN 216 (553)
...++||+|.. .|.......+..+|++|+|||+.+... .....+... ..+.| +|+|+|
T Consensus 86 ~~~iiDtPGh~------------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 86 QVTVIDAPGHR------------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEEECCCCT------------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred eEEEEECCCcH------------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence 67899998842 344445556779999999999986321 111111111 12444 899999
Q ss_pred cccCCCCCC-ChhhHHHHHHHHHhhcccC--ceeEEEeccCCccChhhhHH
Q 008807 217 KVDLLPKGT-DFNCVGDWVVEATTKKKLN--VLSVHLTSSKSLAGIVGVAS 264 (553)
Q Consensus 217 KiDLl~~~~-~~~~~~~~~~~~~~~~~l~--~~~vi~iSAk~g~gi~~Ll~ 264 (553)
|+|+.+.+. ....+.+.+.+.+...++. ...++.+||++|.|++++.+
T Consensus 154 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~ 204 (458)
T 1f60_A 154 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT 204 (458)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc
Confidence 999974221 1111222222222222221 14689999999999987644
No 199
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.07 E-value=1.2e-05 Score=89.02 Aligned_cols=187 Identities=11% Similarity=0.017 Sum_probs=99.4
Q ss_pred ccccccCCCcccccCccccccCCCCCcccCCc-----hhhHh---hhccCccceEEEEEEec-----CCccEEEecCCCC
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESDAPGYVDPD-----TYELK---KKHHQFKTVLCGRCRLL-----SHGHMITAVGGNG 157 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~-----~f~t~---~~~~~~rd~ic~Rc~~l-----~~~~~~~dTaG~v 157 (553)
.+.+.+++...+|+++++...-.. .|-+... ...+. +..+.+-....-.+.+. .+...++||+|..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~-tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQI-CGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHH-TTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh-cCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 456778888899999988664321 1211111 00100 00000001111223222 1346799998853
Q ss_pred CccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChh-hHHHHH-HHhCCCCEEEEEEcccCCCCCCChhhHHHHHH
Q 008807 158 GYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGS-FLARIR-DLAGANPIILVVTKVDLLPKGTDFNCVGDWVV 235 (553)
Q Consensus 158 gf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s-~~~~l~-~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~ 235 (553)
. |.......+..+|.+|+|+|+.+.... -...+. ....+.|+|+|+||+|+...+ .....+.+.
T Consensus 83 d------------F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~--~~~v~~ei~ 148 (599)
T 3cb4_D 83 D------------FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD--PERVAEEIE 148 (599)
T ss_dssp G------------GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC--HHHHHHHHH
T ss_pred H------------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc--HHHHHHHHH
Confidence 2 333344556688999999999875321 111121 122478999999999997543 222222221
Q ss_pred HHHhhcccCceeEEEeccCCccChhhhHHHHHHhhcc--------cceEEecc---CCCChhHHHHHHHhh
Q 008807 236 EATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKG--------RDVYILGS---ANVGKSAFINALLKK 295 (553)
Q Consensus 236 ~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g--------~~v~ivG~---~NVGKSTLIN~L~~~ 295 (553)
+. .++...+++.+||++|.|+++|++.|.+..+. ...++... +++|+.++++-+-+.
T Consensus 149 ~~---lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 149 DI---VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp HH---TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred HH---hCCCcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCE
Confidence 11 12332358999999999999999998876431 13344444 778887777665554
No 200
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.06 E-value=1.7e-06 Score=81.79 Aligned_cols=60 Identities=30% Similarity=0.397 Sum_probs=35.6
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
++..++++|.+|||||||+|+|.+... ...+++.+|+|+..-.+. ..++..++||||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~------------~~~~~~~~G~~~~~~~~~-~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS------------LARTSKTPGRTQLINLFE-VADGKRLVDLPGYGY 84 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------------------CCEEEEE-EETTEEEEECCCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc------------cccccCCCccceeeEEEE-ecCCEEEEECcCCcc
Confidence 456899999999999999999986421 122466789987432232 334677999999853
No 201
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.05 E-value=3.8e-05 Score=72.32 Aligned_cols=165 Identities=18% Similarity=0.103 Sum_probs=89.9
Q ss_pred cccccCCCcccccCccccccCCCC-CcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHHH
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA-PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSADE 170 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~-~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~ 170 (553)
..+..+|..++|++++++...... ..-+.+.... ...++.+...+ ...++||+|.... ..+....+.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~---------~~~~~~~~~~~-~~~l~Dt~G~~~~--~~~~~~~~~ 94 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGR---------TQLINLFEVAD-GKRLVDLPGYGYA--EVPEEMKRK 94 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC----------------------CCEEEEEEET-TEEEEECCCCC--------CCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCcc---------ceeeEEEEecC-CEEEEECcCCccc--ccCHHHHHH
Confidence 368889999999999998765432 0101111000 11233333333 5678999875311 011112234
Q ss_pred HHHHHHHhh---hcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCc
Q 008807 171 LREKLSHLR---REKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNV 245 (553)
Q Consensus 171 ~~~~l~~~~---~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~ 245 (553)
++..+.... ..++.+++++|+.+........+..++ .+.|+++|.||+|+++... ...........+..... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~-~~~~~~~~~~~~~~~~~-~ 172 (210)
T 1pui_A 95 WQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA-RKAQLNMVREAVLAFNG-D 172 (210)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH-HHHHHHHHHHHHGGGCS-C
T ss_pred HHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh-HHHHHHHHHHHHHhcCC-C
Confidence 544444433 467889999999875433222232222 3678999999999875421 11101111111111111 2
Q ss_pred eeEEEeccCCccChhhhHHHHHHhh
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
...+.+||+++.|++++++.|.+..
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CceEEEeecCCCCHHHHHHHHHHHH
Confidence 4578899999999999998887654
No 202
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.04 E-value=3.8e-06 Score=84.19 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=21.7
Q ss_pred cceEEeccCCCChhHHHHHHHhhh
Q 008807 273 RDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
.+++++|.+|||||||+|+|++..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999763
No 203
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.03 E-value=1.4e-05 Score=88.48 Aligned_cols=109 Identities=18% Similarity=0.104 Sum_probs=69.0
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhh-HHHHH-HHhCCCCEEEEEEcccCCCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSF-LARIR-DLAGANPIILVVTKVDLLPK 223 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~-~~~l~-~~~~~~pvIlVlNKiDLl~~ 223 (553)
+...++||+|... |.......+..+|.+|+|||+.+..... ...+. ....+.|+|+|+||+|+...
T Consensus 73 ~~inliDTPGh~d------------F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 73 YKLHLIDTPGHVD------------FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp EEEEEECCCCSGG------------GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred EEEEEEECCCcHh------------HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc
Confidence 3456899988642 2333444466889999999998754221 11111 11247899999999999754
Q ss_pred CCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 224 GTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
+ .....+-+.+ ..++...+++.+||++|.|+++|++.|.+..+
T Consensus 141 ~--~~~v~~el~~---~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 141 D--VDRVKKQIEE---VLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp C--HHHHHHHHHH---TSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred C--HHHHHHHHHH---hhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 3 2222111111 11233235899999999999999999877543
No 204
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.02 E-value=4e-06 Score=80.83 Aligned_cols=57 Identities=25% Similarity=0.209 Sum_probs=35.6
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|++.. ..+++.+++|++...-..... ...|+||||...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN--------------VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC--------------EEEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--------------CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 479999999999999999998641 113456888886432221112 246999999853
No 205
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.02 E-value=1.4e-05 Score=82.86 Aligned_cols=129 Identities=17% Similarity=0.134 Sum_probs=73.0
Q ss_pred EEEEEEec-CCccEEEecCCCCCccC-CCccccHHHHHHHHHHhh-hcccEEEEEcccCCCC-hhhHHHHHHHh--CCCC
Q 008807 137 LCGRCRLL-SHGHMITAVGGNGGYAG-GKQFVSADELREKLSHLR-REKALIVKLVDIVDFN-GSFLARIRDLA--GANP 210 (553)
Q Consensus 137 ic~Rc~~l-~~~~~~~dTaG~vgf~~-~~~~~l~e~~~~~l~~~~-~~adlIl~VVD~~d~~-~s~~~~l~~~~--~~~p 210 (553)
++-+++.. ..+..++||+|...-.. +.+....+.+.+.+...+ ..+++|++|+|+.... ..-...+...+ .+.|
T Consensus 120 ~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~ 199 (353)
T 2x2e_A 120 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQR 199 (353)
T ss_dssp EEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTT
T ss_pred eEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCc
Confidence 33344433 35688999988532110 112223446666665555 4556777788876422 21111222222 3579
Q ss_pred EEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 211 IILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 211 vIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
+++|+||+|++++.... .+++.........+...++.+||+++.|+++|++.+.+
T Consensus 200 ~i~V~NK~Dl~~~~~~~---~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 200 TIGVITKLDLMDEGTDA---RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp EEEEEECGGGSCTTCCC---HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred eEEEeccccccCcchhH---HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 99999999998654321 12221000011123346788999999999999988865
No 206
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.00 E-value=2.7e-05 Score=77.94 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=70.7
Q ss_pred CccEEEecCCCCCccC-CCccccHHHHHHHHHHhhhcccE-EEEEcccCCCChhh-HHHHHHHh--CCCCEEEEEEcccC
Q 008807 146 HGHMITAVGGNGGYAG-GKQFVSADELREKLSHLRREKAL-IVKLVDIVDFNGSF-LARIRDLA--GANPIILVVTKVDL 220 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~-~~~~~l~e~~~~~l~~~~~~adl-Il~VVD~~d~~~s~-~~~l~~~~--~~~pvIlVlNKiDL 220 (553)
....++||+|...-.. +.+....+.+...+..++..++. |++|+|+.+..... ...+...+ .+.|+++|+||+|+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 204 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcccc
Confidence 5688999987531100 01222234666666666666664 45899997643211 11232222 35799999999999
Q ss_pred CCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 221 LPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
.+..... .+++.........+...++.+||+++.|+++|++.|.+.
T Consensus 205 ~~~~~~~---~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 205 MDEGTDA---RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp SCTTCCC---HHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CCCCchH---HHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 8654321 122211000011123467889999999999999888753
No 207
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.97 E-value=3e-05 Score=87.54 Aligned_cols=116 Identities=10% Similarity=0.001 Sum_probs=69.5
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh-hhHHHHHHHhC--CCCEEEEEEcccCCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG-SFLARIRDLAG--ANPIILVVTKVDLLP 222 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-s~~~~l~~~~~--~~pvIlVlNKiDLl~ 222 (553)
.+..++||||... ...........+.++|+||+|+|+.+... .-...+...+. +.|+++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~---------~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLND---------TEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHH---------HHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCc---------hhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccc
Confidence 4678999988531 11123344455678999999999976532 22222332222 578999999999975
Q ss_pred CC----CChhh-------HHHHHHHHHhhc-c-----cCceeEEEeccC--------------CccChhhhHHHHHHhh
Q 008807 223 KG----TDFNC-------VGDWVVEATTKK-K-----LNVLSVHLTSSK--------------SLAGIVGVASEIQKEK 270 (553)
Q Consensus 223 ~~----~~~~~-------~~~~~~~~~~~~-~-----l~~~~vi~iSAk--------------~g~gi~~Ll~~L~~~~ 270 (553)
.. ..... +.+.+...+... + .....++.+||+ ++.|+++|.+.|.+.+
T Consensus 245 ~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 245 ESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp GGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 42 11001 212111111111 1 112368999999 9999999998887644
No 208
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.97 E-value=6.2e-06 Score=85.42 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=21.6
Q ss_pred cceEEeccCCCChhHHHHHHHhhh
Q 008807 273 RDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
..++|+|.+|||||||||+|.+..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999753
No 209
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.97 E-value=9.3e-06 Score=91.66 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.6
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+.+++|+|.+|||||||||+|++.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999999975
No 210
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.97 E-value=1.7e-06 Score=94.55 Aligned_cols=151 Identities=12% Similarity=0.057 Sum_probs=87.4
Q ss_pred ccccccCCCcccccCccccccCC------CCCcccCCchhhHhhhccCccceEEEEEEe-cCCccEEEecCCCCCccCCC
Q 008807 91 VLKVNSAVASCYGCGAPLQTSES------DAPGYVDPDTYELKKKHHQFKTVLCGRCRL-LSHGHMITAVGGNGGYAGGK 163 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~------~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~-l~~~~~~~dTaG~vgf~~~~ 163 (553)
...+...|..++|++++|+.... ..+|-+.. .....+.. .+....++||+|...|....
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~--------------i~~~~v~~~~g~~i~~iDTPGhe~f~~~~ 69 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQH--------------IGAFLVSLPSGEKITFLDTPGHAAFSAMR 69 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCC--------------TTSCCBCSSCSSCCBCEECSSSCCTTTSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEE--------------EeEEEEEeCCCCEEEEEECCChHHHHHHH
Confidence 45678888899999998875431 11222211 10011111 22357789999865444322
Q ss_pred ccccHHHHHHHHHHhhhcccEEEEEcccCCCChh-hHHHHHHHh-CCCCEEEEEEcccCCCCCCChhhHHHHHHHH-Hhh
Q 008807 164 QFVSADELREKLSHLRREKALIVKLVDIVDFNGS-FLARIRDLA-GANPIILVVTKVDLLPKGTDFNCVGDWVVEA-TTK 240 (553)
Q Consensus 164 ~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s-~~~~l~~~~-~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~-~~~ 240 (553)
......+|++|+|+|+.+.... ....+..+. .+.|+++|+||+|+...... .+...+... ...
T Consensus 70 ------------~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~--~v~~~l~~~~~~~ 135 (537)
T 3izy_P 70 ------------ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE--KVKKELLAYDVVC 135 (537)
T ss_dssp ------------BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC--SSSSHHHHTTSCC
T ss_pred ------------HHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH--HHHHHHHhhhhhH
Confidence 1234578999999999885432 222222221 46899999999999754321 111111110 000
Q ss_pred ccc-CceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKL-NVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l-~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
..+ ....++.+||++|.|+++|++.|...
T Consensus 136 e~~~~~~~iv~vSAktG~GI~eLle~I~~l 165 (537)
T 3izy_P 136 EDYGGDVQAVHVSALTGENMMALAEATIAL 165 (537)
T ss_dssp CCSSSSEEECCCCSSSSCSSHHHHHHHHHH
T ss_pred HhcCCCceEEEEECCCCCCchhHHHHHHHh
Confidence 111 12468899999999999999988654
No 211
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.94 E-value=8.8e-06 Score=73.45 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=39.2
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeec--CCcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFL--GGGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~--~~~~liDTPGi~ 342 (553)
.+++++|.+|||||||+|+|.+.... ....+.+|++.....+.... ....++||||..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFD------------PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC------------TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCC------------CCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 47999999999999999999875211 12345667776443443211 123599999973
No 212
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.93 E-value=8.8e-06 Score=82.28 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.8
Q ss_pred ceEEeccCCCChhHHHHHHHhhhC
Q 008807 274 DVYILGSANVGKSAFINALLKKMG 297 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~ 297 (553)
.++|+|.+|||||||||+|++...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 799999999999999999998643
No 213
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.91 E-value=3.3e-06 Score=87.26 Aligned_cols=55 Identities=27% Similarity=0.245 Sum_probs=39.7
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEE-Eeec--CCcEEEEcCCcc
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQI-DAFL--GGGKLYDTPGVH 342 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i-~~~~--~~~~liDTPGi~ 342 (553)
+|.++|.+|||||||||+|... ++.++.+|.||+++.-- ..+. ....|+||||+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~--------------~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i 217 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA--------------KPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 217 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE--------------CCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcC--------------CCccccCCccccCceEEEEEeCCCceEEEecCCCCc
Confidence 6899999999999999999863 23456788888864321 1122 235699999975
No 214
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.91 E-value=4.1e-06 Score=75.62 Aligned_cols=56 Identities=25% Similarity=0.209 Sum_probs=31.0
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|.+.. ...+++.+|+|.. ..+. ... ...++||||...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~-------------~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVE-------------DGPEAEAAGHTYD-RSIV-VDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-----------------------CEEE-EEEE-ETTEEEEEEEEECC----
T ss_pred EEEEEECCCCCCHHHHHHHHcCcc-------------ccCCCCccccceE-EEEE-ECCEEEEEEEEECCCCcc
Confidence 378999999999999999998542 1124566788874 2222 222 135899999643
No 215
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.91 E-value=6.8e-06 Score=74.71 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=34.5
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~ 342 (553)
.+++++|.+|||||||+|+|.+... ...++.+|+|.....+. +.+ ...++||||..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~g~~ 63 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQE-------------RDLHEQLGEDVYERTLT-VDGEDTTLVVVDTWEAE 63 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC------------------CCCSSSSEEEEEEE-ETTEEEEEEEECCC---
T ss_pred EEEEEECCCCccHHHHHHHHhcCCC-------------ccccCccccceeEEEEE-ECCEEEEEEEEecCCCC
Confidence 4799999999999999999986421 12344577765333333 222 23589999974
No 216
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.90 E-value=1.1e-05 Score=73.51 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 217
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.89 E-value=9.7e-06 Score=84.56 Aligned_cols=35 Identities=37% Similarity=0.501 Sum_probs=27.8
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceee
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLG 322 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~ 322 (553)
++.+||.||||||||+|+|.+.. +.++.+|+||.+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~--------------~~v~~~p~~Ti~ 37 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN--------------ALAANYPFATID 37 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH--------------TTCSSCCGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--------------CcccCCCCceec
Confidence 68999999999999999998752 124567777765
No 218
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.89 E-value=1.8e-05 Score=84.31 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=66.6
Q ss_pred EEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC-------hhhHHHHH---HHhCCC
Q 008807 140 RCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN-------GSFLARIR---DLAGAN 209 (553)
Q Consensus 140 Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-------~s~~~~l~---~~~~~~ 209 (553)
.+........++||+|.. .|.......+..+|.+|+|+|+.+.. .....+.. ...+..
T Consensus 78 ~~~~~~~~~~iiDtpG~~------------~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~ 145 (435)
T 1jny_A 78 RFETKKYFFTIIDAPGHR------------DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLD 145 (435)
T ss_dssp EEECSSCEEEECCCSSST------------THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCT
T ss_pred EEecCCeEEEEEECCCcH------------HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCC
Confidence 444555677899998753 23334445567999999999999731 11111111 112335
Q ss_pred CEEEEEEcccCCCCCCCh---hhHHHHHHHHHhhcccC--ceeEEEeccCCccChhhhHH
Q 008807 210 PIILVVTKVDLLPKGTDF---NCVGDWVVEATTKKKLN--VLSVHLTSSKSLAGIVGVAS 264 (553)
Q Consensus 210 pvIlVlNKiDLl~~~~~~---~~~~~~~~~~~~~~~l~--~~~vi~iSAk~g~gi~~Ll~ 264 (553)
++|+|+||+|+.+.+... ..+.+.+.+.+...++. ...++.+||++|.|+.++.+
T Consensus 146 ~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 146 QLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred eEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 689999999998642111 11222222222222222 14689999999999987643
No 219
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.89 E-value=1.8e-05 Score=72.86 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=35.2
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC----cEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG----GKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~----~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|.+... ....++|+.+........++ ..++||||...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF---------------VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC---------------CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC---------------CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 4799999999999999999986421 22334455443322222222 24799999643
No 220
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.87 E-value=9.8e-06 Score=73.95 Aligned_cols=57 Identities=23% Similarity=0.234 Sum_probs=36.8
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecE--EEEeecCCcEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPI--QIDAFLGGGKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i--~i~~~~~~~~liDTPGi~ 342 (553)
..+++++|.+|||||||+|+|.+... ..+..|++|.+.. .+........++||||..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 66 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKV--------------TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHE 66 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCS--------------SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc--------------ccCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence 45799999999999999999987521 1233455554421 222111224589999964
No 221
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.84 E-value=1.8e-05 Score=85.09 Aligned_cols=111 Identities=8% Similarity=-0.050 Sum_probs=60.4
Q ss_pred EEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC--------hhhHHHHHHH-hCCCC-
Q 008807 141 CRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN--------GSFLARIRDL-AGANP- 210 (553)
Q Consensus 141 c~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~--------~s~~~~l~~~-~~~~p- 210 (553)
+...+....++||+|.. .|..........+|++|+|||+.+.. ......+... ..+.|
T Consensus 116 ~~~~~~~~~iiDtPGh~------------~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~ 183 (467)
T 1r5b_A 116 FETEHRRFSLLDAPGHK------------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINH 183 (467)
T ss_dssp EECSSEEEEECCCCC-----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSS
T ss_pred EecCCeEEEEEECCCcH------------HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCE
Confidence 33444567889998853 33333344457899999999998742 1222222211 13556
Q ss_pred EEEEEEcccCCCCCCChhh---HHHHHHHHHhhc-ccC---ceeEEEeccCCccChhhhH
Q 008807 211 IILVVTKVDLLPKGTDFNC---VGDWVVEATTKK-KLN---VLSVHLTSSKSLAGIVGVA 263 (553)
Q Consensus 211 vIlVlNKiDLl~~~~~~~~---~~~~~~~~~~~~-~l~---~~~vi~iSAk~g~gi~~Ll 263 (553)
+|+|+||+|+...+...+. +.+-+.+.+... ++. ...++.+||++|.|+++++
T Consensus 184 iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 184 LVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 8999999999653322211 111121222112 222 2458899999999998765
No 222
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.84 E-value=1.2e-05 Score=81.53 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=40.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee-cCC--cEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF-LGG--GKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~-~~~--~~liDTPGi~ 342 (553)
..+++++|.+|||||||+|+|++.. ...++..+|+|.+....... .++ ..|+||||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~-------------~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY-------------SAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC-------------CTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-------------CCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 3579999999999999999998641 12345568888874333221 122 3599999974
No 223
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.84 E-value=2.2e-05 Score=72.81 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999964
No 224
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.83 E-value=1.1e-05 Score=83.55 Aligned_cols=110 Identities=14% Similarity=-0.005 Sum_probs=65.0
Q ss_pred cCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCC
Q 008807 144 LSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPK 223 (553)
Q Consensus 144 l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~ 223 (553)
.+....++||+|.. ... ..+...+|++++|+|....+.. ..+...+...|.++|+||+|+.+.
T Consensus 170 ~~~~~iiiDTpGi~--------~~~-------~~~~~~aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 170 AGFDVILIETVGVG--------QSE-------VAVANMVDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHH 232 (355)
T ss_dssp TTCCEEEEEECSCS--------SHH-------HHHHTTCSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGH
T ss_pred CCCCEEEEeCCCCC--------cHH-------HHHHHhCCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcCh
Confidence 45678899998742 111 1224689999999997643321 111111123588999999998643
Q ss_pred CCChhhHHHHHHHHHhhcc---cC-ceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 224 GTDFNCVGDWVVEATTKKK---LN-VLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~---l~-~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
.. .....+.+.+.+.... .+ ...++.+||++|.|+++|++.|.+.+.
T Consensus 233 ~~-~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 233 KE-ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HH-HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 21 1111111211111110 01 146899999999999999999877543
No 225
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.82 E-value=2e-05 Score=82.04 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=69.7
Q ss_pred EEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC---------hhhHH---HHHHHh
Q 008807 139 GRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN---------GSFLA---RIRDLA 206 (553)
Q Consensus 139 ~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~---------~s~~~---~l~~~~ 206 (553)
...........++||+|- +.++.......++++.||+|+|+++++ .++.. .+..+.
T Consensus 194 ~~~~~~~~~l~i~Dt~Gq------------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~ 261 (362)
T 1zcb_A 194 YDFEIKNVPFKMVDVGGQ------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV 261 (362)
T ss_dssp EEEEETTEEEEEEEECC-------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHH
T ss_pred EEeeeCCeEEEEEeccch------------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHh
Confidence 344444556789999874 334444444567899999999999853 12221 122222
Q ss_pred -----CCCCEEEEEEcccCCCCC-----------------CChhhHHHHHHHHHhhc-c---cCceeEEEeccCCccChh
Q 008807 207 -----GANPIILVVTKVDLLPKG-----------------TDFNCVGDWVVEATTKK-K---LNVLSVHLTSSKSLAGIV 260 (553)
Q Consensus 207 -----~~~pvIlVlNKiDLl~~~-----------------~~~~~~~~~~~~~~~~~-~---l~~~~vi~iSAk~g~gi~ 260 (553)
.+.|+|||+||+||..+. .......+|+...+... . -....++.+||+++.|++
T Consensus 262 ~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~ 341 (362)
T 1zcb_A 262 NNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIR 341 (362)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHH
T ss_pred cchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHH
Confidence 357999999999986211 22334445543332211 1 111357889999999999
Q ss_pred hhHHHHHH
Q 008807 261 GVASEIQK 268 (553)
Q Consensus 261 ~Ll~~L~~ 268 (553)
++++.+.+
T Consensus 342 ~vF~~v~~ 349 (362)
T 1zcb_A 342 LVFRDVKD 349 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887765
No 226
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.82 E-value=1.7e-05 Score=73.61 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=32.8
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|.+..... ...+..|++|.+. ......++||||...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~-----------~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~ 103 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRP-----------TVVSQEPLSAADY-----DGSGVTLVDFPGHVK 103 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC-----------------------CC-----CCTTCSEEEETTCCB
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-----------ccccCCCceeeee-----cCCeEEEEECCCCch
Confidence 489999999999999999999753211 1223445566532 223567999999743
No 227
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.81 E-value=4.7e-05 Score=85.85 Aligned_cols=123 Identities=12% Similarity=0.012 Sum_probs=68.5
Q ss_pred ccccccccCCCcccccCccccccCCC-----CCcccCCch----hhHh-hhccCccceEEEEEEecCCccEEEecCCCCC
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESD-----APGYVDPDT----YELK-KKHHQFKTVLCGRCRLLSHGHMITAVGGNGG 158 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~-----~~GY~~~~~----f~t~-~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vg 158 (553)
.+...+.+++...+|+++++...-.. ..|-+..+. +... +....+-...+..+.+.++...++||+|...
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 34557888899999999998765310 011111100 0000 0001111223345556667788999988632
Q ss_pred ccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHH--hCCCCEEEEEEcccCCCC
Q 008807 159 YAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDL--AGANPIILVVTKVDLLPK 223 (553)
Q Consensus 159 f~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~--~~~~pvIlVlNKiDLl~~ 223 (553)
|.......+..+|.+|+|+|+.+........+... ..+.|+++|+||+|+...
T Consensus 90 ------------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 ------------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred ------------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 23334445668999999999987543222221111 147899999999999754
No 228
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.81 E-value=1.3e-05 Score=72.41 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999974
No 229
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.81 E-value=2.6e-05 Score=70.87 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|++.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 230
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.81 E-value=4.4e-05 Score=86.14 Aligned_cols=122 Identities=14% Similarity=0.022 Sum_probs=68.3
Q ss_pred cccccccCCCcccccCccccccCCC-----CCcccCCch----hhHh-hhccCccceEEEEEEecCCccEEEecCCCCCc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESD-----APGYVDPDT----YELK-KKHHQFKTVLCGRCRLLSHGHMITAVGGNGGY 159 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~-----~~GY~~~~~----f~t~-~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf 159 (553)
+...+.+++..++|+++++...-.. ..|-+.++. +... ++...+....+..+.+.++...++||+|...|
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 3457888899999999998765310 011111110 0000 00111112334456666677889999986533
Q ss_pred cCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCC
Q 008807 160 AGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPK 223 (553)
Q Consensus 160 ~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~ 223 (553)
. .....++..+|.+|+|+|+.+........+...+ .+.|+++|+||+|+...
T Consensus 89 ~------------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 89 T------------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp C------------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred H------------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 2 1223345679999999999874322221211111 47899999999999764
No 231
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.80 E-value=6.1e-05 Score=88.17 Aligned_cols=166 Identities=11% Similarity=-0.019 Sum_probs=88.0
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHh------hhccCccceEEEEEEecCCccEEEecCCCCCccC
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELK------KKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAG 161 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~------~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~ 161 (553)
...++.++|...+|++++++...... .|-.....|+.. +..+.+-+.....+...+....++||+|.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH----- 369 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH----- 369 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCH-----
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh-----
Confidence 34578889999999999987653210 010000001000 00000011111122233456789999873
Q ss_pred CCccccHHHHHHHHHHhhhcccEEEEEcccCCCChh----hHHHHHHHhCCCC-EEEEEEcccCCCCCCChhhHHHHHHH
Q 008807 162 GKQFVSADELREKLSHLRREKALIVKLVDIVDFNGS----FLARIRDLAGANP-IILVVTKVDLLPKGTDFNCVGDWVVE 236 (553)
Q Consensus 162 ~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s----~~~~l~~~~~~~p-vIlVlNKiDLl~~~~~~~~~~~~~~~ 236 (553)
+.|..........+|++|+|||+.+.... .+..+.. .+.| +|+|+||+|+.......+.+.+-+.+
T Consensus 370 -------edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~e 440 (1289)
T 3avx_A 370 -------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRE 440 (1289)
T ss_dssp -------HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence 45655566667799999999999874321 2222221 2567 78999999997522111111111212
Q ss_pred HHhhcccC--ceeEEEeccCCc--------cChhhhHHHHHHh
Q 008807 237 ATTKKKLN--VLSVHLTSSKSL--------AGIVGVASEIQKE 269 (553)
Q Consensus 237 ~~~~~~l~--~~~vi~iSAk~g--------~gi~~Ll~~L~~~ 269 (553)
.+...++. ...++.+||++| .|+++|++.|.+.
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 22222221 246899999999 3577777777653
No 232
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.80 E-value=2.7e-05 Score=71.11 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999999875
No 233
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.80 E-value=2e-05 Score=71.13 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 37899999999999999999965
No 234
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.79 E-value=6.4e-06 Score=85.35 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.5
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..+.++|.||||||||+|+|.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999974
No 235
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.79 E-value=2.2e-05 Score=70.71 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=36.6
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~ 342 (553)
.+++++|.+|||||||+|+|.+.... ....+..|++.....+.. .. ...++||||..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFA------------ENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC------------TTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC------------CCCCCccceeEEEEEEEE-CCEEEEEEEEECCCCh
Confidence 47999999999999999999875211 112334455543333332 22 24599999953
No 236
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.79 E-value=2.1e-05 Score=73.29 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=40.1
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~ 342 (553)
..+++++|.+|||||||+|+|.+... ....++.+|+|.....+..... ...|+||||..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHF------------DHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCC------------CTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC------------CCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 45899999999999999999987521 1124556777765444432111 23599999953
No 237
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.78 E-value=3.5e-06 Score=88.88 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=31.1
Q ss_pred CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHH
Q 008807 208 ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVAS 264 (553)
Q Consensus 208 ~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~ 264 (553)
.+|+++|+||+|+. .. ..+..+ .+.+.. .+ ..++.+||+.+.|+.+|++
T Consensus 214 ~kP~i~v~NK~D~~-~~---~~l~~l-~~~~~~--~~-~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAA-SD---EQIKRL-VREEEK--RG-YIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGS-CH---HHHHHH-HHHHHH--TT-CEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCcccc-ch---HHHHHH-HHHHhh--cC-CcEEEEeccchhhHHHHHh
Confidence 48999999999986 21 112221 111111 12 4689999999999887644
No 238
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.78 E-value=0.00014 Score=80.58 Aligned_cols=110 Identities=14% Similarity=0.074 Sum_probs=66.2
Q ss_pred cEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh-hhHHHHHHH-hCCCCEEEEEEcccCCCCCC
Q 008807 148 HMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG-SFLARIRDL-AGANPIILVVTKVDLLPKGT 225 (553)
Q Consensus 148 ~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-s~~~~l~~~-~~~~pvIlVlNKiDLl~~~~ 225 (553)
..++||+|...|..... .....+|.+|+|+|+.+... .-...+..+ ..+.|+++|+||+|+.+...
T Consensus 72 i~liDTPGhe~F~~~~~------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~ 139 (594)
T 1g7s_A 72 LFFIDTPGHEAFTTLRK------------RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWR 139 (594)
T ss_dssp EEEECCCTTSCCTTSBC------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCC
T ss_pred EEEEECCCcHHHHHHHH------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccc
Confidence 67999999765543211 22457899999999998321 111111111 14689999999999975321
Q ss_pred C-------------hhhHHHHH-------HHHHhhccc------------CceeEEEeccCCccChhhhHHHHHHh
Q 008807 226 D-------------FNCVGDWV-------VEATTKKKL------------NVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 226 ~-------------~~~~~~~~-------~~~~~~~~l------------~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
. ...+.+.+ .+.+...++ ....++.+||++|.|+++|++.|...
T Consensus 140 ~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 140 VHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp CCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 1 01111111 111111111 22468999999999999999888654
No 239
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.78 E-value=3.5e-05 Score=68.97 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999965
No 240
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.78 E-value=1.6e-05 Score=87.27 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.3
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++|+|.+|||||||||+|++.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999975
No 241
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.78 E-value=2.6e-05 Score=73.46 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=21.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 348999999999999999999964
No 242
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.77 E-value=2e-05 Score=71.29 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
No 243
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.77 E-value=1.7e-05 Score=75.30 Aligned_cols=147 Identities=14% Similarity=0.063 Sum_probs=71.9
Q ss_pred ccccccccCCCcccccCccccccCCCCCc-ccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCcccc
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPG-YVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~G-Y~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l 167 (553)
.+..++..+|...+|++++++........ ..... .+..... .......++||+|...|
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~------------~~~~~~~-~~~~~~~l~Dt~G~~~~-------- 68 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ------------EPLSAAD-YDGSGVTLVDFPGHVKL-------- 68 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCS------------SCEEETT-GGGSSCEEEECCCCGGG--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeec------------CceEEEE-eeCceEEEEECCCcHHH--------
Confidence 34557889999999999999865432211 00000 1111111 13356789999886321
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccC-CCC--hhhHHHHHHHh--------CCCCEEEEEEcccCCCCCCChhhHHHHHHH
Q 008807 168 ADELREKLSHLRREKALIVKLVDIV-DFN--GSFLARIRDLA--------GANPIILVVTKVDLLPKGTDFNCVGDWVVE 236 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~-d~~--~s~~~~l~~~~--------~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~ 236 (553)
...+...+......+|.+|+|+|+. +.. ......+..+. .+.|+++|+||+|+..... ...+.+.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~l~~ 147 (218)
T 1nrj_B 69 RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP-PSKIKDALES 147 (218)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC-HHHHHHHHHH
Confidence 1222222333333489999999998 432 22222222221 3689999999999986543 2222222211
Q ss_pred HHhh--cccCceeEEEeccCCccC
Q 008807 237 ATTK--KKLNVLSVHLTSSKSLAG 258 (553)
Q Consensus 237 ~~~~--~~l~~~~vi~iSAk~g~g 258 (553)
.... ...+ ..++.+||+++.+
T Consensus 148 ~~~~~~~~~~-~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 148 EIQKVIERRK-KSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHH-HHHHC--------
T ss_pred HHHHHHHHHh-ccccccccccccc
Confidence 1110 0111 2456789888764
No 244
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.76 E-value=3.9e-05 Score=68.75 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999975
No 245
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.76 E-value=1.6e-05 Score=82.45 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=72.7
Q ss_pred EEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC---------hhhH---HHHHHHh
Q 008807 139 GRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN---------GSFL---ARIRDLA 206 (553)
Q Consensus 139 ~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~---------~s~~---~~l~~~~ 206 (553)
...........++||+|-.. ++..-....++++.||+|+|+++++ .++. ..+..+.
T Consensus 186 ~~~~~~~~~l~iwDt~GQe~------------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 186 THFTFKDLHFKMFDVGGQRS------------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp EEEEETTEEEEEEEECCSGG------------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred EEEeeCCeeEEEEeCCCchh------------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 34444445678999988532 2333334567899999999999853 1221 1222222
Q ss_pred -----CCCCEEEEEEcccCCCCC----------------CChhhHHHHHHHHHhhcc----cCceeEEEeccCCccChhh
Q 008807 207 -----GANPIILVVTKVDLLPKG----------------TDFNCVGDWVVEATTKKK----LNVLSVHLTSSKSLAGIVG 261 (553)
Q Consensus 207 -----~~~pvIlVlNKiDLl~~~----------------~~~~~~~~~~~~~~~~~~----l~~~~vi~iSAk~g~gi~~ 261 (553)
.+.|+|||+||+||.... ...+...+|+...+.... -....++.+||+++.|+++
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 357999999999985211 223444455433222110 1124578899999999999
Q ss_pred hHHHHHHh
Q 008807 262 VASEIQKE 269 (553)
Q Consensus 262 Ll~~L~~~ 269 (553)
+++.+.+.
T Consensus 334 vF~~v~~~ 341 (353)
T 1cip_A 334 VFDAVTDV 341 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887653
No 246
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.76 E-value=2.3e-05 Score=73.21 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=36.5
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
..+++++|.+|||||||+|+|.+.... ..++..|.+...+.+. .....++||||...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~-------------~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-------------TLQPTWHPTSEELAIG--NIKFTTFDLGGHIQ 79 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC-------------CCCCCCSCEEEEEEET--TEEEEEEECCCSGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-------------ccccCCCCCeEEEEEC--CEEEEEEECCCCHH
Confidence 458999999999999999999874211 1233445554322221 11246999999743
No 247
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.76 E-value=5.4e-06 Score=89.82 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=85.1
Q ss_pred cccccccCCCcccccCccccccCC------CCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCC
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSES------DAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGK 163 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~------~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~ 163 (553)
+...+...|...+|+++++..... +.+|.+.. .....+...+....++||+|...|....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~--------------i~~~~v~~~~~~i~~iDTPGhe~f~~~~ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQH--------------IGAYHVETENGMITFLDTPGHAAFTSMR 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCC--------------SSCCCCCTTSSCCCEECCCTTTCCTTSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEe--------------EEEEEEEECCEEEEEEECCCcHHHHHHH
Confidence 345677788888999888865421 11122211 1011122234467899999876554332
Q ss_pred ccccHHHHHHHHHHhhhcccEEEEEcccCCCC-hhhHHHHHHH-hCCCCEEEEEEcccCCCCCCChhhHHHHHHH-HHhh
Q 008807 164 QFVSADELREKLSHLRREKALIVKLVDIVDFN-GSFLARIRDL-AGANPIILVVTKVDLLPKGTDFNCVGDWVVE-ATTK 240 (553)
Q Consensus 164 ~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~-~s~~~~l~~~-~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~-~~~~ 240 (553)
......+|++++|+|+.+.. ......+... ..+.|+|+|+||+|+...+.. .+...+.+ ....
T Consensus 69 ------------~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~--~v~~~l~~~~~~~ 134 (501)
T 1zo1_I 69 ------------ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPD--RVKNELSQYGILP 134 (501)
T ss_dssp ------------CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCC--CTTCCCCCCCCCT
T ss_pred ------------HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHH--HHHHHHHHhhhhH
Confidence 12245789999999998732 1112222211 246899999999999653211 11000000 0000
Q ss_pred ccc-CceeEEEeccCCccChhhhHHHHHH
Q 008807 241 KKL-NVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 241 ~~l-~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..+ +...++.+||++|.|+++|++.|..
T Consensus 135 ~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 135 EEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 111 1246899999999999999988753
No 248
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.76 E-value=3.3e-05 Score=70.27 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999865
No 249
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.76 E-value=5.3e-06 Score=76.85 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=36.7
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~ 342 (553)
.+++++|.+|||||||+|+|.+... ...++.+|++...+.+. .....++||||..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~-------------~~~~~t~g~~~~~~~~~--~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDI-------------SHITPTQGFNIKSVQSQ--GFKLNVWDIGGQR 71 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCC-------------EEEEEETTEEEEEEEET--TEEEEEEECSSCG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-------------CcccCcCCeEEEEEEEC--CEEEEEEECCCCH
Confidence 4899999999999999999986421 11234456655433322 1234689999963
No 250
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.75 E-value=3.9e-05 Score=70.95 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999964
No 251
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.75 E-value=2.7e-05 Score=70.06 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=36.5
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~ 342 (553)
.+++++|.+|||||||+|+|.+..... ...+..|++.....+.. .. ...++||||..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHE------------FQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT------------TCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC------------CCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcH
Confidence 479999999999999999999742111 12234455543333332 21 23599999953
No 252
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.75 E-value=1.3e-05 Score=75.55 Aligned_cols=58 Identities=19% Similarity=0.126 Sum_probs=34.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
+..+++++|.+|||||||+|+|.+.... ...+..|++...+.+. .....++||||...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-------------~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-------------QHVPTLHPTSEELTIA--GMTFTTFDLGGHIQ 81 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------------------CCCCCSCEEEEET--TEEEEEEEECC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-------------ccCCCCCceeEEEEEC--CEEEEEEECCCcHh
Confidence 3458999999999999999999864210 1223344554333322 11346999999643
No 253
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.74 E-value=4.9e-05 Score=69.17 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999975
No 254
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.74 E-value=4.7e-05 Score=68.68 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999965
No 255
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.74 E-value=2.3e-05 Score=72.36 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=36.6
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCcc
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVH 342 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~ 342 (553)
+..+++++|.+|||||||+|+|.+.. . ....+..|++...+.+. .....++||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~------------~~~~~t~~~~~~~~~~~--~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-V------------DTISPTLGFNIKTLEHR--GFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-C------------SSCCCCSSEEEEEEEET--TEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-C------------CcccccCccceEEEEEC--CEEEEEEECCCCH
Confidence 34589999999999999999999753 1 01223334444322221 1124699999974
No 256
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.73 E-value=0.00015 Score=81.96 Aligned_cols=123 Identities=13% Similarity=-0.033 Sum_probs=70.2
Q ss_pred cccccccCCCcccccCccccccCCC-----CCcccCCch-h---hHh-hhccCccceEEEEEEecC-------CccEEEe
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESD-----APGYVDPDT-Y---ELK-KKHHQFKTVLCGRCRLLS-------HGHMITA 152 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~-----~~GY~~~~~-f---~t~-~~~~~~rd~ic~Rc~~l~-------~~~~~~d 152 (553)
+.+.+.+++...+|+++++...-.. ..|-+.++. + ... +....+-...+..+.+.. +...++|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 4457888899999999998766321 111111110 0 000 000111112223444444 6678999
Q ss_pred cCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCC
Q 008807 153 VGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKG 224 (553)
Q Consensus 153 TaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~ 224 (553)
|+|.. .|......++..+|.+|+|+|+.+........+...+ .+.|+++|+||+|+...+
T Consensus 89 TPG~~------------df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 89 TPGHV------------DFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred CCCcc------------chHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccccc
Confidence 98853 2333445556689999999999875432222222221 368999999999987543
No 257
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.72 E-value=0.0001 Score=72.72 Aligned_cols=123 Identities=12% Similarity=0.028 Sum_probs=74.4
Q ss_pred cccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccHH
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSAD 169 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e 169 (553)
+..++..+|...+|++++++..-.....++.+....| .+.....+...+....++||+|...|.. ..+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-------~~~~~~~~~~~~~~l~liDTpG~~~~~~-----~~~ 102 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG-------LRPVMVSRTMGGFTINIIDTPGLVEAGY-----VNH 102 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-C-------CCCEEEEEEETTEEEEEEECCCSEETTE-----ECH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-------eeeEEEEEEECCeeEEEEECCCCCCccc-----chH
Confidence 4568899999999999999876654332332211111 1344445555566778999998754432 223
Q ss_pred HHHHHHHHhh--hcccEEEEEcccC--CCC---hhhHHHHHHHhC---CCCEEEEEEcccCCCCC
Q 008807 170 ELREKLSHLR--REKALIVKLVDIV--DFN---GSFLARIRDLAG---ANPIILVVTKVDLLPKG 224 (553)
Q Consensus 170 ~~~~~l~~~~--~~adlIl~VVD~~--d~~---~s~~~~l~~~~~---~~pvIlVlNKiDLl~~~ 224 (553)
.+.+.+...+ ..+|++++|+|+. .+. ..++..+....+ ..|+++|+||+|+.+.+
T Consensus 103 ~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 103 QALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp HHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 3333333333 3689999996654 333 234444544433 24899999999997543
No 258
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.72 E-value=2.8e-05 Score=71.99 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=34.9
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
..+++++|.+|||||||+|+|.+.... ...+..|.+...+.+. .....++||||...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~-------------~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV-------------HTSPTIGSNVEEIVIN--NTRFLMWDIGGQES 72 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE-------------EEECCSCSSCEEEEET--TEEEEEEECCC---
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-------------cCcCCCccceEEEEEC--CEEEEEEECCCCHh
Confidence 458999999999999999999964211 1223344443322221 12346999999743
No 259
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.72 E-value=3.9e-05 Score=68.96 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999875
No 260
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.72 E-value=8.7e-05 Score=73.58 Aligned_cols=124 Identities=10% Similarity=0.026 Sum_probs=71.8
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
....++..+|.+.+|+++++++.-......+.+.. ....+.....+...+....++||+|...|. ...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~-----~~~ 104 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQ-------SEGPRPVMVSRSRAGFTLNIIDTPGLIEGG-----YIN 104 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSS-------CCCSSCEEEEEEETTEEEEEEECCCSEETT-----EEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCC-------CcceeeEEEEEeeCCeEEEEEECCCCCCCc-----cch
Confidence 34568899999999999999876543221111111 011133333444555567899998864332 112
Q ss_pred HHHHHHHHHh--hhcccEEEEEcccCC--CCh---hhHHHHHHHhCC---CCEEEEEEcccCCCCC
Q 008807 169 DELREKLSHL--RREKALIVKLVDIVD--FNG---SFLARIRDLAGA---NPIILVVTKVDLLPKG 224 (553)
Q Consensus 169 e~~~~~l~~~--~~~adlIl~VVD~~d--~~~---s~~~~l~~~~~~---~pvIlVlNKiDLl~~~ 224 (553)
+.+.+.+... ...+|++|+|+|+.. +.. .++..+....+. .|+++|+||+|+.+.+
T Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 3333333332 236899999976643 321 333444433332 5899999999998654
No 261
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.71 E-value=7.1e-05 Score=84.66 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=30.5
Q ss_pred EEeccCCccChhhhHHHHHHh---h---------cccceEEeccCCCChhHHHHHHHhhhC
Q 008807 249 HLTSSKSLAGIVGVASEIQKE---K---------KGRDVYILGSANVGKSAFINALLKKMG 297 (553)
Q Consensus 249 i~iSAk~g~gi~~Ll~~L~~~---~---------~g~~v~ivG~~NVGKSTLIN~L~~~~~ 297 (553)
...+|-.+.|+++|+..+.+. + .--.++|+|.+|+|||||||+|++...
T Consensus 16 ~~~~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 16 PRGSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp ---------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CcccccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 445666778888877665442 1 123799999999999999999998643
No 262
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.70 E-value=8.5e-05 Score=76.96 Aligned_cols=114 Identities=16% Similarity=0.130 Sum_probs=69.2
Q ss_pred CCccEEEecCCCCCccCC-CccccHHHHHHHHHHhhhcccEEEEEcccCCCC---hhhHHHHHHHh-CCCCEEEEEEccc
Q 008807 145 SHGHMITAVGGNGGYAGG-KQFVSADELREKLSHLRREKALIVKLVDIVDFN---GSFLARIRDLA-GANPIILVVTKVD 219 (553)
Q Consensus 145 ~~~~~~~dTaG~vgf~~~-~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~---~s~~~~l~~~~-~~~pvIlVlNKiD 219 (553)
.....++||+|...+... .+....+.+.+....++.++|+||+++|..+.+ ......+..+. .+.|+|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 346789999886543221 123445677777788888999999999875433 12222222221 2578999999999
Q ss_pred CCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHH
Q 008807 220 LLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVAS 264 (553)
Q Consensus 220 Ll~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~ 264 (553)
++++..... +.+.. ....++ ..++.+|+.++.+++++.+
T Consensus 215 l~~~~~~~~---~~~~~--~~~~~~-~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 215 LMDKGTDAV---EILEG--RSFKLK-YPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp GCCTTCCSH---HHHTT--SSSCCS-SCCEEECCCCHHHHHTTCC
T ss_pred cCCCcccHH---HHHcC--cccccc-CCeEEEEECChHHhccCCC
Confidence 987653221 11100 011222 3467889999888876543
No 263
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.70 E-value=5e-05 Score=71.14 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=21.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 347999999999999999999875
No 264
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.70 E-value=5.1e-05 Score=70.97 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++|+|.+|||||||+|+|.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999965
No 265
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.69 E-value=1.9e-05 Score=72.89 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=37.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~ 342 (553)
..+++++|.+|||||||+|+|.+... ...++..|++...+.+. .....|+||||..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~-------------~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV-------------VHTSPTIGSNVEEIVIN--NTRFLMWDIGGQE 76 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC-------------EEEECCSSSSCEEEEET--TEEEEEEEESSSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-------------CccCCcCceeeEEEEEC--CEEEEEEECCCCH
Confidence 34899999999999999999997522 12334456554333321 1234699999974
No 266
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.69 E-value=7.9e-05 Score=72.97 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=65.2
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHH---HH--HhCCCCEEEEEEcc
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG--SFLARI---RD--LAGANPIILVVTKV 218 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l---~~--~~~~~pvIlVlNKi 218 (553)
+...++||+|...+. ....+...+...+.+ ++|++++|+..... ++...+ .. .....|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~------~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETF------LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHH------HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCG
T ss_pred CCEEEEeCCCccchh------hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecc
Confidence 467899998752110 001112223344456 99999999875432 111111 01 11267999999999
Q ss_pred cCCCCCCChhhHHHHHHH------HHh----------------hcccC-ceeEEEeccCCccChhhhHHHHHHhh
Q 008807 219 DLLPKGTDFNCVGDWVVE------ATT----------------KKKLN-VLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 219 DLl~~~~~~~~~~~~~~~------~~~----------------~~~l~-~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
|+.+... ...+.+++.+ .+. ...++ ...++.+||+++.|+++|++.|.+.+
T Consensus 182 D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 182 DLLSEEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp GGCCHHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 9875421 1112222110 000 01112 13679999999999999999887654
No 267
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.69 E-value=4.3e-05 Score=75.27 Aligned_cols=82 Identities=20% Similarity=0.125 Sum_probs=52.5
Q ss_pred cccEEEEEcccCCC--C-----hhhHHHHHHH--hCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEe
Q 008807 181 EKALIVKLVDIVDF--N-----GSFLARIRDL--AGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLT 251 (553)
Q Consensus 181 ~adlIl~VVD~~d~--~-----~s~~~~l~~~--~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~i 251 (553)
++|++|+|+|+++. . ..++..+... ..+.|+++|+||+||..... .....++ .....+ ..++.+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-v~~~~~~-----~~~~~~-~~~~e~ 234 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-IRDAHTF-----ALSKKN-LQVVET 234 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-HHHHHHH-----HHTSSS-CCEEEC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-HHHHHHH-----HHhcCC-CeEEEE
Confidence 58999999999985 2 1222333322 14689999999999953211 1111222 111123 467899
Q ss_pred ccCCccChhhhHHHHHHh
Q 008807 252 SSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 252 SAk~g~gi~~Ll~~L~~~ 269 (553)
||+++.|++++++.|.+.
T Consensus 235 SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 235 SARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999888654
No 268
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.69 E-value=5.6e-05 Score=69.19 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.7
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 358999999999999999999975
No 269
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.69 E-value=5.8e-05 Score=67.76 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 270
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.68 E-value=4.2e-05 Score=70.90 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=36.6
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~ 342 (553)
.+++++|.+|||||||+|+|.+..... ...+..|++.....+..... ...|+||||..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTP------------AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCC------------SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC------------CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 379999999999999999998752211 12233455553333332111 23589999964
No 271
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.67 E-value=6.1e-05 Score=67.17 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999865
No 272
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.67 E-value=5e-05 Score=82.00 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=46.4
Q ss_pred hHHHHHHhhcccceEEeccCCCChhHHHHHHHhhhCCCCh--hhhh---h---h---------hcCCccCCCCCceeecE
Q 008807 262 VASEIQKEKKGRDVYILGSANVGKSAFINALLKKMGERDP--AAAM---A---Q---------KYRPIQSAVPGTTLGPI 324 (553)
Q Consensus 262 Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~--~~~~---~---~---------~~~~~~S~~PGTT~~~i 324 (553)
+.+.+.+..+..+++++|.+|+|||||+|+|+.....-.. .... + + .........+|+|.+..
T Consensus 23 i~~~l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~ 102 (483)
T 3p26_A 23 ISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSIC 102 (483)
T ss_dssp HHHHHHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCC
T ss_pred HHHHHhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEee
Confidence 4445555455568999999999999999999876221110 0000 0 0 01222344678988755
Q ss_pred EEEeecCC--cEEEEcCCccC
Q 008807 325 QIDAFLGG--GKLYDTPGVHL 343 (553)
Q Consensus 325 ~i~~~~~~--~~liDTPGi~~ 343 (553)
...+...+ ..|+||||...
T Consensus 103 ~~~~~~~~~~~~iiDTPG~~~ 123 (483)
T 3p26_A 103 TSHFSTHRANFTIVDAPGHRD 123 (483)
T ss_dssp EEEEECSSCEEEEECCCCCGG
T ss_pred eEEEecCCceEEEEECCCcHH
Confidence 54433233 45999999854
No 273
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.66 E-value=4.6e-05 Score=69.23 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999975
No 274
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.66 E-value=8.2e-05 Score=68.08 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999964
No 275
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.66 E-value=6.4e-05 Score=69.03 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999865
No 276
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.65 E-value=2.8e-05 Score=72.35 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=36.1
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
..+++|+|.+|||||||+|+|.+..... ...++..|++... +........|+||||...
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~-----------~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSS-----------KHITATVGYNVET--FEKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC---------------CCCCCSSEEEEE--EEETTEEEEEEEECCSGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcc-----------cccccccceeEEE--EEeCCEEEEEEECCCCHh
Confidence 3489999999999999999998752110 0013344544432 221111246999999743
No 277
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.65 E-value=4.1e-05 Score=71.08 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 348999999999999999999875
No 278
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.65 E-value=2.1e-05 Score=75.07 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=39.7
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~ 342 (553)
.+++++|.+|||||||+|+++... .....++.+|+|.....+..... ...|+||||..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGE------------FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHH------------HTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC------------CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChH
Confidence 479999999999999999965431 11234567888886555442111 23589999964
No 279
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.64 E-value=4.6e-05 Score=68.42 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.4
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999875
No 280
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.64 E-value=6.1e-05 Score=69.92 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++|+|.+|||||||+|+|.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999975
No 281
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.63 E-value=6.6e-05 Score=70.83 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=21.8
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..+++++|.+|||||||+|+|...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3458999999999999999999864
No 282
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.63 E-value=8e-05 Score=69.98 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++|+|.+|||||||+|+|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 283
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.62 E-value=5.1e-05 Score=71.76 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=36.2
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~ 342 (553)
..+++++|.+|||||||+|+|.+... ....+.|+.+...+..-.. ...|+||||..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY---------------RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC---------------CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc---------------ccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 35899999999999999999997521 1223444444333332111 14699999964
No 284
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.62 E-value=8.4e-05 Score=68.76 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=21.4
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||||+|++.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999976
No 285
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.62 E-value=4.6e-05 Score=69.42 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999975
No 286
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.62 E-value=1.4e-05 Score=84.83 Aligned_cols=59 Identities=39% Similarity=0.482 Sum_probs=35.4
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~~~ 344 (553)
.+++|+|.+|||||||+|+|++.. ...++..+|||.+......... ...|+||||+...
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~-------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQN-------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC--------------------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC-------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 479999999999999999998652 1234667899987554433222 3469999998654
No 287
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=5.3e-05 Score=70.08 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=37.0
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~ 342 (553)
..+++++|.+|||||||+|+|.+.... ....+..|++.....+.. .. ...|+||||..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~------------~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD------------PELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC------------TTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC------------ccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCch
Confidence 358999999999999999999875211 112233455543333332 22 24589999964
No 288
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.61 E-value=8.4e-05 Score=68.81 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999865
No 289
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.60 E-value=5.9e-05 Score=70.64 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=36.7
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|.+..... ...+..|++.....+.. .. ...|+||||...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTP------------AFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLER 69 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCS------------CCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC------------CcCCccceeEEEEEEEE-CCeEEEEEEEECCCchh
Confidence 379999999999999999998752111 11223355543333332 21 236999999743
No 290
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.60 E-value=7.4e-05 Score=68.18 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999975
No 291
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.60 E-value=8.9e-05 Score=69.28 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=34.9
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC----cEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG----GKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~----~~liDTPGi~~~ 344 (553)
..+++++|.+|||||||+|+|.+... .+..+.||.+........++ ..|+||||....
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 81 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGY---------------PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-----------------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC---------------CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHH
Confidence 45899999999999999999986421 12233455443322222222 349999998543
No 292
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.60 E-value=3.6e-05 Score=71.60 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 347999999999999999999874
No 293
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.60 E-value=8.5e-05 Score=68.12 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999964
No 294
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.59 E-value=8.1e-05 Score=69.77 Aligned_cols=149 Identities=20% Similarity=0.091 Sum_probs=85.2
Q ss_pred cccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCC--ccEEEecCCCCCccCCCcccc
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSH--GHMITAVGGNGGYAGGKQFVS 167 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~--~~~~~dTaG~vgf~~~~~~~l 167 (553)
.++..+|...+|++++++...... ..|.+.. ..+...+.+...+. ...++||+|...|.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~----------~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~------- 68 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI----------GVEFATRSIQVDGKTIKAQIWDTAGQERYR------- 68 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCC----------SCEEEEEEEEETTEEEEEEEEECSSGGGTT-------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc----------ceeEEEEEEEECCEEEEEEEEECCCchhhh-------
Confidence 467888999999999997654321 1111110 01333445555432 24568997743221
Q ss_pred HHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHHhh
Q 008807 168 ADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEATTK 240 (553)
Q Consensus 168 ~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~~~ 240 (553)
.........++.+++|+|+.+... .+...+.... ...|+++|+||+||..... .......+.
T Consensus 69 -----~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~------ 137 (199)
T 2f9l_A 69 -----RITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA------ 137 (199)
T ss_dssp -----CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------
T ss_pred -----hhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHH------
Confidence 111222457899999999986421 1222332221 3578999999999965322 122222221
Q ss_pred cccCceeEEEeccCCccChhhhHHHHHHh
Q 008807 241 KKLNVLSVHLTSSKSLAGIVGVASEIQKE 269 (553)
Q Consensus 241 ~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~ 269 (553)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 138 ~~~~-~~~~d~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 138 EKNN-LSFIETSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHTT-CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcC-CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 1122 245669999999999999888654
No 295
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.59 E-value=5.9e-05 Score=70.63 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|++.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999864
No 296
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.57 E-value=6.1e-05 Score=70.20 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.5
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 297
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.57 E-value=9.4e-05 Score=69.95 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999999875
No 298
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.56 E-value=2.1e-05 Score=72.22 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=10.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999864
No 299
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.56 E-value=0.00034 Score=76.67 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=51.1
Q ss_pred EEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEE
Q 008807 139 GRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVT 216 (553)
Q Consensus 139 ~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlN 216 (553)
-.|.+.++...++||+|-+.|. ...+.++.-+|-+|.|||+.+--..--..+...+ .+.|+|+++|
T Consensus 93 ~~~~~~~~~iNlIDTPGHvDF~------------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fIN 160 (548)
T 3vqt_A 93 MQFPYRDRVVNLLDTPGHQDFS------------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVN 160 (548)
T ss_dssp EEEEETTEEEEEECCCCGGGCS------------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCEEEEEEeCCCcHHHH------------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEe
Confidence 4567777888999999876443 2234445678999999999875433333332222 4789999999
Q ss_pred cccCCCCC
Q 008807 217 KVDLLPKG 224 (553)
Q Consensus 217 KiDLl~~~ 224 (553)
|+|....+
T Consensus 161 K~Dr~~ad 168 (548)
T 3vqt_A 161 KMDREALH 168 (548)
T ss_dssp CTTSCCCC
T ss_pred cccchhcc
Confidence 99986543
No 300
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.56 E-value=6.4e-05 Score=80.23 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=41.5
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhh--h---hh-hh-----------cCCccCCCCCceeecEEEEeecC--Cc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAA--A---MA-QK-----------YRPIQSAVPGTTLGPIQIDAFLG--GG 333 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~--~---~~-~~-----------~~~~~S~~PGTT~~~i~i~~~~~--~~ 333 (553)
.+++++|.+|+|||||+|+|+.....-.... . .+ .. ........+|+|.+.....+... ..
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~ 97 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHF 97 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEE
Confidence 4899999999999999999986532211000 0 00 00 01112234789987544332222 24
Q ss_pred EEEEcCCccC
Q 008807 334 KLYDTPGVHL 343 (553)
Q Consensus 334 ~liDTPGi~~ 343 (553)
.|+||||...
T Consensus 98 ~iiDTPGh~~ 107 (439)
T 3j2k_7 98 TILDAPGHKS 107 (439)
T ss_pred EEEECCChHH
Confidence 6999999653
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.56 E-value=9e-05 Score=68.68 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=65.3
Q ss_pred ccccccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecCCccEEEecCCCCCccCCCccccH
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYAGGKQFVSA 168 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~ 168 (553)
.+..++..+|...+|++++++....... .. ...+. .+.... ........++||+|...|.. ...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~---~~-~~~~~-------~~~~~~-~~~~~~~~l~Dt~G~~~~~~----~~~ 109 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSV---RP-TVVSQ-------EPLSAA-DYDGSGVTLVDFPGHVKLRY----KLS 109 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSC---C---------------------CCCCTTCSEEEETTCCBSSC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC---Cc-ccccC-------CCceee-eecCCeEEEEECCCCchHHH----HHH
Confidence 4456889999999999999986543210 00 00000 111111 11345678999998654321 112
Q ss_pred HHHHHHHHHhhhcccEEEEEcccC-CCCh-----hhHHHHHHHh-----CCCCEEEEEEcccCCCCC
Q 008807 169 DELREKLSHLRREKALIVKLVDIV-DFNG-----SFLARIRDLA-----GANPIILVVTKVDLLPKG 224 (553)
Q Consensus 169 e~~~~~l~~~~~~adlIl~VVD~~-d~~~-----s~~~~l~~~~-----~~~pvIlVlNKiDLl~~~ 224 (553)
..+......+|++++|+|+. +... .++..+.... .+.|+++|+||+|+....
T Consensus 110 ----~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 110 ----DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp ----HHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ----HHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 22333345689999999998 4321 1122221111 368999999999998654
No 302
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.55 E-value=3.1e-05 Score=71.05 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=33.9
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
..+++++|.+|||||||+|+|.+... ....+..|.+...+.+. .....++||||...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~-------------~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV-------------VTTKPTIGFNVETLSYK--NLKLNVWDLGGQTS 74 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE-------------EEECSSTTCCEEEEEET--TEEEEEEEEC----
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc-------------CccCCcCccceEEEEEC--CEEEEEEECCCCHh
Confidence 45899999999999999999985421 11233444443322221 12346999999854
No 303
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.55 E-value=5.3e-05 Score=70.99 Aligned_cols=58 Identities=29% Similarity=0.306 Sum_probs=33.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC---CcEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG---GGKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~---~~~liDTPGi~ 342 (553)
..+++++|.+|||||||+|+|.+..... ...+..|++.....+.. .. ...|+||||..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRE------------NISATLGVDFQMKTLIV-DGERTVLQLWDTAGQE 88 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------CEEEEEEE-TTEEEEEEEEECTTCT
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCc------------cCCCCccceeEEEEEEE-CCEEEEEEEEECCCCc
Confidence 3589999999999999999998752111 12233454443223332 22 14599999964
No 304
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.54 E-value=8.6e-05 Score=69.73 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999975
No 305
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.54 E-value=0.00011 Score=67.53 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999974
No 306
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.53 E-value=3.1e-05 Score=73.48 Aligned_cols=61 Identities=25% Similarity=0.350 Sum_probs=37.7
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC---cEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG---GKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~---~~liDTPGi~~~ 344 (553)
..+++++|.+|||||||+|+|++.... ....+..|++.....+...... ..|+||||....
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFE------------KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK 74 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTT------------CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC------------CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh
Confidence 348999999999999999999864211 1122344555433333221111 358999997543
No 307
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.53 E-value=0.00013 Score=68.34 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.8
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 458999999999999999999975
No 308
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.52 E-value=6.8e-05 Score=70.43 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.0
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 348999999999999999999864
No 309
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.52 E-value=4.5e-05 Score=70.62 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|...
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999999753
No 310
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.52 E-value=7.2e-05 Score=70.93 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=37.9
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCccC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHL 343 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~~ 343 (553)
.+++++|.+|||||||+|+|.+.... ....+..|+++.+. ......++||||...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~-----------~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVR-----------PTVVSQEPLSAADY-----DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCC-----------CBCCCSSCEEETTG-----GGSSCEEEECCCCGG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-----------CeeeecCceEEEEe-----eCceEEEEECCCcHH
Confidence 47999999999999999999975311 11123445555533 233567999999843
No 311
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.51 E-value=6.7e-05 Score=69.54 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.7
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999875
No 312
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.51 E-value=0.00012 Score=66.94 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 313
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.51 E-value=5.3e-05 Score=71.10 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.6
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999753
No 314
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.51 E-value=2.7e-05 Score=86.56 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..+++++|.+|||||||+|+|+..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHh
Confidence 3458999999999999999999865
No 315
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.51 E-value=0.00014 Score=67.59 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.7
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 348999999999999999999975
No 316
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=9.2e-05 Score=69.86 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999975
No 317
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.50 E-value=0.00014 Score=67.61 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..+++++|.+|||||||+|+|.+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3458999999999999999999875
No 318
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.49 E-value=4.8e-05 Score=68.66 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||+|+|.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999854
No 319
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.49 E-value=5.2e-05 Score=78.13 Aligned_cols=108 Identities=16% Similarity=0.035 Sum_probs=60.5
Q ss_pred CCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCC
Q 008807 145 SHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKG 224 (553)
Q Consensus 145 ~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~ 224 (553)
++...++||+|..- ... .+...+|++++|+|+.+.+. ...+.....+.|.++|+||+|+....
T Consensus 148 ~~~i~liDTpG~~~---------~~~------~~~~~aD~vl~Vvd~~~~~~--~~~l~~~~~~~p~ivv~NK~Dl~~~~ 210 (341)
T 2p67_A 148 GYDVVIVETVGVGQ---------SET------EVARMVDCFISLQIAGGGDD--LQGIKKGLMEVADLIVINKDDGDNHT 210 (341)
T ss_dssp TCSEEEEEEECCTT---------HHH------HHHTTCSEEEEEECC--------CCCCHHHHHHCSEEEECCCCTTCHH
T ss_pred CCCEEEEeCCCccc---------hHH------HHHHhCCEEEEEEeCCccHH--HHHHHHhhhcccCEEEEECCCCCChH
Confidence 56789999988531 111 12468999999999875421 00010000135789999999997431
Q ss_pred CChhhHHHHHHHHHhhccc--C--ceeEEEeccCCccChhhhHHHHHHhh
Q 008807 225 TDFNCVGDWVVEATTKKKL--N--VLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l--~--~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
......+.+.+.+..... . ...++.+||++|.|+++|++.|.+..
T Consensus 211 -~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 211 -NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp -HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 111111111111111010 0 24688999999999999999987644
No 320
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.47 E-value=3.8e-05 Score=71.44 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=36.6
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC--cEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG--GKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~--~~liDTPGi~ 342 (553)
.+++|+|.+|||||||+|+|.+..... ...+..|++.....+.....+ ..|+||||..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTP------------AFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCC------------CEEEEETTTEEEEEEEETTTTEEEEEECHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCc------------ccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 479999999999999999999753211 111223455443333321222 4599999953
No 321
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.47 E-value=5.8e-05 Score=68.69 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999999975
No 322
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.46 E-value=0.00018 Score=66.72 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999975
No 323
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.44 E-value=0.00013 Score=67.74 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999975
No 324
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.44 E-value=0.00017 Score=74.66 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=21.4
Q ss_pred ceEEeccCCCChhHHHHHHHhhh
Q 008807 274 DVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
.++|||.+|||||||+|+|.+..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 325
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.42 E-value=0.00013 Score=69.83 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|++.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999853
No 326
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00018 Score=68.65 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++|+|.+|||||||+|+|.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 327
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.41 E-value=0.00011 Score=67.13 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999875
No 328
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.41 E-value=0.00096 Score=69.19 Aligned_cols=166 Identities=7% Similarity=-0.023 Sum_probs=61.8
Q ss_pred ccccccccCCCcccccCccccccCC---CCCcccCCchhhHhhhccCccceEEEEEEe--cC--CccEEEecCCCCCccC
Q 008807 89 DKVLKVNSAVASCYGCGAPLQTSES---DAPGYVDPDTYELKKKHHQFKTVLCGRCRL--LS--HGHMITAVGGNGGYAG 161 (553)
Q Consensus 89 ~~~~~~~~~~~~C~GCG~~LQ~~d~---~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~--l~--~~~~~~dTaG~vgf~~ 161 (553)
.....+.++|...+|+++++++.-. ...+|.+...-.. ............. .+ ....++||+|...++.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~----~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~ 110 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKI----ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN 110 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC-------------------CEEEEEEEEC----CEEEEEEEEC---------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCccc----CCceeEEEEEEEeecCCcccceEEEEeccccccCc
Confidence 3345789999999999999988422 1233332110000 0000111111111 11 1356889987643322
Q ss_pred CC--ccccH----HHHHHHHHHhhh---------cccEEEEEccc-CCCChhhHHHHH-HHhCCCCEEEEEEcccCCCCC
Q 008807 162 GK--QFVSA----DELREKLSHLRR---------EKALIVKLVDI-VDFNGSFLARIR-DLAGANPIILVVTKVDLLPKG 224 (553)
Q Consensus 162 ~~--~~~l~----e~~~~~l~~~~~---------~adlIl~VVD~-~d~~~s~~~~l~-~~~~~~pvIlVlNKiDLl~~~ 224 (553)
.. -.... +.|...+..... ..++++++||. .+........+. .+....|+|+|+||+|+....
T Consensus 111 ~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 111 CRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHH
Confidence 10 01112 223333332210 12457777765 332222222222 222468999999999997542
Q ss_pred CChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhH
Q 008807 225 TDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVA 263 (553)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll 263 (553)
. .....+-+.+.+ ...+ ..++.+||+++.+ ++.+
T Consensus 191 e-v~~~k~~i~~~~--~~~~-i~~~~~Sa~~~~~-~e~~ 224 (361)
T 2qag_A 191 E-RERLKKRILDEI--EEHN-IKIYHLPDAESDE-DEDF 224 (361)
T ss_dssp H-HHHHHHHHHHHT--TCC--CCSCCCC----------C
T ss_pred H-HHHHHHHHHHHH--HHCC-CCEEeCCCcCCCc-chhH
Confidence 1 111111111111 1223 3578899999987 4433
No 329
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.41 E-value=4.2e-05 Score=84.72 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|+|||||+|+|+..
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 330
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.00024 Score=66.17 Aligned_cols=24 Identities=42% Similarity=0.582 Sum_probs=21.8
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999999975
No 331
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.39 E-value=0.00013 Score=77.12 Aligned_cols=58 Identities=31% Similarity=0.334 Sum_probs=39.9
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEe-ec--CCcEEEEcCCccC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDA-FL--GGGKLYDTPGVHL 343 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~-~~--~~~~liDTPGi~~ 343 (553)
+..+.++|.+|||||||||+|.+. .+.++..|.||+.+..-.. .. ....++||||+..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~--------------~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRA--------------HPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSS--------------CCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC--------------CccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 457999999999999999999864 1234567777775322111 12 2246999999854
No 332
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.38 E-value=0.00077 Score=69.31 Aligned_cols=119 Identities=10% Similarity=0.116 Sum_probs=76.1
Q ss_pred EEEEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC---------hhhH---HHHHHH
Q 008807 138 CGRCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN---------GSFL---ARIRDL 205 (553)
Q Consensus 138 c~Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~---------~s~~---~~l~~~ 205 (553)
.......+....++|||| .+.++..-....++++.||+|+|+++++ .++. ..+..+
T Consensus 153 ~~~~~~~~v~l~iwDtaG------------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 153 EYDFVVKDIPFHLIDVGG------------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp EEEEESSSCEEEEEECCS------------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred EEEEEeeeeeeccccCCC------------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 334444455678999987 3677777777788999999999998432 1111 122222
Q ss_pred h-----CCCCEEEEEEcccCCCCC----------------CChhhHHHHHHHHH------hhcc---c-----------C
Q 008807 206 A-----GANPIILVVTKVDLLPKG----------------TDFNCVGDWVVEAT------TKKK---L-----------N 244 (553)
Q Consensus 206 ~-----~~~pvIlVlNKiDLl~~~----------------~~~~~~~~~~~~~~------~~~~---l-----------~ 244 (553)
+ .+.|++||+||+||..+. ...+...+|+.+.+ .... . .
T Consensus 221 ~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNE 300 (340)
T ss_dssp HHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------C
T ss_pred hhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCc
Confidence 2 457999999999986321 12334455665544 1100 0 1
Q ss_pred ceeEEEeccCCccChhhhHHHHHH
Q 008807 245 VLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 245 ~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
....+.+||++..+++.+++.+.+
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~ 324 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVD 324 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHH
Confidence 134688999999999988877764
No 333
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.36 E-value=8.6e-05 Score=67.83 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999865
No 334
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.35 E-value=0.001 Score=74.70 Aligned_cols=119 Identities=17% Similarity=0.071 Sum_probs=65.6
Q ss_pred ccccccCCCcccccCccccccCCC-----CCcccCCch----hhHh-hhccCccceEEEEEEecCCccEEEecCCCCCcc
Q 008807 91 VLKVNSAVASCYGCGAPLQTSESD-----APGYVDPDT----YELK-KKHHQFKTVLCGRCRLLSHGHMITAVGGNGGYA 160 (553)
Q Consensus 91 ~~~~~~~~~~C~GCG~~LQ~~d~~-----~~GY~~~~~----f~t~-~~~~~~rd~ic~Rc~~l~~~~~~~dTaG~vgf~ 160 (553)
...+.+++...+|+++++...-.. ..|-+..+. +... ....-.-......+....+...++||+|..
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~--- 85 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG--- 85 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG---
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc---
Confidence 446777788888888887655310 111110000 0000 000111122223344445567899998753
Q ss_pred CCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCC
Q 008807 161 GGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLL 221 (553)
Q Consensus 161 ~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl 221 (553)
.|......++..+|.+++|+|+.+........+...+ .+.|+++|+||+|+.
T Consensus 86 ---------~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 ---------DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp ---------GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ---------chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 2333445556689999999998765433222222222 468999999999997
No 335
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.35 E-value=0.00049 Score=64.09 Aligned_cols=150 Identities=19% Similarity=0.079 Sum_probs=86.3
Q ss_pred cccccccCCCcccccCccccccCCCC--CcccCCchhhHhhhccCccceEEEEEEecCCc--cEEEecCCCCCccCCCcc
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESDA--PGYVDPDTYELKKKHHQFKTVLCGRCRLLSHG--HMITAVGGNGGYAGGKQF 165 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~~--~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~~~--~~~~dTaG~vgf~~~~~~ 165 (553)
...++..+|...+|++++++...... ..|.+.. ..+...+.+...+.. ..+.||+|...|..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~----------~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~---- 93 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI----------GVEFATRSIQVDGKTIKAQIWDTAGLERYRA---- 93 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCC----------SEEEEEEEEEETTEEEEEEEEEECSCCSSSC----
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc----------ceEEEEEEEEECCEEEEEEEEECCCCcchhh----
Confidence 34578999999999999998654221 1111110 002334455554332 34589987543321
Q ss_pred ccHHHHHHHHHHhhhcccEEEEEcccCCCCh-----hhHHHHHHHh-CCCCEEEEEEcccCCCCCC-ChhhHHHHHHHHH
Q 008807 166 VSADELREKLSHLRREKALIVKLVDIVDFNG-----SFLARIRDLA-GANPIILVVTKVDLLPKGT-DFNCVGDWVVEAT 238 (553)
Q Consensus 166 ~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~-----s~~~~l~~~~-~~~pvIlVlNKiDLl~~~~-~~~~~~~~~~~~~ 238 (553)
. .......++.+++|+|+.+... .+...+.... ...|+++|+||+||..... .......+.
T Consensus 94 ~--------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~---- 161 (191)
T 1oix_A 94 I--------TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFA---- 161 (191)
T ss_dssp C--------CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH----
T ss_pred h--------hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHH----
Confidence 1 1122456788999999886431 1222333222 3578999999999965322 122222221
Q ss_pred hhcccCceeEEEeccCCccChhhhHHHHHH
Q 008807 239 TKKKLNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 239 ~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
...+ ..++.+||+++.|++++++.|.+
T Consensus 162 --~~~~-~~~ld~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 162 --EKNG-LSFIETSALDSTNVEAAFQTILT 188 (191)
T ss_dssp --HHTT-CEEEECCTTTCTTHHHHHHHHHH
T ss_pred --HHcC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence 1122 24566999999999999988865
No 336
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.33 E-value=7.7e-05 Score=69.72 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=5.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 48999999999999999999865
No 337
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.31 E-value=0.00034 Score=65.89 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 338
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.31 E-value=0.00017 Score=77.89 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=35.9
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCCcEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~~~liDTPGi~ 342 (553)
..+++++|.+|||||||+|+|.+... ....+..|++... +....-...|+||||..
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-------------~~~~~T~~~~~~~--~~~~~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-------------VTTIPTVGFNVET--VTYKNVKFNVWDVGGQD 377 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-------------CCCCCCSSEEEEE--EESSSCEEEEEEECCCG
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-------------CCcCCccceeEEE--EEeCCEEEEEEECCCcH
Confidence 45899999999999999999987521 1122333444332 22111234699999954
No 339
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.31 E-value=0.00037 Score=76.10 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=70.3
Q ss_pred cccccccCCCcccccCccccccCCC-----CCcccCCc---hhhHh------hhccCccceEEEEEEecCCccEEEecCC
Q 008807 90 KVLKVNSAVASCYGCGAPLQTSESD-----APGYVDPD---TYELK------KKHHQFKTVLCGRCRLLSHGHMITAVGG 155 (553)
Q Consensus 90 ~~~~~~~~~~~C~GCG~~LQ~~d~~-----~~GY~~~~---~f~t~------~~~~~~rd~ic~Rc~~l~~~~~~~dTaG 155 (553)
+...+.+.|...+|+++++...-.. ..|-+... ...+. +..+.........+...++...++||+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 3457888899999999988765421 11111110 00000 0000001111234555566778999998
Q ss_pred CCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCCC
Q 008807 156 NGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPKG 224 (553)
Q Consensus 156 ~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~~ 224 (553)
...|. ......+..+|.+|+|+|+.+........+...+ .+.|+++|+||+|+...+
T Consensus 92 ~~df~------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 92 HEDFS------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp STTCC------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred ChhHH------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 64332 2234456789999999999886544444444433 368999999999997543
No 340
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.30 E-value=0.00032 Score=64.55 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999875
No 341
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.30 E-value=0.00023 Score=67.57 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=21.0
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 348999999999999999999864
No 342
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.30 E-value=2.8e-05 Score=72.89 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 343
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.30 E-value=0.0002 Score=67.25 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 47999999999999999999865
No 344
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.29 E-value=0.00037 Score=71.36 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=74.4
Q ss_pred EEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC---------hhh---HHHHHHHh-
Q 008807 140 RCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN---------GSF---LARIRDLA- 206 (553)
Q Consensus 140 Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~---------~s~---~~~l~~~~- 206 (553)
.....+....++||||- +.++..-.+..++++.||+|+|+++++ .++ ...+..+.
T Consensus 161 ~~~~~~v~l~iwDtgGQ------------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~ 228 (327)
T 3ohm_A 161 PFDLQSVIFRMVDVGGQ------------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT 228 (327)
T ss_dssp EEEETTEEEEEEEECCS------------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred EEEeeceeeEEEEcCCc------------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence 33344456689999873 566666666778999999999887321 111 22223232
Q ss_pred ----CCCCEEEEEEcccCCCCC-----------------CChhhHHHHHHHHHhhcc---cCceeEEEeccCCccChhhh
Q 008807 207 ----GANPIILVVTKVDLLPKG-----------------TDFNCVGDWVVEATTKKK---LNVLSVHLTSSKSLAGIVGV 262 (553)
Q Consensus 207 ----~~~pvIlVlNKiDLl~~~-----------------~~~~~~~~~~~~~~~~~~---l~~~~vi~iSAk~g~gi~~L 262 (553)
.+.|++||+||+||..+. .+.+...+|+.+.+.... -.....+.+||+++.+++.+
T Consensus 229 ~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~v 308 (327)
T 3ohm_A 229 YPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFV 308 (327)
T ss_dssp SGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHH
T ss_pred hhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHH
Confidence 357999999999986421 123444555544433211 11134688999999999998
Q ss_pred HHHHHHh
Q 008807 263 ASEIQKE 269 (553)
Q Consensus 263 l~~L~~~ 269 (553)
++.+.+.
T Consensus 309 F~~v~~~ 315 (327)
T 3ohm_A 309 FAAVKDT 315 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 345
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.28 E-value=0.00024 Score=66.34 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.2
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|.|.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 348999999999999999988764
No 346
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.28 E-value=0.0002 Score=66.46 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+++..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999875
No 347
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.26 E-value=0.00054 Score=69.05 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=36.5
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecCC----cEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLGG----GKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~~----~~liDTPGi~ 342 (553)
..+++++|.+|||||||+|++..... ....++||.+........++ ..++||||..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF---------------PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC---------------CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC---------------CcccCCcccceeEEEEEECCEEEEEEEEeCCCch
Confidence 45899999999999999999986421 12234466543332222222 2389999974
No 348
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.25 E-value=0.00022 Score=75.11 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=69.0
Q ss_pred EEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC---------hhhH---HHHHHHh-
Q 008807 140 RCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN---------GSFL---ARIRDLA- 206 (553)
Q Consensus 140 Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~---------~s~~---~~l~~~~- 206 (553)
.....+....++||+|-. .++........+++.||+|+|+++++ .++. ..+..+.
T Consensus 211 ~~~~~~v~l~iwDtaGQe------------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~ 278 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGGQR------------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 278 (402)
T ss_dssp EEEETTEEEEEEEECCSG------------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHT
T ss_pred EeecCCccceecccchhh------------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHh
Confidence 344444567789998853 33333444567899999999999831 1221 1222222
Q ss_pred ----CCCCEEEEEEcccCCCCCC----------------------------C---hhhHHHHHHHHHhhc------ccCc
Q 008807 207 ----GANPIILVVTKVDLLPKGT----------------------------D---FNCVGDWVVEATTKK------KLNV 245 (553)
Q Consensus 207 ----~~~pvIlVlNKiDLl~~~~----------------------------~---~~~~~~~~~~~~~~~------~l~~ 245 (553)
.+.|+|||+||+||..... . ......|+.+.+... .-..
T Consensus 279 ~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~ 358 (402)
T 1azs_C 279 NRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY 358 (402)
T ss_dssp CTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC
T ss_pred cccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc
Confidence 3578999999999843210 0 122333432222111 0011
Q ss_pred eeEEEeccCCccChhhhHHHHHH
Q 008807 246 LSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 246 ~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
..++.+||+++.||+.++..+.+
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~ 381 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRD 381 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHH
Confidence 34678999999999998887765
No 349
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.24 E-value=0.00011 Score=68.69 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.8
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..+++++|.+|||||||+|+|...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999999754
No 350
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.23 E-value=0.00013 Score=69.08 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 351
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.23 E-value=0.00041 Score=65.62 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=21.7
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999975
No 352
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.20 E-value=0.00047 Score=65.54 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.7
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 458999999999999999999875
No 353
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.19 E-value=0.00035 Score=71.87 Aligned_cols=109 Identities=12% Similarity=-0.006 Sum_probs=60.9
Q ss_pred cCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCCh--hhHHHHHHHhCCCCEEEEEEcccCC
Q 008807 144 LSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNG--SFLARIRDLAGANPIILVVTKVDLL 221 (553)
Q Consensus 144 l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~--s~~~~l~~~~~~~pvIlVlNKiDLl 221 (553)
.+....++||+|+. . + .. .+.+.+|++++|+|....+. .+...+. ..+.++|+||+|+.
T Consensus 146 ~~~~~iliDT~Gi~---~--~---~~-------~v~~~~d~vl~v~d~~~~~~~~~i~~~i~----~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVG---Q--S---ET-------AVADLTDFFLVLMLPGAGDELQGIKKGIF----ELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSS---S--C---HH-------HHHTTSSEEEEEECSCC------CCTTHH----HHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCC---c--c---hh-------hHHhhCCEEEEEEcCCCcccHHHHHHHHh----ccccEEEEEchhcc
Confidence 46678999998752 1 1 11 12358899999999764321 0111111 23557888999986
Q ss_pred CCCCChhhHHHHHHHHHhhccc---C-ceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 222 PKGTDFNCVGDWVVEATTKKKL---N-VLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l---~-~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
+.........+.+........- . ..+++++||+++.|+++|++.|.+...
T Consensus 207 ~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 207 DGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5321100011111111100010 0 256889999999999999999887543
No 354
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.18 E-value=0.00014 Score=75.44 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=64.0
Q ss_pred ccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCC---------hhhH---HHHHHHh-----CCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFN---------GSFL---ARIRDLA-----GAN 209 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~---------~s~~---~~l~~~~-----~~~ 209 (553)
...+.||||-..| +..-.....+++.+|+|+|+++++ .++. ..+..+. .+.
T Consensus 184 ~l~iwDtaGQe~~------------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 184 VYRLFDVGGQRNE------------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp EEEEEEECCSTTG------------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred eeEEEECCCchhh------------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 4678999885332 222334467899999999998321 1221 1222222 357
Q ss_pred CEEEEEEcccCCCCCC---C-------------------hhhHHHHHHHHHhhc---c------cCceeEEEeccCCccC
Q 008807 210 PIILVVTKVDLLPKGT---D-------------------FNCVGDWVVEATTKK---K------LNVLSVHLTSSKSLAG 258 (553)
Q Consensus 210 pvIlVlNKiDLl~~~~---~-------------------~~~~~~~~~~~~~~~---~------l~~~~vi~iSAk~g~g 258 (553)
|+|||+||+||..+.. . .+...+|+.+.+... . -....++.+||+++.|
T Consensus 252 piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~n 331 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKL 331 (354)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHH
T ss_pred eEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchh
Confidence 8999999999853210 0 122233332221110 0 1113467899999999
Q ss_pred hhhhHHHHHH
Q 008807 259 IVGVASEIQK 268 (553)
Q Consensus 259 i~~Ll~~L~~ 268 (553)
++++++.+.+
T Consensus 332 V~~vF~~v~~ 341 (354)
T 2xtz_A 332 VKKTFKLVDE 341 (354)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 355
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.16 E-value=0.00026 Score=65.39 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999863
No 356
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.16 E-value=8e-05 Score=76.70 Aligned_cols=25 Identities=40% Similarity=0.387 Sum_probs=22.1
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..+.++|.+|+|||||+|.|.+.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999864
No 357
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.12 E-value=0.0011 Score=72.70 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=45.6
Q ss_pred ccEEEecCCCCCccCCCccccHH--HHHHHHHHhhhcccEEEEEcccCCCC-hhhHHHHHHHhC--CCCEEEEEEcccCC
Q 008807 147 GHMITAVGGNGGYAGGKQFVSAD--ELREKLSHLRREKALIVKLVDIVDFN-GSFLARIRDLAG--ANPIILVVTKVDLL 221 (553)
Q Consensus 147 ~~~~~dTaG~vgf~~~~~~~l~e--~~~~~l~~~~~~adlIl~VVD~~d~~-~s~~~~l~~~~~--~~pvIlVlNKiDLl 221 (553)
+..++||+|... .......+ .|.......+.++|+||+|+|+.++. ......+...+. ..|+++|+||+|++
T Consensus 155 ~l~lIDTPG~~~---~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILS---GAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CEEEEECcCCCC---cchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 578999987531 10101111 14555666677899999999998742 222222222222 46899999999998
Q ss_pred CCC
Q 008807 222 PKG 224 (553)
Q Consensus 222 ~~~ 224 (553)
+..
T Consensus 232 ~~~ 234 (550)
T 2qpt_A 232 ETQ 234 (550)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 358
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.12 E-value=0.00038 Score=66.09 Aligned_cols=83 Identities=11% Similarity=-0.025 Sum_probs=53.4
Q ss_pred cccEEEEEcccCCCChhhHHHHHHHhCCCCEEEEEEcccCCCCC-CChhhHHHHHHHHHhhcccCceeEEEeccCCccCh
Q 008807 181 EKALIVKLVDIVDFNGSFLARIRDLAGANPIILVVTKVDLLPKG-TDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGI 259 (553)
Q Consensus 181 ~adlIl~VVD~~d~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~-~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi 259 (553)
.++.+++|+|+.+.......... . ...|.++|+||+|+.+.. .....+.+++.+ .. ....++.+||++|.|+
T Consensus 129 ~~~~~i~vvd~~~~~~~~~~~~~-~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~i~~~Sa~~g~gi 201 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDDVVEKHPE-I-FRVADLIVINKVALAEAVGADVEKMKADAKL----IN-PRAKIIEMDLKTGKGF 201 (221)
T ss_dssp SCSEEEEEEEGGGCTTHHHHCHH-H-HHTCSEEEEECGGGHHHHTCCHHHHHHHHHH----HC-TTSEEEECBTTTTBTH
T ss_pred ccCcEEEEEeCCCcchhhhhhhh-h-hhcCCEEEEecccCCcchhhHHHHHHHHHHH----hC-CCCeEEEeecCCCCCH
Confidence 45778999999876533222111 1 246889999999996431 233333343321 11 1246889999999999
Q ss_pred hhhHHHHHHhh
Q 008807 260 VGVASEIQKEK 270 (553)
Q Consensus 260 ~~Ll~~L~~~~ 270 (553)
++|++.|.+..
T Consensus 202 ~~l~~~l~~~~ 212 (221)
T 2wsm_A 202 EEWIDFLRGIL 212 (221)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 359
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.11 E-value=0.00037 Score=74.31 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.4
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
-|.|+|.+|+|||||+|.|++.
T Consensus 69 vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5789999999999999999976
No 360
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.11 E-value=0.00044 Score=71.99 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=42.4
Q ss_pred CCCEEEEEEccc--CCCC--CCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhhcccceEEeccCCC
Q 008807 208 ANPIILVVTKVD--LLPK--GTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEKKGRDVYILGSANV 283 (553)
Q Consensus 208 ~~pvIlVlNKiD--Ll~~--~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~~g~~v~ivG~~NV 283 (553)
.+|+++|.||.| +... ......+.+|. ... + ..++.+||+...++.+|.+.-+... +--.|....
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a----~~~--g-~~vv~iSAk~E~el~eL~~~~~~~~----l~~~g~~~~ 269 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKA----LEE--G-AEVVVVSARLEAELAELSGEEAREL----LAAYGLQES 269 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHH----HHH--T-CEEEEECHHHHHHHHTSCHHHHHHH----HHHTTCCSC
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHH----HHc--C-CeEEEeechhHHHHHHhchHHHHHH----HHHhCcchh
Confidence 379999999998 3322 11122233332 111 2 4688999998888777654422110 001255556
Q ss_pred ChhHHHHHHHhh
Q 008807 284 GKSAFINALLKK 295 (553)
Q Consensus 284 GKSTLIN~L~~~ 295 (553)
|=..||++....
T Consensus 270 gl~~li~~~~~~ 281 (368)
T 2dby_A 270 GLQRLARAGYRA 281 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 656667665544
No 361
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.09 E-value=0.0007 Score=63.27 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999975
No 362
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.07 E-value=0.0002 Score=78.14 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
-++++|+|.+|||||||+|+|+..
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~ 36 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLF 36 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh
Confidence 458999999999999999999854
No 363
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.07 E-value=0.00099 Score=61.99 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++++|.+|||||||+|.|.+.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999999875
No 364
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.06 E-value=0.00031 Score=72.90 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC
Confidence 37899999999999999999865
No 365
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.05 E-value=0.00017 Score=73.88 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.3
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++|+|.+|||||||+|+|.+.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSS
T ss_pred cceEEEECCCCccHHHHHHHHhCC
Confidence 347999999999999999999864
No 366
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.03 E-value=0.00015 Score=79.13 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=38.9
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee---cCCcEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF---LGGGKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~---~~~~~liDTPGi~~~ 344 (553)
..+.++|.+|+|||||+|+|++... .....||+|.+....... .....++||||....
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~--------------~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f 65 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQV--------------AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAF 65 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHH--------------HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc--------------ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHH
Confidence 4789999999999999999987521 112357788763222211 123569999996543
No 367
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.08 E-value=0.0001 Score=69.26 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=21.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|||||||+|+|...
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 458999999999999999999864
No 368
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.01 E-value=0.00058 Score=69.85 Aligned_cols=112 Identities=17% Similarity=0.107 Sum_probs=64.4
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHH-------HHHhCCCCEEEEEEcc
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARI-------RDLAGANPIILVVTKV 218 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l-------~~~~~~~pvIlVlNKi 218 (553)
....++||||-..|... . + .......+++.+|+|+|+++........+ .....+.|+++|.||+
T Consensus 46 v~LqIWDTAGQErf~~~---~----l--~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~ 116 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEP---S----Y--DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKV 116 (331)
T ss_dssp SCEEEEECCSCSSSCCC---S----H--HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCC
T ss_pred EEEEEEECCCchhccch---h----h--hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECc
Confidence 46789999987544210 0 0 12233568999999999998521212222 1222467999999999
Q ss_pred cCCCCCCCh---hhHHHHHHHHHhhcc---cCceeEEEeccCCccChhhhHHHHHH
Q 008807 219 DLLPKGTDF---NCVGDWVVEATTKKK---LNVLSVHLTSSKSLAGIVGVASEIQK 268 (553)
Q Consensus 219 DLl~~~~~~---~~~~~~~~~~~~~~~---l~~~~vi~iSAk~g~gi~~Ll~~L~~ 268 (553)
||.+++... ..+.....+.+...+ .+ ...+.+||++ .++.+....|.+
T Consensus 117 DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~-i~f~eTSAkd-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 117 DGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ-VSFYLTSIFD-HSIYEAFSRIVQ 170 (331)
T ss_dssp CSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC-EEEECCCSSS-SHHHHHHHHHHT
T ss_pred ccCchhhhhhHHHHhhHHHHHHHHhhcccccC-ceEEEeccCC-CcHHHHHHHHHH
Confidence 998643111 111111111122221 23 4577899987 578887777764
No 369
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.99 E-value=0.00026 Score=65.31 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.5
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|.|.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999888764
No 370
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.96 E-value=0.00073 Score=71.51 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=39.5
Q ss_pred cccc--eEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC----CcEEEEcCCccC
Q 008807 271 KGRD--VYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG----GGKLYDTPGVHL 343 (553)
Q Consensus 271 ~g~~--v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~----~~~liDTPGi~~ 343 (553)
+|.. ++|+|.+|+|||||||.|.+.... +.......|++++..+.+..... ...++||||+..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l~----------g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFE----------GEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSCC-----------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCcccc----------CCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 4556 899999999999999999986311 11112224667765444433222 346999999864
No 371
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.96 E-value=0.00079 Score=75.15 Aligned_cols=73 Identities=11% Similarity=-0.008 Sum_probs=48.4
Q ss_pred EEEecCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEc
Q 008807 140 RCRLLSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTK 217 (553)
Q Consensus 140 Rc~~l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNK 217 (553)
.+.+.++...++||+|-+.|. .....++.-+|..|.|||+.+--..--..+...+ .+.|.|+++||
T Consensus 61 ~~~~~~~~iNlIDTPGH~DF~------------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INK 128 (638)
T 3j25_A 61 SFQWENTKVNIIDTPGHMDFL------------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINK 128 (638)
T ss_dssp CCBCSSCBCCCEECCCSSSTH------------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEE
T ss_pred EEEECCEEEEEEECCCcHHHH------------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEec
Confidence 345566778899999875432 2344456678999999999875432222222222 36788999999
Q ss_pred ccCCCCC
Q 008807 218 VDLLPKG 224 (553)
Q Consensus 218 iDLl~~~ 224 (553)
+|....+
T Consensus 129 mDr~~a~ 135 (638)
T 3j25_A 129 IDQNGID 135 (638)
T ss_dssp CCSSSCC
T ss_pred cccccCC
Confidence 9976443
No 372
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.95 E-value=0.00063 Score=71.41 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=39.9
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCC-----hhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERD-----PAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~-----~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~ 342 (553)
.++.++|.+|+|||||+|+|++...... ..... .........|+|.+...+..... ...|+||||..
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~---d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEI---DNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHH---HSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhh---hcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 4799999999999999999997421000 00000 01111224678877544433222 34699999974
No 373
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.94 E-value=0.00029 Score=74.12 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=40.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCC------hhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERD------PAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHL 343 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~------~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~ 343 (553)
..++.++|.+|+|||||+|+|++....+. ..... ........+|+|.+...+..... ...|+||||...
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~---d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHH---SCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhc---cCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 45899999999999999999997411000 00000 00001113577776544443222 346999999754
No 374
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.92 E-value=0.00042 Score=72.23 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=34.4
Q ss_pred ceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEeecC--CcEEEEcCCccCC
Q 008807 274 DVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAFLG--GGKLYDTPGVHLH 344 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~~--~~~liDTPGi~~~ 344 (553)
++.++|.+|+|||||+|+|+. .|+|.+......... ...|+||||....
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~----------------------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f 73 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK----------------------KGTSSDITMYNNDKEGRNMVFVDAHSYPKT 73 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE----------------------EEEESSSEEEEECSSSSEEEEEECTTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHh----------------------CCEEEEeeEEEEecCCeEEEEEECCChHHH
Confidence 799999999999999999982 245554333222112 2469999998644
No 375
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.89 E-value=0.001 Score=70.68 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred cceEEeccCCCChhHHHHHHHhhh
Q 008807 273 RDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
.+++++|.+|+|||||+|+|+...
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCHHHHHHHHHhhc
Confidence 479999999999999999999763
No 376
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.88 E-value=0.00076 Score=72.27 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.3
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|+|||||+|+|+..
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999975
No 377
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.87 E-value=0.00079 Score=75.86 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=35.2
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCC------CCCceeecEEEEeecCC--cEEEEcCCccCC
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSA------VPGTTLGPIQIDAFLGG--GKLYDTPGVHLH 344 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~------~PGTT~~~i~i~~~~~~--~~liDTPGi~~~ 344 (553)
++++++|.+|+|||||+|+|+.....-....... ...++++ .+|+|...........+ ..|+||||....
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~--~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETH--EGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccc--CCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 4799999999999999999996432211000000 0011222 35677654333222222 469999998654
No 378
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.87 E-value=0.00063 Score=67.71 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=21.2
Q ss_pred ceEEeccCCCChhHHHHHHHhhh
Q 008807 274 DVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
+++++|.+|+|||||||.|.+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 379
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.83 E-value=0.0012 Score=63.34 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||||++...
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCcCHHHHHHHHHhC
Confidence 47999999999999999999864
No 380
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.82 E-value=0.00048 Score=74.51 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=38.1
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecEEEEee--cCCcEEEEcCCccCC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPIQIDAF--LGGGKLYDTPGVHLH 344 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~--~~~~~liDTPGi~~~ 344 (553)
...+.++|.+|+|||||+|+|++.... .+..+|+|.+....... .....++||||....
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~--------------~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f 64 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVA--------------SGEAGGITQHIGAYHVETENGMITFLDTPGHAAF 64 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHS--------------BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCc--------------cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHH
Confidence 347999999999999999999874211 12235666542221111 123569999997544
No 381
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.81 E-value=0.00073 Score=73.71 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..+++++|.+|+|||||+|+|+..
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCChHHHHHHHHHhh
Confidence 3468999999999999999999964
No 382
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.76 E-value=0.00065 Score=74.13 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=20.7
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+++++|.+|||||||+|+|.+.
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999975
No 383
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.75 E-value=0.00052 Score=74.04 Aligned_cols=64 Identities=20% Similarity=0.155 Sum_probs=31.7
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeecE--EEEeecCCcEEEEcCCcc
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGPI--QIDAFLGGGKLYDTPGVH 342 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~i--~i~~~~~~~~liDTPGi~ 342 (553)
..++.++|.+|+|||||+|+|.+..... .. .+...+..+|+|.+.. .+..-.....|+||||..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~--~~-----d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~ 84 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTS--AH-----DKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA 84 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC---------------------------CCCEEEETTEEEEECCCSSHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCccc--cc-----ccccccccCccEEecceEEEEECCEEEEEEECCChH
Confidence 3589999999999999999998753100 00 1112344578887532 222111124699999963
No 384
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.71 E-value=0.00099 Score=70.18 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.++.++|.+|+|||||+|+|.+.
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~ 33 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGV 33 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 385
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.66 E-value=0.0015 Score=75.20 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=22.0
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
-++++|+|.+|+|||||+|+|+..
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999976
No 386
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.62 E-value=0.00079 Score=69.57 Aligned_cols=23 Identities=43% Similarity=0.414 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+.++|.+|||||||+|+|...
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999865
No 387
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.60 E-value=0.0024 Score=67.34 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+.++|.+|+|||||||+|.+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999984
No 388
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.59 E-value=0.00081 Score=71.48 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.7
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+++++|.+|+|||||+|+|+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHH
Confidence 357999999999999999999975
No 389
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.58 E-value=0.0099 Score=67.08 Aligned_cols=66 Identities=14% Similarity=-0.033 Sum_probs=44.7
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHh--CCCCEEEEEEcccCCCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLA--GANPIILVVTKVDLLPK 223 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~--~~~pvIlVlNKiDLl~~ 223 (553)
|...++||+|-+.|. ...+.++.-+|-+|.|||+.+--...-..+.+.+ .+.|.++|+||+|....
T Consensus 85 ~~iNlIDTPGHvDF~------------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 85 YRVNVIDTPGHVDFT------------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp EEEEEECCCSCTTCH------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred EEEEEEeCCCCcccH------------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 457799999876443 2334455678999999999875433333333222 47899999999998644
No 390
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.56 E-value=0.0016 Score=68.56 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.3
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++.++|.+|+|||||+|+|.+.
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~ 31 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGV 31 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSC
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Confidence 347999999999999999999864
No 391
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.54 E-value=0.0012 Score=67.72 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.8
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..+.++|.+|+|||||+|+|...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3557899999999999999999864
No 392
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.44 E-value=0.0012 Score=69.33 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=21.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++.++|.+|+|||||+|+|.+.
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCc
Confidence 348999999999999999999874
No 393
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.42 E-value=0.0018 Score=61.43 Aligned_cols=42 Identities=31% Similarity=0.446 Sum_probs=31.9
Q ss_pred hcccceEEeccCCCChhHHHHHHHhhhCCCChhhhhhhhcCCccCCCCCceeec
Q 008807 270 KKGRDVYILGSANVGKSAFINALLKKMGERDPAAAMAQKYRPIQSAVPGTTLGP 323 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~~~~~k~~~~~~~~~~~~~~S~~PGTT~~~ 323 (553)
.+++.++|+|.+|||||||+|.|++... ......+++|||.+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~------------~~~~~~vs~TTR~p 58 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP------------EKFVYPVPYTTRPP 58 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT------------TTEECCCCEECSCC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC------------ccEEeeecccccCC
Confidence 3577899999999999999999997521 01345567899864
No 394
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.42 E-value=0.0046 Score=64.08 Aligned_cols=88 Identities=11% Similarity=0.008 Sum_probs=46.9
Q ss_pred ccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEec-----------------CCccEEEecCC
Q 008807 93 KVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLL-----------------SHGHMITAVGG 155 (553)
Q Consensus 93 ~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l-----------------~~~~~~~dTaG 155 (553)
++.++|..++|++++|+....... .+.+-.|.|. ++..+.+... .....++||+|
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p~tTi-------~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTI-------EPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAG 75 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC-------CCCCC-------CCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceE-------CceEEEEecCCcccceeeeeecccceeeeEEEEEECCC
Confidence 567889999999999987654321 1111112222 2222222222 14578999998
Q ss_pred CCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCC
Q 008807 156 NGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVD 193 (553)
Q Consensus 156 ~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d 193 (553)
...+..... .+...| +. .+.++|+|++|+|+++
T Consensus 76 l~~~a~~~~-gl~~~f---l~-~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 76 LVAGASKGE-GLGNKF---LA-NIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCTTHHHHG-GGTCCH---HH-HHHTCSEEEEEEECSC
T ss_pred Ccccccccc-hHHHHH---HH-HHHhcCeEEEEEecCC
Confidence 753211000 011122 22 3468999999999985
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.00071 Score=64.17 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.0
Q ss_pred ccceEEeccCCCChhHHHHHHHhhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
...++++|.+|||||||+|+|+...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999763
No 396
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.29 E-value=0.0036 Score=63.55 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=54.6
Q ss_pred HHHHhC-CCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh----------
Q 008807 202 IRDLAG-ANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK---------- 270 (553)
Q Consensus 202 l~~~~~-~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~---------- 270 (553)
+..++. ..| .+|++|.|..+++ +.+..... + ..++.+++.+...+..|...|...+
T Consensus 73 ler~l~~~~P-~IIltrg~~~pee---------lie~A~~~--~-IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~ 139 (314)
T 1ko7_A 73 MRKLCRPETP-AIIVTRDLEPPEE---------LIEAAKEH--E-TPLITSKIATTQLMSRLTTFLEHELARTTSLHGVL 139 (314)
T ss_dssp HHHHCCTTCC-CEEECTTCCCCHH---------HHHHHHHT--T-CCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEE
T ss_pred HHHHhcCCCC-EEEEeCCCCCCHH---------HHHHHHHC--C-CeEEEECCchhHHHHHHHHHHHHhhccceeeeEEE
Confidence 334433 455 5688999986432 11222222 2 4567777777777777777776532
Q ss_pred ---cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 ---KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ---~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.|..++++|.+|+||||+.+.|+..
T Consensus 140 v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 140 VDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3668999999999999999999975
No 397
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.25 E-value=0.013 Score=56.02 Aligned_cols=97 Identities=9% Similarity=0.087 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhcccEEEEEcccCCCCh-hhHHHH---HHHh------CCCCEEEEEEcc-cCCCCCCChhhHHHHHHHHH
Q 008807 170 ELREKLSHLRREKALIVKLVDIVDFNG-SFLARI---RDLA------GANPIILVVTKV-DLLPKGTDFNCVGDWVVEAT 238 (553)
Q Consensus 170 ~~~~~l~~~~~~adlIl~VVD~~d~~~-s~~~~l---~~~~------~~~pvIlVlNKi-DLl~~~~~~~~~~~~~~~~~ 238 (553)
.++..-.++..+.|.||+|||..|... ....++ ..++ .+.|+++..||. |+ +.......+.+.+
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl-p~Ams~~EI~e~L---- 188 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD-VKRMPCFYLAHEL---- 188 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT-SCBCCHHHHHHHT----
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc-cCCCCHHHHHHHc----
Confidence 344444556778999999999988631 122233 3322 346888888996 66 4433333333322
Q ss_pred hhccc-CceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 239 TKKKL-NVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 239 ~~~~l-~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
.-..+ ....|..+||++|.|+.+-++.|.+..+
T Consensus 189 ~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 189 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 11111 2345889999999999988888765443
No 398
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.25 E-value=0.0019 Score=69.35 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.5
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++.++|.+|+|||||+|+|+..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~ 66 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFL 66 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHH
T ss_pred eeEEEEEECCCCCHHHHHHHHHHH
Confidence 348999999999999999999864
No 399
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.23 E-value=0.0032 Score=70.90 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.++.++|.+|+|||||+|+|+..
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~ 35 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYY 35 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999964
No 400
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.00 E-value=0.004 Score=62.78 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=19.7
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||||.|.+.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999864
No 401
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.99 E-value=0.0041 Score=68.72 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+.++|.+|+|||||+|+|++.
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~ 28 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGS 28 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHhcc
Confidence 47999999999999999999975
No 402
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.97 E-value=0.0039 Score=59.19 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCCEEEEEEcccCCCCC-CChhhHHHHHHHHHhhcccCceeEEEeccCCccChhhhHHHHHHhh
Q 008807 208 ANPIILVVTKVDLLPKG-TDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVGVASEIQKEK 270 (553)
Q Consensus 208 ~~pvIlVlNKiDLl~~~-~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~Ll~~L~~~~ 270 (553)
..|.++|+||+|+.+.. .....+.+++.. .. ....++.+||++|.|+++|++.|.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKR----IN-PDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHH----HC-TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHH----hC-CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 46789999999997532 123333333321 11 124688999999999999998886543
No 403
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.95 E-value=0.0055 Score=64.75 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.9
Q ss_pred ceEEeccCCCChhHHHHHHHhhh
Q 008807 274 DVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
+++++|.+|||||||||.|.+..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999999753
No 404
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.83 E-value=0.0056 Score=71.88 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=33.5
Q ss_pred cceEEeccCCCChhHHHHHHHhhhCCC--ChhhhhhhhcCCccCCCCCceeecEEEEeec--CCcEEEEcCCcc
Q 008807 273 RDVYILGSANVGKSAFINALLKKMGER--DPAAAMAQKYRPIQSAVPGTTLGPIQIDAFL--GGGKLYDTPGVH 342 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~~~k--~~~~~~~~~~~~~~S~~PGTT~~~i~i~~~~--~~~~liDTPGi~ 342 (553)
.++.++|.+|+|||||+|+|.+..... ........-.........|+|.+...+..-. ....|+||||..
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 479999999999999999998742100 0000000000011223567887643333222 234699999964
No 405
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=95.67 E-value=0.0046 Score=68.33 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=17.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++.++|.+|+|||||+|+|+..
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~ 27 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQI 27 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999975
No 406
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.66 E-value=0.0052 Score=70.70 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=43.1
Q ss_pred CccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHH-HHH-hCCCCEEEEEEcccCCC
Q 008807 146 HGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARI-RDL-AGANPIILVVTKVDLLP 222 (553)
Q Consensus 146 ~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l-~~~-~~~~pvIlVlNKiDLl~ 222 (553)
+...++||+|...|. .....++..+|.+|+|+|+.+........+ ... ..+.|+++|+||+|+..
T Consensus 98 ~~i~liDTPG~~df~------------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS------------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCSSC------------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchhhH------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 456799999875432 223444568999999999987542222221 111 24689999999999863
No 407
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.65 E-value=0.011 Score=66.54 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++++|+|.+|+|||||+++|+..
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~ 33 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFY 33 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 408
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=95.63 E-value=0.0025 Score=62.41 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=20.7
Q ss_pred cceEEeccC---------CCChhHHHHHHHh
Q 008807 273 RDVYILGSA---------NVGKSAFINALLK 294 (553)
Q Consensus 273 ~~v~ivG~~---------NVGKSTLIN~L~~ 294 (553)
.+++++|.+ |||||||+|+|.+
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 479999999 9999999999997
No 409
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.60 E-value=0.0053 Score=67.84 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=19.2
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++.++|.+|+|||||+|+|+..
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~ 29 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEY 29 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999975
No 410
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.58 E-value=0.012 Score=65.78 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++.++.++|.+|+|||||+|+|+..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCChHHHHHHHHHHh
Confidence 3568999999999999999999965
No 411
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.43 E-value=0.0073 Score=64.12 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++++|.+||||||++++|...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 412
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.36 E-value=0.0056 Score=66.21 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=61.9
Q ss_pred cCCccEEEecCCCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCCCChhhHHHHHHHhCCCCE-EEEEEcccCCC
Q 008807 144 LSHGHMITAVGGNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVDFNGSFLARIRDLAGANPI-ILVVTKVDLLP 222 (553)
Q Consensus 144 l~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d~~~s~~~~l~~~~~~~pv-IlVlNKiDLl~ 222 (553)
.++...++||+|... . ...+.+++..... ++ .+|.+++|||+..... .......+....|+ ++|+||+|...
T Consensus 182 ~~~DvvIIDTpG~~~---~-~~~l~~el~~~~~-~i-~pd~vllVvDa~~g~~-~~~~a~~~~~~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 182 ENFEIIIVDTSGRHK---Q-EDSLFEEMLQVAN-AI-QPDNIVYVMDASIGQA-CEAQAKAFKDKVDVASVIVTKLDGHA 254 (504)
T ss_dssp TTCCEEEEEECCCCT---T-CHHHHHHHHHHHH-HH-CCSEEEEEEETTCCTT-HHHHHHHHHHHHCCCCEEEECTTSCC
T ss_pred CCCcEEEEeCCCCcc---c-chhHHHHHHHHHh-hh-cCceEEEEEecccccc-HHHHHHHHHhhcCceEEEEeCCcccc
Confidence 345678999987631 1 1112233333222 23 7899999999986432 22222211112464 88999999875
Q ss_pred CCCChhhHHHHHHHHHhh--------ccc----CceeEEEeccCCccC-hhhhHHHHHHh
Q 008807 223 KGTDFNCVGDWVVEATTK--------KKL----NVLSVHLTSSKSLAG-IVGVASEIQKE 269 (553)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~--------~~l----~~~~vi~iSAk~g~g-i~~Ll~~L~~~ 269 (553)
... . ..+.. ..+.. +.+ .+...+++|+..|.| +++|++.+.+.
T Consensus 255 ~~g--~-~l~~~-~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGG--G-ALSAV-AATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCT--H-HHHHH-HHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred chH--H-HHHHH-HHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 432 1 11111 11100 000 112345679999999 99999888754
No 413
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.35 E-value=0.0033 Score=68.07 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.7
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
...++|+|.+||||||++|+|...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999853
No 414
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.20 E-value=0.0096 Score=56.16 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=23.0
Q ss_pred hhcccceEEeccCCCChhHHHHHHHhh
Q 008807 269 EKKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 269 ~~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+|..+.++|.+|+|||||+|.|.+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 346778999999999999999999875
No 415
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.18 E-value=0.092 Score=52.54 Aligned_cols=95 Identities=11% Similarity=0.100 Sum_probs=58.3
Q ss_pred HHHHHHhhhcccEEEEEcccCCCCh-hhH---HHHHHH------hCCCCEEEEEEcc-cCCCCCCChhhHHHHHHHHHhh
Q 008807 172 REKLSHLRREKALIVKLVDIVDFNG-SFL---ARIRDL------AGANPIILVVTKV-DLLPKGTDFNCVGDWVVEATTK 240 (553)
Q Consensus 172 ~~~l~~~~~~adlIl~VVD~~d~~~-s~~---~~l~~~------~~~~pvIlVlNKi-DLl~~~~~~~~~~~~~~~~~~~ 240 (553)
+..-.++.++.|.||+|||..|... ... .++..+ ..+.|+++..||. |+ +.......+.+.+ .-
T Consensus 201 RplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDl-p~Ams~~EI~e~L----~L 275 (312)
T 3l2o_B 201 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD-VKRMPCFYLAHEL----HL 275 (312)
T ss_dssp CHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTT-SCBCCHHHHHHHT----TG
T ss_pred HHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccc-cCCCCHHHHHHHc----CC
Confidence 3334556678999999999998641 111 112111 2467888888974 77 3333333333321 11
Q ss_pred ccc-CceeEEEeccCCccChhhhHHHHHHhhc
Q 008807 241 KKL-NVLSVHLTSSKSLAGIVGVASEIQKEKK 271 (553)
Q Consensus 241 ~~l-~~~~vi~iSAk~g~gi~~Ll~~L~~~~~ 271 (553)
..+ ....|..+||.+|.|+.+-++.|.+..+
T Consensus 276 ~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 276 NLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred ccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 111 2345889999999999998888876544
No 416
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.12 E-value=0.047 Score=54.87 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=42.6
Q ss_pred EEEEEcccC-C-CChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccChhh
Q 008807 184 LIVKLVDIV-D-FNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGIVG 261 (553)
Q Consensus 184 lIl~VVD~~-d-~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi~~ 261 (553)
+++++++.+ . ++..-...+..+....++++|+||+|+..... .....+...+.+.. .+ ..++.+||+++ |+++
T Consensus 129 ~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e-~~~~~~~~~~~~~~--~~-~~~~e~Sa~~~-~v~e 203 (301)
T 2qnr_A 129 CCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKE-RERLKKRILDEIEE--HN-IKIYHLPDAES-DEDE 203 (301)
T ss_dssp EEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHH-HHHHHHHHHHHHHH--TT-CCCCCCC---------
T ss_pred heeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHH-HHHHHHHHHHHHHH--cC-CeEEecCCccc-cccH
Confidence 355555532 2 43322333444434568999999999975321 11111111111222 23 35678999999 9999
Q ss_pred hHHHHHHhhc-ccceEEeccC
Q 008807 262 VASEIQKEKK-GRDVYILGSA 281 (553)
Q Consensus 262 Ll~~L~~~~~-g~~v~ivG~~ 281 (553)
++..+.+.+. .....++|..
T Consensus 204 ~f~~l~~~i~~~~p~avigs~ 224 (301)
T 2qnr_A 204 DFKEQTRLLKASIPFSVVGSN 224 (301)
T ss_dssp -CHHHHHHHHTTCSEECCCCC
T ss_pred HHHHHHHHhhcCCCceEECCC
Confidence 8877665432 3356666653
No 417
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.06 E-value=0.011 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.5
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..++++|.+|+|||||+|.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999975
No 418
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.93 E-value=0.012 Score=55.17 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=21.5
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..++|+|.+|+|||||+|.|.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999875
No 419
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.91 E-value=0.014 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.7
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+-++|+|.+||||+||++.|+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999976
No 420
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.35 E-value=0.016 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..+.|+|.+|+|||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999875
No 421
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.35 E-value=0.031 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
...++++|.+|||||||+|+|+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999976
No 422
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.20 E-value=0.049 Score=56.94 Aligned_cols=90 Identities=12% Similarity=0.008 Sum_probs=50.3
Q ss_pred cccccCCCcccccCccccccCCCCCcccCCchhhHhhhccCccceEEEEEEecC-----------------CccEEEecC
Q 008807 92 LKVNSAVASCYGCGAPLQTSESDAPGYVDPDTYELKKKHHQFKTVLCGRCRLLS-----------------HGHMITAVG 154 (553)
Q Consensus 92 ~~~~~~~~~C~GCG~~LQ~~d~~~~GY~~~~~f~t~~~~~~~rd~ic~Rc~~l~-----------------~~~~~~dTa 154 (553)
..+..+|..++|++++|+........-+.+-.|.|. ++..+++...+ ....++||+
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi-------~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI-------DPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCC-------CTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceee-------cceeeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence 478889999999999998765421111111122222 33334444332 235788998
Q ss_pred CCCCccCCCccccHHHHHHHHHHhhhcccEEEEEcccCC
Q 008807 155 GNGGYAGGKQFVSADELREKLSHLRREKALIVKLVDIVD 193 (553)
Q Consensus 155 G~vgf~~~~~~~l~e~~~~~l~~~~~~adlIl~VVD~~d 193 (553)
|.+..... ...+...|. ..+.++|.|++|+|+++
T Consensus 94 Gl~~~~s~-~e~L~~~fl----~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 94 GLTKGAST-GVGLGNAFL----SHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GGCCCCCS-SSSSCHHHH----HHHTTCSEEEEEEECCC
T ss_pred ccccCCcH-HHHHHHHHH----HHHHHHHHHHHHHhccc
Confidence 76432211 111223332 23457899999999863
No 423
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.90 E-value=0.03 Score=53.39 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.9
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..++|+|.+|+|||||++.|.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5778999999999999999999975
No 424
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.89 E-value=0.029 Score=53.72 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.8
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..++++|.+|+|||||++.|.+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 5678999999999999999999986
No 425
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.67 E-value=0.036 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.6
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..++|+|.||||||||.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5668999999999999999999875
No 426
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.64 E-value=0.034 Score=54.82 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.8
Q ss_pred hhcccceEEeccCCCChhHHHHHHHhh
Q 008807 269 EKKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 269 ~~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++..++++|.+|+|||||++.|.+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 346778999999999999999999875
No 427
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=93.54 E-value=0.071 Score=54.33 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.0
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++++|.+|||||||++.+.+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~ 22 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN 22 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC
T ss_pred CEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999987654
No 428
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.51 E-value=0.04 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+.++++|.+|+|||||++.|.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45789999999999999999975
No 429
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.49 E-value=0.039 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..++++|.+|+|||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567899999999999999999875
No 430
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.32 E-value=0.037 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.1
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..++++|.+|+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4667999999999999999999864
No 431
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=93.27 E-value=0.071 Score=58.21 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.2
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+-+++.|+|...+|||||.-+|+-.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~ 54 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLF 54 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHh
Confidence 4569999999999999999999854
No 432
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.98 E-value=0.051 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++.-++++|.+|+|||||++.|.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4567899999999999999999875
No 433
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.97 E-value=0.051 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.655 Sum_probs=20.7
Q ss_pred ceEEeccCCCChhHHHHHHHhhh
Q 008807 274 DVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
.+.++|.+|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999863
No 434
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.68 E-value=0.076 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=23.2
Q ss_pred hcccceEEeccCCCChhHHHHHHHhh
Q 008807 270 KKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+|..+.++|.+|+|||||++.|.+.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999874
No 435
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.67 E-value=0.059 Score=54.40 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.0
Q ss_pred hcccceEEeccCCCChhHHHHHHHhhh
Q 008807 270 KKGRDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
.+|..++|+|.+|+|||||++.|.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 467789999999999999999999864
No 436
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.64 E-value=0.1 Score=54.99 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=36.5
Q ss_pred ccEEEEEcccC-C-CChhhHHHHHHHhCCCCEEEEEEcccCCCCCCChhhHHHHHHHHHhhcccCceeEEEeccCCccCh
Q 008807 182 KALIVKLVDIV-D-FNGSFLARIRDLAGANPIILVVTKVDLLPKGTDFNCVGDWVVEATTKKKLNVLSVHLTSSKSLAGI 259 (553)
Q Consensus 182 adlIl~VVD~~-d-~~~s~~~~l~~~~~~~pvIlVlNKiDLl~~~~~~~~~~~~~~~~~~~~~l~~~~vi~iSAk~g~gi 259 (553)
+++||++++.+ . ++..-...+..+....++|+|+||+|++.... .....+.+.+.+...+ ..++.+||+++.++
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~e-v~~~k~~i~~~~~~~~---i~~~~~sa~~~~~v 214 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEE-CQQFKKQIMKEIQEHK---IKIYEFPETDDEEE 214 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHH-HHHHHHHHHHHHHHHT---CCCCCCC-------
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHH-HHHHHHHHHHHHHHcC---CeEEeCCCCCCcCH
Confidence 44566666653 2 32221223333335688999999999985431 1111122222222222 34677899999988
Q ss_pred hhhHHHHHHhhcccceEEecc
Q 008807 260 VGVASEIQKEKKGRDVYILGS 280 (553)
Q Consensus 260 ~~Ll~~L~~~~~g~~v~ivG~ 280 (553)
+++...+.+.. ...++|.
T Consensus 215 ~~~~~~l~~~i---Pfavv~s 232 (418)
T 2qag_C 215 NKLVKKIKDRL---PLAVVGS 232 (418)
T ss_dssp ----------C---CEEECC-
T ss_pred HHHHHHHHhhC---Ccceeec
Confidence 87666655433 2445554
No 437
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.55 E-value=0.064 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..++++|.+|+|||||++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4667899999999999999999875
No 438
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.51 E-value=0.058 Score=52.16 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4668999999999999999999874
No 439
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.49 E-value=0.16 Score=53.63 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=40.3
Q ss_pred CCccEEEecCCCCCccCCCccccHHHHHHHHHHhh--hcccEEEEEcccCCCChhhHHHHHHHhCCC-C-EEEEEEcccC
Q 008807 145 SHGHMITAVGGNGGYAGGKQFVSADELREKLSHLR--REKALIVKLVDIVDFNGSFLARIRDLAGAN-P-IILVVTKVDL 220 (553)
Q Consensus 145 ~~~~~~~dTaG~vgf~~~~~~~l~e~~~~~l~~~~--~~adlIl~VVD~~d~~~s~~~~l~~~~~~~-p-vIlVlNKiDL 220 (553)
++...++||+|... ....+.+.+..+. ..+|.+++|+|+.... .....+...-... + ..+|+||+|.
T Consensus 180 ~~D~vIIDT~G~~~--------~~~~l~~~l~~i~~~~~~d~vllVvda~~g~-~~~~~~~~~~~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 180 KADVLIIDTAGRHK--------EEKGLLEEMKQIKEITNPDEIILVIDGTIGQ-QAGIQAKAFKEAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SCSEEEEECCCSCS--------SHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG-GHHHHHHHHHTTSCSCEEEEEECSSS
T ss_pred CCCEEEEcCCCCcc--------ccHHHHHHHHHHHHHhcCcceeEEeeccccH-HHHHHHHHHhhcccCCeEEEEeCCCC
Confidence 45678999987531 1223333333222 2689999999987532 2222222222234 5 7899999998
Q ss_pred CC
Q 008807 221 LP 222 (553)
Q Consensus 221 l~ 222 (553)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 440
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.43 E-value=0.092 Score=54.14 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=26.8
Q ss_pred ChhhhHHHHHHhhcccceEEeccCCCChhHHHHHHHhh
Q 008807 258 GIVGVASEIQKEKKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 258 gi~~Ll~~L~~~~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
|+.+.+..+. ..++..+.|+|.+|+|||||+++|++.
T Consensus 110 g~~~~l~~l~-~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 110 GMGEVFKRVS-DVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp TCCHHHHHHH-HCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CChHHHHHHH-hCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3333444442 234558999999999999999999875
No 441
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.29 E-value=0.06 Score=51.65 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.1
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999874
No 442
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.20 E-value=0.067 Score=51.80 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=22.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4668999999999999999999874
No 443
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.18 E-value=0.074 Score=49.07 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+.|+|.+|+|||||+|.|++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999975
No 444
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=92.00 E-value=0.052 Score=60.41 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.5
Q ss_pred cceEEeccCCCChhHHHHHHHhhh
Q 008807 273 RDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
+++.|+|+..+|||||..+|+...
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~ 26 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNS 26 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998653
No 445
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.96 E-value=0.054 Score=48.47 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=22.9
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..++++|.+|+|||||++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6778999999999999999999875
No 446
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.95 E-value=0.069 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.8
Q ss_pred cccceEEeccCCCChhHHHHHHH
Q 008807 271 KGRDVYILGSANVGKSAFINALL 293 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~ 293 (553)
+|..+.++|.+|+|||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35578999999999999999754
No 447
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.91 E-value=0.088 Score=49.06 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..++++|.+|+|||||++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4668999999999999999999875
No 448
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.91 E-value=0.075 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.5
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4668999999999999999999875
No 449
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.89 E-value=0.078 Score=50.60 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4668899999999999999999874
No 450
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.86 E-value=0.073 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999875
No 451
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.84 E-value=0.078 Score=50.99 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=22.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4668999999999999999999875
No 452
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.82 E-value=0.093 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..++++|.+|+|||||.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999875
No 453
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.71 E-value=0.081 Score=51.81 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667899999999999999999874
No 454
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.70 E-value=0.081 Score=52.02 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.2
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4667899999999999999999874
No 455
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.65 E-value=0.09 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667899999999999999999873
No 456
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.58 E-value=0.085 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4668999999999999999999874
No 457
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.54 E-value=0.086 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4668899999999999999999874
No 458
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.50 E-value=0.098 Score=48.72 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.5
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..++++|.+|+|||||.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999875
No 459
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.49 E-value=0.084 Score=52.08 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4668899999999999999999875
No 460
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.43 E-value=0.092 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.1
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++++|.+|+|||||++.|.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 35789999999999999999863
No 461
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.42 E-value=0.092 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999874
No 462
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.42 E-value=0.097 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4668899999999999999999874
No 463
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.41 E-value=0.091 Score=51.78 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.2
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4667899999999999999999874
No 464
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.37 E-value=0.092 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4668899999999999999999875
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.35 E-value=0.093 Score=51.24 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.2
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4567899999999999999999875
No 466
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.35 E-value=0.093 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.1
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..+.++|.+|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999999875
No 467
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.31 E-value=0.11 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.9
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..++++|.+|+|||||++.|.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 46899999999999999999976
No 468
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.27 E-value=0.068 Score=53.93 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=22.6
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..++++|.+|+|||||++.|.+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 5678999999999999999999875
No 469
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.24 E-value=0.097 Score=51.33 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4668899999999999999999874
No 470
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.23 E-value=0.11 Score=47.07 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.0
Q ss_pred cccceEEeccCCCChhHHHHHHHhhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
+|..++++|..|+|||||++.|.+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46678999999999999999999864
No 471
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.22 E-value=0.11 Score=47.03 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..++++|.+|+||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 557899999999999999999865
No 472
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.09 E-value=0.13 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.3
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..+.++|.+|+|||||++.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 473
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.05 E-value=0.1 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.1
Q ss_pred hcccceEEeccCCCChhHHHHHHHhh
Q 008807 270 KKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.++..+.|+|.+|+|||||+++|.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35668999999999999999999975
No 474
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.03 E-value=0.11 Score=50.90 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999875
No 475
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.02 E-value=0.076 Score=50.63 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=17.1
Q ss_pred cccceEEeccCCCChhHHHHHHH-hh
Q 008807 271 KGRDVYILGSANVGKSAFINALL-KK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~-~~ 295 (553)
+|..++++|.+|+|||||++.|. +.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 46678999999999999999998 64
No 476
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.98 E-value=0.11 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4667899999999999999999875
No 477
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.93 E-value=0.14 Score=47.52 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=23.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhhhC
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKMG 297 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~~ 297 (553)
++..++++|.+|+||||+.+.|.+...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987643
No 478
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.92 E-value=0.11 Score=51.20 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.2
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4567899999999999999999874
No 479
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.90 E-value=0.11 Score=53.64 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=23.4
Q ss_pred hcccceEEeccCCCChhHHHHHHHhh
Q 008807 270 KKGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+|..++++|.+|+|||||+|+|.+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 35779999999999999999999975
No 480
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.85 E-value=0.13 Score=46.42 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.8
Q ss_pred ccceEEeccCCCChhHHHHHHHhhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
+..++++|.||+||||+.+.|....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999998763
No 481
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.81 E-value=0.13 Score=46.87 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.2
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..++++|.+|+|||||++++.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 482
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.70 E-value=0.14 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.5
Q ss_pred ceEEeccCCCChhHHHHHHHhhh
Q 008807 274 DVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
.++++|.+|+||||+.+.|....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998763
No 483
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.57 E-value=0.076 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.3
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.+.|+|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999975
No 484
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.51 E-value=0.1 Score=49.13 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 485
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.34 E-value=0.2 Score=48.93 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=23.6
Q ss_pred hcccceEEeccCCCChhHHHHHHHhhh
Q 008807 270 KKGRDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
+.+..++++|.+|+||||+.+.|.+..
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 347899999999999999999998753
No 486
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.33 E-value=0.13 Score=48.37 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=22.0
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667899999999999999999854
No 487
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.22 E-value=0.17 Score=48.73 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.3
Q ss_pred ccceEEeccCCCChhHHHHHHHhhhC
Q 008807 272 GRDVYILGSANVGKSAFINALLKKMG 297 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~~ 297 (553)
+..++++|.+|+|||||++.|.....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999995543
No 488
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.19 E-value=0.11 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.628 Sum_probs=23.0
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
++..+.++|.+|+|||||+|+|.+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5778999999999999999999975
No 489
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.15 E-value=0.16 Score=46.13 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.4
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..++|.|.+|+||||+.+.|...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 490
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.15 E-value=0.14 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.8
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
..+.++|.+|+|||||++.|.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 491
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.04 E-value=0.13 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=22.2
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..++++|.+|+|||||++.|.+.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4567899999999999999999874
No 492
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.03 E-value=0.16 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=22.0
Q ss_pred hcccceEEeccCCCChhHHHHHHHh
Q 008807 270 KKGRDVYILGSANVGKSAFINALLK 294 (553)
Q Consensus 270 ~~g~~v~ivG~~NVGKSTLIN~L~~ 294 (553)
.+|..+.++|.+|+|||||++.|..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999883
No 493
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=89.93 E-value=0.17 Score=57.00 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=21.0
Q ss_pred cceEEeccCCCChhHHHHHHHhh
Q 008807 273 RDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 273 ~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+++.|+|....|||||.-+|+..
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~ 36 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFY 36 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHh
Confidence 48999999999999999999854
No 494
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.91 E-value=0.18 Score=44.86 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.0
Q ss_pred ceEEeccCCCChhHHHHHHHhh
Q 008807 274 DVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
.++++|.+|+||||+.+.| ..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHH-HH
Confidence 5789999999999999999 54
No 495
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.89 E-value=0.2 Score=44.95 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=26.8
Q ss_pred ChhhhHHHHHHhh---cccceEEeccCCCChhHHHHHHHhh
Q 008807 258 GIVGVASEIQKEK---KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 258 gi~~Ll~~L~~~~---~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
|-++.++.+.+.+ ....+++.|.+|+|||+|++++...
T Consensus 26 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 26 GRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3344444444332 2357999999999999999999875
No 496
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.73 E-value=0.18 Score=45.85 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.3
Q ss_pred cccceEEeccCCCChhHHHHHHHhhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
++..++++|.+|+||||+.+.|....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998654
No 497
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.70 E-value=0.23 Score=49.61 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.2
Q ss_pred ccceEEeccCCCChhHHHHHHHhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+..+.|+|.+|+|||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999875
No 498
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.69 E-value=0.17 Score=46.26 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.6
Q ss_pred ccceEEeccCCCChhHHHHHHHhhh
Q 008807 272 GRDVYILGSANVGKSAFINALLKKM 296 (553)
Q Consensus 272 g~~v~ivG~~NVGKSTLIN~L~~~~ 296 (553)
+..++++|.+|+||||+.+.|....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4468999999999999999998753
No 499
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.67 E-value=0.17 Score=45.47 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=19.5
Q ss_pred ceEEeccCCCChhHHHHHHHh
Q 008807 274 DVYILGSANVGKSAFINALLK 294 (553)
Q Consensus 274 ~v~ivG~~NVGKSTLIN~L~~ 294 (553)
.++++|.||+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999999986
No 500
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.59 E-value=0.17 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.4
Q ss_pred cccceEEeccCCCChhHHHHHHHhh
Q 008807 271 KGRDVYILGSANVGKSAFINALLKK 295 (553)
Q Consensus 271 ~g~~v~ivG~~NVGKSTLIN~L~~~ 295 (553)
+|..+.++|.+|+|||||++.|.+-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 4668899999999999999999875
Done!