BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008808
(553 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/499 (48%), Positives = 318/499 (63%), Gaps = 21/499 (4%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGN 121
+NYG +PL +QS + +TG+ + V D+EVL R RVH TR G
Sbjct: 6 DNYGKLPL--IQSRDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGA 56
Query: 122 KLAFVVVRERVSTVQCLATV-KPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 180
LAF+ +R++ S +Q L K ++SK MV++ SL+ E IK AT
Sbjct: 57 TLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 116
Query: 181 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 238
Q +E+ I K+Y +S + PI +EDASRSEAE E A LP VN DTRL+ RVID
Sbjct: 117 VQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVID 171
Query: 239 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACL 298
+RT+ NQ IFRIQ+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y A L
Sbjct: 172 LRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYL 231
Query: 299 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 358
AQSPQ +KQ I DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D +
Sbjct: 232 AQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTL 291
Query: 359 DRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDP 416
LFV IF L E+E V KQYP E K K +RLT++EG++ML+ AG EI
Sbjct: 292 SELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGD 351
Query: 417 LGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEE 476
DL+TE+E+ LG+LV +KY T+FYIL ++PL +RPFYTMP N YSNS+D F+RGEE
Sbjct: 352 FEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEE 411
Query: 477 IISGAQRIHIPEFLAERAQACGIDVKT--ISTYIDSFRYGAPPHGGFGVGLERVVMLFCG 534
I+SGAQRIH L ER +A G+ + + Y D F YG PPH G G+GLERVVM +
Sbjct: 412 ILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLD 471
Query: 535 LNNIRKTSLYPRDPLRIAP 553
L NIR+ SL+PRDP R+ P
Sbjct: 472 LKNIRRASLFPRDPKRLRP 490
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/499 (48%), Positives = 318/499 (63%), Gaps = 21/499 (4%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGN 121
+NYG +PL +QS + +TG+ + V D+EVL R RVH TR G
Sbjct: 3 DNYGKLPL--IQSRDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGA 53
Query: 122 KLAFVVVRERVSTVQCLATV-KPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 180
LAF+ +R++ S +Q L K ++SK MV++ SL+ E IK AT
Sbjct: 54 TLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 113
Query: 181 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 238
Q +E+ I K+Y +S + PI +EDASRSEAE E A LP VN DTRL+ RVID
Sbjct: 114 VQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVID 168
Query: 239 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACL 298
+RT+ NQ IFRIQ+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y A L
Sbjct: 169 LRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYL 228
Query: 299 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 358
AQSPQ +KQ I DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D +
Sbjct: 229 AQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTL 288
Query: 359 DRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDP 416
LFV IF L E+E V KQYP E K K +RLT++EG++ML+ AG EI
Sbjct: 289 SELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGD 348
Query: 417 LGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEE 476
DL+TE+E+ LG+LV +KY T+FYIL ++PL +RPFYTMP N YSNS+D F+RGEE
Sbjct: 349 FEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEE 408
Query: 477 IISGAQRIHIPEFLAERAQACGIDVKT--ISTYIDSFRYGAPPHGGFGVGLERVVMLFCG 534
I+SGAQRIH L ER +A G+ + + Y D F YG PPH G G+GLERVVM +
Sbjct: 409 ILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLD 468
Query: 535 LNNIRKTSLYPRDPLRIAP 553
L NIR+ SL+PRDP R+ P
Sbjct: 469 LKNIRRASLFPRDPKRLRP 487
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/506 (45%), Positives = 317/506 (62%), Gaps = 43/506 (8%)
Query: 88 NGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS 147
G ++T + L ++ ++ V IR RV R GN + F+ +R+ + T Q L +K +++S
Sbjct: 46 TGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGN-MVFLFLRKGIYTCQALV-MKSETIS 103
Query: 148 KEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRAA-KTPITIED 205
KE V+F + +S E I+ ATQQ VE+ + + VS A P+ IED
Sbjct: 104 KEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIED 163
Query: 206 AS-------RSEAEIEKASK---------EGVQLPR----------------------VN 227
+ + E +I K + EG L + V+
Sbjct: 164 LTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVS 223
Query: 228 QDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVF 287
QDTRL+NR++D+RT+ N IFRIQS +FR+FL S+ FVEIHTPKLI SSEGGS +F
Sbjct: 224 QDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIF 283
Query: 288 RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347
+ Y + A LAQSPQL+KQM+I GDF +VFE GPVFRAE+S T RHL EF GLD+EMEI
Sbjct: 284 EVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEI 343
Query: 348 KKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 407
++Y E +D++++LF IFD + EL+ + KQYPFE L Y+P LRLT++E ++ML
Sbjct: 344 VENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRP-FLRLTYKEAIEML 402
Query: 408 KDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNS 467
+ +G I D T E KLG+L+ KY T+FYIL ++P A+RPFYTMP D+ YSNS
Sbjct: 403 RASGETIGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNS 462
Query: 468 FDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLER 527
+DVF+RG+EI SGAQRIH PEFL +R G+D T+ YI+SFR+G+ PH G G+GLER
Sbjct: 463 YDVFVRGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLER 522
Query: 528 VVMLFCGLNNIRKTSLYPRDPLRIAP 553
+ ML+ G+ NIRK +L+PRDP+R+ P
Sbjct: 523 ITMLYLGIPNIRKVTLFPRDPIRLNP 548
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 252 bits (643), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 239/452 (52%), Gaps = 27/452 (5%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEX 161
L Q+V + G V + +G + F+ +R+R VQ A K V E+ + + L +E
Sbjct: 14 LNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSED 70
Query: 162 XXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
A E+ +K+ ++RA +TP+ ++ + +AE+
Sbjct: 71 VVAVEGVVNFTPK----AKLGFEILPEKIVVLNRA-ETPLPLDPTGKVKAEL-------- 117
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
DTRL+NR +D+R IF+I+S V R F F+EIHTPK+IA ++E
Sbjct: 118 -------DTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATE 170
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ +F + Y + A LAQSPQL+KQ+ + RV+E P+FRAE+ T RHL E +
Sbjct: 171 GGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSI 230
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D EM + EVM ++RL + + KEL+ + FE + K R++++
Sbjct: 231 DSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILN----FELEEPKLPFPRVSYD 286
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
+ +++L D G EI D++TE ER LG+ ++E Y L++YP +PFY M +
Sbjct: 287 KALEILGDLGKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNK 346
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
+FD+ RG EI SG QR H + L E+ + G++ ++ Y+ +FRYG PPHGGF
Sbjct: 347 PEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGF 406
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+G ER++ L NIR+ L+PRD R+ P
Sbjct: 407 GLGAERLIKQMLDLPNIREVILFPRDRRRLTP 438
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 251 bits (640), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 239/452 (52%), Gaps = 27/452 (5%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEX 161
L Q+V + G V + +G + F+ +R+R VQ A K V E+ + + L +E
Sbjct: 14 LNGQKVKVAGWVWEVKDLGG-IKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSED 70
Query: 162 XXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
A E+ +K+ ++RA +TP+ ++ + +AE+
Sbjct: 71 VVAVEGVVNFTPK----AKLGFEILPEKIVVLNRA-ETPLPLDPTGKVKAEL-------- 117
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
DTRLNNR +D+R IF+I+S V R F F+EIHTPK+IA ++E
Sbjct: 118 -------DTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATE 170
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ +F + Y + A LA+SPQL+K++ + RV+E P+FRAE+ T RHL E +
Sbjct: 171 GGTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSI 230
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D EM + EVM ++RL + + KEL+ + FE + K R++++
Sbjct: 231 DSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILN----FELEEPKLPFPRVSYD 286
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
+ +++L D G EI D++TE ER LG+ ++E Y L++YP +PFY M +
Sbjct: 287 KALEILGDLGKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNK 346
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
+FD+ RG EI SG QR H + L E+ + G++ ++ Y+ +FRYG PPHGGF
Sbjct: 347 PEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGF 406
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+G ER++ L NIR+ L+PRD R+ P
Sbjct: 407 GLGAERLIKQMLDLPNIREVILFPRDRRRLTP 438
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 241 bits (615), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 155/452 (34%), Positives = 238/452 (52%), Gaps = 46/452 (10%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXXX 164
QEV + G +H R +G ++ F+++R+R VQ + + + +R VR L E
Sbjct: 14 QEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGLKLPLPESALR-VRGLVVENAK- 70
Query: 165 XXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAK-TPITIEDASRSEAEIEKASKEGVQL 223
A +EVQ K++ +S A + TP+ I
Sbjct: 71 --------------APGGLEVQAKEVEVLSPALEPTPVEIPKEEW--------------- 101
Query: 224 PRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGG 283
R N DT L R + +R + ++Q+ + FR++L ++F EI TPK++ +EGG
Sbjct: 102 -RANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGG 160
Query: 284 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
S +F +DY + A LAQSPQL+KQ+ + G F RV+E PV+R E+ +T RHL E+ LDV
Sbjct: 161 SGLFGVDYFEKRAYLAQSPQLYKQI-MVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDV 219
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
EM ++M + + L + + N E+ + +P + RLT E
Sbjct: 220 EMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP----SFPQDIPRLTHAEA 275
Query: 404 VQMLKDAGVEID-PLG-DLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
++LK+ E+ P+G DL+ E+ER LG+ E++G+++ + RYP +VRPFYT P D
Sbjct: 276 KRILKE---ELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDG 332
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
+ + SFD+ RG EI SG QRIH E L E +A G+D + Y++ F+YG PPHGGF
Sbjct: 333 T--TRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGF 390
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
+G ER+ GL N+R +PRD R+ P
Sbjct: 391 AIGAERLTQKLLGLPNVRYARAFPRDRHRLTP 422
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 235/449 (52%), Gaps = 36/449 (8%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXXX 164
+EV+ G VH R +G K F+++R++ Q + V K F +S E
Sbjct: 17 KEVIWAGWVHLLRDLGGK-KFIILRDKTGLGQVV-------VDKNSSAF--GISQELTQE 66
Query: 165 XXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLP 224
K A + +E+ +++ +S+A K P+ ++ + + +A+I
Sbjct: 67 SVIQVRGIVKADKRAPRGIELHAEEITLLSKA-KAPLPLDVSGKVKADI----------- 114
Query: 225 RVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS 284
DTRL RV+D+R Q + +IQS FR+ L E F+EI TPK+IA ++EGG+
Sbjct: 115 ----DTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGA 170
Query: 285 AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
+F + Y G+ A LAQSPQL+K++ + G RVFE P +RAE+S T HL EF +DVE
Sbjct: 171 QLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVE 229
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404
M Y++VM +++++ I + K+EL+ + +EP + K RL + E +
Sbjct: 230 MAFA-DYNDVMQLLEKILHNIVKTIKEEGKEELKILN----YEPPEVKIPIKRLKYTEAI 284
Query: 405 QMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLY 464
++L+ G I D+ T R L E+ + Y + +P RPFYT +N
Sbjct: 285 EILRSKGYNIKFGDDIGTPELRILN----EELKEDLYFIVDWPSDARPFYTKSKSENPEL 340
Query: 465 SNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVG 524
S SFD+ + EI+SG+ R H E L E + G+ ++ ++ F YG PPH GFG+G
Sbjct: 341 SESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMG 400
Query: 525 LERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
L R++++ G+ ++++ +PRD R+ P
Sbjct: 401 LARLMVMLTGIQSVKEIVPFPRDKKRLTP 429
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 131/455 (28%), Positives = 218/455 (47%), Gaps = 37/455 (8%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEX 161
L ++V + G V+T VG K+ F+ +R+ VQ A V + V +E + L E
Sbjct: 14 LDGKKVRLAGWVYTNMRVGKKI-FLWIRDSTGIVQ--AVVAKNVVGEETFEKAKKLGRES 70
Query: 162 XXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
GA EV ++KL + ++ PI E+AS E +
Sbjct: 71 SVIVEGIVKADERAPGGA----EVHVEKLEVIQAVSEFPIP--------ENPEQASPELL 118
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
L+ R + IRT I +++ + R++LL + + E+ P L+ G+ E
Sbjct: 119 ----------LDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVE 168
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ +F+L Y + A L+QS QL+ + +I G +V+ P FRAE S T RHL EF L
Sbjct: 169 GGATLFKLKYFDKYAYLSQSAQLYLEAAIFG-LEKVWSLTPSFRAEKSRTRRHLTEFWHL 227
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK-YKPKTLRLTF 400
++E + ++M + + L + + KKE+E LK +P R+++
Sbjct: 228 ELEAAWMDLW-DIMKVEEELVSYMVQRTLELRKKEIEMFRDD--LTTLKNTEPPFPRISY 284
Query: 401 EEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM--PC 458
+E + +L+ GV ++ DL + ER ++ E++ F++ + YP ++ FY P
Sbjct: 285 DEAIDILQSKGVNVEWGDDLGADEER----VLTEEFDRPFFV-YGYPKHIKAFYMKEDPN 339
Query: 459 HDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPH 518
+ ++ EII G+QR + L R G+D K Y+D RYG+ PH
Sbjct: 340 DPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPH 399
Query: 519 GGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
GFG+G+ER+V L++IR +L+PR P R+ P
Sbjct: 400 SGFGLGVERLVAWVLKLDHIRWAALFPRTPARLYP 434
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 117/463 (25%), Positives = 209/463 (45%), Gaps = 41/463 (8%)
Query: 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSN 159
L+ + V +G + R L FV +R+ QC+ K +++ R S
Sbjct: 26 AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSL 85
Query: 160 EXXXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKE 219
E +E+Q+ + + ++PI +E+ ++ I +
Sbjct: 86 EITGRLNAYAGKNHPPEIADILNLEMQVTEWKVI---GESPIDLENIINKDSSIPQ---- 138
Query: 220 GVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS 279
++ NR I IR+ Q + +++S++ FR++ +F EI P ++
Sbjct: 139 -----------KMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQ 187
Query: 280 SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFT 339
EGGS +F+L Y + A L QS QL+ + S+ G+ F +RAE S T RHL E+
Sbjct: 188 CEGGSTLFKLQYFNEPAYLTQSSQLYLE-SVIASLGKSFCMLSSYRAEQSRTVRHLAEYL 246
Query: 340 GLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 399
L+ E+ + ++++ ++ L T+ D NV + + K P L +P R+T
Sbjct: 247 HLEAELPFIS-FEDLLNHLEDLVCTVID---NVMAVHGDKIRKMNPHLKLPTRPFK-RMT 301
Query: 400 FEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK--------YGTEFYILHRYPLAVR 451
+ + ++ D G+ LN + + G+ + EK G +++H +P ++
Sbjct: 302 YADAIKYCNDHGI-------LNKDKPFEYGEDISEKPERQMTDEIGCPIFMIH-FPSKMK 353
Query: 452 PFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDS 510
FY + + S D+ + G EI+ G+ RI + L +A G++ Y
Sbjct: 354 AFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQ 413
Query: 511 FRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
+YG+ PHGG+G+G+ER+VM G ++IRK LYPR R P
Sbjct: 414 RKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCEP 456
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 129/466 (27%), Positives = 202/466 (43%), Gaps = 55/466 (11%)
Query: 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXX 162
+++ V I+G +H R G L F ++R+ +Q L K + + +L+
Sbjct: 10 RNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK-------LCQTYDALT---- 58
Query: 163 XXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQ 222
EI GA ++V A I D + + V
Sbjct: 59 -----VNTECTVEIYGAIKEVPEG-------KEAPNGHELIADFWKIIGNAPPGGIDNVL 106
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ D L+NR + IR + R+++ R+ + +VE+ P L+ EG
Sbjct: 107 NEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEG 166
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHL------- 335
GS +F LDY G+ + L QS QL+ + I G VF +RAE S T RHL
Sbjct: 167 GSTLFNLDYFGEQSFLTQSSQLYLETCI-PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVE 225
Query: 336 --CEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY--PFEPLKY 391
C F LD ME K V D VDRL + KK LE + ++ P P
Sbjct: 226 AECPFITLDDLME--KIEELVCDTVDRLLA------DEEAKKLLEHINPKFQPPERPF-- 275
Query: 392 KPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE--RKLGQLVLEKYGTEFYILHRYPLA 449
LR+ +++ ++ L++ VE + G+ T E + + + + +L+R+P
Sbjct: 276 ----LRMEYKDAIKWLQEHNVE-NEFGNTFTYGEDIAEAAERFMTDTINKPILLNRFPSE 330
Query: 450 VRPFYTM-PCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTY 507
++ FY DN+L + S D+ + G EI+ G+ RI + L++ + ID K Y
Sbjct: 331 IKAFYMQRDAQDNTL-TESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWY 389
Query: 508 IDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
+D YG PHGG+G+GLER + N+IR LYPR R P
Sbjct: 390 LDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP 435
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 126/465 (27%), Positives = 200/465 (43%), Gaps = 53/465 (11%)
Query: 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXX 162
+++ V I+G +H R G L F ++R+ +Q L K + + +L+
Sbjct: 12 RNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK-------LCQTYDALT---- 60
Query: 163 XXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQ 222
EI GA ++V A I D + + V
Sbjct: 61 -----VNTECTVEIYGAIKEVPEG-------KEAPNGHELIADFWKIIGNAPPGGIDNVL 108
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ D L+NR + IR + R+++ R+ + +VE+ P L+ EG
Sbjct: 109 NEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEG 168
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHL------- 335
GS +F LDY G+ + L QS QL+ + I G VF +RAE S T RHL
Sbjct: 169 GSTLFNLDYFGEQSFLTQSSQLYLETCI-PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVE 227
Query: 336 --CEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY--PFEPLKY 391
C F LD ME K V D VDRL + KK LE + ++ P P
Sbjct: 228 AECPFITLDDLME--KIEELVCDTVDRLLA------DEEAKKLLEHINPKFQPPERPF-- 277
Query: 392 KPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE--RKLGQLVLEKYGTEFYILHRYPLA 449
LR+ +++ ++ L++ VE + G+ T E + + + + +L+R+P
Sbjct: 278 ----LRMEYKDAIKWLQEHNVE-NEFGNTFTYGEDIAEAAERFMTDTINKPILLNRFPSE 332
Query: 450 VRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYI 508
++ FY ++ + S D+ + G EI+ G+ RI + L++ + ID K Y+
Sbjct: 333 IKAFYMQRDAKDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYL 392
Query: 509 DSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
D YG PHGG+G+GLER + N+IR LYPR R P
Sbjct: 393 DQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP 437
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 33/345 (9%)
Query: 227 NQDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP--KLIAGSSEGG 283
+Q+ R R +D I ++ F+++SQ+ + RQF+++ F+E+ TP ++I G +
Sbjct: 161 DQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAAR 220
Query: 284 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
+ + L +P+L+ + + G F RVFE FR E + RH EFT +++
Sbjct: 221 PFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE-GISVRHNPEFTMMEL 279
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY--PFEPL-------KYKPK 394
M Y +++++ + LF T+ + + V + PFE L KY+P+
Sbjct: 280 YMAYAD-YKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPE 338
Query: 395 TLRL---TFEEGVQMLKDAGVEIDP---LGDLNTESERKLGQLVLEKYGTEFYILHRYPL 448
T F+ + + G+ ++ LG + TE + + V E + + + YP
Sbjct: 339 TDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTE----IFEEVAEAHLIQPTFITEYPA 394
Query: 449 AVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAER------AQACGIDVK 502
V P N ++ F+ FI G EI +G ++ E A+R A+ G D
Sbjct: 395 EVSPL-ARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEA 453
Query: 503 TI--STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
Y+ + +G PP G G+G++R+VMLF + IR L+P
Sbjct: 454 MFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFP 498
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|B Chain B, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1LYL|C Chain C, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With
Lysine
pdb|1E1O|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal For, Complexed With
Lysine
pdb|1E1T|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
The Lysyl_adenylate Intermediate
pdb|1E22|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And The Non-Hydrolysable Atp Analogue Amp-Pcp
pdb|1E24|A Chain A, Lysyl-Trna Synthetase (Lysu) Hexagonal Form Complexed With
Lysine And Atp And Mn2+
Length = 504
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 159/349 (45%), Gaps = 41/349 (11%)
Query: 227 NQDTRLNNRVIDIRTLAN---QGIFRIQSQVGNIFRQFLLSENFVEIHTP--KLIAGSSE 281
+Q+ R R +D+ +AN + F ++S++ RQF+++ F+E+ TP ++I G +
Sbjct: 161 DQEVRYRQRYLDL--IANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGAS 218
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
+ + L +P+L+ + + G F RVFE FR E + RH EFT +
Sbjct: 219 ARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE-GISVRHNPEFTMM 277
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY--PFEPL-------KYK 392
++ M Y +++++ + LF T+ + K + PFE L KY+
Sbjct: 278 ELYMAYAD-YHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYR 336
Query: 393 PKTLRL---TFEEGVQMLKDAGVEIDP---LGDLNTE--SERKLGQLVLEKYGTEFYILH 444
P+T F+ + + G+ ++ LG + TE E L+ + TE
Sbjct: 337 PETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITE----- 391
Query: 445 RYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAER------AQACG 498
YP V P N ++ F+ FI G EI +G ++ E AER A+A G
Sbjct: 392 -YPAEVSPL-ARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAG 449
Query: 499 IDVKTI--STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
D Y+ + YG PP G G+G++R++MLF + IR L+P
Sbjct: 450 DDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
pdb|4EX5|B Chain B, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From
Burkholderia Thailandensis Bound To Lysine
Length = 529
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 144/356 (40%), Gaps = 49/356 (13%)
Query: 226 VNQDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEG 282
+Q+TR R +D I T + FR +++ R+F+ +F+E+ TP L I G +
Sbjct: 181 ADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAA 240
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
V + L +P+L+ + I G F RVFE FR E + RH EFT
Sbjct: 241 KPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNE-GVSPRHNPEFT--- 296
Query: 343 VEMEIKKHYSE---VMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 399
ME Y++ +MD +RL + L QY L RLT
Sbjct: 297 -MMEFYAAYTDYRWLMDFTERL-------IRQAAVDALGTATIQYQGRELDLAQPFHRLT 348
Query: 400 FEEGVQM-------------------LKDAGVEIDPLGDLNT---ESERKLGQLVLEKYG 437
+ +Q LK GV++ LN + L + E
Sbjct: 349 ITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQL 408
Query: 438 TEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAER---- 493
E + YP+ V P + + F++FI G EI +G ++ PE A R
Sbjct: 409 WEPTFIIDYPIEVSPL-ARESDTVAGITERFELFITGREIANGFSELNDPEDQAARFKKQ 467
Query: 494 -AQACGIDVKTI---STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
Q D + + + YI + YG PP GG G+G++R+VML IR L+P
Sbjct: 468 VEQKDAGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 148/347 (42%), Gaps = 40/347 (11%)
Query: 229 DTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSA 285
+ R R +D I ++ F +S + R++L S ++E+ TP + +AG +
Sbjct: 154 EQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPF 213
Query: 286 VFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEM 345
+ + + + + +LH + I G +V+E G VFR E T RH EFT L++
Sbjct: 214 ITHHNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGIST-RHNPEFTMLEL-Y 271
Query: 346 EIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF----- 400
E + ++M + + L + ++ + L QY + P+ RL
Sbjct: 272 EAYADFRDIMKLTENL-------IAHIATEVLGTTKIQYGEHLVDLTPEWRRLHMVDAIK 324
Query: 401 -------------EEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYP 447
EE ++ K+ GVE+ P Q V +K +I + +P
Sbjct: 325 EYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQPTFI-YGHP 383
Query: 448 LAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISG--------AQRIHIPEFLAERAQACGI 499
+ + P D+ +++ F++FI G E + QR E L ER Q
Sbjct: 384 VEISPL-AKKNPDDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDE 442
Query: 500 DVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPR 546
+ ++++ YG PP GG G+G++R+VML +IR L+P+
Sbjct: 443 AHEMDEDFLEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFPQ 489
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 129/302 (42%), Gaps = 32/302 (10%)
Query: 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLA-TVKPDSVSKEMVRF 153
G+L + +EV++ G V+ R +G L F+ +R+R VQ +A P + E VR
Sbjct: 7 AGSLRETHVGEEVVLEGWVNRRRDLGG-LIFLDLRDREGLVQLVAHPASPAYATAERVR- 64
Query: 154 VRSLSNEXXXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEI 213
+ AT +VEV++ L ++ A P ++ R
Sbjct: 65 ----PEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWR----- 115
Query: 214 EKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP 273
G + +++ RL R +D+R Q R++ +V FL E FV++ TP
Sbjct: 116 ------GEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETP 169
Query: 274 KLIAGSSEGGSAVFRLDYK---GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330
L + EG F + Y+ G L QSPQL KQM + R F+ FR ED
Sbjct: 170 FLTKSTPEGARD-FLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLR 228
Query: 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK 390
R +FT LD+EM + +V+++ +RL +F +E V PF L
Sbjct: 229 ADRQ-PDFTQLDLEMSFVE-VEDVLELNERLMAHVF--------REALGVELPLPFPRLS 278
Query: 391 YK 392
Y+
Sbjct: 279 YE 280
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 467 SFDVFIRGEEIISGAQRIHIPEFLAERAQACGI----DVKTISTYIDSFRYGAPPHGGFG 522
++D+ + G E+ G+ RIH P A + GI + ++++ YGAPPHGG
Sbjct: 467 AYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIA 526
Query: 523 VGLERVVMLFCGLNNIRKTSLYP-----RDPLRIAP 553
GL+R++ L G +IR+ +P +DPL AP
Sbjct: 527 WGLDRLLALMTGSPSIREVIAFPKNKEGKDPLTGAP 562
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 103/487 (21%), Positives = 183/487 (37%), Gaps = 79/487 (16%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEX 161
L D + + GR+H R G KL F +R +Q +A + +E + L
Sbjct: 53 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD 112
Query: 162 XXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
G T++ E+ I EI S
Sbjct: 113 IIGVQGN--------PGKTKKGELSI---------------------IPYEITLLSPCLH 143
Query: 222 QLPRV-----NQDTRLNNRVIDIRTLANQGI---FRIQSQVGNIFRQFLLSENFVEIHTP 273
LP + +++TR R +D+ + N + F I+S++ R FL F+EI TP
Sbjct: 144 MLPHLHFGLKDKETRYRQRYLDL--ILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETP 201
Query: 274 --KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331
+I G + + + + + +P+L+ +M + G RV+E G FR E
Sbjct: 202 MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNE-GID 260
Query: 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY 391
H EFT + M Y ++M+I +++ + + K + + +
Sbjct: 261 LTHNPEFTTCEFYMAYAD-YHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDF 319
Query: 392 KPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKL-----------------GQLVLE 434
P R+ E ++ K G+++ TE RK+ +L+
Sbjct: 320 TPPFRRINMVEELE--KALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLD 377
Query: 435 KYGTEFY--------ILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHI 486
K EF + +P + P L + F++F+ +EI + ++
Sbjct: 378 KLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGL-TERFELFVMKKEICNAYTELND 436
Query: 487 P----EFLAE--RAQACGIDVKTI--STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNI 538
P + E +A+A G D + + YG PP G+G+G++RV M NNI
Sbjct: 437 PMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNI 496
Query: 539 RKTSLYP 545
++ L+P
Sbjct: 497 KEVLLFP 503
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 103/487 (21%), Positives = 183/487 (37%), Gaps = 79/487 (16%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEX 161
L D + + GR+H R G KL F +R +Q +A + +E + L
Sbjct: 53 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD 112
Query: 162 XXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
G T++ E+ I EI S
Sbjct: 113 IIGVQGN--------PGKTKKGELSI---------------------IPYEITLLSPCLH 143
Query: 222 QLPRV-----NQDTRLNNRVIDIRTLANQGI---FRIQSQVGNIFRQFLLSENFVEIHTP 273
LP + +++TR R +D+ + N + F I+S++ R FL F+EI TP
Sbjct: 144 MLPHLHFGLKDKETRYRQRYLDL--ILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETP 201
Query: 274 --KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331
+I G + + + + + +P+L+ +M + G RV+E G FR E
Sbjct: 202 MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNE-GID 260
Query: 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY 391
H EFT + M Y ++M+I +++ + + K + + +
Sbjct: 261 LTHNPEFTTCEFYMAYAD-YHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDF 319
Query: 392 KPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKL-----------------GQLVLE 434
P R+ E ++ K G+++ TE RK+ +L+
Sbjct: 320 TPPFRRINMVEELE--KALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLD 377
Query: 435 KYGTEFY--------ILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHI 486
K EF + +P + P L + F++F+ +EI + ++
Sbjct: 378 KLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGL-TERFELFVMKKEICNAYTELND 436
Query: 487 P----EFLAE--RAQACGIDVKTI--STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNI 538
P + E +A+A G D + + YG PP G+G+G++RV M NNI
Sbjct: 437 PMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNI 496
Query: 539 RKTSLYP 545
++ L+P
Sbjct: 497 KEVLLFP 503
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 107/255 (41%), Gaps = 32/255 (12%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q+V + G V+ R +G+ L F+ +R+R VQ PD + ++
Sbjct: 7 GQLRLSHVGQQVTLCGWVNRRRDLGS-LIFIDMRDREGIVQVF--FDPDRA--DALKLAS 61
Query: 156 SLSNE---XXXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
L NE AT ++EV L ++RA P+ + EA
Sbjct: 62 ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA- 120
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
RL R +D+R + ++++ ++ R+F+ F++I T
Sbjct: 121 ------------------RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIET 162
Query: 273 PKLIAGSSEGGSAVF---RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329
P L + EG R+ +KG+ L QSPQL KQ+ + F R ++ FR ED
Sbjct: 163 PMLTKATPEGARDYLVPSRV-HKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDL 221
Query: 330 YTHRHLCEFTGLDVE 344
R EFT +DVE
Sbjct: 222 RADRQ-PEFTQIDVE 235
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 465 SNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGID----VKTISTYIDSFRYGAPPHGG 520
+N++D+ I G E+ G+ RIH + GI+ + +D+ +YG PPH G
Sbjct: 471 ANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAG 530
Query: 521 FGVGLERVVMLFCGLNNIRKTSLYPR 546
GL+R+ ML G +NIR +P+
Sbjct: 531 LAFGLDRLTMLLTGTDNIRDVIAFPK 556
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 107/255 (41%), Gaps = 32/255 (12%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q+V + G V+ R +G+ L F+ +R+R VQ PD + ++
Sbjct: 7 GQLRLSHVGQQVTLCGWVNRRRDLGS-LIFIDMRDREGIVQVF--FDPDRA--DALKLAS 61
Query: 156 SLSNE---XXXXXXXXXXXXXXEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
L NE AT ++EV L ++RA P+ + EA
Sbjct: 62 ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA- 120
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
RL R +D+R + ++++ ++ R+F+ F++I T
Sbjct: 121 ------------------RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIET 162
Query: 273 PKLIAGSSEGGSAVF---RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329
P L + EG R+ +KG+ L QSPQL KQ+ + F R ++ FR ED
Sbjct: 163 PMLTKATPEGARDYLVPSRV-HKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDL 221
Query: 330 YTHRHLCEFTGLDVE 344
R EFT +DVE
Sbjct: 222 RADRQ-PEFTQIDVE 235
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 465 SNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGID----VKTISTYIDSFRYGAPPHGG 520
+N++D+ I G E+ G+ RIH + GI+ + +D+ +YG PPH G
Sbjct: 471 ANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAG 530
Query: 521 FGVGLERVVMLFCGLNNIRKTSLYPR 546
GL+R+ ML G +NIR +P+
Sbjct: 531 LAFGLDRLTMLLTGTDNIRDVIAFPK 556
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|B Chain B, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|C Chain C, Human Mitochondrial Aspartyl-Trna Synthetase
pdb|4AH6|D Chain D, Human Mitochondrial Aspartyl-Trna Synthetase
Length = 617
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 24/173 (13%)
Query: 177 KGATQQVEVQIKKLYCVSRAAKTPITIED-ASRSEAEIEKASKEGVQLPRVNQDTRLNNR 235
K T ++E+++K ++ K P I++ ++EA RL R
Sbjct: 94 KMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEA------------------LRLQYR 135
Query: 236 VIDIRTLANQGIFRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDYK-- 292
+D+R+ Q R++SQ+ R++L + FV+I TP L + GG+ F + +
Sbjct: 136 YLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFK-RTPGGAKEFLVPSREP 194
Query: 293 GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEM 345
G+ L QSPQ KQ+ + G R F+ +R E S R EFT +D+EM
Sbjct: 195 GKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEM 246
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 446 YPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAER---AQACGIDVK 502
+P + YT P S +D+ + G EI G+ RIH E +R A DVK
Sbjct: 469 HPSDIHLLYTEP---KKARSQHYDLVLNGNEIGGGSIRIHNAEL--QRYILATLLKEDVK 523
Query: 503 TISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPR 546
+S + + YGAPPHGG +GL+R++ L G +IR +P+
Sbjct: 524 MLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPK 567
>pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964
Length = 294
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 126/310 (40%), Gaps = 49/310 (15%)
Query: 250 IQSQVGNIFRQFLLSENF-------VEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSP 302
IQ+++ F + E F + T L + G ++ G L S
Sbjct: 17 IQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSM 76
Query: 303 QLHKQMSICGDFGRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDR 360
LHKQ++I ++F P R E RH EFT LD E+E + ++M +++R
Sbjct: 77 ILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE-RAKMEDIMRLIER 135
Query: 361 LFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDL 420
L +F +K E +++P KT R E ++L++ G
Sbjct: 136 LVYGLF-------RKAEEWTGREFP--------KTKRFEVFEYSEVLEEFG--------- 171
Query: 421 NTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGE-EIIS 479
S+ K Q + E F+I++ R FY + + N + G E+ S
Sbjct: 172 ---SDEKASQEMEEP----FWIIN----IPREFYDREV--DGFWRNYDLILPYGYGEVAS 218
Query: 480 GAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGA-PPHGGFGVGLERVVMLFCGLNNI 538
G +R E + + + G++ + Y++ + G P G G+G+ER+V G +I
Sbjct: 219 GGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHI 278
Query: 539 RKTSLYPRDP 548
+ +PR P
Sbjct: 279 AEVQPFPRIP 288
>pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8T|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
pdb|3P8V|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8V|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid
pdb|3P8Y|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3P8Y|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine
pdb|3REU|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REU|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Aspartic Acid And Adenosine
Triphosphate
pdb|3REX|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3REX|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With Adenosine Monophosphate
pdb|3RL6|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
pdb|3RL6|B Chain B, Crystal Structure Of The Archaeal Asparagine Synthetase A
Complexed With L-Asparagine And Adenosine Monophosphate
Length = 294
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 111/268 (41%), Gaps = 50/268 (18%)
Query: 289 LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH--RHLCEFTGLDVEME 346
+D G L S LHKQ++I ++F P R E RH EFT LD E+E
Sbjct: 63 VDVYGVRMRLTHSMILHKQLAIAMGLEKIFVLSPNIRLESRRKDDGRHSYEFTQLDFEIE 122
Query: 347 IKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP----FEPLKYKPKTLRLTFEE 402
K +VM +++ L +F +K E +++P F+ YK
Sbjct: 123 GAKM-KDVMRLIEELIYGLF-------RKAEEWTGREFPRARHFKVYDYK---------- 164
Query: 403 GVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNS 462
+L++ G S+ K + E F+I++ R FY +N
Sbjct: 165 --DILEEFG------------SDEKASMEMEEP----FWIVN----IPREFYDR--EENG 200
Query: 463 LYSNSFDVFIRGE-EIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGA-PPHGG 520
++ N + G E+ SG +R E + + +A G+ + Y++ R G P G
Sbjct: 201 VWKNYDLILPYGYGEVSSGGEREWEYEKIVAKIRAAGLKEDSFRPYLEIARAGKLKPSAG 260
Query: 521 FGVGLERVVMLFCGLNNIRKTSLYPRDP 548
G+G+ER+V G +I + +PR P
Sbjct: 261 AGIGVERLVRFIVGAKHIAEVQPFPRVP 288
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
pdb|3G1Z|B Chain B, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase
From Salmonella Typhimurium
Length = 326
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 104/266 (39%), Gaps = 37/266 (13%)
Query: 292 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY 351
+G + L SP+ H + + G VF+ FR E+ H H EFT L+ + HY
Sbjct: 68 QGINLYLMTSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRH-HNPEFTMLEW---YRPHY 123
Query: 352 S--EVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409
+M+ VD L + D +A + +PL LR +
Sbjct: 124 DMYRLMNEVDDLLQQVLDCQPAESLSYQQAFQRHLEIDPLSADKTQLR-----------E 172
Query: 410 AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNS-- 467
A ++D +TE +R +L G E +I P + Y P SL S
Sbjct: 173 AAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKEKPTFI---YHFPASQASLAQISTE 229
Query: 468 -------FDVFIRGEEIISGAQRIHIPEFLAERAQ-------ACGIDVKTIS-TYIDSFR 512
F+V+ +G E+ +G + +R + A G+ + I +D+
Sbjct: 230 DHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQQPIDQNLLDALA 289
Query: 513 YGAPPHGGFGVGLERVVMLFCGLNNI 538
G P G +G++R+VML G ++
Sbjct: 290 AGLPDCSGVALGVDRLVMLALGAESL 315
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|B Chain B, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|C Chain C, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
pdb|3A5Y|D Chain D, Crystal Structure Of Genx From Escherichia Coli In Complex
With Lysyladenylate Analog
Length = 345
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 105/275 (38%), Gaps = 37/275 (13%)
Query: 292 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY 351
+G + L SP+ H + + G VF+ FR E+ + H EFT L+ + HY
Sbjct: 87 QGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRY-HNPEFTMLEW---YRPHY 142
Query: 352 S--EVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409
+M+ VD L + D +A + +PL LR +
Sbjct: 143 DMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLR-----------E 191
Query: 410 AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNS-- 467
++D +TE +R +L +G E I P V Y P SL S
Sbjct: 192 VAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFV---YHFPASQASLAQISTE 248
Query: 468 -------FDVFIRGEEIISGAQRIHIPEFLAERAQ-------ACGIDVKTIS-TYIDSFR 512
F+V+ +G E+ +G + +R + A G+ I I++ +
Sbjct: 249 DHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALK 308
Query: 513 YGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRD 547
G P G +G++R+VML G + + + D
Sbjct: 309 VGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVD 343
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|C Chain C, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|E Chain E, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
pdb|3A5Z|G Chain G, Crystal Structure Of Escherichia Coli Genx In Complex With
Elongation Factor P
Length = 328
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 105/275 (38%), Gaps = 37/275 (13%)
Query: 292 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY 351
+G + L SP+ H + + G VF+ FR E+ + H EFT L+ + HY
Sbjct: 70 QGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRY-HNPEFTMLEW---YRPHY 125
Query: 352 S--EVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409
+M+ VD L + D +A + +PL LR +
Sbjct: 126 DMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLR-----------E 174
Query: 410 AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNS-- 467
++D +TE +R +L +G E I P V Y P SL S
Sbjct: 175 VAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFV---YHFPASQASLAQISTE 231
Query: 468 -------FDVFIRGEEIISGAQRIHIPEFLAERAQ-------ACGIDVKTIS-TYIDSFR 512
F+V+ +G E+ +G + +R + A G+ I I++ +
Sbjct: 232 DHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALK 291
Query: 513 YGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRD 547
G P G +G++R+VML G + + + D
Sbjct: 292 VGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVD 326
>pdb|1ZB7|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type G Light
Chain
Length = 455
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 427 KLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISG---AQR 483
K+ L + EF++ H P+ YT HD S+ S S D+ I + + + A R
Sbjct: 243 KISNLPITPNTKEFFMQHSDPVQAEELYTFGGHDPSVISPSTDMNIYNKALQNFQDIANR 302
Query: 484 IHIPEFLAERAQACGIDVKTIS-TYIDSFRYGAPPHGGFGVGLERVVMLFCGL 535
++I AQ GID+ Y + + + P+G + V ++ L+ L
Sbjct: 303 LNI----VSSAQGSGIDISLYKQIYKNKYDFVEDPNGKYSVDKDKFDKLYKAL 351
>pdb|3V0A|A Chain A, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|A Chain A, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1296
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 63 NYGDV--PLQELQSVNDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTT 116
NYG++ LQ+ Q + K+S+ +N + W V N L + ++ I GR+
Sbjct: 979 NYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQ 1038
Query: 117 RPVGN 121
+P+ N
Sbjct: 1039 KPISN 1043
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 63 NYGDV--PLQELQSVNDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTT 116
NYG++ LQ+ Q + K+S+ +N + W V N L + ++ I GR+
Sbjct: 978 NYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQ 1037
Query: 117 RPVGN 121
+P+ N
Sbjct: 1038 KPISN 1042
>pdb|3V0C|A Chain A, 4.3 Angstrom Crystal Structure Of An Inactive BontA
(E224qR363AY366F)
Length = 1312
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 63 NYGDV--PLQELQSVNDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTT 116
NYG++ LQ+ Q + K+S+ +N + W V N L + ++ I GR+
Sbjct: 979 NYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQ 1038
Query: 117 RPVGN 121
+P+ N
Sbjct: 1039 KPISN 1043
>pdb|3FUO|A Chain A, The Crystal Structure Of Receptor Binding Domain Of
Botulinum Neurotoxin Serotype A
Length = 426
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 63 NYGDV--PLQELQSVNDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTT 116
NYG++ LQ+ Q + K+S+ +N + W V N L + ++ I GR+
Sbjct: 109 NYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQ 168
Query: 117 RPVGN 121
+P+ N
Sbjct: 169 KPISN 173
>pdb|2VU9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Binding Domain In Complex With Gt1b
pdb|2VUA|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Serotype A
Binding Domain
Length = 444
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 63 NYGDV--PLQELQSVNDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTT 116
NYG++ LQ+ Q + K+S+ +N + W V N L + ++ I GR+
Sbjct: 126 NYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQ 185
Query: 117 RPVGN 121
+P+ N
Sbjct: 186 KPISN 190
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
Length = 205
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 22/152 (14%)
Query: 256 NIFRQFL----LSENFVEIHTPKLIAGSSEGGSAVF--RLDYKGQSACLAQSPQLHKQMS 309
N F +F L+ EI TP + S G +F +L Q + PQL ++S
Sbjct: 66 NWFNEFTSFKELTVPIAEIWTPDIFIFDSVGAPEIFSDKLARVSQDGTVTYVPQLKVRLS 125
Query: 310 ICGDFGRVFETGPVFRAED-SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG 368
C ETG + S+TH E+ + +D+ D T F
Sbjct: 126 -CPLADLKLETGVTCSLKSGSWTHST----------QELTLEVNAKVDLGDYASDTRFQL 174
Query: 369 LNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF 400
LN + KQYP P Y+ TL TF
Sbjct: 175 LNAT----QQVNRKQYPCCPETYEDTTLSFTF 202
>pdb|3NKU|A Chain A, Crystal Structure Of The N-Terminal Domain Of DrraSIDM
FROM Legionella Pneumophila
pdb|3NKU|B Chain B, Crystal Structure Of The N-Terminal Domain Of DrraSIDM
FROM Legionella Pneumophila
Length = 213
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 365 IFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGV 412
+FD LNN+C++ A + YP +P+ P L T ++ LKD V
Sbjct: 124 VFDALNNLCQRIFTASNQIYP-DPIGINPSRLIGTPDDLFGXLKDGXV 170
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 17/144 (11%)
Query: 406 MLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSL-Y 464
+++ GV ID L +++R E+Y + + + F +PC DNS +
Sbjct: 100 LVRKFGVSIDCLNIAPVQNKRN------EEYNNQAGLADNITVKYGSFLEIPCEDNSYDF 153
Query: 465 SNSFDVFIRGEE---IISGAQRIHIPE---FLAERAQACGIDVKTISTYIDSFRYGAPPH 518
S D F+ + + R+ P + + + GID +I +D + H
Sbjct: 154 IWSQDAFLHSPDKLKVFQECARVLKPRGVXAITDPXKEDGIDKSSIQPILDRIKL----H 209
Query: 519 GGFGVGLERVVMLFCGLNNIRKTS 542
+GL R + CGL +R S
Sbjct: 210 DXGSLGLYRSLAKECGLVTLRTFS 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,176,014
Number of Sequences: 62578
Number of extensions: 558111
Number of successful extensions: 1567
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 51
length of query: 553
length of database: 14,973,337
effective HSP length: 104
effective length of query: 449
effective length of database: 8,465,225
effective search space: 3800886025
effective search space used: 3800886025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)