Query 008808
Match_columns 553
No_of_seqs 310 out of 1615
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 16:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0556 Aspartyl-tRNA syntheta 100.0 1E-147 3E-152 1111.4 40.0 525 13-553 6-533 (533)
2 PLN02850 aspartate-tRNA ligase 100.0 2E-131 4E-136 1075.8 52.0 528 10-553 2-530 (530)
3 PTZ00401 aspartyl-tRNA synthet 100.0 3E-126 7E-131 1035.1 49.9 509 17-553 6-550 (550)
4 KOG1885 Lysyl-tRNA synthetase 100.0 1E-115 3E-120 894.0 18.5 498 18-546 5-553 (560)
5 COG0017 AsnS Aspartyl/asparagi 100.0 1E-108 2E-113 859.6 43.3 426 93-553 5-435 (435)
6 PLN02502 lysyl-tRNA synthetase 100.0 1E-108 3E-113 897.5 44.9 497 15-548 2-550 (553)
7 PRK05159 aspC aspartyl-tRNA sy 100.0 8E-108 2E-112 879.4 48.0 433 92-553 4-437 (437)
8 TIGR00458 aspS_arch aspartyl-t 100.0 8E-107 2E-111 868.3 45.4 425 95-553 3-428 (428)
9 TIGR00499 lysS_bact lysyl-tRNA 100.0 6E-104 1E-108 857.0 41.2 436 75-549 20-494 (496)
10 PRK12445 lysyl-tRNA synthetase 100.0 1E-102 3E-107 846.3 42.9 433 75-549 33-503 (505)
11 PTZ00417 lysine-tRNA ligase; P 100.0 8E-102 2E-106 846.6 43.7 469 52-549 73-583 (585)
12 PRK00484 lysS lysyl-tRNA synth 100.0 3E-101 6E-106 836.2 42.2 436 75-549 21-489 (491)
13 TIGR00457 asnS asparaginyl-tRN 100.0 6E-101 1E-105 826.8 43.9 418 101-553 13-453 (453)
14 PRK03932 asnC asparaginyl-tRNA 100.0 3E-100 7E-105 821.7 43.7 425 94-553 5-450 (450)
15 COG1190 LysU Lysyl-tRNA synthe 100.0 8E-101 2E-105 802.9 30.9 434 75-547 28-498 (502)
16 PLN02221 asparaginyl-tRNA synt 100.0 8.6E-98 2E-102 811.9 41.4 418 100-552 46-571 (572)
17 PTZ00385 lysyl-tRNA synthetase 100.0 2.3E-97 5E-102 813.1 43.0 441 81-549 81-564 (659)
18 PTZ00425 asparagine-tRNA ligas 100.0 2.3E-95 5E-100 791.1 44.3 421 101-553 78-586 (586)
19 PLN02603 asparaginyl-tRNA synt 100.0 1.3E-95 3E-100 795.0 42.4 417 100-552 103-564 (565)
20 PRK02983 lysS lysyl-tRNA synth 100.0 1.9E-95 4E-100 847.6 41.8 446 64-549 613-1092(1094)
21 PLN02532 asparagine-tRNA synth 100.0 1.6E-93 3.6E-98 779.7 39.8 400 116-552 129-632 (633)
22 TIGR00459 aspS_bact aspartyl-t 100.0 8.2E-92 1.8E-96 767.5 44.0 430 93-550 4-556 (583)
23 COG0173 AspS Aspartyl-tRNA syn 100.0 8.6E-88 1.9E-92 707.6 40.0 416 92-550 3-559 (585)
24 PLN02903 aminoacyl-tRNA ligase 100.0 2.7E-87 5.9E-92 734.2 43.4 438 92-550 60-624 (652)
25 PRK00476 aspS aspartyl-tRNA sy 100.0 2.2E-86 4.8E-91 730.2 43.3 430 93-550 6-561 (588)
26 PRK12820 bifunctional aspartyl 100.0 1.1E-85 2.3E-90 728.2 42.4 446 92-550 6-577 (706)
27 cd00776 AsxRS_core Asx tRNA sy 100.0 1.6E-84 3.4E-89 673.5 30.7 318 226-549 2-322 (322)
28 KOG0555 Asparaginyl-tRNA synth 100.0 9E-82 1.9E-86 632.4 31.9 428 90-553 110-545 (545)
29 PRK06462 asparagine synthetase 100.0 5E-80 1.1E-84 642.3 29.6 317 226-553 8-335 (335)
30 PF00152 tRNA-synt_2: tRNA syn 100.0 2.2E-80 4.7E-85 647.9 24.8 313 227-549 1-335 (335)
31 KOG0554 Asparaginyl-tRNA synth 100.0 1.6E-77 3.5E-82 604.8 27.7 409 98-551 14-444 (446)
32 TIGR00462 genX lysyl-tRNA synt 100.0 2E-74 4.2E-79 593.2 26.2 281 248-544 1-304 (304)
33 KOG2411 Aspartyl-tRNA syntheta 100.0 3.3E-73 7.1E-78 584.5 31.1 420 92-549 35-599 (628)
34 cd00775 LysRS_core Lys_tRNA sy 100.0 1.6E-73 3.5E-78 592.5 29.1 294 242-548 2-328 (329)
35 cd00669 Asp_Lys_Asn_RS_core As 100.0 3.3E-72 7.1E-77 566.7 26.2 263 248-549 1-269 (269)
36 PRK09350 poxB regulator PoxA; 100.0 1.7E-66 3.7E-71 534.8 26.3 287 245-541 2-306 (306)
37 cd00777 AspRS_core Asp tRNA sy 100.0 7.4E-66 1.6E-70 523.2 25.7 269 248-549 1-280 (280)
38 COG2269 Truncated, possibly in 100.0 7.2E-57 1.6E-61 439.0 16.0 274 246-547 14-320 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.9 2.2E-22 4.9E-27 183.5 13.3 127 94-243 4-134 (135)
40 cd04322 LysRS_N LysRS_N: N-ter 99.9 2.6E-21 5.5E-26 169.8 13.5 107 106-239 1-108 (108)
41 cd04320 AspRS_cyto_N AspRS_cyt 99.8 6.9E-19 1.5E-23 152.8 14.0 100 106-205 1-102 (102)
42 cd04316 ND_PkAspRS_like_N ND_P 99.8 2.5E-18 5.5E-23 150.9 13.6 103 95-204 3-106 (108)
43 cd04319 PhAsnRS_like_N PhAsnRS 99.8 7.8E-18 1.7E-22 146.5 13.2 102 106-237 1-103 (103)
44 PRK09537 pylS pyrolysyl-tRNA s 99.7 1.4E-16 3E-21 168.3 14.6 118 225-347 179-314 (417)
45 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.7 1.3E-15 2.7E-20 127.8 12.2 85 106-195 1-85 (85)
46 cd04323 AsnRS_cyto_like_N AsnR 99.6 6.4E-15 1.4E-19 123.3 12.1 84 106-195 1-84 (84)
47 PTZ00213 asparagine synthetase 99.6 3.4E-13 7.3E-18 135.9 20.9 274 249-543 9-334 (348)
48 cd00645 AsnA Asparagine synthe 99.6 1.7E-13 3.7E-18 136.6 18.3 258 263-543 17-298 (309)
49 TIGR02367 PylS pyrrolysyl-tRNA 99.6 6E-14 1.3E-18 148.0 15.9 94 250-347 241-350 (453)
50 cd04321 ScAspRS_mt_like_N ScAs 99.5 5.8E-14 1.3E-18 118.1 12.2 85 106-195 1-86 (86)
51 cd00768 class_II_aaRS-like_cor 99.5 1.5E-14 3.2E-19 140.1 9.2 98 250-348 1-110 (211)
52 cd04318 EcAsnRS_like_N EcAsnRS 99.5 1E-13 2.2E-18 115.5 11.6 79 106-194 1-81 (82)
53 PRK05425 asparagine synthetase 99.5 9.3E-13 2E-17 132.5 20.6 253 263-543 28-308 (327)
54 PF01409 tRNA-synt_2d: tRNA sy 99.5 1.6E-12 3.4E-17 130.2 16.1 188 252-541 20-236 (247)
55 PRK00488 pheS phenylalanyl-tRN 99.4 1.6E-12 3.4E-17 134.3 15.7 111 252-366 111-237 (339)
56 TIGR00669 asnA aspartate--ammo 99.4 4.6E-11 1E-15 120.1 21.3 270 252-543 9-315 (330)
57 COG0016 PheS Phenylalanyl-tRNA 99.3 3.4E-11 7.4E-16 123.8 15.1 111 252-363 114-241 (335)
58 PLN02853 Probable phenylalanyl 99.3 4.3E-11 9.4E-16 128.6 15.9 31 314-345 342-372 (492)
59 PTZ00326 phenylalanyl-tRNA syn 99.3 1.1E-10 2.5E-15 125.9 17.3 33 314-347 357-389 (494)
60 TIGR00468 pheS phenylalanyl-tR 99.1 1E-09 2.3E-14 112.9 16.4 108 251-362 74-198 (294)
61 PLN02788 phenylalanine-tRNA sy 99.0 5.4E-09 1.2E-13 110.7 16.8 91 254-347 73-179 (402)
62 PRK04172 pheS phenylalanyl-tRN 99.0 7.1E-09 1.5E-13 114.1 18.0 99 248-347 232-382 (489)
63 cd00773 HisRS-like_core Class 98.9 3.9E-08 8.4E-13 99.6 18.1 99 249-348 3-115 (261)
64 PF01336 tRNA_anti-codon: OB-f 98.9 1.7E-08 3.6E-13 81.7 11.4 75 107-193 1-75 (75)
65 TIGR00470 sepS O-phosphoseryl- 98.7 7.9E-08 1.7E-12 102.1 11.6 51 313-363 206-257 (533)
66 TIGR00442 hisS histidyl-tRNA s 98.7 1.5E-06 3.2E-11 93.4 20.6 102 246-348 12-130 (397)
67 TIGR00443 hisZ_biosyn_reg ATP 98.6 2.1E-06 4.6E-11 89.4 18.4 116 247-364 7-139 (314)
68 TIGR00469 pheS_mito phenylalan 98.6 1.3E-06 2.8E-11 93.6 16.4 53 291-346 103-164 (460)
69 cd00496 PheRS_alpha_core Pheny 98.5 4.7E-07 1E-11 89.4 9.4 107 253-363 5-129 (218)
70 PRK12293 hisZ ATP phosphoribos 98.5 5.5E-06 1.2E-10 84.9 17.5 112 247-365 18-139 (281)
71 PRK12421 ATP phosphoribosyltra 98.4 2.1E-05 4.6E-10 84.4 20.9 118 247-365 20-154 (392)
72 CHL00201 syh histidine-tRNA sy 98.4 2.3E-05 5.1E-10 85.1 21.3 101 247-348 17-135 (430)
73 PLN02972 Histidyl-tRNA synthet 98.4 7.5E-06 1.6E-10 93.1 17.9 119 245-364 338-470 (763)
74 PLN02530 histidine-tRNA ligase 98.4 6.8E-06 1.5E-10 90.6 16.9 115 246-363 82-215 (487)
75 PRK12420 histidyl-tRNA synthet 98.4 6.5E-06 1.4E-10 89.2 15.4 115 247-364 17-151 (423)
76 PRK12292 hisZ ATP phosphoribos 98.4 8.3E-06 1.8E-10 87.5 15.4 117 246-365 15-151 (391)
77 PF00587 tRNA-synt_2b: tRNA sy 98.3 1.4E-06 3E-11 82.6 7.6 116 250-367 1-136 (173)
78 COG0124 HisS Histidyl-tRNA syn 98.2 8E-05 1.7E-09 80.2 18.2 118 247-365 17-154 (429)
79 cd00670 Gly_His_Pro_Ser_Thr_tR 98.0 2.1E-05 4.5E-10 78.0 9.1 113 249-363 3-137 (235)
80 COG2502 AsnA Asparagine synthe 98.0 0.00055 1.2E-08 67.4 17.3 267 256-543 17-315 (330)
81 PRK00037 hisS histidyl-tRNA sy 97.9 4.5E-05 9.8E-10 82.3 10.2 101 246-347 16-130 (412)
82 cd00778 ProRS_core_arch_euk Pr 97.8 4.6E-05 1E-09 77.3 7.7 117 247-364 31-170 (261)
83 cd00772 ProRS_core Prolyl-tRNA 97.8 0.0002 4.3E-09 72.9 11.7 114 248-363 32-169 (264)
84 cd00774 GlyRS-like_core Glycyl 97.7 7.6E-05 1.6E-09 75.4 6.9 93 248-346 32-141 (254)
85 cd00779 ProRS_core_prok Prolyl 97.7 0.00015 3.3E-09 73.3 9.0 114 248-363 31-163 (255)
86 cd00770 SerRS_core Seryl-tRNA 97.7 0.00017 3.7E-09 74.6 9.5 115 246-364 50-185 (297)
87 PRK09194 prolyl-tRNA synthetas 97.6 0.00035 7.7E-09 78.6 11.8 121 247-369 46-188 (565)
88 cd00771 ThrRS_core Threonyl-tR 97.6 0.00036 7.9E-09 72.2 10.8 115 248-364 30-162 (298)
89 TIGR00409 proS_fam_II prolyl-t 97.6 0.00041 8.9E-09 77.8 11.9 122 247-369 46-188 (568)
90 PLN02908 threonyl-tRNA synthet 97.6 0.00037 8E-09 80.1 10.8 121 246-368 319-457 (686)
91 PF13393 tRNA-synt_His: Histid 97.5 0.00059 1.3E-08 70.7 10.8 117 246-363 8-139 (311)
92 PRK03991 threonyl-tRNA synthet 97.5 0.00059 1.3E-08 77.2 10.6 122 246-368 225-365 (613)
93 PRK05431 seryl-tRNA synthetase 97.4 0.00072 1.6E-08 73.4 10.7 115 247-365 169-305 (425)
94 PRK12305 thrS threonyl-tRNA sy 97.4 0.00061 1.3E-08 76.8 10.4 120 247-368 205-343 (575)
95 TIGR00414 serS seryl-tRNA synt 97.4 0.0012 2.6E-08 71.5 11.7 115 247-365 172-307 (418)
96 PRK00960 seryl-tRNA synthetase 97.4 0.0031 6.6E-08 69.6 14.4 114 247-363 222-385 (517)
97 PRK14799 thrS threonyl-tRNA sy 97.3 0.00092 2E-08 74.5 10.3 119 247-367 167-303 (545)
98 PRK00413 thrS threonyl-tRNA sy 97.3 0.00082 1.8E-08 76.7 9.9 117 246-364 268-403 (638)
99 PRK12444 threonyl-tRNA synthet 97.3 0.0011 2.4E-08 75.7 10.9 116 249-366 275-408 (639)
100 PRK08661 prolyl-tRNA synthetas 97.3 0.00062 1.3E-08 75.0 8.2 115 247-363 43-180 (477)
101 TIGR00418 thrS threonyl-tRNA s 97.3 0.00093 2E-08 75.2 9.8 115 248-365 200-334 (563)
102 PRK12325 prolyl-tRNA synthetas 97.2 0.0018 3.8E-08 70.7 10.2 114 248-363 47-179 (439)
103 TIGR00408 proS_fam_I prolyl-tR 97.1 0.001 2.2E-08 73.2 7.7 117 248-365 38-177 (472)
104 PLN02837 threonine-tRNA ligase 96.9 0.0038 8.3E-08 70.9 10.3 119 246-366 245-382 (614)
105 PRK12295 hisZ ATP phosphoribos 96.8 0.0071 1.5E-07 64.6 10.6 109 253-365 9-133 (373)
106 cd04489 ExoVII_LU_OBF ExoVII_L 96.8 0.017 3.7E-07 46.9 10.5 74 107-191 2-75 (78)
107 PLN02678 seryl-tRNA synthetase 96.8 0.0047 1E-07 67.2 8.9 117 247-365 173-312 (448)
108 KOG2784 Phenylalanyl-tRNA synt 96.6 0.0021 4.4E-08 66.5 4.6 47 315-362 334-381 (483)
109 PF13742 tRNA_anti_2: OB-fold 96.6 0.018 4E-07 49.6 9.6 76 104-191 21-98 (99)
110 PRK04173 glycyl-tRNA synthetas 96.5 0.0078 1.7E-07 66.0 8.6 48 315-366 187-238 (456)
111 cd04487 RecJ_OBF2_like RecJ_OB 96.0 0.059 1.3E-06 43.8 9.1 73 107-193 1-73 (73)
112 KOG1936 Histidyl-tRNA syntheta 96.0 0.15 3.3E-06 54.2 14.2 108 246-356 72-191 (518)
113 COG1107 Archaea-specific RecJ- 96.0 0.0081 1.8E-07 65.6 4.8 88 92-194 202-289 (715)
114 PLN02320 seryl-tRNA synthetase 95.9 0.023 4.9E-07 62.5 8.1 116 249-368 234-371 (502)
115 PRK12294 hisZ ATP phosphoribos 95.8 0.062 1.3E-06 54.9 10.0 93 245-347 4-109 (272)
116 TIGR00415 serS_MJ seryl-tRNA s 95.6 0.069 1.5E-06 58.6 10.1 116 246-363 221-385 (520)
117 cd04485 DnaE_OBF DnaE_OBF: A s 95.4 0.13 2.8E-06 41.5 9.1 72 109-193 2-77 (84)
118 PRK07373 DNA polymerase III su 95.4 0.084 1.8E-06 57.7 10.0 85 94-191 270-358 (449)
119 cd04478 RPA2_DBD_D RPA2_DBD_D: 95.3 0.17 3.7E-06 42.8 9.8 77 107-194 2-78 (95)
120 cd03524 RPA2_OBF_family RPA2_O 95.3 0.25 5.4E-06 38.3 10.0 69 109-190 2-73 (75)
121 COG0442 ProS Prolyl-tRNA synth 95.2 0.049 1.1E-06 60.0 7.4 116 247-363 46-179 (500)
122 cd04474 RPA1_DBD_A RPA1_DBD_A: 95.1 0.17 3.8E-06 43.9 9.4 86 95-189 2-98 (104)
123 cd04482 RPA2_OBF_like RPA2_OBF 95.0 0.17 3.6E-06 43.0 8.5 75 107-196 1-77 (91)
124 cd04492 YhaM_OBF_like YhaM_OBF 94.5 0.88 1.9E-05 36.8 11.6 63 118-194 15-77 (83)
125 COG0423 GRS1 Glycyl-tRNA synth 94.3 0.068 1.5E-06 58.3 5.8 29 249-277 41-71 (558)
126 PF04076 BOF: Bacterial OB fol 94.3 0.29 6.3E-06 42.5 8.6 79 93-191 23-102 (103)
127 cd04483 hOBFC1_like hOBFC1_lik 94.2 0.52 1.1E-05 40.1 9.9 75 109-191 2-90 (92)
128 PRK06253 O-phosphoseryl-tRNA s 94.1 0.78 1.7E-05 50.6 13.2 36 513-548 312-350 (529)
129 KOG2324 Prolyl-tRNA synthetase 94.0 0.16 3.5E-06 52.9 7.3 109 248-357 52-179 (457)
130 PRK09616 pheT phenylalanyl-tRN 93.5 0.33 7.2E-06 54.6 9.5 110 253-363 363-487 (552)
131 PRK07374 dnaE DNA polymerase I 93.5 0.33 7.1E-06 59.0 9.9 85 95-192 991-1079(1170)
132 COG0441 ThrS Threonyl-tRNA syn 93.2 0.15 3.3E-06 57.3 6.2 116 249-366 221-354 (589)
133 cd04490 PolII_SU_OBF PolII_SU_ 93.2 1.4 3E-05 36.4 10.4 57 107-171 2-62 (79)
134 TIGR00389 glyS_dimeric glycyl- 93.2 0.079 1.7E-06 59.1 3.9 31 248-278 37-68 (551)
135 COG0172 SerS Seryl-tRNA synthe 93.2 0.35 7.6E-06 52.2 8.6 114 247-364 173-307 (429)
136 PRK05673 dnaE DNA polymerase I 92.9 0.39 8.5E-06 58.3 9.4 87 94-193 967-1057(1135)
137 TIGR00156 conserved hypothetic 92.7 0.77 1.7E-05 41.4 8.7 79 93-191 46-125 (126)
138 PF10451 Stn1: Telomere regula 92.7 0.39 8.4E-06 48.6 7.7 75 105-194 67-148 (256)
139 PRK06826 dnaE DNA polymerase I 92.4 0.72 1.6E-05 56.1 10.7 80 102-193 989-1072(1151)
140 PRK06920 dnaE DNA polymerase I 92.2 0.71 1.5E-05 55.8 10.3 86 94-193 934-1023(1107)
141 cd04479 RPA3 RPA3: A subfamily 92.1 1.4 3.1E-05 38.0 9.6 54 101-171 12-66 (101)
142 PRK05672 dnaE2 error-prone DNA 91.7 0.66 1.4E-05 55.9 9.2 86 97-195 946-1033(1046)
143 PRK10053 hypothetical protein; 91.6 1.2 2.7E-05 40.3 8.8 79 93-191 50-129 (130)
144 COG3111 Periplasmic protein wi 91.5 1.2 2.7E-05 39.6 8.4 82 92-193 45-127 (128)
145 PRK07279 dnaE DNA polymerase I 90.7 1.2 2.6E-05 53.4 10.1 76 103-191 883-963 (1034)
146 TIGR00617 rpa1 replication fac 90.4 2.2 4.8E-05 48.6 11.5 99 91-198 179-287 (608)
147 COG1570 XseA Exonuclease VII, 89.5 1.2 2.6E-05 48.2 8.0 76 105-191 24-99 (440)
148 cd00769 PheRS_beta_core Phenyl 89.2 0.96 2.1E-05 43.7 6.5 107 253-363 4-135 (198)
149 PRK07459 single-stranded DNA-b 89.0 8.4 0.00018 34.4 11.8 85 106-196 5-104 (121)
150 PF08661 Rep_fac-A_3: Replicat 88.4 2.7 5.9E-05 36.7 8.2 58 101-173 15-73 (109)
151 KOG2783 Phenylalanyl-tRNA synt 88.4 0.25 5.3E-06 51.9 1.8 56 292-348 129-184 (436)
152 COG4085 Predicted RNA-binding 87.6 2.5 5.4E-05 40.5 7.8 66 102-171 49-118 (204)
153 cd04488 RecG_wedge_OBF RecG_we 87.1 7.5 0.00016 30.3 9.5 57 109-172 2-61 (75)
154 PRK15491 replication factor A; 87.0 3.8 8.3E-05 43.9 9.9 93 92-199 57-159 (374)
155 PRK08486 single-stranded DNA-b 87.0 10 0.00022 36.5 11.7 59 132-196 48-108 (182)
156 COG3705 HisZ ATP phosphoribosy 86.2 1.6 3.4E-05 46.8 6.4 97 248-345 17-125 (390)
157 PRK06863 single-stranded DNA-b 86.1 15 0.00032 34.9 12.2 57 134-196 53-111 (168)
158 PRK07275 single-stranded DNA-b 85.7 14 0.00029 34.9 11.7 85 106-196 4-106 (162)
159 TIGR00237 xseA exodeoxyribonuc 85.6 3.5 7.5E-05 45.1 8.8 76 106-192 19-94 (432)
160 PF00436 SSB: Single-strand bi 85.6 11 0.00024 31.8 10.4 54 134-193 49-104 (104)
161 PRK06751 single-stranded DNA-b 85.3 17 0.00037 34.6 12.3 58 133-196 47-106 (173)
162 PRK10917 ATP-dependent DNA hel 85.1 3.8 8.1E-05 47.5 9.3 67 98-171 53-122 (681)
163 PF12869 tRNA_anti-like: tRNA_ 85.0 3.2 6.9E-05 37.7 7.1 67 100-171 63-131 (144)
164 PRK00286 xseA exodeoxyribonucl 85.0 4.2 9.1E-05 44.4 9.2 79 104-193 23-101 (438)
165 PRK02801 primosomal replicatio 83.5 24 0.00053 30.4 11.5 52 134-193 49-100 (101)
166 PRK06752 single-stranded DNA-b 83.4 29 0.00064 30.3 12.2 58 133-196 47-106 (112)
167 PRK12366 replication factor A; 83.3 6 0.00013 45.4 9.8 93 92-193 279-380 (637)
168 PRK06293 single-stranded DNA-b 82.7 26 0.00056 33.0 12.1 59 132-196 42-102 (161)
169 KOG2509 Seryl-tRNA synthetase 82.5 3.1 6.8E-05 44.7 6.6 116 246-363 183-319 (455)
170 PRK13480 3'-5' exoribonuclease 82.0 13 0.00028 39.0 10.8 80 103-196 10-93 (314)
171 PRK07274 single-stranded DNA-b 81.2 32 0.00069 31.1 11.9 43 153-195 61-104 (131)
172 PRK07211 replication factor A; 80.7 13 0.00027 41.2 10.6 82 93-190 54-146 (485)
173 TIGR00621 ssb single stranded 79.4 34 0.00074 32.2 11.9 58 133-196 51-110 (164)
174 PRK13732 single-stranded DNA-b 79.4 35 0.00076 32.6 12.0 45 153-197 68-116 (175)
175 PF03100 CcmE: CcmE; InterPro 79.4 36 0.00077 30.8 11.6 84 92-198 36-125 (131)
176 PRK06461 single-stranded DNA-b 79.2 21 0.00046 32.2 10.0 85 92-195 4-100 (129)
177 cd04484 polC_OBF polC_OBF: A s 78.7 36 0.00077 28.1 11.0 74 107-191 2-80 (82)
178 PRK08763 single-stranded DNA-b 78.7 44 0.00095 31.6 12.3 44 153-196 66-111 (164)
179 PRK14699 replication factor A; 78.6 12 0.00025 41.6 9.7 89 93-197 58-157 (484)
180 PRK06958 single-stranded DNA-b 77.1 42 0.00092 32.3 11.8 59 132-196 51-111 (182)
181 COG2024 Phenylalanyl-tRNA synt 76.1 1.6 3.5E-05 46.0 2.0 35 511-546 317-352 (536)
182 KOG1035 eIF-2alpha kinase GCN2 75.9 6.5 0.00014 47.5 7.0 116 248-367 932-1057(1351)
183 PRK07135 dnaE DNA polymerase I 75.1 9.4 0.0002 45.8 8.3 64 103-173 896-962 (973)
184 PRK07080 hypothetical protein; 75.0 3.2 6.9E-05 43.1 3.8 46 316-363 153-199 (317)
185 PF03590 AsnA: Aspartate-ammon 74.7 29 0.00062 34.7 10.1 118 252-370 7-143 (244)
186 TIGR00643 recG ATP-dependent D 74.1 16 0.00034 42.0 9.6 67 97-172 25-96 (630)
187 TIGR00471 pheT_arch phenylalan 73.7 11 0.00024 42.6 8.0 109 252-363 365-489 (551)
188 PRK12366 replication factor A; 72.8 19 0.00041 41.4 9.8 84 91-189 62-154 (637)
189 PRK14699 replication factor A; 71.3 20 0.00043 39.8 9.1 91 94-197 278-377 (484)
190 PRK05813 single-stranded DNA-b 71.2 75 0.0016 31.5 12.3 86 104-196 109-210 (219)
191 cd04496 SSB_OBF SSB_OBF: A sub 71.2 23 0.0005 29.5 7.8 57 131-193 42-100 (100)
192 PRK15491 replication factor A; 70.4 20 0.00043 38.5 8.7 81 105-197 177-267 (374)
193 PF15072 DUF4539: Domain of un 70.4 20 0.00042 30.2 6.8 57 108-171 6-62 (86)
194 PRK13254 cytochrome c-type bio 70.0 71 0.0015 29.7 11.1 75 102-199 49-126 (148)
195 PRK06642 single-stranded DNA-b 69.9 92 0.002 29.0 12.0 44 153-196 68-117 (152)
196 cd04491 SoSSB_OBF SoSSB_OBF: A 69.6 43 0.00092 27.2 8.8 53 122-190 23-76 (82)
197 cd00496 PheRS_alpha_core Pheny 68.3 10 0.00023 37.2 5.7 34 513-548 181-217 (218)
198 COG1200 RecG RecG-like helicas 66.8 57 0.0012 37.5 11.6 82 98-194 54-139 (677)
199 PRK07211 replication factor A; 65.9 35 0.00077 37.8 9.6 80 104-197 171-260 (485)
200 PRK00037 hisS histidyl-tRNA sy 63.8 12 0.00026 40.3 5.6 57 468-545 264-325 (412)
201 PRK05813 single-stranded DNA-b 63.5 92 0.002 30.9 11.2 87 102-196 6-103 (219)
202 PRK14894 glycyl-tRNA synthetas 63.4 4.6 0.0001 44.6 2.2 28 316-345 167-198 (539)
203 KOG3108 Single-stranded DNA-bi 63.4 40 0.00086 34.4 8.7 64 105-173 69-132 (265)
204 PRK07217 replication factor A; 61.8 98 0.0021 32.3 11.3 88 92-197 72-162 (311)
205 PRK07772 single-stranded DNA-b 59.9 1.6E+02 0.0034 28.5 11.8 52 133-190 53-106 (186)
206 PRK13165 cytochrome c-type bio 59.9 1.3E+02 0.0027 28.4 10.7 80 102-204 55-140 (160)
207 COG5235 RFA2 Single-stranded D 59.5 40 0.00086 33.0 7.4 61 106-171 68-128 (258)
208 PRK04036 DNA polymerase II sma 59.3 35 0.00076 38.1 8.3 65 103-171 152-216 (504)
209 PLN02265 probable phenylalanyl 59.2 27 0.00059 39.9 7.5 110 251-363 399-526 (597)
210 PRK00036 primosomal replicatio 56.4 39 0.00084 29.6 6.3 53 133-196 47-99 (107)
211 PRK08182 single-stranded DNA-b 56.2 1.7E+02 0.0036 27.1 12.2 57 134-196 55-113 (148)
212 PLN02734 glycyl-tRNA synthetas 55.8 4 8.7E-05 46.8 0.2 30 316-348 277-310 (684)
213 COG1571 Predicted DNA-binding 54.0 60 0.0013 35.2 8.6 63 104-171 266-330 (421)
214 PRK13150 cytochrome c-type bio 53.8 1.5E+02 0.0032 28.0 10.1 81 102-205 55-141 (159)
215 PRK07218 replication factor A; 53.7 70 0.0015 34.9 9.2 82 92-193 58-146 (423)
216 PRK08402 replication factor A; 53.3 70 0.0015 34.1 8.9 88 92-193 62-159 (355)
217 PRK06341 single-stranded DNA-b 51.9 2.2E+02 0.0047 27.0 12.1 44 153-196 68-117 (166)
218 cd05694 S1_Rrp5_repeat_hs2_sc2 51.8 30 0.00065 27.9 4.7 47 108-166 7-53 (74)
219 TIGR00594 polc DNA-directed DN 51.6 24 0.00051 42.9 5.7 38 102-139 979-1021(1022)
220 cd00673 AlaRS_core Alanyl-tRNA 51.1 36 0.00077 34.0 5.9 86 252-351 2-94 (232)
221 PRK12295 hisZ ATP phosphoribos 49.9 20 0.00043 38.4 4.3 44 467-531 323-370 (373)
222 PRK00448 polC DNA polymerase I 49.2 3.7E+02 0.008 34.2 15.4 74 93-172 227-304 (1437)
223 PRK06386 replication factor A; 48.9 1.9E+02 0.0041 30.9 11.3 90 92-196 107-197 (358)
224 PRK14908 glycyl-tRNA synthetas 47.2 23 0.0005 42.5 4.6 60 462-544 125-184 (1000)
225 PF02091 tRNA-synt_2e: Glycyl- 46.6 16 0.00035 36.9 2.7 61 459-543 116-177 (284)
226 PF13567 DUF4131: Domain of un 46.4 1.7E+02 0.0036 26.2 9.5 61 104-174 75-146 (176)
227 COG2965 PriB Primosomal replic 46.1 82 0.0018 27.1 6.4 86 106-193 6-102 (103)
228 cd05707 S1_Rrp5_repeat_sc11 S1 45.6 48 0.001 25.7 4.9 51 108-166 3-54 (68)
229 PF12569 NARP1: NMDA receptor- 44.8 35 0.00076 38.2 5.4 26 18-43 404-429 (517)
230 cd04486 YhcR_OBF_like YhcR_OBF 44.3 1.7E+02 0.0038 23.8 8.3 54 109-172 2-60 (78)
231 cd05703 S1_Rrp5_repeat_hs12_sc 44.0 39 0.00085 27.0 4.2 51 108-166 3-56 (73)
232 cd00733 GlyRS_alpha_core Class 41.3 19 0.00041 36.2 2.2 58 462-543 120-178 (279)
233 KOG2298 Glycyl-tRNA synthetase 41.1 5.6 0.00012 43.3 -1.5 26 319-344 214-241 (599)
234 cd04480 RPA1_DBD_A_like RPA1_D 41.0 1.7E+02 0.0037 23.9 7.8 56 110-172 8-64 (86)
235 PRK09348 glyQ glycyl-tRNA synt 39.9 20 0.00044 36.1 2.2 59 462-543 124-182 (283)
236 PF15513 DUF4651: Domain of un 39.0 36 0.00079 26.8 3.0 22 249-270 2-23 (62)
237 PRK07218 replication factor A; 38.9 2.7E+02 0.0057 30.5 10.8 75 104-195 172-253 (423)
238 TIGR01405 polC_Gram_pos DNA po 38.8 2.3E+02 0.005 35.3 11.4 81 103-192 6-90 (1213)
239 CHL00192 syfB phenylalanyl-tRN 37.4 90 0.0019 36.4 7.4 71 253-326 402-482 (704)
240 KOG1637 Threonyl-tRNA syntheta 37.1 52 0.0011 36.1 4.9 107 249-362 193-322 (560)
241 PF03459 TOBE: TOBE domain; I 36.7 1.8E+02 0.0039 22.1 6.9 49 108-165 6-55 (64)
242 PRK05733 single-stranded DNA-b 35.2 1.7E+02 0.0038 27.8 7.7 56 134-195 54-113 (172)
243 PRK09010 single-stranded DNA-b 35.2 2.1E+02 0.0046 27.3 8.3 58 133-196 54-116 (177)
244 cd05687 S1_RPS1_repeat_ec1_hs1 35.2 60 0.0013 25.2 4.0 51 108-166 3-54 (70)
245 cd05698 S1_Rrp5_repeat_hs6_sc5 33.9 80 0.0017 24.4 4.5 51 108-166 3-54 (70)
246 TIGR00388 glyQ glycyl-tRNA syn 33.2 28 0.00061 35.3 2.0 59 462-544 121-180 (293)
247 cd05706 S1_Rrp5_repeat_sc10 S1 32.5 1E+02 0.0022 24.1 5.0 51 108-166 6-57 (73)
248 PF11736 DUF3299: Protein of u 32.5 4.1E+02 0.0088 24.6 9.9 85 99-191 50-143 (146)
249 cd04452 S1_IF2_alpha S1_IF2_al 32.0 96 0.0021 24.3 4.7 53 108-166 6-59 (76)
250 PF08496 Peptidase_S49_N: Pept 31.2 61 0.0013 30.4 3.8 24 20-43 62-85 (155)
251 COG3689 Predicted membrane pro 30.9 1.3E+02 0.0028 30.6 6.3 92 100-196 171-262 (271)
252 cd05693 S1_Rrp5_repeat_hs1_sc1 30.9 1.2E+02 0.0026 25.9 5.4 29 108-142 6-34 (100)
253 cd05705 S1_Rrp5_repeat_hs14 S1 30.4 1.2E+02 0.0026 24.3 5.0 51 108-166 6-60 (74)
254 PF13393 tRNA-synt_His: Histid 30.1 28 0.00061 35.8 1.6 40 467-528 270-311 (311)
255 TIGR00638 Mop molybdenum-pteri 29.8 2.5E+02 0.0055 21.4 7.1 49 108-165 8-57 (69)
256 TIGR03683 A-tRNA_syn_arch alan 28.3 24 0.00051 42.3 0.7 77 253-342 60-145 (902)
257 PF12857 TOBE_3: TOBE-like dom 28.3 2.7E+02 0.0058 21.2 6.8 49 108-166 6-56 (58)
258 PF02721 DUF223: Domain of unk 27.7 3E+02 0.0065 23.0 7.3 67 127-199 3-71 (95)
259 PF04057 Rep-A_N: Replication 27.4 4E+02 0.0086 22.8 8.3 61 124-194 40-100 (101)
260 cd05691 S1_RPS1_repeat_ec6 S1_ 27.1 1.1E+02 0.0024 23.6 4.3 50 109-166 4-54 (73)
261 cd04472 S1_PNPase S1_PNPase: P 27.0 1E+02 0.0022 23.3 4.0 51 108-166 3-54 (68)
262 cd04454 S1_Rrp4_like S1_Rrp4_l 26.8 2.2E+02 0.0048 22.8 6.2 52 108-166 9-60 (82)
263 cd04497 hPOT1_OB1_like hPOT1_O 26.6 3.1E+02 0.0067 24.8 7.7 73 91-171 2-83 (138)
264 PF00970 FAD_binding_6: Oxidor 26.6 86 0.0019 26.0 3.7 62 101-169 30-94 (99)
265 PRK00629 pheT phenylalanyl-tRN 26.5 1.8E+02 0.0039 34.4 7.6 108 254-365 492-622 (791)
266 PRK13159 cytochrome c-type bio 26.4 5.5E+02 0.012 24.1 9.8 80 102-205 49-134 (155)
267 cd05697 S1_Rrp5_repeat_hs5 S1_ 26.3 1.3E+02 0.0027 23.3 4.4 51 108-166 3-54 (69)
268 PRK13902 alaS alanyl-tRNA synt 25.5 29 0.00063 41.5 0.8 77 253-342 63-148 (900)
269 COG2176 PolC DNA polymerase II 25.5 6.5E+02 0.014 31.3 11.5 61 106-172 241-307 (1444)
270 TIGR00418 thrS threonyl-tRNA s 25.4 35 0.00076 38.5 1.4 17 518-534 442-458 (563)
271 COG0587 DnaE DNA polymerase II 24.4 2.2E+02 0.0049 35.1 7.8 61 106-172 978-1043(1139)
272 COG0072 PheT Phenylalanyl-tRNA 24.3 93 0.002 36.0 4.6 78 250-327 352-442 (650)
273 cd05702 S1_Rrp5_repeat_hs11_sc 23.9 1.6E+02 0.0034 23.0 4.6 51 108-166 3-56 (70)
274 TIGR00472 pheT_bact phenylalan 23.3 1.7E+02 0.0037 34.7 6.6 105 256-364 498-628 (798)
275 PF15437 PGBA_C: Plasminogen-b 23.2 1.6E+02 0.0035 24.5 4.4 24 20-43 33-56 (86)
276 PF03843 Slp: Outer membrane l 22.9 4.9E+02 0.011 24.4 8.3 72 92-173 22-107 (160)
277 PRK05807 hypothetical protein; 22.8 1.4E+02 0.0031 27.1 4.6 67 108-190 8-75 (136)
278 PRK08582 hypothetical protein; 22.7 1.5E+02 0.0032 27.1 4.7 51 108-166 8-59 (139)
279 PF03790 KNOX1: KNOX1 domain ; 22.5 88 0.0019 23.0 2.5 29 490-518 3-31 (45)
280 PRK01584 alanyl-tRNA synthetas 21.7 52 0.0011 37.5 1.8 86 252-351 4-95 (594)
281 cd05708 S1_Rrp5_repeat_sc12 S1 21.6 1.4E+02 0.0029 23.4 3.8 53 108-166 5-57 (77)
282 COG0752 GlyQ Glycyl-tRNA synth 21.6 60 0.0013 32.6 2.0 60 462-544 125-184 (298)
283 COG1098 VacB Predicted RNA bin 20.5 2.5E+02 0.0054 25.4 5.4 67 108-189 8-75 (129)
284 cd05685 S1_Tex S1_Tex: The C-t 20.4 1.7E+02 0.0038 21.9 4.1 51 108-166 3-54 (68)
No 1
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-147 Score=1111.41 Aligned_cols=525 Identities=60% Similarity=0.916 Sum_probs=501.2
Q ss_pred ccCCcccccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcCCcCccchhhhhccCCCCCCcccccccCcce
Q 008808 13 EVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREW 92 (553)
Q Consensus 13 ~~~~~~~~~sk~~~kk~~k~~~k~~k~a~~~~~~~~~~~~~~~~~d~~~~~yg~~~~~~~~~~~~pyphkf~~~~~~~~~ 92 (553)
..++.|+ +|||++||.+|+++|++||.+++..++ ++..++++|...++||++++.++++ .++..|
T Consensus 6 ~~gE~gk-~SKK~~kk~a~~~eK~~~k~e~~~~~~--~a~~~~~ed~~~~~yg~~~l~~s~~------------~~~~~~ 70 (533)
T KOG0556|consen 6 ALGEDGK-LSKKALKKLAKKLEKLRKKQEREETAA--KAREAEAEDYAKERYGDLSLIQSQS------------KEGREL 70 (533)
T ss_pred hcccccc-ccHHHHHHHHHHHHHHHhhhhhhhhhh--hhhhhhhhhHHhhhcCccccccccc------------ccccce
Confidence 3344555 999999999999999999988774222 2233566788999999999999998 678899
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCC-CcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPD-SVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~-~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
+++.+|+.+..|+.||||||||+.|.+| |+||++|||++.+|||++..+.. .+|++|+||+++|+.||||+|.|+|++
T Consensus 71 ~~v~dl~~~~~~~~V~vRgrVhtsr~~G-K~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k 149 (533)
T KOG0556|consen 71 TDVSDLDESNDGSEVLVRGRVHTSRLKG-KLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVK 149 (533)
T ss_pred eehhhhhhhcCCceEEEEEEEeeccccc-eEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEec
Confidence 9999999999999999999999999999 99999999999999999998764 389999999999999999999999999
Q ss_pred CCCccCCCcee-EEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 172 PDVEIKGATQQ-VEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 172 ~~~~~~~~t~~-~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
++.++++||++ +||+|.+|+|||.+.+. |++++|++|++.+++++.+....+.++++||||+||+||||||++|+|||
T Consensus 150 ~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtptnqAiFr 229 (533)
T KOG0556|consen 150 VKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTPTNQAIFR 229 (533)
T ss_pred CCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccccchheee
Confidence 99999999977 99999999999999999 99999999988777666555567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~ 329 (553)
+++.|+.+||+||..+||+|||||+|+++++||||++|.|.||+.++||+|||||||||+|||+|+||||||||||||+|
T Consensus 230 iq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdS 309 (533)
T KOG0556|consen 230 IQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVSYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDS 309 (533)
T ss_pred hHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEEEeccCcchhhcChHHHHHHHHhcchhheeeecceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHH
Q 008808 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409 (553)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~ 409 (553)
|||||++||+.||+||+|..||+|+|+++.+|+.+||+.|.++|+++|+.++.+||+++++|.++..+++|.|+++||++
T Consensus 310 nthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~~~~lrl~~~e~v~mLre 389 (533)
T KOG0556|consen 310 NTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKFLEPPLRLTFKEGVAMLRE 389 (533)
T ss_pred chhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCceEeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHH
Q 008808 410 AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEF 489 (553)
Q Consensus 410 ~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~ 489 (553)
+|+++.+.+||+|+.|+.||++|+++|++||||+++||.++|||||||+++||.+++|||+||+|.||.||+||+|||+.
T Consensus 390 aGvE~g~~dDlsTe~Ek~LG~lV~eky~tdfyildkyP~avRPFYTmpd~~~p~ySnSyD~fmRGeEIlSGAQRIhdpe~ 469 (533)
T KOG0556|consen 390 AGVEMGDEDDLSTESEKKLGQLVREKYDTDFYILDKYPLAVRPFYTMPDPENPRYSNSYDFFMRGEEILSGAQRIHDPEL 469 (533)
T ss_pred cCcccCCccccCChhHHHHHHHHHHHhCCcEEEEccCccccccccccCCCCCCCcccchhheechhhhhccccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 490 LAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 490 l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
|.+|+++||+|+..+..||++|+||+|||||+|||+||++|+++|++|||.+++|||||+||+|
T Consensus 470 L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~SlFPRDPkRL~P 533 (533)
T KOG0556|consen 470 LVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSLFPRDPKRLTP 533 (533)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhccCCCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=2e-131 Score=1075.81 Aligned_cols=528 Identities=75% Similarity=1.167 Sum_probs=487.6
Q ss_pred cccccCCcccccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcCCcCccchhhhhccCCCCCCcccccccC
Q 008808 10 VQEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNG 89 (553)
Q Consensus 10 ~~~~~~~~~~~~sk~~~kk~~k~~~k~~k~a~~~~~~~~~~~~~~~~~d~~~~~yg~~~~~~~~~~~~pyphkf~~~~~~ 89 (553)
.++..|+.++.+|||++||++|+++|++|++++++++++ ..+++|...++||++|+.|+++. .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~yg~~~~~~~~~~-----------~~~ 66 (530)
T PLN02850 2 SQEAVEESGEKISKKAAKKAAAKAEKLRREATAKAAAAS----LEDEDDPLASNYGDVPLEELQSK-----------VTG 66 (530)
T ss_pred CcccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhh----hccccchhhccCCcccccccccc-----------cCC
Confidence 355677788889999999999999999887765432211 12256788999999999888741 345
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.+|++|++|+..+.|++|+|+||||++|.+| |++|++|||++++||||+..+...++++|++|+..|+.||+|+|+|+|
T Consensus 67 ~~~~~i~~l~~~~~g~~V~v~Grv~~~R~~g-k~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v 145 (530)
T PLN02850 67 REWTDVSDLGEELAGSEVLIRGRVHTIRGKG-KSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVV 145 (530)
T ss_pred ceEeEhhhcchhhCCCEEEEEEEEEEEccCC-CeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEE
Confidence 6899999999999999999999999999999 799999999999999999877545789999999999999999999999
Q ss_pred ecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHH
Q 008808 170 SVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIF 248 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if 248 (553)
+.++.+++++|+++||++++|+|||+|.++ |++++|+++++.+.++....+..++++++++||+|||||||++.+++||
T Consensus 146 ~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaif 225 (530)
T PLN02850 146 SVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIF 225 (530)
T ss_pred EccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHHHHH
Confidence 998888889999999999999999999888 9999999886654433222344567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCC
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~ 328 (553)
++||.|++.||+||.++||+||+||+|+++++|||+++|.|+|||.++||+|||||||||+++||++||||||||||||+
T Consensus 226 rirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~ 305 (530)
T PLN02850 226 RIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAED 305 (530)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeeeccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHH
Q 008808 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (553)
Q Consensus 329 ~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~ 408 (553)
++|+|||||||||||||+|.++|+|+|+++|+|+.+++..+.++|..+++.+..++|+..+++.+++++++|.||+++|+
T Consensus 306 s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~ 385 (530)
T PLN02850 306 SFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLK 385 (530)
T ss_pred CCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHH
Confidence 99999999999999999999899999999999999999999999988998888888998888888999999999999999
Q ss_pred HcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHH
Q 008808 409 DAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPE 488 (553)
Q Consensus 409 ~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~ 488 (553)
+.|++.++..|++++.|+.||++|+++|++|+|||+|||.+++|||+|++++||++++|||||++|+||+|||+|+|||+
T Consensus 386 ~~g~~~~~~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G~EI~~G~qr~~d~~ 465 (530)
T PLN02850 386 EAGVEVDPLGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRGEEIISGAQRVHDPE 465 (530)
T ss_pred HcCCCCCCCCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCchhccccCCCCCeEEEEEEEeCCEEEeccceecCCHH
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 489 FLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 489 ~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|++|++++|+|+..++|||+|++||+|||||||||||||+|++||++|||+|++|||||+||+|
T Consensus 466 ~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiGlERLvM~l~g~~nIr~v~~FPR~p~rl~p 530 (530)
T PLN02850 466 LLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRLAP 530 (530)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCCchheEeecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 3
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.1e-126 Score=1035.12 Aligned_cols=509 Identities=47% Similarity=0.788 Sum_probs=460.3
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcCCcCccchhhhhccCCCCCCcccccccCcceEEec
Q 008808 17 SSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVG 96 (553)
Q Consensus 17 ~~~~~sk~~~kk~~k~~~k~~k~a~~~~~~~~~~~~~~~~~d~~~~~yg~~~~~~~~~~~~pyphkf~~~~~~~~~~~i~ 96 (553)
..+..+|+++||++|+++|++++++++++++.++ .++|...++||.+|+.|+++ .+.++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~------------~~~~~~~~i~ 69 (550)
T PTZ00401 6 ADAGAPAVEKKQSDKEARKAARLAEEKARAAEKA----ALVEKYKDVFGAAPMVQSTT------------YKSRTFIPVA 69 (550)
T ss_pred cccCcchhhHHHHHHHHHhHHHHHHHHHHHHhhh----hccchhhccCCccccccccc------------cCCCceEEHH
Confidence 3456789999999999999999888764332221 14688889999999999887 6678899999
Q ss_pred cccCCC-CCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc
Q 008808 97 ALNGSL-KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE 175 (553)
Q Consensus 97 ~l~~~~-~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~ 175 (553)
+|+..+ .|++|+|+|||+++|.+| |++|++|||++++||||++.+. .++++|++|+..|+.||+|+|+|+|+.+..+
T Consensus 70 ~l~~~~~~g~~V~v~Grv~~~R~~G-k~~Fl~LRd~~~~iQ~v~~~~~-~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~ 147 (550)
T PTZ00401 70 VLSKPELVDKTVLIRARVSTTRKKG-KMAFMVLRDGSDSVQAMAAVEG-DVPKEMIDFIGQIPTESIVDVEATVCKVEQP 147 (550)
T ss_pred HCCccccCCCEEEEEEEEEEEecCC-CeEEEEEEeCCcCEEEEEECCC-ccCHHHHHHHhcCCCCCEEEEEEEEEecCcc
Confidence 998777 899999999999999999 8999999999999999998653 3688999999999999999999999998777
Q ss_pred cCCCce-eEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHH
Q 008808 176 IKGATQ-QVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQ 253 (553)
Q Consensus 176 ~~~~t~-~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~ 253 (553)
+++++. ++||++++|+|||+|.++ |++++|+++++. .....++++|||+|||||||++.++++|++||+
T Consensus 148 ~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~---------~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~ 218 (550)
T PTZ00401 148 ITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKES---------DEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSR 218 (550)
T ss_pred CCCCCCccEEEEeeEEEEEeCCCCCCCCCccccccccc---------ccccccChhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 666554 599999999999999888 999999876433 123457899999999999999999999999999
Q ss_pred HHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCC
Q 008808 254 VGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333 (553)
Q Consensus 254 i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~r 333 (553)
|+++||+||.++||+|||||+|+++++|||+++|.|+|||.++||+|||||||||+++||++||||||||||||+++|+|
T Consensus 219 i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~R 298 (550)
T PTZ00401 219 VCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHR 298 (550)
T ss_pred HHHHHHHHHHHCCCEEEeCCccccCCCCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCC---------------------
Q 008808 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK--------------------- 392 (553)
Q Consensus 334 Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~--------------------- 392 (553)
||||||||||||+|.++|+|+|+++|+|+.+++..+.++ ..+++.+..++|++++.|.
T Consensus 299 Hl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~-~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 377 (550)
T PTZ00401 299 HLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH-TKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPT 377 (550)
T ss_pred CccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc-chhhhhhccccccccccccccHHHHHhcCCCcccccccch
Confidence 999999999999998899999999999999999999876 4466666666666554221
Q ss_pred -----------CCCcccCHHHHHHHHHHcC-CCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCC
Q 008808 393 -----------PKTLRLTFEEGVQMLKDAG-VEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHD 460 (553)
Q Consensus 393 -----------~~~~~i~~~ea~~ll~~~g-~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~ 460 (553)
.+++||+|.||++||++.| .++++.+|+++++|++|+++|+++|++|+||+++||.+++|||+|++++
T Consensus 378 ~~l~~~~~~~~~~~~rl~y~eai~lL~~~~~~~~~~~~dl~~~~E~~L~~~v~~~~~~~~fI~d~yP~~~rpFY~~~~~~ 457 (550)
T PTZ00401 378 DKYQARVHNMDSRMLRINYMHCIELLNTVLEEKMAPTDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKD 457 (550)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHHhcccCCCcccccCchHHHHHHHHHHHhcCCCEEEECCCChhhCchhcCcCCC
Confidence 1388999999999999986 4566778999999999999999999999877667999999999999999
Q ss_pred CCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccc
Q 008808 461 NSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRK 540 (553)
Q Consensus 461 ~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrd 540 (553)
||++++|||||++|+||+|||+|+|||++|++|++++|+|+..++|||+|++||+|||||||||||||+|++||+.|||+
T Consensus 458 dp~~s~~fDlf~~G~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~ 537 (550)
T PTZ00401 458 DERFTNSYDMFIRGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRL 537 (550)
T ss_pred CCCEEEEEEEEeCCEEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCC
Q 008808 541 TSLYPRDPLRIAP 553 (553)
Q Consensus 541 v~~FPr~p~rl~p 553 (553)
|++|||||+||+|
T Consensus 538 v~lFPRdp~rl~p 550 (550)
T PTZ00401 538 ASLFPRDPQRTTP 550 (550)
T ss_pred eecCCCCCCCCCC
Confidence 9999999999998
No 4
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-115 Score=893.98 Aligned_cols=498 Identities=23% Similarity=0.379 Sum_probs=425.6
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHH------HhhhccccccCCCcCCcCccchhhhhc----cCCCCCCcccccc
Q 008808 18 SQSISKKAAKKEAAKKAKEERRKEAEAAAS------AASALSIEEEGPLANNYGDVPLQELQS----VNDPQTGKWSEAV 87 (553)
Q Consensus 18 ~~~~sk~~~kk~~k~~~k~~k~a~~~~~~~------~~~~~~~~~~d~~~~~yg~~~~~~~~~----~~~pyphkf~~~~ 87 (553)
..++||+++||+.+..+|+..++++++... .+......+++.++++|.++|.+.+++ +.|||||||++++
T Consensus 5 s~~~sk~~lkrr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~qy~~~R~r~i~~l~~s~~~Pyphkf~vs~ 84 (560)
T KOG1885|consen 5 SEMLSKNELKRRSLAKQKALEKAKKASSKAAAPSVAAAKSVSKSEETSDPEQYFKIRSRAIEELRASGLNPYPHKFHVSI 84 (560)
T ss_pred hhhhhHHHHHHhHHHhhHHHHHHHhhhhccCCCccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCCCcchhhccc
Confidence 378899999999999888777666553211 112234556788999999999999876 6899999999999
Q ss_pred cCcce-EEeccc--cCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEE
Q 008808 88 NGREW-TVVGAL--NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (553)
Q Consensus 88 ~~~~~-~~i~~l--~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (553)
+..+| .++..+ .++..+..|+|+||||++|.+|+||+|++|++++.+||+|++++....+.++.+..+.|++||||+
T Consensus 85 si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig 164 (560)
T KOG1885|consen 85 SIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIG 164 (560)
T ss_pred cHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEe
Confidence 99765 233333 346677889999999999999999999999999999999999986544566777888999999999
Q ss_pred EEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeecc-H
Q 008808 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRT-L 242 (553)
Q Consensus 165 V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~-~ 242 (553)
|.|.++++. +++++|.++++.+||+|++| |- .++++.|.|+|+++|||||.. +
T Consensus 165 ~~G~pgrt~------~gELSi~~~~~~lLspcLh~lP~-------------------~~~gLkD~EtRyrqRylDlilN~ 219 (560)
T KOG1885|consen 165 VSGYPGRTK------SGELSIIPNEIILLSPCLHMLPH-------------------EHFGLKDKETRYRKRYLDLILNP 219 (560)
T ss_pred eecCCCcCC------CceEEEeecchheecchhccCCh-------------------hhcCCCcHHHHHHHHHHHHHcCH
Confidence 999988765 45899999999999999999 83 356788999999999999987 7
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHhhhcccCCCceeEEE
Q 008808 243 ANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFET 320 (553)
Q Consensus 243 ~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~lk~li~~g~~rVfeI 320 (553)
.++..|++|++||++||.||+++||+||+||+|+..+.+.-|.||.+ |.+++++|||+|||||+|||++||++|||||
T Consensus 220 ~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGldrVYEI 299 (560)
T KOG1885|consen 220 EVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVYEI 299 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecccccCcceeeeechHHHHHHHHhccHHHHHHH
Confidence 88999999999999999999999999999999986543334569987 4588999999999999999999999999999
Q ss_pred eceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCH
Q 008808 321 GPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF 400 (553)
Q Consensus 321 g~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 400 (553)
|++||||++ +.+||||||+|||||||+ ||+|+|+++|+|++.++..+.+.|+..++..+...+.-.++|.+||.|+++
T Consensus 300 Gr~FRNEGI-DlTHNPEFTTcEfY~AYa-dy~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~m 377 (560)
T KOG1885|consen 300 GRQFRNEGI-DLTHNPEFTTCEFYMAYA-DYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEM 377 (560)
T ss_pred HHHhhhcCc-ccccCCCcchHHHHHHHh-hHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeH
Confidence 999999998 899999999999999998 699999999999999999999999887776655555556899999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCcH--------------------------HHHHHhHHHHHHhCCccEEEeccCCcCCCCC
Q 008808 401 EEGVQMLKDAGVEIDPLGDLNTE--------------------------SERKLGQLVLEKYGTEFYILHRYPLAVRPFY 454 (553)
Q Consensus 401 ~ea~~ll~~~g~~~~~~~dl~~~--------------------------~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy 454 (553)
-+.++ ++.|+++++++++.++ ..++.|..++.++-.|.||+ ++|..++|+
T Consensus 378 i~~L~--k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~cvnPTFi~-~hP~imSPL- 453 (560)
T KOG1885|consen 378 IEELE--KELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTCVNPTFII-DHPQIMSPL- 453 (560)
T ss_pred HHHHH--HHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccccCCCeeEc-CCchhcCcc-
Confidence 88775 5667766654444332 23444444556677777765 689999999
Q ss_pred CcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCCCcceeeecHH
Q 008808 455 TMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAPPHGGFGVGLE 526 (553)
Q Consensus 455 ~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~pP~~G~GiGid 526 (553)
++++++++++|+|||||++|.||||+|+|+|||..|++||.+ .|.|++. +++||+||+|||||+||||||||
T Consensus 454 AK~hrs~~glteRFElFi~~kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGID 533 (560)
T KOG1885|consen 454 AKYHRSKAGLTERFELFIAGKEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGID 533 (560)
T ss_pred ccccccccchhhHHHHhhhhHHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchh
Confidence 789999999999999999999999999999999999999963 5777653 69999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccC
Q 008808 527 RVVMLFCGLNNIRKTSLYPR 546 (553)
Q Consensus 527 RLvm~l~g~~nIrdv~~FPr 546 (553)
||+|+||+..|||||++||-
T Consensus 534 RL~MllTds~~I~EVL~Fp~ 553 (560)
T KOG1885|consen 534 RLVMLLTDSNNIREVLLFPA 553 (560)
T ss_pred hhhhhhcCCcchhheeeccc
Confidence 99999999999999999995
No 5
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-108 Score=859.62 Aligned_cols=426 Identities=38% Similarity=0.636 Sum_probs=395.0
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.+.++.....|+.|+|+|||+++|.+| +++|+.|||+++.||||+.++. ..+++++ ++.|+.||+|.|+|+|+..
T Consensus 5 ~~i~di~~~~~~~~V~v~GWV~~~R~~g-~i~Fi~lrDgsg~iQ~v~~~~~--~~~~~~~-~~~L~~es~v~V~G~v~~~ 80 (435)
T COG0017 5 TYIKDIKPHVGGQEVTVRGWVHNKRDLG-KIIFLVLRDGSGFIQAVVPKNK--VYEELFK-AKKLTLESSVVVTGIVKAS 80 (435)
T ss_pred eeHHhhhccCCCcEEEEEEEeeeecccC-CeEEEEEEcCCcEEEEEEECCC--CcHHHhh-hhcCCCccEEEEEEEEEcC
Confidence 5566676666669999999999999999 8999999999999999999752 3567777 8999999999999999988
Q ss_pred CCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHH
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~R 251 (553)
++ +.|.+||++++|.|++.+..+ |++.+.. ++.|+|+++||||||++..+++|++|
T Consensus 81 ~~----a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~-------------------~~~e~lld~rhL~lR~~~~~Av~kir 137 (435)
T COG0017 81 PK----APQGFELQVEKIEVLGEADPPYPIDKKEH-------------------SELETLLDNRHLDLRTPKIQAVFKIR 137 (435)
T ss_pred CC----CCCCEEEEEEEEEEeeccCCCCCcCcccc-------------------cCHHHHHhchheeccccchHHHHhHH
Confidence 74 456799999999999999666 8765432 26899999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCC
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t 331 (553)
|.|++++|+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||+++++ ++|||+|||+||||+++|
T Consensus 138 s~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v~yf~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T 216 (435)
T COG0017 138 SSILRAIREFFYENGFTEVHTPIITASATEGGGELFKVDYFDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNT 216 (435)
T ss_pred HHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEEeecCcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998777 999999999999999999
Q ss_pred CCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccC--CCCCcccCHHHHHHHHHH
Q 008808 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLKD 409 (553)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~i~~~ea~~ll~~ 409 (553)
.|||.||||+|.||+|++ ++|+|+++|+|++++++.+.++|+.+++.++. ....++- ..||+||+|.||+++|++
T Consensus 217 ~RHL~EF~~ld~Emaf~~-~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~~l~~~~~~pf~ritY~eAieiL~~ 293 (435)
T COG0017 217 RRHLSEFWMLDPEMAFAD-LNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNSELKRPESAPFPRITYKEAIEILEE 293 (435)
T ss_pred cchhhhHheecceeccCc-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cchhhcccccCCccEEEHHHHHHHHHh
Confidence 999999999999999985 99999999999999999999999999988764 2223333 357999999999999999
Q ss_pred cCCC-CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEEeeceeccCCH
Q 008808 410 AGVE-IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIP 487 (553)
Q Consensus 410 ~g~~-~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~ 487 (553)
.|.+ +.|++|+++++|+.|+ ++++.|++||+|||..++|||+|+++++|+++.+|||+++| +||+||+||+||+
T Consensus 294 ~~~e~~~~GdDl~~e~Er~l~----e~~~~~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~ 369 (435)
T COG0017 294 KGFEKVEWGDDLGTEHERYLG----EEYFKPPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDY 369 (435)
T ss_pred cCCcccCCCCccCCHHHHHHH----HHhCCCcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceeccccH
Confidence 9998 8999999999999998 67888889999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 488 EFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 488 ~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+.|.+|++++|+|++.++|||++++||+|||||||||+|||+|++||++|||||++|||+|+|+.|
T Consensus 370 d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r~~p 435 (435)
T COG0017 370 DLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRLYP 435 (435)
T ss_pred HHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988
No 6
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=1.3e-108 Score=897.54 Aligned_cols=497 Identities=23% Similarity=0.360 Sum_probs=408.0
Q ss_pred CCcccccChHHHHHHHHHHHHHHHHHHHHHHHHH----h-h-----hccccccCCCcCCcCccchhhhhc----cCCCCC
Q 008808 15 DSSSQSISKKAAKKEAAKKAKEERRKEAEAAASA----A-S-----ALSIEEEGPLANNYGDVPLQELQS----VNDPQT 80 (553)
Q Consensus 15 ~~~~~~~sk~~~kk~~k~~~k~~k~a~~~~~~~~----~-~-----~~~~~~~d~~~~~yg~~~~~~~~~----~~~pyp 80 (553)
+++++++||+++||++|+++++++++++++++++ + + ...++.++.++++|..+|...+++ |.||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~pyp 81 (553)
T PLN02502 2 ESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEALRAKGVEPYP 81 (553)
T ss_pred CCCcccccHHHHHHHHhhhhhhHHHhhhHhhcccccccccCccccccccccccccCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4567899999999999999998888876643211 0 0 011122245667888888877765 789999
Q ss_pred CcccccccCcce-EEeccc--cCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcc-hHHHHHHhc
Q 008808 81 GKWSEAVNGREW-TVVGAL--NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS-KEMVRFVRS 156 (553)
Q Consensus 81 hkf~~~~~~~~~-~~i~~l--~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~-~~~~~~~~~ 156 (553)
|+|.++++..++ .++.++ ++...|++|+|+|||+++|.+| |++|++|||+++.||||++.+....+ +.+.++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G-k~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~ 160 (553)
T PLN02502 82 YKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG-KLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSL 160 (553)
T ss_pred CCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC-CeEEEEEecCCccEEEEEECccccchhHHHHHHHhC
Confidence 999999887654 334433 3456799999999999999999 99999999999999999987632111 235566677
Q ss_pred CCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCcccccccc
Q 008808 157 LSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNR 235 (553)
Q Consensus 157 l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R 235 (553)
|+.||+|+|+|++++++ ++++||.+++|.+||+|+.+ |.... +.++.++|+++|
T Consensus 161 l~~gdiV~V~G~~~~t~------~gelel~~~~i~vLs~~l~plP~k~~-------------------~~~d~e~r~r~R 215 (553)
T PLN02502 161 VDRGDIVGVTGTPGKTK------KGELSIFPTSFEVLTKCLLMLPDKYH-------------------GLTDQETRYRQR 215 (553)
T ss_pred CCCCcEEEEEEEEEecC------CCCEEEEEeEEEEEeccCCCCCcccc-------------------cccchhhhccch
Confidence 99999999999998764 46899999999999999888 86432 347899999999
Q ss_pred ceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHhhhcccC
Q 008808 236 VIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICG 312 (553)
Q Consensus 236 ~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~lk~li~~ 312 (553)
||||+ ++.++++|++||+|+++||+||+++||+||+||+|++.+.+++|.+|.+ +||+.++||+||||||||+|++|
T Consensus 216 yLdl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~ 295 (553)
T PLN02502 216 YLDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVG 295 (553)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCcceeeecCHHHHHHHHHHh
Confidence 99996 6999999999999999999999999999999999987553334568987 78999999999999999999999
Q ss_pred CCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCC
Q 008808 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK 392 (553)
Q Consensus 313 g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~ 392 (553)
|++||||||||||||+++ .|||||||||||||+|+ ||+|+|+++|+||++++..+.+.++..+ ....++|.
T Consensus 296 g~~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~-d~~dlm~~~E~li~~i~~~v~~~~~~~~-------~~~~i~~~ 366 (553)
T PLN02502 296 GFERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYA-DYNDMMELTEEMVSGMVKELTGSYKIKY-------HGIEIDFT 366 (553)
T ss_pred ccCCEEEEcCeeeCCCCC-CccccceeehhhhhhcC-CHHHHHHHHHHHHHHHHHHHhccccccc-------CCccccCC
Confidence 999999999999999985 59999999999999997 7999999999999999999987765432 33456777
Q ss_pred CCCcccCHHHHHHHH----------------------HHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcC
Q 008808 393 PKTLRLTFEEGVQML----------------------KDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAV 450 (553)
Q Consensus 393 ~~~~~i~~~ea~~ll----------------------~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~ 450 (553)
.||.|++|.|+++.+ ++.|+++++..++......+++.+|++++..|+| |+|||..+
T Consensus 367 ~p~~rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l~~PtF-V~dyP~~~ 445 (553)
T PLN02502 367 PPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETLVQPTF-VLDHPVEM 445 (553)
T ss_pred CCceeccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCCEE-EECCcccc
Confidence 788898888876522 1223333333334445566777888888877755 56799999
Q ss_pred CCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCCh--hcHHHHHHHhhcCCCCcceee
Q 008808 451 RPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDV--KTISTYIDSFRYGAPPHGGFG 522 (553)
Q Consensus 451 ~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~--~~~~~yl~a~~~G~pP~~G~G 522 (553)
+|| ++++++||++++|||||++|+||||||+|+|||.+|++||.+ .|.+. ..+++||+||+||||||||||
T Consensus 446 spl-ak~~~~~p~~~erFELfi~G~Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~gG~G 524 (553)
T PLN02502 446 SPL-AKPHRSKPGLTERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGGWG 524 (553)
T ss_pred Ccc-cccCCCCCCeEEEEEEEeCCeEEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCceEE
Confidence 999 679999999999999999999999999999999999998863 23333 235889999999999999999
Q ss_pred ecHHHHHHHHcCCCCccccccccCCC
Q 008808 523 VGLERVVMLFCGLNNIRKTSLYPRDP 548 (553)
Q Consensus 523 iGidRLvm~l~g~~nIrdv~~FPr~p 548 (553)
||||||+|+|||++|||||++||+..
T Consensus 525 iGiDRLvMlltg~~sIrdVi~FP~~k 550 (553)
T PLN02502 525 LGIDRLVMLLTDSASIRDVIAFPAMK 550 (553)
T ss_pred ehHHHHHHHHcCCcchheeecCCcCC
Confidence 99999999999999999999999754
No 7
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-108 Score=879.41 Aligned_cols=433 Identities=41% Similarity=0.721 Sum_probs=401.0
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.+++|+...+|++|+|+|||+++|.+| |++|++|||+++.||||++.+. . ++++++++.|+.||+|.|+|+|+.
T Consensus 4 ~~~~~~l~~~~~g~~V~i~GrV~~~R~~g-k~~Fl~LrD~~g~iQ~v~~~~~--~-~~~~~~~~~L~~gs~V~v~G~v~~ 79 (437)
T PRK05159 4 RHLTSELTPELDGEEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQVVVKKKV--D-EELFETIKKLKRESVVSVTGTVKA 79 (437)
T ss_pred eeEhhhCChhhCCCEEEEEEEeEeeecCC-CeEEEEEEcCCcEEEEEEeCCc--c-HHHHHHHhCCCCCcEEEEEEEEEc
Confidence 47888999889999999999999999999 8999999999999999998763 2 678889999999999999999998
Q ss_pred CCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHH
Q 008808 172 PDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~ 250 (553)
+++ ..+++||++++|+|||+|..+ |+...+.. ..+.++|++|||||||++.++++|++
T Consensus 80 ~~~----~~~~~el~~~~i~vls~a~~~~P~~~~~~~-----------------~~~~~~~~~~r~Ldlr~~~~~~~l~~ 138 (437)
T PRK05159 80 NPK----APGGVEVIPEEIEVLNKAEEPLPLDISGKV-----------------LAELDTRLDNRFLDLRRPRVRAIFKI 138 (437)
T ss_pred CCC----CCCCEEEEEeEEEEEeCCCCCCCCCccccc-----------------cCCHHHHhhCcceecCCHHHHHHHHH
Confidence 753 345799999999999999877 87654321 24689999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCC
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~ 330 (553)
||+|++.+|+||.++||+||+||+|++++++||++.|.++|||.++||+||||||||++++||++||||||||||||+++
T Consensus 139 Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~ 218 (437)
T PRK05159 139 RSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHN 218 (437)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeEEecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCC
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHHc
Q 008808 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (553)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~ 410 (553)
|+|||||||||||||+|.++|+++|+++|+|+.++++.+.++++.+++.++..++ ....||+++||.||++++++.
T Consensus 219 t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~----~~~~~f~rit~~eA~~~l~~~ 294 (437)
T PRK05159 219 TSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP----VPETPIPRITYDEAIEILKSK 294 (437)
T ss_pred CcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCC----cCCCCceEeEHHHHHHHHHHc
Confidence 8899999999999999985599999999999999999999888887776553322 133589999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHH
Q 008808 411 GVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFL 490 (553)
Q Consensus 411 g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l 490 (553)
|++.++..|++++.|+.|+++++++++.+++||+|||..++|||+++++++|++++|||||++|+||+|||+|+|||++|
T Consensus 295 ~~~~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~g~Ei~~g~~r~~d~~~~ 374 (437)
T PRK05159 295 GNEISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGLEITSGGQRIHRYDML 374 (437)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEEEEEEEEECCEEEeeCeEEcCCHHHH
Confidence 98888888899999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 491 AERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 491 ~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
++|++++|+++..++|||+|++||+|||||||||||||+|++||+.|||||++|||+|+||+|
T Consensus 375 ~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~FPr~~~~~~p 437 (437)
T PRK05159 375 VESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPRDRHRLTP 437 (437)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 8
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=7.7e-107 Score=868.25 Aligned_cols=425 Identities=41% Similarity=0.700 Sum_probs=389.1
Q ss_pred eccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC
Q 008808 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (553)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~ 174 (553)
+++|+..+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. +++++++++..|+.||+|.|+|+|+.++.
T Consensus 3 ~~~l~~~~~g~~v~i~G~v~~~R~~g-~~~Fi~lrd~~g~iQ~v~~~~~--~~~~~~~~~~~l~~~s~v~v~G~v~~~~~ 79 (428)
T TIGR00458 3 SADIKPEMDGQEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQITAPAKK--VSKNLFKWAKKLNLESVVAVRGIVKIKEK 79 (428)
T ss_pred hhhCchhhCCCEEEEEEEEEEEecCC-CcEEEEEEeCCeeEEEEEECCc--CCHHHHHHHhCCCCCcEEEEEEEEEecCC
Confidence 55677788899999999999999999 7999999999999999998753 56788999999999999999999986542
Q ss_pred ccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHH
Q 008808 175 EIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQ 253 (553)
Q Consensus 175 ~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~ 253 (553)
+++++||.+++++|||+|..+ |++.++.. ..+.++|++|||||||++..+++|++||+
T Consensus 80 ----~~~~~el~~~~i~vl~~~~~~lP~~~~~~~-----------------~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~ 138 (428)
T TIGR00458 80 ----APGGFEIIPTKIEVINEAKEPLPLDPTEKV-----------------PAELDTRLDYRFLDLRRPTVQAIFRIRSG 138 (428)
T ss_pred ----CCCcEEEEEeEEEEEecCCCCCCCCccccC-----------------CCCHHHHhhhhhhhhCCHHHHHHHHHHHH
Confidence 356799999999999999877 98775532 25789999999999999999999999999
Q ss_pred HHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCC
Q 008808 254 VGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333 (553)
Q Consensus 254 i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~r 333 (553)
|++.+|+||.++||+||+||+|+++++|||++.|.++||+.++||+||||||||++++||++||||||||||||+++|+|
T Consensus 139 i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~r 218 (428)
T TIGR00458 139 VLESVREFLAEEGFIEVHTPKLVASATEGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHR 218 (428)
T ss_pred HHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHHcCCC
Q 008808 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVE 413 (553)
Q Consensus 334 Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~g~~ 413 (553)
||||||||||||+|. +|+|+|+++|+||.+++..+.++++.+++..+..++ ....||+||||.||+++|++.|++
T Consensus 219 Hl~EFt~lE~e~a~~-~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~~~----~~~~pf~rity~eA~~~l~~~g~~ 293 (428)
T TIGR00458 219 HLNEATSIDIEMAFE-DHHDVMDILEELVVRVFEDVPERCAHQLETLEFKLE----KPEGKFVRLTYDEAIEMANAKGVE 293 (428)
T ss_pred chheeeEeeeeeccC-CHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccccc----cCCCCceEEEHHHHHHHHHHcCCC
Confidence 999999999999997 799999999999999999999888877654332211 013589999999999999999998
Q ss_pred CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHH
Q 008808 414 IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAER 493 (553)
Q Consensus 414 ~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r 493 (553)
.++..|++...|+.|++ +++.|+ ||+|||.+++|||+++++++|++++|||||++|+||+|||+|+||+++|++|
T Consensus 294 ~~~~~~l~~~~E~~l~~----~~~~p~-fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~g~Ei~~g~~r~~~~~~l~~~ 368 (428)
T TIGR00458 294 IGWGEDLSTEAEKALGE----EMDGLY-FITDWPTEIRPFYTMPDEDNPEISKSFDLMYRDLEISSGAQRIHLHDLLVER 368 (428)
T ss_pred CCCccccchHHHHHHHH----HhCCCE-EEEeCchhcCcccccccCCCCCEEEEEEEEeCCeEEeeCchhcCCHHHHHHH
Confidence 88888899999999984 456665 4667999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 494 AQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 494 ~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
++++|+++..++|||+|++||+|||||||||||||+|++||+.|||||++|||+|+|+.|
T Consensus 369 ~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr~~~r~~p 428 (428)
T TIGR00458 369 IKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDRKRLTP 428 (428)
T ss_pred HHHcCCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 9
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=6e-104 Score=857.02 Aligned_cols=436 Identities=24% Similarity=0.424 Sum_probs=368.7
Q ss_pred cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|.|||||+|.++++..++ .++.+++. ...|++|+|+|||+++|.+| |++|++|||++++||+|++.+. +++++
T Consensus 20 ~~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g-k~~F~~l~D~~g~iQ~~~~~~~--~~~~~ 96 (496)
T TIGR00499 20 GNNPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG-KATFITLQDESGQIQLYVNKDD--LPEDF 96 (496)
T ss_pred CCCCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC-CeEEEEEEcCCccEEEEEECCc--CcHHH
Confidence 679999999999887553 23333321 24589999999999999998 9999999999999999998763 45667
Q ss_pred HHHHh-cCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCc
Q 008808 151 VRFVR-SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQ 228 (553)
Q Consensus 151 ~~~~~-~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 228 (553)
.++.. .|+.||+|+|+|+|.+++ +|++||++++|.+||+|..+ |.... +.++.
T Consensus 97 ~~~~~~~l~~gd~V~v~G~~~~t~------~gelel~~~~i~ilsk~~~plP~k~~-------------------~~~d~ 151 (496)
T TIGR00499 97 YEFDEYLLDLGDIIGVTGYPFKTK------TGELSVHVTELQILTKALRPLPDKFH-------------------GLTDQ 151 (496)
T ss_pred HHHHHhcCCCCCEEEEEEEEEECC------CCcEEEEeeEEEEEecCCCCCCcccc-------------------ccCCh
Confidence 77765 489999999999998764 56899999999999999887 86432 23689
Q ss_pred cccccccceeecc-HHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecC--CCCceecccChhhH
Q 008808 229 DTRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLH 305 (553)
Q Consensus 229 e~Rl~~R~LdLr~-~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~~L~~SPql~ 305 (553)
|+||++||||||+ +.++++|++||+|+++||+||.++||+||+||+|++.+++++|+||.+.| |+.++||+||||||
T Consensus 152 e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~~~yLriSpELy 231 (496)
T TIGR00499 152 ETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPELY 231 (496)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCCceEEecCHHHH
Confidence 9999999999995 89999999999999999999999999999999998754333346899855 99999999999999
Q ss_pred hhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCC
Q 008808 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (553)
Q Consensus 306 lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~ 385 (553)
||+|++||++||||||||||||++ +.|||||||||||||+|+ ||+|||+++|+||++++..+.+++... ++
T Consensus 232 lKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~-d~~dlm~~~E~li~~i~~~l~~~~~~~-------~~ 302 (496)
T TIGR00499 232 LKRLIVGGFEKVYEIGRNFRNEGV-DTTHNPEFTMIEFYQAYA-DYEDLMDLTENLFKFLAQELLGTTKIT-------YG 302 (496)
T ss_pred HHHHHhCCCCceEEEecceecCCC-CCcccchhheeehhhhcC-CHHHHHHHHHHHHHHHHHHHhccccee-------cC
Confidence 999999999999999999999998 569999999999999997 799999999999999999998765532 23
Q ss_pred CccccCCCCCcccCHHHHHHHHH-HcCCCCCCCC---------------------CCCcHHHHHHhHHHHHHhCCccEEE
Q 008808 386 FEPLKYKPKTLRLTFEEGVQMLK-DAGVEIDPLG---------------------DLNTESERKLGQLVLEKYGTEFYIL 443 (553)
Q Consensus 386 ~~~~~~~~~~~~i~~~ea~~ll~-~~g~~~~~~~---------------------dl~~~~e~~l~~~v~~~~~~~~~ii 443 (553)
...+++..||+|+||.||++++. ..|++..... ++.......++.+|++++..| +||
T Consensus 303 ~~~~~~~~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~l~~P-~fv 381 (496)
T TIGR00499 303 ELEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHTLIQP-TFI 381 (496)
T ss_pred ceeccCCCCceEEEHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhccCCC-EEE
Confidence 33466777999999999999774 4566542111 111223344555566666554 567
Q ss_pred eccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHH------HcCCChhcH--HHHHHHhhcCC
Q 008808 444 HRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQ------ACGIDVKTI--STYIDSFRYGA 515 (553)
Q Consensus 444 ~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~------~~g~~~~~~--~~yl~a~~~G~ 515 (553)
+|||.+++|| ++++++||++++|||||++|+||||||+|+|||++|++||. +.|.+++.+ +|||+|++|||
T Consensus 382 ~dyP~~~spl-ak~~~~~p~~~~rFeL~i~G~Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~ 460 (496)
T TIGR00499 382 THYPAEISPL-AKRNPSNPEFTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGM 460 (496)
T ss_pred ECCchhcCcc-cccCCCCCCeEEEEEEEeCCeEEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCC
Confidence 8999999999 78999999999999999999999999999999999999975 468887654 89999999999
Q ss_pred CCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 516 PPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 516 pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|||||||||||||+|+|||++|||||++||++..
T Consensus 461 PP~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 461 PPTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred CCCceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 9999999999999999999999999999999763
No 10
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-102 Score=846.28 Aligned_cols=433 Identities=23% Similarity=0.374 Sum_probs=364.8
Q ss_pred cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|. ||||+|.++++..+. .++.+++. ...|++|+|+|||+++|.+| |++|++|||++++||||+..+. ++++.
T Consensus 33 g~-py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G-k~~F~~lrD~~g~iQ~~~~~~~--~~~~~ 108 (505)
T PRK12445 33 GV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARDS--LPEGV 108 (505)
T ss_pred CC-CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCC-CcEEEEEEeCCccEEEEEECCc--cchhh
Confidence 56 999999999887553 23333321 24588999999999999999 8999999999999999998653 22232
Q ss_pred H-HHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCc
Q 008808 151 V-RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQ 228 (553)
Q Consensus 151 ~-~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 228 (553)
+ +....|+.||+|+|+|+|.++. +|++||+++++++||+|..| |....+ ..+.
T Consensus 109 ~~~~~~~l~~Gd~V~v~G~~~~t~------~gelel~~~~~~llsk~~~plP~~~~~-------------------~~d~ 163 (505)
T PRK12445 109 YNDQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLPDKFHG-------------------LQDQ 163 (505)
T ss_pred HHHHHhcCCCCCEEEEEEEEEecC------CCcEEEEEeEEEEEecCCCCCCccccc-------------------ccCh
Confidence 2 3456799999999999998764 56899999999999999888 875432 3589
Q ss_pred cccccccceeecc-HHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCc--cceee--cCCCCceecccChh
Q 008808 229 DTRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRL--DYKGQSACLAQSPQ 303 (553)
Q Consensus 229 e~Rl~~R~LdLr~-~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga--~~F~v--~~~~~~~~L~~SPq 303 (553)
++|+|+||||||+ +..+++|++||+|+++||+||.++||+||+||+|++. +||| .+|.+ ++++.++||+||||
T Consensus 164 e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~--~gGa~a~pF~t~~~~~~~~~yL~~SpE 241 (505)
T PRK12445 164 EVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVI--PGGASARPFITHHNALDLDMYLRIAPE 241 (505)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec--CCCCcccceecccccCCcceeeecCHH
Confidence 9999999999995 8999999999999999999999999999999999864 5555 48975 78999999999999
Q ss_pred hHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 008808 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ 383 (553)
Q Consensus 304 l~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~ 383 (553)
||||+|++||++||||||||||||++ |.|||||||||||||+|. ||+|+|+++|+||++++..+.+.+.. .
T Consensus 242 LylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~-d~~d~m~l~E~li~~l~~~~~~~~~~-------~ 312 (505)
T PRK12445 242 LYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYA-DYHDLIELTESLFRTLAQEVLGTTKV-------T 312 (505)
T ss_pred HHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecC-CHHHHHHHHHHHHHHHHHHHhcccce-------e
Confidence 99999999999999999999999998 899999999999999998 79999999999999999888765432 2
Q ss_pred CCCccccCCCCCcccCHHHHHHHHHH-------------------cCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEe
Q 008808 384 YPFEPLKYKPKTLRLTFEEGVQMLKD-------------------AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILH 444 (553)
Q Consensus 384 ~~~~~~~~~~~~~~i~~~ea~~ll~~-------------------~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~ 444 (553)
+....+++..||+|++|.||++.+.. .|++.++..++......+++.+|++++..| +||+
T Consensus 313 ~~~~~i~~~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vE~~l~~P-~Fv~ 391 (505)
T PRK12445 313 YGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQP-TFIT 391 (505)
T ss_pred cCceeccCCCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhcCCC-EEEE
Confidence 23334677789999999999986532 233332222333455666777777777655 5678
Q ss_pred ccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCC
Q 008808 445 RYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAP 516 (553)
Q Consensus 445 ~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~p 516 (553)
|||.+++||| +.+++||++++|||||++|.||||||+|+|||++|++||++ .|.+++. ++|||+|++||||
T Consensus 392 dyP~~~spla-k~~~~~p~~~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~P 470 (505)
T PRK12445 392 EYPAEVSPLA-RRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLP 470 (505)
T ss_pred CCCchhCccc-ccCCCCCCceEEEEEEeCCEEEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCC
Confidence 8999999997 67889999999999999999999999999999999999974 3776654 4899999999999
Q ss_pred CcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 517 PHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 517 P~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
||||||||||||+|+|||+.|||||++||+++.
T Consensus 471 P~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 471 PTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 503 (505)
T ss_pred CCCeEEEhHHHHHHHHcCCCchheEecCCCCCC
Confidence 999999999999999999999999999999864
No 11
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=8e-102 Score=846.57 Aligned_cols=469 Identities=19% Similarity=0.298 Sum_probs=380.1
Q ss_pred ccccccCCCcCCcCccchhhhhc----cCCCCCCcccccccCcce-EEecccc--CCCCCCEEEEEEEEeeeccCCCceE
Q 008808 52 LSIEEEGPLANNYGDVPLQELQS----VNDPQTGKWSEAVNGREW-TVVGALN--GSLKDQEVLIRGRVHTTRPVGNKLA 124 (553)
Q Consensus 52 ~~~~~~d~~~~~yg~~~~~~~~~----~~~pyphkf~~~~~~~~~-~~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~ 124 (553)
++.+++|.+++.|...|...+++ |.|||||+|.++++..++ ..+.++. +...+..|+|+|||+++|.+|+|++
T Consensus 73 ~~~~~~~~~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~ 152 (585)
T PTZ00417 73 KKEEEAEVDPRLYYENRSKFIQEQKAKGINPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLR 152 (585)
T ss_pred cccccccCChHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCE
Confidence 34556788999999998877765 689999999999887553 2333332 2234667999999999999997899
Q ss_pred EEEEEeCCeEEEEEeecCCCCcchH-HHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCc
Q 008808 125 FVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PIT 202 (553)
Q Consensus 125 Fl~Lrd~~~~iQvv~~~~~~~~~~~-~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~ 202 (553)
|++|||++++|||+++.+..+.+.+ +..+.+.|+.||+|.|+|++.++. ++++||.+++|.+||+|..+ |+.
T Consensus 153 F~~L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t~------~gel~i~~~~i~llsk~l~~lP~~ 226 (585)
T PTZ00417 153 FFDLVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSK------KGELSIFPKETIILSPCLHMLPMK 226 (585)
T ss_pred EEEEEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCCC------CceEEEEEEEEEEEecCCCCCCcc
Confidence 9999999999999998763222222 333457899999999999977543 56899999999999999988 863
Q ss_pred cccccccHHHHHHhhhcCCCCCCCCccccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCC
Q 008808 203 IEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281 (553)
Q Consensus 203 ~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e 281 (553)
. +..+.++|+++|||||| ++..+++|++||+|+++||+||+++||+||+||+|++.+.+
T Consensus 227 ~--------------------g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GG 286 (585)
T PTZ00417 227 Y--------------------GLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGG 286 (585)
T ss_pred c--------------------CCCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCc
Confidence 2 34578999999999998 58999999999999999999999999999999999876433
Q ss_pred CCccceee--cCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHH
Q 008808 282 GGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVD 359 (553)
Q Consensus 282 gga~~F~v--~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e 359 (553)
.+|.||.+ ++++.++||+||||||||+|++||++||||||||||||++ +.||||||||||||++|+ ||+|+|+++|
T Consensus 287 A~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~-~~rHnpEFTmlE~y~ay~-dy~dlM~l~E 364 (585)
T PTZ00417 287 ANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGI-DNTHNPEFTSCEFYWAYA-DFYDLIKWSE 364 (585)
T ss_pred ccceeEEecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCC-CCCccceeeeeeeeeecC-CHHHHHHHHH
Confidence 34458987 6799999999999999999999999999999999999998 579999999999999997 7999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHH----------------------HHHHHcCCCCCCC
Q 008808 360 RLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV----------------------QMLKDAGVEIDPL 417 (553)
Q Consensus 360 ~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~----------------------~ll~~~g~~~~~~ 417 (553)
+||.+++..+.+.+...+...+.......+++..||++++|.+++ +++++.|+++++.
T Consensus 365 ~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~ 444 (585)
T PTZ00417 365 DFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNP 444 (585)
T ss_pred HHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCC
Confidence 999999998876544332211100011234555566666655554 4666667665543
Q ss_pred CCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHH--
Q 008808 418 GDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQ-- 495 (553)
Q Consensus 418 ~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~-- 495 (553)
.+.....++++..+|++++...++||+|||..++||| +.+++||++++|||||++|.||+|||+|+|||.+|++||.
T Consensus 445 ~~~~~~l~~l~e~~vE~~l~~~PtFI~dyP~~~sPLa-k~~~~dp~v~eRFELfi~G~EiangysELnDp~eQr~Rf~~q 523 (585)
T PTZ00417 445 PTAAKLLDQLASHFIENKYPNKPFFIIEHPQIMSPLA-KYHRSKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFSAQ 523 (585)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEECCChhhCchh-hhcCCCCCeEEeEEeEECCEEEccCcchhcCHHHHHHHHHHH
Confidence 3333444555667788888764566788999999996 5788899999999999999999999999999999999875
Q ss_pred ----HcCCChh--cHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 496 ----ACGIDVK--TISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 496 ----~~g~~~~--~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
+.|.+++ .+++||+||+||||||||||||||||+|+|||+.|||||++||++..
T Consensus 524 ~~~r~~g~~e~~~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 524 QKDREKGDAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred HHHHHcCCCcccccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 3464333 35679999999999999999999999999999999999999999864
No 12
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.6e-101 Score=836.24 Aligned_cols=436 Identities=24% Similarity=0.395 Sum_probs=363.2
Q ss_pred cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|.|||||+|.++++..+. .+..++.. ...+++|+|+|||+++|.+| |++|++|||++++||||++.+. .++++
T Consensus 21 g~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g-~~~Fi~lrD~~g~iQ~v~~~~~--~~~~~ 97 (491)
T PRK00484 21 GIDPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG-KASFATLQDGSGRIQLYVSKDD--VGEEA 97 (491)
T ss_pred CCCCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC-ceEEEEEEcCCccEEEEEECCc--CCHHH
Confidence 789999999999776443 22222221 12347899999999999999 9999999999999999998753 44566
Q ss_pred HHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCcc
Q 008808 151 VRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (553)
Q Consensus 151 ~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (553)
++....|+.||+|.|+|+|++++ ++++||.++++.+||+|..+ |+...+ ..+.+
T Consensus 98 ~~~~~~l~~g~~v~v~G~v~~t~------~ge~el~~~~~~vls~~~~plP~~~~~-------------------~~~~~ 152 (491)
T PRK00484 98 LEAFKKLDLGDIIGVEGTLFKTK------TGELSVKATELTLLTKSLRPLPDKFHG-------------------LTDVE 152 (491)
T ss_pred HHHHhcCCCCCEEEEEEEEEEcC------CCcEEEEEeEEEEEeccCCCCCccccc-------------------ccchh
Confidence 77777799999999999999764 46899999999999999887 864432 35789
Q ss_pred ccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHh
Q 008808 230 TRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHK 306 (553)
Q Consensus 230 ~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~l 306 (553)
+|+++|||||| ++.++++|++||+|++.||+||.++||+||+||+|++.+++++|++|.+ +||+.++||+|||||||
T Consensus 153 ~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~l 232 (491)
T PRK00484 153 TRYRQRYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELYL 232 (491)
T ss_pred hhccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCCceEeccCHHHHH
Confidence 99999999998 6999999999999999999999999999999999986543333579975 78999999999999999
Q ss_pred hhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCC
Q 008808 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (553)
Q Consensus 307 k~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~ 386 (553)
|+||+||++||||||||||||+++ .|||||||||||||+|. ||+|+|+++|+|+++++..+.++.. + .+..
T Consensus 233 k~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~-d~~d~m~~~E~li~~i~~~~~~~~~--i-----~~~~ 303 (491)
T PRK00484 233 KRLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYA-DYNDMMDLTEELIRHLAQAVLGTTK--V-----TYQG 303 (491)
T ss_pred HHHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCce--E-----ecCC
Confidence 999999999999999999999985 69999999999999997 7999999999999999998875422 1 1222
Q ss_pred ccccCCCCCcccCHHHHHHHHH-----------------HcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCc
Q 008808 387 EPLKYKPKTLRLTFEEGVQMLK-----------------DAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLA 449 (553)
Q Consensus 387 ~~~~~~~~~~~i~~~ea~~ll~-----------------~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~ 449 (553)
..+++..||+|+||.||++.+. +.|++..+..+.......+++.+|++++..|+ ||+|||.+
T Consensus 304 ~~~~~~~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~~~~~P~-Fi~dyP~~ 382 (491)
T PRK00484 304 TEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEFVEPKLIQPT-FITDYPVE 382 (491)
T ss_pred EeecCCCCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhhcCCcE-EEECCChH
Confidence 3456667999999999997642 12222222222233345566677777776665 47889999
Q ss_pred CCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChh--cHHHHHHHhhcCCCCccee
Q 008808 450 VRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVK--TISTYIDSFRYGAPPHGGF 521 (553)
Q Consensus 450 ~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~--~~~~yl~a~~~G~pP~~G~ 521 (553)
++|| +|++++||++++|||||++|+||||||+|+|||++|++||.+ .|.+++ .++|||+|++|||||||||
T Consensus 383 ~~pf-~k~~~~~~~~~~rFdL~i~G~Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~ 461 (491)
T PRK00484 383 ISPL-AKRHREDPGLTERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGL 461 (491)
T ss_pred Hhhh-hccCCCCCCeEEEEEEEECCEEEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeE
Confidence 9999 578999999999999999999999999999999999999963 355544 3479999999999999999
Q ss_pred eecHHHHHHHHcCCCCccccccccCCCC
Q 008808 522 GVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 522 GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|||||||+|++||+.|||||++||+++.
T Consensus 462 GiGiDRLvm~ltg~~~Irdvi~FP~~~~ 489 (491)
T PRK00484 462 GIGIDRLVMLLTDSPSIRDVILFPLMRP 489 (491)
T ss_pred EEeHHHHHHHHhCCCcHHhcccCCCCCC
Confidence 9999999999999999999999999864
No 13
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=6e-101 Score=826.78 Aligned_cols=418 Identities=28% Similarity=0.469 Sum_probs=374.5
Q ss_pred CCCCCEEEEEEEEeeeccCCCceEEEEEEeCC--eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCC
Q 008808 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~--~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (553)
.+.|++|+|+|||+++|.+| |++|++|||++ +.||||++.+ .+.++.++++.|+.||+|.|+|+|.+++ +
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~-~~~F~~lrD~~~~g~iQ~v~~~~---~~~~~~~~~~~l~~gs~V~v~G~v~~~~----~ 84 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGE---DNPYLFQLLKSLTTGSSVSVTGKVVESP----G 84 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCC-CeEEEEEECCCCCccEEEEEeCC---cChHHHHHHHcCCCCcEEEEEEEEEcCC----C
Confidence 57799999999999999888 99999999999 9999999875 2456788889999999999999998754 3
Q ss_pred CceeEEEEEeEEEEeecCC-CC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHHHH
Q 008808 179 ATQQVEVQIKKLYCVSRAA-KT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGN 256 (553)
Q Consensus 179 ~t~~~Ei~v~~i~~ls~~~-~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~ 256 (553)
.++++||.++++.|||+|. .+ |++.++ .+.++|+++||||+|++..+++|++||.|++
T Consensus 85 ~~~~~El~~~~i~vl~~~~~~~~P~~~~~--------------------~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~ 144 (453)
T TIGR00457 85 KGQPVELQVKKIEVVGEAEPDDYPLQKKE--------------------HSLEFLRDIAHLRLRTNTLGAVMRVRNALSQ 144 (453)
T ss_pred CCCCEEEEEeEEEEEecCCccCCCCCccc--------------------cChhhHhhCcceecCCHHHHHHHHHHHHHHH
Confidence 4578999999999999997 45 775543 2467889999999999999999999999999
Q ss_pred HHHHHhHhCCcEEEecceeeccCCCCCccceeec---------CCCCceecccChhhHhhhcccCCCceeEEEeceecCC
Q 008808 257 IFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---------YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327 (553)
Q Consensus 257 ~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---------~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E 327 (553)
.+|+||.++||+||+||+|++++++|++++|.|. |||.++||+||||||||++ ++|++||||||||||||
T Consensus 145 ~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E 223 (453)
T TIGR00457 145 AIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAE 223 (453)
T ss_pred HHHHHHHHCCCEEecCCeEeecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccC
Confidence 9999999999999999999998999999999887 8999999999999999976 68899999999999999
Q ss_pred CCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcccc-----CCCCCcccCHHH
Q 008808 328 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK-----YKPKTLRLTFEE 402 (553)
Q Consensus 328 ~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~i~~~e 402 (553)
+++|+|||||||||||||+|+ +|+|+|+++|+|+++++..+.+.++.+++.+...++...+. ...+|++|+|.|
T Consensus 224 ~~~t~rHl~EFt~le~e~~~~-~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~e 302 (453)
T TIGR00457 224 KSNTSRHLSEFWMIEPEMAFA-NLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTD 302 (453)
T ss_pred CCCCCcCcchhccceeeeecC-CHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHH
Confidence 998899999999999999998 69999999999999999999988888776664433221111 124799999999
Q ss_pred HHHHHHHcCCC----CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEE
Q 008808 403 GVQMLKDAGVE----IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEI 477 (553)
Q Consensus 403 a~~ll~~~g~~----~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei 477 (553)
|+++|++.+.. ..++.++++++|+.|+. .+..+++||+|||.+++|||++++ ++|++++|||||++| +||
T Consensus 303 a~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~----~~~~~p~fIt~~P~~~~pfy~~~~-~~~~~~~~fDL~~~g~gEi 377 (453)
T TIGR00457 303 AIEILKESDKNFEYEDFWGDDLQTEHERFLAE----EYFKPPVFVTNYPKDIKAFYMKLN-DDGKTVAAMDLLAPGIGEI 377 (453)
T ss_pred HHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHH----HhCCCCEEEECCCcccChhhcccC-CCcCceeeeeeccCCceEE
Confidence 99999998642 34556889999999873 455566788999999999998888 899999999999999 699
Q ss_pred eeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 478 ISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 478 ~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+||++|+|+++++.++++++|+|++.++|||++++||+|||||||||||||+|++||++|||||++|||+|+||.|
T Consensus 378 ~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~~p 453 (453)
T TIGR00457 378 IGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNINF 453 (453)
T ss_pred eehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
No 14
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.4e-100 Score=821.75 Aligned_cols=425 Identities=29% Similarity=0.466 Sum_probs=380.9
Q ss_pred Eeccc-cCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 94 VVGAL-NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 94 ~i~~l-~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
.+.++ ...+.|++|+|+|||+++|.+| |++|++|||+++.+|+++..+. +.+++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~~~~~~~~~~V~i~G~v~~~R~~g-~~~Fi~lrD~~g~iq~~~~~~~---~~~~~~~~~~l~~~s~v~v~G~v~~~ 80 (450)
T PRK03932 5 SIKDILKGKYVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDN---GEEYFEEIKKLTTGSSVIVTGTVVES 80 (450)
T ss_pred EHHHhcccccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCcEEEEEEcCC---ChHHHHHHhcCCCCcEEEEEEEEEcC
Confidence 34554 4578899999999999999998 9999999999999999997753 46678888999999999999999976
Q ss_pred CCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHH
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~R 251 (553)
+. .++++||++++++||++|..+ |+..++ .+.++|+++||||||++.++++|++|
T Consensus 81 ~~----~~~~~el~~~~i~vl~~~~~~~p~~~~~--------------------~~~~~~~~~r~l~lR~~~~~~~l~~R 136 (450)
T PRK03932 81 PR----AGQGYELQATKIEVIGEDPEDYPIQKKR--------------------HSIEFLREIAHLRPRTNKFGAVMRIR 136 (450)
T ss_pred CC----CCCCEEEEEEEEEEccCCCCCCCCCccc--------------------cChHHHhhCceeeccCHHHHHHHHHH
Confidence 52 346799999999999998777 875433 24688999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee---------cCCCCceecccChhhHhhhcccCCCceeEEEec
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL---------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGP 322 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v---------~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~ 322 (553)
|.|++.+|+||.++||+||+||+|++++++|++++|.| +|||.++||+||||||||++ ++|++|||||||
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~ 215 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGP 215 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeee
Confidence 99999999999999999999999999899999999999 89999999999999999986 589999999999
Q ss_pred eecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcccc-----CCCCCcc
Q 008808 323 VFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK-----YKPKTLR 397 (553)
Q Consensus 323 ~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~ 397 (553)
|||||+++|+|||||||||||||+|. +|+|+|+++|+|+++++..+.+++..+++.++...+...++ ...||++
T Consensus 216 ~FR~E~~~t~rHl~EFt~lE~e~~~~-~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~r 294 (450)
T PRK03932 216 TFRAENSNTRRHLAEFWMIEPEMAFA-DLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPR 294 (450)
T ss_pred ccccCCCCCccccccccccceEEecc-CHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceE
Confidence 99999998999999999999999998 69999999999999999999988888887766544332221 2358999
Q ss_pred cCHHHHHHHHHHcCCCC----CCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeC
Q 008808 398 LTFEEGVQMLKDAGVEI----DPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIR 473 (553)
Q Consensus 398 i~~~ea~~ll~~~g~~~----~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~ 473 (553)
|||.||+++|++.|.++ .++.++++..|+.|+. ++++.| +||+|||.+++|||+++++++ ++++|||||+|
T Consensus 295 ity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~---~~~~~p-vfI~~yP~~~~pfy~~~~~~~-~~~~~fdLl~~ 369 (450)
T PRK03932 295 ITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAE---EHFKKP-VFVTNYPKDIKAFYMRLNPDG-KTVAAMDLLAP 369 (450)
T ss_pred eEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHH---HhcCCc-EEEECCCcccCcccCcCCCCC-CEEEEEEEEcC
Confidence 99999999999987643 4556788888988875 456655 668899999999998888888 99999999999
Q ss_pred C-EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008808 474 G-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIA 552 (553)
Q Consensus 474 G-~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~ 552 (553)
| .||++|++|+|+++.+.++++++|+++..++||+++++||+|||||||||||||+|++||++|||||++|||+|+||.
T Consensus 370 g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r~~ 449 (450)
T PRK03932 370 GIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAE 449 (450)
T ss_pred CCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 9 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 008808 553 P 553 (553)
Q Consensus 553 p 553 (553)
|
T Consensus 450 p 450 (450)
T PRK03932 450 F 450 (450)
T ss_pred C
Confidence 8
No 15
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-101 Score=802.90 Aligned_cols=434 Identities=24% Similarity=0.410 Sum_probs=366.8
Q ss_pred cCCCCCCcccccccCcce-EEecccc-CCCC--CCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALN-GSLK--DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~-~~~~--g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|+||||+.|+.+.+..+. .++.+.+ +... ...|+|+|||+++|.+| |++|++|.|++++||++++++. +..+.
T Consensus 28 g~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~G-K~~F~~i~d~~gkiQ~yi~k~~--~~~~~ 104 (502)
T COG1190 28 GIDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMG-KASFADLQDGSGKIQLYVNKDE--VGEEV 104 (502)
T ss_pred CCCCCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccC-ceeEEEEecCCceEEEEEeccc--cchhh
Confidence 789999999999866432 1222111 2222 23499999999999999 9999999999999999999874 33444
Q ss_pred HH-HHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCc
Q 008808 151 VR-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQ 228 (553)
Q Consensus 151 ~~-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 228 (553)
++ +.+.+..||||+|+|.+.++. +|+++|.|+++++|++|+.| |... ++++|+
T Consensus 105 ~~~~~~~~dlGDiigv~G~~~~T~------~GelSv~v~~~~lLsKsL~pLPeK~-------------------hgL~D~ 159 (502)
T COG1190 105 FEALFKKLDLGDIIGVEGPLFKTK------TGELSVSVEELRLLSKSLRPLPEKF-------------------HGLTDK 159 (502)
T ss_pred HHHHHhccccCCEEeeeeeeeecC------CCceEEEEEEEeeecccCCCCChhh-------------------cCCccH
Confidence 44 678899999999999998765 67999999999999999999 8533 456799
Q ss_pred cccccccceeecc-HHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhH
Q 008808 229 DTRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLH 305 (553)
Q Consensus 229 e~Rl~~R~LdLr~-~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~ 305 (553)
|+|+|+|||||.. +..+.+|..||+|+++||+||+++||+||+||+|+..+.+..|+||.+ |.++.++|||+|||||
T Consensus 160 E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~dlyLRIApELy 239 (502)
T COG1190 160 EIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELY 239 (502)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCCceEEeeccHHH
Confidence 9999999999997 789999999999999999999999999999999986443334459987 5689999999999999
Q ss_pred hhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCC
Q 008808 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (553)
Q Consensus 306 lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~ 385 (553)
||+||+|||+||||||++||||+. +.||||||||||+|+||+ ||+|+|+++|+|+++++..+.+... ..|+
T Consensus 240 LKRliVGG~erVfEIgr~FRNEGi-d~tHNPEFTmlE~Y~AYa-Dy~D~m~ltE~Li~~~a~~v~gt~~-------v~y~ 310 (502)
T COG1190 240 LKRLIVGGFERVFEIGRNFRNEGI-DTTHNPEFTMLEFYQAYA-DYEDLMDLTEELIKELAKEVNGTTK-------VTYG 310 (502)
T ss_pred HHHHHhcCchhheeeccccccCCC-ccccCcchhhHHHHHHHh-HHHHHHHHHHHHHHHHHHHhcCCeE-------EEEC
Confidence 999999999999999999999998 899999999999999998 6999999999999999999886432 2455
Q ss_pred CccccCCCCCcccCHHHHHH------------------HHHHcCCCCCCCC--CCCcHHHHHHhHHHHHHhCCccEEEec
Q 008808 386 FEPLKYKPKTLRLTFEEGVQ------------------MLKDAGVEIDPLG--DLNTESERKLGQLVLEKYGTEFYILHR 445 (553)
Q Consensus 386 ~~~~~~~~~~~~i~~~ea~~------------------ll~~~g~~~~~~~--dl~~~~e~~l~~~v~~~~~~~~~ii~~ 445 (553)
...++|.+||.|+++.+|+. ++++.|+.+.+.. .......+++..++++++-.|.|+ +|
T Consensus 311 ~~~id~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~liqPTFv-~d 389 (502)
T COG1190 311 GQEIDFSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLIQPTFV-TD 389 (502)
T ss_pred CEeEecCCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhcCCcee-ec
Confidence 66788999999999888773 2333344433221 133345667777788888888775 57
Q ss_pred cCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCCC
Q 008808 446 YPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAPP 517 (553)
Q Consensus 446 ~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~pP 517 (553)
||..++|+ +++++++|++++|||||++|.||||||+|+|||..|++||.+ .|.|++. +++||+||+|||||
T Consensus 390 ~P~eiSPL-ak~~~~~p~~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPP 468 (502)
T COG1190 390 HPVEISPL-AKRHRSNPGLTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPP 468 (502)
T ss_pred CccccCcc-ccCCCCCcchhhhheeeeccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCC
Confidence 99999999 799999999999999999999999999999999999999963 5777653 58999999999999
Q ss_pred cceeeecHHHHHHHHcCCCCccccccccCC
Q 008808 518 HGGFGVGLERVVMLFCGLNNIRKTSLYPRD 547 (553)
Q Consensus 518 ~~G~GiGidRLvm~l~g~~nIrdv~~FPr~ 547 (553)
|||||||||||||+|||..+|||||+||-.
T Consensus 469 TgG~GiGIDRLvMllT~~~sIRdVilFP~m 498 (502)
T COG1190 469 TGGLGIGIDRLVMLLTNSPSIRDVILFPAM 498 (502)
T ss_pred CCCccccHHHHHHHHcCCCchhheeccccc
Confidence 999999999999999999999999999963
No 16
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=8.6e-98 Score=811.86 Aligned_cols=418 Identities=28% Similarity=0.451 Sum_probs=367.0
Q ss_pred CCCCCCEEEEEEEEeeeccCCC-ceEEEEEEeCC--eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCcc
Q 008808 100 GSLKDQEVLIRGRVHTTRPVGN-KLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (553)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~-kl~Fl~Lrd~~--~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~ 176 (553)
..++|+.|+|+|||+++|.+|+ +++|++|||++ +.||||+..+.. .....|+.||+|.|+|+|+.++. .
T Consensus 46 ~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~-------~~~~~L~~ES~V~V~G~V~~~~~-~ 117 (572)
T PLN02221 46 AGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY-------DLSTLVATGTCVTVDGVLKVPPE-G 117 (572)
T ss_pred hhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh-------hHHhcCCCceEEEEEEEEEeCCc-c
Confidence 5788999999999999999995 38999999999 799999976411 11235999999999999987764 2
Q ss_pred CCCceeEEEEEeEEEEeecCCC-C-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHH
Q 008808 177 KGATQQVEVQIKKLYCVSRAAK-T-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254 (553)
Q Consensus 177 ~~~t~~~Ei~v~~i~~ls~~~~-~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i 254 (553)
++++|.+||++++|.|||+|.. + |++... .+.|+++++|||++|++..+++||+||.|
T Consensus 118 ~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~--------------------~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i 177 (572)
T PLN02221 118 KGTKQKIELSVEKVIDVGTVDPTKYPLPKTK--------------------LTLEFLRDVLHLRSRTNSISAVARIRNAL 177 (572)
T ss_pred CCCCccEEEEEeEEEEEecCCCCCCCCCCCc--------------------CChHHHhhcchhhcCCHHHHHHHHHHHHH
Confidence 4567889999999999999964 5 764321 35788889999999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEecceeeccCCCCCccceee---------------------------------------------
Q 008808 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--------------------------------------------- 289 (553)
Q Consensus 255 ~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--------------------------------------------- 289 (553)
+++||+||.++||+||+||+|++++||||++.|.|
T Consensus 178 ~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (572)
T PLN02221 178 AFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAA 257 (572)
T ss_pred HHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhcc
Confidence 99999999999999999999999999999998876
Q ss_pred ---------------------------------------------cCCCCceecccChhhHhhhcccCCCceeEEEecee
Q 008808 290 ---------------------------------------------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (553)
Q Consensus 290 ---------------------------------------------~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~F 324 (553)
+|||+++||+||||||||+++ ++++|||||||||
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~-~~l~rVfeIgP~F 336 (572)
T PLN02221 258 KASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYA-CALSSVYTFGPTF 336 (572)
T ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHH-HhcCCeEEEccce
Confidence 699999999999999999965 5699999999999
Q ss_pred cCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcc---c--cCCCCCcccC
Q 008808 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP---L--KYKPKTLRLT 399 (553)
Q Consensus 325 R~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~---~--~~~~~~~~i~ 399 (553)
|||+++|+||||||||||+||+|. ||+|+|+++|+|++++++.+.++|..+++.+...++... + .+..||+||+
T Consensus 337 RAE~s~T~RHL~EFtmlE~Emaf~-d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIt 415 (572)
T PLN02221 337 RAENSHTSRHLAEFWMVEPEIAFA-DLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRIT 415 (572)
T ss_pred ecCCCCCCcccccccceeeeeecC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEE
Confidence 999999999999999999999998 799999999999999999999999988877654443211 1 1345899999
Q ss_pred HHHHHHHHHHc---CCC----CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEe
Q 008808 400 FEEGVQMLKDA---GVE----IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFI 472 (553)
Q Consensus 400 ~~ea~~ll~~~---g~~----~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~ 472 (553)
|.||+++|++. |.+ +.++.|+++++|+.|++.+ ++. ++||+|||..++|||++ .++|+.+++|||||+
T Consensus 416 y~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~---~~~-pvfv~dyP~~~~pfy~~-~~~d~~~~~~fDLl~ 490 (572)
T PLN02221 416 YTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVL---FQK-PLIVYNYPKGIKAFYMR-LNDDEKTVAAMDVLV 490 (572)
T ss_pred HHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHh---cCC-cEEEEcCChhhCccccc-CCCCCceEEEEEEec
Confidence 99999999884 543 3566789999999997643 233 47788999999999854 556788999999999
Q ss_pred CC-EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCC
Q 008808 473 RG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRI 551 (553)
Q Consensus 473 ~G-~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl 551 (553)
+| .||++|++|+|+++.+.++++++|+++..++|||++++||+|||||||||||||+|++||+.|||||++|||+|+|+
T Consensus 491 ~g~~El~~g~~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~ 570 (572)
T PLN02221 491 PKVGELIGGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKA 570 (572)
T ss_pred CCceEECCHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcC
Confidence 97 79999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 008808 552 A 552 (553)
Q Consensus 552 ~ 552 (553)
.
T Consensus 571 ~ 571 (572)
T PLN02221 571 D 571 (572)
T ss_pred C
Confidence 4
No 17
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-97 Score=813.05 Aligned_cols=441 Identities=21% Similarity=0.324 Sum_probs=354.7
Q ss_pred CcccccccCcce-EEecccc--CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hc
Q 008808 81 GKWSEAVNGREW-TVVGALN--GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RS 156 (553)
Q Consensus 81 hkf~~~~~~~~~-~~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~ 156 (553)
|+|.++++..++ .++.++. +...++.|+|+|||+++|.+| |++|++|||++++|||+++.+.. ++++++++. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~G-k~~F~~LrD~~G~IQvv~~~~~~-~~~~~~~~~~~~ 158 (659)
T PTZ00385 81 SSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVGQVGEH-FTREDLKKLKVS 158 (659)
T ss_pred ccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccC-CeEEEEEEECCceEEEEEECCcc-CCHHHHHHHHhC
Confidence 677777766442 3333332 223366799999999999999 89999999999999999987631 255566655 57
Q ss_pred CCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCC--CCCCccccccccHHHHHHhhhcCCCCCCCCccccccc
Q 008808 157 LSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAA--KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNN 234 (553)
Q Consensus 157 l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~--~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~ 234 (553)
|+.||+|+|+|+|.++. ++++||+++++++||++. ++|+.... ....+.++.|+||||
T Consensus 159 l~~gdiV~V~G~v~~t~------~GeleI~~~~i~lLska~~~~~~~~p~~--------------~k~~~~~d~e~R~r~ 218 (659)
T PTZ00385 159 LRVGDIIGADGVPCRMQ------RGELSVAASRMLILSPYVCTDQVVCPNL--------------RGFTVLQDNDVKYRY 218 (659)
T ss_pred CCCCCEEEEEEEEEecC------CceEEEEeeEEEEechhhhccccCCCCC--------------ccccccCChhhhccc
Confidence 99999999999998653 578999999999999954 33221100 012345789999999
Q ss_pred cceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHhhhccc
Q 008808 235 RVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSIC 311 (553)
Q Consensus 235 R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~lk~li~ 311 (553)
|||||| ++.++++|++||+|+++||+||+++||+||+||+|++.++++||++|.+ ++++.++||+||||||||+||+
T Consensus 219 RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLiv 298 (659)
T PTZ00385 219 RFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIV 298 (659)
T ss_pred ceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhh
Confidence 999997 5889999999999999999999999999999999998888889999988 4589999999999999999999
Q ss_pred CCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccC
Q 008808 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY 391 (553)
Q Consensus 312 ~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~ 391 (553)
||++||||||||||||++ +.||||||||||||++|. ||+|||+++|+|+.+++..+.+.....+...........+++
T Consensus 299 gG~erVyeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~-d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i~~ 376 (659)
T PTZ00385 299 GGMERIYEIGKVFRNEDA-DRSHNPEFTSCEFYAAYH-TYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDL 376 (659)
T ss_pred cccCCEEEEeceecCCCC-CCCccccccceeeeeecC-CHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccccC
Confidence 999999999999999998 589999999999999998 799999999999999999887643211100000000014677
Q ss_pred CCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHH--------------------------HHHhHHHHHHhCCccEEEec
Q 008808 392 KPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE--------------------------RKLGQLVLEKYGTEFYILHR 445 (553)
Q Consensus 392 ~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e--------------------------~~l~~~v~~~~~~~~~ii~~ 445 (553)
..||+|+||.+++. +..|+++.+.+|+++..+ .+++.++++++..| +||+|
T Consensus 377 ~~Pf~Rit~~d~~~--e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~~l~qP-tFI~d 453 (659)
T PTZ00385 377 GKPFRRVSVYDEIQ--RMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDRVVEP-TFVMD 453 (659)
T ss_pred CCCceEEeHHHHHH--HHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHHhhCCc-EEEeC
Confidence 78999999655543 335777655445544332 23445555566555 45678
Q ss_pred cCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHH-----HcCCChh---cHHHHHHHhhcCCCC
Q 008808 446 YPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQ-----ACGIDVK---TISTYIDSFRYGAPP 517 (553)
Q Consensus 446 ~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~-----~~g~~~~---~~~~yl~a~~~G~pP 517 (553)
||.+++|| ++++++||++++|||||++|.||+|||+|+|||.+|++||. ..+.|++ .++|||+||+|||||
T Consensus 454 yP~e~sPL-ak~~~~dp~~teRFELfi~G~EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~DedfL~AleyGmPP 532 (659)
T PTZ00385 454 HPLFMSPL-AKEQVSRPGLAERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPP 532 (659)
T ss_pred CccccCcc-cccCCCCCCeEEEEEEEeCCeEeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHcCCCC
Confidence 99999999 78999999999999999999999999999999999999994 3344443 348999999999999
Q ss_pred cceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 518 HGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 518 ~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|||||||||||+|+|||+.|||||++||+...
T Consensus 533 tgG~GIGIDRLvMlltg~~sIReVilFP~mr~ 564 (659)
T PTZ00385 533 TAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQ 564 (659)
T ss_pred CCceEEcHHHHHHHHcCCcchhheecCccccc
Confidence 99999999999999999999999999997653
No 18
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=2.3e-95 Score=791.11 Aligned_cols=421 Identities=23% Similarity=0.373 Sum_probs=362.9
Q ss_pred CCCCCEEEEEEEEeeeccCCC-ceEEEEEEeCCe--EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc--
Q 008808 101 SLKDQEVLIRGRVHTTRPVGN-KLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-- 175 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~-kl~Fl~Lrd~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~-- 175 (553)
.+.|+.|+|+|||+++|.+|+ +++|++|||+++ .||||++... ...+-+.+|+.||+|.|+|+|+..+..
T Consensus 78 ~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~-----~~~~~l~~l~~gs~v~v~G~v~~~~~~~~ 152 (586)
T PTZ00425 78 KYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSI-----ENYEKLLKCGVGCCFRFTGKLIISPVQNE 152 (586)
T ss_pred ccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCch-----HHHHHHhcCCCccEEEEEEEEEcCCcccc
Confidence 567999999999999999985 599999999997 6999996531 123345679999999999999865432
Q ss_pred -cCC-CceeEEEEE-----eEEEEeecCCC--C-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhH
Q 008808 176 -IKG-ATQQVEVQI-----KKLYCVSRAAK--T-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQ 245 (553)
Q Consensus 176 -~~~-~t~~~Ei~v-----~~i~~ls~~~~--~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~ 245 (553)
..+ .++.+||.+ +++.||+.+.. + |++.+. .+.|+++++||||+|++..+
T Consensus 153 n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~--------------------~~~e~lr~~rhL~lR~~~~~ 212 (586)
T PTZ00425 153 NKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKN--------------------HGKEFLREVAHLRPRSYFIS 212 (586)
T ss_pred CcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCcc--------------------CChhhhhhccceeccCHHHH
Confidence 122 256699998 79999998842 3 654321 35788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee------------------------------------
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL------------------------------------ 289 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v------------------------------------ 289 (553)
++||+||.|..++|+||.++||+||+||+|++++||||++.|.|
T Consensus 213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 292 (586)
T PTZ00425 213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNAN 292 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999998986
Q ss_pred ---------------------------cCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCccccee
Q 008808 290 ---------------------------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342 (553)
Q Consensus 290 ---------------------------~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE 342 (553)
+|||+++||+||||||||++ ++|++|||+||||||||+++|+|||+||||||
T Consensus 293 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE 371 (586)
T PTZ00425 293 NNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIE 371 (586)
T ss_pred ccccccccccccccccccccccccccccccCcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEE
Confidence 58999999999999999976 57899999999999999999999999999999
Q ss_pred EEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcc---c-c-CCCCCcccCHHHHHHHHHHcC----CC
Q 008808 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP---L-K-YKPKTLRLTFEEGVQMLKDAG----VE 413 (553)
Q Consensus 343 ~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~---~-~-~~~~~~~i~~~ea~~ll~~~g----~~ 413 (553)
+||+|. +++++|+++|+|+++++..+.+.+..++..++....... + . +..||+||+|.||+++|++.+ .+
T Consensus 372 ~E~af~-d~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~ 450 (586)
T PTZ00425 372 PEIAFA-DLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVP 450 (586)
T ss_pred EEEecC-CHHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCC
Confidence 999998 799999999999999999998877777655432111110 1 1 235899999999999998764 45
Q ss_pred CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEEeeceeccCCHHHHHH
Q 008808 414 IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLAE 492 (553)
Q Consensus 414 ~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~l~~ 492 (553)
++++.|+++++|+.|+..+ ++. ++||+|||..++|||+++++++ .++++|||+++| +||++|++|+|+++.|.+
T Consensus 451 ~~~G~dL~~e~Er~L~~~~---~~~-PvFItdyP~~~kPFY~~~~~d~-~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~ 525 (586)
T PTZ00425 451 VKWGMDLQSEHERFVAEQI---FKK-PVIVYNYPKDLKAFYMKLNEDQ-KTVAAMDVLVPKIGEVIGGSQREDNLERLDK 525 (586)
T ss_pred CCcccccchHHHHHHHHHh---cCC-cEEEECCccccCccccCcCCCC-CeEEEEeEEccCceEEccCCCccccHHHHHH
Confidence 6778899999999997643 233 4678899999999999887655 788999999998 799999999999999999
Q ss_pred HHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 493 RAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 493 r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+++++|++++.++|||++++||+|||||||||||||+|++||++|||||++|||+|+++.+
T Consensus 526 ~ike~gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 526 MIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred HHHHcCCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 19
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.3e-95 Score=794.99 Aligned_cols=417 Identities=25% Similarity=0.423 Sum_probs=365.2
Q ss_pred CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCe--EEEEEeecCCCCcchHHHHHHh--cCCCCceEEEEEEEecCCCc
Q 008808 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVR--SLSNESIVDVIGVVSVPDVE 175 (553)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~--~iQvv~~~~~~~~~~~~~~~~~--~l~~esiV~V~G~v~~~~~~ 175 (553)
....|++|+|+|||+++|.+| +++|++|||+++ .||||+..+.. . .+.+. .|+.||+|.|+|+|+.++
T Consensus 103 ~~~~g~~V~v~GwV~~iR~~g-~~~Fi~l~Dgs~~~~lQ~v~~~~~~----~-~~~l~~~~l~~gs~V~V~G~v~~~~-- 174 (565)
T PLN02603 103 LARVGKTLNVMGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTPDAE----G-YDQVESGLITTGASVLVQGTVVSSQ-- 174 (565)
T ss_pred cccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCCEeEEEEEECcHH----H-HHHHhhcCCCCCCEEEEEEEEEecC--
Confidence 367799999999999999999 999999999885 69999976521 1 22222 499999999999998765
Q ss_pred cCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHH
Q 008808 176 IKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254 (553)
Q Consensus 176 ~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i 254 (553)
++.+.+||+++++.+|++|.++ |++.++. +.+.+..+||||+|++.++++||+||+|
T Consensus 175 --~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~--------------------s~e~lr~~~hLr~Rt~~~~ai~RiRS~i 232 (565)
T PLN02603 175 --GGKQKVELKVSKIVVVGKSDPSYPIQKKRV--------------------SREFLRTKAHLRPRTNTFGAVARVRNAL 232 (565)
T ss_pred --CCCccEEEEEeEEEEEECCCCCCCCccccc--------------------chhhhhhhhhhhhccHHHHHHHHHHHHH
Confidence 3346799999999999999877 8765432 3466677899999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEecceeeccCCCCCccceee------------------------------cCCCCceecccChhh
Q 008808 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL------------------------------DYKGQSACLAQSPQL 304 (553)
Q Consensus 255 ~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v------------------------------~~~~~~~~L~~SPql 304 (553)
++.+|+||.++||+|||||+|++++|||+++.|.| +|||+++||+|||||
T Consensus 233 ~~air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL 312 (565)
T PLN02603 233 AYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQL 312 (565)
T ss_pred HHHHHHHHHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchH
Confidence 99999999999999999999999999999987854 578999999999999
Q ss_pred HhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcC
Q 008808 305 HKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY 384 (553)
Q Consensus 305 ~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~ 384 (553)
|||++ ++|++|||+||||||||+++|+|||+||||||+||+|. |++|+|+++|++++++++.+.++|..+++.+....
T Consensus 313 ~~E~~-~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~-dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~ 390 (565)
T PLN02603 313 NGETY-ATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLNDDMACATAYLQYVVKYILENCKEDMEFFNTWI 390 (565)
T ss_pred HHHHH-HhcccceEEEecceeCCCCCCccccccceeeeeeeecC-CHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcc
Confidence 99985 67899999999999999999999999999999999997 79999999999999999999999988887665433
Q ss_pred CCcccc-----CCCCCcccCHHHHHHHHHHcCC----CCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCC
Q 008808 385 PFEPLK-----YKPKTLRLTFEEGVQMLKDAGV----EIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYT 455 (553)
Q Consensus 385 ~~~~~~-----~~~~~~~i~~~ea~~ll~~~g~----~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~ 455 (553)
....++ ...||++|+|.||+++|++.+. ...++.||++++|+.|++ ..++.+++||+|||..++|||+
T Consensus 391 ~~~~~~~l~~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~---~~~~~~PvfVtdyP~~ikpFYm 467 (565)
T PLN02603 391 EKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITE---EAFGGRPVIIRDYPKEIKAFYM 467 (565)
T ss_pred cccHHHHHHHhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHH---HhccCCCEEEECCccccCcccc
Confidence 221111 2348999999999999988743 356778999999999975 3355556788999999999995
Q ss_pred cccCCCCcceeEEEEEeCC-EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcC
Q 008808 456 MPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 456 ~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g 534 (553)
+ ..+|+.++++|||+++| +||++|+||+|+++++.++++++|++++.|+|||++++||+|||||||||||||+|++||
T Consensus 468 ~-~~~d~~~v~~fDLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg 546 (565)
T PLN02603 468 R-ENDDGKTVAAMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATG 546 (565)
T ss_pred c-cCCCCCeeEEEEEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhC
Confidence 4 55678899999999987 799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCCCCCCC
Q 008808 535 LNNIRKTSLYPRDPLRIA 552 (553)
Q Consensus 535 ~~nIrdv~~FPr~p~rl~ 552 (553)
++|||||++|||+|+++.
T Consensus 547 ~~nIRdvi~FPR~~g~~~ 564 (565)
T PLN02603 547 IDNIRDAIPFPRVPGSAE 564 (565)
T ss_pred CCchhheeeccCCCCCCC
Confidence 999999999999999974
No 20
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-95 Score=847.64 Aligned_cols=446 Identities=20% Similarity=0.289 Sum_probs=368.9
Q ss_pred cCccchhhhhc----cCCCCCCcccccccCcceEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEe
Q 008808 64 YGDVPLQELQS----VNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLA 139 (553)
Q Consensus 64 yg~~~~~~~~~----~~~pyphkf~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~ 139 (553)
+-..|+...++ |.|||||+|..+++. +++.+...|++|+|+|||+++|.+| |++|++|||++++||||+
T Consensus 613 ~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~------~~~~~~~~~~~V~v~Grv~~~R~~G-~~~F~~lrD~~g~iQ~v~ 685 (1094)
T PRK02983 613 QVRVRLAKLEALRAAGVDPYPVGVPPTHTV------AEALDAPTGEEVSVSGRVLRIRDYG-GVLFADLRDWSGELQVLL 685 (1094)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCccCH------HHHHHhcCCCEEEEEEEEEEEeeCC-CeEEEEEEeCCeeEEEEE
Confidence 33344444433 789999999988663 4454557899999999999999999 999999999999999999
Q ss_pred ecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhh
Q 008808 140 TVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASK 218 (553)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~ 218 (553)
+.+.. .++.+..|.+.|+.||+|.|+|+|.+++ ++++||.+++++++++|..| |.+.+
T Consensus 686 ~~~~~-~~~~~~~~~~~l~~gd~V~v~G~v~~t~------~ge~ei~~~~i~ll~k~~~plP~k~~-------------- 744 (1094)
T PRK02983 686 DASRL-EQGSLADFRAAVDLGDLVEVTGTMGTSR------NGTLSLLVTSWRLAGKCLRPLPDKWK-------------- 744 (1094)
T ss_pred ECCcc-chhhHHHHHhcCCCCCEEEEEEEEEEcC------CCCEEEEEeEEEEEeccCcCCCCccc--------------
Confidence 87632 2344556777899999999999998764 46899999999999999887 75432
Q ss_pred cCCCCCCCCccccccccceeecc-HHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCc
Q 008808 219 EGVQLPRVNQDTRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQS 295 (553)
Q Consensus 219 ~~~~~~~~~~e~Rl~~R~LdLr~-~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~ 295 (553)
+..+.++|+|+||||||+ +.++++|++||+|++.||+||.++||+||+||+|++..+++++++|.| +|++++
T Consensus 745 -----~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~ 819 (1094)
T PRK02983 745 -----GLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMD 819 (1094)
T ss_pred -----cCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCcc
Confidence 346899999999999985 899999999999999999999999999999999986555555679954 789999
Q ss_pred eecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008808 296 ACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKK 375 (553)
Q Consensus 296 ~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~ 375 (553)
+||+||||||||+|++||++||||||||||||++ +.||||||||||+||+|. ||+|+|+++|+|++++++.+.+....
T Consensus 820 ~yLriSPELylKrLivgG~erVFEIg~~FRnE~~-~~rHnpEFTmLE~y~a~~-dy~d~m~l~E~li~~i~~~v~~~~~~ 897 (1094)
T PRK02983 820 LYLRIAPELYLKRLCVGGVERVFELGRNFRNEGV-DATHNPEFTLLEAYQAHA-DYDTMRDLTRELIQNAAQAAHGAPVV 897 (1094)
T ss_pred chhhcChHHHHHHHHhcccCceEEEcceecCCCC-CCCccccccchhhhhhcC-CHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 9999999999999999999999999999999998 569999999999999997 79999999999999999988754221
Q ss_pred HHHHhhhcCCCccccCCCCCcccCHHHHHHH------------------HHHcCCCCCCCCCCCcHHHHHHhHHHHHHhC
Q 008808 376 ELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM------------------LKDAGVEIDPLGDLNTESERKLGQLVLEKYG 437 (553)
Q Consensus 376 ~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~l------------------l~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~ 437 (553)
... +......++++..||+++||.||++. +++.|++.++..+.......++..+|++++.
T Consensus 898 ~~~--~~~~~~~~i~~~~pf~rit~~eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~ve~~~~ 975 (1094)
T PRK02983 898 MRP--DGDGVLEPVDISGPWPVVTVHDAVSEALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHLVEDRTT 975 (1094)
T ss_pred eeC--CccccccccccCCCceEEEHHHHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcC
Confidence 000 00111224667789999999999862 2333444433223333455667777888887
Q ss_pred CccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH-----cCCChhcH---HHHHH
Q 008808 438 TEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA-----CGIDVKTI---STYID 509 (553)
Q Consensus 438 ~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~-----~g~~~~~~---~~yl~ 509 (553)
.|+| |+|||.+++||| |++++||++++|||||++|+||+|||+|+|||.+|++||.+ .+.|++.+ +|||+
T Consensus 976 ~P~F-v~dyP~~~spla-~~~~~~p~~~erFdL~i~G~Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~ 1053 (1094)
T PRK02983 976 FPTF-YTDFPTSVSPLT-RPHRSDPGLAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQ 1053 (1094)
T ss_pred CCEE-EECCCccccccc-ccCCCCCCeeEEEEEEECCEEEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHH
Confidence 6655 678999999995 78999999999999999999999999999999999988864 35555533 79999
Q ss_pred HhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 510 SFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 510 a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|++||||||||||||||||+|++||. |||||++||+...
T Consensus 1054 al~yGmPP~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~ 1092 (1094)
T PRK02983 1054 ALEYAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFPLVKP 1092 (1094)
T ss_pred HHHcCCCCCCeEEeeHHHHHHHHhCC-ChheEecCCcCCC
Confidence 99999999999999999999999996 9999999998653
No 21
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=1.6e-93 Score=779.72 Aligned_cols=400 Identities=21% Similarity=0.367 Sum_probs=350.4
Q ss_pred eccCCCceEEEEEEeCCeE--EEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEe
Q 008808 116 TRPVGNKLAFVVVRERVST--VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 116 ~R~~G~kl~Fl~Lrd~~~~--iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
.|.+| +++|++|||+++. ||||+..... . ....|+.|++|.|+|+|+.... ...+|.+||.+++|.||
T Consensus 129 ~r~~g-~i~FI~LrDGSg~~~lQvVv~~~~~--~-----~~~~L~~Es~V~V~G~V~~~~~--~~~~g~iEl~v~~i~VL 198 (633)
T PLN02532 129 APPPP-SVAYLLISDGSCVASLQVVVDSALA--P-----LTQLMATGTCILAEGVLKLPLP--AQGKHVIELEVEKILHI 198 (633)
T ss_pred cccCC-CcEEEEEECCCCccceEEEEeCCcc--c-----HhhcCCCceEEEEEEEEEecCC--CCCCCcEEEEeeEEEEE
Confidence 78899 9999999999997 9999986521 1 1267999999999999987632 23467899999999999
Q ss_pred ecCC-CC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEe
Q 008808 194 SRAA-KT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIH 271 (553)
Q Consensus 194 s~~~-~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~ 271 (553)
+++. .+ |++.+. .+.|+++++||||||++.++++||+||.|++++|+||.++||+||+
T Consensus 199 g~a~~~p~Pi~~k~--------------------~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 199 GTVDPEKYPLSKKR--------------------LPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred ecCCCCCCcccccc--------------------CCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 9986 34 654322 2467788999999999999999999999999999999999999999
Q ss_pred cceeeccCCCCCccc-----------------------------------------------------------------
Q 008808 272 TPKLIAGSSEGGSAV----------------------------------------------------------------- 286 (553)
Q Consensus 272 TP~l~~~~~egga~~----------------------------------------------------------------- 286 (553)
||+|++++||||++.
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 999999999999865
Q ss_pred ------------------------eeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCccccee
Q 008808 287 ------------------------FRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342 (553)
Q Consensus 287 ------------------------F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE 342 (553)
|.++|||+++||+||||||||+++ +||+|||+|||+||||+++|+|||+||||||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~-~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE 417 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYA-CALGNVYTFGPRFRADRIDSARHLAEMWMVE 417 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHH-HhcCceEEEccceecCCCCCCccccccccee
Confidence 566799999999999999999875 6899999999999999999999999999999
Q ss_pred EEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCc-----cccCCCCCcccCHHHHHHHHHHcC-----C
Q 008808 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFE-----PLKYKPKTLRLTFEEGVQMLKDAG-----V 412 (553)
Q Consensus 343 ~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~i~~~ea~~ll~~~g-----~ 412 (553)
+||+|. ||+|+|+++|+||+++++.+.++|..+++.++..+... ...+..||+||+|.||+++|++.+ .
T Consensus 418 ~Emaf~-d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~ 496 (633)
T PLN02532 418 VEMAFS-ELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFET 496 (633)
T ss_pred eeehhc-CHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCccc
Confidence 999998 69999999999999999999999988887765433221 113446899999999999998764 2
Q ss_pred CCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEEeeceeccCCHHHHH
Q 008808 413 EIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLA 491 (553)
Q Consensus 413 ~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~l~ 491 (553)
..+++.||++++|+.|.. ..++.| +||+|||..++|||++++ +|+.++++||||++| +||++|++|+|+++.|.
T Consensus 497 ~~~~g~dL~~e~Er~L~~---~~~~~P-vFVtdyP~~ikPFY~~~~-~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~ 571 (633)
T PLN02532 497 KPEWGIALTTEHLSYLAD---EIYKKP-VIIYNYPKELKPFYVRLN-DDGKTVAAFDLVVPKVGTVITGSQNEERMDILN 571 (633)
T ss_pred ccccCCccChHHHHHHHH---HHcCCC-EEEECCChhhchhhCCcC-CCCCceEEEEEecCCCeEEeeCcEeHHHHHHHH
Confidence 356778999999999864 335666 567899999999998766 467899999999996 69999999999999999
Q ss_pred HHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008808 492 ERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIA 552 (553)
Q Consensus 492 ~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~ 552 (553)
++++++|++++.|+|||++++||+|||||||||||||+||+||++|||||++|||+++++.
T Consensus 572 ~~~ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~ 632 (633)
T PLN02532 572 ARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKAN 632 (633)
T ss_pred HHHHHcCCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999974
No 22
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=8.2e-92 Score=767.53 Aligned_cols=430 Identities=28% Similarity=0.495 Sum_probs=339.9
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|+..++|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++..|+.||+|.|+|+|...
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-kl~Fi~LrD~sg~iQvv~~~~-----~~~~~~~~~L~~esvV~V~G~v~~r 77 (583)
T TIGR00459 4 HYCGQLRTEHLGQTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQVVCDPD-----ADALKLAKGLRNEDVVQVKGKVSAR 77 (583)
T ss_pred eeHhhcchhhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCC-----HHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 5677888888999999999999999999 899999999999999999764 3566778899999999999999864
Q ss_pred C-CccC--CCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 173 D-VEIK--GATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 173 ~-~~~~--~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
+ .+++ .+++++||.++++++||+|..+|+.+.+. .++.++||++||||||++.++++|+
T Consensus 78 ~~~~~n~~~~tg~iEl~~~~i~iL~~a~~~P~~~~~~------------------~~~~~~Rl~~RyLDLR~~~~~~~lr 139 (583)
T TIGR00459 78 PEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKT------------------DAEEEVRLKYRYLDLRRPEMQQRLK 139 (583)
T ss_pred CccccCccCCCCcEEEEEeEEEEeecCCCCCCccccc------------------ccchhhhcccceEEcCCHHHHHHHH
Confidence 3 2222 46788999999999999997557765421 2578999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecC--CCCc-eecccChhhHhhhcccCCCceeEEEeceecC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQS-ACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~-~~L~~SPql~lk~li~~g~~rVfeIg~~FR~ 326 (553)
+||+|++++|+||.++||+||+||+|+.++++| |.+|.+.+ ++.. ++|+||||||||+||+||++|||||||||||
T Consensus 140 ~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~eG-ar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~ 218 (583)
T TIGR00459 140 LRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEG-ARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRD 218 (583)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeccCCCCC-CcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeC
Confidence 999999999999999999999999999766664 67787755 3444 5599999999999999999999999999999
Q ss_pred CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHhhhcCCC-----ccccC
Q 008808 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV----------CKKELEAVAKQYPF-----EPLKY 391 (553)
Q Consensus 327 E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~----------~~~~i~~~~~~~~~-----~~~~~ 391 (553)
|++++.|| ||||||||||+|. +|+|+|+++|+|++++++.+.+. |..-+...+..-|- +-.++
T Consensus 219 E~~~t~r~-pEFT~le~E~af~-d~~dvm~~~E~li~~v~~~v~~~~~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~ 296 (583)
T TIGR00459 219 EDLRADRQ-PEFTQIDMEMSFM-TQEDVMELIEKLVSHVFLEVKGIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDV 296 (583)
T ss_pred CCCCCCCC-cccCcceeeecCC-CHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHCCCCCccccCcccccH
Confidence 99988888 9999999999998 69999999999999999887541 11111111111110 00000
Q ss_pred C---------------------------C---CCcccCHHHHHHHHHHcCCC------CCCCCC------CCcH------
Q 008808 392 K---------------------------P---KTLRLTFEEGVQMLKDAGVE------IDPLGD------LNTE------ 423 (553)
Q Consensus 392 ~---------------------------~---~~~~i~~~ea~~ll~~~g~~------~~~~~d------l~~~------ 423 (553)
. . .+.+-..++..++.++.|.+ +..... +-.+
T Consensus 297 ~~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (583)
T TIGR00459 297 TDLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKIL 376 (583)
T ss_pred HHhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHH
Confidence 0 0 01112233333444444433 111100 0011
Q ss_pred ---------------------HHHHHhHHHHHH---hC------CccEEEeccCCc-----------CCCCCCcccCCCC
Q 008808 424 ---------------------SERKLGQLVLEK---YG------TEFYILHRYPLA-----------VRPFYTMPCHDNS 462 (553)
Q Consensus 424 ---------------------~e~~l~~~v~~~---~~------~~~~ii~~~P~~-----------~~pfy~~~~~~~~ 462 (553)
....||++..+- ++ ..|.||+|||.. ++|| |+|+++|+
T Consensus 377 ~~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~~~~~wV~dfPlfe~~~~~~~~a~hhPf-T~p~~~d~ 455 (583)
T TIGR00459 377 LERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKDKEGRLCAAHHPF-TMPKDEDL 455 (583)
T ss_pred HHHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCCceEEEEEeCCCccccCCCceeeeECCC-CCCCCCCh
Confidence 112245443221 22 247889999997 9999 89999888
Q ss_pred c---------ceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh----cHHHHHHHhhcCCCCcceeeecHHHHH
Q 008808 463 L---------YSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK----TISTYIDSFRYGAPPHGGFGVGLERVV 529 (553)
Q Consensus 463 ~---------~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yl~a~~~G~pP~~G~GiGidRLv 529 (553)
. .+++|||++||.||+|||.|+|||+.|+++|+..|++.+ .+.+||+||+||+|||||+|||||||+
T Consensus 456 ~~l~~~p~~~~~~~yDLvlnG~ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlv 535 (583)
T TIGR00459 456 ENLEAAPEEALAEAYDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLM 535 (583)
T ss_pred hhhhcChhhhhhheeeEEEeceEecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHH
Confidence 7 899999999999999999999999999999999898765 468999999999999999999999999
Q ss_pred HHHcCCCCccccccccCCCCC
Q 008808 530 MLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 530 m~l~g~~nIrdv~~FPr~p~r 550 (553)
|+|||.+||||||+||++.+-
T Consensus 536 mlLt~~~sIRDVIaFPKt~~g 556 (583)
T TIGR00459 536 MLLTGTDNIRDVIAFPKTTAA 556 (583)
T ss_pred HHHcCCCchhheeecCCCCCC
Confidence 999999999999999998764
No 23
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-88 Score=707.59 Aligned_cols=416 Identities=30% Similarity=0.508 Sum_probs=344.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|..+++|++|+++||||+.|.+| +|+|++|||..|.+|+|++.+ .+.+.++.+..|+.|++|.|+|+|..
T Consensus 3 t~~cg~l~~~~vG~~V~L~GWV~r~Rd~G-gliFiDLRDr~GivQvv~~~~---~~~~~~~~a~~lr~E~vi~V~G~V~~ 78 (585)
T COG0173 3 THYCGELRESHVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPE---DSPEAFEVASRLRNEFVIQVTGTVRA 78 (585)
T ss_pred ceeccccCHHHCCCEEEEEeeeeeccccC-CeEEEEcccCCCeEEEEECCc---cCHHHHHHHHhcCceEEEEEEEEEEe
Confidence 36789999999999999999999999999 899999999999999999975 35677888999999999999999876
Q ss_pred CCC---ccCCCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHH
Q 008808 172 PDV---EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIF 248 (553)
Q Consensus 172 ~~~---~~~~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if 248 (553)
.+. ..+-.||++||++++|.|||.|..+|+.+.|.. .++.|+||.|||||||.|.++..+
T Consensus 79 R~e~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~-----------------~~~Ee~RLkYRyLDLRR~~m~~~l 141 (585)
T COG0173 79 RPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDET-----------------NASEEIRLKYRYLDLRRPEMQKNL 141 (585)
T ss_pred cCccccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCC-----------------CcchhhhhhhhhhhhcCHHHHHHH
Confidence 643 334578999999999999999988799887631 257899999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeec---CCCCceecccChhhHhhhcccCCCceeEEEeceec
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR 325 (553)
++||+++.++|+||+++||+||+||+|+.+ ++.||+.|.|+ +.|..+.|.||||||||.||++||+|+|||++|||
T Consensus 142 ~lR~kv~~~iR~~ld~~gF~EiETPiLtkS-TPEGARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFR 220 (585)
T COG0173 142 KLRSKVTKAIRNFLDDQGFLEIETPILTKS-TPEGARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFR 220 (585)
T ss_pred HHHHHHHHHHHHHHhhcCCeEeecCccccC-CCccccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeec
Confidence 999999999999999999999999999875 45569999986 47889999999999999999999999999999999
Q ss_pred CCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHH
Q 008808 326 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 405 (553)
Q Consensus 326 ~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ 405 (553)
+|+.+..|+ |||||||+||+|. +-+|+|+++|+|+..+|+.+.+ ++...||+|++|.||+.
T Consensus 221 DEDlRaDRQ-PEFTQiD~EmSF~-~~edv~~~~E~l~~~vf~~~~~-----------------i~l~~pFprmtY~eAm~ 281 (585)
T COG0173 221 DEDLRADRQ-PEFTQIDLEMSFV-DEEDVMELIEKLLRYVFKEVKG-----------------IELKTPFPRMTYAEAMR 281 (585)
T ss_pred ccccccccC-CcceeEeEEeecC-CHHHHHHHHHHHHHHHHHHhcC-----------------CccCCCcccccHHHHHH
Confidence 999999999 9999999999998 5799999999999999987753 11122445555555542
Q ss_pred -------------------------------------------------------------HHHHcCC------CCCCCC
Q 008808 406 -------------------------------------------------------------MLKDAGV------EIDPLG 418 (553)
Q Consensus 406 -------------------------------------------------------------ll~~~g~------~~~~~~ 418 (553)
..+..|. .+...
T Consensus 282 ~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~- 360 (585)
T COG0173 282 RYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEED- 360 (585)
T ss_pred HhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecC-
Confidence 1111110 00000
Q ss_pred CCCcHHH----------------------------------HHHhHHH---HHHhC------CccEEEeccCC-------
Q 008808 419 DLNTESE----------------------------------RKLGQLV---LEKYG------TEFYILHRYPL------- 448 (553)
Q Consensus 419 dl~~~~e----------------------------------~~l~~~v---~~~~~------~~~~ii~~~P~------- 448 (553)
.+..... ..||.+- ...++ ..|.||.|||.
T Consensus 361 ~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~ 440 (585)
T COG0173 361 GLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEE 440 (585)
T ss_pred CccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCCcccceEEEEEecCccCCcccc
Confidence 0111111 2233321 11121 24789999995
Q ss_pred -----cCCCCCCcccCCCCc---------ceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh----cHHHHHHH
Q 008808 449 -----AVRPFYTMPCHDNSL---------YSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK----TISTYIDS 510 (553)
Q Consensus 449 -----~~~pfy~~~~~~~~~---------~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yl~a 510 (553)
.++|| |||++.+.. .+..|||++||.||+|||.|+|+|+.|++-|+..|++++ .+..+|+|
T Consensus 441 ~~~~a~HHPF-T~P~~~~~~~l~~~p~~~~a~aYDlVlNG~ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~A 519 (585)
T COG0173 441 GRYVAAHHPF-TMPKPEDLELLEADPESVRARAYDLVLNGYELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEA 519 (585)
T ss_pred CceecccCCC-CCCCccchhhhhcCHHHhhhhhccEEeccEeeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 47999 999765432 478999999999999999999999999999999999987 45678999
Q ss_pred hhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCC
Q 008808 511 FRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 511 ~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~r 550 (553)
|+||.|||||+|+|||||+|+|+|..||||||+||++.+-
T Consensus 520 f~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a 559 (585)
T COG0173 520 FKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQA 559 (585)
T ss_pred HhcCCCCCcceeccHHHHHHHHcCCCchhheeecCCCccc
Confidence 9999999999999999999999999999999999998653
No 24
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.7e-87 Score=734.15 Aligned_cols=438 Identities=26% Similarity=0.413 Sum_probs=335.4
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|+..++|++|+|+|||+++|.+| +++|++|||+++.||||++.+. +.++.+++..|+.||+|.|+|+|..
T Consensus 60 t~~cg~l~~~~~gk~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~---~~~~~~~~~~L~~esvV~V~G~V~~ 135 (652)
T PLN02903 60 SHLCGALSVNDVGSRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDE---FPEAHRTANRLRNEYVVAVEGTVRS 135 (652)
T ss_pred CCchhhcchhhCCCEEEEEEEEEEEecCC-CcEEEEEEcCCccEEEEEeCCc---cHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 46799999999999999999999999999 8999999999999999998652 3567788899999999999999986
Q ss_pred CC-Ccc--CCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHH
Q 008808 172 PD-VEI--KGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGI 247 (553)
Q Consensus 172 ~~-~~~--~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~i 247 (553)
++ .++ +..||++||.+++++||++|..+ |+.+.+... ....++.++||+|||||||++.++++
T Consensus 136 r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~-------------~~~~~~ee~Rl~~RyLDLR~~~~q~~ 202 (652)
T PLN02903 136 RPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADE-------------QKDSIKEEVRLRYRVLDLRRPQMNAN 202 (652)
T ss_pred CCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCcccccccc-------------ccccCChhhhhccceeecCCHHHHHH
Confidence 53 222 33467899999999999999766 887754320 01135789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHh-CCcEEEecceeeccCCCCCccceeecC---CCCceecccChhhHhhhcccCCCceeEEEece
Q 008808 248 FRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDY---KGQSACLAQSPQLHKQMSICGDFGRVFETGPV 323 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~-~gF~EV~TP~l~~~~~egga~~F~v~~---~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~ 323 (553)
|++||+|++.+|+||.+ +||+||+||+|+.++++| |.+|.+.+ .+..+||+||||||||+||++|++||||||||
T Consensus 203 lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eG-ardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~ 281 (652)
T PLN02903 203 LRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEG-ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARC 281 (652)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCC-CcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehh
Confidence 99999999999999997 999999999999877775 55665533 36778899999999999999999999999999
Q ss_pred ecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHhhhcCCC-------
Q 008808 324 FRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV----------CKKELEAVAKQYPF------- 386 (553)
Q Consensus 324 FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~----------~~~~i~~~~~~~~~------- 386 (553)
||||+++++|| ||||||||||+|. +|+|+|+++|+|++++++.+.+. |..-++..+..-|-
T Consensus 282 FR~E~~~t~Rh-pEFTqLE~E~sf~-d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l 359 (652)
T PLN02903 282 FRDEDLRADRQ-PEFTQLDMELAFT-PLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLEL 359 (652)
T ss_pred hccCCCCCCcc-cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCcee
Confidence 99999988888 9999999999998 69999999999999999866431 11111111110000
Q ss_pred ---------ccc----------------cCCC--CCcccCHH---HHHHHHHHcCC------CCCCCCCC----------
Q 008808 387 ---------EPL----------------KYKP--KTLRLTFE---EGVQMLKDAGV------EIDPLGDL---------- 420 (553)
Q Consensus 387 ---------~~~----------------~~~~--~~~~i~~~---ea~~ll~~~g~------~~~~~~dl---------- 420 (553)
..+ .+.. .+.+-... +.+....+.|. .+.....+
T Consensus 360 ~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~ 439 (652)
T PLN02903 360 VDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALVESL 439 (652)
T ss_pred eEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchhhcC
Confidence 000 0000 00000000 00000000110 00000000
Q ss_pred C--------------------------cHHHHHHhHHHH---HHhC------CccEEEeccCC------------cCCCC
Q 008808 421 N--------------------------TESERKLGQLVL---EKYG------TEFYILHRYPL------------AVRPF 453 (553)
Q Consensus 421 ~--------------------------~~~e~~l~~~v~---~~~~------~~~~ii~~~P~------------~~~pf 453 (553)
+ ......||.+-. +.++ ..|.||+|||. .++||
T Consensus 440 ~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPF 519 (652)
T PLN02903 440 SPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPF 519 (652)
T ss_pred CHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCceEecCCCC
Confidence 0 011233444321 1222 24789999996 47999
Q ss_pred CCcccCCCC-----cceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh----cHHHHHHHhhcCCCCcceeeec
Q 008808 454 YTMPCHDNS-----LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK----TISTYIDSFRYGAPPHGGFGVG 524 (553)
Q Consensus 454 y~~~~~~~~-----~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yl~a~~~G~pP~~G~GiG 524 (553)
|+|+++|- -.+.+|||++||.||+|||+|+||++.|+++|+..|++++ .+.+||+||+||+|||||+|+|
T Consensus 520 -Tap~~~d~~~l~~~~a~~YDLVlNG~EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG~alG 598 (652)
T PLN02903 520 -TAPNPEDMGDLSSARALAYDMVYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAYG 598 (652)
T ss_pred -CCCCCcchhhhhhhhhhcceeEecceeeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeec
Confidence 99977653 2467999999999999999999999999999999999875 4689999999999999999999
Q ss_pred HHHHHHHHcCCCCccccccccCCCCC
Q 008808 525 LERVVMLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 525 idRLvm~l~g~~nIrdv~~FPr~p~r 550 (553)
+|||+|+|+|.+||||||+||++.+-
T Consensus 599 ldRlvmll~~~~~IrdviaFPKt~~g 624 (652)
T PLN02903 599 LDRLVMLLAGAKSIRDVIAFPKTTTA 624 (652)
T ss_pred HHHHHHHHcCCCchHheEecCCCCCc
Confidence 99999999999999999999998753
No 25
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.2e-86 Score=730.24 Aligned_cols=430 Identities=30% Similarity=0.515 Sum_probs=337.7
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|+++...++|++|+|+|||+++|.+| +++|++|||+++.||||++.. .++++++..|+.||+|.|+|+|..+
T Consensus 6 ~~~~~l~~~~~g~~V~l~GwV~~~R~~g-~l~Fi~LrD~~g~iQ~v~~~~-----~~~~~~~~~l~~es~V~V~G~v~~~ 79 (588)
T PRK00476 6 HYCGELRESHVGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPD-----AEAFEVAESLRSEYVIQVTGTVRAR 79 (588)
T ss_pred eeHHHhhHHhCCCEEEEEEEEEEEEeCC-CeEEEEEEeCCceEEEEEeCC-----HHHHHHHhCCCCCCEEEEEEEEEec
Confidence 5677888888999999999999999999 999999999999999999751 4567888999999999999999875
Q ss_pred C-Ccc--CCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHH
Q 008808 173 D-VEI--KGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIF 248 (553)
Q Consensus 173 ~-~~~--~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if 248 (553)
+ ..+ +..+|++||.++++.|||+|. + |+.+.+.. .++.++|+++||||||++.++++|
T Consensus 80 ~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~-----------------~~~~~~Rl~~R~LdlR~~~~~~~l 141 (588)
T PRK00476 80 PEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEE-----------------DVSEELRLKYRYLDLRRPEMQKNL 141 (588)
T ss_pred CCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccc-----------------cCChhhhhhcceEeecCHHHHHHH
Confidence 4 222 234678999999999999998 6 88764321 257899999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeec---CCCCceecccChhhHhhhcccCCCceeEEEeceec
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR 325 (553)
++||+|++++|+||.++||+||+||+|+.++++ ||.+|.|. +.+..+||+||||||||+||++|++||||||||||
T Consensus 142 ~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~e-ga~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR 220 (588)
T PRK00476 142 KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPE-GARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFR 220 (588)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCeeecCCCC-CCccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceee
Confidence 999999999999999999999999999977666 57789876 67888899999999999999999999999999999
Q ss_pred CCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHhhhcCC----------
Q 008808 326 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV----------CKKELEAVAKQYP---------- 385 (553)
Q Consensus 326 ~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~----------~~~~i~~~~~~~~---------- 385 (553)
||+++++||+ |||||||||+|. +|+|+|+++|+|++++++.+.+. |..-++..+..-|
T Consensus 221 ~E~~~~~r~~-EFt~le~e~af~-~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~D 298 (588)
T PRK00476 221 DEDLRADRQP-EFTQIDIEMSFV-TQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVD 298 (588)
T ss_pred cCCCCCCcCc-ccccceeeecCC-CHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehh
Confidence 9999898886 999999999998 69999999999999999876531 1111111111111
Q ss_pred ---------Ccc-------------ccCCC--CCc-ccCHHHHHHHHHHcCCC-----------C-CCC-----------
Q 008808 386 ---------FEP-------------LKYKP--KTL-RLTFEEGVQMLKDAGVE-----------I-DPL----------- 417 (553)
Q Consensus 386 ---------~~~-------------~~~~~--~~~-~i~~~ea~~ll~~~g~~-----------~-~~~----------- 417 (553)
+.. +.+.. ... +-.+++..++.+..|.. . .+.
T Consensus 299 VT~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~l~~~~akflsee~~~~ 378 (588)
T PRK00476 299 VTDLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELAA 378 (588)
T ss_pred HHHHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCCCcCchhhcCCHHHHHH
Confidence 000 00000 000 11122222223322210 0 000
Q ss_pred ---------CC-------CCcHHHHHHhHHHHH---Hh------CCccEEEeccCC------------cCCCCCCcccCC
Q 008808 418 ---------GD-------LNTESERKLGQLVLE---KY------GTEFYILHRYPL------------AVRPFYTMPCHD 460 (553)
Q Consensus 418 ---------~d-------l~~~~e~~l~~~v~~---~~------~~~~~ii~~~P~------------~~~pfy~~~~~~ 460 (553)
+| -.......||.+... .+ ...|.||+|||. .++|| |||+++
T Consensus 379 L~e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpF-T~p~~~ 457 (588)
T PRK00476 379 LLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPF-TMPKDE 457 (588)
T ss_pred HHHHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCC-CCcCcc
Confidence 01 000122345544321 11 134789999995 47999 899765
Q ss_pred C--------C--cceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh----cHHHHHHHhhcCCCCcceeeecHH
Q 008808 461 N--------S--LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK----TISTYIDSFRYGAPPHGGFGVGLE 526 (553)
Q Consensus 461 ~--------~--~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yl~a~~~G~pP~~G~GiGid 526 (553)
| | ..+++|||++||.||+|||+|+||++.|+++|+..|++++ .+.+||+||+||+|||||||+|+|
T Consensus 458 d~~~l~~~~p~~~~a~~~dlv~ng~E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~d 537 (588)
T PRK00476 458 DLDELETTDPGKARAYAYDLVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLD 537 (588)
T ss_pred ChhHhhcCCHHHhhhheeeeEEeeeeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHH
Confidence 3 3 3579999999999999999999999999999999999876 578999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccCCCCC
Q 008808 527 RVVMLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 527 RLvm~l~g~~nIrdv~~FPr~p~r 550 (553)
||+|+|+|.+||||||+||++.+-
T Consensus 538 r~~~~~~~~~~irdvi~fp~~~~g 561 (588)
T PRK00476 538 RLVMLLAGADSIRDVIAFPKTQSA 561 (588)
T ss_pred HHHHHHcCCccHHheeeccCCCCc
Confidence 999999999999999999998763
No 26
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=1.1e-85 Score=728.17 Aligned_cols=446 Identities=26% Similarity=0.411 Sum_probs=334.7
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|+..+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+. .+.++++++..|+.||+|.|+|+|..
T Consensus 6 ~~~cg~l~~~~~g~~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~--~~~~~~~~~~~L~~EsvV~V~G~v~~ 82 (706)
T PRK12820 6 RSFCGHLSLDDTGREVCLAGWVDAFRDHG-ELLFIHLRDRNGFIQAVFSPEA--APADVYELAASLRAEFCVALQGEVQK 82 (706)
T ss_pred ccccccCChhhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCCc--CCHHHHHHHhcCCCCCEEEEEeEEec
Confidence 36799999999999999999999999999 8999999999999999998652 45678888899999999999999988
Q ss_pred CCCcc---CCCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHH
Q 008808 172 PDVEI---KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIF 248 (553)
Q Consensus 172 ~~~~~---~~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if 248 (553)
++.+. +..|+++||.++++.||++|...|+.+.+...+.. +.+ .....++.++|++|||||||++.++++|
T Consensus 83 r~~~~~n~~~~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~----~~~--~~~~~~~e~~Rl~~RyLDLR~~~~~~~l 156 (706)
T PRK12820 83 RLEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAG----AGS--AGADAVNEDLRLQYRYLDIRRPAMQDHL 156 (706)
T ss_pred cCccccCCCCCCCcEEEEeeEEEEEecCCCCCCCCcccccccc----ccc--ccccccCHhhhhhCceeecCCHHHHHHH
Confidence 54222 23457899999999999999644776654321000 000 1122367899999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCC-CceecccChhhHhhhcccCCCceeEEEeceec
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKG-QSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~-~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR 325 (553)
++||+|++.||+||.++||+||+||+|+.++++| |.+|.+ .++. ..++|+||||||||+||++|++||||||||||
T Consensus 157 r~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eG-Ar~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR 235 (706)
T PRK12820 157 AKRHRIIKCARDFLDSRGFLEIETPILTKSTPEG-ARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFR 235 (706)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCC-CcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhc
Confidence 9999999999999999999999999999876665 666543 3344 44569999999999999999999999999999
Q ss_pred CCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHhhhcCCC----------
Q 008808 326 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN---------VCKKELEAVAKQYPF---------- 386 (553)
Q Consensus 326 ~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~---------~~~~~i~~~~~~~~~---------- 386 (553)
||+++++|| ||||||||||+|. +++|+|+++|+|+.++++.... .|..-++..+..-|-
T Consensus 236 ~E~~~t~r~-pEFT~LE~E~af~-d~~dvm~l~E~li~~v~~~~~~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d~ 313 (706)
T PRK12820 236 DEDLRPNRQ-PEFTQLDIEASFI-DEEFIFELIEELTARMFAIGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFADA 313 (706)
T ss_pred CCCCCCCcC-ccccccceeeccC-CHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEHHHHHHHhCCCCCccccCcEEEEH
Confidence 999988777 9999999999998 7999999999999999852210 022222222111110
Q ss_pred ---------cc-------------ccCCCCCcccC---HHHHH--HHHHHcCCC------C------CCCCC-CC-----
Q 008808 387 ---------EP-------------LKYKPKTLRLT---FEEGV--QMLKDAGVE------I------DPLGD-LN----- 421 (553)
Q Consensus 387 ---------~~-------------~~~~~~~~~i~---~~ea~--~ll~~~g~~------~------~~~~d-l~----- 421 (553)
.. +.+...-..++ ..+++ ++.+..|.. . .+... ++
T Consensus 314 ~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 393 (706)
T PRK12820 314 TDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEAGGLDSNIVQFFSADEKE 393 (706)
T ss_pred HHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECCCCcCCchhccCCHHHHH
Confidence 00 00000000011 11101 111222110 0 00000 00
Q ss_pred ----------------------cHHHHHHhHHHH---HHhC------CccEEEeccCC-----------cCCCCCCcccC
Q 008808 422 ----------------------TESERKLGQLVL---EKYG------TEFYILHRYPL-----------AVRPFYTMPCH 459 (553)
Q Consensus 422 ----------------------~~~e~~l~~~v~---~~~~------~~~~ii~~~P~-----------~~~pfy~~~~~ 459 (553)
......||.+-. +.++ ..|.||+|||. .++|| |||++
T Consensus 394 ~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPlfe~~~e~~~~a~HHPF-T~p~~ 472 (706)
T PRK12820 394 ALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDDGGVTSSHHPF-TAPDR 472 (706)
T ss_pred HHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCcccCCCCCCeeeeeCCC-CCcCc
Confidence 012234554321 1121 23679999997 46999 89976
Q ss_pred CC--------C--cceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhc----HHHHHHHhhcCCCCcceeeecH
Q 008808 460 DN--------S--LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKT----ISTYIDSFRYGAPPHGGFGVGL 525 (553)
Q Consensus 460 ~~--------~--~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~----~~~yl~a~~~G~pP~~G~GiGi 525 (553)
+| | -.+.+|||++||.||+|||+|+||++.|++.|+..|++++. +.+||+||+||+|||||+|+|+
T Consensus 473 ~d~~~l~~~~p~~~~~~~YDLV~nG~E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG~a~G~ 552 (706)
T PRK12820 473 EDFDPGDIEELLDLRSRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGL 552 (706)
T ss_pred cChhhhccCChHHhhhheeeEEecceeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeccH
Confidence 53 2 13679999999999999999999999999999999998754 5689999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccCCCCC
Q 008808 526 ERVVMLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 526 dRLvm~l~g~~nIrdv~~FPr~p~r 550 (553)
|||+|+|+|.+||||||+||++.+-
T Consensus 553 dRlvm~l~~~~sirdviaFPK~~~g 577 (706)
T PRK12820 553 DRVVSMILQTPSIREVIAFPKNRSA 577 (706)
T ss_pred HHHHHHHcCCccHHHhcccCCCCCC
Confidence 9999999999999999999998653
No 27
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.6e-84 Score=673.45 Aligned_cols=318 Identities=46% Similarity=0.763 Sum_probs=295.4
Q ss_pred CCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhH
Q 008808 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLH 305 (553)
Q Consensus 226 ~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~ 305 (553)
++.++|+++||||||++..++++++||.|++.+|+||.++||+||+||+|+++++++++.+|.++|||.++||+||||||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~~~~~yL~~Spql~ 81 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVSYFGKPAYLAQSPQLY 81 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccccccCCCcceecCCHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCC
Q 008808 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (553)
Q Consensus 306 lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~ 385 (553)
||++++| ++|||+||||||||+++++|||||||||||||+|+++|+|+|+++|+||++++..+.+.++.++..+. ...
T Consensus 82 lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~-~~~ 159 (322)
T cd00776 82 KEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN-QLN 159 (322)
T ss_pred HHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh-ccC
Confidence 9999988 99999999999999988899999999999999998789999999999999999999998888776541 222
Q ss_pred CccccCCCCCcccCHHHHHHHHHHcCC--CCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCc
Q 008808 386 FEPLKYKPKTLRLTFEEGVQMLKDAGV--EIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSL 463 (553)
Q Consensus 386 ~~~~~~~~~~~~i~~~ea~~ll~~~g~--~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~ 463 (553)
.....+..||++++|.||++++++.|. +..++.++++++|+.|+..++ ..++||+|||.+++|||+++++++|+
T Consensus 160 ~~~~~~~~~~~rit~~eA~~~l~~~~~~~~~~~~~~l~~~~e~~l~~~~~----~~p~fi~~~P~~~~pfy~~~~~~~~~ 235 (322)
T cd00776 160 RELLKPLEPFPRITYDEAIELLREKGVEEEVKWGEDLSTEHERLLGEIVK----GDPVFVTDYPKEIKPFYMKPDDDNPE 235 (322)
T ss_pred cccccCCCCceEEEHHHHHHHHHHcCCCCCCCccchhcHHHHHHHHHHhC----CCcEEEECCccccCCceeeecCCCCC
Confidence 223345578999999999999999887 667777899999999987664 45678899999999999999999999
Q ss_pred ceeEEEEEeCC-EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccc
Q 008808 464 YSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTS 542 (553)
Q Consensus 464 ~~~~fdl~~~G-~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~ 542 (553)
+++|||||++| +||+|||+|+|||++|++|++++|+++..++|||+|+++|+|||||||||||||+|++||++|||||+
T Consensus 236 ~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~ 315 (322)
T cd00776 236 TVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAI 315 (322)
T ss_pred eeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCCCchheEe
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 008808 543 LYPRDPL 549 (553)
Q Consensus 543 ~FPr~p~ 549 (553)
+|||+|+
T Consensus 316 ~FPr~~~ 322 (322)
T cd00776 316 LFPRDPK 322 (322)
T ss_pred ecCCCCC
Confidence 9999985
No 28
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-82 Score=632.39 Aligned_cols=428 Identities=27% Similarity=0.433 Sum_probs=370.6
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.+-.+|.+. ..+.|+.|+|.||||+.|.+. +|+|++|||+++.||||++.+.+. + .+ +-.|..+|.|.|.|++
T Consensus 110 ak~iki~~s-~~~r~qrVkv~gWVhrlR~qk-~l~FivLrdg~gflqCVl~~kl~~-~---yd-~~~Ls~essv~vYG~i 182 (545)
T KOG0555|consen 110 AKKIKIYDS-TENRGQRVKVFGWVHRLRRQK-SLIFIVLRDGTGFLQCVLSDKLCQ-S---YD-ALTLSTESSVTVYGTI 182 (545)
T ss_pred hheeeeccc-ccccCceEEeehhhHhhhhcC-ceEEEEEecCCceEEEEEcchhhh-h---hc-cccccccceEEEEEEE
Confidence 445666654 468899999999999999995 999999999999999999976431 1 11 1249999999999999
Q ss_pred ecCCCccCCCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 170 SVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
++.+..+ ++.+..||.|.-+.|++.|...-+.. ... .-++.+..|+||||-+|....+.+++
T Consensus 183 ~~~p~GK-~apgghEl~vdy~Eiig~Apag~~~n---~ln--------------e~s~~~~~LdnrHl~iRge~~s~vLK 244 (545)
T KOG0555|consen 183 KKLPEGK-SAPGGHELNVDYWEIIGLAPAGGFDN---PLN--------------EESDVDVLLDNRHLVIRGENASKVLK 244 (545)
T ss_pred ecCcCCC-CCCCCceEEeeeeeeecccCCCcccc---ccc--------------ccCCcceEeccceeEEechhHHHHHH
Confidence 9887653 45678999999999998874331110 000 01467889999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~ 329 (553)
+|+.+++.+|+++.++|+.||..|.|+....|||++.|+++|+|.++||+||.||||+.++.+ +++||+|.++||+|.|
T Consensus 245 ~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLTQSSQLYLEtclpA-lgdvy~I~~SyRAEkS 323 (545)
T KOG0555|consen 245 ARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLTQSSQLYLETCLPA-LGDVYCIQQSYRAEKS 323 (545)
T ss_pred HHHHHHHHHHHHHHhcCceecCCCceEEEEecCcceEEeecccCchhhccchhHHHHHHhhhh-cCceeEecHhhhhhhh
Confidence 999999999999999999999999999888999999999999999999999999999999766 9999999999999999
Q ss_pred CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhhhcCCCccccCCCCCcccCHHHHHHHHH
Q 008808 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKK-ELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (553)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~ 408 (553)
+|+|||.|||++|+|++|. ++.++|+-+|.|+...+..+.+.-.. .++.++..+.. -..||.|+.|+|||+.|+
T Consensus 324 rTRRHLsEytHVEaE~afl-tfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~----P~~PFkRm~Y~dAI~wLk 398 (545)
T KOG0555|consen 324 RTRRHLSEYTHVEAECAFL-TFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFKA----PKRPFKRMNYSDAIEWLK 398 (545)
T ss_pred hhhhhhhhheeeeeecccc-cHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCCC----CCCchhcCCHHHHHHHHH
Confidence 9999999999999999998 69999999999999999988764322 33333322211 124789999999999999
Q ss_pred HcCCCC------CCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEEeece
Q 008808 409 DAGVEI------DPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGA 481 (553)
Q Consensus 409 ~~g~~~------~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei~~G~ 481 (553)
++++.- ..++|+....||.+...| +. ++++++||..+++||++.+.+||++|+|.|++++| +||++|+
T Consensus 399 e~~vk~edg~~fefGdDI~eAaER~mtdtI----g~-PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGS 473 (545)
T KOG0555|consen 399 EHDVKKEDGTDFEFGDDIPEAAERKMTDTI----GV-PIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGS 473 (545)
T ss_pred hcCCcCccCcccccccchhhHHHHhhhhhc----CC-ceEEeeccccccceeeecccCccccceeeeeecCCccccccce
Confidence 997644 445778888898887544 44 45678999999999999999999999999999999 8999999
Q ss_pred eccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 482 QRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 482 ~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|+.|.++|.+.|+..|+|+.+|.||++..+||.-||||+|||+||++||||+-.+||||++|||-.+|++|
T Consensus 474 MRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~P 545 (545)
T KOG0555|consen 474 MRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCTP 545 (545)
T ss_pred eeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 29
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=5e-80 Score=642.33 Aligned_cols=317 Identities=29% Similarity=0.450 Sum_probs=285.4
Q ss_pred CCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCC---C----ccceeecCCCCceec
Q 008808 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG---G----SAVFRLDYKGQSACL 298 (553)
Q Consensus 226 ~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~eg---g----a~~F~v~~~~~~~~L 298 (553)
.+.++|++||++|+|++..+++|++||+|++.+|+||.++||+||+||+|+++.+++ | +..|.++|||+++||
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL 87 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYL 87 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceee
Confidence 478999999999999999999999999999999999999999999999998765542 2 335677899999999
Q ss_pred ccChhhHhhhcccCCCceeEEEeceecCCCCCC--CCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008808 299 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKE 376 (553)
Q Consensus 299 ~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t--~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~ 376 (553)
++|||||||++ ++|++||||||||||||++++ +|||||||||||||+|. ||+|+|+++|+|+++++..+.++++.+
T Consensus 88 ~~Spql~k~ll-~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~-d~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 88 ADSMILHKQLA-LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGA-DLDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred ccCHHHHHHHH-HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcC-CHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999998865 566999999999999999976 79999999999999997 799999999999999999999999888
Q ss_pred HHHhhhcCCCccccCCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCc
Q 008808 377 LEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM 456 (553)
Q Consensus 377 i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~ 456 (553)
+..++...+ .+..||+||||.||+++|++.|++..+..++++..|+.|+.++ +.| +||+|||.+++|||++
T Consensus 166 i~~~~~~~~----~~~~p~~rit~~eA~~~l~~~~~~~~~~~~l~~~~E~~l~~~~----~~p-~fi~~yP~~~~pfy~~ 236 (335)
T PRK06462 166 LEFFGRDLP----HLKRPFKRITHKEAVEILNEEGCRGIDLEELGSEGEKSLSEHF----EEP-FWIIDIPKGSREFYDR 236 (335)
T ss_pred HHhcCCccc----cCCCCCeEEEHHHHHHHHHhcCCCcchHHHHhHHHHHHHHHHh----CCC-EEEECCChhhCCcccc
Confidence 776643322 2346899999999999999999877777778888898887654 455 5678999999999999
Q ss_pred ccCCCCcceeEEEEEe--CCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcC
Q 008808 457 PCHDNSLYSNSFDVFI--RGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 457 ~~~~~~~~~~~fdl~~--~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g 534 (553)
+++++|++++|||||+ +++||++|++|+|+++++.++++++|+++..++|||+|++||+|||||||||||||+|++||
T Consensus 237 ~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g 316 (335)
T PRK06462 237 EDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICG 316 (335)
T ss_pred cCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcC
Confidence 8899999999999999 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCCCCCCCC
Q 008808 535 LNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 535 ~~nIrdv~~FPr~p~rl~p 553 (553)
++|||||++|||+|++..+
T Consensus 317 ~~~Irdv~~FPr~~g~~~~ 335 (335)
T PRK06462 317 LRHIREVQPFPRVPGIVAL 335 (335)
T ss_pred CCchheeeeccCCCCCCCC
Confidence 9999999999999998654
No 30
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=2.2e-80 Score=647.87 Aligned_cols=313 Identities=40% Similarity=0.663 Sum_probs=260.9
Q ss_pred CccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeec-----CCCCceecccC
Q 008808 227 NQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD-----YKGQSACLAQS 301 (553)
Q Consensus 227 ~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~-----~~~~~~~L~~S 301 (553)
++|+|++|||||+|++..+++|++||.|+++||+||.++||+||+||+|++++++||+++|.|+ |+|.++||+||
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~S 80 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQS 80 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SS
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 008808 302 PQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVA 381 (553)
Q Consensus 302 Pql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~ 381 (553)
||||||+++++|++||||||||||||+++|.|||||||||||||+|. +++++|+++|+||+++++.+.++.+. . .+
T Consensus 81 pql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~-~~~~lm~~~e~li~~i~~~~~~~~~~-~-~~- 156 (335)
T PF00152_consen 81 PQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFA-DYDDLMDLIEELIKYIFKELLENAKE-L-SL- 156 (335)
T ss_dssp SHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETS-SHHHHHHHHHHHHHHHHHHHHHHHHH-H-HT-
T ss_pred hHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccC-cHHHhHHHHHHHHHHHHHHHhccCcc-c-cc-
Confidence 99999999999999999999999999998999999999999999998 68999999999999999998765221 1 11
Q ss_pred hcCCCccccCCCCCcccCHHHHHHHHHHcCCCCCCCC---------CCCcHHHHHHhHHHHH----HhCCccEEEeccCC
Q 008808 382 KQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLG---------DLNTESERKLGQLVLE----KYGTEFYILHRYPL 448 (553)
Q Consensus 382 ~~~~~~~~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~---------dl~~~~e~~l~~~v~~----~~~~~~~ii~~~P~ 448 (553)
.+++..+|++++|.+|++.+...+.+..... +......+.|+..+++ ....+++||+|||.
T Consensus 157 ------~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~~p~fI~~~P~ 230 (335)
T PF00152_consen 157 ------NIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFTDPVFITDYPA 230 (335)
T ss_dssp ------CEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSSSEEEEEEEBG
T ss_pred ------cccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 3445567999999999999888765544311 0000112344444444 34577888999999
Q ss_pred cCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhc----HHHHHHHhhcCCCCcceeeec
Q 008808 449 AVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKT----ISTYIDSFRYGAPPHGGFGVG 524 (553)
Q Consensus 449 ~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~----~~~yl~a~~~G~pP~~G~GiG 524 (553)
.++|||++...+++++++|||||++|+||||||+|+|||++|++||++.|++... ++|||+|+++|+|||||||||
T Consensus 231 ~~~pf~~~~~~~~~~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG 310 (335)
T PF00152_consen 231 EQSPFYKPPNDDDPGVAERFDLYIPGGEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLG 310 (335)
T ss_dssp GGSTTTBBBSSSTTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEE
T ss_pred ccCcccccccccccccccceeEEEeCEEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccCcceeh
Confidence 9999987766656699999999999999999999999999999999999987766 899999999999999999999
Q ss_pred HHHHHHHHcCCCCccccccccCCCC
Q 008808 525 LERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 525 idRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
||||+|++||++|||||++|||+.+
T Consensus 311 ~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 311 LERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp HHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred HHHHHHHHcCCCcHHheecCCCCCC
Confidence 9999999999999999999999864
No 31
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-77 Score=604.79 Aligned_cols=409 Identities=28% Similarity=0.477 Sum_probs=356.5
Q ss_pred ccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCC--eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc
Q 008808 98 LNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE 175 (553)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~--~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~ 175 (553)
+.....|++++|.|||.++|.+| |.+|++|.||+ ..+|||++.. ..+.+..|++|.|+|.+..+
T Consensus 14 ~~~~~~g~~~~i~GWvKsvr~~~-~~~Fl~i~DGs~~~~lQvVv~~~----------~~q~la~Gt~i~~~g~l~~~--- 79 (446)
T KOG0554|consen 14 LGHPRAGDTISIGGWVKSVRKLK-KVTFLDINDGSCPSPLQVVVDSE----------QSQLLATGTCISAEGVLKVS--- 79 (446)
T ss_pred ccCCCCCCceeecchhhhccccc-ceEEEEecCCCCCcceEEEechH----------HhhhccccceEEEEeeEEec---
Confidence 34567899999999999999999 89999999998 4899999873 34679999999999999877
Q ss_pred cCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHH
Q 008808 176 IKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254 (553)
Q Consensus 176 ~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i 254 (553)
++..+++|+.+.+|.+++.+.+. |++.+.. .++.--+.-||..|+....+++|+||.+
T Consensus 80 -~~~~q~iel~~eki~~vG~v~~~ypl~Kk~l--------------------t~e~LR~~~HLR~Rt~~~~av~RvRs~~ 138 (446)
T KOG0554|consen 80 -KGAKQQIELNAEKIKVVGTVDESYPLQKKKL--------------------TPEMLRDKLHLRSRTAKVGAVLRVRSAL 138 (446)
T ss_pred -cchheeeeeeeeEEEEEeecCCCCCCccccC--------------------CHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 46678899999999999999888 8765433 2344446778999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEecceeeccCCCCCccceee--------cCCCCceecccChhhHhhhcccCCCceeEEEeceecC
Q 008808 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (553)
Q Consensus 255 ~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--------~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~ 326 (553)
..+++.||.+++|++|+||+|+.+.|||+.+.|.| +|||+++||++|.|||++. ++.++.|||.+||+|||
T Consensus 139 ~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~-~a~~LsrvyTfgP~FRA 217 (446)
T KOG0554|consen 139 AFATHSFFQSHDFTYINTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA-MACALSRVYTFGPTFRA 217 (446)
T ss_pred HHHHHHHHHHcCceEecCcEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceehHHH-HHhhhcceEeeccceec
Confidence 99999999999999999999999999999999976 4799999999999999995 57789999999999999
Q ss_pred CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCC-C--ccc--cCCCCCcccCHH
Q 008808 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP-F--EPL--KYKPKTLRLTFE 401 (553)
Q Consensus 327 E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~-~--~~~--~~~~~~~~i~~~ 401 (553)
|+|+++|||.||||||.|++|++.++|+|+++|.+++++++.+.++|....+...++.. . .++ ....+|.+++|.
T Consensus 218 EnS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYt 297 (446)
T KOG0554|consen 218 ENSHTSRHLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYT 297 (446)
T ss_pred ccCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHH
Confidence 99999999999999999999997799999999999999999999998877765433221 1 111 122357899999
Q ss_pred HHHHHHHHcCC-----CCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-E
Q 008808 402 EGVQMLKDAGV-----EIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-E 475 (553)
Q Consensus 402 ea~~ll~~~g~-----~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~ 475 (553)
||+++|++++. ...|+.||++++|+.|.. +.++.| +||+|||..++|||++.+.+++ ...+|||+|+| +
T Consensus 298 eAie~L~~a~t~~fk~~~kwG~~l~~ehe~yL~~---~~~~~P-VfV~dYP~~iKpFYMr~n~~~~-tVaa~DlLVP~vG 372 (446)
T KOG0554|consen 298 EAIELLQKAVTKKFKTPPKWGIDLSTEHEKYLVE---ECFKKP-VFVTDYPKGIKPFYMRLNDDGK-TVAAFDLLVPGVG 372 (446)
T ss_pred HHHHHHHHhcccccccCcccccccchhhHHHHHH---HhcCCC-EEEEeccccccceEEEecCCCC-eeEEEEeecccch
Confidence 99999998762 457788999999999853 445455 5678999999999976655444 77899999999 8
Q ss_pred EEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCC
Q 008808 476 EIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRI 551 (553)
Q Consensus 476 Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl 551 (553)
||++|++|+.+ .+|+++.|..++.++|||+.++||.+||||||||+||++.+++|.+||||||+|||.|+..
T Consensus 373 EliGGSlREe~----~~~l~e~g~~~~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~ 444 (446)
T KOG0554|consen 373 ELIGGSLREER----KARLKERGLTREELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSA 444 (446)
T ss_pred hhcCcccchhh----HHHHHhcCCCccccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccc
Confidence 99999999999 6777889999999999999999999999999999999999999999999999999999865
No 32
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=2e-74 Score=593.24 Aligned_cols=281 Identities=21% Similarity=0.354 Sum_probs=247.0
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeecc-CCCCCccceeecCCC-----CceecccChhhHhhhcccCCCceeEEEe
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-SSEGGSAVFRLDYKG-----QSACLAQSPQLHKQMSICGDFGRVFETG 321 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~-~~egga~~F~v~~~~-----~~~~L~~SPql~lk~li~~g~~rVfeIg 321 (553)
+++||.|++.+|+||.++||+||+||+|+++ ++++|+++|+++||+ +++||+||||||||+++++|++||||||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 4789999999999999999999999999987 588899999999876 6999999999999999999999999999
Q ss_pred ceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCC--------
Q 008808 322 PVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP-------- 393 (553)
Q Consensus 322 ~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~-------- 393 (553)
||||||++ ++||||||||||||++|. ||+|+|+++|+|+++++..+. .|+..+.+.+
T Consensus 81 p~FRaE~~-~~rHl~EFtmLE~e~~~~-d~~d~m~~~e~li~~i~~~~~-------------~~~~~it~~ea~~~~~~~ 145 (304)
T TIGR00462 81 KVFRNGER-GRRHNPEFTMLEWYRPGF-DYHDLMDEVEALLQELLGDPF-------------APWERLSYQEAFLRYAGI 145 (304)
T ss_pred CceeCCCC-CCCcccHHHhHHHHHHcC-CHHHHHHHHHHHHHHHHHhcC-------------CCcEEEEHHHHHHHHhCC
Confidence 99999998 689999999999999997 799999999999999987521 0111111100
Q ss_pred CCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCc-cEEEeccCCcCCCCCCcccCCCCcceeEEEEEe
Q 008808 394 KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTE-FYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFI 472 (553)
Q Consensus 394 ~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~-~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~ 472 (553)
++...+..++..++++.|+++++..|+++.+|+.|+++|+++++.+ ++||+|||..++||| +++++||++++|||||+
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~~-~~~~~~~~~~~rfdl~~ 224 (304)
T TIGR00462 146 DPLTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALA-RISPDDPRVAERFELYI 224 (304)
T ss_pred CcccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcCc-cccCCCCCeeEEEEEEE
Confidence 1223345555567888898888788999999999999999999643 678899999999995 78999999999999999
Q ss_pred CCEEEeeceeccCCHHHHHHHHHH-------cCCChhcH-HHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccc
Q 008808 473 RGEEIISGAQRIHIPEFLAERAQA-------CGIDVKTI-STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLY 544 (553)
Q Consensus 473 ~G~Ei~~G~~r~~d~~~l~~r~~~-------~g~~~~~~-~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~F 544 (553)
+|+||+|||+|+|||.+|++|+++ .|+++..+ +|||+|++||+|||||||||||||+|++||++|||+|++|
T Consensus 225 ~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 225 KGLELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred CCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 999999999999999999999965 78888777 7899999999999999999999999999999999999998
No 33
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-73 Score=584.48 Aligned_cols=420 Identities=26% Similarity=0.419 Sum_probs=331.5
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|....+|+.|.++|||...|.++ .+.|..|||..|.||+.++.+... ...+....++.||+|.|+|+|+.
T Consensus 35 t~~~~el~~~~vg~kv~l~GWl~~~~~~k-~~~F~~LRD~~G~vq~lls~~s~~---l~~~~~~~v~~e~vv~v~gtvv~ 110 (628)
T KOG2411|consen 35 TSLCGELSVNDVGKKVVLCGWLELHRVHK-MLTFFNLRDAYGIVQQLLSPDSFP---LAQKLENDVPLEDVVQVEGTVVS 110 (628)
T ss_pred hccchhhccCccCCEEEEeeeeeeeeccc-cceEEEeeccCcceEEEecchhhh---HHhcccCCCChhheEeeeeeEec
Confidence 36788898899999999999999999997 899999999999999999876310 01123356999999999999875
Q ss_pred C-C--CccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHH
Q 008808 172 P-D--VEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGI 247 (553)
Q Consensus 172 ~-~--~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~i 247 (553)
. . .+.+..||.+|+...++++++++... |+.+.|...- -.+.+..+||++||||||.+.+|..
T Consensus 111 Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~l-------------d~~~~er~rl~~RyldLR~~kmq~n 177 (628)
T KOG2411|consen 111 RPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKEL-------------DDLAGERIRLRFRYLDLRRPKMQNN 177 (628)
T ss_pred ccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhh-------------hccccccccchhhhhhhccHHHHHH
Confidence 5 2 34456788899999999999999888 9988776411 0135678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHh-CCcEEEecceeeccCCCCCccceeecC---CCCceecccChhhHhhhcccCCCceeEEEece
Q 008808 248 FRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDY---KGQSACLAQSPQLHKQMSICGDFGRVFETGPV 323 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~-~gF~EV~TP~l~~~~~egga~~F~v~~---~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~ 323 (553)
+|+||.++..+|+||.+ .||+||+||+|.. .++|||..|.|+. -|..+.|.||||.||||||+||++|+|||++|
T Consensus 178 LrlRS~~v~~iR~yl~n~~GFvevETPtLFk-rTPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARC 256 (628)
T KOG2411|consen 178 LRLRSNVVKKIRRYLNNRHGFVEVETPTLFK-RTPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARC 256 (628)
T ss_pred HHHHHHHHHHHHHHHhhhcCeeeccCcchhc-cCCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhh
Confidence 99999999999999976 5699999999976 5788999998864 37889999999999999999999999999999
Q ss_pred ecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHH
Q 008808 324 FRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403 (553)
Q Consensus 324 FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea 403 (553)
||+|+++..|+ |||||+|+||+|. +.+++|+++|+|+.+++....+. ....||+||||.+|
T Consensus 257 fRDEdlR~DRQ-PEFTQvD~EMsF~-~~~dim~liEdll~~~ws~~k~~-----------------~l~~PF~riTY~~A 317 (628)
T KOG2411|consen 257 FRDEDLRADRQ-PEFTQVDMEMSFT-DQEDIMKLIEDLLRYVWSEDKGI-----------------QLPVPFPRITYADA 317 (628)
T ss_pred hcccccCcccC-CcceeeeeEEecc-CHHHHHHHHHHHHHHhchhhcCC-----------------CCCCCcccccHHHH
Confidence 99999998888 9999999999998 58999999999999998776531 11123344444444
Q ss_pred HH------------------------------------------------------------------------------
Q 008808 404 VQ------------------------------------------------------------------------------ 405 (553)
Q Consensus 404 ~~------------------------------------------------------------------------------ 405 (553)
++
T Consensus 318 m~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~ 397 (628)
T KOG2411|consen 318 MDKYGSDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDA 397 (628)
T ss_pred HHHhCCCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccc
Confidence 32
Q ss_pred -------------------HHHHcCCCCCCCCCC----CcHHHHHHhHHH--------HH---HhCCccEEEeccCCc--
Q 008808 406 -------------------MLKDAGVEIDPLGDL----NTESERKLGQLV--------LE---KYGTEFYILHRYPLA-- 449 (553)
Q Consensus 406 -------------------ll~~~g~~~~~~~dl----~~~~e~~l~~~v--------~~---~~~~~~~ii~~~P~~-- 449 (553)
+.+..|...++.--+ ..+.-..||++- +. +-..-+.||.|||..
T Consensus 398 ~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~l~~~~l~d~~~~~~lWVvDFPLF~p 477 (628)
T KOG2411|consen 398 NKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQDLLVKNLRDKSKFSFLWVVDFPLFSP 477 (628)
T ss_pred hhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHHHHHhccccccccceEEEEEeccccCc
Confidence 111111100000000 000001233321 10 011236789999964
Q ss_pred -----------CCCCCCcccCCCC---------cceeEEEEEeCCEEEeeceeccCCHHHHHHHHH-HcCCChhcHH--H
Q 008808 450 -----------VRPFYTMPCHDNS---------LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQ-ACGIDVKTIS--T 506 (553)
Q Consensus 450 -----------~~pfy~~~~~~~~---------~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~-~~g~~~~~~~--~ 506 (553)
++|| |+|+++|- -.+..|||++||.||++|+.|+||++.|+.-++ -.+++.+.+. .
T Consensus 478 ~~E~~q~L~StHHPF-TaP~~~Di~~L~s~p~~~rgqhYDlV~NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gH 556 (628)
T KOG2411|consen 478 WEEKNQRLESTHHPF-TAPHPKDIDLLESAPEKIRGQHYDLVVNGVELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGH 556 (628)
T ss_pred cccCCceeccccCCC-CCCChhhhhHhhcCchhhhcceeeeEEccEeecCceeEecCHHHHHHHHHHHhcCchhhhhHHH
Confidence 5899 99998752 235789999999999999999999999999998 4567666554 8
Q ss_pred HHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 507 YIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 507 yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
.|+||.+|+|||||+++|+|||+|+|||..+|||||+||+...
T Consensus 557 LL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDVIAFPKt~~ 599 (628)
T KOG2411|consen 557 LLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDVIAFPKTTT 599 (628)
T ss_pred HHHHhhcCCCCCCceeecHHHHHHHHcCCCchheeeeccccCC
Confidence 8999999999999999999999999999999999999998643
No 34
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=1.6e-73 Score=592.45 Aligned_cols=294 Identities=26% Similarity=0.434 Sum_probs=250.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHhhhcccCCCceeEE
Q 008808 242 LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFE 319 (553)
Q Consensus 242 ~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~lk~li~~g~~rVfe 319 (553)
+.++++|++||+|++.||+||.++||+||+||+|+++++++++.+|.+ +|++.++||+||||||||+++++|++|||+
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~ 81 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYE 81 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEE
Confidence 568999999999999999999999999999999987766667789988 789999999999999999999999999999
Q ss_pred EeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccC
Q 008808 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 399 (553)
Q Consensus 320 Ig~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 399 (553)
||||||||++ ++|||||||||||||++. +|+|+|+++|+|+++++..+.+.+ +++ +....+.+..||+|+|
T Consensus 82 i~~~FR~E~~-~~rHl~EFt~le~e~~~~-~~~~~m~~~e~li~~i~~~~~~~~--~~~-----~~~~~~~~~~pf~rit 152 (329)
T cd00775 82 IGRNFRNEGI-DLTHNPEFTMIEFYEAYA-DYNDMMDLTEDLFSGLVKKINGKT--KIE-----YGGKELDFTPPFKRVT 152 (329)
T ss_pred EeccccCCCC-CCCCCCceEEEEEeeecC-CHHHHHHHHHHHHHHHHHHHhCCc--eee-----cCCccccCCCCceEEE
Confidence 9999999998 689999999999999997 799999999999999998887643 121 1222234456899999
Q ss_pred HHHHHHHHHHcCCCCCCCCC-----------------------CCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCc
Q 008808 400 FEEGVQMLKDAGVEIDPLGD-----------------------LNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM 456 (553)
Q Consensus 400 ~~ea~~ll~~~g~~~~~~~d-----------------------l~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~ 456 (553)
|.||++.+ .|++.....+ ......+++++.|+++++.| +||+|||.+++|| +|
T Consensus 153 y~eA~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~~~~p-~fi~~yP~~~~~f-~~ 228 (329)
T cd00775 153 MVDALKEK--TGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTLIQP-TFIIDHPVEISPL-AK 228 (329)
T ss_pred HHHHHHHH--hCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhccccCCC-EEEECCChHhCcC-cC
Confidence 99999744 4654322211 22223445556667777754 6678999999999 56
Q ss_pred ccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCCCcceeeecHHHH
Q 008808 457 PCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAPPHGGFGVGLERV 528 (553)
Q Consensus 457 ~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~pP~~G~GiGidRL 528 (553)
++++||++++|||||++|+||+|||+|+|||.+|++|++. .|.++.. ++|||+|++||+|||||||||||||
T Consensus 229 ~~~~~~~~~~rfdl~~~G~Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGleRL 308 (329)
T cd00775 229 RHRSNPGLTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRL 308 (329)
T ss_pred cCCCCCCeeEEEEeEECCEEEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCCcEEecHHHH
Confidence 8889999999999999999999999999999999999975 3666543 6899999999999999999999999
Q ss_pred HHHHcCCCCccccccccCCC
Q 008808 529 VMLFCGLNNIRKTSLYPRDP 548 (553)
Q Consensus 529 vm~l~g~~nIrdv~~FPr~p 548 (553)
+|++||++|||+|++|||+-
T Consensus 309 ~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 309 VMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred HHHHcCCCcHHhcccCCCCC
Confidence 99999999999999999974
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=3.3e-72 Score=566.68 Aligned_cols=263 Identities=32% Similarity=0.562 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCC--CCceecccChhhHhhhcccCCCceeEEEeceec
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK--GQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~--~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR 325 (553)
|++||+|++.+|+||.++||+||+||+|+++++++|+.+|.++|+ |.++||+||||+|+|+++++|++|||+||||||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 579999999999999999999999999998888999999999988 999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHH
Q 008808 326 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 405 (553)
Q Consensus 326 ~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ 405 (553)
+|+ .|.||++|||||||||+|. +|+|+|+++|+|+++++..+.+.+...+. ....++..||+||+|.||++
T Consensus 81 ~e~-~~~~hl~EF~~le~e~~~~-~~~dvm~~~e~lv~~i~~~~~~~~~~~~~-------~~~~~~~~~~~rit~~ea~~ 151 (269)
T cd00669 81 NED-LRARHQPEFTMMDLEMAFA-DYEDVIELTERLVRHLAREVLGVTAVTYG-------FELEDFGLPFPRLTYREALE 151 (269)
T ss_pred CCC-CCCCcccceeEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhcccccccc-------ccccccCCCceEeeHHHHHH
Confidence 995 6999999999999999998 79999999999999999998877655442 11234556899999999997
Q ss_pred HHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccC
Q 008808 406 MLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIH 485 (553)
Q Consensus 406 ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~ 485 (553)
++. .++||+|||...+|||+++++++|++++|||||++|+||+|||+|+|
T Consensus 152 ~~~------------------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~Ei~~G~~r~~ 201 (269)
T cd00669 152 RYG------------------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGVEVGNGSSRLH 201 (269)
T ss_pred HhC------------------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCEEEeeCchhcC
Confidence 543 35788999999999999999889999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCChh----cHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 486 IPEFLAERAQACGIDVK----TISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 486 d~~~l~~r~~~~g~~~~----~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|+++|++|++++|++++ .++|||+|++||+|||||||||||||+|++||++|||||++|||++.
T Consensus 202 d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr~~~ 269 (269)
T cd00669 202 DPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMRR 269 (269)
T ss_pred CHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCCCCC
Confidence 99999999999999988 89999999999999999999999999999999999999999999873
No 36
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=1.7e-66 Score=534.84 Aligned_cols=287 Identities=20% Similarity=0.275 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC-CCCCccceeecCC------CCceecccChhhHhhhcccCCCcee
Q 008808 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-SEGGSAVFRLDYK------GQSACLAQSPQLHKQMSICGDFGRV 317 (553)
Q Consensus 245 ~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-~egga~~F~v~~~------~~~~~L~~SPql~lk~li~~g~~rV 317 (553)
..+|++|++|++.||+||.++||+||+||+|...+ .+.++.+|.++|+ |+.+||+||||+|+|+++++|++||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 46899999999999999999999999999997644 2334567988887 7999999999999999999999999
Q ss_pred EEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcc
Q 008808 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLR 397 (553)
Q Consensus 318 feIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 397 (553)
|+||||||||++ +.||++||||||||+++. ||+|+|+++|+|+++++... ++..+....++..... -+...
T Consensus 82 f~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~-d~~dlm~~~E~li~~i~~~~------~~~~i~~~eaf~~~~g-~~~~~ 152 (306)
T PRK09350 82 FQICKSFRNEEA-GRYHNPEFTMLEWYRPHY-DMYRLMNEVDDLLQQVLDCE------PAESLSYQQAFLRYLG-IDPLS 152 (306)
T ss_pred EEecceeecCCC-CCCCCcHHHhhhhhhhCC-CHHHHHHHHHHHHHHHHhcC------CceEEEHHHHHHHHhC-CCCCc
Confidence 999999999998 999999999999999997 79999999999999987530 0000000000000000 01223
Q ss_pred cCHHHHHHHHHHcCC--CCCCCCCCCcHHHHHHhHHHHHHhCC-ccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC
Q 008808 398 LTFEEGVQMLKDAGV--EIDPLGDLNTESERKLGQLVLEKYGT-EFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG 474 (553)
Q Consensus 398 i~~~ea~~ll~~~g~--~~~~~~dl~~~~e~~l~~~v~~~~~~-~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G 474 (553)
.+..++.+++.+.|+ ..+...++.+..+++++.+|+++++. .++||+|||.+++|| ++++++||++++|||||++|
T Consensus 153 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP~~~~~~-a~~~~~~~~~~~rfdl~i~G 231 (306)
T PRK09350 153 ADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAAL-AKISTEDHRVAERFEVYFKG 231 (306)
T ss_pred CCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcc-ccccCCCCCeeEEEEEEECC
Confidence 455556666677776 33444567788899999999999875 467789999999998 57899999999999999999
Q ss_pred EEEeeceeccCCHHHHHHHHHH-------cCCChhcH-HHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008808 475 EEIISGAQRIHIPEFLAERAQA-------CGIDVKTI-STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKT 541 (553)
Q Consensus 475 ~Ei~~G~~r~~d~~~l~~r~~~-------~g~~~~~~-~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv 541 (553)
+||+|||+|+|||++|++|+++ .|.++..+ ++||+|++||+|||||||||||||+|++||+.|||||
T Consensus 232 ~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 232 IELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred EEEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCCCCceEecHHHHHHHHcCCCCcccC
Confidence 9999999999999999999974 78877777 6799999999999999999999999999999999997
No 37
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=7.4e-66 Score=523.25 Aligned_cols=269 Identities=29% Similarity=0.508 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCC---CCceecccChhhHhhhcccCCCceeEEEecee
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK---GQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~---~~~~~L~~SPql~lk~li~~g~~rVfeIg~~F 324 (553)
+++||+|++.||+||.++||+||+||+|++++++ |+.+|.+.|+ +..+||+||||||||+|++||++|||+|||||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~-g~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPE-GARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCC-CCCCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 4789999999999999999999999999977775 4567988775 45566999999999999999999999999999
Q ss_pred cCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHH
Q 008808 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404 (553)
Q Consensus 325 R~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~ 404 (553)
|+|++++.|| +||||||||++|. ||+|+|+++|+|+.+++..+.+. .+..||+|+||.||+
T Consensus 80 R~e~~~~~r~-~Ef~~~e~e~~~~-~~~dlm~~~e~li~~i~~~~~~~-----------------~~~~p~~rity~eA~ 140 (280)
T cd00777 80 RDEDLRADRQ-PEFTQIDIEMSFV-DQEDIMSLIEGLLKYVFKEVLGV-----------------ELTTPFPRMTYAEAM 140 (280)
T ss_pred eCCCCCCCcc-ceeEEeEeeeccC-CHHHHHHHHHHHHHHHHHHHhCC-----------------CCCCCCceeeHHHHH
Confidence 9999977777 5999999999998 79999999999999998877532 123589999999999
Q ss_pred HHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEec-cCCcC---CCCCCcccCCCCcceeEEEEEeCCEEEeec
Q 008808 405 QMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHR-YPLAV---RPFYTMPCHDNSLYSNSFDVFIRGEEIISG 480 (553)
Q Consensus 405 ~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~-~P~~~---~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G 480 (553)
+. .|++..+..|+... +..++ .++ +.++++ ||... .|+ ++.++++ ++++|||||++|+||+||
T Consensus 141 ~~---~~~~~~~~~d~~~~-~~~~~---~~~----~~~~~~pf~~~~~~~~~~-~~~~~~~-~~~~~fdl~~~G~Ei~~G 207 (280)
T cd00777 141 ER---YGFKFLWIVDFPLF-EWDEE---EGR----LVSAHHPFTAPKEEDLDL-LEKDPED-ARAQAYDLVLNGVELGGG 207 (280)
T ss_pred HH---hCCCCccccCCccc-CChhH---HHH----HHHHhCCCcCCCcccchh-hhcCCcc-CeeEEEEEEeCCEEEccC
Confidence 75 35555454444311 00000 000 011122 22211 122 2334444 799999999999999999
Q ss_pred eeccCCHHHHHHHHHHcCCC----hhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 481 AQRIHIPEFLAERAQACGID----VKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 481 ~~r~~d~~~l~~r~~~~g~~----~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|+|+|||++|++||++.|++ ++.++|||+|++||+|||||||||||||+|++||++|||||++|||+.+
T Consensus 208 ~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 208 SIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred EEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 99999999999999999988 4568999999999999999999999999999999999999999999863
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-57 Score=438.98 Aligned_cols=274 Identities=21% Similarity=0.336 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeecc-CCCCCccceeecCC------CCceecccChhhHhhhcccCCCceeE
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-SSEGGSAVFRLDYK------GQSACLAQSPQLHKQMSICGDFGRVF 318 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~-~~egga~~F~v~~~------~~~~~L~~SPql~lk~li~~g~~rVf 318 (553)
..+..|++|++.||.||.++||+||+||.|+.+ .++.+-.+|.|.|+ +.++||++|||+++|+|+++|.+++|
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~if 93 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIF 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcch
Confidence 347889999999999999999999999999643 36667779999875 37899999999999999999999999
Q ss_pred EEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCccc
Q 008808 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRL 398 (553)
Q Consensus 319 eIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 398 (553)
|||+||||++. +.+|+|||||||||..+. ||+.+|+.+.+|+..++.... +.++
T Consensus 94 ql~kvfRN~E~-G~~H~PEFTMLEWYrv~~-d~~~lm~e~~~Ll~~vl~~~~------------------------~E~l 147 (322)
T COG2269 94 QLGKVFRNEEM-GRLHNPEFTMLEWYRVGC-DYYRLMNEVDDLLQLVLECVE------------------------AERL 147 (322)
T ss_pred hhhHHHhcccc-cccCCCceeEeeeeccCC-cHHHHHHHHHHHHHHHHccCC------------------------ccee
Confidence 99999999994 899999999999999986 799999999999998876542 2333
Q ss_pred CHHHH-----------------HHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCc-cEEEeccCCcCCCCCCcccCC
Q 008808 399 TFEEG-----------------VQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTE-FYILHRYPLAVRPFYTMPCHD 460 (553)
Q Consensus 399 ~~~ea-----------------~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~-~~ii~~~P~~~~pfy~~~~~~ 460 (553)
||.|| .+.++..|+.....+|+.+..++++...|++++|.. ..+|+|||.....+ +++++.
T Consensus 148 s~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaL-A~i~~~ 226 (322)
T COG2269 148 SYQEAFLRYLGIDPLSADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAAL-AQISTG 226 (322)
T ss_pred eHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHh-hccCCC
Confidence 33333 334556677766667788888999998899988753 57789999999998 789999
Q ss_pred CCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH-------cCCCh-hcHHHHHHHhhcCCCCcceeeecHHHHHHHH
Q 008808 461 NSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA-------CGIDV-KTISTYIDSFRYGAPPHGGFGVGLERVVMLF 532 (553)
Q Consensus 461 ~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~-------~g~~~-~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l 532 (553)
||++++|||||++|+||+||+.|++|+.+|+.||+. .|... ..+++||.|+.. ||||+|+++|+|||+|++
T Consensus 227 D~rVAERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLa 305 (322)
T COG2269 227 DPRVAERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLA 305 (322)
T ss_pred CcchhhhhhheeeeeeecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-CCCcccceecHHHHHHHH
Confidence 999999999999999999999999999999999962 23332 345899999999 999999999999999999
Q ss_pred cCCCCccccccccCC
Q 008808 533 CGLNNIRKTSLYPRD 547 (553)
Q Consensus 533 ~g~~nIrdv~~FPr~ 547 (553)
+|..+|.+|+.||.+
T Consensus 306 lg~~~i~~Vi~f~v~ 320 (322)
T COG2269 306 LGAESIDDVIAFPVA 320 (322)
T ss_pred cCcchHHHHhhcccc
Confidence 999999999999975
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.88 E-value=2.2e-22 Score=183.54 Aligned_cols=127 Identities=32% Similarity=0.456 Sum_probs=103.3
Q ss_pred EeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
.++++...+.|+.|+|+|||+++|.+| |++|++|||+++.+|||++.+.. .+ +++...|+.||+|.|+|++..++
T Consensus 4 ~~~~~~~~~~g~~V~i~Gwv~~~R~~g-k~~Fi~LrD~~g~~Q~v~~~~~~---~~-~~~~~~l~~gs~V~V~G~~~~~~ 78 (135)
T cd04317 4 YCGELRESHVGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVVFDPEEA---PE-FELAEKLRNESVIQVTGKVRARP 78 (135)
T ss_pred ehhhCChhHCCCEEEEEEeEehhcccC-CEEEEEEecCCeeEEEEEeCCch---hH-HHHHhCCCCccEEEEEEEEECCC
Confidence 355666677899999999999999999 79999999999999999986531 22 46778899999999999998754
Q ss_pred Cc-c--CCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHH
Q 008808 174 VE-I--KGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLA 243 (553)
Q Consensus 174 ~~-~--~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~ 243 (553)
.+ + +..++++||+++++++|++| .+ |+...+.. ..+.++|++|||||||+|.
T Consensus 79 ~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~-----------------~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 79 EGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDV-----------------NVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred ccccCCCCCCCcEEEEEeEEEEEECC-CCCCCcccccc-----------------CCCHHHhhhcceeecCCCC
Confidence 21 1 22346799999999999999 67 98776532 3578999999999999863
No 40
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.86 E-value=2.6e-21 Score=169.83 Aligned_cols=107 Identities=22% Similarity=0.374 Sum_probs=90.8
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
+|+|+|||+++|.+| |++|++|||+++.||||++.+.. .++.|.++.+.|+.||+|.|+|+++.++ ++++||
T Consensus 1 ~v~v~GwV~~~R~~g-~~~Fi~lrd~~~~lQ~v~~~~~~-~~~~~~~~~~~l~~g~~V~v~G~v~~~~------~g~~El 72 (108)
T cd04322 1 EVSVAGRIMSKRGSG-KLSFADLQDESGKIQVYVNKDDL-GEEEFEDFKKLLDLGDIIGVTGTPFKTK------TGELSI 72 (108)
T ss_pred CEEEEEEEEEEecCC-CeEEEEEEECCeEEEEEEECCCC-CHHHHHHHHhcCCCCCEEEEEEEEEecC------CCCEEE
Confidence 489999999999999 79999999999999999986632 3455666766699999999999998765 257999
Q ss_pred EEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceee
Q 008808 186 QIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDI 239 (553)
Q Consensus 186 ~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdL 239 (553)
+++++++||+|..+ |+...+ ..+.|+|+++|||||
T Consensus 73 ~~~~~~ils~~~~plP~~~~~-------------------~~~~~~r~~~R~ldl 108 (108)
T cd04322 73 FVKEFTLLSKSLRPLPEKFHG-------------------LTDVETRYRQRYLDL 108 (108)
T ss_pred EeCEeEEeeccCCCCCCCccC-------------------cCChhheeecccccC
Confidence 99999999999877 875543 257899999999997
No 41
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.80 E-value=6.9e-19 Score=152.79 Aligned_cols=100 Identities=51% Similarity=0.752 Sum_probs=85.5
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCC-ceeEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVE 184 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~-t~~~E 184 (553)
.|+|+|||+++|.+|+|++|++|||+++.|||+++.+....+++|++++..|+.||+|.|+|++..++++++++ ++++|
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~E 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEE
Confidence 48999999999999989999999999999999998764224677888999999999999999999876554443 36799
Q ss_pred EEEeEEEEeecCCCC-CCcccc
Q 008808 185 VQIKKLYCVSRAAKT-PITIED 205 (553)
Q Consensus 185 i~v~~i~~ls~~~~~-P~~~~d 205 (553)
|+++++++|++|..+ |+++.|
T Consensus 81 l~~~~i~il~~~~~~~P~~~~d 102 (102)
T cd04320 81 LHIEKIYVVSEAAEPLPFQLED 102 (102)
T ss_pred EEEEEEEEEecCCCCCCCCCCC
Confidence 999999999999877 987643
No 42
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.78 E-value=2.5e-18 Score=150.85 Aligned_cols=103 Identities=32% Similarity=0.490 Sum_probs=88.8
Q ss_pred eccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC
Q 008808 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (553)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~ 174 (553)
++++.....|+.|+|+|||+++|.+| |++|++|||+++.+|||++.+ ..++++++++..|+.||+|.|+|++..++.
T Consensus 3 ~~~l~~~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 79 (108)
T cd04316 3 SAEITPELDGEEVTVAGWVHEIRDLG-GIKFVILRDREGIVQVTAPKK--KVDKELFKTVRKLSRESVISVTGTVKAEPK 79 (108)
T ss_pred hhhCchhhCCCEEEEEEEEEeeeccC-CeEEEEEecCCeeEEEEEeCC--CCCHHHHHHHhCCCCcCEEEEEEEEEeCCC
Confidence 45676677899999999999999999 899999999999999999854 355678889999999999999999988763
Q ss_pred ccCCCceeEEEEEeEEEEeecCCCC-CCccc
Q 008808 175 EIKGATQQVEVQIKKLYCVSRAAKT-PITIE 204 (553)
Q Consensus 175 ~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~ 204 (553)
. .+.+||+++++.+|++|..+ |++..
T Consensus 80 ~----~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 80 A----PNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred C----CCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 2 24699999999999999877 87543
No 43
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.76 E-value=7.8e-18 Score=146.49 Aligned_cols=102 Identities=29% Similarity=0.360 Sum_probs=86.2
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
+|+|+|||+++|.+| |++|++|||+++.+||+++.+ .++++++....|+.||+|.|+|++...+.. .+.+||
T Consensus 1 ~V~v~Gwv~~~R~~g-k~~Fi~lrD~~g~iQ~v~~~~---~~~~~~~~~~~l~~~s~v~V~G~v~~~~~~----~~~~Ei 72 (103)
T cd04319 1 KVTLAGWVYRKREVG-KKAFIVLRDSTGIVQAVFSKD---LNEEAYREAKKVGIESSVIVEGAVKADPRA----PGGAEV 72 (103)
T ss_pred CEEEEEEEEeEEcCC-CeEEEEEecCCeeEEEEEeCC---CCHHHHHHHhCCCCCCEEEEEEEEEECCCC----CCCEEE
Confidence 389999999999999 899999999999999999864 345677777889999999999999876532 236999
Q ss_pred EEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccce
Q 008808 186 QIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVI 237 (553)
Q Consensus 186 ~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~L 237 (553)
.++++++|++|. + |++.+ .+.|+|+++|||
T Consensus 73 ~~~~i~vl~~a~-~~pi~~~---------------------~~~~~~~~~rhL 103 (103)
T cd04319 73 HGEKLEIIQNVE-FFPITED---------------------ASDEFLLDVRHL 103 (103)
T ss_pred EEEEEEEEecCC-CCccCCC---------------------CCHHHHhhccCC
Confidence 999999999996 5 87421 268999999997
No 44
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.70 E-value=1.4e-16 Score=168.28 Aligned_cols=118 Identities=22% Similarity=0.350 Sum_probs=90.1
Q ss_pred CCCccccccccceeeccHHhHHHHHH-----HHHHHHHHHHHhHhCCcEEEecceeeccC------CCCCccc-eeecCC
Q 008808 225 RVNQDTRLNNRVIDIRTLANQGIFRI-----QSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAV-FRLDYK 292 (553)
Q Consensus 225 ~~~~e~Rl~~R~LdLr~~~~~~if~~-----Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egga~~-F~v~~~ 292 (553)
..++|+||++| |.+..+++|.+ .+.|.+.||+||...||.||.||+|+... ..++... ..+-+.
T Consensus 179 ~~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 179 FKELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 35789999999 88999999999 99999999999999999999999996321 1111110 011113
Q ss_pred CCceecc--cChhhHhhhcc----cCCCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 293 GQSACLA--QSPQLHKQMSI----CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 293 ~~~~~L~--~SPql~lk~li----~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
+...+|| ..|.|+..+.. ....-|+||||+|||+|.. +.+|++||+|++++...
T Consensus 255 deel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiG 314 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMG 314 (417)
T ss_pred CCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeC
Confidence 5678999 68898875321 1223589999999999985 78999999999998763
No 45
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.65 E-value=1.3e-15 Score=127.84 Aligned_cols=85 Identities=31% Similarity=0.397 Sum_probs=73.5
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
.|+|+|||+++|.+| |++|++|||+++.+|++++.+. . .+|+++...|+.||+|.|+|++..++.+. ++++++||
T Consensus 1 ~V~i~Gwv~~~R~~g-~~~Fi~Lrd~~~~iQ~v~~~~~--~-~~~~~~~~~l~~~s~V~v~G~~~~~~~~~-~~~~~~El 75 (85)
T cd04100 1 EVTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVVNKEE--L-GEFFEEAEKLRTESVVGVTGTVVKRPEGN-LATGEIEL 75 (85)
T ss_pred CEEEEEEEehhccCC-CEEEEEEEeCCeeEEEEEECCc--C-hHHHHHHhCCCCCCEEEEEeEEEECCCCC-CCCCCEEE
Confidence 389999999999999 7999999999999999998763 1 23788889999999999999998876443 45678999
Q ss_pred EEeEEEEeec
Q 008808 186 QIKKLYCVSR 195 (553)
Q Consensus 186 ~v~~i~~ls~ 195 (553)
.++++++|++
T Consensus 76 ~~~~i~il~~ 85 (85)
T cd04100 76 QAEELEVLSK 85 (85)
T ss_pred EEeEEEEECC
Confidence 9999999975
No 46
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.61 E-value=6.4e-15 Score=123.33 Aligned_cols=84 Identities=31% Similarity=0.383 Sum_probs=70.5
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
.|+|+|||+++|.+| |++|++|||+++.+|++++.+. .+. +++.+.|+.||+|.|+|++..++.+. ...+.+||
T Consensus 1 ~V~v~Gwv~~~R~~g-~~~Fi~LrD~~~~iQ~v~~~~~--~~~--~~~~~~l~~es~V~V~G~v~~~~~~~-~~~~~~Ei 74 (84)
T cd04323 1 RVKVFGWVHRLRSQK-KLMFLVLRDGTGFLQCVLSKKL--VTE--FYDAKSLTQESSVEVTGEVKEDPRAK-QAPGGYEL 74 (84)
T ss_pred CEEEEEEEEEEecCC-CcEEEEEEcCCeEEEEEEcCCc--chh--HHHHhcCCCcCEEEEEEEEEECCccc-CCCCCEEE
Confidence 389999999999998 9999999999999999998653 122 56778999999999999999876543 22456999
Q ss_pred EEeEEEEeec
Q 008808 186 QIKKLYCVSR 195 (553)
Q Consensus 186 ~v~~i~~ls~ 195 (553)
+++++++||.
T Consensus 75 ~~~~i~vl~~ 84 (84)
T cd04323 75 QVDYLEIIGE 84 (84)
T ss_pred EEEEEEEEcC
Confidence 9999999974
No 47
>PTZ00213 asparagine synthetase A; Provisional
Probab=99.56 E-value=3.4e-13 Score=135.91 Aligned_cols=274 Identities=19% Similarity=0.186 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHhH-----hCCcEEEecceeeccCCCC-----Ccc---ceeecCC-CCceecccChhhHhhhccc-CC
Q 008808 249 RIQSQVGNIFRQFLL-----SENFVEIHTPKLIAGSSEG-----GSA---VFRLDYK-GQSACLAQSPQLHKQMSIC-GD 313 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~eg-----ga~---~F~v~~~-~~~~~L~~SPql~lk~li~-~g 313 (553)
+....-|..|++||. +.+.+.|..|++....++- |.+ .|.+..+ +..+-.-+|---||.+++. -|
T Consensus 9 ~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~ 88 (348)
T PTZ00213 9 IDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGEHK 88 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHhcC
Confidence 333444555666653 5799999999987533221 211 4555543 5667778888889888774 23
Q ss_pred C---ceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcccc
Q 008808 314 F---GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK 390 (553)
Q Consensus 314 ~---~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~ 390 (553)
| +.+|.=.+..|..+.-+..|.-=--|-|||+.+.. -+.-++.+.+.+..|+..+... -..+...||.-.-.
T Consensus 89 f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~iy~~ik~t----e~~~~~~yp~l~~~ 163 (348)
T PTZ00213 89 FPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAP-ADRNLEYLKNTVRRLYAAIRKT----EEAICNEYPNLKRI 163 (348)
T ss_pred CCCCceeeeccccccCCcccCccceeEeccccHHHhcCc-cccCHHHHHHHHHHHHHHHHHH----HHHHHHHchhhhhc
Confidence 3 57888777777544348899877778888887753 3555566666666666555421 11122234321111
Q ss_pred CCCCCcccCHHHHHHHHHHcCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEEecc------CCcCCCC-CCccc----
Q 008808 391 YKPKTLRLTFEEGVQMLKDAGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYILHRY------PLAVRPF-YTMPC---- 458 (553)
Q Consensus 391 ~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii~~~------P~~~~pf-y~~~~---- 458 (553)
+. ..|+|--+-+|++.. -+++ .+-|..+. .+++.=|.+=..+ |...|.. |.-..
T Consensus 164 Lp---~~I~FitsqeL~~~Y-------P~lt~keRE~~i~----ke~gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~ 229 (348)
T PTZ00213 164 LP---KEITFLHTEHLLKMY-------PNLSPKEREREIV----KKYGAVFLIGIGCKLSSGDTHDLRAPDYDDWSSPVS 229 (348)
T ss_pred CC---CceEEecHHHHHHHC-------CCCCHHHHHHHHH----HHhCcEEEEeccCcCCCCCcCCCCCCCccccccccc
Confidence 11 123333232222221 1122 12333332 2334322111112 2222211 10000
Q ss_pred --------------CCCCcceeEEEEEe------CCEEEeeceeccCCHHHHHHHHHHcC-CChhcHHHHHHHhhcC-CC
Q 008808 459 --------------HDNSLYSNSFDVFI------RGEEIISGAQRIHIPEFLAERAQACG-IDVKTISTYIDSFRYG-AP 516 (553)
Q Consensus 459 --------------~~~~~~~~~fdl~~------~G~Ei~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~a~~~G-~p 516 (553)
+-.......=|+++ +..||.+|+.|. |++.+.+|++..| .+...+.+|++ +..| +|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~gLNGDilvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP 307 (348)
T PTZ00213 230 ASKIGFPTADPTMNSLMSLQGLNGDILVYNPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELP 307 (348)
T ss_pred ccccccccccccccccccccCccceEEEechhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCC
Confidence 00000112335443 248999999999 9999999999999 57778889999 7778 99
Q ss_pred CcceeeecHHHHHHHHcCCCCcccccc
Q 008808 517 PHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 517 P~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
+|+|+|||+|||+|+|||+.+|.+|+.
T Consensus 308 ~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 308 QTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred CcccccccHHHHHHHHhCcchhcceee
Confidence 999999999999999999999999864
No 48
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=99.56 E-value=1.7e-13 Score=136.61 Aligned_cols=258 Identities=19% Similarity=0.225 Sum_probs=157.3
Q ss_pred HhCCcEEEecceeeccCCC-----CCc-c--ceeecCC-CCceecccChhhHhhhccc-CCC---ceeEEEeceecC-CC
Q 008808 263 LSENFVEIHTPKLIAGSSE-----GGS-A--VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF---GRVFETGPVFRA-ED 328 (553)
Q Consensus 263 ~~~gF~EV~TP~l~~~~~e-----gga-~--~F~v~~~-~~~~~L~~SPql~lk~li~-~g~---~rVfeIg~~FR~-E~ 328 (553)
.+.+.+.|..|+++...++ .|. + .|.+..+ +..+-.-+|---||.+++. -|| +.+|.=....|. |+
T Consensus 17 ~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ 96 (309)
T cd00645 17 KELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDED 96 (309)
T ss_pred HHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCcc
Confidence 3579999999998754332 122 2 4666544 5667777888889888874 234 568888887776 55
Q ss_pred CCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHH
Q 008808 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (553)
Q Consensus 329 ~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~ 408 (553)
-+..|.-=--|-|||..+.. -+.-++.+.+.+..|+..+... -..+...||.-.-.+. ..|+|--..++++
T Consensus 97 -ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~iy~~ik~t----e~~~~~~y~~~~~~Lp---~~i~FitsqeL~~ 167 (309)
T cd00645 97 -LDNIHSIYVDQWDWEKVISK-GERNLETLKETVNKIYKAIKET----ELEVNEKYPQLEPILP---EEITFITSQELED 167 (309)
T ss_pred -cCccceeEeccccHHhhcCc-cccCHHHHHHHHHHHHHHHHHH----HHHHHHHchhhhhcCC---CceEEecHHHHHH
Confidence 48899877778888877653 3455555566666666555421 1122233442111111 2233333333222
Q ss_pred HcCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEEeccCCcC-CCCCCcccCCCCcceeEEEEEe------CCEEEeec
Q 008808 409 DAGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYILHRYPLAV-RPFYTMPCHDNSLYSNSFDVFI------RGEEIISG 480 (553)
Q Consensus 409 ~~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii~~~P~~~-~pfy~~~~~~~~~~~~~fdl~~------~G~Ei~~G 480 (553)
.. -+++ .+-|..+. .+++.=|.+=..++... .|- ....|+...++..=|+++ +..||.||
T Consensus 168 ~Y-------P~l~~keRE~~i~----ke~gaVFi~~IG~~L~~g~~H-d~RapDYDDW~LNGDil~w~~~l~~a~ELSSm 235 (309)
T cd00645 168 RY-------PDLTPKEREDAIC----KEHGAVFIIGIGGKLSDGKKH-DGRAPDYDDWTLNGDILVWNPVLQRAFELSSM 235 (309)
T ss_pred HC-------CCCCHHHHHHHHH----HHhCcEEEEeccCcCCCCCcC-CCCCCCCcCccccceEEEEchhcCceeeecCc
Confidence 22 1232 23344443 34554332222333211 000 111122222445556554 24899999
Q ss_pred eeccCCHHHHHHHHHHcC-CChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcCCCCcccccc
Q 008808 481 AQRIHIPEFLAERAQACG-IDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 481 ~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
+.|.+. +.+.++++..| .+...+.+ ++++..| +|||+|+|||+|||+|+|||+.+|.+|.+
T Consensus 236 GiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVqa 298 (309)
T cd00645 236 GIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHIGEVQA 298 (309)
T ss_pred ceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccchhcceee
Confidence 999999 99999999998 45555555 9999999 99999999999999999999999999965
No 49
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.56 E-value=6e-14 Score=148.04 Aligned_cols=94 Identities=28% Similarity=0.477 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccC------CCCCc----cceeecCCCCceecc--cChhhHhhhcc----cCC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGS----AVFRLDYKGQSACLA--QSPQLHKQMSI----CGD 313 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egga----~~F~v~~~~~~~~L~--~SPql~lk~li----~~g 313 (553)
-.+.+.+.+|++|...||.||.||+|.... .+.+. ..|. ++...+|| +.|+|+..... ...
T Consensus 241 ~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk---~ee~lvLRPdLTPsLaR~La~N~~~l~~ 317 (453)
T TIGR02367 241 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR---VDKNFCLRPMLAPNLYNYLRKLDRALPD 317 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE---ecCceEecccCHHHHHHHHHHhhhhccC
Confidence 357788999999999999999999995210 11111 2333 34568999 88998854321 122
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
.-|+||||+|||+|.. +.+|+.||+|++++...
T Consensus 318 PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG 350 (453)
T TIGR02367 318 PIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMG 350 (453)
T ss_pred CeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEEC
Confidence 4599999999999985 78999999999998764
No 50
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.55 E-value=5.8e-14 Score=118.10 Aligned_cols=85 Identities=19% Similarity=0.346 Sum_probs=68.5
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~E 184 (553)
+|+|+|||+++|..+++++|++|||+++ .+||+++.+. +.++....|+.||+|.|+|++...+......++++|
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~~-----~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~E 75 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAKK-----DAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWE 75 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCCH-----HHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEE
Confidence 3899999999999433899999999999 7999987642 234455789999999999999876643223457899
Q ss_pred EEEeEEEEeec
Q 008808 185 VQIKKLYCVSR 195 (553)
Q Consensus 185 i~v~~i~~ls~ 195 (553)
|.++++.+|++
T Consensus 76 i~~~~i~il~~ 86 (86)
T cd04321 76 LVVDDIQTLNA 86 (86)
T ss_pred EEEEEEEEecC
Confidence 99999999974
No 51
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.54 E-value=1.5e-14 Score=140.13 Aligned_cols=98 Identities=24% Similarity=0.288 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCC-CC-C-c--ccee-ecCCCCceecccChhhHhhhcccC----CCceeEE
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-G-S--AVFR-LDYKGQSACLAQSPQLHKQMSICG----DFGRVFE 319 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-eg-g-a--~~F~-v~~~~~~~~L~~SPql~lk~li~~----g~~rVfe 319 (553)
+|+.+.+.+|++|...||.||.||.|..... .. | . .... .+..+...+||.|+...+..++.. ..-|+||
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 3678899999999999999999999965311 10 1 0 1122 234567889999999999877654 4579999
Q ss_pred EeceecCCCCCCC--CCcCcccceeEEeccc
Q 008808 320 TGPVFRAEDSYTH--RHLCEFTGLDVEMEIK 348 (553)
Q Consensus 320 Ig~~FR~E~~~t~--rHl~EFt~lE~e~a~~ 348 (553)
||+|||+|.. +. +|+.||+|+++++...
T Consensus 81 ig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~ 110 (211)
T cd00768 81 IGPAFRNEGG-RRGLRRVREFTQLEGEVFGE 110 (211)
T ss_pred EcceeecCCC-ccccccceeEEEcCEEEEcC
Confidence 9999999975 43 7889999999998764
No 52
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.53 E-value=1e-13 Score=115.49 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=67.4
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCe--EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
.|+|+|||+++|.+| +++|++|||+++ .|||+++.+.. . +++...|+.||+|.|+|.+..++.+ .+++
T Consensus 1 ~v~v~Gwv~~~R~~g-~~~Fi~LrD~s~~~~lQvv~~~~~~--~---~~~~~~l~~gs~V~v~G~v~~~~~~----~~~~ 70 (82)
T cd04318 1 EVTVNGWVRSVRDSK-KISFIELNDGSCLKNLQVVVDKELT--N---FKEILKLSTGSSIRVEGVLVKSPGA----KQPF 70 (82)
T ss_pred CEEEEEeEEEEEcCC-cEEEEEEECCCCccCEEEEEeCccc--C---HHHHhcCCCceEEEEEEEEEeCCCC----CCCE
Confidence 389999999999999 899999999988 59999987632 1 4667889999999999999887632 4679
Q ss_pred EEEEeEEEEee
Q 008808 184 EVQIKKLYCVS 194 (553)
Q Consensus 184 Ei~v~~i~~ls 194 (553)
||+++++.+++
T Consensus 71 El~~~~i~il~ 81 (82)
T cd04318 71 ELQAEKIEVLG 81 (82)
T ss_pred EEEEEEEEEec
Confidence 99999999986
No 53
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=99.52 E-value=9.3e-13 Score=132.54 Aligned_cols=253 Identities=21% Similarity=0.268 Sum_probs=158.7
Q ss_pred HhCCcEEEecceeeccCCCC-----Cc-c--ceeecCC-CCceecccChhhHhhhccc-CCC---ceeEEEeceecCCCC
Q 008808 263 LSENFVEIHTPKLIAGSSEG-----GS-A--VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF---GRVFETGPVFRAEDS 329 (553)
Q Consensus 263 ~~~gF~EV~TP~l~~~~~eg-----ga-~--~F~v~~~-~~~~~L~~SPql~lk~li~-~g~---~rVfeIg~~FR~E~~ 329 (553)
.+.+.+.|..|++....++- |. + .|.+..+ +..+-.-+|---||.+++. -|| +.+|.=....|..+.
T Consensus 28 ~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ 107 (327)
T PRK05425 28 KKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDED 107 (327)
T ss_pred HhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCcc
Confidence 35799999999987533221 21 1 4556544 3567778898899998875 244 468888887776433
Q ss_pred CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHH
Q 008808 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409 (553)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~ 409 (553)
-+..|.-=--|-|||..+.. -+.-++.+.+.+..|+..+... -..+...||.. .+.+ ..|+|--.-+|++.
T Consensus 108 ld~~HS~yVDQWDWEkvI~~-~~Rn~~~Lk~tV~~Iy~~ik~t----e~~~~~~y~~~--~~Lp--~~i~FitsqeL~~~ 178 (327)
T PRK05425 108 LDNTHSVYVDQWDWEKVIGK-EERNLDYLKETVEKIYKAIKAT----EKAVSKKYPLL--PFLP--EEITFITSQELEDR 178 (327)
T ss_pred cCcccceEeccccHHHhCCc-cccCHHHHHHHHHHHHHHHHHH----HHHHHHhCccc--ccCC--CceEEecHHHHHHH
Confidence 48899877778888877653 3445555566666666555421 11223345432 2222 12333333232222
Q ss_pred cCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEEeccCC------cCCCCCCcccCCCCcceeEEEEEe-----C-CEE
Q 008808 410 AGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYILHRYPL------AVRPFYTMPCHDNSLYSNSFDVFI-----R-GEE 476 (553)
Q Consensus 410 ~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii~~~P~------~~~pfy~~~~~~~~~~~~~fdl~~-----~-G~E 476 (553)
. -+++ .+-|..+. .+++.=|.+=..++. ..|. |+-+ .+...=|+++ + ..|
T Consensus 179 Y-------P~l~~keRE~~i~----ke~gaVFi~~IG~~L~~g~~Hd~Ra----pDYD--DW~LNGDilvw~~~l~~a~E 241 (327)
T PRK05425 179 Y-------PDLTPKEREDAIA----KEYGAVFLIGIGGKLSDGKPHDGRA----PDYD--DWGLNGDILVWNPVLDDAFE 241 (327)
T ss_pred C-------CCCCHHHHHHHHH----HHhCcEEEEeccCcCCCCCcCCCCC----CCCc--CcccCceEEEEccccCceee
Confidence 2 1232 23344443 345542222223332 2221 2222 2444455554 2 489
Q ss_pred EeeceeccCCHHHHHHHHHHcC-CChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcCCCCcccccc
Q 008808 477 IISGAQRIHIPEFLAERAQACG-IDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 477 i~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
|.||+.|.+ ++.+.++++..| .+...+.+|+++ ..| +|||+|+|||+|||+|+|||+.+|.+|.+
T Consensus 242 LSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 242 LSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred ecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCCCCCcccccccHHHHHHHHhccchhccccc
Confidence 999999999 999999999999 577788899999 778 99999999999999999999999999964
No 54
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.45 E-value=1.6e-12 Score=130.17 Aligned_cols=188 Identities=26% Similarity=0.411 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeecc---------CCCCCcc----ceeec--CC--CCceecc--cChhhHhhh-ccc
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAG---------SSEGGSA----VFRLD--YK--GQSACLA--QSPQLHKQM-SIC 311 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~---------~~egga~----~F~v~--~~--~~~~~L~--~SPql~lk~-li~ 311 (553)
+.+++.||++|...||.||.+|.+.+. +.+.-|+ .|.+. +- .....|| +||-+..-+ .-.
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~~ 99 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKHR 99 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHhc
Confidence 345778899999999999999998532 1222232 34441 11 4566677 455554333 113
Q ss_pred CCCceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcccc
Q 008808 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK 390 (553)
Q Consensus 312 ~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~ 390 (553)
..--|+|+||+|||+|.. +.+|+|+|+|+|.-+... -++.++..+++.+++++|
T Consensus 100 ~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf------------------------ 154 (247)
T PF01409_consen 100 PPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF------------------------ 154 (247)
T ss_dssp HSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH------------------------
T ss_pred CCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHh------------------------
Confidence 345799999999999996 889999999999865432 134555544444444333
Q ss_pred CCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCc--cEEEeccCCcCCCCCCcccCCCCcceeEE
Q 008808 391 YKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTE--FYILHRYPLAVRPFYTMPCHDNSLYSNSF 468 (553)
Q Consensus 391 ~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~--~~ii~~~P~~~~pfy~~~~~~~~~~~~~f 468 (553)
+.+ +-+- | +-.|| +- | +-..
T Consensus 155 ----------------------------------------------G~~~~~r~~---p-s~fPf-te-----P--s~e~ 176 (247)
T PF01409_consen 155 ----------------------------------------------GIDVKVRFR---P-SYFPF-TE-----P--SREA 176 (247)
T ss_dssp ----------------------------------------------TTTEEEEEE---E-CEETT-EE-----E--EEEE
T ss_pred ----------------------------------------------hcccceEee---c-CCCCc-cc-----C--CeEE
Confidence 111 1111 1 11255 32 2 2346
Q ss_pred EEEe------CCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008808 469 DVFI------RGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKT 541 (553)
Q Consensus 469 dl~~------~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv 541 (553)
|+++ ++.||++++. -.|+.++ ..|+| + --|...||||||||+|+..|.++||+.
T Consensus 177 ~i~~~~~~~~~wiEvgg~G~--vhP~Vl~----~~gid-~------------~~~~~A~G~GleRlam~~~gi~diR~~ 236 (247)
T PF01409_consen 177 DIYCGVCKGGGWIEVGGCGM--VHPEVLE----NWGID-E------------EYPGFAFGLGLERLAMLKYGIPDIRLL 236 (247)
T ss_dssp EEEEECTTTTCEEEEEEEEE--E-HHHHH----HTT---T------------TSEEEEEEEEHHHHHHHHHT-SSGGHH
T ss_pred EEEEeeccCCCceEEeeccc--ccHhhhh----ccCcC-c------------cceEEEecCCHHHHHHHHcCCchHHHH
Confidence 7777 3479988766 6676663 33443 1 245678999999999999999999973
No 55
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.44 E-value=1.6e-12 Score=134.29 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeecc---------CCCCCcc----ceeecCCCCceecc--cChhhHhhhcccCCCce
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAG---------SSEGGSA----VFRLDYKGQSACLA--QSPQLHKQMSICGDFGR 316 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~---------~~egga~----~F~v~~~~~~~~L~--~SPql~lk~li~~g~~r 316 (553)
+.++..||++|...||.|+.+|.|.+. +.+..|+ .|.+ +....|| +||-+..-|.-...--|
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI---~~~~lLRThTSp~qir~L~~~~~Pir 187 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI---DDGLLLRTHTSPVQIRTMEKQKPPIR 187 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE---cCCceeeccCcHHHHHHHHhcCCCeE
Confidence 456788899999999999999998631 1222232 3444 3444555 67766544332222349
Q ss_pred eEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHHHHH
Q 008808 317 VFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIF 366 (553)
Q Consensus 317 VfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~~i~ 366 (553)
+|++|+|||++.. +.+|.|+|+|+|.-+... -++.++...++.+++.++
T Consensus 188 if~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 188 IIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred EEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999985 889999999999744321 245666666665555544
No 56
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=99.39 E-value=4.6e-11 Score=120.09 Aligned_cols=270 Identities=19% Similarity=0.216 Sum_probs=160.1
Q ss_pred HHHHHHHHHHhH-----hCCcEEEecceeeccCCCC-----Cc-c--ceeecCC-CCceecccChhhHhhhccc-CCC--
Q 008808 252 SQVGNIFRQFLL-----SENFVEIHTPKLIAGSSEG-----GS-A--VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF-- 314 (553)
Q Consensus 252 s~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~eg-----ga-~--~F~v~~~-~~~~~L~~SPql~lk~li~-~g~-- 314 (553)
..-|..|++||. +.+.++|..|.++...++- |. + .|.+... +..+-.-+|---||.+++. -||
T Consensus 9 q~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~f~~ 88 (330)
T TIGR00669 9 QQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLARHDFSA 88 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHhcCCCC
Confidence 334555555553 5799999999987533221 21 2 4555543 5777788898899988874 244
Q ss_pred -ceeEEEeceecC-CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCC
Q 008808 315 -GRVFETGPVFRA-EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK 392 (553)
Q Consensus 315 -~rVfeIg~~FR~-E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~ 392 (553)
+.+|.=....|. |..-+..|.-=--|-|||+.+.. -+.-++.+.+.+..|+..+... -..+...|+..+ +.
T Consensus 89 geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~Iy~~ik~t----e~~~~~~y~l~~--~L 161 (330)
T TIGR00669 89 GEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPD-GERNFAYLKSTVEAIYAAIRAT----EAAVSERFGLAP--FL 161 (330)
T ss_pred CceeeeccccccCCccccCccceeeeccccHHHhcCc-ccccHHHHHHHHHHHHHHHHHH----HHHHHHhcCccc--cC
Confidence 578887777776 55247889777778888877653 3455555555666665555421 111222232111 11
Q ss_pred CCCcccCHHHHHHHHHHcCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEEeccC------CcCCCC-CCccc--CCCC
Q 008808 393 PKTLRLTFEEGVQMLKDAGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYILHRYP------LAVRPF-YTMPC--HDNS 462 (553)
Q Consensus 393 ~~~~~i~~~ea~~ll~~~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii~~~P------~~~~pf-y~~~~--~~~~ 462 (553)
+ ..|+|--.-+|++.. -+++ .+-|..+. .+++.=|.+=..++ ...|.. |.-.. .++.
T Consensus 162 p--~~I~FitsqeL~~~Y-------P~lt~keRE~~i~----ke~gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~ 228 (330)
T TIGR00669 162 P--DQIHFVHSEELVSRY-------PDLDSKGRERAIC----KELGAVFLIGIGGKLSDGKPHDVRAPDYDDWTTPSELG 228 (330)
T ss_pred C--CceEEecHHHHHHHC-------CCCCHHHHHHHHH----HHhCcEEEEeccCcCCCCCcCCCCCCCccccccccccc
Confidence 1 233433333333322 1232 23344443 34554322222233 233221 11000 0011
Q ss_pred cceeEEEEEe------CCEEEeeceeccCCHHHHHHHHHHcC-CChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcC
Q 008808 463 LYSNSFDVFI------RGEEIISGAQRIHIPEFLAERAQACG-IDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 463 ~~~~~fdl~~------~G~Ei~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g 534 (553)
.....=|+++ +..||.|-+.|. |++.+.+|++..| .+...+.+|+++ ..| +|+|+|+|||+|||+|+|||
T Consensus 229 ~~gLNGDilvw~~vl~~a~ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~ 306 (330)
T TIGR00669 229 YKGLNGDILVWNPVLGDAFELSSMGIRV-DEDALRHQLALTGDEDRLELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQ 306 (330)
T ss_pred ccCcCceEEEEchhcCceeeeecceeEE-CHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCccccccccHHHHHHHHhc
Confidence 1113345543 248999999996 6777888999888 677888999999 677 99999999999999999999
Q ss_pred CCCcccccc
Q 008808 535 LNNIRKTSL 543 (553)
Q Consensus 535 ~~nIrdv~~ 543 (553)
+.+|.+|..
T Consensus 307 k~HIgEVQ~ 315 (330)
T TIGR00669 307 LKHIGEVQA 315 (330)
T ss_pred cccccceee
Confidence 999999864
No 57
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3.4e-11 Score=123.81 Aligned_cols=111 Identities=15% Similarity=0.284 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeecc---------CCCCCcc----ceeecCCCCceecc--cChhhHhhhcccCC-Cc
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAG---------SSEGGSA----VFRLDYKGQSACLA--QSPQLHKQMSICGD-FG 315 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~---------~~egga~----~F~v~~~~~~~~L~--~SPql~lk~li~~g-~~ 315 (553)
..++..|+++|.+.||.|++.|-+.+. +-+..|+ .|.++.-....-|| +||=-...|.=-.. --
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P~ 193 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIPI 193 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCCc
Confidence 346788999999999999999965421 1111222 34333211113444 55533333221122 67
Q ss_pred eeEEEeceecCCCCCCCCCcCcccceeE-EeccccCHHHHHHHHHHHHH
Q 008808 316 RVFETGPVFRAEDSYTHRHLCEFTGLDV-EMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~rHl~EFt~lE~-e~a~~~~~~~~m~~~e~ll~ 363 (553)
|+|.+|+|||++.. |.+|+|+|.|+|- .+.-.-++.+++-+++++++
T Consensus 194 k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~ 241 (335)
T COG0016 194 KIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAK 241 (335)
T ss_pred eEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHH
Confidence 99999999999986 8999999999995 32222223444444444433
No 58
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.30 E-value=4.3e-11 Score=128.57 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=27.6
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEe
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEM 345 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~ 345 (553)
--|+|.||+|||+|.. |.+|+|||.|+|--.
T Consensus 342 p~k~fsigrVfR~d~i-DatH~~eFhQ~EG~v 372 (492)
T PLN02853 342 PKRYFSIDRVFRNEAV-DRTHLAEFHQVEGLV 372 (492)
T ss_pred CcEEEeccceecCCCC-CcccCccceeEEEEE
Confidence 4599999999999996 899999999999643
No 59
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.27 E-value=1.1e-10 Score=125.94 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=29.7
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
--|+|.||+|||+|.. +.+|+|||+|+|..+.-
T Consensus 357 P~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~ 389 (494)
T PTZ00326 357 PKKYFSIDRVFRNETL-DATHLAEFHQVEGFVID 389 (494)
T ss_pred CceEEecCCEecCCCC-CCCcCceeEEEEEEEEe
Confidence 4699999999999997 89999999999998653
No 60
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.14 E-value=1e-09 Score=112.89 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccC-------CCC--Cc----cceeecCCCCceecccChhhHhhhcccCCC---
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG--GS----AVFRLDYKGQSACLAQSPQLHKQMSICGDF--- 314 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-------~eg--ga----~~F~v~~~~~~~~L~~SPql~lk~li~~g~--- 314 (553)
...+.+.+|++|...||.|+.||.+.+.. .+. .| +.|.+. ....||+|----+=..+....
T Consensus 74 ~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~~l~~N~~~p 150 (294)
T TIGR00468 74 LTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLRTMEENEKPP 150 (294)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHHHHHhcCCCC
Confidence 35567788999999999999999997531 010 00 123332 344566443222222333333
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
-|+||||+|||++.. +.+|+|||++|+.-+... -++.++..+++.++
T Consensus 151 irlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll 198 (294)
T TIGR00468 151 IRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFL 198 (294)
T ss_pred ceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHH
Confidence 599999999999875 678999999999875421 14555555554444
No 61
>PLN02788 phenylalanine-tRNA synthetase
Probab=99.04 E-value=5.4e-09 Score=110.69 Aligned_cols=91 Identities=14% Similarity=0.223 Sum_probs=58.4
Q ss_pred HHHHHHHHhHhC---CcEEEe--cceeecc--------CCCCCccce-eecCCCCceecc--cChhhHhhhcccCCCcee
Q 008808 254 VGNIFRQFLLSE---NFVEIH--TPKLIAG--------SSEGGSAVF-RLDYKGQSACLA--QSPQLHKQMSICGDFGRV 317 (553)
Q Consensus 254 i~~~iR~fl~~~---gF~EV~--TP~l~~~--------~~egga~~F-~v~~~~~~~~L~--~SPql~lk~li~~g~~rV 317 (553)
+++.|+++|... ||.+++ .|+.... +.+..|+.- -+-|.+...-|| +|+-..- +|..+-.|+
T Consensus 73 ~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~--~l~~~~~~~ 150 (402)
T PLN02788 73 LKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAE--LLRAGHTHF 150 (402)
T ss_pred HHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHH--HHHhCCCcE
Confidence 456678888886 999998 4543211 112223211 122445555665 4543222 223456799
Q ss_pred EEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 318 feIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
+.+|+|||++.+ |.+|.|+|.|+|--+.+
T Consensus 151 ~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 151 LVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred EEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 999999999997 89999999999987654
No 62
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.03 E-value=7.1e-09 Score=114.07 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeecc---------CCCCCc----cceeecC-----------------------
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAG---------SSEGGS----AVFRLDY----------------------- 291 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~---------~~egga----~~F~v~~----------------------- 291 (553)
......+++.||+.|...||.||+||.+.+. +....| +.|.++.
T Consensus 232 ~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~~ 311 (489)
T PRK04172 232 KHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGGD 311 (489)
T ss_pred CChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccCC
Confidence 3457788999999999999999999998642 001111 1222211
Q ss_pred -------------CCCceecccChhhHhhhccc---CCCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 292 -------------KGQSACLAQSPQLHKQMSIC---GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 292 -------------~~~~~~L~~SPql~lk~li~---~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
.+....||..-=-..-++++ ..--|+||||+|||+|.. +..|++||+||+..+..
T Consensus 312 ~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G 382 (489)
T PRK04172 312 TGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGIVMG 382 (489)
T ss_pred CCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEEEEe
Confidence 01234555221111111122 123599999999999986 67889999999998764
No 63
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.95 E-value=3.9e-08 Score=99.61 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCC-------CCCccceee-cCCCCceeccc--ChhhHhh---hccc-CCC
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------EGGSAVFRL-DYKGQSACLAQ--SPQLHKQ---MSIC-GDF 314 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-------egga~~F~v-~~~~~~~~L~~--SPql~lk---~li~-~g~ 314 (553)
+++..|.+.+++.|.+.||.||.||.|..... ......|.+ +-.|..+.||- .|++..- .... ...
T Consensus 3 ~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p 82 (261)
T cd00773 3 ALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLP 82 (261)
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCC
Confidence 57889999999999999999999999965321 112235665 34577888883 3333321 1111 234
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
-|+|++|+|||+|.. ...|.-||+|+++|+-..
T Consensus 83 ~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~ 115 (261)
T cd00773 83 LKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGS 115 (261)
T ss_pred eEEEEEcCEEecCCC-CCCCccceEEeceeeeCC
Confidence 599999999999986 466889999999998544
No 64
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.91 E-value=1.7e-08 Score=81.68 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=63.0
Q ss_pred EEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEE
Q 008808 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (553)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~ 186 (553)
|+|.|||++++..|++++|+.|+|+++.|||++.. +.+..+...|..|++|.|+|.+..... ++++|.
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~------~~~~~~~~~l~~g~~v~v~G~v~~~~~------~~~~l~ 68 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFN------EEYERFREKLKEGDIVRVRGKVKRYNG------GELELI 68 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET------HHHHHHHHTS-TTSEEEEEEEEEEETT------SSEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEcc------HHhhHHhhcCCCCeEEEEEEEEEEECC------ccEEEE
Confidence 78999999995555599999999999999999987 245677889999999999999987641 259999
Q ss_pred EeEEEEe
Q 008808 187 IKKLYCV 193 (553)
Q Consensus 187 v~~i~~l 193 (553)
+.++++|
T Consensus 69 ~~~i~~l 75 (75)
T PF01336_consen 69 VPKIEIL 75 (75)
T ss_dssp EEEEEEE
T ss_pred ECEEEEC
Confidence 9999876
No 65
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.72 E-value=7.9e-08 Score=102.07 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=36.1
Q ss_pred CCceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHH
Q 008808 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFV 363 (553)
Q Consensus 313 g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~ 363 (553)
.--|+|+||+|||+|...+.+|+++|.|+|.-++-. -++.|++.+++.|++
T Consensus 206 ~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr 257 (533)
T TIGR00470 206 LPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLA 257 (533)
T ss_pred CCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHH
Confidence 356999999999999644779999999999754422 234555555555444
No 66
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.69 E-value=1.5e-06 Score=93.38 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C--CCC----ccceee-cCCCCceecc--cChhhHhhhcc--
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S--EGG----SAVFRL-DYKGQSACLA--QSPQLHKQMSI-- 310 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~--egg----a~~F~v-~~~~~~~~L~--~SPql~lk~li-- 310 (553)
.-.+++..+.+.+++.|.+.||.||.||++.... . +.. ...|.+ +..|+.+.|| ..|++....+-
T Consensus 12 ~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~ 91 (397)
T TIGR00442 12 EEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAPVARAVIENK 91 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHHHHHHHHhcc
Confidence 3457888999999999999999999999995321 1 110 234554 3467777887 33444322110
Q ss_pred -c-CCCceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 311 -C-GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 311 -~-~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
. ..--|+|++|+|||+|.. ...|.-||+|+++|.-..
T Consensus 92 ~~~~~p~r~~y~g~vfR~e~~-~~gr~ref~Q~g~eiig~ 130 (397)
T TIGR00442 92 LLLPKPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIGS 130 (397)
T ss_pred cccCCCeEEEEEcCeecCCCC-CCCcccceEEcCeeeeCC
Confidence 0 113599999999999986 344669999999997544
No 67
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.61 E-value=2.1e-06 Score=89.38 Aligned_cols=116 Identities=21% Similarity=0.180 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC------CCCccceee-cCCCCceecc--cChhhHhhhccc-----C
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLA--QSPQLHKQMSIC-----G 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~--~SPql~lk~li~-----~ 312 (553)
-.+++..|.+.+++.|.+.||.||+||++..... +.....|.+ +.-|..+.|| ..|++..- +.. .
T Consensus 7 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~-~~~~~~~~~ 85 (314)
T TIGR00443 7 EAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARA-VSTRLRDRP 85 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHH-HHHhcccCC
Confidence 3567889999999999999999999999854211 112235654 3357778887 34554332 211 1
Q ss_pred CCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCH---HHHHHHHHHHHHH
Q 008808 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (553)
Q Consensus 313 g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~---~~~m~~~e~ll~~ 364 (553)
..-|+|++|+|||.|.. ..-+.-||+|+.+|.-..++. -|++.++-+.+..
T Consensus 86 ~p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~ 139 (314)
T TIGR00443 86 LPLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKA 139 (314)
T ss_pred CCeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHH
Confidence 24699999999999986 455678999999996433222 2555555554443
No 68
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=98.59 E-value=1.3e-06 Score=93.63 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=36.4
Q ss_pred CCCCceecc--cChhhHhhhcccCCCc-------eeEEEeceecCCCCCCCCCcCcccceeEEec
Q 008808 291 YKGQSACLA--QSPQLHKQMSICGDFG-------RVFETGPVFRAEDSYTHRHLCEFTGLDVEME 346 (553)
Q Consensus 291 ~~~~~~~L~--~SPql~lk~li~~g~~-------rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a 346 (553)
|.+...-|| +|+-.- .+|-.+.+ ++...|.|||.+.+ |.+|.|-|.|+|--+.
T Consensus 103 Yi~~~~lLRTHTSa~q~--~~~~~~~~~~~~~~~~~i~~G~VYRrD~i-DatH~p~FHQ~EG~~v 164 (460)
T TIGR00469 103 YINEQHLLRAHTSAHEL--ECFQGGLDDSDNIKSGFLISADVYRRDEI-DKTHYPVFHQADGAAI 164 (460)
T ss_pred EecCCceeCCCCcHHHH--HHHHhccccCCCcceeeEeecceeeCCCC-ccccCccceeeEEEEE
Confidence 455666676 555322 22333332 48899999999997 8999999999995443
No 69
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.50 E-value=4.7e-07 Score=89.38 Aligned_cols=107 Identities=16% Similarity=0.253 Sum_probs=74.3
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCCCCCc-------------cceeecCCCCceecccC--hhhHhhhcccC--CCc
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS-------------AVFRLDYKGQSACLAQS--PQLHKQMSICG--DFG 315 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga-------------~~F~v~~~~~~~~L~~S--Pql~lk~li~~--g~~ 315 (553)
++.+.+|++|...||.||.|+.+++....-.. ..+.+.-. ...+||.| |.|.. .++- .--
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP-~~~~LR~sLlp~LL~--~l~~N~~~~ 81 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDP-ARLLLRTHTSAVQAR--ALAKLKPPI 81 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCC-ceEEEeccCcHHHHH--HHHhcCCCe
Confidence 45667899999999999999999754111000 11222100 03567644 55543 3343 456
Q ss_pred eeEEEeceecCCCCCCCCCcCcccceeEEecccc-CHHHHHHHHHHHHH
Q 008808 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFV 363 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~-~~~~~m~~~e~ll~ 363 (553)
|+||||+|||++.. +.+|+|||++|.+.++... ++.|++.+++.++.
T Consensus 82 ~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~ 129 (218)
T cd00496 82 RIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAK 129 (218)
T ss_pred eEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999875 5578999999999988641 68999999888885
No 70
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.49 E-value=5.5e-06 Score=84.93 Aligned_cols=112 Identities=20% Similarity=0.338 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCC---CCccceee-cCCCCceecc--cChhhHhhhcc----cCCCce
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---GGSAVFRL-DYKGQSACLA--QSPQLHKQMSI----CGDFGR 316 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e---gga~~F~v-~~~~~~~~L~--~SPql~lk~li----~~g~~r 316 (553)
-.+.+..|.+.+++.|...||-||+||++.-...- .....|.+ +.-|+.+.|| ..+++..-.+- ....-|
T Consensus 18 e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~r 97 (281)
T PRK12293 18 SAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLRADSTLDVVRIVTKRLGRSTEHKK 97 (281)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEECCcCCHHHHHHHHHhcccCCCcee
Confidence 34578888999999999999999999999643221 12235654 3356677777 33443322110 112349
Q ss_pred eEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 317 VFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 317 VfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
.|.+|+|||.|. .||+|+.+|+-..++..|++.++-+.+..+
T Consensus 98 ~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 98 WFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred EEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 999999999874 599999999887777666666655554433
No 71
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.43 E-value=2.1e-05 Score=84.40 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCCc----cceeec-C-CCCceecc--cChhhHh---hhcccC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRLD-Y-KGQSACLA--QSPQLHK---QMSICG 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v~-~-~~~~~~L~--~SPql~l---k~li~~ 312 (553)
-.+.+..|.+.+++.|...||.||+||++.-... ..|. ..|.+. . -|..+.|| ..+++.. ..+-..
T Consensus 20 e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~ 99 (392)
T PRK12421 20 EAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNRE 99 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCCC
Confidence 4567888999999999999999999999853211 1111 245543 2 35666676 3334332 111012
Q ss_pred CCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHH---HHHHHHHHHHHHH
Q 008808 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDRLFVTI 365 (553)
Q Consensus 313 g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~---~~m~~~e~ll~~i 365 (553)
..-|.|.+|+|||.+.....| .-||+|+.+|.-..++.. |++.++-+.+..+
T Consensus 100 ~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 100 GVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred CceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 346999999999998754344 479999999975544433 6676666665544
No 72
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=98.43 E-value=2.3e-05 Score=85.10 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCC-C-----ccceee-cCCCCceecc--cChhhHh---hhcc
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEG-G-----SAVFRL-DYKGQSACLA--QSPQLHK---QMSI 310 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~eg-g-----a~~F~v-~~~~~~~~L~--~SPql~l---k~li 310 (553)
-...+..|.+.+|+.|...||-||.||++.... .-| . ...|.+ +.-|..+.|| ..|.+.. +...
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~~iaR~~~~~~~ 96 (430)
T CHL00201 17 EINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTAGIVRAFIENKM 96 (430)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcHHHHHHHHHccc
Confidence 345788999999999999999999999995421 111 1 235554 3346778887 3344332 1111
Q ss_pred cC-C-CceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 311 CG-D-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 311 ~~-g-~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
.. . .-|.|++|+|||+|.....|- -||||+++|.-..
T Consensus 97 ~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~ 135 (430)
T CHL00201 97 DYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGS 135 (430)
T ss_pred cccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECC
Confidence 11 2 349999999999998654553 6999999997543
No 73
>PLN02972 Histidyl-tRNA synthetase
Probab=98.43 E-value=7.5e-06 Score=93.07 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC------CCCCccceee-cCCCCceecccChhhHhhhcccC---CC
Q 008808 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRL-DYKGQSACLAQSPQLHKQMSICG---DF 314 (553)
Q Consensus 245 ~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egga~~F~v-~~~~~~~~L~~SPql~lk~li~~---g~ 314 (553)
-.-..+|..|...+++.|...||.||+||++.... .+.....|.+ +.-|+.+.||---=.-.=++++. ..
T Consensus 338 P~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDlTvPiAR~vA~n~~~p 417 (763)
T PLN02972 338 KEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGITS 417 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeCCCChHHHHHHHHhCCCCc
Confidence 45567899999999999999999999999985321 1111124554 33566677762221111122221 12
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cC---HHHHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KH---YSEVMDIVDRLFVT 364 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~---~~~~m~~~e~ll~~ 364 (553)
-|.|+||+|||.|.. ..-+.-||+|+++|.... +. =-|++.++-+.+..
T Consensus 418 ~KrYyiG~VFR~e~p-qkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 418 FKRYQIAKVYRRDNP-SKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred ceEEEeccEEecCCC-CCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 478889999999975 334568999999998643 11 14566666665544
No 74
>PLN02530 histidine-tRNA ligase
Probab=98.41 E-value=6.8e-06 Score=90.64 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc----cceee-cCCCCceecc--cChhhHhhhcccC---
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS----AVFRL-DYKGQSACLA--QSPQLHKQMSICG--- 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga----~~F~v-~~~~~~~~L~--~SPql~lk~li~~--- 312 (553)
.-.+++..|.+.+|+.|...||.||.||+|.... ...|. ..|.+ +.-|+.+.|| ..|++. ++++.
T Consensus 82 ~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~ia--R~~~~~~~ 159 (487)
T PLN02530 82 EDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLA--RLVLQKGK 159 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecCCCCcHHHH--HHHHhccc
Confidence 4456789999999999999999999999996421 01111 24553 3456777777 333333 22221
Q ss_pred ---CCceeEEEeceecCCCCCCCCCcCcccceeEEeccccC---HHHHHHHHHHHHH
Q 008808 313 ---DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH---YSEVMDIVDRLFV 363 (553)
Q Consensus 313 ---g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~---~~~~m~~~e~ll~ 363 (553)
-.-|.|++|+|||.|..... +.-||+|+++|.-..++ -.|++.++.+.+.
T Consensus 160 ~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~ 215 (487)
T PLN02530 160 SLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAELLAAIVTFFK 215 (487)
T ss_pred ccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHHHHHHHHHHH
Confidence 12499999999999985333 45799999999754322 1345555444443
No 75
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=98.37 E-value=6.5e-06 Score=89.24 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC--C---CCCc----cceee-cCCCCceecc--cChhhHhhhcccC--
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--S---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQMSICG-- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~--~---egga----~~F~v-~~~~~~~~L~--~SPql~lk~li~~-- 312 (553)
-..++..|.+.+++.|...||.||.||+|.... . ..+. ..|.+ +.-|+.+.|| ..+++.. +++.
T Consensus 17 ~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~iaR--~va~~~ 94 (423)
T PRK12420 17 EQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIPFAK--VVAMNP 94 (423)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHHHHH--HHHhCc
Confidence 456788899999999999999999999996421 1 1111 24553 3356777777 2333322 2221
Q ss_pred --CCc-eeEEEeceecCCCCCCCCCcCcccceeEEeccccCH---HHHHHHHHHHHHH
Q 008808 313 --DFG-RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (553)
Q Consensus 313 --g~~-rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~---~~~m~~~e~ll~~ 364 (553)
... |.|++|+|||.|.. ..-+.-||+|+.+|.-..++. -|++.++-+.+..
T Consensus 95 ~~~~p~r~~y~g~vfR~~~~-~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~ 151 (423)
T PRK12420 95 NIRLPFKRYEIGKVFRDGPI-KQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRR 151 (423)
T ss_pred CCCCCeeEEEEcceECCCCC-CCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHH
Confidence 122 89999999999975 344678999999997433221 4566655555443
No 76
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.35 E-value=8.3e-06 Score=87.51 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C---CCCccceee-cC-CCCceecc--cChhhHhhhcccC--
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---EGGSAVFRL-DY-KGQSACLA--QSPQLHKQMSICG-- 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~---egga~~F~v-~~-~~~~~~L~--~SPql~lk~li~~-- 312 (553)
.-.+.+..+.+.+++.|...||.||.||++.... . +.....|.+ +. -|..+.|| ..+++.. +++.
T Consensus 15 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR--~~a~~~ 92 (391)
T PRK12292 15 EEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIAR--IAATRL 92 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHH--HHHHhc
Confidence 3456788999999999999999999999995321 1 111225554 33 46777887 3444432 2221
Q ss_pred ----CCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCH---HHHHHHHHHHHHHH
Q 008808 313 ----DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVTI 365 (553)
Q Consensus 313 ----g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~---~~~m~~~e~ll~~i 365 (553)
..-|+|.+|+|||.|.. ..-+.-||+|+.+|.-..++. -|++.++-+.+..+
T Consensus 93 ~~~~~p~r~~y~g~vfR~~~~-~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 93 ANRPGPLRLCYAGNVFRAQER-GLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred cCCCCCeEEEeeceeeecCCC-cCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 23499999999999975 344568999999998543332 45666655555443
No 77
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.32 E-value=1.4e-06 Score=82.64 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhH-hCCcEEEecceeeccCC---CCC-----ccceeecCCC-CceecccChhhHh-----hhccc-C-
Q 008808 250 IQSQVGNIFRQFLL-SENFVEIHTPKLIAGSS---EGG-----SAVFRLDYKG-QSACLAQSPQLHK-----QMSIC-G- 312 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~~~~---egg-----a~~F~v~~~~-~~~~L~~SPql~l-----k~li~-~- 312 (553)
++.+|++.+++.+. +.||.||.||.|..... -|. ...|.+.--+ ..++|+-+.+... ..... .
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 57889999999999 99999999999975321 111 2255554333 5689987665432 22222 1
Q ss_pred -CCceeEEEeceecCCC--CCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHH
Q 008808 313 -DFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (553)
Q Consensus 313 -g~~rVfeIg~~FR~E~--~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~ 367 (553)
--=|+|+||+|||+|. ..+...+-||+|.|++.. ..+ ++..+..++++..+..
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f-~~~-~~~~~~~~~~~~~~~~ 136 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIF-CTP-EQSEEEFEELLELYKE 136 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEE-ESS-HHHHHHHHHHHHHHHH
T ss_pred cCCeEEeecccccccccccccccceeeEeeeeceEEE-eCC-cccHHHHHHHHHHHHH
Confidence 1349999999999993 234667889999999965 445 7877777777665443
No 78
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=8e-05 Score=80.20 Aligned_cols=118 Identities=20% Similarity=0.256 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCC---CCcc-------ceeec-CCCCceecc---cChh--hHhhh-c
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---GGSA-------VFRLD-YKGQSACLA---QSPQ--LHKQM-S 309 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e---gga~-------~F~v~-~~~~~~~L~---~SPq--l~lk~-l 309 (553)
=+..+..|...+|+-+..-||.||.||++-....- .|.. .|... --|+.+.|| ++|= .+.+- +
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~en~~ 96 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAENKL 96 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHhccc
Confidence 35678889999999999999999999988532110 1211 23222 246777777 4442 22211 2
Q ss_pred ccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCH---HHHHHHHHHHHHHH
Q 008808 310 ICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVTI 365 (553)
Q Consensus 310 i~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~---~~~m~~~e~ll~~i 365 (553)
...-.-|.|.+|||||.|.....|- =||+||++|.--..+. -|++.++.+++..+
T Consensus 97 ~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l 154 (429)
T COG0124 97 DLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILEAL 154 (429)
T ss_pred cccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc
Confidence 2223569999999999998766665 7999999997543221 46666666665544
No 79
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.02 E-value=2.1e-05 Score=77.95 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc-----cceeecCC-----CCceecccChhhH-----hhhcc
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS-----AVFRLDYK-----GQSACLAQSPQLH-----KQMSI 310 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v~~~-----~~~~~L~~SPql~-----lk~li 310 (553)
+++..|.+.+++.|...||.||.||.|.... ..+.. ..|.+..- +..++||-.-... .+...
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~ 82 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEIL 82 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCc
Confidence 5788999999999999999999999997532 11111 24444332 4678887444322 22222
Q ss_pred c-CC-CceeEEEeceecCCCCC--CCCCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 311 C-GD-FGRVFETGPVFRAEDSY--THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 311 ~-~g-~~rVfeIg~~FR~E~~~--t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
. .. --|+|++|+|||+|.+. ...-.-||+|.|++.-.. . ++..+...+++.
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~-~-~~~~~~~~e~~~ 137 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGE-P-EEAEEERREWLE 137 (235)
T ss_pred cchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcC-H-HHHHHHHHHHHH
Confidence 1 12 34899999999999863 123457999999997532 2 234444444443
No 80
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=97.96 E-value=0.00055 Score=67.37 Aligned_cols=267 Identities=19% Similarity=0.237 Sum_probs=139.1
Q ss_pred HHHHHHh-HhCCcEEEecceeeccCCC-----CCcc---ceeecCC-CCceecccChhhHhhhccc----CCCceeEEEe
Q 008808 256 NIFRQFL-LSENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSIC----GDFGRVFETG 321 (553)
Q Consensus 256 ~~iR~fl-~~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~SPql~lk~li~----~g~~rVfeIg 321 (553)
+.|..+| ...|.+||..|+|...... .|.+ .|.|.-. +..+-.-.|---||.+.++ +.-+.+|.=.
T Consensus 17 n~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGlythM 96 (330)
T COG2502 17 NTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGLYTHM 96 (330)
T ss_pred HHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcCCcCCCceeeec
Confidence 3344444 3579999999999642110 1221 3444332 2234455677777777663 2236789999
Q ss_pred ceecC-CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCH
Q 008808 322 PVFRA-EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF 400 (553)
Q Consensus 322 ~~FR~-E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 400 (553)
+..|. |++-+..|.-=--|-|||..+. +-..-++.+.+.+..|...+... + ..+...|+... |.+ ..|+|
T Consensus 97 ~AlRpDeD~ld~~HSvYVDQWDWEkvi~-~g~rNl~yLK~tV~kIY~~ir~t---e-~av~~~~~~~~--~LP--~~ItF 167 (330)
T COG2502 97 KALRPDEDRLDPIHSVYVDQWDWEKVIP-DGDRNLAYLKSTVEKIYAAIRET---E-LAVSAEFGLAP--FLP--DQITF 167 (330)
T ss_pred hhcCCCcccccchheEEecccchhhhcC-CccccHHHHHHHHHHHHHHHHHH---H-HHHHHhcCCcc--cCc--cceEE
Confidence 99996 5555778865555566665443 22333333444444444333311 1 12222333211 111 23444
Q ss_pred HHHHHHHHHcCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEE------eccCCcCC-CCCCccc-CCCCcc-eeEEEE
Q 008808 401 EEGVQMLKDAGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYIL------HRYPLAVR-PFYTMPC-HDNSLY-SNSFDV 470 (553)
Q Consensus 401 ~ea~~ll~~~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii------~~~P~~~~-pfy~~~~-~~~~~~-~~~fdl 470 (553)
-..-++.... - ||+ ..-|..+.+ .++.-|.+= +.+|...| |=|.-.. ++..++ ...=|+
T Consensus 168 ihseeL~~ry-P------~L~~k~RE~ai~K----e~gAvFligIGg~LsdG~~hd~RaPdYDdWtt~se~~~~gLNGDi 236 (330)
T COG2502 168 IHSQELVARY-P------DLDPKGRERAIAK----ELGAVFLIGIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDI 236 (330)
T ss_pred eehHHHHHhC-C------CCCcchhhHHHHH----hhCcEEEEecccccCCCCcCCCCCCCccccCCcccccccccCCcE
Confidence 3333332222 1 222 233444432 334322221 23454443 2222111 111111 122344
Q ss_pred Ee------CCEEEeeceeccCCHHHHHHHHHHcCCCh-hcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccccc
Q 008808 471 FI------RGEEIISGAQRIHIPEFLAERAQACGIDV-KTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 471 ~~------~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~-~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
++ .+.|+.|-+.|. |.+.|+++++-.|... -..+|--..+.--+|-+-|.|||=-||+|+|+...+|.+|..
T Consensus 237 lvwn~~l~~afElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 237 LVWNPVLGDAFELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred EEechhccchheeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCcccHHHHHHHHhcccccceeee
Confidence 43 247999988886 5667778877666542 233444444444489999999999999999999999999853
No 81
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.92 E-value=4.5e-05 Score=82.30 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCC------Cccceee-cCCCCceeccc--ChhhHhhhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEG------GSAVFRL-DYKGQSACLAQ--SPQLHKQMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~eg------ga~~F~v-~~~~~~~~L~~--SPql~lk~li~~ 312 (553)
.-.+.+..+...+|+.|...||.||.||++.... ..| ....|.+ +-.|+.+.||- .|++..-.+--.
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~~ar~~~~~~ 95 (412)
T PRK00037 16 EESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTAPVVRAVIEHK 95 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcHHHHHHHHhCC
Confidence 3456788899999999999999999999995321 111 1235554 33577888873 355543211101
Q ss_pred -CCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 313 -DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 313 -g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
..-|+|++|+|||+|.. ...|.-||+|+++|.--
T Consensus 96 ~~p~r~~~~g~vfR~e~~-~~gr~ref~Q~g~ei~g 130 (412)
T PRK00037 96 LQPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIG 130 (412)
T ss_pred CCCeEEEEEcCccccCCC-CCCcccceEEcCeeeeC
Confidence 45699999999999976 44567999999999743
No 82
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=97.82 E-value=4.6e-05 Score=77.31 Aligned_cols=117 Identities=17% Similarity=0.092 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC------ccceeecCCC-----CceecccChhhHhhhcc--
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYKG-----QSACLAQSPQLHKQMSI-- 310 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~~-----~~~~L~~SPql~lk~li-- 310 (553)
-.+++.+|++.+++.+.+.||.||.||.|..... .+| .+.|.+.-.+ .+++|+-..+-.+=.++
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~ 110 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSK 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHh
Confidence 3578889999999999999999999999975422 121 2356653322 46888876443322221
Q ss_pred --cC--C-CceeEEEeceecCCCCCC--CCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 311 --CG--D-FGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 311 --~~--g-~~rVfeIg~~FR~E~~~t--~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
.+ . -=|+|+|++|||+|...+ .--.-||+|.|.+..+. +.++..+..++++..
T Consensus 111 ~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~-~~e~~~~~~~~~~~~ 170 (261)
T cd00778 111 WIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHA-TEEEAEEEVLQILDL 170 (261)
T ss_pred hccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccC-CHHHHHHHHHHHHHH
Confidence 11 1 248999999999998532 11346999999987776 577877777777643
No 83
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.78 E-value=0.0002 Score=72.86 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CC-----C-ccceeecCCC-----CceecccChhhHh-----hh
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----G-SAVFRLDYKG-----QSACLAQSPQLHK-----QM 308 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-----g-a~~F~v~~~~-----~~~~L~~SPql~l-----k~ 308 (553)
.+++.+|.+.+++-+...||.||.||.|..... .| . .+.|.+..-+ .+++|+-..+..+ ..
T Consensus 32 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~ 111 (264)
T cd00772 32 KAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKF 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhh
Confidence 457889999999999999999999999965321 11 1 2235543322 6788986655432 22
Q ss_pred ccc-CCC-ceeEEEeceecCCCCCCCC---CcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 309 SIC-GDF-GRVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 309 li~-~g~-~rVfeIg~~FR~E~~~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
... ..+ =|+|++++|||+|-. +.+ -.-||+|.|.+.... +-++..+.++.++.
T Consensus 112 i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~-~~e~a~~e~~~~~~ 169 (264)
T cd00772 112 IKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHA-DAEEADEEFLNMLS 169 (264)
T ss_pred hhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecC-CHHHHHHHHHHHHH
Confidence 211 122 399999999999953 322 246999999986434 56777776666664
No 84
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.69 E-value=7.6e-05 Score=75.43 Aligned_cols=93 Identities=20% Similarity=0.273 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhHhCC--cEEEecceeeccCCCCCccceeec-----CCCCceeccc--Chh---hHhhhcccC--C
Q 008808 248 FRIQSQVGNIFRQFLLSEN--FVEIHTPKLIAGSSEGGSAVFRLD-----YKGQSACLAQ--SPQ---LHKQMSICG--D 313 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~g--F~EV~TP~l~~~~~egga~~F~v~-----~~~~~~~L~~--SPq---l~lk~li~~--g 313 (553)
.+++..|.+.+|+.|...| |.||.||+|... ..|.+. .-+..++||- +|. .++...... .
T Consensus 32 ~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~ 105 (254)
T cd00774 32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRRK 105 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCCC
Confidence 4688999999999999885 999999999653 455553 2345678874 321 222222111 1
Q ss_pred -CceeEEEeceecCCCCCC--CCCcCcccceeEEec
Q 008808 314 -FGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEME 346 (553)
Q Consensus 314 -~~rVfeIg~~FR~E~~~t--~rHl~EFt~lE~e~a 346 (553)
-=|+||||+|||+|.+.. .--.-||||.|+|.-
T Consensus 106 lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f 141 (254)
T cd00774 106 LPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFF 141 (254)
T ss_pred CCchhhhhchhhccccCcccceeeeccchhhheeee
Confidence 238999999999997521 124579999999963
No 85
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=97.68 E-value=0.00015 Score=73.31 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC--CC-CC-----ccceeecC-CCCceecccChh-----hHhhhccc-C
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SE-GG-----SAVFRLDY-KGQSACLAQSPQ-----LHKQMSIC-G 312 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~--~e-gg-----a~~F~v~~-~~~~~~L~~SPq-----l~lk~li~-~ 312 (553)
.+++.+|.+.+++.|...||.||.||.|.... .. |. .+.|.+.- -+.+++|+...+ ++...+.. .
T Consensus 31 ~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~ 110 (255)
T cd00779 31 LRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANEIKSYK 110 (255)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhccccHh
Confidence 46788999999999999999999999996421 00 22 23566533 356788886533 23322211 1
Q ss_pred CC-ceeEEEeceecCCCCCCCC---CcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 313 DF-GRVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 313 g~-~rVfeIg~~FR~E~~~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
.+ =|+|++|+|||+|.. +.+ -.-||+|.|.+.... +-.+.....++++.
T Consensus 111 ~LPlr~~~~~~~FR~E~~-~~~Gl~R~reF~q~e~~~~~~-~~~~a~~~~~~i~~ 163 (255)
T cd00779 111 QLPLNLYQIQTKFRDEIR-PRFGLMRGREFLMKDAYSFDI-DEESLEETYEKMYQ 163 (255)
T ss_pred hCCHHHHhCcceecCCCC-CCCceeeeeeEeHhhheeccC-CHHHHHHHHHHHHH
Confidence 22 399999999999942 211 246999999997554 34455554444443
No 86
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.68 E-value=0.00017 Score=74.56 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCC-----CccceeecCCCCceecccChhhHhhhcccCC----
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~eg-----ga~~F~v~~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
.-.+++.+|.+++++.+.+.||.||.||.|.... ..| +...|.++ +.+++|+-..+..+=.++...
T Consensus 50 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~--~~~~~L~pt~e~~~~~l~~~~~~s~ 127 (297)
T cd00770 50 DGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE--GEDLYLIATAEVPLAALHRDEILEE 127 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--CCCEEEeecCCHHHHHHHhcccCCH
Confidence 3457889999999999999999999999997532 111 22356663 367888866665554333221
Q ss_pred ---CceeEEEeceecCCCC------CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 314 ---FGRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 314 ---~~rVfeIg~~FR~E~~------~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
-=|+|++|+|||+|-+ .+.--..||+|.|.+ .|..+ ++..+..++++..
T Consensus 128 ~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~-e~~~~~~~~~l~~ 185 (297)
T cd00770 128 EELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKP-EESWEELEELISN 185 (297)
T ss_pred hhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECc-hHHHHHHHHHHHH
Confidence 2489999999999964 122245799999997 46543 6666655555543
No 87
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.63 E-value=0.00035 Score=78.56 Aligned_cols=121 Identities=22% Similarity=0.247 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C---C-CCccceee-cCCCCceecccChh-----hHhhhccc-
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---E-GGSAVFRL-DYKGQSACLAQSPQ-----LHKQMSIC- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~---e-gga~~F~v-~~~~~~~~L~~SPq-----l~lk~li~- 311 (553)
-++++.+|.+.+|+.|.+.||.||.||.|.... + + -+.+.|.+ +-.+.+++|+-..+ ++...+..
T Consensus 46 g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~ 125 (565)
T PRK09194 46 GLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSY 125 (565)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhhhc
Confidence 356889999999999999999999999997421 1 1 12346665 33467888885333 22222221
Q ss_pred CC-CceeEEEeceecCCCCCCCC---CcCcccceeEEeccccCHHHHHHHHHHHH---HHHHHHH
Q 008808 312 GD-FGRVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLF---VTIFDGL 369 (553)
Q Consensus 312 ~g-~~rVfeIg~~FR~E~~~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll---~~i~~~l 369 (553)
.. --|+|+|++|||.|.. +.+ -.-||+|.|.|.... +-.+.....+.++ ..+++.+
T Consensus 126 ~~LP~r~yqi~~~fR~E~r-p~~Gl~R~reF~q~d~~~f~~-~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 126 KQLPLNLYQIQTKFRDEIR-PRFGLMRGREFIMKDAYSFHA-DEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred ccCCeEEEEeeCCccCCCC-CCCcccccccEEEeeEEEEcC-ChHHHHHHHHHHHHHHHHHHHHh
Confidence 12 2499999999999942 211 246999999997543 3444444444554 4444443
No 88
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.61 E-value=0.00036 Score=72.16 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceeecCCCCceecccChhhH-----hhhccc-CC
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRLDYKGQSACLAQSPQLH-----KQMSIC-GD 313 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v~~~~~~~~L~~SPql~-----lk~li~-~g 313 (553)
.+++..|.+.+++.+.+.||.||.||.|.... ..|. .+.|.+..-+..++||-..+-. .+.... ..
T Consensus 30 ~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~l~LRP~~~~~~~~~~~~~~~s~~~ 109 (298)
T cd00771 30 AIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRD 109 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEeccCCceEEEcccCCHHHHHHHHhhccchhh
Confidence 56788999999999999999999999996432 1121 2356665445678887433322 222211 12
Q ss_pred C-ceeEEEeceecCCCCCCCC---CcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 314 F-GRVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 314 ~-~rVfeIg~~FR~E~~~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
+ =|+|++|+|||+|.+.+.+ -.-||+|.|.+.- .. -++..+.+++++..
T Consensus 110 LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~-~~-~e~~~~e~~e~l~~ 162 (298)
T cd00771 110 LPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF-CT-PDQIKEEIKGVLDL 162 (298)
T ss_pred CCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE-eC-CcchHHHHHHHHHH
Confidence 2 3999999999999763211 2369999999974 32 24444444444443
No 89
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.61 E-value=0.00041 Score=77.84 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C----CCCccceeecC-CCCceecccChh-----hHhhhccc-
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S----EGGSAVFRLDY-KGQSACLAQSPQ-----LHKQMSIC- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~----egga~~F~v~~-~~~~~~L~~SPq-----l~lk~li~- 311 (553)
-.+++.+|.+.+|+.|...||.||.||.|.... + .-+.+.|.+.. .+..++|+-..| ++...+..
T Consensus 46 g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~sy 125 (568)
T TIGR00409 46 GLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSY 125 (568)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhc
Confidence 356789999999999999999999999997531 1 11334677633 567888885422 22222211
Q ss_pred CCC-ceeEEEeceecCCC-CCCC-CCcCcccceeEEeccccCHHHHHHHHHHHH---HHHHHHH
Q 008808 312 GDF-GRVFETGPVFRAED-SYTH-RHLCEFTGLDVEMEIKKHYSEVMDIVDRLF---VTIFDGL 369 (553)
Q Consensus 312 ~g~-~rVfeIg~~FR~E~-~~t~-rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll---~~i~~~l 369 (553)
..+ -|+|+|++|||+|. .+-. --.-||+|.|.|.-. .+..+.....+.|+ ..+|+.+
T Consensus 126 r~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~-~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 126 KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFH-SDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred cccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEe-CChHHHHHHHHHHHHHHHHHHHHh
Confidence 123 39999999999993 2111 024699999999754 45566555566554 4455443
No 90
>PLN02908 threonyl-tRNA synthetase
Probab=97.55 E-value=0.00037 Score=80.10 Aligned_cols=121 Identities=16% Similarity=0.112 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc-----cceeecCCCCceecccChhhHh-----hhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS-----AVFRLDYKGQSACLAQSPQLHK-----QMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v~~~~~~~~L~~SPql~l-----k~li~~ 312 (553)
.-.+++..|++.+|+.+...||.||.||.|.... .-|.. +.|.++--+..++|+--.+-.. +....-
T Consensus 319 ~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~ 398 (686)
T PLN02908 319 HGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSY 398 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccCh
Confidence 4458899999999999999999999999996432 11211 2455543457788874443332 222111
Q ss_pred -C-CceeEEEeceecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG 368 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~ 368 (553)
. -=|+|++|+|||+|-+. +..-.-||||.|.+. |. .-+++.+.+++++..+..-
T Consensus 399 r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~-~~~q~~~e~~~~l~~~~~v 457 (686)
T PLN02908 399 RELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FC-REDQIKDEVKGVLDFLDYV 457 (686)
T ss_pred hhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-Ec-CHHHHHHHHHHHHHHHHHH
Confidence 1 23899999999999762 222356999999997 65 3577888777777655443
No 91
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.52 E-value=0.00059 Score=70.71 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC------CCCCccceee-cCCCCceeccc--ChhhHhhhcc---cCC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRL-DYKGQSACLAQ--SPQLHKQMSI---CGD 313 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egga~~F~v-~~~~~~~~L~~--SPql~lk~li---~~g 313 (553)
.-.+.+..|.+.+++.|...||.||+||++.... .+...+.|.+ +--|..+.||- .+++..-.+. ...
T Consensus 8 ~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a~~~~~~~ 87 (311)
T PF13393_consen 8 EEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALRPDLTVPIARYVARNLNLPR 87 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE-SSSHHHHHHHHHHCCGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccCCCCcHHHHHHHHHhcCcCC
Confidence 3457788999999999999999999999996421 1112245554 34667777773 2333321111 244
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHH---HHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDRLFV 363 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~---~~m~~~e~ll~ 363 (553)
.-|+|.+|+|||.+.. ...+.-||+|+.+|.-...+.. |++.++.+++.
T Consensus 88 ~~r~~y~g~vfR~~~~-~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 88 PKRYYYIGPVFRYERP-GKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SEEEEEEEEEEEEETT-TTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcceeecccc-CCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999975 3346689999999975544443 66666666664
No 92
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.46 E-value=0.00059 Score=77.15 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeecc---CCCC-----CccceeecCCCCceecccChhh-----HhhhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG---SSEG-----GSAVFRLDYKGQSACLAQSPQL-----HKQMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~---~~eg-----ga~~F~v~~~~~~~~L~~SPql-----~lk~li~~ 312 (553)
.-.+++..|.+++++.+.+.||.+|.||.|... ..-| +.+.|.+.--+..++|+-..+. |++....-
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~Sy 304 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISY 304 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCch
Confidence 446889999999999999999999999988322 2222 2346666544678888855542 23322211
Q ss_pred -C-CceeEEEec-eecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGP-VFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG 368 (553)
Q Consensus 313 -g-~~rVfeIg~-~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~ 368 (553)
. -=|+||+|+ |||+|-+. +..-+-||||-|.+. |..+.++.++.+++++..+..-
T Consensus 305 rdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~-f~~~~eqa~~e~~~~l~~~~~i 365 (613)
T PRK03991 305 KNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHT-LCKDMEQAMEEFEKQYEMILET 365 (613)
T ss_pred hhCChhhheecchheeCCCCCCCcCcccccceEeeeEEE-EECCHHHHHHHHHHHHHHHHHH
Confidence 1 248999999 99999752 223467999999986 4445788888888877665443
No 93
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.44 E-value=0.00072 Score=73.37 Aligned_cols=115 Identities=12% Similarity=0.209 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhH-hCCcEEEecceeeccCC---CC-----CccceeecCCCCceecccChhhHhhhcccCC----
Q 008808 247 IFRIQSQVGNIFRQFLL-SENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
-.++..+|++++++.+. +.||.||.||.|..... .| +...|.+. +.++||+-..|..+=.+....
T Consensus 169 ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~--~~~~~L~pTsE~~l~~l~~~~~~s~ 246 (425)
T PRK05431 169 GARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE--DDDLYLIPTAEVPLTNLHRDEILDE 246 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec--CCCEEEEeCCcHHHHHHHhcccCCH
Confidence 45688899999999998 99999999999975321 12 12356664 567888866665543333222
Q ss_pred ---CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 314 ---FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 314 ---~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
-=|+|++++|||+|-.. +---..||+|.|.+ .|.. -++..+..++|+...
T Consensus 247 ~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~-~e~s~~~~~~~l~~~ 305 (425)
T PRK05431 247 EELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTK-PEDSYAELEELTANA 305 (425)
T ss_pred HhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEEC-HHHHHHHHHHHHHHH
Confidence 24899999999999641 11124699999998 5664 477777777776543
No 94
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.43 E-value=0.00061 Score=76.82 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceee-cCCCCceecccC--hh---hHhhhcccC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRL-DYKGQSACLAQS--PQ---LHKQMSICG 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v-~~~~~~~~L~~S--Pq---l~lk~li~~ 312 (553)
-.+++..|.+.+|+.+...||.||.||.|.... ..|. .+.|.+ +--|+.++||-- |. +|.+.....
T Consensus 205 ~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~ 284 (575)
T PRK12305 205 GAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSY 284 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCCh
Confidence 356789999999999999999999999996431 1122 124554 334577888732 22 122222111
Q ss_pred -CC-ceeEEEeceecCCCCCC---CCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHH
Q 008808 313 -DF-GRVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG 368 (553)
Q Consensus 313 -g~-~rVfeIg~~FR~E~~~t---~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~ 368 (553)
.+ =|.|++|+|||+|.+.. .--.-||+|+|.+. |. .-+...+.+.+++..+...
T Consensus 285 ~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~-~~~~~~~e~~e~i~l~~~~ 343 (575)
T PRK12305 285 RDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FC-TPDQIEDEILKVLDFVLEL 343 (575)
T ss_pred hhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-Ee-CHHHHHHHHHHHHHHHHHH
Confidence 22 39999999999998631 11236999999995 54 3455555555555544433
No 95
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.40 E-value=0.0012 Score=71.47 Aligned_cols=115 Identities=16% Similarity=0.235 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CC-----CccceeecCCCCceecccChhhHhhhcccC------
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG------ 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~SPql~lk~li~~------ 312 (553)
-.++..+|++++++.+.+.||.||.||.|..... .| +...|.+. +.++||+-..|..+-.+...
T Consensus 172 g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~--~~~~~L~pTsE~~~~~~~~~~i~s~~ 249 (418)
T TIGR00414 172 GAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE--DTDLYLIPTAEVPLTNLHRNEILEEE 249 (418)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--CCCEEEEeCCcHHHHHHHhCcCCChH
Confidence 4677899999999999999999999999975321 11 12356554 46788887665544322222
Q ss_pred C-CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
. --|+|++++|||+|-+. +---..||+|.|.+ .|.. -++..+..++++...
T Consensus 250 ~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~-~f~~-~e~s~~~~~~~~~~~ 307 (418)
T TIGR00414 250 ELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELV-KFCK-PEESAEELEEMTSDA 307 (418)
T ss_pred hCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEE-EEcC-HHHHHHHHHHHHHHH
Confidence 1 25899999999999631 11134699999996 4653 577777666666543
No 96
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=97.37 E-value=0.0031 Score=69.57 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHh-HhCCcEEEecceeeccC---CCCCcc-----ceeecCCC--Cc------eec-----------
Q 008808 247 IFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGS---SEGGSA-----VFRLDYKG--QS------ACL----------- 298 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl-~~~gF~EV~TP~l~~~~---~egga~-----~F~v~~~~--~~------~~L----------- 298 (553)
-.++...+.+++++.+ ...||.||-||.|.... ..|... .|.|..++ .+ .||
T Consensus 222 Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~ 301 (517)
T PRK00960 222 MTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKL 301 (517)
T ss_pred HHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccccc
Confidence 4567788899998875 55699999999997532 112222 34442111 00 222
Q ss_pred -----------cc--Chh---hHhhhcccCCCc---eeEE-EeceecCCCC--CCCCCcCcccceeEEeccccCHHHHHH
Q 008808 299 -----------AQ--SPQ---LHKQMSICGDFG---RVFE-TGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMD 356 (553)
Q Consensus 299 -----------~~--SPq---l~lk~li~~g~~---rVfe-Ig~~FR~E~~--~t~rHl~EFt~lE~e~a~~~~~~~~m~ 356 (553)
+- -|- +|....+ ..-+ |+|+ .|+|||+|.. ++..-.-||+|.|.- .|. .-+++.+
T Consensus 302 ~~~L~~~~yvLrPa~Cp~~y~~~~~~il-s~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~-tpEqs~e 378 (517)
T PRK00960 302 KEKLRDPGYVLAPAQCEPFYQFFQGETV-DVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLG-TPEQVEE 378 (517)
T ss_pred ccccccccccccccCcHHHHHHHhCCcC-ChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEe-CHHHHHH
Confidence 21 111 2222222 2223 8999 6699999952 223335699999997 565 5788888
Q ss_pred HHHHHHH
Q 008808 357 IVDRLFV 363 (553)
Q Consensus 357 ~~e~ll~ 363 (553)
..++++.
T Consensus 379 e~e~ll~ 385 (517)
T PRK00960 379 IRDELLK 385 (517)
T ss_pred HHHHHHH
Confidence 8888773
No 97
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.35 E-value=0.00092 Score=74.55 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc-----cceeecCCCCceecccChhhHhhhcccC------
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS-----AVFRLDYKGQSACLAQSPQLHKQMSICG------ 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v~~~~~~~~L~~SPql~lk~li~~------ 312 (553)
=.++|..|.+.+|+.+.+.||.||.||.|.... ..|+- +.|.++--+..++|+--..-..=++...
T Consensus 167 G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~Syr 246 (545)
T PRK14799 167 GQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYR 246 (545)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChh
Confidence 457899999999999999999999999984321 11221 1344443467788874443333222221
Q ss_pred C-CceeEEEeceecCCCCCCC---CCcCcccceeEEeccccCHHHHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSYTH---RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~t~---rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~ 367 (553)
. -=|.|++|+|||+|.+... .-.-||||.|... |. .-.++.+.+.+++..+..
T Consensus 247 dLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~-~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 247 DLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FL-REDQLREEIKMLISKTVE 303 (545)
T ss_pred hCCHhhEEecceecCCCCCCccccccceeEEEcccEE-Ee-CHHHHHHHHHHHHHHHHH
Confidence 1 2389999999999987321 2356999999987 65 356665666555554443
No 98
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.32 E-value=0.00082 Score=76.74 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceee-cCCCCceecccC--hh---hHhhhccc
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRL-DYKGQSACLAQS--PQ---LHKQMSIC 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v-~~~~~~~~L~~S--Pq---l~lk~li~ 311 (553)
.-.+++..|.+.+|+.+...||.||.||+|.... ..|. .+.|.+ +--|+.+.||-- |. +|.+....
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s 347 (638)
T PRK00413 268 KGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGLRS 347 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcCCC
Confidence 3456789999999999999999999999995432 1122 124554 334577888732 22 22322221
Q ss_pred -CCC-ceeEEEeceecCCCCCC---CCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 312 -GDF-GRVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 312 -~g~-~rVfeIg~~FR~E~~~t---~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
..+ =|+|++|+|||+|.+.. ..-.-||||+|.+. |.. -....+.+.+++..
T Consensus 348 ~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~-~g~-~~~~~~e~~eii~l 403 (638)
T PRK00413 348 YRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHI-FCT-PEQIEEEVKKVIDL 403 (638)
T ss_pred hhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEE-EcC-HHHHHHHHHHHHHH
Confidence 122 39999999999998631 11235999999996 542 23333333444443
No 99
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.32 E-value=0.0011 Score=75.70 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCcc-----ceeecCCCCceecccChhhHhhhcccC------C-
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGSA-----VFRLDYKGQSACLAQSPQLHKQMSICG------D- 313 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga~-----~F~v~~~~~~~~L~~SPql~lk~li~~------g- 313 (553)
+++..|.+.+++.+...||.||.||.|.... ..|... .|.++--+..++|+-..+-..=++... .
T Consensus 275 ~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~L 354 (639)
T PRK12444 275 IIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYREL 354 (639)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhC
Confidence 4566699999999999999999999996432 113222 342332356677875554443322222 2
Q ss_pred CceeEEEeceecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~ 366 (553)
.-|+|++|+|||.|.+. +.--.-||+|.|.+ .|. .-+++.+.+++++..+.
T Consensus 355 P~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~-~~~~~~~e~~~~~~~~~ 408 (639)
T PRK12444 355 PIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFV-TPDQIEDEIKSVMAQID 408 (639)
T ss_pred CceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EEC-CHHHHHHHHHHHHHHHH
Confidence 24999999999999753 21124699999999 675 45666666555555433
No 100
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.30 E-value=0.00062 Score=74.98 Aligned_cols=115 Identities=16% Similarity=0.058 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC------ccceeecCC-----CCceecccCh-----hhHhh
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSP-----QLHKQ 307 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~SP-----ql~lk 307 (553)
-++++..|.+.+++.|...||.||.||.|..... ++| .+.|.+... +.+++|+-.. .+|..
T Consensus 43 g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~ 122 (477)
T PRK08661 43 GYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKK 122 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHh
Confidence 4578899999999999999999999999965421 121 235666432 4678998555 33444
Q ss_pred hccc-CC-CceeEEEeceecCCCCCCC--CCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 308 MSIC-GD-FGRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 308 ~li~-~g-~~rVfeIg~~FR~E~~~t~--rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
.+.. .+ -=|+|++++|||+|.+ ++ --.-||+|.|.+..+. +.++..+.++.++.
T Consensus 123 ~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~-~~eea~~e~~~~l~ 180 (477)
T PRK08661 123 WIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHA-TEEEAEEETLEMLE 180 (477)
T ss_pred hhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeC-CHHHHHHHHHHHHH
Confidence 3322 12 2489999999999986 43 2457999999987776 57888777776664
No 101
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.30 E-value=0.00093 Score=75.17 Aligned_cols=115 Identities=19% Similarity=0.153 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCC--C-CCc-----cceeecC-CCCceecccChhhH-----hhhcccC-
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GGS-----AVFRLDY-KGQSACLAQSPQLH-----KQMSICG- 312 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e-gga-----~~F~v~~-~~~~~~L~~SPql~-----lk~li~~- 312 (553)
.+++..|.+.+|+.+...||.||.||+|..... . |.. +.|.+.- -|+.++||-...-. .+..+..
T Consensus 200 ~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~ 279 (563)
T TIGR00418 200 ATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYR 279 (563)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChH
Confidence 457889999999999999999999999964320 1 222 2344422 35788888544333 2222221
Q ss_pred C-CceeEEEeceecCCCCCCC----CCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSYTH----RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~t~----rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
. .-|+|++|+|||+|.+ +. --.-||+|.|.|. |.. -.+.....++++..+
T Consensus 280 ~lP~rl~~~g~~fR~E~~-g~~~Gl~R~reF~q~~~~~-~~~-~~~~~~e~~~~i~~~ 334 (563)
T TIGR00418 280 DLPLRIAELGYSHRYEQS-GELHGLMRVRGFTQDDAHI-FCT-EDQIKEEFKNQFRLI 334 (563)
T ss_pred HCCceeeEeccccCCCCC-cCCcCcccccceEEeeeEE-EcC-HHHHHHHHHHHHHHH
Confidence 2 2499999999999964 32 1236999999996 432 345444444444433
No 102
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.19 E-value=0.0018 Score=70.71 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCC-----Cccceeec-CCCCceecccCh-----hhHhhhccc-C
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG-----GSAVFRLD-YKGQSACLAQSP-----QLHKQMSIC-G 312 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~eg-----ga~~F~v~-~~~~~~~L~~SP-----ql~lk~li~-~ 312 (553)
.+++.+|.+.+|+-+...||.||.||.|.... ..| +.+.|.+. -.+..++|+... .++...... .
T Consensus 47 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syr 126 (439)
T PRK12325 47 LKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYK 126 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhch
Confidence 57899999999999999999999999997431 112 23356653 346778888522 233332211 1
Q ss_pred C-CceeEEEeceecCCCCCCC---CCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSYTH---RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~t~---rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
. -=|+||||++||+|.. +. .-.-||+|-|.|.-.. +.+++.+...+++.
T Consensus 127 dLPlrl~q~~~~fR~E~~-~~~GL~R~reF~~~D~h~f~~-~~~~a~~~~~~~~~ 179 (439)
T PRK12325 127 DLPLNLYHIQWKFRDEIR-PRFGVMRGREFLMKDAYSFDL-DEEGARHSYNRMFV 179 (439)
T ss_pred hhchHheEecCEecCCCC-CCCCccccceEeEeccEEEeC-CHHHHHHHHHHHHH
Confidence 1 2589999999999954 31 1357999999986434 45666665555544
No 103
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.13 E-value=0.001 Score=73.18 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCC------CccceeecCC-----CCceecccChhhHh-----hh
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG------GSAVFRLDYK-----GQSACLAQSPQLHK-----QM 308 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~eg------ga~~F~v~~~-----~~~~~L~~SPql~l-----k~ 308 (553)
++++..|.+.+|+-+.+.||.||.||.|.... .+| +.+.|.+... +.+++|+-..+-.+ +.
T Consensus 38 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~ 117 (472)
T TIGR00408 38 FKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKW 117 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhcc
Confidence 45689999999999999999999999996432 122 2236776543 37889986655433 22
Q ss_pred ccc-CC-CceeEEEeceecCCCCCC--CCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 309 SIC-GD-FGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 309 li~-~g-~~rVfeIg~~FR~E~~~t--~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
... .. --|+|++++|||+|.+.+ .--..||+|-|.+..+. +.++..+.++.++...
T Consensus 118 i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~-~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 118 VKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHA-TAEEAEEQVLRALDIY 177 (472)
T ss_pred ccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhC-CHHHHHHHHHHHHHHH
Confidence 211 12 239999999999998632 11357999999986665 5777777777666433
No 104
>PLN02837 threonine-tRNA ligase
Probab=96.94 E-value=0.0038 Score=70.91 Aligned_cols=119 Identities=14% Similarity=0.072 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCC-----CccceeecC-CCCceecccChhh-----Hhhhccc
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG-----GSAVFRLDY-KGQSACLAQSPQL-----HKQMSIC 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~eg-----ga~~F~v~~-~~~~~~L~~SPql-----~lk~li~ 311 (553)
.-.+++.+|++++++....+||.||.||.|.... .-| +.+.|.+.- -+..+.|+.+.+- |++....
T Consensus 245 ~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~S 324 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHS 324 (614)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCC
Confidence 4457899999999999999999999999996432 111 122454422 2344566655432 2332211
Q ss_pred C--CCceeEEEeceecCCCCCC---CCCcCcccceeEEeccccCHHHHHHHHHHHHHHHH
Q 008808 312 G--DFGRVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (553)
Q Consensus 312 ~--g~~rVfeIg~~FR~E~~~t---~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~ 366 (553)
- ---|++++|+|||+|-+.. ---..||+|.|.+. |. ..++..+.+++++..+-
T Consensus 325 yrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~-~~~q~~~e~~~~l~~~~ 382 (614)
T PLN02837 325 YRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FC-LEDQIKDEIRGVLDLTE 382 (614)
T ss_pred hhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-Ee-CHHHHHHHHHHHHHHHH
Confidence 0 1348999999999997521 12346899999995 76 46777777777766443
No 105
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.82 E-value=0.0071 Score=64.56 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=70.1
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCC---CCCc----cceee-cCCCCceecc--cChhhHhhhc--ccCCCceeEEE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQMS--ICGDFGRVFET 320 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v-~~~~~~~~L~--~SPql~lk~l--i~~g~~rVfeI 320 (553)
.|.+.+++.|...||.||+||++..... ..|. ..|.+ +--|..+.|| ..+++..-.+ -....-|.|.+
T Consensus 9 ~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~~Y~ 88 (373)
T PRK12295 9 AAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEPARYAYL 88 (373)
T ss_pred HHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEEEEE
Confidence 6788899999999999999999964321 1111 24554 3346777777 2333332111 01334599999
Q ss_pred eceecCCCCCCCCCcCcccceeEEeccccC----HHHHHHHHHHHHHHH
Q 008808 321 GPVFRAEDSYTHRHLCEFTGLDVEMEIKKH----YSEVMDIVDRLFVTI 365 (553)
Q Consensus 321 g~~FR~E~~~t~rHl~EFt~lE~e~a~~~~----~~~~m~~~e~ll~~i 365 (553)
|+|||.+.. +.-||+|+.+|.-...+ --|++.++-+.+..+
T Consensus 89 g~VfR~~~g----r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 89 GEVFRQRRD----RASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred ccEEECCCC----CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 999999832 24699999999854212 237777777666443
No 106
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=96.81 E-value=0.017 Score=46.93 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=55.7
Q ss_pred EEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEE
Q 008808 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (553)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~ 186 (553)
++|.|-|.++|...+.++|++|.|.++.+.|++..+.. .++...|..|+.|.|+|.+...+. .+++.|.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~------~~~~~~l~~g~~v~v~g~v~~~~~-----~~~~~l~ 70 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNA------RRLGFPLEEGMEVLVRGKVSFYEP-----RGGYQLI 70 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchh------hhCCCCCCCCCEEEEEEEEEEECC-----CCEEEEE
Confidence 68999999998522259999999999999999987521 223356999999999999985321 2357777
Q ss_pred EeEEE
Q 008808 187 IKKLY 191 (553)
Q Consensus 187 v~~i~ 191 (553)
++++.
T Consensus 71 v~~i~ 75 (78)
T cd04489 71 VEEIE 75 (78)
T ss_pred EEEEE
Confidence 77764
No 107
>PLN02678 seryl-tRNA synthetase
Probab=96.78 E-value=0.0047 Score=67.20 Aligned_cols=117 Identities=11% Similarity=0.117 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC-C--CC-----ccceeecCCCCceecccC------hhhHhhhcccC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--GG-----SAVFRLDYKGQSACLAQS------PQLHKQMSICG 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e--gg-----a~~F~v~~~~~~~~L~~S------Pql~lk~li~~ 312 (553)
..+++..|++++++++..+||.||.||.|..... . |. ...|.+.--|.+.||.-. |-..-+.+--.
T Consensus 173 ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~~ 252 (448)
T PLN02678 173 GVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDPK 252 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCHH
Confidence 3678999999999999999999999999964221 1 11 124555322234555322 22211111011
Q ss_pred C-CceeEEEeceecCCCCC---C---CCCcCcccceeEEeccccCHHH--HHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSY---T---HRHLCEFTGLDVEMEIKKHYSE--VMDIVDRLFVTI 365 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~---t---~rHl~EFt~lE~e~a~~~~~~~--~m~~~e~ll~~i 365 (553)
. -=|++++++|||+|-+. + ..-.-+|+++|.+. |.. -++ ..+..|+|+...
T Consensus 253 eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~-~~~-pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 253 ELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITS-PNGNESWEMHEEMLKNS 312 (448)
T ss_pred hCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEE-EEC-CCchhHHHHHHHHHHHH
Confidence 1 35899999999999751 1 11245899999954 432 234 566666666543
No 108
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.0021 Score=66.46 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=35.2
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
-|+|.|-+|||||.. +.+||.||.|+|=-.+-. -.+-++|.++++++
T Consensus 334 ~K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~gltLgdLig~l~~ff 381 (483)
T KOG2784|consen 334 AKYFSIDRVFRNETV-DATHLAEFHQVEGVIADKGLTLGDLIGILMEFF 381 (483)
T ss_pred ccccchhhhhhcccc-chHHHHHHhhhceeeecCCCcHHHHHHHHHHHH
Confidence 599999999999997 899999999999765532 12345555554443
No 109
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.59 E-value=0.018 Score=49.62 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=60.6
Q ss_pred CCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH--hcCCCCceEEEEEEEecCCCccCCCce
Q 008808 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV--RSLSNESIVDVIGVVSVPDVEIKGATQ 181 (553)
Q Consensus 104 g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~--~~l~~esiV~V~G~v~~~~~~~~~~t~ 181 (553)
-..|||.|-|.+.+.+++.-+|++|+|+...|+|++-... ...+ ..+..|+-|.|.|.+..-+ ..|
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~-------~~~i~~~~l~~G~~V~v~g~~~~y~-----~~G 88 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSR-------ARRIRGFDLKDGDKVLVRGRVSFYE-----PRG 88 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHH-------HhhCCCCCCCCCCEEEEEEEEEEEC-----CCc
Confidence 4789999999999885447899999999999999998752 1112 3689999999999987644 245
Q ss_pred eEEEEEeEEE
Q 008808 182 QVEVQIKKLY 191 (553)
Q Consensus 182 ~~Ei~v~~i~ 191 (553)
++.+.|.+|.
T Consensus 89 ~~sl~v~~i~ 98 (99)
T PF13742_consen 89 SLSLIVEDID 98 (99)
T ss_pred EEEEEEEEeE
Confidence 7899888764
No 110
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.54 E-value=0.0078 Score=65.97 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=34.5
Q ss_pred ceeEEEeceecCCCCCCCCC----cCcccceeEEeccccCHHHHHHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rH----l~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~ 366 (553)
=|+.|+|+|||||-+ + +| .-||||.|.+ .|. +-+++.+.+..++..+.
T Consensus 187 lr~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~-~peq~~~e~~~~l~~~~ 238 (456)
T PRK04173 187 FGIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFV-KPGTDNEWFAYWIELRK 238 (456)
T ss_pred eeeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEE-CcChHHHHHHHHHHHHH
Confidence 489999999999986 4 44 2799999997 465 35666666555554433
No 111
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.04 E-value=0.059 Score=43.84 Aligned_cols=73 Identities=23% Similarity=0.294 Sum_probs=55.3
Q ss_pred EEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEE
Q 008808 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (553)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~ 186 (553)
|+|.|-|.+.+..| .=+|+.|+|+...|.|++-.... ......+..||-|.|.|.+.. ..+.+.|.
T Consensus 1 v~v~GeVs~~~~~~-GHvyfsLkD~~a~i~cv~f~~~~------~~~~~~l~~Gd~V~v~G~v~~-------~~G~~ql~ 66 (73)
T cd04487 1 VHIEGEVVQIKQTS-GPTIFTLRDETGTVWAAAFEEAG------VRAYPEVEVGDIVRVTGEVEP-------RDGQLQIE 66 (73)
T ss_pred CEEEEEEeccccCC-CCEEEEEEcCCEEEEEEEEchhc------cCCcCCCCCCCEEEEEEEEec-------CCeEEEEE
Confidence 58899999764344 34889999999999999886521 111246899999999999874 24579999
Q ss_pred EeEEEEe
Q 008808 187 IKKLYCV 193 (553)
Q Consensus 187 v~~i~~l 193 (553)
+.++.+|
T Consensus 67 v~~i~~~ 73 (73)
T cd04487 67 VESLEVL 73 (73)
T ss_pred EeeEEEC
Confidence 9998875
No 112
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=0.15 Score=54.22 Aligned_cols=108 Identities=13% Similarity=0.225 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeec------cCCCCCccceeecCC-CCceec----ccChhhHhhhcccCCC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIA------GSSEGGSAVFRLDYK-GQSACL----AQSPQLHKQMSICGDF 314 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~------~~~egga~~F~v~~~-~~~~~L----~~SPql~lk~li~~g~ 314 (553)
.-+.+|..|++.|++-|...|..+|+||.+.. ...|..--.+-+..- |.-..| +++=-=|+-|-=+..+
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~si 151 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITSI 151 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecccccHHHHHHHHcccccc
Confidence 44788999999999999999999999998732 122221112222222 222333 3333334433212223
Q ss_pred ceeEEEeceecCCCC-CCCCCcCcccceeEEeccccCHHHHHH
Q 008808 315 GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMD 356 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~-~t~rHl~EFt~lE~e~a~~~~~~~~m~ 356 (553)
+-|.||++||-+.. .|.-..-||.||||-.+. .|.-|+-
T Consensus 152 -kRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG--~~d~M~p 191 (518)
T KOG1936|consen 152 -KRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG--QFDPMIP 191 (518)
T ss_pred -eeeeEEEEEeccCchhhchhhhhhhccCccccc--cCCCCCc
Confidence 45999999998753 244445799999997763 3544443
No 113
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.0081 Score=65.63 Aligned_cols=88 Identities=19% Similarity=0.310 Sum_probs=65.6
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
++.+.+|++ +.|++|.|+|-|..++..+ .-.-+.|+|+++.+++-+....+ + .....+..|+||.|+|.|..
T Consensus 202 r~~i~~id~-~ig~tV~I~GeV~qikqT~-GPTVFtltDetg~i~aAAFe~aG-v-----RAyP~IevGdiV~ViG~V~~ 273 (715)
T COG1107 202 RTLIDDLDE-MIGKTVRIEGEVTQIKQTS-GPTVFTLTDETGAIWAAAFEEAG-V-----RAYPEIEVGDIVEVIGEVTR 273 (715)
T ss_pred cccHHHHHh-hcCceEEEEEEEEEEEEcC-CCEEEEEecCCCceehhhhccCC-c-----ccCCCCCCCceEEEEEEEee
Confidence 345666765 9999999999999999887 44557999999999998876532 1 22357999999999999976
Q ss_pred CCCccCCCceeEEEEEeEEEEee
Q 008808 172 PDVEIKGATQQVEVQIKKLYCVS 194 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~~ls 194 (553)
.. +++-|.+..++.|.
T Consensus 274 r~-------g~lQiE~~~me~L~ 289 (715)
T COG1107 274 RD-------GRLQIEIEAMEKLT 289 (715)
T ss_pred cC-------CcEEEeehhhHHhh
Confidence 53 34555555555544
No 114
>PLN02320 seryl-tRNA synthetase
Probab=95.92 E-value=0.023 Score=62.51 Aligned_cols=116 Identities=18% Similarity=0.262 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCC-C-CCc-------cceeecCCCCceecccChh-----hHhhhccc-CC
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E-GGS-------AVFRLDYKGQSACLAQSPQ-----LHKQMSIC-GD 313 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e-gga-------~~F~v~~~~~~~~L~~SPq-----l~lk~li~-~g 313 (553)
++...+++++++++..+||.||.||.|..... + .|- ..|.+. +.++||.-..| +|....+. ..
T Consensus 234 ~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie--~ed~~Li~TaE~Pl~~~~~~~ils~~d 311 (502)
T PLN02320 234 LLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID--GSDQCLIGTAEIPVGGIHMDSILLESA 311 (502)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEEC--CCceEEeecccccccccccccccCHhh
Confidence 46678899999999999999999999964321 1 111 123332 45677732222 33332221 11
Q ss_pred -CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHH
Q 008808 314 -FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG 368 (553)
Q Consensus 314 -~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~ 368 (553)
-=|++++|+|||.|-+. +.--.-+|++.|... |. .-++..+..++|+..+..-
T Consensus 312 LPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~-~peqs~~e~e~ll~~~e~i 371 (502)
T PLN02320 312 LPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-IC-RPEESESFHEELIQIEEDL 371 (502)
T ss_pred CCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EE-CHHHHHHHHHHHHHHHHHH
Confidence 25899999999999541 111235899999874 54 4678888888877655433
No 115
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.75 E-value=0.062 Score=54.92 Aligned_cols=93 Identities=11% Similarity=0.047 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC--CCCc----ccee-e-cCCCCceecc--cChhhHhhhccc---
Q 008808 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EGGS----AVFR-L-DYKGQSACLA--QSPQLHKQMSIC--- 311 (553)
Q Consensus 245 ~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--egga----~~F~-v-~~~~~~~~L~--~SPql~lk~li~--- 311 (553)
+.-+..+..|.+.+++.|...||-||+||++--... ..+. ..|. + +.-|+.+-|| ..|++.. +++
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR--~~a~~~ 81 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLR--YYSMYP 81 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHH--HHHhcC
Confidence 344556778888999999999999999999943221 1111 1222 2 2246778887 4455544 222
Q ss_pred CCCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 312 ~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
.+..|.|.+|+|||++. +|+|+.+|.--
T Consensus 82 ~~~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG 109 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE--------AAVQVGIENYA 109 (272)
T ss_pred CCCceEEEeccEeccCC--------CcceeceEEEC
Confidence 24569999999999874 38898888753
No 116
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=95.58 E-value=0.069 Score=58.60 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhH-hCCcEEEecceeeccC---CCCCcc-----ceeecCC------------------------
Q 008808 246 GIFRIQSQVGNIFRQFLL-SENFVEIHTPKLIAGS---SEGGSA-----VFRLDYK------------------------ 292 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~~~---~egga~-----~F~v~~~------------------------ 292 (553)
...++...+.+++++++. +.||.||-+|.|+... ..|... .|.|...
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 345677888899977665 5599999999997542 112111 3334211
Q ss_pred -----C-CceecccChhhHhhhccc------CC-CceeEEE-eceecCCCC--CCCCCcCcccceeEEeccccCHHHHHH
Q 008808 293 -----G-QSACLAQSPQLHKQMSIC------GD-FGRVFET-GPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMD 356 (553)
Q Consensus 293 -----~-~~~~L~~SPql~lk~li~------~g-~~rVfeI-g~~FR~E~~--~t~rHl~EFt~lE~e~a~~~~~~~~m~ 356 (553)
. ..++|+-+.+..+=.+.. .+ --|+|++ ++|||.|.. ++..-+-||+|.|.-. +. +.++..+
T Consensus 301 L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~-tpEea~e 378 (520)
T TIGR00415 301 LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IA-EPEETEE 378 (520)
T ss_pred ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-Ee-CHHHHHH
Confidence 1 156677776655432222 22 2488994 479999973 3333456999999876 55 6788888
Q ss_pred HHHHHHH
Q 008808 357 IVDRLFV 363 (553)
Q Consensus 357 ~~e~ll~ 363 (553)
..++++.
T Consensus 379 ~~e~mle 385 (520)
T TIGR00415 379 IRDKTLE 385 (520)
T ss_pred HHHHHHH
Confidence 8888775
No 117
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=95.43 E-value=0.13 Score=41.50 Aligned_cols=72 Identities=17% Similarity=0.333 Sum_probs=50.5
Q ss_pred EEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEE
Q 008808 109 IRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (553)
Q Consensus 109 v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~E 184 (553)
+.|.|.+++ ..|++++|+.|.|+++.+.+++... ...+....+..|..|.|.|.+..-. +..+
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~~~~~~f~~------~~~~~~~~l~~g~~v~v~G~v~~~~-------~~~~ 68 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPE------TYEKYRDLLKEDALLLVEGKVERRD-------GGLR 68 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCeEEEEECHH------HHHHHHHHhcCCCEEEEEEEEEecC-------CceE
Confidence 445554432 3465689999999999999999853 1223456799999999999997532 2477
Q ss_pred EEEeEEEEe
Q 008808 185 VQIKKLYCV 193 (553)
Q Consensus 185 i~v~~i~~l 193 (553)
+.+.++..+
T Consensus 69 l~~~~i~~~ 77 (84)
T cd04485 69 LIAERIEDL 77 (84)
T ss_pred EEeeccccH
Confidence 777766544
No 118
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=95.38 E-value=0.084 Score=57.70 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=63.7
Q ss_pred EeccccCCCCCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.+.+|.....|+.|+|.|.|.++| ..|..++|++|.|.++.+.+++..+ ...++...|..+.+|.|+|.|
T Consensus 270 ~~~~l~~~~~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~------~y~~~~~~l~~~~~v~v~G~v 343 (449)
T PRK07373 270 NLSELEEQKEKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPK------SYERISELLQVDARLIIWGKV 343 (449)
T ss_pred CHHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEE
Confidence 344443334688999999999986 3466799999999999999999865 233455679999999999999
Q ss_pred ecCCCccCCCceeEEEEEeEEE
Q 008808 170 SVPDVEIKGATQQVEVQIKKLY 191 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~ 191 (553)
...+ +.+.|.+.+|.
T Consensus 344 ~~~~-------~~~~liv~~i~ 358 (449)
T PRK07373 344 DRRD-------DQVQLIVEDAE 358 (449)
T ss_pred EecC-------CeEEEEEeEee
Confidence 6432 24566676664
No 119
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=95.34 E-value=0.17 Score=42.78 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=56.7
Q ss_pred EEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEE
Q 008808 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (553)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~ 186 (553)
|++-|+|.++...+.++. +.|.|+++.|-|.+-......+ ..-...+..|++|.|.|.+..-. ++..|.
T Consensus 2 v~~vG~V~~~~~~~~~~~-~tL~D~TG~I~~~~W~~~~~~~---~~~~~~~~~g~~v~v~G~v~~~~-------g~~ql~ 70 (95)
T cd04478 2 VTLVGVVRNVEEQSTNIT-YTIDDGTGTIEVRQWLDDDNDD---SSEVEPIEEGTYVRVFGNLKSFQ-------GKKSIM 70 (95)
T ss_pred EEEEEEEEeeeEcccEEE-EEEECCCCcEEEEEeCCCCCcc---cccccccccCCEEEEEEEEcccC-------CeeEEE
Confidence 789999999998885655 7999999999999876432100 01135699999999999996432 356777
Q ss_pred EeEEEEee
Q 008808 187 IKKLYCVS 194 (553)
Q Consensus 187 v~~i~~ls 194 (553)
+..+..+.
T Consensus 71 i~~i~~v~ 78 (95)
T cd04478 71 AFSIRPVT 78 (95)
T ss_pred EEEEEEeC
Confidence 77777654
No 120
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=95.27 E-value=0.25 Score=38.31 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=50.9
Q ss_pred EEEEEeeeccCC--CceEEEEEEeCC-eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 109 IRGRVHTTRPVG--NKLAFVVVRERV-STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 109 v~GrV~~~R~~G--~kl~Fl~Lrd~~-~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
|.|.|.+++... ++++++.|.|.+ +.+.|++..+. ...+...+..|++|.|.|.+.... ++..+
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~~------~~~~~~~~~~g~~v~v~g~v~~~~-------~~~~l 68 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGEL------AEELENLLKEGQVVYIKGKVKKFR-------GRLQL 68 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEchH------HHHHHhhccCCCEEEEEEEEEecC-------CeEEE
Confidence 678888886553 578999999999 99999998652 223446799999999999996431 24566
Q ss_pred EEeEE
Q 008808 186 QIKKL 190 (553)
Q Consensus 186 ~v~~i 190 (553)
.+.++
T Consensus 69 ~~~~~ 73 (75)
T cd03524 69 IVESI 73 (75)
T ss_pred Eeeee
Confidence 65543
No 121
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.19 E-value=0.049 Score=59.99 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC-------CCC-CccceeecC-CCCceecccChhhHhhhcccC-----
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG-GSAVFRLDY-KGQSACLAQSPQLHKQMSICG----- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-------~eg-ga~~F~v~~-~~~~~~L~~SPql~lk~li~~----- 312 (553)
-++++.+|.+.||+-|++-|..||--|+|+++. .++ |.+.|.+.. -+.++.|+-..|--.--++..
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SY 125 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSY 125 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhh
Confidence 367889999999999999999999999998732 122 335676654 468888886665332222211
Q ss_pred -C-CceeEEEeceecCCCC--CCCCCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~~--~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
+ -=++|||..+||+|-- ..---.-||+|=|.|-... +++++....+.++.
T Consensus 126 kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~-~~e~a~~~y~~~~~ 179 (500)
T COG0442 126 KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHA-DEEDAEETYEKMLD 179 (500)
T ss_pred hhCCcceeeeeeEEeccccCCCCccchheeeecccccccC-CHHHHHHHHHHHHH
Confidence 1 2489999999999962 1111357999999997665 78998888877764
No 122
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=95.13 E-value=0.17 Score=43.85 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=57.8
Q ss_pred eccccCCCCCCEEEEEEEEeee---c---c---CCCceEEEEEEeC-CeEEEEEeecCCCCcchHHHHHHhcCCCCceEE
Q 008808 95 VGALNGSLKDQEVLIRGRVHTT---R---P---VGNKLAFVVVRER-VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (553)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~---R---~---~G~kl~Fl~Lrd~-~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (553)
|++|.+.. ..++|+|||.++ | . .| ++.-++|+|. ++.|+|.+-.. ...+|...|..|+++.
T Consensus 2 I~~L~p~~--~~~~I~~rV~~k~~~~~f~~~~~~g-~~~~~~l~De~~~~I~~t~~~~------~~~~f~~~l~eG~vy~ 72 (104)
T cd04474 2 ISSLNPYQ--NKWTIKARVTNKSDIRTWSNARGEG-KLFSFDLLDEDGGEIRATFFND------AVDKFYDLLEVGKVYY 72 (104)
T ss_pred hhHccCCC--CcEEEEEEEeeccccccccCCCCCc-EEEEEEEEECCCCEEEEEEehH------HHHHhhcccccccEEE
Confidence 34454333 358899999742 3 2 25 8888999999 89999999864 2345778899999999
Q ss_pred EEEEEecCCCc-cCCCceeEEEEEeE
Q 008808 165 VIGVVSVPDVE-IKGATQQVEVQIKK 189 (553)
Q Consensus 165 V~G~v~~~~~~-~~~~t~~~Ei~v~~ 189 (553)
|.+--+++..+ -+......||...+
T Consensus 73 i~~~~V~~a~~~y~~~~~~yeI~f~~ 98 (104)
T cd04474 73 ISKGSVKVANKKFNTLKNDYEITFNR 98 (104)
T ss_pred EeccEEeeccccCCCCCCcEEEEECC
Confidence 99855444322 22222348887653
No 123
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=94.97 E-value=0.17 Score=42.98 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=54.7
Q ss_pred EEEEEEEeeecc--CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEE
Q 008808 107 VLIRGRVHTTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (553)
Q Consensus 107 V~v~GrV~~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~E 184 (553)
++|.|.|.+.+. .| .=+|+.|.|+++.|.|++-.... .+......|..||-|.|.|.+..-. .
T Consensus 1 ~~v~GeVs~~~~~~~s-GH~yFtlkD~~~~i~cv~f~~~g----~~~~~~~~l~~Gd~V~v~G~v~~y~----------q 65 (91)
T cd04482 1 YRVTGKVVEEPRTIEG-GHVFFKISDGTGEIDCAAYEPTK----EFRDVVRLLIPGDEVTVYGSVRPGT----------T 65 (91)
T ss_pred CEEEEEEeCCeecCCC-CCEEEEEECCCcEEEEEEECccc----ccccccCCCCCCCEEEEEEEEecCC----------E
Confidence 479999998754 34 34789999999999999886531 1112345699999999999986421 5
Q ss_pred EEEeEEEEeecC
Q 008808 185 VQIKKLYCVSRA 196 (553)
Q Consensus 185 i~v~~i~~ls~~ 196 (553)
|.++++.+++..
T Consensus 66 l~ve~l~~~glg 77 (91)
T cd04482 66 LNLEKLRVIRLA 77 (91)
T ss_pred EEEEEEEECCCc
Confidence 788888876653
No 124
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=94.48 E-value=0.88 Score=36.80 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=47.6
Q ss_pred cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEee
Q 008808 118 PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVS 194 (553)
Q Consensus 118 ~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls 194 (553)
..|++++++.|.|+++.+.+++..... .....+..|.+|.|.|.+..-. +..++.+.++..+.
T Consensus 15 k~g~~~~~~~l~D~tg~i~~~~f~~~~-------~~~~~l~~g~~v~v~G~v~~~~-------~~~~l~~~~i~~l~ 77 (83)
T cd04492 15 KNGKPYLALTLQDKTGEIEAKLWDASE-------EDEEKFKPGDIVHVKGRVEEYR-------GRLQLKIQRIRLVT 77 (83)
T ss_pred cCCCcEEEEEEEcCCCeEEEEEcCCCh-------hhHhhCCCCCEEEEEEEEEEeC-------CceeEEEEEEEECC
Confidence 346579999999999999999986421 2246799999999999996421 24788888877554
No 125
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.068 Score=58.33 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhHh--CCcEEEecceeec
Q 008808 249 RIQSQVGNIFRQFLLS--ENFVEIHTPKLIA 277 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~--~gF~EV~TP~l~~ 277 (553)
.++..|++..|++|.. .+++||+||+|..
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 4688899999999975 6899999999864
No 126
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=94.30 E-value=0.29 Score=42.54 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=52.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEEEEEec
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSV 171 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~ 171 (553)
+.+.++.....+..|+|.|+|.+.-..- + |.++|.++.|+|-++.+. |. ..+..++-|.|.|.|-+
T Consensus 23 ~TV~~a~~~~Dd~~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~~---------w~g~~vt~~~~Vri~GeVDk 89 (103)
T PF04076_consen 23 TTVAQAKNAKDDTPVTLEGNIVKQLGDD-K---YLFRDATGEIEVEIDDDV---------WRGQTVTPDDKVRISGEVDK 89 (103)
T ss_dssp --HHHHTTS-SSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEE--GGG---------STT----TTSEEEEEEEEEE
T ss_pred EeHHHHhhCcCCCeEEEEEEEEEEecCC-E---EEEECCCCcEEEEEChhh---------cCCcccCCCCEEEEEEEEeC
Confidence 3444555568899999999988765433 3 789999999999988752 22 35899999999999975
Q ss_pred CCCccCCCceeEEEEEeEEE
Q 008808 172 PDVEIKGATQQVEVQIKKLY 191 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~ 191 (553)
.. ...||.|..|+
T Consensus 90 ~~-------~~~~IdV~~I~ 102 (103)
T PF04076_consen 90 DW-------NKTEIDVDRIE 102 (103)
T ss_dssp ET-------TEEEEEEEEEE
T ss_pred CC-------CceEEEEEEEE
Confidence 43 14677777663
No 127
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=94.25 E-value=0.52 Score=40.05 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=51.8
Q ss_pred EEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcc-------------hHH-HHHHhcCCCCceEEEEEEEecCCC
Q 008808 109 IRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS-------------KEM-VRFVRSLSNESIVDVIGVVSVPDV 174 (553)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~-------------~~~-~~~~~~l~~esiV~V~G~v~~~~~ 174 (553)
|-|+|.+++... .-.-+.|.|+++.|-|++=......+ ..| .+....+..|++|.|.|.+..-.
T Consensus 2 ivG~V~sv~~~~-~~~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~fr- 79 (92)
T cd04483 2 ILGTVVSRRERE-TFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTYR- 79 (92)
T ss_pred eEEEEEEEEecC-CeEEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEeccC-
Confidence 679999998887 44557999999999999876432100 001 02345699999999999997532
Q ss_pred ccCCCceeEEEEEeEEE
Q 008808 175 EIKGATQQVEVQIKKLY 191 (553)
Q Consensus 175 ~~~~~t~~~Ei~v~~i~ 191 (553)
++..|.++.++
T Consensus 80 ------g~~ql~i~~~~ 90 (92)
T cd04483 80 ------GEREINASVVY 90 (92)
T ss_pred ------CeeEEEEEEEE
Confidence 24566666654
No 128
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=94.09 E-value=0.78 Score=50.57 Aligned_cols=36 Identities=28% Similarity=0.606 Sum_probs=27.7
Q ss_pred cCCC-CcceeeecHHHHHHHHcCCCCcccc--ccccCCC
Q 008808 513 YGAP-PHGGFGVGLERVVMLFCGLNNIRKT--SLYPRDP 548 (553)
Q Consensus 513 ~G~p-P~~G~GiGidRLvm~l~g~~nIrdv--~~FPr~p 548 (553)
||++ |...++|++|||+|...+.++||.. -.||+.|
T Consensus 312 fDI~~pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFP 350 (529)
T PRK06253 312 YGIDVPVMNLGLGVERLAMILYGAEDVREMVYPQFYEWE 350 (529)
T ss_pred cCCCCceEEEEEeHHHHHhhhcCcccccccCcCCCCCCC
Confidence 4554 5689999999999999998899984 3455555
No 129
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.98 E-value=0.16 Score=52.87 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C----CCCccceeecC-CCCceecccChhhHhhhcccCCC----
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S----EGGSAVFRLDY-KGQSACLAQSPQLHKQMSICGDF---- 314 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~----egga~~F~v~~-~~~~~~L~~SPql~lk~li~~g~---- 314 (553)
.|...++++.++.-|.+-|=.+|.-|+|.+.. + .-|.+.|.+.. .|+.++|...-|=-.-.+|+.-.
T Consensus 52 ~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~iT~lmat~~~lsy 131 (457)
T KOG2324|consen 52 LRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDITALMATYIPLSY 131 (457)
T ss_pred HHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCCCEeccCCchHHHHHHHHHhcCcccc
Confidence 46678899999999999999999999996532 1 12566787743 67788886544433333333222
Q ss_pred ----ceeEEEeceecCCCC-C-CCCCcCcccceeEEeccccCHHHHHHH
Q 008808 315 ----GRVFETGPVFRAEDS-Y-THRHLCEFTGLDVEMEIKKHYSEVMDI 357 (553)
Q Consensus 315 ----~rVfeIg~~FR~E~~-~-t~rHl~EFt~lE~e~a~~~~~~~~m~~ 357 (553)
=|||+||+-||+|-- + +.----||.|=|+| +|..|-+..|+.
T Consensus 132 kqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmY-sFd~~~etA~qT 179 (457)
T KOG2324|consen 132 KQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMY-SFDSDEETAQQT 179 (457)
T ss_pred ccCcEEeeeechhhhhccCccccchhhHHHHHhhhh-cccCCHHHHHHH
Confidence 389999999999941 0 11123699999999 577665555553
No 130
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=93.48 E-value=0.33 Score=54.65 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=67.3
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCC--C----CCc-cceee-cCC-CCceecccC--hhhHhhhccc-CC--CceeE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS--E----GGS-AVFRL-DYK-GQSACLAQS--PQLHKQMSIC-GD--FGRVF 318 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e----gga-~~F~v-~~~-~~~~~L~~S--Pql~lk~li~-~g--~~rVf 318 (553)
++.+.+|++|...||.|+-|..+++..- + ... ....+ |-. ....+||.| |.|..-..-- -+ --|+|
T Consensus 363 ~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~lF 442 (552)
T PRK09616 363 KLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKIF 442 (552)
T ss_pred HHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeEE
Confidence 4466689999999999999999975411 0 001 12222 222 233567765 4443221100 11 13899
Q ss_pred EEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHH
Q 008808 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFV 363 (553)
Q Consensus 319 eIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~ 363 (553)
|||+||+++.. +..|..|++++-+-++-. .++.++..+++.++.
T Consensus 443 EiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~ 487 (552)
T PRK09616 443 EIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLR 487 (552)
T ss_pred EeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999998753 345778999998766531 257777777776664
No 131
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=93.46 E-value=0.33 Score=58.99 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=63.3
Q ss_pred eccccCCCCCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEe
Q 008808 95 VGALNGSLKDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (553)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~ 170 (553)
+.+|.....|+.|+|.|.|.++| .+|..++|++|.|.++.+.+++..+ ...++...|..+.+|.|+|.|.
T Consensus 991 ~~~l~~~~~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~------~y~~~~~~l~~~~~~~v~g~v~ 1064 (1170)
T PRK07374 991 LSSLEEQPDKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPK------SYERLSDHLMTDTRLLVWAKVD 1064 (1170)
T ss_pred HHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEE
Confidence 44443334688999999999985 3466799999999999999999865 2344556799999999999996
Q ss_pred cCCCccCCCceeEEEEEeEEEE
Q 008808 171 VPDVEIKGATQQVEVQIKKLYC 192 (553)
Q Consensus 171 ~~~~~~~~~t~~~Ei~v~~i~~ 192 (553)
..+ +.+.|.+.++.-
T Consensus 1065 ~~~-------~~~~~~~~~i~~ 1079 (1170)
T PRK07374 1065 RRD-------DRVQLIIDDCRE 1079 (1170)
T ss_pred ecC-------CeEEEEEeeeec
Confidence 532 245666666643
No 132
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.24 E-value=0.15 Score=57.26 Aligned_cols=116 Identities=21% Similarity=0.153 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeecc---CCCCCcc-----ceeecCCCCceecccChh-----hHhhhcccC--C
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAG---SSEGGSA-----VFRLDYKGQSACLAQSPQ-----LHKQMSICG--D 313 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~---~~egga~-----~F~v~~~~~~~~L~~SPq-----l~lk~li~~--g 313 (553)
.+|..+.+++|.-....||.||.||.|... ...|+.. .|.+..-++.+.|+.--- .|++.+-+- -
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~L 300 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYREL 300 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceecc
Confidence 578889999999999999999999998532 2233222 222222223333332221 333332211 1
Q ss_pred CceeEEEeceecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~ 366 (553)
.-|++|+|.|||+|.|. +.+-+-+|||=|.-. |. ..+.+.+.+.+.+..+.
T Consensus 301 P~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc-~~dQi~~E~~~~~~~i~ 354 (589)
T COG0441 301 PLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FC-TPDQIKDEFKGILELIL 354 (589)
T ss_pred chhhhhcceeecccCcchhhccccccceeecccce-ec-cHHHHHHHHHHHHHHHH
Confidence 24899999999999862 334567899998753 33 24566666655555443
No 133
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=93.24 E-value=1.4 Score=36.36 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=44.8
Q ss_pred EEEEEEEeeec--cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHH--HHHhcCCCCceEEEEEEEec
Q 008808 107 VLIRGRVHTTR--PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV--RFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 107 V~v~GrV~~~R--~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~--~~~~~l~~esiV~V~G~v~~ 171 (553)
|.++|-|.++| ..| +- |+.|-|.++++.+++..+. .. ++...|..+.+|.|+|.+..
T Consensus 2 v~i~GiI~~v~~TK~g-~~-~~~leD~~G~~Ev~~F~~~------~~~~~~~~~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNG-HR-IVELEDTTGRITVLLTKDK------EELFEEAEDILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCC-CE-EEEEECCCCEEEEEEeCch------hhhhhhhhhccCCCEEEEEEEEec
Confidence 57788888876 234 34 9999999999999999763 23 45567999999999999943
No 134
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=93.19 E-value=0.079 Score=59.10 Aligned_cols=31 Identities=26% Similarity=0.566 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhH-hCCcEEEecceeecc
Q 008808 248 FRIQSQVGNIFRQFLL-SENFVEIHTPKLIAG 278 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~~ 278 (553)
..++..|.+..|++|. ..|++||+||+|.+.
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~ 68 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITPE 68 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCCH
Confidence 4678899999999995 789999999998743
No 135
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.18 E-value=0.35 Score=52.21 Aligned_cols=114 Identities=16% Similarity=0.265 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC-CC-C------ccceeecCCCCceecccChhhHhhh-----ccc-C
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-G------SAVFRLDYKGQSACLAQSPQLHKQM-----SIC-G 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-eg-g------a~~F~v~~~~~~~~L~~SPql~lk~-----li~-~ 312 (553)
+-++--++++++=++..++||.||.+|.|+...+ .| | -..|++. +..+||.-.-|.-+-- .+- .
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~--~~~~~LipTaEvpl~~l~~~Eil~~~ 250 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVE--DPDLYLIPTAEVPLTNLHRDEILDEE 250 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEec--CCCEEEEecchhhhHHhhcccccccc
Confidence 3445566788888888899999999999974321 11 1 1134443 2367876555543322 222 2
Q ss_pred C-CceeEEEeceecCCCCC---CCC---CcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSY---THR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~---t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
. --+++-.++|||.|-.. +.| -..+|..+|.-. |. .-++-.+..|+|+..
T Consensus 251 ~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~-~Pe~S~~~~E~m~~~ 307 (429)
T COG0172 251 DLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-IT-KPEESEEELEEMLGN 307 (429)
T ss_pred cCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-Ee-CcchhHHHHHHHHHH
Confidence 2 35778889999999532 111 234899999853 44 467777777777654
No 136
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=92.91 E-value=0.39 Score=58.31 Aligned_cols=87 Identities=21% Similarity=0.309 Sum_probs=64.9
Q ss_pred EeccccCCCCCCEEEEEEEEeeecc----CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.+.+|.....|+.|.+.|-|.++|. .|+.++|+.|.|.++.+.+++..+ ...++...|..|++|.|+|.|
T Consensus 967 ~~~~l~~~~~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~------~ye~~~~~L~~g~iV~V~GkV 1040 (1135)
T PRK05673 967 RLADLEPTEGGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSE------ALEKYRDLLEEDRIVVVKGQV 1040 (1135)
T ss_pred CHHHHhccccCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEE
Confidence 3444433345889999999999853 365799999999999999999864 234556779999999999999
Q ss_pred ecCCCccCCCceeEEEEEeEEEEe
Q 008808 170 SVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
.... +.+.|.+.++.-+
T Consensus 1041 e~~~-------~~~qlii~~I~~L 1057 (1135)
T PRK05673 1041 SFDD-------GGLRLTAREVMDL 1057 (1135)
T ss_pred EecC-------CeEEEEEeecccH
Confidence 6532 2467777766544
No 137
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=92.72 E-value=0.77 Score=41.36 Aligned_cols=79 Identities=13% Similarity=0.247 Sum_probs=58.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHh-cCCCCceEEEEEEEec
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVIGVVSV 171 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~-~l~~esiV~V~G~v~~ 171 (553)
+.+.+.....++..|.+.|.|...-..- + |.+||++++|+|-++.+ .|.. .+.++|-|.|.|.|-+
T Consensus 46 ~tV~~a~~~~Ddt~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~---------~w~G~~v~p~d~V~I~GeVDk 112 (126)
T TIGR00156 46 MTVDFAKSMHDGASVTLRGNIISHIGDD-R---YVFRDKSGEINVVIPAA---------VWNGREVQPKDMVNISGSLDK 112 (126)
T ss_pred EeHHHHhhCCCCCEEEEEEEEEEEeCCc-e---EEEECCCCCEEEEECHH---------HcCCCcCCCCCEEEEEEEECC
Confidence 4555555568899999999998765443 2 79999999999998764 3443 5899999999999974
Q ss_pred CCCccCCCceeEEEEEeEEE
Q 008808 172 PDVEIKGATQQVEVQIKKLY 191 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~ 191 (553)
.- ...||-|.+|+
T Consensus 113 ~~-------~~~~IdV~~I~ 125 (126)
T TIGR00156 113 KS-------APAEVDVTHIQ 125 (126)
T ss_pred CC-------CCeEEEEEEEE
Confidence 32 13577776664
No 138
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=92.70 E-value=0.39 Score=48.63 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=52.7
Q ss_pred CEEEEEEEEeeeccC----CCceEEEEEEeCCe--EEEEEeecCCCC-cchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 105 QEVLIRGRVHTTRPV----GNKLAFVVVRERVS--TVQCLATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~----G~kl~Fl~Lrd~~~--~iQvv~~~~~~~-~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
+.|.|.|.|..+.-. . +-+|+.|-|+++ .|.|++...... .+. . ...+ .|++|.|.|++..
T Consensus 67 ~~v~i~G~Vv~~~~~~~~~~-~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l---~-~~~~-~G~~V~VkG~vsr------ 134 (256)
T PF10451_consen 67 RWVRIVGVVVGIDYKWIENE-DRIILTIDDSSGANTIECKCSKSSYLSMGL---P-INDL-IGKVVEVKGTVSR------ 134 (256)
T ss_dssp -EEEEEEEEEEEEEEE-BBT-CEEEEEEE-SSCS-EEEEEEEHHHHHCCCH---H-CTT--TT-EEEEEEEEES------
T ss_pred EEEEEEEEEEEEEEEeeccc-ceEEEEEeCCCCceeEEEEEEcccccccCC---C-ccCC-CCcEEEEEEEEcc------
Confidence 568999999998754 4 678999999999 899999865210 111 1 2345 9999999999982
Q ss_pred CCceeEEEEEeEEEEee
Q 008808 178 GATQQVEVQIKKLYCVS 194 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~ls 194 (553)
+..+|.++.+..+.
T Consensus 135 ---~~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 135 ---NERQLDVERIELVR 148 (256)
T ss_dssp ---SSEEEEEEEEEEET
T ss_pred ---CcEEEEEEEEEccC
Confidence 24688888888764
No 139
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=92.39 E-value=0.72 Score=56.09 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=61.3
Q ss_pred CCCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 102 LKDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
..|..|+|.|.|.++| ..|..++|+.|.|.++.+.+++..+ ...++...|..+.+|.|+|.|....
T Consensus 989 ~~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~------~~~~~~~~l~~~~~~~v~g~v~~~~---- 1058 (1151)
T PRK06826 989 KDGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPK------VYEKYRSLLNEDNIVLIKGRVSLRE---- 1058 (1151)
T ss_pred cCCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEecC----
Confidence 3578999999999986 3465699999999999999999864 2345566799999999999996422
Q ss_pred CCceeEEEEEeEEEEe
Q 008808 178 GATQQVEVQIKKLYCV 193 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~l 193 (553)
.+.+.+.+.++.-+
T Consensus 1059 --~~~~~~~~~~~~~l 1072 (1151)
T PRK06826 1059 --DEEPKLICEEIEPL 1072 (1151)
T ss_pred --CCceEEEEeeeecH
Confidence 12366777766544
No 140
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=92.17 E-value=0.71 Score=55.81 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=63.5
Q ss_pred EeccccCCCCCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.+.+|. ...|+.|+|.|.|.++| ..|++++|++|-|.++.+.+++..+ ...++...|..+.+|.|+|.|
T Consensus 934 ~~~~l~-~~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~------~y~~~~~~l~~~~~~~v~G~v 1006 (1107)
T PRK06920 934 SLAQAM-RHKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPE------TYIHFSDKLQEGAIVLVDGTI 1006 (1107)
T ss_pred CHHHHh-hcCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEE
Confidence 344443 24578999999999985 3466799999999999999999865 233456679999999999999
Q ss_pred ecCCCccCCCceeEEEEEeEEEEe
Q 008808 170 SVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
.... +...|.+.++.-+
T Consensus 1007 ~~~~-------~~~~~~~~~i~~l 1023 (1107)
T PRK06920 1007 ELRN-------HKLQWIVNGLYPL 1023 (1107)
T ss_pred EecC-------CcEEEEEeecccH
Confidence 6432 2356666666433
No 141
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=92.13 E-value=1.4 Score=38.00 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=41.8
Q ss_pred CCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
...|+.|++-|+|.+.+... +.+.. +++.++|.++... .+..+-+|+|.|+|..
T Consensus 12 ~f~gk~V~ivGkV~~~~~~~-----~~~~~~Dg~~v~v~l~~~~------------~~~~~~~vEViG~V~~ 66 (101)
T cd04479 12 QFVGKTVRIVGKVEKVDGDS-----LTLISSDGVNVTVELNRPL------------DLPISGYVEVIGKVSP 66 (101)
T ss_pred hhCCCEEEEEEEEEEecCCe-----EEEEcCCCCEEEEEeCCCC------------CcccCCEEEEEEEECC
Confidence 58899999999999998653 45554 4469999988642 3566789999999863
No 142
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=91.65 E-value=0.66 Score=55.93 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=64.2
Q ss_pred cccCCCCCCEEEEEEEEeeeccC--CCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC
Q 008808 97 ALNGSLKDQEVLIRGRVHTTRPV--GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (553)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~R~~--G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~ 174 (553)
+|.....|..|+|+|.|..++.. .+.++|+.|-|.++.+.+++..+ ...++...|..|.++.|+|.|....
T Consensus 946 ~l~~~~~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~------~~~~~~~~l~~~~~~~v~g~v~~~~- 1018 (1046)
T PRK05672 946 ELLDVEDGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPG------LWERQRREALGARLLLVRGRVQNAE- 1018 (1046)
T ss_pred HHhhccCCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEEecC-
Confidence 44433468899999999988654 22399999999999999999865 2334556799999999999997532
Q ss_pred ccCCCceeEEEEEeEEEEeec
Q 008808 175 EIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 175 ~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
+.+.|.+.++.-+..
T Consensus 1019 ------~~~~~~~~~i~~~~~ 1033 (1046)
T PRK05672 1019 ------GVRHLVADRLEDLSP 1033 (1046)
T ss_pred ------CeEEEEEeeeechHH
Confidence 246777877765543
No 143
>PRK10053 hypothetical protein; Provisional
Probab=91.62 E-value=1.2 Score=40.25 Aligned_cols=79 Identities=13% Similarity=0.243 Sum_probs=58.5
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHh-cCCCCceEEEEEEEec
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVIGVVSV 171 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~-~l~~esiV~V~G~v~~ 171 (553)
..+.+.....++..|.|.|.|...=..- + |.+||+++.|+|-++.+ .|.. .+.+++-|.|.|.|-+
T Consensus 50 ~tV~~a~~~~Dd~~V~L~G~Iv~~lg~d-~---Y~F~D~tG~I~VeID~~---------~w~G~~v~p~~kV~I~GevDk 116 (130)
T PRK10053 50 MTVEQAKTMHDGATVSLRGNLIDHKGDD-R---YVFRDKSGEINVIIPAA---------VFDGREVQPDQMININGSLDK 116 (130)
T ss_pred EEHHHhhcCcCCCeEEEEEEEEEEeCCc-e---EEEECCCCcEEEEeCHH---------HcCCCcCCCCCEEEEEEEECC
Confidence 3555555568899999999997653322 2 78999999999998865 3443 5999999999999965
Q ss_pred CCCccCCCceeEEEEEeEEE
Q 008808 172 PDVEIKGATQQVEVQIKKLY 191 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~ 191 (553)
.- ...||-|..|+
T Consensus 117 ~~-------~~~~IdV~~i~ 129 (130)
T PRK10053 117 KS-------APPVVRVTHLQ 129 (130)
T ss_pred CC-------CCeEEEEEEEe
Confidence 32 13677777664
No 144
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=91.54 E-value=1.2 Score=39.56 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=59.7
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEEEEEe
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVS 170 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~ 170 (553)
-..+.+-...+.+..|+++|-|..--..- . +++||.+++|++-++.+. |. ..+.+.|-|.|.|.|-
T Consensus 45 ~~TV~~Ak~~~Dda~V~l~GnIv~qi~~D---~-y~FrD~sGeI~VeIdd~~---------w~g~tv~P~dkV~I~GevD 111 (128)
T COG3111 45 VTTVDQAKTLHDDAWVSLEGNIVRQIGDD---R-YVFRDASGEINVDIDDKV---------WNGQTVTPKDKVRIQGEVD 111 (128)
T ss_pred eeEHHHhhccccCCeEEEEeeEEEeeCCc---e-EEEEcCCccEEEEecccc---------cCCcccCcccEEEEEeEEc
Confidence 34555444567899999999986543332 2 789999999999998762 33 3599999999999986
Q ss_pred cCCCccCCCceeEEEEEeEEEEe
Q 008808 171 VPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 171 ~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
+-- ...||.|..|+.+
T Consensus 112 k~~-------~~~eIdV~~I~k~ 127 (128)
T COG3111 112 KDW-------NSVEIDVKHIEKL 127 (128)
T ss_pred CCC-------ccceeEhhheEec
Confidence 542 1468888777654
No 145
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=90.70 E-value=1.2 Score=53.37 Aligned_cols=76 Identities=14% Similarity=0.281 Sum_probs=58.1
Q ss_pred CCCEEEEEEEEeeec----c-CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 103 KDQEVLIRGRVHTTR----P-VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 103 ~g~~V~v~GrV~~~R----~-~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
.|..+.+.|+|.++| . .|+.++|++|-|.++.+.+++..+ ...++...|..+.+|.|+|.|....
T Consensus 883 ~~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~------~y~~~~~~l~~~~~~~v~G~v~~~~---- 952 (1034)
T PRK07279 883 KNSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPE------TYRQYKDELKEGKFYYLKGKIQERD---- 952 (1034)
T ss_pred cCCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEecC----
Confidence 367788999998764 2 577899999999999999999865 2345567799999999999996532
Q ss_pred CCceeEEEEEeEEE
Q 008808 178 GATQQVEVQIKKLY 191 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~ 191 (553)
+.+.|.+.++.
T Consensus 953 ---~~~~l~~~~i~ 963 (1034)
T PRK07279 953 ---GRLQMVLQQIQ 963 (1034)
T ss_pred ---CeeEEEEeeee
Confidence 24566666653
No 146
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.40 E-value=2.2 Score=48.63 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=71.3
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee---c------cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCc
Q 008808 91 EWTVVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (553)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (553)
.++.|.+|++.. + ..+|+|||.++ | ..| |+.-++|.|+++.|++.+... ...+|...|..|+
T Consensus 179 ~~~pI~~L~py~-~-~wtIkaRV~~Ks~ir~~~~~~geg-kvfsv~L~Degg~Irat~f~~------~~dkf~~~l~eG~ 249 (608)
T TIGR00617 179 RVMPIASLSPYQ-N-KWTIKARVTNKSEIRTWSNARGEG-KLFNVELLDESGEIRATAFNE------QADKFYDIIQEGK 249 (608)
T ss_pred ceEEHHHCCCCC-C-ceEEEEEEEeccccceecCCCCCc-eeeEEEEecCCCeEEEEECch------HHHHHhhhcccCC
Confidence 578899998643 3 48999999753 3 236 788899999999999999864 2346778899999
Q ss_pred eEEEEE-EEecCCCccCCCceeEEEEEeEEEEeecCCC
Q 008808 162 IVDVIG-VVSVPDVEIKGATQQVEVQIKKLYCVSRAAK 198 (553)
Q Consensus 162 iV~V~G-~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~ 198 (553)
++.|.+ .|....+.-+.....+||...+-..+.+|..
T Consensus 250 VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~d 287 (608)
T TIGR00617 250 VYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEECED 287 (608)
T ss_pred EEEECceEEEEccccccCCCCCEEEEECCCeEEEECCC
Confidence 999965 5544333222333459999988777777743
No 147
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=89.52 E-value=1.2 Score=48.17 Aligned_cols=76 Identities=12% Similarity=0.221 Sum_probs=58.0
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~E 184 (553)
..|||+|-|.+.+...+.-.|+.|.|....|+|++...... +..-.+..|+-|.|.|.|..=+ ..|.+-
T Consensus 24 ~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~------~l~f~p~eG~~V~v~G~is~Y~-----~rG~YQ 92 (440)
T COG1570 24 GQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNR------RLKFRPEEGMQVLVRGKISLYE-----PRGDYQ 92 (440)
T ss_pred CeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCccc------ccCCCccCCCEEEEEEEEEEEc-----CCCceE
Confidence 56999999999986665578999999999999999986321 1112488999999999987532 134677
Q ss_pred EEEeEEE
Q 008808 185 VQIKKLY 191 (553)
Q Consensus 185 i~v~~i~ 191 (553)
|.++++.
T Consensus 93 i~~~~~~ 99 (440)
T COG1570 93 IVAESME 99 (440)
T ss_pred EEEecCC
Confidence 7777654
No 148
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=89.18 E-value=0.96 Score=43.75 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=56.0
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccC-CC----CCccceee-cCC-CCceecccC--hhhHhhhc--ccCC--CceeEE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGS-SE----GGSAVFRL-DYK-GQSACLAQS--PQLHKQMS--ICGD--FGRVFE 319 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~-~e----gga~~F~v-~~~-~~~~~L~~S--Pql~lk~l--i~~g--~~rVfe 319 (553)
.+.+.+|++|...||.||-|..+++.. .. +...+.++ |-. ..--+||.| |.|..-.. +.-+ --|+||
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lFE 83 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLFE 83 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEEE
Confidence 345678999999999999999996531 10 11112222 211 122345544 33322111 1112 249999
Q ss_pred EeceecCCCCCCCCCcCcccceeEEeccc------------cCHHHHHHHHHHHHH
Q 008808 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFV 363 (553)
Q Consensus 320 Ig~~FR~E~~~t~rHl~EFt~lE~e~a~~------------~~~~~~m~~~e~ll~ 363 (553)
||+||..+.. +..|.+.|=.-++.. .++.|+-..++.++.
T Consensus 84 iG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~ 135 (198)
T cd00769 84 IGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLR 135 (198)
T ss_pred eEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHH
Confidence 9999976431 223444432222211 156666666666664
No 149
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=88.95 E-value=8.4 Score=34.42 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=51.8
Q ss_pred EEEEEEEEee---ec--cCCCceEEEEEE-------eCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 106 EVLIRGRVHT---TR--PVGNKLAFVVVR-------ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 106 ~V~v~GrV~~---~R--~~G~kl~Fl~Lr-------d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
.|.|.|||-+ +| ..|+.++=+.|- +.+.-+.|++-.+. .....+.|+.||-|.|+|.+....
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~~------Ae~~~~~l~KG~~V~V~G~l~~~~ 78 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKT------AQVAADYVKKGSLIGITGSLKFDR 78 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehHH------HHHHHHHcCCCCEEEEEEEEEecc
Confidence 4666676665 23 234333333333 23456777776531 122456799999999999997653
Q ss_pred C-ccC-CCce-eEEEEEeEEEEeecC
Q 008808 174 V-EIK-GATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 174 ~-~~~-~~t~-~~Ei~v~~i~~ls~~ 196 (553)
- ... |.+. ..||.+.+|..|++.
T Consensus 79 ~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 79 WTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred eEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 2 122 3333 399999999999753
No 150
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=88.40 E-value=2.7 Score=36.71 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=38.9
Q ss_pred CCCCCEEEEEEEEeeeccCCCceEEEEEE-eCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVR-ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lr-d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
...|+.|+|-|+|.+....| +. +.|+ -+++.|+|.+.... .+..+.+|.|.|+|....
T Consensus 15 ~~~gk~VrivGkv~~~~~~g-~~--~~l~~~d~~~V~v~l~~~~------------~~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 15 QFVGKTVRIVGKVESVDPDG-GS--ATLSTSDGGQVTVSLNPPS------------DEELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GGTTSEEEEEEEEEEE-TTS-SE--EEEE-TTS-EEEEEESS--------------SS---SEEEEEEEE-TTS
T ss_pred hhCCCeEEEEEEEeeEcCCC-CE--EEEEcCCCCEEEEEeCCCC------------CCCCCCEEEEEEEEcCCC
Confidence 58999999999999999777 42 3555 35568888877542 344588999999997543
No 151
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.39 E-value=0.25 Score=51.94 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=38.9
Q ss_pred CCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 292 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 292 ~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
-+....||.---.|---++.+|.+.---.|-|||-..+ +.+|-|=|.++|--.-+.
T Consensus 129 ~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdei-dsthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 129 VNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEI-DSTHYPVFHQMEGVRLWS 184 (436)
T ss_pred ecceeeehhcchhhHHHHHHhcccccceeeeeeeeccc-cccccceeccccceeEEe
Confidence 44555665333333333455667778889999999887 889999999998755443
No 152
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=87.58 E-value=2.5 Score=40.55 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=50.5
Q ss_pred CCCCEEEEEEEEeeec-cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH---hcCCCCceEEEEEEEec
Q 008808 102 LKDQEVLIRGRVHTTR-PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV---RSLSNESIVDVIGVVSV 171 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R-~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~---~~l~~esiV~V~G~v~~ 171 (553)
...+.|.|-|-|.+.+ ..|..+.|+.|.|++++|-++++.+. .+..... .-+..|++|.|+|.+..
T Consensus 49 ~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~t----ee~l~~n~~~p~~~eGe~veVtGrv~~ 118 (204)
T COG4085 49 RLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRST----EETLELNEGMPVTVEGEIVEVTGRVEE 118 (204)
T ss_pred eeeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecCh----hHhHhhcCCCCccccCcEEEEEEEEEE
Confidence 4456788999999998 55668999999999999999998763 2222211 13678999999999864
No 153
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=87.12 E-value=7.5 Score=30.26 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=40.0
Q ss_pred EEEEEeeec--cC-CCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 109 IRGRVHTTR--PV-GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 109 v~GrV~~~R--~~-G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|+|.+++ .. |++..-+.+.|+++.|.++..... . -....++.|+.+.|.|.+..-
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~i~~~~F~~~----~---~~~~~~~~G~~~~v~Gkv~~~ 61 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGTLTLVFFNFQ----P---YLKKQLPPGTRVRVSGKVKRF 61 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCEEEEEEECCC----H---HHHhcCCCCCEEEEEEEEeec
Confidence 566665542 11 346677888999999999987521 1 113569999999999999753
No 154
>PRK15491 replication factor A; Provisional
Probab=87.00 E-value=3.8 Score=43.86 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=65.1
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee-------ccCC--CceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCc
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNES 161 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~es 161 (553)
..+|++|.+. ...|+|.|||.++ |..| .++.=++|-|.+++|++++-.+. . -.+. ..|..|+
T Consensus 57 ~~kI~dL~~~--~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~--a----~~~~~~~le~G~ 128 (374)
T PRK15491 57 TTKIADINES--SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDL--A----DLIKTGDIEVGK 128 (374)
T ss_pred cccHHHCCCC--CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECch--h----hhhccCCcCCCC
Confidence 4567777542 3678999999987 3334 27777899999999999998642 1 1122 3599999
Q ss_pred eEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC
Q 008808 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT 199 (553)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~ 199 (553)
++.|.|.+...- . .+||++.+...+.+|...
T Consensus 129 v~~I~~~~~~~y------~-g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 129 SLNISGYAKEGY------S-GIEVNIGRYGGISESDEN 159 (374)
T ss_pred EEEEeeeeccCc------c-cEEEEeCCCceeeecccc
Confidence 999998743221 1 279999887778877543
No 155
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=86.97 E-value=10 Score=36.49 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=39.5
Q ss_pred CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
+.-|-|++-.+ ....+...|++||-|.|+|.+....- ...|.+.. +||.+.+|.+|++.
T Consensus 48 t~fi~v~~fg~------~AE~~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 48 VCFIDIRLFGR------TAEIANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred ceEEEEEEEhH------HHHHHHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 34566666543 11224567999999999999975432 22344444 99999999999764
No 156
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=86.19 E-value=1.6 Score=46.79 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc----cceee-cCCCCceecc--cChhhHhhh--cccCCCc
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS----AVFRL-DYKGQSACLA--QSPQLHKQM--SICGDFG 315 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga----~~F~v-~~~~~~~~L~--~SPql~lk~--li~~g~~ 315 (553)
.+....|.+.++..|...||..|+||+|.... ...|+ ..|++ +..|..+.|| ..+++...- .+.+...
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~pVaR~~~~~~~~~P~ 96 (390)
T COG3705 17 ARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTIPVARIHATLLAGTPL 96 (390)
T ss_pred HhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEecccccHHHHHHHHHhcCCCCc
Confidence 35567788888999999999999999997542 12122 37876 4567778888 333332210 1234688
Q ss_pred eeEEEeceecCCCCCCCCCcCcccceeEEe
Q 008808 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEM 345 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~ 345 (553)
|++..|+|||+... -+.-..||+|.=+|+
T Consensus 97 Rl~Y~G~Vfr~~~~-~~g~~~Ef~QaGiEl 125 (390)
T COG3705 97 RLSYAGKVFRAREG-RHGRRAEFLQAGIEL 125 (390)
T ss_pred eeeecchhhhcchh-ccCcccchhhhhhHH
Confidence 99999999999832 333446999988875
No 157
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=86.10 E-value=15 Score=34.93 Aligned_cols=57 Identities=16% Similarity=0.035 Sum_probs=39.6
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
-+.|++..+ ....+...|++||-|.|+|.+....- ...|.+.. +||.+.+|.+|+.-
T Consensus 53 w~~Vv~fgk------~AE~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 53 WHRIVFYRR------QAEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEEhH------HHHHHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 567766543 22335677999999999999976532 22344433 99999999998753
No 158
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=85.71 E-value=14 Score=34.92 Aligned_cols=85 Identities=14% Similarity=0.265 Sum_probs=53.4
Q ss_pred EEEEEEEEee---ec--cCCCceEEEEEE------e-----CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 106 EVLIRGRVHT---TR--PVGNKLAFVVVR------E-----RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 106 ~V~v~GrV~~---~R--~~G~kl~Fl~Lr------d-----~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.|.|.|||.. +| ..|..++-+.|- + ...-|.|++-.+ .....++.|++||-|.|+|.+
T Consensus 4 ~v~LiGrL~~DPElr~t~sG~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk------~Ae~~~~~l~KG~~V~VeGrl 77 (162)
T PRK07275 4 NVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQ------QAENLANWAKKGALIGVTGRI 77 (162)
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecCCCCEeeeEEEEEEEcH------HHHHHHHHcCCCCEEEEEEEE
Confidence 4667777764 34 245445555552 1 134677777654 122345679999999999999
Q ss_pred ecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 170 SVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 170 ~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
....- ...|.+.. .||.+.+|.+|.+.
T Consensus 78 ~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 78 QTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 75432 22344444 99999999998754
No 159
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=85.60 E-value=3.5 Score=45.08 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=58.2
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
.|||.|=|.+.+...+.=+|+.|.|....|.||+..+... ...-.+..|+-|.|.|.|..-+ ..|.+.|
T Consensus 19 ~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~------~l~f~~~~G~~V~v~g~v~~y~-----~~G~~ql 87 (432)
T TIGR00237 19 QVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNN------RLKFRPQNGQQVLVRGGISVYE-----PRGDYQI 87 (432)
T ss_pred cEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhh------CCCCCCCCCCEEEEEEEEEEEC-----CCCcEEE
Confidence 7999999999976544568999999999999999876310 0112478999999999987533 2356889
Q ss_pred EEeEEEE
Q 008808 186 QIKKLYC 192 (553)
Q Consensus 186 ~v~~i~~ 192 (553)
.|.++..
T Consensus 88 ~v~~i~~ 94 (432)
T TIGR00237 88 ICFEMQP 94 (432)
T ss_pred EEEEecc
Confidence 9988864
No 160
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=85.58 E-value=11 Score=31.81 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=32.2
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc-cCCCce-eEEEEEeEEEEe
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGATQ-QVEVQIKKLYCV 193 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~-~~~~t~-~~Ei~v~~i~~l 193 (553)
.++|++-.+ ........+..||.|.|+|.+....-. ..|.+. .++|.+++|.+|
T Consensus 49 ~~~v~~~g~------~A~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 49 WINVVAWGK------LAENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEEHH------HHHHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEEeeee------cccccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 567766643 122345669999999999998754321 124443 399999999875
No 161
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=85.34 E-value=17 Score=34.64 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=40.3
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
.-+-|++-.+ ....+...|++|+.|.|+|.+....- ...+.+.. +||.+..|.+|.+.
T Consensus 47 dwi~~v~wgk------~Ae~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 47 DFINCVIWRK------QAENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEEEeCc------HHHHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 3566766643 22335667999999999999986542 22354444 99999999998753
No 162
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=85.09 E-value=3.8 Score=47.48 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=51.1
Q ss_pred ccCCCCCCEEEEEEEEeeeccC--CCceEEEEEEeCCeEEEEEeecCCCCcchHHHHH-HhcCCCCceEEEEEEEec
Q 008808 98 LNGSLKDQEVLIRGRVHTTRPV--GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~R~~--G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~-~~~l~~esiV~V~G~v~~ 171 (553)
+.+...|+.|+|.|+|.+.+.. ++++.-+.+.|+++.++++....+ . .| .+.++.|+.+.|.|+|..
T Consensus 53 i~~l~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n----~---~~~~~~l~~G~~~~v~Gkv~~ 122 (681)
T PRK10917 53 IAELRPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFN----Q---PYLKKQLKVGKRVAVYGKVKR 122 (681)
T ss_pred HHHCCCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccC----c---HHHHhhCCCCCEEEEEEEEEe
Confidence 3444679999999999886432 446777889999999999988411 0 24 357999999999999975
No 163
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=85.00 E-value=3.2 Score=37.73 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCC--eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~--~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
....|+.|.|.|.|..++....+-.++.+.++. ..|+|.+..+.. . ......|+.|+.|.|+|++.-
T Consensus 63 ~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~--~~~~~~l~~G~~Vti~G~~~g 131 (144)
T PF12869_consen 63 KKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQE---K--RASVAKLKKGQKVTIKGICTG 131 (144)
T ss_dssp HHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGG---G--HHHHHH--TTSEEEEEEE---
T ss_pred hhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchh---h--hhhHhcCCCCCEEEEEEEEEe
Confidence 356799999999999997633244555555533 468888876521 1 112345999999999998753
No 164
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=84.96 E-value=4.2 Score=44.39 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=60.3
Q ss_pred CCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 104 g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
-..|||.|=|.+.+.+++.=+|+.|.|....|-||+-..... +..-.+..|+-|.|.|.|..-+ ..|.+
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~------~~~~~~~~G~~v~v~g~~~~y~-----~~g~~ 91 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSAR------RLKFKPEEGMKVLVRGKVSLYE-----PRGDY 91 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhh------cCCCCCCCCCEEEEEEEEEEEC-----CCCCE
Confidence 467999999999876644568999999999999999986310 1112488999999999997532 13568
Q ss_pred EEEEeEEEEe
Q 008808 184 EVQIKKLYCV 193 (553)
Q Consensus 184 Ei~v~~i~~l 193 (553)
.|.|.+|...
T Consensus 92 ql~v~~i~~~ 101 (438)
T PRK00286 92 QLIVEEIEPA 101 (438)
T ss_pred EEEEEEeeeC
Confidence 9999888753
No 165
>PRK02801 primosomal replication protein N; Provisional
Probab=83.47 E-value=24 Score=30.36 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=33.8
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEe
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
.|+|++-.+ ......+.++.||-|.|+|.+..- +...|. ..+.|++..++.+
T Consensus 49 ~i~~va~G~------~Ae~~~~~l~kGs~v~V~G~L~~~-~~~~g~-~~~~v~~~~i~~l 100 (101)
T PRK02801 49 RMPVIVSGN------QFQAITQSITVGSKITVQGFISCH-QGRNGL-SKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEEcH------HHHHHHhhcCCCCEEEEEEEEEEe-ECCCCC-EEEEEEEEEEEEC
Confidence 388877653 222344579999999999999861 222221 2355888888765
No 166
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=83.38 E-value=29 Score=30.31 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=39.3
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
.-+.|++-.+ ....+.+.+..||-|.|+|.+....- ...|.+. .+||.+.+|.+|++.
T Consensus 47 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 47 DFINCVVWRK------SAENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred EEEEEEEehH------HHHHHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 3456665543 12234567999999999999986532 2234444 399999999998754
No 167
>PRK12366 replication factor A; Reviewed
Probab=83.26 E-value=6 Score=45.42 Aligned_cols=93 Identities=10% Similarity=0.069 Sum_probs=63.4
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeec---------cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCce
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTR---------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R---------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esi 162 (553)
...|++|++-..|..++|+|||.++- ..| ++.=+.|.|+++.|++++-... . .+| ..|..|++
T Consensus 279 ~~pI~~L~~~~~g~~~~I~grV~~~~~~R~f~~~~g~g-kv~s~~l~D~tG~IR~t~w~~~--~----d~~-~~l~~G~v 350 (637)
T PRK12366 279 IVNIEELTEFEDGEEVDVKGRIIAISDKREVERDDRTA-EVQDIELADGTGRVRVSFWGEK--A----KIL-ENLKEGDA 350 (637)
T ss_pred ceeHHHCCcccCCCEEEEEEEEEecCCceEEEcCCCcE-EEEEEEEEcCCCeEEEEEeCch--h----hhh-cccCCCCE
Confidence 45667776533688999999999872 246 8888999999999999998652 1 123 34689999
Q ss_pred EEEEEEEecCCCccCCCceeEEEEEeEEEEe
Q 008808 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 163 V~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
+.|.+-..+.-... ....++||.+..-..+
T Consensus 351 y~is~~~vk~y~~~-~~~~~~El~~~~~s~I 380 (637)
T PRK12366 351 VKIENCKVRTYYDN-EGEKRVDLNAGYSSEI 380 (637)
T ss_pred EEEecCEEeecccc-CCCcCEEEEcCCceEE
Confidence 99998655421111 1124588888554433
No 168
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=82.72 E-value=26 Score=33.01 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=39.7
Q ss_pred CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
+.-+.|++-.+ ......+.|++||.|.|+|.+....- ...|.+.. +||.+.+|.+|+-.
T Consensus 42 T~wi~v~awg~------~Ae~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 42 TVWCRCNIWGN------RYDKMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred eEEEEEEEEhH------HHHHHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 34566666543 11223566999999999999975432 23354444 99999999999654
No 169
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.50 E-value=3.1 Score=44.68 Aligned_cols=116 Identities=12% Similarity=0.162 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C----CCCccceeecCCCCceecccChhhHhhhc-----cc-
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S----EGGSAVFRLDYKGQSACLAQSPQLHKQMS-----IC- 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~----egga~~F~v~~~~~~~~L~~SPql~lk~l-----i~- 311 (553)
+...+-.+++++--+|+..+||+=+.||.|.... | .+.-..+.+---+.+.||.-..|.-+--+ +.
T Consensus 183 ~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~ 262 (455)
T KOG2509|consen 183 AGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEE 262 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhccccccc
Confidence 4556778899999999999999999999886421 1 11111222211122344432222221100 00
Q ss_pred CC-CceeEEEeceecCCC-C--CCCC---CcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 312 GD-FGRVFETGPVFRAED-S--YTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 312 ~g-~~rVfeIg~~FR~E~-~--~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
.. --|+--.++|||.|- + .+.+ -..+|+-+|.-. +. +-++--++.|+|+.
T Consensus 263 ~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it-~Pe~S~~~~eEmi~ 319 (455)
T KOG2509|consen 263 DQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-IT-GPEDSWEMLEEMIN 319 (455)
T ss_pred ccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ec-CcchhHHHHHHHHH
Confidence 01 135556789999995 2 1222 234899999743 22 34454555555554
No 170
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=81.98 E-value=13 Score=38.95 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCC
Q 008808 103 KDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (553)
Q Consensus 103 ~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (553)
.|+.|..-.-|.++. ..|+.-..+.|.|.++.|.+.+=... . .....+..|++|.|.|.+..-.
T Consensus 10 ~g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~I~ak~W~~~----~---~~~~~~~~g~vv~v~G~v~~y~----- 77 (314)
T PRK13480 10 VGEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDVS----P---EDEATYVPETIVHVKGDIINYR----- 77 (314)
T ss_pred CCCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcEEEEEeCCCC----h---hhHhhcCCCCEEEEEEEEEEEC-----
Confidence 355555555555442 34656777889999999999985432 1 2246799999999999987432
Q ss_pred CceeEEEEEeEEEEeecC
Q 008808 179 ATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 179 ~t~~~Ei~v~~i~~ls~~ 196 (553)
+.+.|.+.++..+.+.
T Consensus 78 --g~~Ql~i~~i~~~~~~ 93 (314)
T PRK13480 78 --GRKQLKVNQIRLATEE 93 (314)
T ss_pred --CcceEEEEEeEECCCC
Confidence 2467888888887664
No 171
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=81.18 E-value=32 Score=31.09 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHhcCCCCceEEEEEEEecCCCccCCCcee-EEEEEeEEEEeec
Q 008808 153 FVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSR 195 (553)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~~~~~~t~~-~Ei~v~~i~~ls~ 195 (553)
..+.|++||.|.|+|.+....-...|.+.. +||.+.++.+|..
T Consensus 61 v~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 61 LASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLES 104 (131)
T ss_pred HHHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcC
Confidence 456799999999999987654433344443 8999999998864
No 172
>PRK07211 replication factor A; Reviewed
Probab=80.66 E-value=13 Score=41.23 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=57.7
Q ss_pred EEeccccCCCCCCEEEEEEEEeeecc-----------CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCc
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRP-----------VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~-----------~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (553)
.+|.+|.+. ...|+|.|||.++-. .| |++=++|-|.++.|.+++-.. +..++...|..|+
T Consensus 54 ~~I~dL~pg--~~~vtI~aRV~~~~~~Rt~~~~~~~~eG-kv~~v~l~DeTG~Ir~TlW~d------~ad~~~~~Le~Gd 124 (485)
T PRK07211 54 NGIADIEPG--MDEVKFLAKVLSIGDLRTFERDGEDEDG-RVINVEVADETGSVRVAFWDE------QAVAAEEELEVGQ 124 (485)
T ss_pred ccHhhCCCC--CCceEEEEEEeEccCceEEEeCCCCCCc-EEEEEEEEcCCCeEEEEEech------HhHhhhcccCCCC
Confidence 356666531 255888888877622 35 899999999999999999764 2234567899999
Q ss_pred eEEEEEEEecCCCccCCCceeEEEEEeEE
Q 008808 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKL 190 (553)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~~Ei~v~~i 190 (553)
++.|.|.++.- -..+||.+.++
T Consensus 125 V~~I~~~~~~~-------ys~~El~i~~v 146 (485)
T PRK07211 125 VLRIKGRPKDG-------YNGLEVSVDKV 146 (485)
T ss_pred EEEEeceEecc-------ccceEEEEeeE
Confidence 99999876421 11368888754
No 173
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.41 E-value=34 Score=32.17 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=38.5
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc-cCCCcee-EEEEEeEEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~-~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
..+.|++-.+ ....+...|++|+.|.|+|.+....-. ..+.+.. +||.+.+|..|...
T Consensus 51 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 51 EWHDIVIFGR------LAEVAAQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred eEEEEEEehH------HHHHHHHhCCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 3556665533 222345689999999999999755321 1344433 99999999887654
No 174
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=79.37 E-value=35 Score=32.58 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=32.7
Q ss_pred HHhcCCCCceEEEEEEEecCCCccCCCcee-EEEEEe---EEEEeecCC
Q 008808 153 FVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIK---KLYCVSRAA 197 (553)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~~~~~~t~~-~Ei~v~---~i~~ls~~~ 197 (553)
....|+.||.|.|+|.+....-...|.+.. .||.+. ++.+|++..
T Consensus 68 v~~~L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~~ 116 (175)
T PRK13732 68 AGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAP 116 (175)
T ss_pred HHHhcCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCCC
Confidence 456799999999999987543222344433 899998 899987654
No 175
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=79.36 E-value=36 Score=30.79 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=50.8
Q ss_pred eEEeccccC--CCCCCEEEEEEEEe--eecc--CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEE
Q 008808 92 WTVVGALNG--SLKDQEVLIRGRVH--TTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165 (553)
Q Consensus 92 ~~~i~~l~~--~~~g~~V~v~GrV~--~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V 165 (553)
|....++.. ...|+.|+|.|.|. ++.. .+..+.| +|.|++..|.|+..... + ..++.|.-|-|
T Consensus 36 y~t~se~~~~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F-~i~D~~~~i~V~Y~G~~---P-------d~F~eg~~VVv 104 (131)
T PF03100_consen 36 YLTPSELAAEPQKVGRKVRVGGLVVEGSVEYDPDGNTLTF-TITDGGKEIPVVYTGPL---P-------DLFREGQGVVV 104 (131)
T ss_dssp EE-TTTTTTTST-TTSEEEEEEEEECTTEEE-TTSSEEEE-EEE-SS-EEEEEEES-----C-------TT--TTSEEEE
T ss_pred EcCHHHHhhccccCCceEEEeeEEccCCEEEcCCCCEEEE-EEEECCcEEEEEECCCC---C-------ccccCCCeEEE
Confidence 444555432 24799999999998 5533 3446775 67899999999988642 1 24677999999
Q ss_pred EEEEecCCCccCCCceeEEEEEeEEEEeecCCC
Q 008808 166 IGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAK 198 (553)
Q Consensus 166 ~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~ 198 (553)
+|.....+ -++++ .+|.+|..
T Consensus 105 ~G~~~~~g----------~F~A~--~lL~Kcps 125 (131)
T PF03100_consen 105 EGRLGEDG----------VFEAT--ELLAKCPS 125 (131)
T ss_dssp EEEECCTS----------EEEEE--EEEETS--
T ss_pred EEEECCCC----------EEEEE--EEEeCCCC
Confidence 99884322 44454 45777743
No 176
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=79.22 E-value=21 Score=32.17 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=57.0
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeec------cCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceE
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTR------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV 163 (553)
..+|++|.+. ...|.+.|.|.++- ..|+ ++.-+.|.|.+++|.+.+=.+. +..|..||+|
T Consensus 4 ~~kI~dL~~g--~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~~----------a~~l~~GdvV 71 (129)
T PRK06461 4 ITKIKDLKPG--MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGEQ----------AGSLKEGEVV 71 (129)
T ss_pred ceEHHHcCCC--CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCCc----------cccCCCCCEE
Confidence 4667777531 26788888888432 2232 4667889999999998885531 2358899999
Q ss_pred EEEE-EEecCCCccCCCceeEEEEEe---EEEEeec
Q 008808 164 DVIG-VVSVPDVEIKGATQQVEVQIK---KLYCVSR 195 (553)
Q Consensus 164 ~V~G-~v~~~~~~~~~~t~~~Ei~v~---~i~~ls~ 195 (553)
.|.+ .+..- .+.++|.+. .|..+..
T Consensus 72 ~I~na~v~~f-------~G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 72 EIENAWTTLY-------RGKVQLNVGKYGSISESDD 100 (129)
T ss_pred EEECcEEeee-------CCEEEEEECCCEEEEECCc
Confidence 9994 54421 246889887 4666554
No 177
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=78.72 E-value=36 Score=28.08 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=50.9
Q ss_pred EEEEEEEeee--c--cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCC-CCceEEEEEEEecCCCccCCCce
Q 008808 107 VLIRGRVHTT--R--PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLS-NESIVDVIGVVSVPDVEIKGATQ 181 (553)
Q Consensus 107 V~v~GrV~~~--R--~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~-~esiV~V~G~v~~~~~~~~~~t~ 181 (553)
|.|.|-|..+ | ..|+.+.-+.|.|.+..|-|....+. . .+....|. .|+.|.|.|.+....- .+
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~~-~-----~~~~~~ik~~G~~v~v~G~v~~D~f-----~~ 70 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLRK-D-----EKDKEELKSKGDWVRVRGKVQYDTF-----SK 70 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEeccC-C-----hhHHhhcccCCCEEEEEEEEEEccC-----CC
Confidence 6789998876 2 34656666889999988888777631 1 12235688 9999999999976531 23
Q ss_pred eEEEEEeEEE
Q 008808 182 QVEVQIKKLY 191 (553)
Q Consensus 182 ~~Ei~v~~i~ 191 (553)
++.+.+..+.
T Consensus 71 e~~~~i~~i~ 80 (82)
T cd04484 71 ELVLMINDIE 80 (82)
T ss_pred ceEEEeeeEE
Confidence 5666666553
No 178
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=78.66 E-value=44 Score=31.60 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=32.4
Q ss_pred HHhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEeecC
Q 008808 153 FVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
....|+.||.|.|+|.+....- ...|.+. .+||.+.+|.+|...
T Consensus 66 v~~~L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 66 AGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred HHHhcCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 3456999999999999976532 2234333 399999999998754
No 179
>PRK14699 replication factor A; Provisional
Probab=78.59 E-value=12 Score=41.59 Aligned_cols=89 Identities=12% Similarity=0.197 Sum_probs=61.0
Q ss_pred EEeccccCCCCCCEEEEEEEEeee-------ccCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHh--cCCCCc
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTT-------RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR--SLSNES 161 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~--~l~~es 161 (553)
.+|++|.+ .+..|+|.|||.++ |..|+ +++=+.|-|.+++|-+++=.+. .+.+. .|..||
T Consensus 58 ~kI~di~~--~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~ir~tlW~~~-------a~~~~~g~l~~GD 128 (484)
T PRK14699 58 VKIENITP--ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGKIKLTLWDNM-------ADLIKAGKIKAGQ 128 (484)
T ss_pred ccHhHccC--CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCeEEEEEecCc-------cchhhhcCCCCCC
Confidence 46666643 34779999999988 34443 6666789999999999886542 11122 599999
Q ss_pred eEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCC
Q 008808 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
+|.|.|.+. ... +.+||.+.+..++.++.
T Consensus 129 vv~I~~~~r-~~~------~g~el~~~~~~~i~~~~ 157 (484)
T PRK14699 129 TLQISGYAK-QGY------SGVEVNIGNNGVLTESE 157 (484)
T ss_pred EEEEcceec-cCC------CCceEEeCCCceeeccC
Confidence 999999642 221 23688887666666643
No 180
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=77.13 E-value=42 Score=32.25 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=40.1
Q ss_pred CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
+.-+.|++..+ ....+.+.|++||.|.|+|.+....- ...+.+.. +||.+.+|.+|...
T Consensus 51 T~w~~V~~fGk------~AE~v~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 51 TEWHRVAFFGR------LAEIVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred ceEEEEEEehH------HHHHHHHHhCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 34566666543 22234567999999999999986532 12344443 99999999999754
No 181
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=76.06 E-value=1.6 Score=45.98 Aligned_cols=35 Identities=34% Similarity=0.797 Sum_probs=28.4
Q ss_pred hhcCC-CCcceeeecHHHHHHHHcCCCCccccccccC
Q 008808 511 FRYGA-PPHGGFGVGLERVVMLFCGLNNIRKTSLYPR 546 (553)
Q Consensus 511 ~~~G~-pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr 546 (553)
-+||. -|---+|+|+|||.|.|-|.++||.. .+|.
T Consensus 317 aeY~Id~pVMNLGlGVERlaMIl~g~~DVR~m-vYpq 352 (536)
T COG2024 317 AEYGIDYPVMNLGLGVERLAMILHGADDVRSM-VYPQ 352 (536)
T ss_pred HHcCCCCceeecchhHHHHHHHHhCchHHhhh-hccc
Confidence 34776 46789999999999999999999975 3443
No 182
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=75.86 E-value=6.5 Score=47.53 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeec-cCCCCC-ccceee-cCCCCc----eecccChhhHhhhcccCCCceeEEE
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIA-GSSEGG-SAVFRL-DYKGQS----ACLAQSPQLHKQMSICGDFGRVFET 320 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~-~~~egg-a~~F~v-~~~~~~----~~L~~SPql~lk~li~~g~~rVfeI 320 (553)
=.+|..++..+-+-|...|++|++||-|.. +++..+ .++..+ +.-|.. +=||+----|.-+==+. .-|-|+|
T Consensus 932 ~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~N~~~-~~Kry~i 1010 (1351)
T KOG1035|consen 932 NELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSRNSVL-SFKRYCI 1010 (1351)
T ss_pred HHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecCCCCEEEeeccccchHHHHhhhchHH-HHHHhhh
Confidence 357888899999999999999999997753 222221 223332 333322 22333222222211111 2356999
Q ss_pred eceecCCCCCCCCCcCcccceeEEecccc---CHHHHHHHHHHHHHHHHH
Q 008808 321 GPVFRAEDSYTHRHLCEFTGLDVEMEIKK---HYSEVMDIVDRLFVTIFD 367 (553)
Q Consensus 321 g~~FR~E~~~t~rHl~EFt~lE~e~a~~~---~~~~~m~~~e~ll~~i~~ 367 (553)
++|||-+.. +|--|++.|+|-.--.. --.|++.++-+++..++.
T Consensus 1011 ~rVyr~~~~---~hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~ 1057 (1351)
T KOG1035|consen 1011 SRVYRPAIH---NHPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILH 1057 (1351)
T ss_pred heeeccccc---CCCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhc
Confidence 999998872 38889999998542110 015677777777766544
No 183
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=75.14 E-value=9.4 Score=45.81 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=50.8
Q ss_pred CCCEEEEEEEEeeec---cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 103 KDQEVLIRGRVHTTR---PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 103 ~g~~V~v~GrV~~~R---~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
.++.|+|.|.|.++| ..|..++|++|.|.++.+.+++..+. ++....+..++++.|+|......
T Consensus 896 ~~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~~e~~~F~~~-------~~~~~~l~~~~~~~~~~~~~~~~ 962 (973)
T PRK07135 896 INTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVEITIFVNDND-------YLLFETLKKGDIYEFLISKSKNN 962 (973)
T ss_pred CCCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCcEEEEEcHHH-------HHHHHHhhcCCEEEEEEEEcCCC
Confidence 577899999999865 44778999999999999999998652 22233588899999999876543
No 184
>PRK07080 hypothetical protein; Validated
Probab=75.02 E-value=3.2 Score=43.09 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=34.5
Q ss_pred eeEEE-eceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 316 RVFET-GPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 316 rVfeI-g~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
++|.+ |.|||+|++.+.+-+-||+|-|+-. ..+-+++.+.-+..+.
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~--iGt~e~v~~~r~~w~e 199 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVR--IGTPEQIVAFRQSWIE 199 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEE--ecCHHHHHHHHHHHHH
Confidence 66665 8899999998888889999999854 3456666666555543
No 185
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=74.75 E-value=29 Score=34.69 Aligned_cols=118 Identities=14% Similarity=0.230 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhH-----hCCcEEEecceeeccCCC-----CCc-c--ceeecCC-CCceecccChhhHhhhccc-CCC--
Q 008808 252 SQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GGS-A--VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF-- 314 (553)
Q Consensus 252 s~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~e-----gga-~--~F~v~~~-~~~~~L~~SPql~lk~li~-~g~-- 314 (553)
.+-|..|+++|. ..+.+.|..|+++...++ +|. + .|.+... +..+-.-+|---||.+++. -||
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f~~ 86 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGFPP 86 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCCCC
Confidence 344566666663 579999999999754321 122 2 4666544 6778888999999988874 244
Q ss_pred -ceeEEEeceec-CCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHh
Q 008808 315 -GRVFETGPVFR-AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370 (553)
Q Consensus 315 -~rVfeIg~~FR-~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~ 370 (553)
+.+|.=....| .|+.-+..|.-=.-|-|||+.+.. -+.-++.+.+.+..|+..+.
T Consensus 87 geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~-~~Rnl~~Lk~tV~~Iy~aik 143 (244)
T PF03590_consen 87 GEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISK-EDRNLEFLKETVRKIYKAIK 143 (244)
T ss_dssp T-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--T-T--SHHHHHHHHHHHHHHHH
T ss_pred CceEeecCceeecchhccCcceEEEecccCHhhhcCc-ccccHHHHHHHHHHHHHHHH
Confidence 58999999999 876558899999999999999874 35566667777777776665
No 186
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=74.12 E-value=16 Score=42.02 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=49.7
Q ss_pred cccCCCCCCEEEEEEEEeeec---cCCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHH-HhcCCCCceEEEEEEEec
Q 008808 97 ALNGSLKDQEVLIRGRVHTTR---PVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~R---~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~-~~~l~~esiV~V~G~v~~ 171 (553)
.+++-..|+.|+|.|+|.+.. ..+.++.-+.+.| +++.+.+++... .| .+.++.|+.|-|.|+|..
T Consensus 25 ~i~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~F~~---------~~~~~~~~~g~~~~~~Gk~~~ 95 (630)
T TIGR00643 25 TIGELLPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYKKLELRFFNR---------AFLKKKFKVGSKVVVYGKVKS 95 (630)
T ss_pred CHHHcCCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCCEEEEEEECC---------HHHHhhCCCCCEEEEEEEEEe
Confidence 344556799999999987532 1223556678899 999999999853 13 356999999999999975
Q ss_pred C
Q 008808 172 P 172 (553)
Q Consensus 172 ~ 172 (553)
.
T Consensus 96 ~ 96 (630)
T TIGR00643 96 S 96 (630)
T ss_pred e
Confidence 3
No 187
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=73.67 E-value=11 Score=42.57 Aligned_cols=109 Identities=20% Similarity=0.332 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccC-C-C----CCccceee-cCCC-CceecccC--hhhHhhhcccCC---C--ce
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS-S-E----GGSAVFRL-DYKG-QSACLAQS--PQLHKQMSICGD---F--GR 316 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~-~-e----gga~~F~v-~~~~-~~~~L~~S--Pql~lk~li~~g---~--~r 316 (553)
..+.+.+|++|...||.|+-|-.+++.. . + .......+ |-.. ..-+||.| |.|-. .+.-. . -|
T Consensus 365 ~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~--~~~~N~~~~~~~~ 442 (551)
T TIGR00471 365 NKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLE--TLSENKHHELPQK 442 (551)
T ss_pred HHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHH--HHHhcccCCCCee
Confidence 4556678999999999999999997531 0 0 00011111 2222 23456655 33322 12111 1 28
Q ss_pred eEEEeceecCCCCCCCCCcCcccceeEEecc-ccCHHHHHHHHHHHHH
Q 008808 317 VFETGPVFRAEDSYTHRHLCEFTGLDVEMEI-KKHYSEVMDIVDRLFV 363 (553)
Q Consensus 317 VfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~-~~~~~~~m~~~e~ll~ 363 (553)
+||||+||...+. +..+-.+|.++=+-++. ..++.++...++.++.
T Consensus 443 lFEiG~Vf~~~~~-~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~ 489 (551)
T TIGR00471 443 IFEIGDVVVKDDK-SETRSRVVTKLAVGITHSEANFNEIKSIVAALAR 489 (551)
T ss_pred EEEEEEEEEcCCc-cccccceeeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999999965321 11133344555544432 1268888888877774
No 188
>PRK12366 replication factor A; Reviewed
Probab=72.78 E-value=19 Score=41.43 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=59.6
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee-------ccCC--CceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCc
Q 008808 91 EWTVVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (553)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (553)
...+|++|.+.. ..|+|.|||.++ |..| .++.=++|-|.+++|.+++-... .++...|..|+
T Consensus 62 ~~~~I~dl~p~~--~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG~Ir~t~W~~~-------~~~~~~le~G~ 132 (637)
T PRK12366 62 EDFKISDIEEGQ--INVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTGTIRLTLWNDN-------AKLLKGLKEGD 132 (637)
T ss_pred ceeEHHHCcCCC--cceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCCEEEEEEEchh-------hhhhccCCCCC
Confidence 457788886422 458999999765 2322 27888999999999999998652 23346799999
Q ss_pred eEEEEEEEecCCCccCCCceeEEEEEeE
Q 008808 162 IVDVIGVVSVPDVEIKGATQQVEVQIKK 189 (553)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~~Ei~v~~ 189 (553)
++.|.|...+.- .+.+||.+..
T Consensus 133 v~~i~~~~v~~~------~~~~el~~~~ 154 (637)
T PRK12366 133 VIKIENARSRKW------NNDVELNSGS 154 (637)
T ss_pred EEEEeccEeccc------CCceEEEcCC
Confidence 999999765432 2357776643
No 189
>PRK14699 replication factor A; Provisional
Probab=71.25 E-value=20 Score=39.84 Aligned_cols=91 Identities=14% Similarity=0.248 Sum_probs=63.2
Q ss_pred EeccccCCCCCCEEEEEEEEeee-------ccCC--CceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEE
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (553)
.|.+|. ..+..|.|.|||.++ |..| .++.=+.|-|+++.|.+++-... .++...|..|+.|.
T Consensus 278 ~I~~L~--~~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG~Ir~T~W~~~-------a~~~~~i~~Gd~v~ 348 (484)
T PRK14699 278 PIEDIK--ADMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTGKIRLTLWDEK-------TNFLDEIDFDETVE 348 (484)
T ss_pred CHHHcC--CCCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCCeEEEEEeCcc-------cccccccCCCceEE
Confidence 344443 246789999999966 2233 27777899999999999987542 13445788999998
Q ss_pred EEEEEecCCCccCCCceeEEEEEeEEEEeecCC
Q 008808 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 165 V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
|.+.-++-. ...+.+||.+.+-.++.+|.
T Consensus 349 i~~~y~~~~----~~~~~~eL~~~~~t~I~~~~ 377 (484)
T PRK14699 349 VLNAYSREN----TFSQQVELNLGARGIIQKSE 377 (484)
T ss_pred EEeEEEEec----cCCccEEEEecCceeEeecC
Confidence 887543311 22346999998888888774
No 190
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=71.25 E-value=75 Score=31.50 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=59.2
Q ss_pred CCEEEEEEEEeee---cc--CCCceEEEEEEeC-----CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 104 DQEVLIRGRVHTT---RP--VGNKLAFVVVRER-----VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 104 g~~V~v~GrV~~~---R~--~G~kl~Fl~Lrd~-----~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
-..|.|.|||-.- |. .|..++-+.|--. +..|.|++-.+. .+++..|+.||-|.|.|.+....
T Consensus 109 ~N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~i~~v~wg~~-------Ae~~~~l~KG~~V~V~GrL~sr~ 181 (219)
T PRK05813 109 PNEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDYIPCIAWGRN-------ARFCKTLEVGDNIRVWGRVQSRE 181 (219)
T ss_pred ccEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceEEEEEEEhHH-------hHHHhhCCCCCEEEEEEEEEecc
Confidence 3679999999863 53 4656776666532 457888877542 23455699999999999998653
Q ss_pred Cc-cCC-----CceeEEEEEeEEEEeecC
Q 008808 174 VE-IKG-----ATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 174 ~~-~~~-----~t~~~Ei~v~~i~~ls~~ 196 (553)
-. ..+ .....||.+.+++.|++-
T Consensus 182 y~~k~g~~~g~kr~~~eV~v~~i~~l~~~ 210 (219)
T PRK05813 182 YQKKLSEGEVVTKVAYEVSISKMEKVEKE 210 (219)
T ss_pred eEcCCCCccceEEEEEEEEEEEEEEcCCh
Confidence 21 122 122499999999998764
No 191
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=71.22 E-value=23 Score=29.48 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=37.3
Q ss_pred CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccC-CCcee-EEEEEeEEEEe
Q 008808 131 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK-GATQQ-VEVQIKKLYCV 193 (553)
Q Consensus 131 ~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~-~~t~~-~Ei~v~~i~~l 193 (553)
....++|.+-.+ ....+.+.++.||.|.|+|.+....-..+ +.+.. ++|.++.|.++
T Consensus 42 ~~~~~~v~~~g~------~a~~~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 42 ETDWIRVVAFGK------LAENAAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred ccEEEEEEEEhH------HHHHHHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEEC
Confidence 345677777653 11234567999999999999976532222 33333 89999888753
No 192
>PRK15491 replication factor A; Provisional
Probab=70.40 E-value=20 Score=38.45 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=56.5
Q ss_pred CEEEEEEEEeeec-------cCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEE-EecCCC
Q 008808 105 QEVLIRGRVHTTR-------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV-VSVPDV 174 (553)
Q Consensus 105 ~~V~v~GrV~~~R-------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~-v~~~~~ 174 (553)
..|.|.|||.++- ..|. ++.=+.|-|++++|.+.+-.... +....|..|++|.|.+. +...
T Consensus 177 ~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~Ir~t~W~~~a-------~~~~~l~~Gd~V~i~~~~~r~~-- 247 (374)
T PRK15491 177 SDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGKIRVTLWDGKT-------DLADKLENGDSVEIINGYARTN-- 247 (374)
T ss_pred ccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCeEEEEEecchh-------cccccCCCCCEEEEEeceEEEe--
Confidence 4599999999873 2343 56668889999999998876421 11256999999999774 4321
Q ss_pred ccCCCceeEEEEEeEEEEeecCC
Q 008808 175 EIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 175 ~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
...+.+||.+.+-..+.+|.
T Consensus 248 ---~~~g~~El~~~~~s~I~~~~ 267 (374)
T PRK15491 248 ---NYSQEVEIQIGNHGSLRKTD 267 (374)
T ss_pred ---ccCCCEEEEeCCCceEEECC
Confidence 12357999987666676764
No 193
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=70.38 E-value=20 Score=30.19 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=44.7
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|.|.+++..+. =+|+.|+|.+|.+++.+..+- +..+...|..|+++-...+-..
T Consensus 6 ~l~v~Iks~~~~~~-D~~v~l~DpTG~i~~tiH~~v------~~~y~~~l~~GavLlLk~V~Vf 62 (86)
T PF15072_consen 6 CLVVIIKSIVPSSE-DAFVVLKDPTGEIRGTIHRKV------LEEYGDELSPGAVLLLKDVTVF 62 (86)
T ss_pred EEEEEEEEeeccCC-CeEEEEECCCCcEEEEEeHHH------HhhcCCccccCEEEEEeeeeEE
Confidence 68899999999885 689999999999999999651 2234567889988877764433
No 194
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=70.00 E-value=71 Score=29.68 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=52.9
Q ss_pred CCCCEEEEEEEEee--e-ccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCC
Q 008808 102 LKDQEVLIRGRVHT--T-RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (553)
Q Consensus 102 ~~g~~V~v~GrV~~--~-R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (553)
..|+.|+|.|.|.. + |..|..+.| .|.|++..|.|..... .+ ..++.|.-|-|+|.+...+
T Consensus 49 ~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~~~i~V~Y~G~---lP-------d~F~eg~~VVv~G~~~~~g----- 112 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGNATVPVVYTGI---LP-------DLFREGQGVVAEGRLQDGG----- 112 (148)
T ss_pred cCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCCeEEEEEECCC---CC-------ccccCCCEEEEEEEECCCC-----
Confidence 57999999999953 4 335546776 6789989998887753 22 2467799999999985321
Q ss_pred CceeEEEEEeEEEEeecCCCC
Q 008808 179 ATQQVEVQIKKLYCVSRAAKT 199 (553)
Q Consensus 179 ~t~~~Ei~v~~i~~ls~~~~~ 199 (553)
.++++ .||.+|...
T Consensus 113 -----~F~A~--~vLaKc~sk 126 (148)
T PRK13254 113 -----VFVAD--EVLAKHDEN 126 (148)
T ss_pred -----eEEEE--EEEecCCCC
Confidence 34455 458888665
No 195
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=69.94 E-value=92 Score=28.97 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEE----EEeecC
Q 008808 153 FVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKL----YCVSRA 196 (553)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i----~~ls~~ 196 (553)
..+.|+.||.|.|+|.+....- ...|.+.. .||.+.++ ..|.+.
T Consensus 68 ~~~~l~KG~~V~V~GrL~~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~k 117 (152)
T PRK06642 68 VERYVTKGSKLYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSK 117 (152)
T ss_pred HHHhCCCCCEEEEEEEEEeCeeECCCCCEEEEEEEEEEecccceEeccCC
Confidence 3456999999999999975532 22344444 88988876 666643
No 196
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=69.59 E-value=43 Score=27.22 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=38.7
Q ss_pred ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE-EEEecCCCccCCCceeEEEEEeEE
Q 008808 122 KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI-GVVSVPDVEIKGATQQVEVQIKKL 190 (553)
Q Consensus 122 kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~-G~v~~~~~~~~~~t~~~Ei~v~~i 190 (553)
++.=+.|.|+++.|.+++=.... ...+..|++|.|. |.+..- .+.++|.+.+.
T Consensus 23 ~~~~~~l~D~TG~i~~~~W~~~~---------~~~~~~G~vv~i~~~~v~~~-------~g~~ql~i~~~ 76 (82)
T cd04491 23 KVQSGLVGDETGTIRFTLWDEKA---------ADDLEPGDVVRIENAYVREF-------NGRLELSVGKN 76 (82)
T ss_pred EEEEEEEECCCCEEEEEEECchh---------cccCCCCCEEEEEeEEEEec-------CCcEEEEeCCc
Confidence 67778899999999998875420 3569999999999 666432 13577777553
No 197
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=68.26 E-value=10 Score=37.22 Aligned_cols=34 Identities=41% Similarity=0.681 Sum_probs=26.6
Q ss_pred cCCC---CcceeeecHHHHHHHHcCCCCccccccccCCC
Q 008808 513 YGAP---PHGGFGVGLERVVMLFCGLNNIRKTSLYPRDP 548 (553)
Q Consensus 513 ~G~p---P~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p 548 (553)
+|+| |...+.|++|+|+|+.-|.++||. ++-.||
T Consensus 181 ~~i~~~~~v~~~Eidl~~l~~~~~~~~~~~~--~~~~~~ 217 (218)
T cd00496 181 AGIDEEYSGFAFGIGLERLAMLKYGIPDIRL--FYSNDL 217 (218)
T ss_pred CCCCCCceEEEEEecHHHHHHHHhCCcHHHH--HhhcCC
Confidence 5663 346889999999999999999997 444443
No 198
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=66.81 E-value=57 Score=37.46 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=59.5
Q ss_pred ccCCCCCCEEEEEEEEeee--c-cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEEEEEecCC
Q 008808 98 LNGSLKDQEVLIRGRVHTT--R-PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~--R-~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~~~ 173 (553)
+.+...|..|++.|.|.+. + ..++++.=+.+.|+++.|=+++.... .|. +.++.|..|.|.|.|....
T Consensus 54 i~~~~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~~l~l~fFn~~--------~~l~~~~~~G~~v~v~Gk~~~~~ 125 (677)
T COG1200 54 IAEARPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTGVLTLVFFNFP--------AYLKKKLKVGERVIVYGKVKRFK 125 (677)
T ss_pred hhhcCCCceEEEEEEEEeeeccCCCCCceEEEEEecCcEEEEEEEECcc--------HHHHhhCCCCCEEEEEEEEeecc
Confidence 4455689999999999665 4 33556666788899999999988653 133 5699999999999998632
Q ss_pred CccCCCceeEEEEEeEEEEee
Q 008808 174 VEIKGATQQVEVQIKKLYCVS 194 (553)
Q Consensus 174 ~~~~~~t~~~Ei~v~~i~~ls 194 (553)
+..++.--++.+.+
T Consensus 126 -------~~~~~~hpe~~~~~ 139 (677)
T COG1200 126 -------GGLQITHPEYIVND 139 (677)
T ss_pred -------CceEEEcceEEecC
Confidence 24666666665554
No 199
>PRK07211 replication factor A; Reviewed
Probab=65.90 E-value=35 Score=37.78 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=55.4
Q ss_pred CCEEEEEEEEeee-------ccCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEE-EEecCC
Q 008808 104 DQEVLIRGRVHTT-------RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG-VVSVPD 173 (553)
Q Consensus 104 g~~V~v~GrV~~~-------R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G-~v~~~~ 173 (553)
...|.|.|||.++ |..|+ ++.=++|-|.+++|.+.+-.+. .+....|..|++|.|.+ .|..-
T Consensus 171 ~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~IR~TlW~d~-------Ad~~~~le~G~Vv~I~~a~Vre~- 242 (485)
T PRK07211 171 LSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGRVRVTLWDDR-------ADLAEELDAGESVEIVDGYVRER- 242 (485)
T ss_pred CCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCeEEEEEechh-------hhhhccCCCCCEEEEEeeEEEec-
Confidence 4668999999854 23331 6677899999999999887642 11225699999999985 44321
Q ss_pred CccCCCceeEEEEEeEEEEeecCC
Q 008808 174 VEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 174 ~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
.+.+||++..-..+.+|.
T Consensus 243 ------~g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 243 ------DGSLELHVGDRGAVEEVD 260 (485)
T ss_pred ------CCcEEEEECCCceEEECC
Confidence 246899987666666653
No 200
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=63.83 E-value=12 Score=40.30 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=37.2
Q ss_pred EEEEeCC----EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCC-Cccccc
Q 008808 468 FDVFIRG----EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLN-NIRKTS 542 (553)
Q Consensus 468 fdl~~~G----~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~-nIrdv~ 542 (553)
|++|.++ .-||+|+. ++.|..+|. -...|..||++|+|||+.++.... .=.+|.
T Consensus 264 Fe~~~~~~g~~~~i~~GGR----YD~L~~~f~-----------------~~~~pavGfs~~le~l~~~l~~~~~~~~~vl 322 (412)
T PRK00037 264 FEFVTDDLGAQGTVCGGGR----YDGLVEQFG-----------------GPPTPAVGFAIGVERLLLLLEELGEEPVDVY 322 (412)
T ss_pred EEEEECCCCccceeeeccc----hhHHHHHhC-----------------CCCCceEEEEEcHHHHHHHHHhcCCCCCCEE
Confidence 9999863 37889865 445555441 013577799999999998886543 123455
Q ss_pred ccc
Q 008808 543 LYP 545 (553)
Q Consensus 543 ~FP 545 (553)
.+|
T Consensus 323 I~~ 325 (412)
T PRK00037 323 VVP 325 (412)
T ss_pred EEE
Confidence 555
No 201
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=63.45 E-value=92 Score=30.87 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=56.6
Q ss_pred CCCCEEEEEEEEee---eccCCCceEEEEEE-------eCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 102 LKDQEVLIRGRVHT---TRPVGNKLAFVVVR-------ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 102 ~~g~~V~v~GrV~~---~R~~G~kl~Fl~Lr-------d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.....|.|.|||.+ .|.....-.|+.+. +....|.|++.... ...+. +..|+.|.|+|.+..
T Consensus 6 ~~~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~D~i~v~v~~rl-------ae~~~-l~kG~~v~VeGqlrs 77 (219)
T PRK05813 6 MENNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSKDILPVTVSERL-------LAGMD-LKVGTLVIVEGQLRS 77 (219)
T ss_pred hhcCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCccEEEEEEEhhh-------hhhhc-ccCCCEEEEEEEEEE
Confidence 35677899999976 34422233455443 45578999988752 22333 999999999999982
Q ss_pred CCCccCCC-ceeEEEEEeEEEEeecC
Q 008808 172 PDVEIKGA-TQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 172 ~~~~~~~~-t~~~Ei~v~~i~~ls~~ 196 (553)
=.....+. .--+||.+.+|..|++.
T Consensus 78 y~~~~~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 78 YNKFIDGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred eccCCCCcEEEEEEEEEEEEEEccCC
Confidence 11111122 23499999999998764
No 202
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=63.41 E-value=4.6 Score=44.63 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=23.0
Q ss_pred eeEEEeceecCCCCCCCC----CcCcccceeEEe
Q 008808 316 RVFETGPVFRAEDSYTHR----HLCEFTGLDVEM 345 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~r----Hl~EFt~lE~e~ 345 (553)
.+-|||++||||-+ .| -+-||+|.|+|.
T Consensus 167 giaQIGk~FRNEIs--Pr~~l~R~REF~q~EiE~ 198 (539)
T PRK14894 167 GIAQVGKAFRNEIN--PRNFLFRVREFEQMEIEY 198 (539)
T ss_pred eEEeeeccccCccC--CCCceeecccchhheEEE
Confidence 48999999999943 33 368999999986
No 203
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=63.38 E-value=40 Score=34.40 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=47.8
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
..|++-|||.++-....+ .+++|-|+++.|=|..=......+.+ ...|..|-.|.|.|.++.+.
T Consensus 69 ~~v~~VGivr~~e~~~t~-i~y~I~D~tg~id~r~W~~~~~~~~e----~~~l~~~~yVkv~G~Lk~f~ 132 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATN-ITYEIEDGTGQIDVRQWFHDNAESEE----MPALETGTYVKVYGHLKPFQ 132 (265)
T ss_pred EEEEEEEEEEeceecCcc-eEEEEecCcccEEEEEeccccchhhh----CcccccCcEEEeeecccCCC
Confidence 357899999999888745 67899999998766654433222222 34799999999999997653
No 204
>PRK07217 replication factor A; Reviewed
Probab=61.80 E-value=98 Score=32.29 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=63.0
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee--ccCCCceEE-EEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEE
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT--RPVGNKLAF-VVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 168 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~--R~~G~kl~F-l~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~ 168 (553)
-.+|.+|+ ..++-|+|.|+|.++ +.++ .+.. -.|-|++++|-.++=.+.. ...|..|++|.|.+.
T Consensus 72 ~~kI~Di~--~~~~~VsV~aKVl~l~e~~~~-si~qvGllgDETG~IkfT~W~~s~---------~~~leeGd~~rI~na 139 (311)
T PRK07217 72 LVNIADID--EPEQWVDVTAKVVQLWEPSSD-SIAQVGLLGDETGTIKFTKWAKSD---------LPELEEGKSYLLKNV 139 (311)
T ss_pred ceeeeecC--CCCCcEEEEEEEEEecCCCCC-ceEEEEEEEcCCceEEEEEccCCC---------CCcccCCCEEEEEeE
Confidence 36777775 457889999999987 4455 5555 5677888998887765421 235889999999998
Q ss_pred EecCCCccCCCceeEEEEEeEEEEeecCC
Q 008808 169 VSVPDVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 169 v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
++.-- .|.++|.+.+...+....
T Consensus 140 ~v~ey------~G~~~lnlg~~t~I~~~d 162 (311)
T PRK07217 140 VTDEY------QGRFSVKLNRTTSIEELD 162 (311)
T ss_pred EEeeE------CCEEEEEeCCceEEEeCC
Confidence 76532 346899998877776543
No 205
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=59.89 E-value=1.6e+02 Score=28.45 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=33.5
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEE
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKL 190 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i 190 (553)
..|.|++-.+ .....++.|++||.|.|+|.+....- ...+.+.. +||.+.+|
T Consensus 53 ~fi~V~~Wg~------~Ae~va~~L~KGd~V~V~GrL~~r~wedkdG~~rt~~eV~a~~V 106 (186)
T PRK07772 53 LFLRCSIWRQ------AAENVAESLTKGMRVIVTGRLKQRSYETREGEKRTVVELEVDEI 106 (186)
T ss_pred eEEEEEEecH------HHHHHHHhcCCCCEEEEEEEEEcCceECCCCCEEEEEEEEEEEc
Confidence 3567776643 12234567999999999999975532 12233333 88888765
No 206
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=59.87 E-value=1.3e+02 Score=28.45 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=55.3
Q ss_pred CCCCEEEEEEEEe--eeccCCCc--eEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 102 LKDQEVLIRGRVH--TTRPVGNK--LAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 102 ~~g~~V~v~GrV~--~~R~~G~k--l~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
..|+.|+|.|.|. ++...+.. +.| +|.|+..+|.|....- .. ..++.|.-|-++|.+...+
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~~~v~V~Y~Gi---lP-------DlFrEG~gVVveG~~~~~g---- 119 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAGGSVTVTYEGI---LP-------DLFREGQGIVAQGVLEEGN---- 119 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCCeEEEEEEccc---CC-------ccccCCCeEEEEEEECCCC----
Confidence 5799999999998 66555433 465 7889999998887643 11 2467799999999986322
Q ss_pred CCceeEEEEEeEEEEeecCCCC--CCccc
Q 008808 178 GATQQVEVQIKKLYCVSRAAKT--PITIE 204 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~ls~~~~~--P~~~~ 204 (553)
.++++ +||.+|... |-.+.
T Consensus 120 ------~F~A~--~vLAKhdekYmPpEv~ 140 (160)
T PRK13165 120 ------HIEAK--EVLAKHDENYTPPEVE 140 (160)
T ss_pred ------eEEEE--EEEecCCCCCCCHHHH
Confidence 34444 568898765 64333
No 207
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=59.53 E-value=40 Score=32.98 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=45.4
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.|.+-|||.++..+- .-.|++|.|+++.|-|-.=..+.. ....++.+..+-.|.|.|.++.
T Consensus 68 ~V~fVGvvrni~~~t-tn~~~~iEDGTG~Ievr~W~~~~~----~~e~~~d~~~~~yvkV~G~lk~ 128 (258)
T COG5235 68 NVQFVGVVRNIKTST-TNSMFVIEDGTGSIEVRFWPGNSY----EEEQCKDLEEQNYVKVNGSLKT 128 (258)
T ss_pred eEEEEEEEEeeeecc-cceEEEEecCCceEEEEecCCCch----HHHhccccccccEEEEecceee
Confidence 488999999999886 447899999999988876543211 1233456777789999998764
No 208
>PRK04036 DNA polymerase II small subunit; Validated
Probab=59.32 E-value=35 Score=38.08 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=47.3
Q ss_pred CCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.++.++|-|-|..+|.....=..+.|-|.+++|+++...+. +...+....|-.|.+|.|.|++..
T Consensus 152 ~~~~~~viG~v~~~~~~~~g~~~~~LED~sgrv~l~~~~~~----~~~~~~~~~lvtg~vv~v~G~~~~ 216 (504)
T PRK04036 152 GGEEVSIIGMVSDIRSTKNGHKIVELEDTTGTFPVLIMKDR----EDLAELADELLLDEVIGVEGTLSG 216 (504)
T ss_pred CCceEEEEEEEEEeecccCCceEEEEECCCCeEEEEeecch----hhhhhhhhcccCceEEEEEEEEcC
Confidence 67889999999999854322124789999999999986431 122233456888999999998753
No 209
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=59.21 E-value=27 Score=39.86 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccCC-------C-CCccceee-cCCC-CceecccC--hhhHhhhcccCCC----
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------E-GGSAVFRL-DYKG-QSACLAQS--PQLHKQMSICGDF---- 314 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-------e-gga~~F~v-~~~~-~~~~L~~S--Pql~lk~li~~g~---- 314 (553)
..++.+.+|+.|...||.||-|-.|++... + .+.....+ |-.. ..-+||.| |.|-+ .+....
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~--~l~~N~~~~~ 476 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLK--TLGHNKDAPK 476 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHH--HHHHhhcCCC
Confidence 345566789999999999999999975310 0 00011222 2221 22346655 23322 222222
Q ss_pred -ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHH
Q 008808 315 -GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFV 363 (553)
Q Consensus 315 -~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~ 363 (553)
-|+||||.||-.... ..+...|-+.|=+-++.. .++.++-.+++.++.
T Consensus 477 p~klFEiG~V~~~~~~-~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~ 526 (597)
T PLN02265 477 PIKLFEVSDVVLLDES-KDVGARNSRRLAALYCGTTSGFEVIHGLVDRIME 526 (597)
T ss_pred CeeEEEeEeEEecCCc-ccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHH
Confidence 389999999954321 111111333332222211 157777666666663
No 210
>PRK00036 primosomal replication protein N; Reviewed
Probab=56.35 E-value=39 Score=29.64 Aligned_cols=53 Identities=9% Similarity=0.173 Sum_probs=38.5
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
..||+++... +.+....++.|+-|.|+|.+.... ....++=||++.|..+.+.
T Consensus 47 ~~i~ava~G~-------~a~~~~~l~~Gs~v~v~GFLa~~~----~~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 47 LTISAVALGD-------LALLLADTPLGTEMQVQGFLAPAR----KDSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEEhh-------HHHHhcccCCCCEEEEEEEEEECC----CCCCcEEEEhHHeEEcccc
Confidence 4677777642 445556799999999999998632 1234699999999887443
No 211
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=56.24 E-value=1.7e+02 Score=27.08 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=38.1
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEeecC
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
-+.|++-.+ ........|+.||-|.|+|.+....- ...|.+. .+||.+.+|.+|...
T Consensus 55 w~~V~~wg~------~Ae~v~~~l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~r 113 (148)
T PRK08182 55 WAPVELWHR------DAEHWARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYR 113 (148)
T ss_pred EEEEEEEhH------HHHHHHHhcCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCCc
Confidence 466766643 11234567999999999999875532 2234333 399999999987643
No 212
>PLN02734 glycyl-tRNA synthetase
Probab=55.82 E-value=4 Score=46.79 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=23.8
Q ss_pred eeEEEeceecCCCCCCCC----CcCcccceeEEeccc
Q 008808 316 RVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIK 348 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~r----Hl~EFt~lE~e~a~~ 348 (553)
-+-|||++||||=+ .| -+-||||.|+|. |.
T Consensus 277 ~~AQIGk~FRNEIs--PR~gl~R~REF~qaEiE~-Fv 310 (684)
T PLN02734 277 AAAQIGQAFRNEIS--PRQGLLRVREFTLAEIEH-FV 310 (684)
T ss_pred eeeeccHhhhcccC--cccceeeechhhhhhhhe-ec
Confidence 47899999999953 33 368999999985 54
No 213
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=54.02 E-value=60 Score=35.22 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=49.2
Q ss_pred CCEEEEEEEEeee--ccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 104 DQEVLIRGRVHTT--RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 104 g~~V~v~GrV~~~--R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
...+.|.|+|... +.-| ...|+.+.|+.+.|=|++.... +++-..+..|.+||.|.+.|.++.
T Consensus 266 ~~~~~v~g~v~~~p~~ieG-ghv~v~i~d~~G~I~~~A~ept----k~fr~~a~~L~pGD~i~~~G~~~~ 330 (421)
T COG1571 266 YSKYRVVGRVEAEPRAIEG-GHVVVEITDGEGEIGAVAFEPT----KEFRELARKLIPGDEITVYGSVKP 330 (421)
T ss_pred ccceEEEEEEecccEEeeC-CEEEEEecCCCceEEEEEeccc----ccchHHHHhcCCCCEEEEecCccc
Confidence 3457899988774 3456 7899999999999999988652 344456788999999999998853
No 214
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=53.84 E-value=1.5e+02 Score=27.95 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=55.9
Q ss_pred CCCCEEEEEEEEe--eeccCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 102 LKDQEVLIRGRVH--TTRPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 102 ~~g~~V~v~GrV~--~~R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
..|+.++|.|.|. ++...+. .+.| +|.|+..+|.|....-. . ..++.|.-|-++|.+...+
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gil---P-------DlFrEG~gVVveG~~~~~g---- 119 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEGSVTVSYEGIL---P-------DLFREGQGVVVQGTLEKGN---- 119 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCcEEEEEEeccC---C-------ccccCCCeEEEEEEECCCC----
Confidence 4799999999998 6654432 4565 88999999988877531 1 2467799999999985432
Q ss_pred CCceeEEEEEeEEEEeecCCCC--CCcccc
Q 008808 178 GATQQVEVQIKKLYCVSRAAKT--PITIED 205 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~ls~~~~~--P~~~~d 205 (553)
-++++ +||.+|... |-.+.+
T Consensus 120 ------~F~A~--evLAKhdekYmPpEv~~ 141 (159)
T PRK13150 120 ------HVLAH--EVLAKHDENYTPPEVEK 141 (159)
T ss_pred ------EEEEe--EEEeCCCCCCCCHHHHH
Confidence 34444 568899765 644443
No 215
>PRK07218 replication factor A; Provisional
Probab=53.74 E-value=70 Score=34.95 Aligned_cols=82 Identities=20% Similarity=0.129 Sum_probs=53.5
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeec-----cCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEE
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTR-----PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R-----~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (553)
-.+|++|.+. ++.|.|.|||-++- ..|+ .+.=+.|-|.+++|.+++=.. ..|..||+|.
T Consensus 58 ~~kI~Di~~~--~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~Ir~tlW~~------------~~l~~Gdvv~ 123 (423)
T PRK07218 58 SKDIKELSTD--DKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGTISYTAWKD------------FGLSPGDTVT 123 (423)
T ss_pred CccHhhCCCC--CceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCeEEEEEECC------------CCCCCCCEEE
Confidence 3667777643 57899999999882 1121 555566667777777666542 1399999999
Q ss_pred EEEEEecCCCccCCCceeEEEEEeEEEEe
Q 008808 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 165 V~G~v~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
|.+...+.- .+.++|.+.+-..|
T Consensus 124 I~na~vre~------~g~~el~ig~~t~I 146 (423)
T PRK07218 124 IGNAGVREW------DGRPELNIGESTTV 146 (423)
T ss_pred EeccEeecc------CCceEEeccCcceE
Confidence 998665432 23578887544333
No 216
>PRK08402 replication factor A; Reviewed
Probab=53.27 E-value=70 Score=34.09 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=56.3
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee---c----cCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCce
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT---R----PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~---R----~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esi 162 (553)
..+|++|.+ ..+.|.+.|||.++ | ..|+ ++.=++|-|+++++.+++=... ..++...|..||+
T Consensus 62 ~~kI~dl~~--g~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~ir~TlW~~~------a~~~~~~l~~Gdv 133 (355)
T PRK08402 62 LMHISDLVP--GMRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGRARVVLWDAK------VAKYYNKINVGDV 133 (355)
T ss_pred ccCHHHccC--CCceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCeEEEEEechh------hhhhcccCCCCCE
Confidence 356777753 23689999999986 3 2342 4555899999999987765431 1122346999999
Q ss_pred EEEEE-EEecCCCccCCCceeEEEEEeEEEEe
Q 008808 163 VDVIG-VVSVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 163 V~V~G-~v~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
|.|.| .|..- -.|.+||++.+-..+
T Consensus 134 i~I~~a~V~e~------~~G~~eLsvg~~s~i 159 (355)
T PRK08402 134 IKVIDAQVRES------LSGLPELHINFRARI 159 (355)
T ss_pred EEEECCEEeec------CCCcEEEEECCCceE
Confidence 99986 44321 123468888554433
No 217
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=51.87 E-value=2.2e+02 Score=27.02 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=29.0
Q ss_pred HHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeE----EEEeecC
Q 008808 153 FVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKK----LYCVSRA 196 (553)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~----i~~ls~~ 196 (553)
..+.|++|+.|.|+|.+....- ...+.+.. +||.+.. +..|.+.
T Consensus 68 ~~~~LkKG~~V~VeGrL~~r~w~dkdG~~r~~~eIiv~~~~~~l~~l~~~ 117 (166)
T PRK06341 68 AEQYLKKGAKVYIEGQLQTRKWTDQSGVERYSTEVVLQGFNSTLTMLDGR 117 (166)
T ss_pred HHHhcCCCCEEEEEEEEEeCcEECCCCCEEEEEEEEEEecccceEEcccC
Confidence 3467999999999999875431 22343333 8888865 4666543
No 218
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=51.83 E-value=30 Score=27.91 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=33.7
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~ 166 (553)
.|.|+|.++..+| +|+++ +.+.+.+.+..++ ++.. ..++.|+.|.+.
T Consensus 7 ~v~g~V~si~d~G---~~v~~--g~~gv~Gfl~~~~--~~~~-----~~~~~Gq~v~~~ 53 (74)
T cd05694 7 VLSGCVSSVEDHG---YILDI--GIPGTTGFLPKKD--AGNF-----SKLKVGQLLLCV 53 (74)
T ss_pred EEEEEEEEEeCCE---EEEEe--CCCCcEEEEEHHH--CCcc-----cccCCCCEEEEE
Confidence 3899999999999 89999 2223777777652 2221 568899987665
No 219
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.57 E-value=24 Score=42.93 Aligned_cols=38 Identities=16% Similarity=0.411 Sum_probs=31.8
Q ss_pred CCCCEEEEEEEEeeecc-----CCCceEEEEEEeCCeEEEEEe
Q 008808 102 LKDQEVLIRGRVHTTRP-----VGNKLAFVVVRERVSTVQCLA 139 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R~-----~G~kl~Fl~Lrd~~~~iQvv~ 139 (553)
..|..|++.|.|.++|. +|..++|+.|.|.++.+.+++
T Consensus 979 ~~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~ie~vi 1021 (1022)
T TIGR00594 979 PNDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGSIEVVV 1021 (1022)
T ss_pred cCCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCcEEEEe
Confidence 35788999999987654 355699999999999999987
No 220
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=51.10 E-value=36 Score=33.98 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee---cCCCCceecccChhhHhhhcccCCCceeEEEeceecCCC
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL---DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v---~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~ 328 (553)
++|.+.+-+||.++|-..|.+-.|+... ...-.|.. +.| ++++|-+.+. ...|+-..-+|.|.-+
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~d--DptllFtnAGM~~F-kp~f~G~~~p---------~~~r~~~~QkCiR~~D 69 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPRD--DPTLLFTNAGMNQF-KPIFLGEVPP---------PANRLVNSQKCIRAGD 69 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCCC--CCchheeccchhhh-hHHhcCCCCC---------CCCceeeeeeceecCC
Confidence 3567778899999999999876665311 00112211 001 2223332221 2357777778888643
Q ss_pred C----CCCCCcCcccceeEEeccccCH
Q 008808 329 S----YTHRHLCEFTGLDVEMEIKKHY 351 (553)
Q Consensus 329 ~----~t~rHl~EFt~lE~e~a~~~~~ 351 (553)
. .|.||++=|.||-- .+|. ||
T Consensus 70 ienVG~t~rHhTfFEMLGN-fSFg-dY 94 (232)
T cd00673 70 IDNVGKTGRHHTFFEMLGN-FSFG-DY 94 (232)
T ss_pred hhhccccccchhhhhhhcc-cchh-hh
Confidence 2 48899999999853 4665 45
No 221
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=49.90 E-value=20 Score=38.41 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=30.0
Q ss_pred EEEEEeCC---EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcC-CCCcceeeecHHHHHHH
Q 008808 467 SFDVFIRG---EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYG-APPHGGFGVGLERVVML 531 (553)
Q Consensus 467 ~fdl~~~G---~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~ 531 (553)
-|++|.+| ..||+|+. |+.|..+| -.| --|.-||+||+|||+.+
T Consensus 323 VFe~~~~~~~~~~I~~GGR----YD~Li~~f-----------------g~~~~~pAvGfai~~drl~~~ 370 (373)
T PRK12295 323 VFEIRAAGNGDPPLAGGGR----YDGLLTRL-----------------GAGEPIPAVGFSIWLDRLAAL 370 (373)
T ss_pred EEEEEECCCCCCcccCCcC----HHHHHHHh-----------------CCCCCCCeeEEEEcHHHHHhh
Confidence 38999854 46999954 55565544 111 35678999999998643
No 222
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=49.15 E-value=3.7e+02 Score=34.21 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=50.2
Q ss_pred EEeccccCCCCCCEEEEEEEEeee--c--cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEE
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTT--R--PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 168 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~--R--~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~ 168 (553)
..+.++. ..+..|+|.|.|..+ | ..|+.+.=+.|.|.+..|-|....+.. +..+....|+.|+.|.|+|.
T Consensus 227 ~~~~~i~--~~~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~~~----~~~~~~~~~~~g~~v~~~g~ 300 (1437)
T PRK00448 227 TPMKEIN--EEERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSRDK----EDLKKFDEIKKGDWVKVRGS 300 (1437)
T ss_pred ccHHHhh--ccCCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEecCc----chhHHHhcCCCCCEEEEEEE
Confidence 4444443 345789999999887 2 345455557788988877766665321 11234467999999999999
Q ss_pred EecC
Q 008808 169 VSVP 172 (553)
Q Consensus 169 v~~~ 172 (553)
|...
T Consensus 301 ~~~d 304 (1437)
T PRK00448 301 VQND 304 (1437)
T ss_pred Eecc
Confidence 8754
No 223
>PRK06386 replication factor A; Reviewed
Probab=48.93 E-value=1.9e+02 Score=30.89 Aligned_cols=90 Identities=10% Similarity=0.059 Sum_probs=52.2
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCC-eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEe
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV-STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~-~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~ 170 (553)
..+|++|.+ .+.-|.|.|+|..+=. + .++ ++++ ++||..+-.++. ..-.+..|...|..|++|.|.+..+
T Consensus 107 ~~KI~DL~~--g~~~v~V~akVle~~e---~--e~~-~~g~~~~v~sg~lgDeT-GrIr~TlW~~~l~eGd~v~i~na~v 177 (358)
T PRK06386 107 LVKIRDLSL--VTPYVSVIGKITGITK---K--EYD-SDGTSKIVYQGYIEDDT-ARVRISSFGKPLEDNRFVRIENARV 177 (358)
T ss_pred ccEeEeccC--CCCceEEEEEEEEccC---c--eEe-cCCCccEEEEEEEEcCC-CeEEEEEccccccCCCEEEEeeeEE
Confidence 346776643 2456788888865411 1 123 2322 444444333321 1112233555689999999999775
Q ss_pred cCCCccCCCceeEEEEEeEEEEeecC
Q 008808 171 VPDVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 171 ~~~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
.-- .+.+||++.+...+.+.
T Consensus 178 ~e~------~G~~el~v~~~t~I~~~ 197 (358)
T PRK06386 178 SQY------NGYIEISVGNKSVIKEV 197 (358)
T ss_pred Ecc------CCeEEEEeCCeEEEEEC
Confidence 432 35799999888777665
No 224
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=47.23 E-value=23 Score=42.51 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=43.6
Q ss_pred CcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008808 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKT 541 (553)
Q Consensus 462 ~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv 541 (553)
..+.--||+.++|+||.- -.+-+| ..|++. -|..+-+--|+|||.|.+-|.+||-|+
T Consensus 125 ga~glgwevw~~gmeitq-----ftyfqq-----~gg~~~-------------~~~~~eitygler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 125 GAWGLGWEVWLDGMEITQ-----FTYFQQ-----AGGKPL-------------DPISGEITYGIERIAMYLQKVNHFKDI 181 (1000)
T ss_pred cccccccEEEECCeeeee-----eeeehh-----cCCeec-------------cccceeeeccHHHHHHHHhCCCeeeee
Confidence 456778999999999953 112111 123321 477888999999999999999999997
Q ss_pred ccc
Q 008808 542 SLY 544 (553)
Q Consensus 542 ~~F 544 (553)
..-
T Consensus 182 ~~~ 184 (1000)
T PRK14908 182 AWN 184 (1000)
T ss_pred ecC
Confidence 654
No 225
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=46.61 E-value=16 Score=36.86 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=41.0
Q ss_pred CCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH-cCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCC
Q 008808 459 HDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA-CGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNN 537 (553)
Q Consensus 459 ~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~-~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~n 537 (553)
|.=..+.--+|+.++|+||.-= + + |.. .|++ . -|.++=+--|+|||.|.+-|.+|
T Consensus 116 PtLGAwGlGWEVWldGMEITQf-T----Y------FQQvGGi~------------~-~pv~~EITYGLERiamylQ~vdn 171 (284)
T PF02091_consen 116 PTLGAWGLGWEVWLDGMEITQF-T----Y------FQQVGGID------------C-KPVSVEITYGLERIAMYLQGVDN 171 (284)
T ss_dssp TTTTEEEEEEEEEETTCEEEEE-E----E------EEEETTEE--------------SS--EEEEEEHHHHHHHHCT-SS
T ss_pred CcccccccccEEEECCEEEEEe-e----e------eeeeCCcc------------c-cccceehhhhHHHHHHHHhCCCe
Confidence 3344577889999999999631 0 0 011 1222 0 37788899999999999999999
Q ss_pred cccccc
Q 008808 538 IRKTSL 543 (553)
Q Consensus 538 Irdv~~ 543 (553)
|-|+..
T Consensus 172 v~dl~w 177 (284)
T PF02091_consen 172 VYDLIW 177 (284)
T ss_dssp GGGSEE
T ss_pred eEeeee
Confidence 999764
No 226
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=46.38 E-value=1.7e+02 Score=26.20 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=39.8
Q ss_pred CCEEEEEEEEeeeccC-CCceEEEE-----EEe-----CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 104 DQEVLIRGRVHTTRPV-GNKLAFVV-----VRE-----RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 104 g~~V~v~GrV~~~R~~-G~kl~Fl~-----Lrd-----~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
++.+++.|+|.+.... +....|.. ... ..++|++.+..+.. ..+..||.+.++|.+..+
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~Gd~i~~~g~l~~~ 144 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQ----------PRLQPGDRIRVRGKLKPP 144 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEeccccc----------cccCCCCEEEEEEEEecC
Confidence 8899999999887443 32332332 111 23567777665521 158999999999999876
Q ss_pred CC
Q 008808 173 DV 174 (553)
Q Consensus 173 ~~ 174 (553)
..
T Consensus 145 ~~ 146 (176)
T PF13567_consen 145 SG 146 (176)
T ss_pred CC
Confidence 53
No 227
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=46.10 E-value=82 Score=27.14 Aligned_cols=86 Identities=14% Similarity=0.240 Sum_probs=48.0
Q ss_pred EEEEEEEEeee--c---cCCCceEEEEEEeCC------eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC
Q 008808 106 EVLIRGRVHTT--R---PVGNKLAFVVVRERV------STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (553)
Q Consensus 106 ~V~v~GrV~~~--R---~~G~kl~Fl~Lrd~~------~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~ 174 (553)
.+.+.|-|... | ..|=..|=+.|...+ ..=|+-+.-.--..+++...|..+|..||.|.|.|.+.....
T Consensus 6 rl~L~g~vak~~~r~~sPsGIphc~f~Lehrs~q~Eag~~RQv~~~mpv~vsG~qa~~lt~~i~~Gs~i~v~GFla~~~~ 85 (103)
T COG2965 6 RLSLSGTVAKVPVRRYSPSGIPHCQFVLEHRSWQEEAGFQRQVWCEMPVRVSGRQAEELTQSITVGSYILVVGFLACHKR 85 (103)
T ss_pred eEEEEEEeeccceeeeCCCCCeeEEEEEeecchhhhCCcceeEEEEccEEeechhhhhhhhccccccEEEEEEEEEeecc
Confidence 34555555442 2 334455555665433 233444443211123455567788999999999999976432
Q ss_pred ccCCCceeEEEEEeEEEEe
Q 008808 175 EIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 175 ~~~~~t~~~Ei~v~~i~~l 193 (553)
++.-..+-|+...|+.+
T Consensus 86 --~sg~~~lvlha~qi~~i 102 (103)
T COG2965 86 --RSGLSKLVLHAEQIEFI 102 (103)
T ss_pred --cCCccEEEEEeeEEEec
Confidence 12233577777776653
No 228
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=45.60 E-value=48 Score=25.72 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=34.7
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchH-HHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~-~~~~~~~l~~esiV~V~ 166 (553)
.+.|+|.++...| +|+.|-.+ +.+.+.... ++.. ..+....++.||.|.+.
T Consensus 3 ~v~g~V~~v~~~G---v~V~l~~~---~~G~v~~s~--l~~~~~~~~~~~~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG---VFVTLGRG---VDARVRVSE--LSDSYLKDWKKRFKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc---EEEEeCCC---CEEEEEHHH--CCchhhcCHhhccCCCCEEEEE
Confidence 3799999999988 89999653 777776542 2221 22234458889877764
No 229
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=44.78 E-value=35 Score=38.24 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=15.9
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHH
Q 008808 18 SQSISKKAAKKEAAKKAKEERRKEAE 43 (553)
Q Consensus 18 ~~~~sk~~~kk~~k~~~k~~k~a~~~ 43 (553)
...+|-.+.||..|++.|+++|++++
T Consensus 404 ~~~~~~~e~Kk~~kK~kK~~~k~~~~ 429 (517)
T PF12569_consen 404 NENMSAAERKKAKKKAKKAAKKAKKE 429 (517)
T ss_pred cccCChHHHHHHHHHHHHHHHHHhHH
Confidence 34566666677666666665555443
No 230
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=44.28 E-value=1.7e+02 Score=23.79 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=31.5
Q ss_pred EEEEEeeeccCCCceEEEEEEeCC-----eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 109 IRGRVHTTRPVGNKLAFVVVRERV-----STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~~-----~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
|.|-|......+..-.|+ |+|.. .+-..++-... . ...+..||.|.|+|+|..-
T Consensus 2 v~GvVTa~~~~~~~~Gff-iQd~~~d~~~~ts~gifV~~~--------~-~~~~~~Gd~V~vtG~v~ey 60 (78)
T cd04486 2 VEGVVTAVFSGGGLGGFY-IQDEDGDGDPATSEGIFVYTG--------S-GADVAVGDLVRVTGTVTEY 60 (78)
T ss_pred eEEEEEEEcCCCCcCEEE-EEcCCCCCCCcccceEEEecC--------C-CCCCCCCCEEEEEEEEEee
Confidence 678888876642122566 66641 12222222110 0 2468999999999999753
No 231
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=43.96 E-value=39 Score=27.02 Aligned_cols=51 Identities=8% Similarity=0.048 Sum_probs=36.3
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcch---HHHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSK---EMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~---~~~~~~~~l~~esiV~V~ 166 (553)
.|.|.|.++-..| +|+.|.++ |.+.+...+ .+. ...++...++.|+.|.+.
T Consensus 3 ~V~g~V~~i~~~g---~~V~l~~~---i~G~i~~~~--ls~~~~~~~~~~~~~~vG~~v~~k 56 (73)
T cd05703 3 EVTGFVNNVSKEF---VWLTISPD---VKGRIPLLD--LSDDVSVLEHPEKKFPIGQALKAK 56 (73)
T ss_pred EEEEEEEEEeCCE---EEEEeCCC---cEEEEEHHH--cCCccccccCHHHhCCCCCEEEEE
Confidence 4789999998888 89999553 888887642 221 123456779999977664
No 232
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=41.29 E-value=19 Score=36.22 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=42.1
Q ss_pred CcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH-cCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccc
Q 008808 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA-CGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRK 540 (553)
Q Consensus 462 ~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~-~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrd 540 (553)
..+.--+|+.++|+||.-= .+ |.. -|++. -|..+=+--|+|||.|.+-|.+||-|
T Consensus 120 GAwGLGWEVWldGMEITQF-----TY------FQQvGGi~~-------------~pv~~EiTYGLERiamylQ~vd~v~d 175 (279)
T cd00733 120 GAWGLGWEVWLDGMEVTQF-----TY------FQQVGGIPC-------------KPISVEITYGLERIAMYLQGVDNVYD 175 (279)
T ss_pred cccccccEEEECCeeeeee-----ee------eeeeCCeec-------------cccceeeehhHHHHHHHHhCCCceec
Confidence 3456779999999999631 11 111 23321 47788899999999999999999988
Q ss_pred ccc
Q 008808 541 TSL 543 (553)
Q Consensus 541 v~~ 543 (553)
+..
T Consensus 176 l~w 178 (279)
T cd00733 176 IEW 178 (279)
T ss_pred ccc
Confidence 754
No 233
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=41.11 E-value=5.6 Score=43.27 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=0.0
Q ss_pred EEeceecCCCC--CCCCCcCcccceeEE
Q 008808 319 ETGPVFRAEDS--YTHRHLCEFTGLDVE 344 (553)
Q Consensus 319 eIg~~FR~E~~--~t~rHl~EFt~lE~e 344 (553)
+||++||||-| .+.-+-.||||.|+|
T Consensus 214 qiG~~fRNEISpRsGLlRvrEF~maEIE 241 (599)
T KOG2298|consen 214 QIGKSFRNEISPRSGLLRVREFTMAEIE 241 (599)
T ss_pred HhchHhhhccCcccCceeEEEeehHHhh
No 234
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=40.98 E-value=1.7e+02 Score=23.89 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=37.4
Q ss_pred EEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 110 RGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 110 ~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+=|.+.....|..+. ++|.|+.+ .||+.+... ...+|...|..|.+..+.+.-+.+
T Consensus 8 r~W~~~~~~~~~~~~-miL~De~G~~I~a~i~~~------~~~~f~~~L~eg~vy~is~f~v~~ 64 (86)
T cd04480 8 RLWDVYNNASGESLE-MVLVDEKGNRIHATIPKR------LAAKFRPLLKEGKWYTISNFEVAP 64 (86)
T ss_pred EEEcCcCCCCCcEEE-EEEEcCCCCEEEEEECHH------HHHhhhhhceeCCEEEEeeEEEEc
Confidence 444444444564444 45666655 999999865 245677889999999999754444
No 235
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=39.89 E-value=20 Score=36.06 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=42.3
Q ss_pred CcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008808 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKT 541 (553)
Q Consensus 462 ~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv 541 (553)
..+.--+|+.++|+||.-= .+-+| --|++. -|..+=+--|+|||.|.+-|.+||-|+
T Consensus 124 GAwGlGWEVWldGMEITQF-----TYFQQ-----vGGi~~-------------~pv~~EITYGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 124 GAWGLGWEVWLDGMEVTQF-----TYFQQ-----VGGIEC-------------KPVTGEITYGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred cccccceEEEECCeeeeee-----eeeee-----eCCeec-------------cccceeeehhHHHHHHHHhCCCceeee
Confidence 3466779999999999531 11111 123331 477888999999999999999999987
Q ss_pred cc
Q 008808 542 SL 543 (553)
Q Consensus 542 ~~ 543 (553)
..
T Consensus 181 ~w 182 (283)
T PRK09348 181 VW 182 (283)
T ss_pred ec
Confidence 64
No 236
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=38.95 E-value=36 Score=26.78 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhHhCCcEEE
Q 008808 249 RIQSQVGNIFRQFLLSENFVEI 270 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV 270 (553)
+.|.+|++.||+||...|=|+|
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAV 23 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEE
Confidence 4688999999999999997766
No 237
>PRK07218 replication factor A; Provisional
Probab=38.93 E-value=2.7e+02 Score=30.52 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=49.2
Q ss_pred CCEEEEEEEEeee--c-----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCcc
Q 008808 104 DQEVLIRGRVHTT--R-----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (553)
Q Consensus 104 g~~V~v~GrV~~~--R-----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~ 176 (553)
+.-|.|.|+|.++ | ...+.+.=..|-|.+++|.+++=... ..|..|++|.|.+..+.--
T Consensus 172 ~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~Ir~tlW~~~-----------~~l~~Gd~v~I~na~v~e~--- 237 (423)
T PRK07218 172 DRGVNVEARVLELEHREIDGRDGETTILSGVLADETGRLPFTDWDPL-----------PEIEIGASIRIEDAYVREF--- 237 (423)
T ss_pred CCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCceEEEEEeccc-----------ccCCCCCEEEEeeeEEecc---
Confidence 3458999999977 1 11113444466777777777665431 2489999999999776542
Q ss_pred CCCceeEEEEEeEEEEeec
Q 008808 177 KGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 177 ~~~t~~~Ei~v~~i~~ls~ 195 (553)
.+.+||++.+-.-|..
T Consensus 238 ---~G~~elnv~~~t~I~~ 253 (423)
T PRK07218 238 ---RGVPSVNVSEFTTVEA 253 (423)
T ss_pred ---CCeEEEEECCceEEEE
Confidence 3468999976554444
No 238
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=38.81 E-value=2.3e+02 Score=35.32 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=54.4
Q ss_pred CCCEEEEEEEEeee--c--cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCC
Q 008808 103 KDQEVLIRGRVHTT--R--PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (553)
Q Consensus 103 ~g~~V~v~GrV~~~--R--~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (553)
.+..|.|.|.|..+ | ..|+.+.-+.|.|.+..|-|....... ++ .+....|+.|+.|.|.|.|....-
T Consensus 6 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s~~~k~f~~~~---~~-~~~~~~~~~g~~~~~~g~~~~d~~---- 77 (1213)
T TIGR01405 6 EENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDSLILKKFLKSE---ED-PEKFDGIKIGKWVRARGKIELDNF---- 77 (1213)
T ss_pred cCCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCCEEEEEecccc---cc-hHHHhhcCCCcEEEEEEEEeccCC----
Confidence 45689999999876 2 346566668899998888887766421 11 233467999999999999875531
Q ss_pred CceeEEEEEeEEEE
Q 008808 179 ATQQVEVQIKKLYC 192 (553)
Q Consensus 179 ~t~~~Ei~v~~i~~ 192 (553)
..++.+.+..|..
T Consensus 78 -~~~~~~~~~~~~~ 90 (1213)
T TIGR01405 78 -SRDLQMIIKDIEE 90 (1213)
T ss_pred -CCceEEEeeeeee
Confidence 1245555555544
No 239
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=37.36 E-value=90 Score=36.45 Aligned_cols=71 Identities=21% Similarity=0.224 Sum_probs=41.1
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee-cCCC-CceecccC--hhhHhhhcccC------CCceeEEEec
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL-DYKG-QSACLAQS--PQLHKQMSICG------DFGRVFETGP 322 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v-~~~~-~~~~L~~S--Pql~lk~li~~------g~~rVfeIg~ 322 (553)
.+.+.+|++|...||.||-|-.+++... -...+..+ |-.. ..-+||.| |.|-. .+.- .--|+||||+
T Consensus 402 ~~~~~ir~~L~~~Gf~Evitysf~s~~~-~~~~~i~l~NPiS~e~s~lR~SLlpgLL~--~~~~N~~r~~~~~rlFEiG~ 478 (704)
T CHL00192 402 NTRDKIRSYLRNLGLTELIHYSLVKQES-FSKNEIKLKNPLIKDYSTLRSSLLPGLIE--AVQENLKQGNSTLEGFEIGH 478 (704)
T ss_pred HHHHHHHHHHHhCCCceEecccccChhh-cCCCcEEEeCCCchHHHHHHHHHHHHHHH--HHHHHHhcCCCCEeEEEeee
Confidence 3455679999999999999999975421 11112222 2222 23456655 23321 1111 1238999999
Q ss_pred eecC
Q 008808 323 VFRA 326 (553)
Q Consensus 323 ~FR~ 326 (553)
||-.
T Consensus 479 Vf~~ 482 (704)
T CHL00192 479 VFNL 482 (704)
T ss_pred eEcC
Confidence 9943
No 240
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.14 E-value=52 Score=36.07 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeecc---CCCCCcc-----ceeecCCC------------CceecccChhhHhhh
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAG---SSEGGSA-----VFRLDYKG------------QSACLAQSPQLHKQM 308 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~---~~egga~-----~F~v~~~~------------~~~~L~~SPql~lk~ 308 (553)
++..+++.+||.=...+||.||-||.|-.. ...|+-. -|+++--. .-+-.+.-|--|.++
T Consensus 193 ~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~reL 272 (560)
T KOG1637|consen 193 RIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYREL 272 (560)
T ss_pred hHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhhccCccCCCccccccccCCccHhhC
Confidence 677889999999999999999999988432 1223322 45443211 111111222222221
Q ss_pred cccCCCceeEEEeceecCCCC---CCCCCcCcccceeEEeccccCHHHHHHHHHHHH
Q 008808 309 SICGDFGRVFETGPVFRAEDS---YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (553)
Q Consensus 309 li~~g~~rVfeIg~~FR~E~~---~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll 362 (553)
--|.=.+|..-|||-| .+.+|+-+|.|=|.-.. . .-+++-+.+..++
T Consensus 273 -----PlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIF-C-t~~Qi~~Eik~~l 322 (560)
T KOG1637|consen 273 -----PLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIF-C-TPDQVKEEIKGCL 322 (560)
T ss_pred -----CccccCcceeeeccccccccccceeeeecccCceEE-e-cCccHHHHHHHHH
Confidence 1244567889999965 35779999999887543 2 2244444444443
No 241
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=36.74 E-value=1.8e+02 Score=22.06 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=36.0
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeE-EEEEeecCCCCcchHHHHHHhcCCCCceEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVST-VQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~-iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V 165 (553)
.+.|+|..+...| ...++.++-+++. |-+.+.... .. .-.|..|+-|.+
T Consensus 6 ~l~g~V~~ie~~g-~~~~v~~~~~~~~~l~a~it~~~------~~--~L~L~~G~~V~~ 55 (64)
T PF03459_consen 6 QLPGTVESIENLG-SEVEVTLDLGGGETLTARITPES------AE--ELGLKPGDEVYA 55 (64)
T ss_dssp EEEEEEEEEEESS-SEEEEEEEETTSEEEEEEEEHHH------HH--HCT-STT-EEEE
T ss_pred EEEEEEEEEEECC-CeEEEEEEECCCCEEEEEEcHHH------HH--HcCCCCCCEEEE
Confidence 5899999999999 8899999988877 888887541 11 124888987765
No 242
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=35.20 E-value=1.7e+02 Score=27.80 Aligned_cols=56 Identities=14% Similarity=0.032 Sum_probs=37.4
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCcee-EEEEEe---EEEEeec
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIK---KLYCVSR 195 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~-~Ei~v~---~i~~ls~ 195 (553)
-+-|++-.+ ....+.+.|+.|+-|.|+|.+....-...|.+.. +||.+. .+.+|+.
T Consensus 54 w~~Vv~fgk------~Ae~v~~~l~KGs~V~VeGrLr~~~y~kdG~~r~~~eVvvd~~g~v~~L~~ 113 (172)
T PRK05733 54 WHRVSLFGK------VAEIAGEYLRKGSQVYIEGKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGG 113 (172)
T ss_pred EEEEEEehH------HHHHHHHHhCCCCEEEEEEEEEeCcEecCCEEEEEEEEEEeecCeEEECcC
Confidence 466666543 1123456799999999999987654332343333 899988 7888864
No 243
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=35.16 E-value=2.1e+02 Score=27.33 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=37.6
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEe---EEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIK---KLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~---~i~~ls~~ 196 (553)
.-+.|++-.+ ......+.|++||-|.|+|.+....- ...+.+.. +||.+. ++.+|.+.
T Consensus 54 ~w~~V~~fgk------~Ae~~~~~L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 54 EWHRVVLFGK------LAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred EEEEEEEehh------HHHHHHHhcCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 3466666643 12224567999999999999975532 22343333 888877 78888754
No 244
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=35.15 E-value=60 Score=25.20 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=32.8
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcch-HHHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSK-EMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~-~~~~~~~~l~~esiV~V~ 166 (553)
.|.|.|.++...| +|++|-. .+.+++...+ .+. ........++.||.|.+.
T Consensus 3 iv~g~V~~i~~~~---~~v~l~~---~~~g~l~~~e--~~~~~~~~~~~~~~~Gd~i~~~ 54 (70)
T cd05687 3 IVKGTVVSVDDDE---VLVDIGY---KSEGIIPISE--FSDDPIENGEDEVKVGDEVEVY 54 (70)
T ss_pred EEEEEEEEEeCCE---EEEEeCC---CceEEEEHHH--hCccccCCHhHcCCCCCEEEEE
Confidence 3689999998877 8999943 3577777542 111 111123458899987765
No 245
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=33.89 E-value=80 Score=24.44 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=34.9
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchH-HHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~-~~~~~~~l~~esiV~V~ 166 (553)
.+.|+|.++...| +|+.|-++ +++++..+. .+.+ ..+....++.|+.|.+.
T Consensus 3 ~~~g~V~~v~~~G---~~V~l~~~---~~gli~~s~--l~~~~~~~~~~~~~~G~~i~v~ 54 (70)
T cd05698 3 KTHGTIVKVKPNG---CIVSFYNN---VKGFLPKSE--LSEAFIKDPEEHFRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEEecCc---EEEEECCC---CEEEEEHHH--cChhhcCCHHHcccCCCEEEEE
Confidence 3789999999988 89999542 888888652 2211 11123458889988776
No 246
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=33.18 E-value=28 Score=35.26 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=42.5
Q ss_pred CcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH-cCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccc
Q 008808 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA-CGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRK 540 (553)
Q Consensus 462 ~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~-~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrd 540 (553)
..+.--+|+.++|+||.-= .+ |.. -|++ . -|..+=+--|+|||.|.+-|.+||-|
T Consensus 121 GAwGlGWEVWldGMEITQF-----TY------FQQvGGi~------------~-~pv~~EITYGLERiaMylQ~vd~v~d 176 (293)
T TIGR00388 121 GAWGLGWEVWLDGMEVTQF-----TY------FQQVGGLE------------C-KPVSVEITYGLERLAMYIQGVENVYD 176 (293)
T ss_pred cccccccEEEECCeeeeee-----ee------eeeeCCee------------c-cccceeeehhHHHHHHHHhCCCeeee
Confidence 3466779999999999531 11 111 2332 1 36678899999999999999999998
Q ss_pred cccc
Q 008808 541 TSLY 544 (553)
Q Consensus 541 v~~F 544 (553)
...=
T Consensus 177 l~w~ 180 (293)
T TIGR00388 177 LEWS 180 (293)
T ss_pred eeec
Confidence 7654
No 247
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=32.54 E-value=1e+02 Score=24.08 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=33.6
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH-HHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM-VRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~-~~~~~~l~~esiV~V~ 166 (553)
.+.|.|..+...| +|+.|-.+ +++++...+ .+... .+....++.||.|.+.
T Consensus 6 iv~g~V~~v~~~g---i~v~l~~~---~~g~v~~s~--l~~~~~~~~~~~~~~Gd~v~~~ 57 (73)
T cd05706 6 ILPGRVTKVNDRY---VLVQLGNK---VTGPSFITD--ALDDYSEALPYKFKKNDIVRAC 57 (73)
T ss_pred EEEEEEEEEeCCe---EEEEeCCC---cEEEEEhhh--ccCccccccccccCCCCEEEEE
Confidence 4689999998888 89998553 888888653 22111 1223457888876653
No 248
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=32.48 E-value=4.1e+02 Score=24.58 Aligned_cols=85 Identities=18% Similarity=0.091 Sum_probs=47.2
Q ss_pred cCCCCCCEEEEEEEEeeeccCCCce-EEEEEEeCCeE--------EEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 99 NGSLKDQEVLIRGRVHTTRPVGNKL-AFVVVRERVST--------VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 99 ~~~~~g~~V~v~GrV~~~R~~G~kl-~Fl~Lrd~~~~--------iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
...+.|+.|+|.|.|.=.-..+.++ -|+-+.+-+.- =|+|.-.-...+ ..-..-+-|.|+|++
T Consensus 50 v~~L~Gk~V~i~Gf~vPle~~~~~v~eFlLvP~~gaC~h~PpPppNqiV~V~~~~~~--------~~~~~~~pv~V~G~l 121 (146)
T PF11736_consen 50 VKALDGKQVRIPGFMVPLEQEEGKVTEFLLVPYFGACIHVPPPPPNQIVHVKMPKPI--------PVDSLYDPVWVEGTL 121 (146)
T ss_pred hHHhCCCEEEEeeEEEeeccCCCcEEEEEEeccCCcCcCCCCCCCccEEEEEeCCCc--------cccccceeEEEEEEE
Confidence 3578899999999999987654344 67777764421 133332211100 011124689999998
Q ss_pred ecCCCccCCCceeEEEEEeEEE
Q 008808 170 SVPDVEIKGATQQVEVQIKKLY 191 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~ 191 (553)
........-.+..+.+.+.+|.
T Consensus 122 ~~~~~~~~~~~~~Y~m~a~~v~ 143 (146)
T PF11736_consen 122 KVERSSSDLGTSGYSMDADSVE 143 (146)
T ss_pred EeccccchheeEEEEEEeeEEE
Confidence 7654221112223555555543
No 249
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=31.99 E-value=96 Score=24.33 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=34.8
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchH-HHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~-~~~~~~~l~~esiV~V~ 166 (553)
.+.|.|..+...| +|++|.+.. .+.+++..+. .+.. .......++.||.|.|.
T Consensus 6 ~~~g~V~~v~~~g---~~v~l~~~~-~~~gll~~s~--l~~~~~~~~~~~~~~Gd~v~vk 59 (76)
T cd04452 6 LVVVTVKSIADMG---AYVSLLEYG-NIEGMILLSE--LSRRRIRSIRKLVKVGRKEVVK 59 (76)
T ss_pred EEEEEEEEEEccE---EEEEEcCCC-CeEEEEEhHH--cCCcccCCHHHeeCCCCEEEEE
Confidence 4689999999988 899997632 2567776542 2211 11223458999988775
No 250
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=31.19 E-value=61 Score=30.36 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=16.7
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHH
Q 008808 20 SISKKAAKKEAAKKAKEERRKEAE 43 (553)
Q Consensus 20 ~~sk~~~kk~~k~~~k~~k~a~~~ 43 (553)
.++|+++|+..|+.+|++|+.+++
T Consensus 62 ll~k~e~K~~~K~~KK~~K~~~K~ 85 (155)
T PF08496_consen 62 LLDKKELKAWEKAEKKEEKAKAKA 85 (155)
T ss_pred hcCHHHHHHHHHHHHHHHHHHhhh
Confidence 467888888877777776655544
No 251
>COG3689 Predicted membrane protein [Function unknown]
Probab=30.94 E-value=1.3e+02 Score=30.56 Aligned_cols=92 Identities=11% Similarity=0.151 Sum_probs=58.1
Q ss_pred CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCC
Q 008808 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179 (553)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~ 179 (553)
++..|++|.+.|.|.+=-..+++-. +..| -+-+=|++++...+.--++- --..++..+.|.|+|++....-+. ..
T Consensus 171 def~Gk~Ie~tGFVy~~~~~~~N~l-flaR--FgiicC~ADa~vygl~v~~~-~~~~y~ndtWltvkGtl~~e~~~~-~~ 245 (271)
T COG3689 171 DEFAGKKIEFTGFVYNDESFPKNYL-FLAR--FGIICCAADAGVYGLLVELD-NQTDYKNDTWLTVKGTLSSEYLSD-FK 245 (271)
T ss_pred hhhcCceEEEEEEEECCCCCCccee-ehhh--hheeeeeccceeEEEEEEcc-ccccCCCCceEEEEeEEEeeecCc-hh
Confidence 4678999999999999666664433 3333 45566666654322110110 123589999999999987543221 11
Q ss_pred ceeEEEEEeEEEEeecC
Q 008808 180 TQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 180 t~~~Ei~v~~i~~ls~~ 196 (553)
....-|+|.+++++.+.
T Consensus 246 ~~ipvi~v~sv~~I~kP 262 (271)
T COG3689 246 KRIPVIEVDSVEVIPKP 262 (271)
T ss_pred hcCcEEEeeeeeecCCC
Confidence 23378899999988664
No 252
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=30.90 E-value=1.2e+02 Score=25.94 Aligned_cols=29 Identities=10% Similarity=0.259 Sum_probs=22.1
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecC
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVK 142 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~ 142 (553)
.|-|+|.++...| +|+.|-.+ +.+.+...
T Consensus 6 vV~G~V~~v~~~g---l~v~L~~g---~~G~v~~s 34 (100)
T cd05693 6 LVLGQVKEITKLD---LVISLPNG---LTGYVPIT 34 (100)
T ss_pred EEEEEEEEEcCCC---EEEECCCC---cEEEEEHH
Confidence 5789999999988 88988543 56666654
No 253
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=30.44 E-value=1.2e+02 Score=24.30 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=33.5
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchH----HHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE----MVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~----~~~~~~~l~~esiV~V~ 166 (553)
.|.|.|.++...| +|++|.. .+.+.+...+ .|.. ..++.+.++.|+.|.+.
T Consensus 6 ~V~g~V~~i~~~G---~fV~l~~---~v~G~v~~~~--ls~~~~~~~~~~~~~~~~G~~v~~k 60 (74)
T cd05705 6 LLRGYVSSVTKQG---VFFRLSS---SIVGRVLFQN--VTKYFVSDPSLYNKYLPEGKLLTAK 60 (74)
T ss_pred EEEEEEEEEeCCc---EEEEeCC---CCEEEEEHHH--ccCccccChhhHhcccCCCCEEEEE
Confidence 5789999999888 8999953 4666666431 1111 12244668999977654
No 254
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=30.11 E-value=28 Score=35.82 Aligned_cols=40 Identities=35% Similarity=0.665 Sum_probs=28.0
Q ss_pred EEEEEeC--CEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHH
Q 008808 467 SFDVFIR--GEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERV 528 (553)
Q Consensus 467 ~fdl~~~--G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL 528 (553)
-|+++.+ |..|++|+. ++.|.++| | .-.|..||+|++|||
T Consensus 270 vFe~~~~~~~~~ia~GGR----YD~L~~~f---g---------------~~~~AvGfai~ld~L 311 (311)
T PF13393_consen 270 VFEVYAPGRGSPIAGGGR----YDNLLEQF---G---------------KPIPAVGFAIGLDRL 311 (311)
T ss_dssp EEEEEETTSSSESEEEEE----ETTHHHHT---T---------------SS-EEEEEEEEHHHH
T ss_pred EEEEEEcCCCceEecccC----hhHHHHHh---C---------------CCCceEEEEEEeccC
Confidence 4999997 478999976 33344433 1 134788999999997
No 255
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=29.85 E-value=2.5e+02 Score=21.41 Aligned_cols=49 Identities=16% Similarity=0.040 Sum_probs=33.4
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V 165 (553)
.+.|+|.++...| .++-+.|+-+++ +|.+.+.... . ..-.|..|+-|.+
T Consensus 8 ~l~g~I~~i~~~g-~~~~v~l~~~~~~~l~a~i~~~~-------~-~~l~l~~G~~v~~ 57 (69)
T TIGR00638 8 QLKGKVVAIEDGD-VNAEVDLLLGGGTKLTAVITLES-------V-AELGLKPGKEVYA 57 (69)
T ss_pred EEEEEEEEEEECC-CeEEEEEEECCCCEEEEEecHHH-------H-hhCCCCCCCEEEE
Confidence 5899999998877 666677776555 7777776531 0 1125788886654
No 256
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=28.33 E-value=24 Score=42.29 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=46.3
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCC-----CceeEEEeceecCC
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD-----FGRVFETGPVFRAE 327 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g-----~~rVfeIg~~FR~E 327 (553)
.|-+.+-+||.++|-.-|..=-+++ --..+++|..|.-.-.|-.+..| ..|+=..-||.|..
T Consensus 60 eiR~~fl~FF~~~gH~~v~s~pvvp-------------rw~dDllft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~n 126 (902)
T TIGR03683 60 EMREAFLSFFEKHGHTRIKRYPVVA-------------RWRDDVYLTIASIADFQPWVTSGLVPPPANPLVISQPCIRLN 126 (902)
T ss_pred HHHHHHHHHHHhCCCEEeCCcCcCc-------------CCCCCeeEeecchhhhhHhhcCCCCCCCCCCceecccccccc
Confidence 4445567899999966664332221 01112555555544444444322 36777888999986
Q ss_pred CC----CCCCCcCccccee
Q 008808 328 DS----YTHRHLCEFTGLD 342 (553)
Q Consensus 328 ~~----~t~rHl~EFt~lE 342 (553)
+. .|.||++=|.||=
T Consensus 127 DldnVG~t~rH~TfFEMlG 145 (902)
T TIGR03683 127 DIDNVGRTGRHLTCFEMMA 145 (902)
T ss_pred ccccccCCCCcchhhhhcc
Confidence 43 4889998888884
No 257
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=28.31 E-value=2.7e+02 Score=21.15 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=37.0
Q ss_pred EEEEEEeeeccCCCceEEEEEEeC--CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRER--VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~--~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~ 166 (553)
.+.|+|..++..| -.+.++|... +..|.+-++... ....+..|+.|.+.
T Consensus 6 ~l~a~V~~v~~~G-~~vRlEl~~~~~~~~iEvel~~~~---------~~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVG-PEVRLELKRLDDGEPIEVELPRER---------RQLGLQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecC-CeEEEEEEECCCCCEEEEEeCHhH---------HhcCCCCCCEEEEE
Confidence 4789999999999 7899999654 568888887651 12356779988764
No 258
>PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding.
Probab=27.65 E-value=3e+02 Score=23.00 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=44.2
Q ss_pred EEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC-CccCCCceeEEEEEeEEEEeecCCCC
Q 008808 127 VVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD-VEIKGATQQVEVQIKKLYCVSRAAKT 199 (553)
Q Consensus 127 ~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~-~~~~~~t~~~Ei~v~~i~~ls~~~~~ 199 (553)
+|-| .|.+||+.+... ...+|...|..|++..+.-..+.+. ...+.+....-|....-+.+.+|...
T Consensus 3 vL~De~G~~I~A~I~~~------~~~~f~~~l~Eg~~y~i~~F~V~~~~~~yr~t~h~y~I~f~~~T~V~~~~~~ 71 (95)
T PF02721_consen 3 VLVDEKGDKIQATIPKE------LVDKFKDSLKEGSWYTISNFTVSPNSGSYRPTDHKYKINFMPNTKVTEIDPP 71 (95)
T ss_pred EEEecCCCEEEEEECHH------HHHHHHhhcccCCEEEeEeEEEEeCCCceeccCCCEEEEECCcCeEEECCCC
Confidence 4555 467999999753 3445778899999999998655443 23333344577777666667776544
No 259
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=27.39 E-value=4e+02 Score=22.85 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=40.0
Q ss_pred EEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEee
Q 008808 124 AFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVS 194 (553)
Q Consensus 124 ~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls 194 (553)
-=+.|.||...+|+|+.... .+++. .+.|..|++|.+.-.....-.. ++--|.+.++.+|.
T Consensus 40 yR~~lSDG~~~~~amLatql----n~lv~-~g~l~~~siirl~~y~~n~v~~-----~k~iiiil~leVv~ 100 (101)
T PF04057_consen 40 YRLVLSDGVHSIQAMLATQL----NHLVE-SGELQKGSIIRLKQYTCNTVKN-----GKKIIIILDLEVVQ 100 (101)
T ss_dssp EEEEEESSSEEEEEEESGGG----HHHHH-TTSSSTT-EEEEEEEEEEESTT-----SSEEEEEEEEEEEE
T ss_pred EEEEEEChHHHHHHHhHHHh----HHHHh-cCCcccCCEEEEeEEEEeeccC-----CCEEEEEEeeEEEe
Confidence 34789999999999998752 12221 2469999999999876543210 12346677777764
No 260
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=27.07 E-value=1.1e+02 Score=23.60 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=33.4
Q ss_pred EEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchH-HHHHHhcCCCCceEEEE
Q 008808 109 IRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (553)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~-~~~~~~~l~~esiV~V~ 166 (553)
+.|.|..+...| +|+.|..+ +.+++..+. .+.. ..+....++.||.|.+.
T Consensus 4 v~g~V~~v~~~g---~~v~l~~~---~~g~i~~~~--~~~~~~~~~~~~~~~Gd~v~~~ 54 (73)
T cd05691 4 VTGKVTEVDAKG---ATVKLGDG---VEGFLRAAE--LSRDRVEDATERFKVGDEVEAK 54 (73)
T ss_pred EEEEEEEEECCe---EEEEeCCC---CEEEEEHHH--CCCccccCHHHccCCCCEEEEE
Confidence 689999999888 88998653 677776542 1211 11233458899987765
No 261
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=27.03 E-value=1e+02 Score=23.35 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=32.8
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchH-HHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~-~~~~~~~l~~esiV~V~ 166 (553)
.+.|+|..+...| +|+.|-++ +.+++...+ .+.. +......++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G---~~v~l~~~---~~g~l~~~~--l~~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd04472 3 IYEGKVVKIKDFG---AFVEILPG---KDGLVHISE--LSDERVEKVEDVLKVGDEVKVK 54 (68)
T ss_pred EEEEEEEEEEEeE---EEEEeCCC---CEEEEEhHH--cCCccccCHHHccCCCCEEEEE
Confidence 4689999999988 89998654 666666542 1111 11112357888888775
No 262
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=26.82 E-value=2.2e+02 Score=22.84 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=33.3
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~ 166 (553)
.|.|+|..+...+ +++++.. ..++.+....-. .....+....++.||.|.+.
T Consensus 9 iV~G~V~~v~~~~---~~V~i~~---~~~g~l~~~~~~-~~~~~~~~~~~~~GD~i~~~ 60 (82)
T cd04454 9 IVIGIVTEVNSRF---WKVDILS---RGTARLEDSSAT-EKDKKEIRKSLQPGDLILAK 60 (82)
T ss_pred EEEEEEEEEcCCE---EEEEeCC---CceEEeechhcc-CcchHHHHhcCCCCCEEEEE
Confidence 3689999998876 7888843 367777665211 11122344569999977654
No 263
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=26.64 E-value=3.1e+02 Score=24.75 Aligned_cols=73 Identities=11% Similarity=0.036 Sum_probs=47.6
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee----ccCCC-ceEEEEEEeCCe----EEEEEeecCCCCcchHHHHHHhcCCCCc
Q 008808 91 EWTVVGALNGSLKDQEVLIRGRVHTT----RPVGN-KLAFVVVRERVS----TVQCLATVKPDSVSKEMVRFVRSLSNES 161 (553)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~----R~~G~-kl~Fl~Lrd~~~----~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (553)
.|..|+++.. ..++.|-|-|=|... |..|+ -.+-+.|-|.+. .|.|.+..... .....+..||
T Consensus 2 ~f~~i~~~~~-~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~-------~~LP~v~~GD 73 (138)
T cd04497 2 KYTPLSSALK-ESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNE-------ESLPIVKVGD 73 (138)
T ss_pred ceEeHHHHHh-ccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCCh-------hhCCCCCCCC
Confidence 3566666654 678889999988876 33443 245567777643 47777766531 1234478999
Q ss_pred eEEEEEEEec
Q 008808 162 IVDVIGVVSV 171 (553)
Q Consensus 162 iV~V~G~v~~ 171 (553)
+|.+.+.-..
T Consensus 74 VIll~~~kv~ 83 (138)
T cd04497 74 IILLRRVKIQ 83 (138)
T ss_pred EEEEEEEEEE
Confidence 9999996443
No 264
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=26.60 E-value=86 Score=26.02 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=37.8
Q ss_pred CCCCCEEEEEEEEeeeccCCCceEEEEEE---eCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVR---ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lr---d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
...|+-|.|+..+.... -..-+.+- +..+.+++.+.....+ .+-.|...++.||.|.|.|-.
T Consensus 30 ~~pGQ~v~v~~~~~~~~----~~R~yS~~s~~~~~~~~~~~ik~~~~G---~~S~~L~~l~~Gd~v~i~gP~ 94 (99)
T PF00970_consen 30 FKPGQFVSVRVPINGKQ----VSRPYSPASSPDDKGYLEFAIKRYPNG---RVSRYLHQLKPGDEVEIRGPY 94 (99)
T ss_dssp STTT-EEEEEEEETTEE----EEEEEEBCSSTTSSSEEEEEEEECTTS---HHHHHHHTSCTTSEEEEEEEE
T ss_pred cCcceEEEEEEccCCcc----eecceeEeeecCCCCcEEEEEEeccCC---HHHHHHHhCCCCCEEEEEEcc
Confidence 45699999998833210 01112222 2345788888775322 345677889999999999854
No 265
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=26.48 E-value=1.8e+02 Score=34.44 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=55.9
Q ss_pred HHHHHHHHhHhCCcEEEecceeeccC-CC--C-Cccceee-cCCC-CceecccChhhHhhhcc----cCCC--ceeEEEe
Q 008808 254 VGNIFRQFLLSENFVEIHTPKLIAGS-SE--G-GSAVFRL-DYKG-QSACLAQSPQLHKQMSI----CGDF--GRVFETG 321 (553)
Q Consensus 254 i~~~iR~fl~~~gF~EV~TP~l~~~~-~e--g-ga~~F~v-~~~~-~~~~L~~SPql~lk~li----~~g~--~rVfeIg 321 (553)
+.+.+|++|...||.||-|-.+++.. .. + ......+ |-.. .--+||.|-=.-|=..+ .-+. -|+||||
T Consensus 492 ~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEiG 571 (791)
T PRK00629 492 LLRRLRRALAALGYQEVITYSFVSPEDAKLFGLNPEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFEIG 571 (791)
T ss_pred HHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCCCCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeee
Confidence 34567999999999999999886431 00 0 0011222 2222 22356655322211111 1222 3899999
Q ss_pred ceecCCCCCCCCCcCcccceeEEecc-----------ccCHHHHHHHHHHHHHHH
Q 008808 322 PVFRAEDSYTHRHLCEFTGLDVEMEI-----------KKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 322 ~~FR~E~~~t~rHl~EFt~lE~e~a~-----------~~~~~~~m~~~e~ll~~i 365 (553)
+||.... + ...|-+.|=+-++. ..++.++...++.++..+
T Consensus 572 ~Vf~~~~--~--~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l 622 (791)
T PRK00629 572 RVFLPDG--D--LPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEAL 622 (791)
T ss_pred eeeCCCC--C--CCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHc
Confidence 9996421 0 01122222221111 026888888888887543
No 266
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=26.35 E-value=5.5e+02 Score=24.10 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=54.1
Q ss_pred CCCCEEEEEEEEe--eeccCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 102 LKDQEVLIRGRVH--TTRPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 102 ~~g~~V~v~GrV~--~~R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
..++.++|.|.|. ++...+. .+.| .+.|+...|.|....- .. ...+.|.=|-++|.+. .+
T Consensus 49 ~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gi---lP-------DlFrEGqgVVaeG~~~-~g---- 112 (155)
T PRK13159 49 AGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNAATQVEYTGI---LP-------DLFRDNQSVIANGRMQ-GG---- 112 (155)
T ss_pred ccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCcEEEEEEccC---CC-------ccccCCCeEEEEEEEc-CC----
Confidence 3468899999998 6655543 3565 6779989998887642 11 2467789999999885 11
Q ss_pred CCceeEEEEEeEEEEeecCCCC--CCcccc
Q 008808 178 GATQQVEVQIKKLYCVSRAAKT--PITIED 205 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~ls~~~~~--P~~~~d 205 (553)
.++++ +||.+|... |-.+.+
T Consensus 113 ------~F~A~--~vLAKHde~YmP~Ev~~ 134 (155)
T PRK13159 113 ------RFVAN--EVLAKHDETYMPKELKD 134 (155)
T ss_pred ------EEEEe--EEEecCCCcCCCHHHHH
Confidence 34444 568898765 654443
No 267
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=26.28 E-value=1.3e+02 Score=23.32 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=32.8
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcch-HHHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSK-EMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~-~~~~~~~~l~~esiV~V~ 166 (553)
.+.|+|.++...| +|+.|-.+ +-+++...+ .+. ...+....++.||.|.+.
T Consensus 3 ~v~g~V~~v~~~G---v~V~l~~~---v~g~i~~~~--l~~~~~~~~~~~~~~Gd~i~~~ 54 (69)
T cd05697 3 VVKGTIRKLRPSG---IFVKLSDH---IKGLVPPMH--LADVRLKHPEKKFKPGLKVKCR 54 (69)
T ss_pred EEEEEEEEEeccE---EEEEecCC---cEEEEEHHH--CCCccccCHHHcCCCCCEEEEE
Confidence 3789999999988 89999643 666765431 111 111223458888877764
No 268
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=25.50 E-value=29 Score=41.53 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=47.0
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCC-----CceeEEEeceecCC
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD-----FGRVFETGPVFRAE 327 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g-----~~rVfeIg~~FR~E 327 (553)
.|-+.+-+||.++|-.-|..=-+++ -...+++|..|.-.-.|-.+..| ..|+-..-||.|..
T Consensus 63 eiR~~Fl~FF~~~gH~~v~s~pvvp-------------rw~dDllft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~n 129 (900)
T PRK13902 63 EMREKFLSFFEKHGHTRIERYPVVA-------------RWRDDVYLTIASIYDFQPWVTSGLVPPPANPLVISQPCIRLN 129 (900)
T ss_pred HHHHHHHHHHHhCCCEEcCCcCcCC-------------CCCCCeeeeecchhhhhHHhcCCCCCCCCCCceecccccchh
Confidence 3445567899999966554322221 11122555555544444444422 36888888999986
Q ss_pred CC----CCCCCcCccccee
Q 008808 328 DS----YTHRHLCEFTGLD 342 (553)
Q Consensus 328 ~~----~t~rHl~EFt~lE 342 (553)
+. .|.||++=|.||=
T Consensus 130 DldnVG~t~rH~T~FEMlG 148 (900)
T PRK13902 130 DIDNVGRTGRHLTSFEMMA 148 (900)
T ss_pred hhhhccccCCchhhhhhcc
Confidence 43 4889998888884
No 269
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=25.46 E-value=6.5e+02 Score=31.32 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=43.8
Q ss_pred EEEEEEEEeee----ccCCCceEEEEEEeCCeE--EEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 106 EVLIRGRVHTT----RPVGNKLAFVVVRERVST--VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 106 ~V~v~GrV~~~----R~~G~kl~Fl~Lrd~~~~--iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
.|.|.|-|-.+ ..+|+++.=+.+.|.+.+ +|..+...+ -.+....|+.|+.|.++|.|...
T Consensus 241 ~v~v~G~IF~~e~~~~ksGr~l~~i~vTD~t~Sl~~k~f~~~~e------d~~~~~~ik~g~wvk~~g~v~~d 307 (1444)
T COG2176 241 RVKVEGYIFKIEIKELKSGRTLLNIKVTDYTSSLILKKFLRDEE------DEKKFDGIKKGMWVKARGNVQLD 307 (1444)
T ss_pred ceEEEEEEEEEeeeecccCcEEEEEEEecCchheeehhhccccc------cHHHHhhcccCcEEEEEEEEEec
Confidence 38999999876 456767777777887764 444444221 13456789999999999999865
No 270
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=25.43 E-value=35 Score=38.49 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=14.8
Q ss_pred cceeeecHHHHHHHHcC
Q 008808 518 HGGFGVGLERVVMLFCG 534 (553)
Q Consensus 518 ~~G~GiGidRLvm~l~g 534 (553)
|.||++|+|||++++..
T Consensus 442 ~~Gfa~gieRli~~l~e 458 (563)
T TIGR00418 442 HRAILGSIERFIAILLE 458 (563)
T ss_pred EeeccCcHHHHHHHHHH
Confidence 46999999999998864
No 271
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=24.36 E-value=2.2e+02 Score=35.09 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=46.3
Q ss_pred EEEEEEEEeeecc-----CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 106 EVLIRGRVHTTRP-----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 106 ~V~v~GrV~~~R~-----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
.+.+.|=|..+|. .|.+++|+.|-|.++.+-+|+... ...++...+..+.++.|.|.|...
T Consensus 978 ~~~~~~~i~~vr~~~tk~~G~~~~f~tl~D~~g~~e~v~f~~------~~~~~~~~l~~~~~~~v~g~v~~~ 1043 (1139)
T COG0587 978 RVVLAGGIVAVRQRPTKAKGNKMAFLTLEDETGILEVVVFPS------EYERYRRLLLEGRLLIVKGKVQRR 1043 (1139)
T ss_pred eeEEEEEEEEEEEeeccCCCCEEEEEEEecCCCcEEEEEcHH------HHHHHHHHhccCcEEEEEEEEEec
Confidence 4777777777652 355699999999999888887743 344556667778999999999864
No 272
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=24.33 E-value=93 Score=35.98 Aligned_cols=78 Identities=19% Similarity=0.143 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCC----CCCcc-ceee-cCCC-CceecccChhhHhhhcccC------CCce
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EGGSA-VFRL-DYKG-QSACLAQSPQLHKQMSICG------DFGR 316 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~----egga~-~F~v-~~~~-~~~~L~~SPql~lk~li~~------g~~r 316 (553)
..+...+.+|++|...||.||-|-.|++... ..+.. .-.+ |-.. .--+||.|---.|-..+.- .--|
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~ 431 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDEALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVR 431 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCcceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCee
Confidence 3455667799999999999999998864210 00000 1111 1011 1224555533333222221 1258
Q ss_pred eEEEeceecCC
Q 008808 317 VFETGPVFRAE 327 (553)
Q Consensus 317 VfeIg~~FR~E 327 (553)
+||||.||-.+
T Consensus 432 iFEiG~v~~~~ 442 (650)
T COG0072 432 IFEIGDVFVKD 442 (650)
T ss_pred EEEeeeeEecC
Confidence 99999999975
No 273
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=23.86 E-value=1.6e+02 Score=22.96 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=31.3
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchH---HHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE---MVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~---~~~~~~~l~~esiV~V~ 166 (553)
.|.|+|..+...| +|+.|-.+ +++.+...+ .+.. ...-...++.||+|.+.
T Consensus 3 iV~g~V~~i~~~g---i~v~l~~~---i~g~i~~~~--i~~~~~~~~~~~~~~~~Gd~i~~k 56 (70)
T cd05702 3 LVKAKVKSVKPTQ---LNVQLADN---VHGRIHVSE--VFDEWPDGKNPLSKFKIGQKIKAR 56 (70)
T ss_pred EEEEEEEEEECCc---EEEEeCCC---cEEEEEHHH--hccccccccChhHhCCCCCEEEEE
Confidence 4789999998887 88888533 677776542 1110 11113457888877654
No 274
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=23.31 E-value=1.7e+02 Score=34.72 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=53.9
Q ss_pred HHHHHHhHhCCcEEEecceeeccC-C-----CCCccceee-cCCC-CceecccC--hhhHhhhc--ccCCCc--eeEEEe
Q 008808 256 NIFRQFLLSENFVEIHTPKLIAGS-S-----EGGSAVFRL-DYKG-QSACLAQS--PQLHKQMS--ICGDFG--RVFETG 321 (553)
Q Consensus 256 ~~iR~fl~~~gF~EV~TP~l~~~~-~-----egga~~F~v-~~~~-~~~~L~~S--Pql~lk~l--i~~g~~--rVfeIg 321 (553)
+.+|++|...||.||-|-.+++.. . +.......+ |-.. .--+||.| |.|-.-.. ..-+.. |+||||
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG 577 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIG 577 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHhhcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeee
Confidence 357999999999999999996531 0 000001222 2211 22245544 23222110 011233 999999
Q ss_pred ceecCCCCCCCCCcCcccceeEEeccc------------cCHHHHHHHHHHHHHH
Q 008808 322 PVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFVT 364 (553)
Q Consensus 322 ~~FR~E~~~t~rHl~EFt~lE~e~a~~------------~~~~~~m~~~e~ll~~ 364 (553)
+||...+. . ..|.++|=+-++.. .++.++...++.++..
T Consensus 578 ~V~~~~~~-~---~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~ 628 (798)
T TIGR00472 578 KVFAKDGL-G---VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLEL 628 (798)
T ss_pred cccCCCCC-C---cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHH
Confidence 99954221 0 12333332222210 2578888888888753
No 275
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=23.15 E-value=1.6e+02 Score=24.46 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=17.8
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHH
Q 008808 20 SISKKAAKKEAAKKAKEERRKEAE 43 (553)
Q Consensus 20 ~~sk~~~kk~~k~~~k~~k~a~~~ 43 (553)
.+|.++.|++.|.++|.+|...++
T Consensus 33 kl~~kEekrrLkeEkKkAKAeqrA 56 (86)
T PF15437_consen 33 KLSPKEEKRRLKEEKKKAKAEQRA 56 (86)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 678889998888877766655544
No 276
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=22.92 E-value=4.9e+02 Score=24.37 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=44.6
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEe----CC----------eEEEEEeecCCCCcchHHHHHHhcC
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE----RV----------STVQCLATVKPDSVSKEMVRFVRSL 157 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd----~~----------~~iQvv~~~~~~~~~~~~~~~~~~l 157 (553)
+..+.+-.+...|+.|.+-|.|.+++... .-..|.+-+ .. +++=+.++.- ++. ...
T Consensus 22 ~~~v~~~p~~~~G~~VrwGG~I~~v~n~~-~~T~leV~~~PLd~~grP~~~~~s~GRFla~~~gF---LDP------~~y 91 (160)
T PF03843_consen 22 FSQVRANPDAYQGQQVRWGGVIVNVRNLP-DQTELEVVQYPLDSSGRPQTDDPSQGRFLARVPGF---LDP------AIY 91 (160)
T ss_pred HHHHHhChhhcCCCEEEECCEEEEEEECC-CceEEEEEEccCCCCCCcCCCCCCCCEEEEEeCCC---cCH------HHc
Confidence 33443334578899999999999999886 445555542 11 2222222211 111 236
Q ss_pred CCCceEEEEEEEecCC
Q 008808 158 SNESIVDVIGVVSVPD 173 (553)
Q Consensus 158 ~~esiV~V~G~v~~~~ 173 (553)
..|-.|.|.|+|....
T Consensus 92 ~~Gr~vTV~G~v~g~~ 107 (160)
T PF03843_consen 92 APGRLVTVVGTVTGME 107 (160)
T ss_pred CCCCEEEEEEEecceE
Confidence 7899999999997654
No 277
>PRK05807 hypothetical protein; Provisional
Probab=22.81 E-value=1.4e+02 Score=27.09 Aligned_cols=67 Identities=27% Similarity=0.379 Sum_probs=42.7
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHH-HHhcCCCCceEEEEEEEecCCCccCCCceeEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~ 186 (553)
.|.|.|..+...| +|+.| ++ .++++..+. ++...++ ....++.||.|.|. |.... . .+.++|.
T Consensus 8 vv~G~Vt~i~~~G---afV~L-~~---~~Glvhise--is~~~v~~~~~~~kvGd~V~Vk--V~~id----~-~gkI~LS 71 (136)
T PRK05807 8 ILEGTVVNITNFG---AFVEV-EG---KTGLVHISE--VADTYVKDIREHLKEQDKVKVK--VISID----D-NGKISLS 71 (136)
T ss_pred EEEEEEEEEECCe---EEEEE-CC---EEEEEEhhh--cccccccCccccCCCCCEEEEE--EEEEC----C-CCcEEEE
Confidence 5789999999999 89999 32 478887653 2221111 12458999988765 43322 1 3457777
Q ss_pred EeEE
Q 008808 187 IKKL 190 (553)
Q Consensus 187 v~~i 190 (553)
+..+
T Consensus 72 lk~~ 75 (136)
T PRK05807 72 IKQA 75 (136)
T ss_pred EEec
Confidence 7654
No 278
>PRK08582 hypothetical protein; Provisional
Probab=22.66 E-value=1.5e+02 Score=27.14 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=33.5
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHH-HHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~-~~~~~l~~esiV~V~ 166 (553)
.|.|.|..+...| +|+.|-.+ +.+++..++ ++...+ +....++.||.|.|.
T Consensus 8 iv~G~V~~I~~fG---~fV~L~~~---~~GlVhiSe--ls~~~v~~~~~~l~vGD~Vkvk 59 (139)
T PRK08582 8 KLQGKVTGITNFG---AFVELPEG---KTGLVHISE--VADNYVKDINDHLKVGDEVEVK 59 (139)
T ss_pred EEEEEEEEEECCe---EEEEECCC---CEEEEEeec--cCcccccccccccCCCCEEEEE
Confidence 3799999999999 89999543 556665542 221111 122458999988764
No 279
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=22.45 E-value=88 Score=23.05 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=22.0
Q ss_pred HHHHHHHcCCChhcHHHHHHHhhcCCCCc
Q 008808 490 LAERAQACGIDVKTISTYIDSFRYGAPPH 518 (553)
Q Consensus 490 l~~r~~~~g~~~~~~~~yl~a~~~G~pP~ 518 (553)
++.++..+-.-+..+..|+++++-|.||.
T Consensus 3 iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e 31 (45)
T PF03790_consen 3 IKAKIASHPLYPRLLAAYIDCQKVGAPPE 31 (45)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhcCCCHH
Confidence 34445556666677899999999999984
No 280
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=21.74 E-value=52 Score=37.50 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee---cCCCCceecccChhhHhhhcccCCCceeEEEeceecCC-
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL---DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE- 327 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v---~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E- 327 (553)
+.|-+.+-+||.++|-..|.+-.|++.. ...-.|.. +.| +++||-+.+- ...|+=..-+|.|.-
T Consensus 4 ~eiR~~fl~FF~~kgH~~~~s~slvp~~--d~tllftnAGm~~f-k~~f~G~~~p---------~~~r~~~~QkCiR~~D 71 (594)
T PRK01584 4 DELRKKYIDFFKSKGHVEIAGKSLIPEN--DPTVLFTTAGMHPL-VPYLLGEPHP---------SGTRLVDVQKCLRTGD 71 (594)
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcCCCC--CCCeeeeccchhhh-hHHhcCCCCC---------CCCCcccccccccccc
Confidence 4566677889999998888776665411 00112211 001 2223322211 124566667888873
Q ss_pred --CCCCCCCcCcccceeEEeccccCH
Q 008808 328 --DSYTHRHLCEFTGLDVEMEIKKHY 351 (553)
Q Consensus 328 --~~~t~rHl~EFt~lE~e~a~~~~~ 351 (553)
+..|.||++=|.||-= .+|. ||
T Consensus 72 le~VG~~rHhTfFEMlGn-fSfg-dY 95 (594)
T PRK01584 72 IDEVGDLSHLTFFEMLGN-WSLG-AY 95 (594)
T ss_pred ccccCCCcchhHHHhhcc-ccHh-hh
Confidence 4457899888888853 4564 45
No 281
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.64 E-value=1.4e+02 Score=23.36 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=32.6
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~ 166 (553)
.+.|+|.++...| +|+.|.+ ..+.+++...+-. .+........++.||.|.|.
T Consensus 5 ~v~g~V~~i~~~g---~~v~l~~--~~~~g~i~~~~l~-~~~~~~~~~~~~~Gd~v~v~ 57 (77)
T cd05708 5 KIDGTVRRVEDYG---VFIDIDG--TNVSGLCHKSEIS-DNRVADASKLFRVGDKVRAK 57 (77)
T ss_pred EEEEEEEEEEcce---EEEEECC--CCeEEEEEHHHCC-CCccCCHhHeecCCCEEEEE
Confidence 3799999999888 8999864 2356666543210 00011112457899988765
No 282
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=21.60 E-value=60 Score=32.59 Aligned_cols=60 Identities=22% Similarity=0.405 Sum_probs=42.2
Q ss_pred CcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008808 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKT 541 (553)
Q Consensus 462 ~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv 541 (553)
..+.--+|+.++|+||.- -.+-+| --|++- -|-++-+--|+|||.|.+-|.+||-|+
T Consensus 125 GawGlGWEVWldGMEvTQ-----FTYFQQ-----vGGiec-------------~pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 125 GAWGLGWEVWLDGMEVTQ-----FTYFQQ-----VGGLEC-------------KPVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred cccccceeEEEcCeeeee-----eehhhh-----hCCeec-------------cceeeeeehhHHHHHHHHhCccceeEE
Confidence 345677999999999852 122222 123321 355677889999999999999999998
Q ss_pred ccc
Q 008808 542 SLY 544 (553)
Q Consensus 542 ~~F 544 (553)
..-
T Consensus 182 ~W~ 184 (298)
T COG0752 182 EWN 184 (298)
T ss_pred eec
Confidence 654
No 283
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=20.55 E-value=2.5e+02 Score=25.39 Aligned_cols=67 Identities=19% Similarity=0.383 Sum_probs=43.3
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEEEEEecCCCccCCCceeEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~ 186 (553)
.+.|+|..+-.-| +|+.|-.+.. ..+.-+ .+...+++-+ ..|..|+-|.|.= +.... .++++|+
T Consensus 8 ~l~GkItgI~~yG---AFV~l~~g~t---GLVHIS--EIa~~fVkdI~d~L~vG~eV~vKV-l~ide------~GKisLS 72 (129)
T COG1098 8 KLKGKITGITPYG---AFVELEGGKT---GLVHIS--EIADGFVKDIHDHLKVGQEVKVKV-LDIDE------NGKISLS 72 (129)
T ss_pred eEEEEEEeeEecc---eEEEecCCCc---ceEEeh--HhhhhhHHhHHHHhcCCCEEEEEE-Eeecc------CCCccee
Confidence 4789999999999 8999987653 233322 2334455544 5699999888762 22211 3467777
Q ss_pred EeE
Q 008808 187 IKK 189 (553)
Q Consensus 187 v~~ 189 (553)
+..
T Consensus 73 Ir~ 75 (129)
T COG1098 73 IRK 75 (129)
T ss_pred hHH
Confidence 754
No 284
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=20.41 E-value=1.7e+02 Score=21.86 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=32.2
Q ss_pred EEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchH-HHHHHhcCCCCceEEEE
Q 008808 108 LIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (553)
Q Consensus 108 ~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~-~~~~~~~l~~esiV~V~ 166 (553)
.+.|+|..+...| +|+.|.++ +.+++...+ .+.. ..+....++.||.|.|.
T Consensus 3 ~~~g~V~~i~~~G---~fv~l~~~---~~g~~~~~~--l~~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd05685 3 VLEGVVTNVTDFG---AFVDIGVK---QDGLIHISK--MADRFVSHPSDVVSVGDIVEVK 54 (68)
T ss_pred EEEEEEEEEeccc---EEEEcCCC---CEEEEEHHH--CCCccccCHHHhcCCCCEEEEE
Confidence 4789999999888 89999643 666766432 1111 10112347888887765
Done!