Query 008808
Match_columns 553
No_of_seqs 310 out of 1615
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 12:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i7f_A Aspartyl-tRNA synthetas 100.0 6E-123 2E-127 1007.2 50.8 486 53-553 21-548 (548)
2 1eov_A ASPRS, aspartyl-tRNA sy 100.0 7E-114 3E-118 934.5 51.9 476 61-553 2-487 (487)
3 3nem_A Aspartyl-tRNA synthetas 100.0 4E-112 1E-116 908.5 48.8 434 92-553 4-438 (438)
4 3m4p_A Ehasnrs, asparaginyl-tR 100.0 8E-107 3E-111 871.5 43.6 431 88-553 15-456 (456)
5 3bju_A Lysyl-tRNA synthetase; 100.0 1E-106 3E-111 883.6 38.7 444 75-550 23-508 (521)
6 4ex5_A Lysine--tRNA ligase; st 100.0 7E-105 3E-109 864.7 35.7 447 60-548 35-526 (529)
7 1wyd_A Hypothetical aspartyl-t 100.0 9E-104 3E-108 843.4 43.1 424 93-553 5-429 (429)
8 2xgt_A Asparaginyl-tRNA synthe 100.0 1E-103 4E-108 845.0 41.9 422 94-553 2-435 (435)
9 1n9w_A Aspartyl-tRNA synthetas 100.0 7E-103 2E-107 835.0 41.4 418 92-553 2-422 (422)
10 1e1o_A Lysyl-tRNA synthetase, 100.0 4E-103 1E-107 851.7 36.1 436 75-549 31-502 (504)
11 1x54_A Asparaginyl-tRNA synthe 100.0 3E-102 9E-107 833.6 39.1 425 93-553 5-434 (434)
12 3a74_A Lysyl-tRNA synthetase; 100.0 4E-102 1E-106 842.5 36.6 436 75-549 23-492 (493)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 5.5E-97 2E-101 815.3 40.1 421 93-551 5-555 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 1.5E-95 5E-100 806.1 43.6 432 93-552 4-562 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 3.1E-87 1.1E-91 736.1 38.9 430 92-549 12-570 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 4.8E-77 1.6E-81 619.9 25.8 282 238-547 27-343 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 1.4E-68 4.7E-73 546.8 26.0 278 233-552 1-292 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.9 1.4E-26 5E-31 236.0 6.4 148 178-348 22-188 (290)
19 12as_A Asparagine synthetase; 99.9 2.3E-21 7.9E-26 193.9 25.2 273 248-543 5-315 (330)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.7 8.9E-18 3E-22 170.6 12.8 184 252-543 74-275 (288)
21 1b7y_A Phers, protein (phenyla 99.6 9.2E-14 3.1E-18 144.3 19.1 111 252-365 104-244 (350)
22 2rhq_A Phenylalanyl-tRNA synth 99.5 1.1E-13 3.7E-18 141.1 15.1 111 251-365 55-183 (294)
23 3pco_A Phenylalanyl-tRNA synth 99.3 1E-11 3.5E-16 127.5 12.5 106 253-365 111-234 (327)
24 3l4g_A Phenylalanyl-tRNA synth 99.2 6.8E-11 2.3E-15 127.5 11.9 46 314-360 347-393 (508)
25 2du3_A O-phosphoseryl-tRNA syn 98.6 2E-07 6.9E-12 101.0 12.9 48 315-362 206-254 (534)
26 3cmq_A Phenylalanyl-tRNA synth 98.6 9.5E-07 3.2E-11 93.7 17.4 91 254-347 53-164 (415)
27 3od1_A ATP phosphoribosyltrans 98.6 3.8E-06 1.3E-10 88.8 22.0 101 247-348 23-136 (400)
28 3rac_A Histidine-tRNA ligase; 98.6 7.4E-07 2.5E-11 93.4 15.5 116 248-363 37-175 (373)
29 3lc0_A Histidyl-tRNA synthetas 98.6 1.4E-06 4.9E-11 93.7 17.5 99 248-347 43-155 (456)
30 2du7_A O-phosphoseryl-tRNA syn 98.4 2.5E-06 8.4E-11 92.5 15.6 47 315-361 218-265 (549)
31 2odr_B Phosphoseryl-tRNA synth 98.2 2.2E-05 7.7E-10 85.8 17.6 49 314-362 224-273 (648)
32 2odr_D Phosphoseryl-tRNA synth 98.2 2.3E-05 8E-10 85.9 17.6 49 314-362 224-273 (685)
33 2odr_A Phosphoseryl-tRNA synth 98.2 2.4E-05 8.1E-10 85.7 17.6 49 314-362 224-273 (665)
34 2odr_C Phosphoseryl-tRNA synth 98.2 3E-05 1E-09 85.2 17.3 49 314-362 224-273 (701)
35 2dq3_A Seryl-tRNA synthetase; 98.2 6.9E-06 2.4E-10 87.5 12.0 118 246-367 170-308 (425)
36 1evl_A Threonyl-tRNA synthetas 98.1 6E-06 2E-10 87.3 8.7 115 247-364 29-162 (401)
37 1qe0_A Histidyl-tRNA synthetas 98.0 5E-06 1.7E-10 88.2 6.6 102 247-349 15-135 (420)
38 2i4l_A Proline-tRNA ligase; al 98.0 2.3E-05 7.9E-10 84.3 10.7 113 246-361 65-197 (458)
39 1z7m_A ATP phosphoribosyltrans 97.9 4.7E-05 1.6E-09 78.9 11.7 100 247-347 35-149 (344)
40 1wu7_A Histidyl-tRNA synthetas 97.8 6.9E-05 2.4E-09 79.9 11.7 102 247-349 19-133 (434)
41 1nyr_A Threonyl-tRNA synthetas 97.8 3E-05 1E-09 86.9 9.3 116 246-364 269-405 (645)
42 1ses_A Seryl-tRNA synthetase; 97.8 0.00017 5.8E-09 76.6 13.6 113 247-363 165-300 (421)
43 1hc7_A Prolyl-tRNA synthetase; 97.8 0.00011 3.8E-09 79.4 11.9 115 247-362 43-179 (477)
44 2j3l_A Prolyl-tRNA synthetase; 97.8 7.3E-05 2.5E-09 82.6 10.6 113 246-361 45-177 (572)
45 2dq0_A Seryl-tRNA synthetase; 97.8 0.00011 3.8E-09 78.8 11.5 114 247-364 192-326 (455)
46 1h4v_B Histidyl-tRNA synthetas 97.7 8.9E-05 3E-09 78.6 10.3 100 247-347 16-133 (421)
47 3err_A Fusion protein of micro 97.7 0.00023 8E-09 77.7 13.7 116 246-364 273-410 (536)
48 4e51_A Histidine--tRNA ligase; 97.7 6.2E-05 2.1E-09 81.1 8.9 99 247-346 45-161 (467)
49 3net_A Histidyl-tRNA synthetas 97.7 4.3E-05 1.5E-09 82.3 7.4 117 247-364 25-174 (465)
50 1htt_A Histidyl-tRNA synthetas 97.7 0.0001 3.5E-09 78.2 10.0 101 247-348 17-134 (423)
51 3uh0_A Threonyl-tRNA synthetas 97.7 0.00012 4E-09 78.8 10.4 119 247-367 63-203 (460)
52 1nj8_A Proline-tRNA synthetase 97.7 0.00015 5.2E-09 77.9 10.9 116 247-363 37-176 (459)
53 3vbb_A Seryl-tRNA synthetase, 97.6 0.00036 1.2E-08 75.5 13.4 117 246-363 199-346 (522)
54 1qf6_A THRRS, threonyl-tRNA sy 97.6 0.0001 3.4E-09 82.6 9.2 115 246-363 269-402 (642)
55 1wle_A Seryl-tRNA synthetase; 97.6 0.00041 1.4E-08 75.1 13.4 117 247-364 218-357 (501)
56 3lss_A Seryl-tRNA synthetase; 97.6 0.00016 5.5E-09 77.7 9.1 118 246-365 206-346 (484)
57 1nj1_A PROR, proline-tRNA synt 97.5 0.00013 4.4E-09 79.3 8.3 116 247-364 70-209 (501)
58 2cja_A Seryl-tRNA synthetase; 97.5 0.00036 1.2E-08 75.8 10.7 117 246-364 229-395 (522)
59 3a32_A Probable threonyl-tRNA 97.5 0.00026 8.9E-09 76.3 9.3 117 247-365 48-185 (471)
60 3ial_A Prolyl-tRNA synthetase; 97.4 0.00028 9.4E-09 76.7 8.6 119 246-365 53-194 (518)
61 4hvc_A Bifunctional glutamate/ 97.4 0.00039 1.3E-08 75.6 9.8 117 247-364 60-199 (519)
62 3qne_A Seryl-tRNA synthetase, 97.4 0.00026 8.7E-09 76.1 8.1 116 246-363 183-321 (485)
63 4g84_A Histidine--tRNA ligase, 97.3 0.00083 2.8E-08 71.9 11.4 98 247-346 27-137 (464)
64 1usy_A ATP phosphoribosyltrans 97.3 0.00047 1.6E-08 69.0 8.0 88 255-348 7-100 (275)
65 4g85_A Histidine-tRNA ligase, 97.3 0.00087 3E-08 73.0 10.5 99 246-346 79-190 (517)
66 2rhq_B Phenylalanyl-tRNA synth 97.2 0.007 2.4E-07 69.2 17.3 92 253-346 497-601 (795)
67 1ati_A Glycyl-tRNA synthetase; 96.9 0.0019 6.5E-08 70.1 9.2 32 247-278 38-71 (505)
68 3ikl_A DNA polymerase subunit 96.9 0.0029 9.8E-08 67.6 9.9 107 248-363 104-225 (459)
69 3mf2_A BLL0957 protein; aminoa 96.9 0.0017 5.8E-08 66.5 7.5 117 246-365 62-217 (346)
70 2zt5_A Glycyl-tRNA synthetase; 96.5 0.0028 9.5E-08 71.4 6.3 30 248-277 101-131 (693)
71 1ynx_A Replication factor-A pr 96.5 0.014 4.7E-07 50.4 9.4 98 91-197 3-110 (114)
72 1g5h_A Mitochondrial DNA polym 96.2 0.0077 2.6E-07 64.5 7.8 112 248-363 62-215 (454)
73 2k50_A Replication factor A re 96.1 0.017 5.7E-07 49.7 8.2 89 92-195 7-104 (115)
74 3kf6_A Protein STN1; OB fold, 96.0 0.061 2.1E-06 49.2 11.5 80 105-195 48-128 (159)
75 3dm3_A Replication factor A; p 95.8 0.14 4.9E-06 43.3 12.4 89 91-197 4-101 (105)
76 3e0e_A Replication protein A; 95.6 0.17 5.8E-06 42.1 11.8 84 94-197 4-97 (97)
77 3l4g_B Phenylalanyl-tRNA synth 95.1 0.049 1.7E-06 60.2 8.9 109 253-362 395-519 (589)
78 1nnx_A Protein YGIW; structura 95.1 0.09 3.1E-06 44.9 8.6 81 94-194 27-108 (109)
79 3kdf_D Replication protein A 3 94.8 0.18 6E-06 44.4 10.3 78 105-194 32-110 (132)
80 3ig2_A Phenylalanyl-tRNA synth 94.7 0.09 3.1E-06 50.2 8.6 111 253-363 8-149 (213)
81 4gop_B Putative uncharacterize 94.3 0.26 9E-06 43.5 10.2 79 105-194 37-115 (136)
82 3au7_A TIAS, putative uncharac 93.8 0.72 2.5E-05 48.1 13.6 79 102-196 282-362 (402)
83 3ica_A Phenylalanyl-tRNA synth 93.7 0.25 8.5E-06 47.1 9.3 111 253-363 8-149 (213)
84 1jmc_A Protein (replication pr 93.0 0.23 7.7E-06 48.2 8.0 98 90-196 6-113 (246)
85 1o7i_A SSB, SSO2364, single st 92.3 0.78 2.7E-05 39.4 9.7 84 93-196 3-96 (119)
86 2kbn_A Conserved protein; nucl 91.9 0.95 3.2E-05 38.4 9.5 87 92-196 5-94 (109)
87 1b7y_B Phers, protein (phenyla 90.7 0.97 3.3E-05 51.5 10.8 106 251-365 491-620 (785)
88 3kdf_A Replication protein A 1 90.3 1.5 5.2E-05 38.0 9.4 78 92-195 11-89 (121)
89 3kf8_A Protein STN1; OB fold; 90.2 1.4 4.9E-05 42.0 9.9 86 105-196 86-185 (220)
90 2pi2_A Replication protein A 3 89.9 1.4 4.8E-05 43.5 10.0 79 105-195 72-151 (270)
91 4gop_C Putative uncharacterize 89.4 0.52 1.8E-05 50.0 6.9 96 92-196 3-108 (444)
92 2hpi_A DNA polymerase III alph 88.8 0.59 2E-05 55.4 7.3 80 102-195 1040-1123(1220)
93 2k75_A Uncharacterized protein 88.7 3.2 0.00011 34.9 10.0 88 92-201 3-99 (106)
94 1txy_A Primosomal replication 88.0 5.6 0.00019 33.2 11.1 53 135-195 50-102 (104)
95 3fhw_A Primosomal replication 86.3 2.2 7.6E-05 36.6 7.6 57 134-201 48-105 (115)
96 2vw9_A Single-stranded DNA bin 85.8 5.9 0.0002 34.7 10.4 57 133-195 49-107 (134)
97 3vdy_A SSB, single-stranded DN 85.5 8 0.00027 32.7 10.9 58 133-196 50-109 (116)
98 3tqy_A Single-stranded DNA-bin 85.3 7.4 0.00025 35.1 11.1 57 133-196 56-115 (158)
99 4gop_A Putative uncharacterize 83.2 2.4 8.2E-05 36.3 6.4 60 95-172 10-70 (114)
100 2pi2_E Replication protein A 1 82.1 8.6 0.00029 34.2 9.8 57 100-171 39-96 (142)
101 1z9f_A Single-strand binding p 79.1 14 0.00047 33.1 10.3 57 133-195 63-121 (153)
102 1z7m_A ATP phosphoribosyltrans 78.5 2.1 7.1E-05 43.8 5.2 57 447-533 276-335 (344)
103 3ulp_A Single-strand binding p 75.8 27 0.00091 29.8 10.9 56 133-195 54-119 (124)
104 1qvc_A Single stranded DNA bin 73.9 20 0.00068 31.7 9.8 84 106-195 7-114 (145)
105 3ull_A DNA binding protein; DN 72.9 37 0.0013 29.3 11.2 43 154-196 83-127 (132)
106 2fxq_A Single-strand binding p 71.9 16 0.00055 35.6 9.6 84 105-195 129-229 (264)
107 1se8_A Single-strand binding p 71.0 24 0.00082 35.2 10.7 83 106-195 131-233 (301)
108 2fxq_A Single-strand binding p 68.5 32 0.0011 33.4 10.9 57 134-196 53-110 (264)
109 3f2b_A DNA-directed DNA polyme 67.9 44 0.0015 39.0 13.3 92 93-195 8-103 (1041)
110 3eiv_A Single-stranded DNA-bin 66.7 60 0.002 30.3 11.8 55 132-192 52-108 (199)
111 1wjj_A Hypothetical protein F2 63.7 52 0.0018 29.1 10.2 88 90-195 14-119 (145)
112 4gs3_A Single-stranded DNA-bin 63.4 55 0.0019 27.4 9.8 83 104-194 11-106 (107)
113 3k8a_A Putative primosomal rep 63.1 22 0.00074 29.6 7.2 48 134-193 54-101 (103)
114 3afp_A Single-stranded DNA-bin 62.0 77 0.0026 28.6 11.4 53 132-190 52-106 (168)
115 1se8_A Single-strand binding p 60.1 57 0.0019 32.4 11.0 57 134-196 53-112 (301)
116 3pgz_A Single-stranded DNA-bin 58.4 74 0.0025 29.5 10.7 58 133-196 74-138 (193)
117 3lgj_A Single-stranded DNA-bin 57.9 1E+02 0.0035 27.8 11.4 86 105-196 24-135 (169)
118 1sr3_A APO-CCME; OB fold, beta 57.1 90 0.0031 27.3 10.3 82 101-205 25-112 (136)
119 3mxn_B RECQ-mediated genome in 53.3 1E+02 0.0035 27.3 10.0 75 102-195 56-130 (150)
120 3pco_B Phenylalanyl-tRNA synth 50.4 20 0.00068 40.8 6.4 109 255-364 495-627 (795)
121 3net_A Histidyl-tRNA synthetas 49.6 6.4 0.00022 41.8 2.1 46 467-534 310-360 (465)
122 1j6q_A Cytochrome C maturation 49.4 1.3E+02 0.0046 26.2 11.1 82 101-205 29-117 (136)
123 3koj_A Uncharacterized protein 48.1 1.2E+02 0.0041 25.3 11.4 80 105-191 12-107 (108)
124 1j5w_A Glycyl-tRNA synthetase 44.3 13 0.00043 36.3 2.9 58 462-543 133-191 (298)
125 3rf1_A Glycyl-tRNA synthetase 43.8 14 0.00047 36.2 3.1 62 459-544 142-204 (311)
126 1gm5_A RECG; helicase, replica 43.7 12 0.00041 42.5 3.2 66 98-171 159-229 (780)
127 2i4l_A Proline-tRNA ligase; al 43.1 8 0.00027 40.9 1.6 20 515-534 329-349 (458)
128 4g84_A Histidine--tRNA ligase, 42.7 9.6 0.00033 40.0 2.1 18 516-533 335-352 (464)
129 3en2_A Probable primosomal rep 40.5 79 0.0027 26.1 7.0 48 133-191 48-95 (101)
130 2k52_A Uncharacterized protein 39.7 41 0.0014 26.1 4.9 51 103-166 5-55 (80)
131 2j3l_A Prolyl-tRNA synthetase; 39.6 9.7 0.00033 41.4 1.6 19 516-534 435-454 (572)
132 2kqr_A Asparaginyl-tRNA synthe 37.1 12 0.0004 31.9 1.3 25 19-43 54-78 (113)
133 2ztg_A Alanyl-tRNA synthetase; 36.9 8.1 0.00028 43.4 0.4 66 464-545 197-266 (739)
134 1kl9_A Eukaryotic translation 36.9 38 0.0013 31.1 5.0 57 102-166 14-71 (182)
135 1h4v_B Histidyl-tRNA synthetas 36.9 21 0.00071 36.9 3.6 19 517-535 301-319 (421)
136 1wu7_A Histidyl-tRNA synthetas 36.2 14 0.00047 38.6 2.1 20 516-535 305-324 (434)
137 1yfs_A Alanyl-tRNA synthetase; 36.0 16 0.00053 38.6 2.3 91 253-360 7-113 (465)
138 4e51_A Histidine--tRNA ligase; 35.1 17 0.00058 38.5 2.5 47 467-535 295-346 (467)
139 4g85_A Histidine-tRNA ligase, 35.1 17 0.00057 39.0 2.5 19 515-533 387-405 (517)
140 1htt_A Histidyl-tRNA synthetas 34.8 15 0.00052 38.0 2.1 18 517-534 300-317 (423)
141 3hy0_A Alanyl-tRNA synthetase; 31.3 18 0.00062 37.9 1.9 85 252-351 5-101 (441)
142 2k4k_A GSP13, general stress p 31.2 37 0.0013 29.2 3.7 55 102-166 6-61 (130)
143 1v1q_A Primosomal replication 29.7 1.2E+02 0.0042 26.3 6.7 54 134-195 66-119 (134)
144 2zze_A Alanyl-tRNA synthetase; 29.4 15 0.0005 41.4 0.9 28 517-545 245-272 (752)
145 2a19_A EIF-2- alpha, eukaryoti 29.2 42 0.0014 30.6 3.8 56 103-166 15-71 (175)
146 2kct_A Cytochrome C-type bioge 28.3 2.4E+02 0.0082 22.9 11.6 75 101-198 5-87 (94)
147 2eqs_A ATP-dependent RNA helic 27.8 48 0.0016 27.2 3.6 59 102-166 11-70 (103)
148 2b29_A Replication protein A 7 26.7 2.9E+02 0.01 23.4 8.8 61 126-196 47-108 (123)
149 1qe0_A Histidyl-tRNA synthetas 26.5 32 0.0011 35.4 2.9 18 516-533 301-318 (420)
150 1nj8_A Proline-tRNA synthetase 26.2 17 0.0006 38.3 0.7 19 515-534 248-266 (459)
151 4dam_A Single-stranded DNA-bin 26.1 1.1E+02 0.0038 26.2 5.9 53 133-191 63-116 (128)
152 1eqq_A Single stranded DNA bin 24.7 29 0.00098 31.8 1.8 57 133-195 54-115 (178)
153 1hc7_A Prolyl-tRNA synthetase; 24.0 20 0.0007 38.1 0.7 18 516-534 254-271 (477)
154 1ou8_A Stringent starvation pr 22.6 85 0.0029 26.5 4.1 56 250-310 8-64 (111)
155 1yfn_A Stringent starvation pr 21.9 97 0.0033 26.4 4.4 56 250-310 9-65 (118)
156 2khi_A 30S ribosomal protein S 21.5 47 0.0016 27.8 2.4 58 101-166 28-85 (115)
157 1luz_A Protein K3, protein K2; 21.2 3E+02 0.01 21.6 7.7 55 102-166 10-66 (88)
158 1nj1_A PROR, proline-tRNA synt 20.4 31 0.0011 36.9 1.2 18 516-534 281-298 (501)
No 1
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=6.5e-123 Score=1007.17 Aligned_cols=486 Identities=47% Similarity=0.795 Sum_probs=435.3
Q ss_pred cccccCCCcCCcCccchhhhh--ccCCCCCCcccccccCcceEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEe
Q 008808 53 SIEEEGPLANNYGDVPLQELQ--SVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE 130 (553)
Q Consensus 53 ~~~~~d~~~~~yg~~~~~~~~--~~~~pyphkf~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd 130 (553)
.++++|.++++||++|+.||+ + .++++|+.|++|...++|++|+|+|||+++|.+| |++|++|||
T Consensus 21 ~~~~~~~~~~~yg~~~~~~~~~~~------------~~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD 87 (548)
T 3i7f_A 21 LKTPELVSGENFKVMPMHQSQPCY------------KTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKG-NMVFLFLRK 87 (548)
T ss_dssp CBCCCCCCCSSEEECCCCSSCGGG------------CCCCCBCCGGGCSGGGTTCEEEEEEEEEEEEECS-SEEEEEEEE
T ss_pred cccccchhhhhcCcCccccccccc------------cCCCceEEhhhcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEE
Confidence 355678999999999999998 5 6788999999999899999999999999999999 999999999
Q ss_pred CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCC-ceeEEEEEeEEEEeecCCCC-CCccccccc
Q 008808 131 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVEVQIKKLYCVSRAAKT-PITIEDASR 208 (553)
Q Consensus 131 ~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~-t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~ 208 (553)
++++||||++.+. .++++|++|++.|+.||+|.|+|+|++++.+++++ +|++||++++|+|||+|..+ |++++|+++
T Consensus 88 ~~g~iQ~v~~~~~-~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~ 166 (548)
T 3i7f_A 88 GIYTCQALVMKSE-TISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTF 166 (548)
T ss_dssp TTEEEEEEEECSS-SSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSC
T ss_pred CCeeEEEEEECCC-ccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccc
Confidence 9999999999753 36789999999999999999999999988777666 46799999999999999888 999999988
Q ss_pred cHHHHHHhh--------------------------------------hcCCCCCCCCccccccccceeeccHHhHHHHHH
Q 008808 209 SEAEIEKAS--------------------------------------KEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (553)
Q Consensus 209 ~~~~~~~~~--------------------------------------~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~ 250 (553)
++.+.++.+ .....+..+++|+||+|||||||++.++++|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~ 246 (548)
T 3i7f_A 167 PSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRI 246 (548)
T ss_dssp CHHHHHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHH
Confidence 766543210 001234568999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCC
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~ 330 (553)
||+|+++||+||.++||+||+||+|++++++|||++|.|+||+.++||+||||||||+||++|++||||||||||||+++
T Consensus 247 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~ 326 (548)
T 3i7f_A 247 QSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSN 326 (548)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSBC-------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCC
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHHc
Q 008808 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (553)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~ 410 (553)
|+|||||||||||||+|.++|+++|+++|+||++++..+.++|..+++.+...+++..+.+ .||+|++|.||+++|++.
T Consensus 327 t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~~-~pf~rit~~eai~~l~~~ 405 (548)
T 3i7f_A 327 TRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIY-RPFLRLTYKEAIEMLRAS 405 (548)
T ss_dssp SSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCC-CSCEEEEHHHHHHHHHHT
T ss_pred CCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcccccc-CCcceeEHHHHHHHHHHc
Confidence 9999999999999999987899999999999999999999889888888877888777776 799999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHH
Q 008808 411 GVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFL 490 (553)
Q Consensus 411 g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l 490 (553)
|++.++..|+++++|+.|+++|+++|+.++|||+|||.+++|||++++++||++++|||||++|+||+|||+|+|||++|
T Consensus 406 g~~~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G~Ei~nG~~rl~Dp~~~ 485 (548)
T 3i7f_A 406 GETIGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDPEFL 485 (548)
T ss_dssp TCCCCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEECCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECCEEEeeCeeecCCHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 491 AERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 491 ~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
++||+++|++++.++|||+|++||||||||||||||||+|++||+.|||||++|||+|+||+|
T Consensus 486 ~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~P 548 (548)
T 3i7f_A 486 MKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLNP 548 (548)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCCC
T ss_pred HHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 2
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=7.4e-114 Score=934.50 Aligned_cols=476 Identities=51% Similarity=0.845 Sum_probs=435.7
Q ss_pred cCCcCccchhhhh--ccCCCCCCcccccccCcceEEeccccCC-CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEE
Q 008808 61 ANNYGDVPLQELQ--SVNDPQTGKWSEAVNGREWTVVGALNGS-LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQC 137 (553)
Q Consensus 61 ~~~yg~~~~~~~~--~~~~pyphkf~~~~~~~~~~~i~~l~~~-~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQv 137 (553)
+++||++++.|++ + .+..+++.|++|... +.|++|+|+|||+++|.+|+.|+|++|||+++.|||
T Consensus 2 ~~~yG~~~~~~s~~~~------------~~~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQv 69 (487)
T 1eov_A 2 KDNYGKLPLIQSRDSD------------RTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQG 69 (487)
T ss_dssp CSSEEECCCCCCCGGG------------CCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred Cccccccccccccccc------------ccccceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEE
Confidence 4689999999986 5 456678889998876 899999999999999999944599999999999999
Q ss_pred EeecCCCC-cchHHHHHHhcCCCCceEEEEEEEecCCCccC-CCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHH
Q 008808 138 LATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK-GATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIE 214 (553)
Q Consensus 138 v~~~~~~~-~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~-~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~ 214 (553)
|++.+... ++++++++++.|+.||+|.|+|+|.+++.+.+ ..+|++||++++++|||+|.++ |++++|.++++.+.
T Consensus 70 v~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~- 148 (487)
T 1eov_A 70 LVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEA- 148 (487)
T ss_dssp EEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHH-
T ss_pred EEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccc-
Confidence 99875323 56788899999999999999999998875443 3457899999999999999987 99988765432110
Q ss_pred HhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCC
Q 008808 215 KASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294 (553)
Q Consensus 215 ~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~ 294 (553)
....++.+++|+||+|||||||++.++++|++||+|++.+|+||.++||+||+||+|+.+++++||++|.++|+|+
T Consensus 149 ----~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~~~~ 224 (487)
T 1eov_A 149 ----EAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKG 224 (487)
T ss_dssp ----HHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTE
T ss_pred ----cccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceeccCCc
Confidence 0123556899999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhH
Q 008808 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCK 374 (553)
Q Consensus 295 ~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~ 374 (553)
++||+||||||+|++|++|++||||||||||||+++++||+||||||||||+|.++|+|+|+++|+|++++++.+.++|.
T Consensus 225 ~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~ 304 (487)
T 1eov_A 225 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFA 304 (487)
T ss_dssp EEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhch
Confidence 99999999999999999999999999999999999899999999999999999877999999999999999999999999
Q ss_pred HHHHHhhhcCCCccccCCC--CCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCC
Q 008808 375 KELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRP 452 (553)
Q Consensus 375 ~~i~~~~~~~~~~~~~~~~--~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~p 452 (553)
.+++.+...++...+++.. ||++++|.||++++++.|++..+..|+.+..|+.|++++.+.++.+++||+|||.+++|
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~p 384 (487)
T 1eov_A 305 HEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRP 384 (487)
T ss_dssp HHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSC
T ss_pred hHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHHhCCCCEEEECCccccCh
Confidence 8888887777777777766 89999999999999999998888889999999999999999999999999999999999
Q ss_pred CCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh--cHHHHHHHhhcCCCCcceeeecHHHHHH
Q 008808 453 FYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK--TISTYIDSFRYGAPPHGGFGVGLERVVM 530 (553)
Q Consensus 453 fy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~--~~~~yl~a~~~G~pP~~G~GiGidRLvm 530 (553)
||+|++++||++++|||||++|+||+|||+|+|||++|++||++.|++++ .++|||+||+||+|||||||||||||+|
T Consensus 385 fy~~~~~~dp~~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvm 464 (487)
T 1eov_A 385 FYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVM 464 (487)
T ss_dssp TTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHH
T ss_pred hhcCcCCCCCCeEEEEEEEeCCEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 8899999999999999999999999999
Q ss_pred HHcCCCCccccccccCCCCCCCC
Q 008808 531 LFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 531 ~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|||++||||||+|||+|+||.|
T Consensus 465 ll~g~~~IRdVi~FPr~~~r~~p 487 (487)
T 1eov_A 465 FYLDLKNIRRASLFPRDPKRLRP 487 (487)
T ss_dssp HHTTCSSGGGGCSSCCBTTBCCC
T ss_pred HHcCCCcHHheeecCCCCCCCCC
Confidence 99999999999999999999998
No 3
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=3.9e-112 Score=908.53 Aligned_cols=434 Identities=35% Similarity=0.590 Sum_probs=403.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|...++|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++++++.|+.||+|.|+|+|+.
T Consensus 4 t~~~~~l~~~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~V~V~G~v~~ 80 (438)
T 3nem_A 4 THYSSEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSEDVVAVEGVVNF 80 (438)
T ss_dssp SCCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETT--TSCHHHHHHGGGCCTTCEEEEEEEEEE
T ss_pred EEEHHHcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCC--cCCHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 36678888888999999999999999999 999999999999999999976 356778888999999999999999998
Q ss_pred CCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHH
Q 008808 172 PDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~ 250 (553)
++. ..|++||+++++.+||+|..+ |+++++. ...+.|+|+++||||||++.++++|++
T Consensus 81 ~~~----~~~~~el~~~~i~vl~~~~~~lP~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~ 139 (438)
T 3nem_A 81 TPK----AKLGFEILPEKIVVLNRAETPLPLDPTGK-----------------VKAELDTRLDNRFMDLRRPEVMAIFKI 139 (438)
T ss_dssp CTT----STTSEEEEEEEEEEEECBCSSCSSCTTSS-----------------SCCCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred CCC----CCCcEEEEEEEEEEEecCCCCCCCCcccc-----------------ccCCHHHHhhchHHHhcCHHHHHHHHH
Confidence 753 346899999999999999878 9877542 135789999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCC
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~ 330 (553)
||+|++.||+||.++||+||+||+|+++++|||++.|.++|+|+++||+||||||||+||++|++||||||||||||+++
T Consensus 140 Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~ 219 (438)
T 3nem_A 140 RSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHN 219 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHCCcEEEeCCEEecCCCCCCccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCC
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHHc
Q 008808 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (553)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~ 410 (553)
++|||||||||||||+|.++|+|+|+++|+|++++++.+.+++..+++.++..+. .+..||+|+||.||+++|++.
T Consensus 220 t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~----~~~~pf~rity~eai~~l~~~ 295 (438)
T 3nem_A 220 TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE----EPKLPFPRVSYDKALEILGDL 295 (438)
T ss_dssp CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCC----CCCSSCCEEEHHHHHHHHHHT
T ss_pred CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccc----cCCCCceEEEHHHHHHHHHHc
Confidence 8999999999999999986699999999999999999999888877776654321 123589999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHH
Q 008808 411 GVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFL 490 (553)
Q Consensus 411 g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l 490 (553)
|+++.++.|+++++|+.|+..+++++...++||+|||.+++|||++++++||++++|||||++|+||+|||+|+|||++|
T Consensus 296 g~~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~G~Ei~nG~~el~d~~~l 375 (438)
T 3nem_A 296 GKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDIL 375 (438)
T ss_dssp TCCCCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEETTEEEEEEEEBCCCHHHH
T ss_pred CCCCCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEECCEEEEeCeeecCCHHHH
Confidence 99988889999999999999998888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 491 AERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 491 ~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
++||+++|++++.++|||+|++||+|||||||||||||+|++||++|||||++|||+|+||+|
T Consensus 376 ~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi~FPr~~~rl~P 438 (438)
T 3nem_A 376 VEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLTP 438 (438)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCCSSCCCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcccCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 4
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=7.8e-107 Score=871.55 Aligned_cols=431 Identities=25% Similarity=0.421 Sum_probs=375.5
Q ss_pred cCcceEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEE
Q 008808 88 NGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (553)
Q Consensus 88 ~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G 167 (553)
+..+++.|.++ ..+.|++|+|+|||+++|.+|++++|++|||+++.||||++.+. .++. . .+..|+.||+|.|+|
T Consensus 15 ~~~~~~~i~~~-~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~--~~~~-~-~~~~l~~g~~V~V~G 89 (456)
T 3m4p_A 15 ETPIVCNIRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKE--LCEP-E-KVKLLTRECSLEITG 89 (456)
T ss_dssp -CCCCEECCST-TCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTT--TTCH-H-HHTTCCTTCEEEEEE
T ss_pred CcceEEEhhhh-hhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEeccc--chhh-H-HhhcCCCccEEEEEe
Confidence 34568899999 57899999999999999999978999999999999999998742 2222 1 345799999999999
Q ss_pred EEecCCCcc---CCCc-eeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccH
Q 008808 168 VVSVPDVEI---KGAT-QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTL 242 (553)
Q Consensus 168 ~v~~~~~~~---~~~t-~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~ 242 (553)
+|.+++... +.+| |++||++++++||++|..+ |... ....++|+|+++||||||++
T Consensus 90 ~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~-------------------~~~~~~e~r~~~R~LdlR~~ 150 (456)
T 3m4p_A 90 RLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENII-------------------NKDSSIPQKMQNRHIVIRSE 150 (456)
T ss_dssp EEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTS-------------------CTTCCHHHHHHTHHHHTTSH
T ss_pred EEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccc-------------------cccCCHHHHhhchHHhhhcH
Confidence 998765422 1233 7899999999999999654 3211 12367899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEec
Q 008808 243 ANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGP 322 (553)
Q Consensus 243 ~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~ 322 (553)
.++++|++||+|+++||+||+++||+||+||+|++++++||+++|.++|||+++||+||||||||++++ |++|||||||
T Consensus 151 ~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~~~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~ 229 (456)
T 3m4p_A 151 HTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIA-SLGKSFCMLS 229 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEEEETTEEEEECSCCHHHHHTTHH-HHSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCccccccccccCCCcccccCHHHHHHHHHh-ccCcEEEEEh
Confidence 999999999999999999999999999999999988899999999999999999999999999999886 5999999999
Q ss_pred eecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHH
Q 008808 323 VFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 402 (553)
Q Consensus 323 ~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~e 402 (553)
|||||+++|+|||||||||||||+|. +|+|+|+++|+||+++++.+.+++...++.+...+. ....||+|++|.|
T Consensus 230 ~FR~E~~~t~rH~pEFtmlE~e~af~-d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~----~~~~pf~rity~e 304 (456)
T 3m4p_A 230 SYRAEQSRTVRHLAEYLHLEAELPFI-SFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK----LPTRPFKRMTYAD 304 (456)
T ss_dssp EECCCSCCCSSCCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC----CCCSSCEEEEHHH
T ss_pred heecCCCCCCcchHHHHHhHHHHhcC-CHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcccc----cCCCCCeEeeHHH
Confidence 99999998999999999999999998 699999999999999999998887766655432211 1235899999999
Q ss_pred HHHHHHHcCCCC-----CCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EE
Q 008808 403 GVQMLKDAGVEI-----DPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EE 476 (553)
Q Consensus 403 a~~ll~~~g~~~-----~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~E 476 (553)
|+++|++.|++. .++.|+++++|+.|+.. ++.| +||+|||.+++|||++++++||++++|||||++| +|
T Consensus 305 Ai~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~----~~~P-~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gE 379 (456)
T 3m4p_A 305 AIKYCNDHGILNKDKPFEYGEDISEKPERQMTDE----IGCP-IFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGE 379 (456)
T ss_dssp HHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHH----HTSC-EEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEE
T ss_pred HHHHHHHcCCCccccCcchHHHHHHHHHHHHHHH----hCce-EEEECCCchhCccccccCCCCCCeeEEEEEEeCCceE
Confidence 999999998753 35678999999988754 4555 5678999999999999999999999999999999 69
Q ss_pred EeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 477 IISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 477 i~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
|+|||+|+|||++|++||++.|++++.++|||++++||+|||||||||||||+|++||++|||||++|||+|+||.|
T Consensus 380 i~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~FPr~~~r~~P 456 (456)
T 3m4p_A 380 IVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCEP 456 (456)
T ss_dssp EEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCBBTTBCCC
T ss_pred EccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeeccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1e-106 Score=883.58 Aligned_cols=444 Identities=21% Similarity=0.320 Sum_probs=373.7
Q ss_pred cCCCCCCcccccccCcce-EEecccc--CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcch-HH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALN--GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSK-EM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~-~~ 150 (553)
|.|||||+|.++++..++ .++.++. +...|++|+|+|||+++|.+|+|++|++|||++++||||++.+.. .++ .+
T Consensus 23 g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~-~~~~~~ 101 (521)
T 3bju_A 23 GEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY-KSEEEF 101 (521)
T ss_dssp TCCSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGS-SCHHHH
T ss_pred CCCCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCcc-CCHHHH
Confidence 789999999999887654 3444443 345689999999999999999899999999999999999987531 133 34
Q ss_pred HHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCcc
Q 008808 151 VRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (553)
Q Consensus 151 ~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (553)
.++.+.|+.||+|.|+|+|.+++ +|++||++++|.+||+|+.+ |++.. +..+++
T Consensus 102 ~~~~~~l~~gd~V~V~G~v~~t~------~ge~ei~~~~i~~l~~~~~~lP~~~~-------------------~~~~~e 156 (521)
T 3bju_A 102 IHINNKLRRGDIIGVQGNPGKTK------KGELSIIPYEITLLSPCLHMLPHLHF-------------------GLKDKE 156 (521)
T ss_dssp HHHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCCSCCCCC-----------------------CCHH
T ss_pred HHHHhcCCCCCEEEEEEEEEecC------CCCEEEEEeEEEEeecCCCCCCCccc-------------------cccChh
Confidence 44667899999999999999875 46899999999999999888 86432 236899
Q ss_pred ccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHh
Q 008808 230 TRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHK 306 (553)
Q Consensus 230 ~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~l 306 (553)
+|+++|||||| ++.++++|++||+|+++||+||.++||+||+||+|++++++++|++|.| ++||+++||+|||||||
T Consensus 157 ~r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~l 236 (521)
T 3bju_A 157 TRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYH 236 (521)
T ss_dssp HHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHH
T ss_pred hhhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHHH
Confidence 99999999999 5999999999999999999999999999999999997554444689987 78999999999999999
Q ss_pred hhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCC
Q 008808 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (553)
Q Consensus 307 k~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~ 386 (553)
|+||+||++||||||||||||++++ |||||||||||||+|+ ||+|+|+++|+||+++++.+.+++...+.....+.+.
T Consensus 237 k~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~-d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~ 314 (521)
T 3bju_A 237 KMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYA-DYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQA 314 (521)
T ss_dssp HHHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCC
T ss_pred HHHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcC-CHHHHHHHHHHHHHHHHHHHhCCceEEeccccccccc
Confidence 9999999999999999999999965 9999999999999998 7999999999999999999987664332211112223
Q ss_pred ccccCCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcH--------------------------HHHHHhHHHHHHhCCcc
Q 008808 387 EPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTE--------------------------SERKLGQLVLEKYGTEF 440 (553)
Q Consensus 387 ~~~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~--------------------------~e~~l~~~v~~~~~~~~ 440 (553)
..+++..||+|++|.||++.+. |+++.+..|+++. ..+.++++|++++..|
T Consensus 315 ~~~d~~~pf~rit~~eai~~~~--g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l~~P- 391 (521)
T 3bju_A 315 YDVDFTPPFRRINMVEELEKAL--GMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINP- 391 (521)
T ss_dssp EEEECCSSCEEEEHHHHHHHHH--TSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGCCSC-
T ss_pred ceeccCCCcccccHHHHHHHHh--CCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhcCCc-
Confidence 3567778999999999998654 5555443344332 1233445556666654
Q ss_pred EEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHc------CCChhc--HHHHHHHhh
Q 008808 441 YILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQAC------GIDVKT--ISTYIDSFR 512 (553)
Q Consensus 441 ~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~------g~~~~~--~~~yl~a~~ 512 (553)
+||+|||..++|| +|++++||++++|||||++|+||||||+|+|||+.|++||+++ |.+++. ++|||+|++
T Consensus 392 ~fI~dyP~~~spl-a~~~~~dp~~~~rfdL~i~G~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~ 470 (521)
T 3bju_A 392 TFICDHPQIMSPL-AKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALE 470 (521)
T ss_dssp EEEECCBGGGCTT-BCBCSSSTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHT
T ss_pred EEEECCccccCcc-cccCCCCCCeeeeEEEEEcceeeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHh
Confidence 5678999999999 7899999999999999999999999999999999999999754 888765 699999999
Q ss_pred cCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCC
Q 008808 513 YGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 513 ~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~r 550 (553)
||||||||||||||||||+|||++||||||+|||++..
T Consensus 471 yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp TTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred cCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 99999999999999999999999999999999998864
No 6
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=7.3e-105 Score=864.66 Aligned_cols=447 Identities=25% Similarity=0.364 Sum_probs=372.0
Q ss_pred CcCCcCccchhhhhc----cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeC
Q 008808 60 LANNYGDVPLQELQS----VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRER 131 (553)
Q Consensus 60 ~~~~yg~~~~~~~~~----~~~pyphkf~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~ 131 (553)
+++.|-..|...++. |. ||||+|.++++..+. .++.++.. ...|++|+|+|||+++|.+| |++|++|||+
T Consensus 35 ~~~~~~~~r~~k~~~l~~~g~-~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G-k~~Fi~LrD~ 112 (529)
T 4ex5_A 35 DENQIVAERRDKLRALRDQGI-AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQDG 112 (529)
T ss_dssp -CHHHHHHHHHHHHHHHHTSC-SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEECS
T ss_pred ChHHHHHHHHHHHHHHHHcCC-CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC-CeEEEEEEeC
Confidence 344555555544433 44 999999999876443 22333321 12389999999999999999 8999999999
Q ss_pred CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccH
Q 008808 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSE 210 (553)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~ 210 (553)
++.||||++.+ .++++++++++.|+.||+|.|+|+|.+++ +|++||++++|.+||+|+.+ |++..+
T Consensus 113 sg~iQvv~~~~--~~~~~~~~~~~~l~~gd~V~V~G~v~~t~------~gelel~~~~i~vLs~a~~plP~k~~~----- 179 (529)
T 4ex5_A 113 SGQIQFFVTPA--DVGAETYDAFKKWDLGDIVAARGVLFRTN------KGELSVKCTQLRLLAKALRPLPDKFHG----- 179 (529)
T ss_dssp SCEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEECT------TSCEEEEEEEEEEEECCSSCCCC---------
T ss_pred CeeEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEEcC------CCcEEEEEEEEEEEecCCCCCCccccC-----
Confidence 99999999875 34566778888999999999999998764 46899999999999999877 875432
Q ss_pred HHHHHhhhcCCCCCCCCccccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCc--cce
Q 008808 211 AEIEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVF 287 (553)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga--~~F 287 (553)
..++|+||++|||||| ++.++++|++||+|+++||+||+++||+||+||+|++. +||| .+|
T Consensus 180 --------------l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~--~gGA~a~pF 243 (529)
T 4ex5_A 180 --------------LADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPI--PGGAAAKPF 243 (529)
T ss_dssp ----------------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS--CCSSSSCCC
T ss_pred --------------CcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc--CCCCccccc
Confidence 3578999999999998 69999999999999999999999999999999999864 4555 689
Q ss_pred ee--cCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 288 RL--DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 288 ~v--~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
.+ ++|+.++||+||||||||+||+||++||||||||||||++ +.|||||||||||||+|. ||+|+|+++|+||+++
T Consensus 244 ~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~-~~rH~pEFtmlE~e~af~-d~~dlm~l~E~li~~v 321 (529)
T 4ex5_A 244 VTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGV-SPRHNPEFTMMEFYAAYT-DYRWLMDFTERLIRQA 321 (529)
T ss_dssp EEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCC-BTTBCSEEEEEEEEEETC-CHHHHHHHHHHHHHHH
T ss_pred ccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCC-CCCcccHhHhhhhhhhcC-CHHHHHHHHHHHHHHH
Confidence 75 6899999999999999999999999999999999999998 479999999999999998 6999999999999999
Q ss_pred HHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHH-------------------HcCCCCCC----CCCCCc
Q 008808 366 FDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK-------------------DAGVEIDP----LGDLNT 422 (553)
Q Consensus 366 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~-------------------~~g~~~~~----~~dl~~ 422 (553)
++.+.+++.. .+....+++..||+||||.||++.+. +.|+++++ ..++..
T Consensus 322 ~~~v~~~~~~-------~~~~~~id~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~ 394 (529)
T 4ex5_A 322 AVDALGTATI-------QYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGA 394 (529)
T ss_dssp HHHHHSCSEE-------EETTEEEETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHH
T ss_pred HHHHhCcCce-------ecCceeeccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHH
Confidence 9999875431 23334567788999999999997542 34555444 223334
Q ss_pred HHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------
Q 008808 423 ESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------ 496 (553)
Q Consensus 423 ~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------ 496 (553)
.....++.+++++++.|+| |+|||.+++||| +++++||++++|||||++|+||||||+|+|||++|++||.+
T Consensus 395 l~~e~~~~~vE~~l~~P~F-I~dyP~~~spla-k~~~~~p~~~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~ 472 (529)
T 4ex5_A 395 LQLALFEETAEAQLWEPTF-IIDYPIEVSPLA-RESDTVAGITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKD 472 (529)
T ss_dssp HHHHHHHHHTGGGCCSCEE-EEEEEGGGCTTB-CBCSSSTTEEEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCEE-EECCchhhCCCc-ccCCCCCCceEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHh
Confidence 4556667777788887655 678999999995 88999999999999999999999999999999999999863
Q ss_pred cCCChhc--HHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCC
Q 008808 497 CGIDVKT--ISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDP 548 (553)
Q Consensus 497 ~g~~~~~--~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p 548 (553)
.|.+++. ++|||+|++||||||||||||||||||+|||++|||||++||+..
T Consensus 473 ~gd~ea~~~De~yl~aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r 526 (529)
T 4ex5_A 473 AGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLR 526 (529)
T ss_dssp TTCTTSCCCCHHHHHHHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCC
T ss_pred cCCcccccchHHHHHHHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccC
Confidence 4656554 499999999999999999999999999999999999999999864
No 7
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.6e-104 Score=843.42 Aligned_cols=424 Identities=33% Similarity=0.587 Sum_probs=386.6
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|+++...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. +++++++.|+.||+|.|+|+|.++
T Consensus 5 ~~~~~l~~~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~-----~~~~~~~~l~~~~~v~v~G~v~~~ 78 (429)
T 1wyd_A 5 HFIADVTPEYDGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVVDKNS-----SAFGISQELTQESVIQVRGIVKAD 78 (429)
T ss_dssp SCTTTCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECTTS-----TTHHHHTTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh-----HHHHHHHhCCCCCEEEEEEEEEec
Confidence 4467777678999999999999999999 8999999999999999998652 346677899999999999999988
Q ss_pred CCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHH
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~R 251 (553)
+. .+|++||+++++.+||+|.++ |+++++. ...+.|+|+++||||||++.++++|++|
T Consensus 79 ~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~r 137 (429)
T 1wyd_A 79 KR----APRGIELHAEEITLLSKAKAPLPLDVSGK-----------------VKADIDTRLRERVLDLRRQEMQAVIKIQ 137 (429)
T ss_dssp SS----SGGGEEEEEEEEEEEECCCSSCSSCSSSC-----------------CCCCHHHHHHTHHHHHTSHHHHHHHHHH
T ss_pred CC----CCccEEEEEeEEEEeccCCCCCCCCcccc-----------------ccCChhHhhhccceeccCHHHHHHHHHH
Confidence 63 357899999999999999777 9866431 1257899999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCC
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t 331 (553)
|+|++.+|+||.++||+||+||+|+.++++|++++|.++|+|.++||+||||+|+|+ +++|++|||+||||||||++++
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~ 216 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDT 216 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEecCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCcc
Confidence 999999999999999999999999988889888999999999999999999999999 7788999999999999999988
Q ss_pred CCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHHcC
Q 008808 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411 (553)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~g 411 (553)
.||+||||||||||+|. +++|+|+++|+|++++++.+.++|..+++.++..++. +..||+|++|.||++++++.|
T Consensus 217 ~RH~pEFtqle~e~~~~-~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~----l~~pf~rity~eA~~~~~~~g 291 (429)
T 1wyd_A 217 PFHLAEFISMDVEMAFA-DYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE----VKIPIKRLKYTEAIEILRSKG 291 (429)
T ss_dssp SSCCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCC----CCSSCEEEEHHHHHHHHHHSS
T ss_pred ccccceeeEeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccchhhhhhccccccc----CCCCccEEEHHHHHHHHHhcC
Confidence 89999999999999998 6999999999999999999998888888766543332 246899999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHH
Q 008808 412 VEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLA 491 (553)
Q Consensus 412 ~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~ 491 (553)
++..+..|++++.|+.|++.+ ...++||+|||..++|||++++++||+++++||||++|.||+|||+|+|||++|+
T Consensus 292 ~~~~~~~~l~~~~e~~l~~~~----~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~Ei~~G~~r~~d~~~q~ 367 (429)
T 1wyd_A 292 YNIKFGDDIGTPELRILNEEL----KEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLE 367 (429)
T ss_dssp CCCCTTSCCCHHHHHHHHHHH----CCSEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTEEEEEEEEBCCCHHHHH
T ss_pred CCcccCcccCcHHHHHHHHHh----ccCCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECCEEEEeCeeeeCCHHHHH
Confidence 888888889999999888655 3357888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 492 ERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 492 ~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+||+++|++++.++|||+|++||+|||||||||||||+|++||++||||||+|||+++||.|
T Consensus 368 ~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~p 429 (429)
T 1wyd_A 368 EALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLTP 429 (429)
T ss_dssp HHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCBTTBCCC
T ss_pred HHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998
No 8
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=1.2e-103 Score=844.97 Aligned_cols=422 Identities=27% Similarity=0.451 Sum_probs=364.4
Q ss_pred EeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
+|+++. .+.|++|+|+|||+++|.+|++++|++|||+++.||||++.+ .++. ++. ..|+.||+|.|+|+|.+++
T Consensus 2 ~i~~~~-~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~---~~~~-~~~-~~l~~~~~v~v~G~v~~~~ 75 (435)
T 2xgt_A 2 KIRDLV-KHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK---LCQT-YDA-LTVNTECTVEIYGAIKEVP 75 (435)
T ss_dssp CGGGGG-GGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGG---GGSS-HHH-HHCCTTCEEEEEEEEEECC
T ss_pred chhhhh-hcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCc---chhH-HHH-hcCCCCCEEEEEEEEEecC
Confidence 355663 578999999999999999987899999999999999999843 2222 222 2699999999999998865
Q ss_pred CccCCCceeEEEEEeEEEEeecCCCC---CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHH
Q 008808 174 VEIKGATQQVEVQIKKLYCVSRAAKT---PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (553)
Q Consensus 174 ~~~~~~t~~~Ei~v~~i~~ls~~~~~---P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~ 250 (553)
.. +..+|++||+++++.+|+++.+. |+.. . ..+.|+|+++||||||++.++++|++
T Consensus 76 ~~-~~~~g~~El~~~~~~vl~~~~p~~~~pl~~------------------~--~~~~e~r~~~R~Ldlr~~~~~~~~r~ 134 (435)
T 2xgt_A 76 EG-KEAPNGHELIADFWKIIGNAPPGGIDNVLN------------------E--EASVDKMLDNRHLVIRGENAAALLRL 134 (435)
T ss_dssp -------TTEEEEEEEEEEEECCCTTHHHHHCC----------------------CCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred CC-cCCCCcEEEEEEEEEEeecCCCcccccccc------------------c--CCCHHHHhhCeeeeecCHHHHHHHHH
Confidence 32 24567899999999999986331 2211 0 36889999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCC
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~ 330 (553)
||+|+++||+||+++||+||+||+|+.++++||+++|.++|+|+++||+||||||||++|+ |++||||||||||||+++
T Consensus 135 Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~ 213 (435)
T 2xgt_A 135 RAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSR 213 (435)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEETTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeeccCCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCC
Confidence 9999999999999999999999999988899999999999999999999999999999885 699999999999999998
Q ss_pred CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHhhhcCCCccccCCCCCcccCHHHHHHHHH
Q 008808 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKE--LEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (553)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~--i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~ 408 (553)
++|||||||||||||+|. ||+|+|+++|+|++++++.+.+.+... ++.+...+. ....||+|+||.||+++++
T Consensus 214 t~RH~~EFT~lE~e~af~-d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~pf~rity~ea~~~~~ 288 (435)
T 2xgt_A 214 TRRHLAEYAHVEAECPFI-TLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQ----PPERPFLRMEYKDAIKWLQ 288 (435)
T ss_dssp CTTCCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCC----CCCSSCEEEEHHHHHHHHH
T ss_pred ccccccceeEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhccccchhhhhhcccccc----ccCCCceEEEHHHHHHHHH
Confidence 899999999999999998 699999999999999999987765432 332221110 1125899999999999999
Q ss_pred HcCCC------CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEEeece
Q 008808 409 DAGVE------IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGA 481 (553)
Q Consensus 409 ~~g~~------~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei~~G~ 481 (553)
..|+. ..++.++....|+.|...+ .. ++||+|||.+++|||++++++||++++|||||++| +||+|||
T Consensus 289 ~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~----~~-p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~ 363 (435)
T 2xgt_A 289 EHNVENEFGNTFTYGEDIAEAAERFMTDTI----NK-PILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGS 363 (435)
T ss_dssp HTTCBCTTSCBCCTTSCCCHHHHHHHHHHH----TS-CEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEE
T ss_pred hcCCCcccccccchhhHHHHHHHHHHHHhc----CC-cEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeee
Confidence 88765 2345678888898886544 33 57788999999999999999999999999999999 6999999
Q ss_pred eccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 482 QRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 482 ~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|+|||++|++||++.|++++.++|||+|++||+|||||||||||||+|++||++||||||+|||+|+||.|
T Consensus 364 ~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdvi~FPr~~~~~~p 435 (435)
T 2xgt_A 364 MRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP 435 (435)
T ss_dssp EBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCBTTBCCC
T ss_pred EEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhEecccCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 9
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=6.6e-103 Score=834.97 Aligned_cols=418 Identities=37% Similarity=0.593 Sum_probs=325.1
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCC-CCceEEEEEEEe
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLS-NESIVDVIGVVS 170 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~-~esiV~V~G~v~ 170 (553)
|+.|++|. .+.|++|+|+|||+++|.+| |++|++|||+++.||||++. +.|+ .||+|.|+|+|.
T Consensus 2 ~~~~~~l~-~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~-------------~~l~~~~~~v~v~G~v~ 66 (422)
T 1n9w_A 2 RVLVRDLK-AHVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGG-------------LKLPLPESALRVRGLVV 66 (422)
T ss_dssp BCCGGGGG-GCTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEES-------------CCCCCTTCEEEEEEEEE
T ss_pred eEEHHHHH-hcCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEEc-------------cccCCCCCEEEEEEEEE
Confidence 35677777 78899999999999999999 89999999999999999975 3699 999999999999
Q ss_pred cCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 171 VPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 171 ~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
+++. .+|++||+++++.+||+|..+ |++.++. .+..+.|+|+++||||||++.++++|+
T Consensus 67 ~~~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~----------------~~~~~~e~r~~~R~Ldlr~~~~~~~~~ 126 (422)
T 1n9w_A 67 ENAK----APGGLEVQAKEVEVLSPALEPTPVEIPKE----------------EWRANPDTLLEYRYVTLRGEKARAPLK 126 (422)
T ss_dssp ECTT----STTSEEEEEEEEEEEECCCSCCC---------------------------------CHHHHTTSHHHHHHHH
T ss_pred ecCC----CCccEEEEEeEEEEeccCCcCCCCCcccc----------------ccCCCHHHHhhhhHHhhcCHHHHHHHH
Confidence 8863 356899999999999999877 9866431 023578999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~ 329 (553)
+||+|++.+|+||.++||+||+||+|+.++++|++++|.++|+|.++||+||||+|+|+++ +|++|||+||||||||++
T Consensus 127 ~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~ 205 (422)
T 1n9w_A 127 VQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEH 205 (422)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHHHHH-HHHSEEEEEEEC------
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCC
Confidence 9999999999999999999999999998888888889999999999999999999999987 779999999999999999
Q ss_pred CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCC-CCCcccCHHHHHHHHH
Q 008808 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK-PKTLRLTFEEGVQMLK 408 (553)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~ea~~ll~ 408 (553)
++.||+||||||||||+|.++|+|+|+++|+|++++++.+.+++..+++.++..++ +. .||+|+||.||+++++
T Consensus 206 ~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~-----~~~~pf~rity~eA~~~~~ 280 (422)
T 1n9w_A 206 HTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP-----SFPQDIPRLTHAEAKRILK 280 (422)
T ss_dssp -------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCC-----CCSSSCCEEEHHHHHHHHH
T ss_pred CCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccc-----ccCCCcceeEHHHHHHHHH
Confidence 88899999999999999986799999999999999999999888888876654333 22 5899999999999998
Q ss_pred HcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHH
Q 008808 409 DAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPE 488 (553)
Q Consensus 409 ~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~ 488 (553)
+.| +..+..|+.++.|+.|++.+.++++..++||+|||..++|||++++++ ++++|||||++|.||+|||+|+|||+
T Consensus 281 ~~~-~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d--~~~~~fDL~~~G~Ei~~G~~r~~d~~ 357 (422)
T 1n9w_A 281 EEL-GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED--GTTRSFDLLFRGLEITSGGQRIHRYE 357 (422)
T ss_dssp HTS-CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT--SBBSEEEEEETTEEEEEEEEBCCCHH
T ss_pred hcC-CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC--CEEEEEEEEECCEEEEeCEeecCCHH
Confidence 888 666777899999999999999889888899999999999998776654 89999999999999999999999999
Q ss_pred HHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 489 FLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 489 ~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|++||+++|++++.++|||+|++||+|||||||||||||+|++||.+||||||+|||+++||.|
T Consensus 358 ~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~~~~~~p 422 (422)
T 1n9w_A 358 ELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLTP 422 (422)
T ss_dssp HHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988
No 10
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=3.6e-103 Score=851.69 Aligned_cols=436 Identities=22% Similarity=0.362 Sum_probs=357.5
Q ss_pred cCCCCCCcccccccCcce-EEeccccC-C--CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG-S--LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~-~--~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|.|||||+|.++++..+. .+..++.. . ..|++|+|+|||+++|.+| |++|++|||+++.||||++.+. +++++
T Consensus 31 g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~~--~~~~~ 107 (504)
T 1e1o_A 31 QGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARDS--LPEGV 107 (504)
T ss_dssp HSCSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTT--SSTTH
T ss_pred CCCCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEECCc--CCHHH
Confidence 678999999888765432 22222221 1 1288999999999999999 9999999999999999998752 34445
Q ss_pred HH-HHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCc
Q 008808 151 VR-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQ 228 (553)
Q Consensus 151 ~~-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 228 (553)
++ .++.|+.||+|.|+|+|.+++ +|++||+++++.+||+|+.+ |.... +.+++
T Consensus 108 ~~~~~~~l~~g~~V~V~G~v~~~~------~ge~ei~~~~i~vl~~a~~plP~k~~-------------------~~~~~ 162 (504)
T 1e1o_A 108 YNDQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLPDKFH-------------------GLQDQ 162 (504)
T ss_dssp HHHTGGGCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCC--------------------------T
T ss_pred HHHHHhcCCCCCEEEEEEEEEecC------CceEEEEEEEEEEecccCCCCCcccc-------------------CCcCh
Confidence 55 668899999999999999864 46899999999999999877 84321 23578
Q ss_pred cccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhH
Q 008808 229 DTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLH 305 (553)
Q Consensus 229 e~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~ 305 (553)
++|+++|||||| ++.++++|++||+|+++||+||+++||+||+||+|++.+.+++|++|.| +++|.++||+||||||
T Consensus 163 e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLy 242 (504)
T 1e1o_A 163 EVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELY 242 (504)
T ss_dssp THHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHH
T ss_pred hhhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHHH
Confidence 999999999996 7999999999999999999999999999999999996544444679988 7899999999999999
Q ss_pred hhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCC
Q 008808 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (553)
Q Consensus 306 lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~ 385 (553)
||+||+||++||||||||||||+++ .|||||||||||||+|. ||+|+|+++|+||+++++.+.+++. + .+.
T Consensus 243 lk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~-d~~dlm~l~E~li~~~~~~v~~~~~--i-----~~~ 313 (504)
T 1e1o_A 243 LKRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYA-DYHDLIELTESLFRTLAQEVLGTTK--V-----TYG 313 (504)
T ss_dssp HHHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHHSSSE--E-----EET
T ss_pred HHHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHHhCCce--e-----eeC
Confidence 9999999999999999999999995 59999999999999998 6999999999999999999987664 2 122
Q ss_pred CccccCCCCCcccCHHHHHHHHHH-------------------cCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEecc
Q 008808 386 FEPLKYKPKTLRLTFEEGVQMLKD-------------------AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRY 446 (553)
Q Consensus 386 ~~~~~~~~~~~~i~~~ea~~ll~~-------------------~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~ 446 (553)
...+++..||+|+||.||++.+.. .|+++++...+.......+..++++++.. ++||+||
T Consensus 314 ~~~i~~~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~-p~fV~dy 392 (504)
T 1e1o_A 314 EHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQ-PTFITEY 392 (504)
T ss_dssp TEEEETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCS-CEEEECC
T ss_pred CEeeccCCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhccCCC-eEEEECC
Confidence 334567779999999999976532 12222111111112233344455556655 4667899
Q ss_pred CCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCCCc
Q 008808 447 PLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAPPH 518 (553)
Q Consensus 447 P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~pP~ 518 (553)
|..++|| +|++++||++++|||||++|.||+|||+|+|||++|++||++ .|.+++. ++|||+|++||+|||
T Consensus 393 P~~~~pf-~~~~~~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPh 471 (504)
T 1e1o_A 393 PAEVSPL-ARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPT 471 (504)
T ss_dssp BGGGCTT-BCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSE
T ss_pred CcccCcC-cCCCCCCCCceEEEEEEECCeEEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCc
Confidence 9999999 799999999999999999999999999999999999999975 2444432 499999999999999
Q ss_pred ceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 519 GGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 519 ~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
||||||||||||+|||++||||||+|||++.
T Consensus 472 gG~glGiDRLvmlltg~~~IRdVi~FPr~~~ 502 (504)
T 1e1o_A 472 AGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 502 (504)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred eeEEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 9999999999999999999999999999874
No 11
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=2.7e-102 Score=833.58 Aligned_cols=425 Identities=30% Similarity=0.468 Sum_probs=384.8
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++++++.|+.||+|.|+|+|.++
T Consensus 5 ~~~~~l~~~~~~~~V~v~G~v~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~v~v~G~v~~~ 81 (434)
T 1x54_A 5 VYCQEVKPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKN--VVGEETFEKAKKLGRESSVIVEGIVKAD 81 (434)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEec
Confidence 4577787778999999999999999999 899999999999999999764 2456778888999999999999999988
Q ss_pred CCccCCCceeEEEEEeEEEEeecCCCC-CC--ccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAAKT-PI--TIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~--~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
+. .+|++||+++++++||+| ++ |+ +.+ ..+.|+|+++||||||++.++++|+
T Consensus 82 ~~----~~~~~el~~~~~~vl~~~-~~~P~~~~~~--------------------~~~~e~r~~~R~Ldlr~~~~~~~~~ 136 (434)
T 1x54_A 82 ER----APGGAEVHVEKLEVIQAV-SEFPIPENPE--------------------QASPELLLDYRHLHIRTPKASAIMK 136 (434)
T ss_dssp TT----SGGGEEEEEEEEEEEECC-SCCSSCSSGG--------------------GSCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CC----CCccEEEEEeEEEEeecC-CCCCCccccc--------------------CCCHHHhhhceeeeecCHHHHHHHH
Confidence 63 357899999999999999 66 87 433 1578999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~ 329 (553)
+||+|++.+|+||.++||+||+||+|..+++++++++|.++|+|.++||+||||+|+|+ +++|++|||+||||||||++
T Consensus 137 ~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~ 215 (434)
T 1x54_A 137 VKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKS 215 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEeecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCC
Confidence 99999999999999999999999999988888888899999999999999999999999 67889999999999999999
Q ss_pred CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHH
Q 008808 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409 (553)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~ 409 (553)
++.||+||||||||||+|. +++|+|+++|+|++++++.+.++|..+++.++..++.-. .+..||+|++|.||++++++
T Consensus 216 ~~~RH~pEFtqle~e~~~~-~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~-~~~~pf~rity~ea~~~~~~ 293 (434)
T 1x54_A 216 RTRRHLTEFWHLELEAAWM-DLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLK-NTEPPFPRISYDEAIDILQS 293 (434)
T ss_dssp CCSSCCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHH-TCCSSCCEEEHHHHHHHHHH
T ss_pred CCcccccEEEEeeEEEcCC-CHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCccccccc-ccCCCCcEEEHHHHHHHHHh
Confidence 8889999999999999998 699999999999999999999888877766544322100 13458999999999999999
Q ss_pred cCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeC-CE-EEeeceeccCCH
Q 008808 410 AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIR-GE-EIISGAQRIHIP 487 (553)
Q Consensus 410 ~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~-G~-Ei~~G~~r~~d~ 487 (553)
.|++..+..|++++.|+.|++. +.. ++||+|||..++|||++++++||+++++||||++ |. ||+|||+|+|||
T Consensus 294 ~g~~~~~~~dl~~~~e~~l~~~----~~~-p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~ 368 (434)
T 1x54_A 294 KGVNVEWGDDLGADEERVLTEE----FDR-PFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDY 368 (434)
T ss_dssp TTCCCCTTCCCCHHHHHHHHTT----CSS-CEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCH
T ss_pred cCCCcccCCccChHHHHHHHHH----hCC-cEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCH
Confidence 9988888888999999888653 333 5778899999999999999999999999999999 85 999999999999
Q ss_pred HHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 488 EFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 488 ~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
++|++||+++|++++.++|||+|++||+|||||||||||||+|+++|++|||||++|||+++||.|
T Consensus 369 ~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~p 434 (434)
T 1x54_A 369 DKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLYP 434 (434)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCBTTBCCC
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 12
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=3.7e-102 Score=842.52 Aligned_cols=436 Identities=22% Similarity=0.368 Sum_probs=360.1
Q ss_pred cCCCCCCcccccccCcce-EEeccccC-C--CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG-S--LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~-~--~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|.|||||+|.++++..+. .+..++.. . ..|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .+++++
T Consensus 23 g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~--~~~~~~ 99 (493)
T 3a74_A 23 GVDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG-KAGFAHIQDVTGQIQIYVRQD--DVGEQQ 99 (493)
T ss_dssp TCCTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEEHH--HHHHHH
T ss_pred CCCCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC-CcEEEEEEECCEeEEEEEECC--cCCHHH
Confidence 779999999988765432 22222221 1 1288999999999999999 899999999999999999865 244566
Q ss_pred HHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCcc
Q 008808 151 VRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (553)
Q Consensus 151 ~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (553)
++.++.|+.||+|.|+|+|.+++ +|++||+++++.+||+|+.+ |.... +.++++
T Consensus 100 ~~~~~~l~~g~~v~V~G~v~~~~------~ge~ei~~~~i~vl~~~~~plP~k~~-------------------~~~~~e 154 (493)
T 3a74_A 100 YELFKISDLGDIVGVRGTMFKTK------VGELSIKVSSYEFLTKALRPLPEKYH-------------------GLKDIE 154 (493)
T ss_dssp HHHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCCC------------------------CHH
T ss_pred HHHHhcCCCCCEEEEEEEEEeCC------CCcEEEEEEEEEEcccccCCCCcccc-------------------CCCCHh
Confidence 67778899999999999999864 46899999999999999877 84321 235789
Q ss_pred ccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHh
Q 008808 230 TRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHK 306 (553)
Q Consensus 230 ~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~l 306 (553)
+|+++|||||| ++.++++|++||+|++.||+||.++||+||+||+|++.+++++|++|.+ +++|+++||+|||||||
T Consensus 155 ~r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLyl 234 (493)
T 3a74_A 155 QRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHL 234 (493)
T ss_dssp HHHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHH
T ss_pred hhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHHH
Confidence 99999999996 7999999999999999999999999999999999997654445689987 68999999999999999
Q ss_pred hhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCC
Q 008808 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (553)
Q Consensus 307 k~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~ 386 (553)
|+||+||++||||||||||||+++ .|||||||||||||+|. +|+|+|+++|+||+++++.+.+++. + .+..
T Consensus 235 k~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~-d~~dlm~l~E~ll~~l~~~v~~~~~--i-----~~~~ 305 (493)
T 3a74_A 235 KRLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYA-DFRDIMKLTENLIAHIATEVLGTTK--I-----QYGE 305 (493)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHSCSE--E-----EETT
T ss_pred HHHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCC-CHHHHHHHHHHHHHHHHHHHhCCce--E-----eeCC
Confidence 999999999999999999999995 59999999999999998 6999999999999999999987663 2 1223
Q ss_pred ccccCCCCCcccCHHHHHHHHHH------------------cCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCC
Q 008808 387 EPLKYKPKTLRLTFEEGVQMLKD------------------AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPL 448 (553)
Q Consensus 387 ~~~~~~~~~~~i~~~ea~~ll~~------------------~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~ 448 (553)
..+++..||+|+||.||++.+.. .|+++++...+..........++++++.. ++||+|||.
T Consensus 306 ~~i~~~~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~-p~fv~dyP~ 384 (493)
T 3a74_A 306 HLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQ-PTFIYGHPV 384 (493)
T ss_dssp EEEECCSSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCS-CEEEECCBG
T ss_pred EeeccCCCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhcccCC-cEEEECCCc
Confidence 34567779999999999975532 22222111111122233344455555655 466789999
Q ss_pred cCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCCCcce
Q 008808 449 AVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAPPHGG 520 (553)
Q Consensus 449 ~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~pP~~G 520 (553)
.++|| +|++++||++++|||||++|.||+|||+|+|||++|++||++ .|.+++. ++|||+|++||+|||||
T Consensus 385 ~~~pf-~~~~~~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG 463 (493)
T 3a74_A 385 EISPL-AKKNPDDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGG 463 (493)
T ss_dssp GGCTT-BCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEE
T ss_pred ccCCc-cCcCCCCCCeEEEEEEEeCCeEEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCcee
Confidence 99999 799999999999999999999999999999999999999975 3544432 49999999999999999
Q ss_pred eeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 521 FGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 521 ~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
||||||||||+|||++||||||+|||++.
T Consensus 464 ~glGiDRLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 464 LGIGVDRLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp EEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred EEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 99999999999999999999999999863
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=5.5e-97 Score=815.26 Aligned_cols=421 Identities=28% Similarity=0.456 Sum_probs=344.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. + ++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~----~-~~~~~~~l~~e~~V~V~G~v~~~ 78 (580)
T 1l0w_A 5 HYAGSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS----P-AYATAERVRPEWVVRAKGLVRLR 78 (580)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS----T-THHHHTTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhHHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh----h-HHHHHhcCCCCcEEEEEEEEEcC
Confidence 5577888888999999999999999999 9999999999999999998652 2 56778899999999999999887
Q ss_pred CCcc-CCCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHH
Q 008808 173 DVEI-KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (553)
Q Consensus 173 ~~~~-~~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~R 251 (553)
+... +..+|++||+++++.|||+|.+.|+.+.++.++ .....++.++||+|||||||++.++++|++|
T Consensus 79 ~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~-----------~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~R 147 (580)
T 1l0w_A 79 PEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRG-----------EEEKEASEELRLKYRYLDLRRRRMQENLRLR 147 (580)
T ss_dssp SSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGT-----------CCCCCCCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccc-----------cccccCCHHHhhhhhHHHhcCHHHHHHHHHH
Confidence 5322 235788999999999999998447776553221 0123478999999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecC--CC-CceecccChhhHhhhcccCCCceeEEEeceecCCC
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KG-QSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~-~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~ 328 (553)
|+|+++||+||+++||+|||||+|+.++++ ||.+|.|.+ ++ ..+||+||||||||+||+||++||||||||||||+
T Consensus 148 s~i~~~iR~fl~~~gF~EVeTPiL~~s~~e-GAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~ 226 (580)
T 1l0w_A 148 HRVIKAIWDFLDREGFVQVETPFLTKSTPE-GARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDED 226 (580)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCSS-SSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCCCC-CCCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCC
Confidence 999999999999999999999999976555 688998864 43 44559999999999999999999999999999999
Q ss_pred CCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHH-
Q 008808 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML- 407 (553)
Q Consensus 329 ~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll- 407 (553)
++++|| ||||||||||+|. +|+|+|+++|+|++++++.+.+. ++..||+|+||.||++.+
T Consensus 227 ~~~~r~-pEFT~lE~e~af~-d~~dvm~~~E~li~~i~~~v~~~-----------------~~~~pf~rity~eA~~~~g 287 (580)
T 1l0w_A 227 LRADRQ-PDFTQLDLEMSFV-EVEDVLELNERLMAHVFREALGV-----------------ELPLPFPRLSYEEAMERYG 287 (580)
T ss_dssp CCSSCC-SEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHTCC-----------------CCCSSCCEEEHHHHHHHHS
T ss_pred CCCCcC-CCccceeeeecCC-CHHHHHHHHHHHHHHHHHHHhCC-----------------ccCCCccEEEHHHHHHHhc
Confidence 976555 6999999999998 69999999999999999987531 122366777777776543
Q ss_pred ------------------------------------------------------HHcCCC----CCCCCC-CCc------
Q 008808 408 ------------------------------------------------------KDAGVE----IDPLGD-LNT------ 422 (553)
Q Consensus 408 ------------------------------------------------------~~~g~~----~~~~~d-l~~------ 422 (553)
++.|.. +.+..+ +.+
T Consensus 288 ~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~l 367 (580)
T 1l0w_A 288 SDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFL 367 (580)
T ss_dssp SSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHHH
T ss_pred CCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCccccchhhhhh
Confidence 111210 000011 212
Q ss_pred ---------------------------HHHHHHhHHHH---HHh-----CCccEEEeccCCc------------CCCCCC
Q 008808 423 ---------------------------ESERKLGQLVL---EKY-----GTEFYILHRYPLA------------VRPFYT 455 (553)
Q Consensus 423 ---------------------------~~e~~l~~~v~---~~~-----~~~~~ii~~~P~~------------~~pfy~ 455 (553)
..++.||++.. +.+ ...++||+|||.. ++|| +
T Consensus 368 ~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~~~~p~fV~dfP~~~~~~~~~~~~a~~~PF-t 446 (580)
T 1l0w_A 368 EPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPF-T 446 (580)
T ss_dssp GGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCCSCCEEEEECCBSBCCCTTTSCCCBSSCTT-B
T ss_pred hHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhcccccccCeEEEEcCCcccccccccccccccCCc-c
Confidence 23445554322 221 2356888999996 8999 5
Q ss_pred cccCC-------CC-cc-eeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhc----HHHHHHHhhcCCCCcceee
Q 008808 456 MPCHD-------NS-LY-SNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKT----ISTYIDSFRYGAPPHGGFG 522 (553)
Q Consensus 456 ~~~~~-------~~-~~-~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~----~~~yl~a~~~G~pP~~G~G 522 (553)
|++++ || .+ +++||||+||.||+|||+|+|||++|++||+.+|++++. ++|||+||+||+|||||||
T Consensus 447 ~~~~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~g 526 (580)
T 1l0w_A 447 SPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIA 526 (580)
T ss_dssp CBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEE
T ss_pred CCCchhhhhhcCCccceeeeEEEEEeCCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCceEE
Confidence 77765 57 36 999999999999999999999999999999999988765 6799999999999999999
Q ss_pred ecHHHHHHHHcCCCCccccccccCCCCCC
Q 008808 523 VGLERVVMLFCGLNNIRKTSLYPRDPLRI 551 (553)
Q Consensus 523 iGidRLvm~l~g~~nIrdv~~FPr~p~rl 551 (553)
||||||+|+|||.+||||||+|||+++..
T Consensus 527 lGlDRLvMll~g~~sIRdVi~FP~~~~~~ 555 (580)
T 1l0w_A 527 WGLDRLLALMTGSPSIREVIAFPKNKEGK 555 (580)
T ss_dssp EEHHHHHHHHHTCSSGGGGSSSCCCTTSC
T ss_pred EcHHHHHHHHcCCCcHHeEecCCCCCCcc
Confidence 99999999999999999999999999875
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=1.5e-95 Score=806.09 Aligned_cols=432 Identities=26% Similarity=0.421 Sum_probs=350.8
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. .+++++++.|+.||+|.|+|+|..+
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~----~~~~~~~~~l~~e~~V~V~G~v~~~ 78 (585)
T 1c0a_A 4 EYCGQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDR----ADALKLASELRNEFCIQVTGTVRAR 78 (585)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGG----HHHHHHHTTCCTTCEEEEEEEEEEC
T ss_pred eEHHHHHHHhCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCCc----hHHHHHHhcCCCCCEEEEEeEEEcc
Confidence 4567787788999999999999999999 9999999999999999997642 4567788899999999999999887
Q ss_pred CCc---cCCCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 173 DVE---IKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 173 ~~~---~~~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
+.. .+..||++||+++++.|||+|.+.|+.+.+ .++.++||+|||||||++.++++|+
T Consensus 79 ~~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-------------------~~~~e~Rl~~R~LdLR~~~~~~~l~ 139 (585)
T 1c0a_A 79 DEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-------------------VNTEEARLKYRYLDLRRPEMAQRLK 139 (585)
T ss_dssp CTTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-------------------CCCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CcccccccCCCccEEEEEeEEEEEeccCCCCCCccc-------------------cCCHhHhhhchHhhhcCHHHHHHHH
Confidence 542 123578899999999999999843776543 2578999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecC--C-CCceecccChhhHhhhcccCCCceeEEEeceecC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--K-GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~-~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~ 326 (553)
+||+|+++||+||+++||+|||||+|+.++++ ||.+|.|.+ + +..+||+||||||||+||+||++|||||||||||
T Consensus 140 ~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~e-GAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~ 218 (585)
T 1c0a_A 140 TRAKITSLVRRFMDDHGFLDIETPMLTKATPE-GARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD 218 (585)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSSBCCCSS-SSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCcEEEeCCEEecCCCC-CCccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeec
Confidence 99999999999999999999999999976555 688898854 3 4455699999999999999999999999999999
Q ss_pred CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHhhhcCC------------
Q 008808 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVC---------KKELEAVAKQYP------------ 385 (553)
Q Consensus 327 E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~---------~~~i~~~~~~~~------------ 385 (553)
|+++++|| ||||||||||+|. +|+|+|+++|+||+++++.+.+.+ ...++..+..-|
T Consensus 219 E~~~t~r~-pEFT~lE~e~af~-d~~dvm~~~E~li~~i~~~v~~~~~~~f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~ 296 (585)
T 1c0a_A 219 EDLRADRQ-PEFTQIDVETSFM-TAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVA 296 (585)
T ss_dssp CCCBTTBC-SEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEEHHHHHHHHSCSSCCTTSCCCEEECH
T ss_pred CCCCCCcC-cccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhCCCccccceeeHHHHHHHhcCCCccccCCceeEEeh
Confidence 99976655 6999999999998 699999999999999999885422 222322221111
Q ss_pred -------Ccc--------------ccCC--CCCcccCHHHHHHHHHHcCCC-C---CCCC------CCC-----------
Q 008808 386 -------FEP--------------LKYK--PKTLRLTFEEGVQMLKDAGVE-I---DPLG------DLN----------- 421 (553)
Q Consensus 386 -------~~~--------------~~~~--~~~~~i~~~ea~~ll~~~g~~-~---~~~~------dl~----------- 421 (553)
+.. +.+. .++.+.+++++.+++++.|.. + .+.. ++.
T Consensus 297 ~~~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~ 376 (585)
T 1c0a_A 297 DLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEI 376 (585)
T ss_dssp HHHTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEESCGGGGGGGEECTTGGGSCHHH
T ss_pred hhhccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEecccccccccccchhhhhcCHHH
Confidence 000 0000 125666788888888776632 0 0111 011
Q ss_pred -----------------------cHHHHHHhHHHHH---Hh------CCccEEEeccCCc-----------CCCCCCccc
Q 008808 422 -----------------------TESERKLGQLVLE---KY------GTEFYILHRYPLA-----------VRPFYTMPC 458 (553)
Q Consensus 422 -----------------------~~~e~~l~~~v~~---~~------~~~~~ii~~~P~~-----------~~pfy~~~~ 458 (553)
...+..||++..+ .+ ...++||+|||.. ++|| +|++
T Consensus 377 ~~~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~~p~fV~dfP~~~~~~~~~~~a~~~PF-t~~~ 455 (585)
T 1c0a_A 377 IEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPF-TSPK 455 (585)
T ss_dssp HHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCCCEEEEECCBSEEECSSSCEEESSCTT-BCBS
T ss_pred HHHHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccccccEEEEeCCccccccccccccccCCc-cCCC
Confidence 1235566655322 21 1246788999996 8999 5777
Q ss_pred CC-------CCc-c-eeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhc----HHHHHHHhhcCCCCcceeeecH
Q 008808 459 HD-------NSL-Y-SNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKT----ISTYIDSFRYGAPPHGGFGVGL 525 (553)
Q Consensus 459 ~~-------~~~-~-~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~----~~~yl~a~~~G~pP~~G~GiGi 525 (553)
++ ||+ + +++||||+||.||+|||+|+|||++|++||+.+|++++. ++|||+||+||+||||||||||
T Consensus 456 ~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGl 535 (585)
T 1c0a_A 456 DMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGL 535 (585)
T ss_dssp SCCHHHHHHSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEH
T ss_pred chhhhhhccCCcceeeeEEEEEECCEEEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcH
Confidence 65 574 6 999999999999999999999999999999999998865 7899999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccCCCCCCC
Q 008808 526 ERVVMLFCGLNNIRKTSLYPRDPLRIA 552 (553)
Q Consensus 526 dRLvm~l~g~~nIrdv~~FPr~p~rl~ 552 (553)
|||+|+|||.+||||||+|||+++..-
T Consensus 536 DRLvmlltg~~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 536 DRLTMLLTGTDNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp HHHHHHHHTCSCGGGGSSSCCCTTSCB
T ss_pred HHHHHHHcCCCcHHheecCCCCCCccc
Confidence 999999999999999999999998763
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-87 Score=736.08 Aligned_cols=430 Identities=26% Similarity=0.396 Sum_probs=335.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|...+.|++|+|+|||+++|.+ +|++|||+++.||||++.+. .+++++++++.|+.||+|.|+|+|..
T Consensus 12 t~~~~~l~~~~~g~~V~l~GwV~~~R~~----~Fi~LrD~~g~iQvv~~~~~--~~~~~~~~~~~l~~e~~V~V~G~v~~ 85 (617)
T 4ah6_A 12 TNTCGELRSSHLGQEVTLCGWIQYRRQN----TFLVLRDFDGLVQVIIPQDE--SAASVKKILCEAPVESVVQVSGTVIS 85 (617)
T ss_dssp SSCGGGCCGGGTTCEEEEEEEECCCCTT----TEEEEECSSCEEEEECCCSS--SSHHHHHHHHHCCSSCEEEEEEEEEE
T ss_pred ceEHHHhHHHhCCCEEEEEEEeeeecCe----EEEEEEeCCcCEEEEEeCCc--CcHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 3678889888999999999999999963 49999999999999998752 34678888999999999999999987
Q ss_pred CCCc---cCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHH
Q 008808 172 PDVE---IKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGI 247 (553)
Q Consensus 172 ~~~~---~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~i 247 (553)
++.. .+..||++||++++|+||++|. + |+++++.. .+++++||+|||||||++..+++
T Consensus 86 ~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~-----------------~~~ee~Rl~~R~LdLR~~~~~~~ 147 (617)
T 4ah6_A 86 RPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFV-----------------KKTEALRLQYRYLDLRSFQMQYN 147 (617)
T ss_dssp CSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTC-----------------CSCHHHHHHTHHHHTTSHHHHHH
T ss_pred CCccccCccCCCCcEEEEEeEEEEeecCC-CCCccccccc-----------------ccChhhhccceeeeecchHHHHH
Confidence 5432 2345788999999999999998 6 99876532 35789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhH-hCCcEEEecceeeccCCCCCccceeecC--CCCceecccChhhHhhhcccCCCceeEEEecee
Q 008808 248 FRIQSQVGNIFRQFLL-SENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~F 324 (553)
|++||+|+++||+||. ++||+||+||+|+++ +++||.+|.|.+ +|..+||+||||||||+||++|++|||||||||
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~s-t~~GA~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~F 226 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKR-TPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCY 226 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCC-CCSSSCCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccC-CCCCCcCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhhe
Confidence 9999999999999996 799999999999864 677899999865 688999999999999999999999999999999
Q ss_pred cCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHhhhcCC-----Ccccc
Q 008808 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN---------VCKKELEAVAKQYP-----FEPLK 390 (553)
Q Consensus 325 R~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~---------~~~~~i~~~~~~~~-----~~~~~ 390 (553)
|||+++ .+|+||||||||||+|. +|+|+|+++|+|++++++.+.. .|..-+...+..-| .+-.+
T Consensus 227 R~E~~~-t~r~pEFt~lE~e~af~-d~~d~m~~~E~l~~~~~~~~~~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~D 304 (617)
T 4ah6_A 227 RDEGSR-PDRQPEFTQIDIEMSFV-DQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIID 304 (617)
T ss_dssp CCCSSC-SSSCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHSCSSSCCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEE
T ss_pred ecccCC-CCcCcceecceeeecCC-CHHHHHHHHHHHHHHHHHHhcCccCCCceEeEHHHHHHHHcCCCCccccCccccc
Confidence 999985 45699999999999998 6999999999999999864321 11111211111100 00000
Q ss_pred CC------------------C-------------CCcccCHHHHHHHHHH-cCCC------CCCC---CCCC--------
Q 008808 391 YK------------------P-------------KTLRLTFEEGVQMLKD-AGVE------IDPL---GDLN-------- 421 (553)
Q Consensus 391 ~~------------------~-------------~~~~i~~~ea~~ll~~-~g~~------~~~~---~dl~-------- 421 (553)
.. . .+.|-..++..+..+. .|.. .... ..+.
T Consensus 305 Vtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee~~ 384 (617)
T 4ah6_A 305 ISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIMESQR 384 (617)
T ss_dssp CGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTTHHHHHHHHH
T ss_pred HHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccchhhhcCHHHH
Confidence 00 0 0011112222222233 1210 0000 0000
Q ss_pred ----------------------cHHHHHHhHHH---HHHhC-----------CccEEEeccCC-------------cCCC
Q 008808 422 ----------------------TESERKLGQLV---LEKYG-----------TEFYILHRYPL-------------AVRP 452 (553)
Q Consensus 422 ----------------------~~~e~~l~~~v---~~~~~-----------~~~~ii~~~P~-------------~~~p 452 (553)
......||.+. .+.++ ..|.||+|||. .++|
T Consensus 385 ~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhP 464 (617)
T 4ah6_A 385 LELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHP 464 (617)
T ss_dssp HHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCS
T ss_pred HHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCCCeEEEEEeccCCcCCccccccceeeccCC
Confidence 01123345432 12221 24789999996 3689
Q ss_pred CCCcccCCCC---------cceeEEEEEeCCEEEeeceeccCCHHHHHHHHH-HcCCChhcHHHHHHHhhcCCCCcceee
Q 008808 453 FYTMPCHDNS---------LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQ-ACGIDVKTISTYIDSFRYGAPPHGGFG 522 (553)
Q Consensus 453 fy~~~~~~~~---------~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~-~~g~~~~~~~~yl~a~~~G~pP~~G~G 522 (553)
| |||+++|- -.+++|||++||.||+|||+|+||++.|+++|+ ..|++++.+.|||+||+||+|||||||
T Consensus 465 F-T~P~~~d~~~l~~~p~~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a 543 (617)
T 4ah6_A 465 F-TAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIA 543 (617)
T ss_dssp S-CCCCCTTSTHHHHSTTSSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEE
T ss_pred c-CCCChhhHHHhhcChhhhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCCcee
Confidence 9 99987653 248999999999999999999999999999999 789999999999999999999999999
Q ss_pred ecHHHHHHHHcCCCCccccccccCCCC
Q 008808 523 VGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 523 iGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
+|||||||+++|.+||||||+||++.+
T Consensus 544 ~G~dRlvml~~g~~~irdvi~fP~~~~ 570 (617)
T 4ah6_A 544 LGLDRLICLVTGSPSIRDVIAFPKSFR 570 (617)
T ss_dssp EEHHHHHHHHHTCSSGGGSSSSCCCSS
T ss_pred ecHHHHHHHHcCCCchheEEecCCCCC
Confidence 999999999999999999999999765
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=4.8e-77 Score=619.90 Aligned_cols=282 Identities=19% Similarity=0.294 Sum_probs=240.5
Q ss_pred eeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCC-CCccceeecCCC------CceecccChhhHhhhcc
Q 008808 238 DIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE-GGSAVFRLDYKG------QSACLAQSPQLHKQMSI 310 (553)
Q Consensus 238 dLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e-gga~~F~v~~~~------~~~~L~~SPql~lk~li 310 (553)
.+|++ ++++|++||+|++.||+||.++||+||+||+|++++++ +++.+|.|+|++ .++||+||||||||+||
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~ 105 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL 105 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHH
Confidence 34555 78999999999999999999999999999999976654 467899999997 78999999999999999
Q ss_pred cCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcccc
Q 008808 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK 390 (553)
Q Consensus 311 ~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~ 390 (553)
++|++||||||||||||++ |.|||||||||||||+|. +|+|+|+++|+||+++++.
T Consensus 106 ~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~-d~~d~m~~~E~li~~v~~~---------------------- 161 (345)
T 3a5y_A 106 VAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHY-DMYRLMNEVDDLLQQVLDC---------------------- 161 (345)
T ss_dssp HTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHCC----------------------
T ss_pred HcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCC-CHHHHHHHHHHHHHHHHcC----------------------
Confidence 9999999999999999998 999999999999999998 6999999999999999851
Q ss_pred CCCCCcccCHHHHH-----------------HHHHHcCCC-CCCC-CCCCcHHHHHHhHHHHHHhC-CccEEEeccCCcC
Q 008808 391 YKPKTLRLTFEEGV-----------------QMLKDAGVE-IDPL-GDLNTESERKLGQLVLEKYG-TEFYILHRYPLAV 450 (553)
Q Consensus 391 ~~~~~~~i~~~ea~-----------------~ll~~~g~~-~~~~-~dl~~~~e~~l~~~v~~~~~-~~~~ii~~~P~~~ 450 (553)
.||+++||.||+ +++++.|++ +.+. .++.+..|++|++.|+++++ ..++||+|||..+
T Consensus 162 --~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~ 239 (345)
T 3a5y_A 162 --PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQ 239 (345)
T ss_dssp --CCCEEEEHHHHHHHHTCCCTTCCC------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGG
T ss_pred --CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhh
Confidence 134555555554 445556655 4444 46778889999999999886 5678899999999
Q ss_pred CCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHc-------CCChhcH-HHHHHHhhcCCCCcceee
Q 008808 451 RPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQAC-------GIDVKTI-STYIDSFRYGAPPHGGFG 522 (553)
Q Consensus 451 ~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~-------g~~~~~~-~~yl~a~~~G~pP~~G~G 522 (553)
+|| +++++++|++++|||||++|.||+|||+|+|||++|++||+.. |+++..+ +|||+|++||+|||||||
T Consensus 240 ~~~-~~~~~~~~~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~al~yG~PPhgG~g 318 (345)
T 3a5y_A 240 ASL-AQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVA 318 (345)
T ss_dssp CTT-BCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHCCCSEEEEE
T ss_pred Chh-hCCCCCCCCeEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCcEEE
Confidence 999 6889999999999999999999999999999999999999864 8887776 799999999999999999
Q ss_pred ecHHHHHHHHcCCCCccccccccCC
Q 008808 523 VGLERVVMLFCGLNNIRKTSLYPRD 547 (553)
Q Consensus 523 iGidRLvm~l~g~~nIrdv~~FPr~ 547 (553)
||||||+|++||++||||||+|||+
T Consensus 319 lGiDRLvmll~g~~~IRdVi~FPr~ 343 (345)
T 3a5y_A 319 LGVDRLVMLALGAETLAEVIAFSVD 343 (345)
T ss_dssp EEHHHHHHHHHTCSSGGGGSSSCTT
T ss_pred EcHHHHHHHHcCCCcHheEecCCcc
Confidence 9999999999999999999999997
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=1.4e-68 Score=546.81 Aligned_cols=278 Identities=23% Similarity=0.377 Sum_probs=247.9
Q ss_pred cccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeecc--------CCCCCccceeecCCCCceecccChhh
Q 008808 233 NNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG--------SSEGGSAVFRLDYKGQSACLAQSPQL 304 (553)
Q Consensus 233 ~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~--------~~egga~~F~v~~~~~~~~L~~SPql 304 (553)
+|||||||++ ++++|++|++|++.+|+||.++||+||+||+|... .+++ +++|.++|+|.++||++|||+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~~~~~~~~L~~Spe~ 78 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVEIYGVKMRLTHSMIL 78 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEEETTEEEEECSCSHH
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEEcCCCCEEeccChHH
Confidence 5899999999 99999999999999999999999999999999987 6776 999999999999999999999
Q ss_pred HhhhcccCCCceeEEEeceecCCC--CCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 008808 305 HKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAK 382 (553)
Q Consensus 305 ~lk~li~~g~~rVfeIg~~FR~E~--~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~ 382 (553)
|+|+++++|++|||+||||||||+ +++.||+|||||||+||++. +++|+|+++|+|+++++..+.+.+ +.
T Consensus 79 ~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~-~~~~l~~~~e~l~~~l~~~~~~~~-------~~ 150 (294)
T 1nnh_A 79 HKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERA-KMEDIMRLIERLVYGLFRKAEEWT-------GR 150 (294)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHHHH-------SS
T ss_pred HHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCC-CHHHHHHHHHHHHHHHHHHHHhhh-------cc
Confidence 999999999999999999999999 87789999999999999998 699999999999999998775421 11
Q ss_pred cCCCcccc-CCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCC
Q 008808 383 QYPFEPLK-YKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461 (553)
Q Consensus 383 ~~~~~~~~-~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~ 461 (553)
.++ +.. |.|++|.||++ +.|. ..|+ + +.+.. +.||+||| +|||++. |
T Consensus 151 -----~i~~~~~-~~r~~y~ea~~---~~g~----------~~er--~----~~~~~-P~~v~~~P---~pf~~~~---d 198 (294)
T 1nnh_A 151 -----EFPKTKR-FEVFEYSEVLE---EFGS----------DEKA--S----QEMEE-PFWIINIP---REFYDRE---V 198 (294)
T ss_dssp -----CCCCCSS-CEEEEHHHHHH---HTSS----------HHHH--H----HHCSS-CEEEECCC---CCTTBCE---E
T ss_pred -----ccccCCC-ceEeEHHHHHH---HhCC----------hHhh--h----hhcCC-CEEEEcCC---hHHhCCC---C
Confidence 122 233 89999999985 4442 4455 2 22333 56788999 9997654 8
Q ss_pred CcceeEEEEEeC-CE-EEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCC-CcceeeecHHHHHHHHcCCCCc
Q 008808 462 SLYSNSFDVFIR-GE-EIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAP-PHGGFGVGLERVVMLFCGLNNI 538 (553)
Q Consensus 462 ~~~~~~fdl~~~-G~-Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~p-P~~G~GiGidRLvm~l~g~~nI 538 (553)
|+++++||+|++ |. ||+|||+|+|||+.|.+|++.+|+++..++|||+|++||+| ||||||||||||+|+++|++||
T Consensus 199 ~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~I 278 (294)
T 1nnh_A 199 DGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHI 278 (294)
T ss_dssp TTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSG
T ss_pred CCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCH
Confidence 899999999999 95 99999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccccccCCCCCCC
Q 008808 539 RKTSLYPRDPLRIA 552 (553)
Q Consensus 539 rdv~~FPr~p~rl~ 552 (553)
|||++|||+++|+.
T Consensus 279 rdvi~Fp~~~~~~~ 292 (294)
T 1nnh_A 279 AEVQPFPRIPGIPA 292 (294)
T ss_dssp GGGCSSCCCTTSCC
T ss_pred HHEEeccCCCCccc
Confidence 99999999999974
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.93 E-value=1.4e-26 Score=236.00 Aligned_cols=148 Identities=21% Similarity=0.295 Sum_probs=118.6
Q ss_pred CCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHH-----H
Q 008808 178 GATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI-----Q 251 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~-----R 251 (553)
.+.|++||+++++.+|++|..+ |+++++. ..||++||||+|++..++++++ +
T Consensus 22 ~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~----------------------~~~l~~r~l~~R~~~~~~i~~~g~~~~~ 79 (290)
T 3qtc_A 22 SAPALTKSQTDRLEVLLNPKDEISLNSGKP----------------------FRELESELLSRRKKDLQQIYAEERENYL 79 (290)
T ss_dssp --CCCCHHHHHHHHHHCCTTCC----CCSC----------------------HHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCceEEEEhhhhhhhccCCCCCCCCcchh----------------------hhhhhhHHHHhccchHHHHhccccccHH
Confidence 3457899999999999999877 8865431 2389999999999999999999 9
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCC------CCCcccee-ecCCCCceecc--cChhhHhhhcc----cCCCceeE
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFR-LDYKGQSACLA--QSPQLHKQMSI----CGDFGRVF 318 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~F~-v~~~~~~~~L~--~SPql~lk~li----~~g~~rVf 318 (553)
+++.+.+|++|...||.||.||+|++... .++...+. +.+++..++|| +||+++.++.. .++..|+|
T Consensus 80 ~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlf 159 (290)
T 3qtc_A 80 GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIF 159 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEE
Confidence 99999999999999999999999986432 11211222 34567889999 99999966543 25679999
Q ss_pred EEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 319 eIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
|||+|||+|+. +.+|++||||+|+++++.
T Consensus 160 eiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~ 188 (290)
T 3qtc_A 160 EIGPCYRKESD-GKEHLEEFTMLVFWQMGS 188 (290)
T ss_dssp EEEEEECCCSC-SSSCCSEEEEEEEEEEST
T ss_pred EEcCEEecCCC-CCcCcchheEEEEEEEcC
Confidence 99999999975 788999999999999865
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.89 E-value=2.3e-21 Score=193.85 Aligned_cols=273 Identities=16% Similarity=0.197 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHhH-----hCCcEEEecceeeccCCC-----CC-ccceeecCC---CCceecccChhhHhhhccc-C
Q 008808 248 FRIQSQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GG-SAVFRLDYK---GQSACLAQSPQLHKQMSIC-G 312 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~e-----gg-a~~F~v~~~---~~~~~L~~SPql~lk~li~-~ 312 (553)
++-....|+++++||. +.|+++|..|+++...++ .| .+|..++.. |..+-..+|--.||++++. .
T Consensus 5 ~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y 84 (330)
T 12as_A 5 YIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQH 84 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhC
Confidence 4556778899999999 999999999998753321 12 334444333 7788999999999999986 4
Q ss_pred CC---ceeEEEeceecCCCC-CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcc
Q 008808 313 DF---GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP 388 (553)
Q Consensus 313 g~---~rVfeIg~~FR~E~~-~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~ 388 (553)
|| +.+|.-.++.|.++. -|.+|.-+|+|.|||..+.. -+..|+.++++++.|+..+...-. .+...|...+
T Consensus 85 ~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~-~~R~~~~Lk~tV~~Iy~~ik~tE~----~~~~~y~l~p 159 (330)
T 12as_A 85 DFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGD-GERQFSTLKSTVEAIWAGIKATEA----AVSEEFGLAP 159 (330)
T ss_dssp TCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCT-TCCSHHHHHHHHHHHHHHHHHHHH----HHHHHSCCCC
T ss_pred CCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccc-cchHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCc
Confidence 58 999999999998654 68999999999999999874 688899999998888877753211 2233341111
Q ss_pred ccCCCCCcccCHHHHHHHHHHcCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEEeccCCcCC--CCCCcccCCCCcce
Q 008808 389 LKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYILHRYPLAVR--PFYTMPCHDNSLYS 465 (553)
Q Consensus 389 ~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~--pfy~~~~~~~~~~~ 465 (553)
. +.+++..+|.+|+.++ .+ +++ .+-|..+. ++++ .+||.+.+..++ -++....|+.+.+.
T Consensus 160 ~-Lp~~i~fitsqeL~~~---YP-------~lt~keRE~~i~----ke~g--aVFii~IG~~L~~g~~HD~RaPDYDDW~ 222 (330)
T 12as_A 160 F-LPDQIHFVHSQELLSR---YP-------DLDAKGRERAIA----KDLG--AVFLVGIGGKLSDGHRHDVRAPDYDDWS 222 (330)
T ss_dssp C-SCSSCEEEEHHHHHHH---SS-------SSCHHHHHHHHH----HHHS--EEEEECCSSCCSSSCCSSCCCTTTBCCS
T ss_pred C-CCCceEEEeHHHHHHH---cC-------CCChHHHHHHHH----HhhC--CEEEEecCCccCCCCcCcCcCCCCCCcc
Confidence 1 3446677888887643 22 232 23344332 3333 466677775432 14555666666777
Q ss_pred ---------eEEEEEe-C----C-EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcC-CCCcceeeecHHHHH
Q 008808 466 ---------NSFDVFI-R----G-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYG-APPHGGFGVGLERVV 529 (553)
Q Consensus 466 ---------~~fdl~~-~----G-~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLv 529 (553)
...|+++ + + .||.|++.| .|++.|.++++..|.......+|..++..| +|++.|+|||..||+
T Consensus 223 t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~er~~~~yh~~ll~g~LP~TiGGGIGQSRLc 301 (330)
T 12as_A 223 TPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRLT 301 (330)
T ss_dssp SBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEEEHHHHH
T ss_pred ccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCChhhccHHHHHHHcCCCCccccccccHHHHH
Confidence 8999998 4 4 899999999 999999999999999888888999999999 699999999999999
Q ss_pred HHHcCCCCcccccc
Q 008808 530 MLFCGLNNIRKTSL 543 (553)
Q Consensus 530 m~l~g~~nIrdv~~ 543 (553)
|+|++..+|.+|.+
T Consensus 302 mflL~k~HIGEVQ~ 315 (330)
T 12as_A 302 MLLLQLPHIGQVQA 315 (330)
T ss_dssp HHHHTCSCGGGTSC
T ss_pred HHHhccchhheeec
Confidence 99999999999964
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.74 E-value=8.9e-18 Score=170.62 Aligned_cols=184 Identities=26% Similarity=0.424 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-c--ccee-ecCCCCceeccc--ChhhHh--hhcccCCCc---ee
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-S--AVFR-LDYKGQSACLAQ--SPQLHK--QMSICGDFG---RV 317 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-a--~~F~-v~~~~~~~~L~~--SPql~l--k~li~~g~~---rV 317 (553)
.++.+.+|++|...||.||.||.|.... ..|. . ..|. +++.+..++||. +|.+.. ...+ ..-+ |+
T Consensus 74 ~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~-~~~~~Plrl 152 (288)
T 3dsq_A 74 LELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELE-RLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHT-TTSCSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHH-hCCCCCEEE
Confidence 6789999999999999999999997421 1111 1 1222 233446789984 566552 2222 2223 99
Q ss_pred EEEeceecCCCCCCCCCcCcccceeEEecccc---CHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCC
Q 008808 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK---HYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPK 394 (553)
Q Consensus 318 feIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~---~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 394 (553)
|+||+|||+|.. +..|.+||+|+|+++.... ++.++..+++++
T Consensus 153 feiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~l--------------------------------- 198 (288)
T 3dsq_A 153 FEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPLEERHQRLEDMARWV--------------------------------- 198 (288)
T ss_dssp EEEEEEECSCCS-SSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHH---------------------------------
T ss_pred EEEeeEEecCCC-CCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHH---------------------------------
Confidence 999999999986 6789999999999875321 012222211111
Q ss_pred CcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC
Q 008808 395 TLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG 474 (553)
Q Consensus 395 ~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G 474 (553)
++..|++ ++-+.. | +....+.++|++++|
T Consensus 199 ------------l~~LGl~-------------------------~~~~~~--~------------s~e~~~~~~~l~~~~ 227 (288)
T 3dsq_A 199 ------------LEAAGIR-------------------------EFELVT--E------------SSVVYGDTVDVMKGD 227 (288)
T ss_dssp ------------HHHHTCC-------------------------CCEEEE--C------------CCCSSCCCEEEEETT
T ss_pred ------------HHHcCCC-------------------------CcEEec--C------------CcceEEEEEEEEeCC
Confidence 1112210 111211 1 011224568999999
Q ss_pred EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcCCCCcccccc
Q 008808 475 EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 475 ~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
.||++|+.+.+..+. ++| .|||+|||||+|||+|+++|.+|||++.-
T Consensus 228 ~eig~~Gv~p~vl~~----------------------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~~ 275 (288)
T 3dsq_A 228 LELASGAMGPHFLDE----------------------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMAR 275 (288)
T ss_dssp EEEEEEEEESCTTTT----------------------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGSS
T ss_pred EEEEEEEecHHHHHH----------------------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCCC
Confidence 999999976665421 578 48999999999999999999999998754
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.56 E-value=9.2e-14 Score=144.26 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeecc-----C--CCC--C----ccceeecC-CC-----------Cceecc--cChhh
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAG-----S--SEG--G----SAVFRLDY-KG-----------QSACLA--QSPQL 304 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~-----~--~eg--g----a~~F~v~~-~~-----------~~~~L~--~SPql 304 (553)
+++++.||++|...||.||.+|.+... + .+. . .+.|.+.. .. ....|| .||.+
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~l 183 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ 183 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHH
Confidence 456788999999999999999988541 1 111 1 22455431 11 333455 56655
Q ss_pred HhhhcccCC--CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHHHH
Q 008808 305 HKQMSICGD--FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 305 ~lk~li~~g--~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~~i 365 (553)
. ++|..+ --|+||||+|||+++. +.+|+|||+|||+++... -++.+++.+++.++..+
T Consensus 184 l--r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 184 V--RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp H--HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred H--HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 4 455432 3589999999999875 678999999999998764 25777777777666543
No 22
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.52 E-value=1.1e-13 Score=141.05 Aligned_cols=111 Identities=9% Similarity=0.116 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeecc-----C--CC--CCcc----ceeecCCCCceecccChhhHhhhcccCC----
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAG-----S--SE--GGSA----VFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~-----~--~e--gga~----~F~v~~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
.+++.+.||++|..+||.||++|.+... + .+ ..|. +|.+ ....+||+|.-..+..+++.+
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l---~e~~vLRtsl~p~ll~~l~~N~~~~ 131 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYI---TDEILMRTHTSPVQARTMEKRNGQG 131 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBS---SSSEEECSSSHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEE---cCcceeeccCHHHHHHHHHhcCCCC
Confidence 4567888999999999999999988542 1 10 0010 2333 255688888888878888877
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~~i 365 (553)
..|+||||+|||+++. +.+|+|||+||+++++.. .++.+++.+++.++..+
T Consensus 132 ~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 132 PVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp CEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 7899999999999864 567999999999999862 25788888877776543
No 23
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.30 E-value=1e-11 Score=127.49 Aligned_cols=106 Identities=11% Similarity=0.161 Sum_probs=68.9
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccC--------C-CCCcc----ceeecCCCCceecc--cChhhHhhhcccCCC--c
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGS--------S-EGGSA----VFRLDYKGQSACLA--QSPQLHKQMSICGDF--G 315 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~--------~-egga~----~F~v~~~~~~~~L~--~SPql~lk~li~~g~--~ 315 (553)
.+.+.||++|...||.|+.+|.+.... . ++.|+ .|.+ +....|| +||.+ -+.|..+- -
T Consensus 111 ~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i---~e~~vLRThtsp~~--lr~l~~~~~pi 185 (327)
T 3pco_A 111 RTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF---DTTRLLRTQTSGVQ--IRTMKAQQPPI 185 (327)
T ss_dssp HHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS---SSSCEECSCTHHHH--HHHHTTCCSSC
T ss_pred HHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe---CCCceecccCCHHH--HHHHHhCCCCe
Confidence 456778999999999999999875321 0 11111 2333 3444565 55655 23344433 3
Q ss_pred eeEEEeceecCCCCCCCCCcCcccceeEEecc-ccCHHHHHHHHHHHHHHH
Q 008808 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI-KKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~-~~~~~~~m~~~e~ll~~i 365 (553)
|+||+|+|||++ . +.+|+|+|+|+|..+.. .-++.++..+++.++..+
T Consensus 186 rifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 186 RIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp CBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred eEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 3 78999999999976542 123666666666555543
No 24
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.18 E-value=6.8e-11 Score=127.46 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=33.7
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDR 360 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ 360 (553)
--|+|+||+|||+|.. +.+|+|+|+|+|..+.-. -++.++..+++.
T Consensus 347 PiriFeiGrVFR~d~~-DatHlpeFhQlegl~~~~~v~f~dLKg~Le~ 393 (508)
T 3l4g_A 347 PVKYFSIDRVFRNETL-DATHLAEFHQIEGVVADHGLTLGHLMGVLRE 393 (508)
T ss_dssp CEEEEEEEEEECCSCC-CSSSCSEEEEEEEEEEEESCCHHHHHHHHHH
T ss_pred CceEEEEccEEecCCC-CCCcCCeEEEEEEEEECCCCCHHHHHHHHHH
Confidence 3589999999999985 789999999999876421 134444444433
No 25
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.61 E-value=2e-07 Score=100.96 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=33.9
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
-|+||||+|||.+...+..|.+||+||+..+... .++.++..+++.++
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL 254 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALL 254 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHH
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4899999999987531457999999999987642 13555555554443
No 26
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=98.60 E-value=9.5e-07 Score=93.71 Aligned_cols=91 Identities=12% Similarity=0.181 Sum_probs=58.8
Q ss_pred HHHHHHHHhHhC--------CcEEEec-ceeecc---------CCCCCccce-eecCCCCceeccc--ChhhHhhhcccC
Q 008808 254 VGNIFRQFLLSE--------NFVEIHT-PKLIAG---------SSEGGSAVF-RLDYKGQSACLAQ--SPQLHKQMSICG 312 (553)
Q Consensus 254 i~~~iR~fl~~~--------gF~EV~T-P~l~~~---------~~egga~~F-~v~~~~~~~~L~~--SPql~lk~li~~ 312 (553)
+.+.||++|... ||.|+.+ |.+.+. ..++-|+.- .+-|.+...-||+ ||-+.. +|..
T Consensus 53 ~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~--~l~~ 130 (415)
T 3cmq_A 53 IKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWD--LLHA 130 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHH--HHHT
T ss_pred HHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHH--HHHH
Confidence 455567777665 8999999 666432 111222211 1113455566775 454433 3455
Q ss_pred CCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 313 g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
+..|+|++|.|||.+.. +..|.|+|.|+|--.-|
T Consensus 131 ~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 131 GLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp TCSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred CCCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 67799999999999976 78999999999965444
No 27
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=98.59 E-value=3.8e-06 Score=88.83 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC------CCCccceee-cCCCCceecccC--hhhH---hhhcc-cCC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLAQS--PQLH---KQMSI-CGD 313 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~~S--Pql~---lk~li-~~g 313 (553)
-.+++..|.+.+|+.|...||.||.||++..... ....+.|.+ +--|..+.||-- |.+. .+.+- ...
T Consensus 23 ~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 102 (400)
T 3od1_A 23 WYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTAPIARLVASSLKDRAY 102 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHHHHHHHHHHHCSSSCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCHHHHHHHHHhhcccCCC
Confidence 3567888999999999999999999999954321 112235665 334677777632 2221 11111 122
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
.-|.|+||+|||+|... .-+.-||+|+++|.--.
T Consensus 103 P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~ 136 (400)
T 3od1_A 103 PLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGD 136 (400)
T ss_dssp CEEEEEEEEEECCCC----CCCSEEEEEEEEEESC
T ss_pred CeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECC
Confidence 45999999999999763 34668999999997543
No 28
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=98.57 E-value=7.4e-07 Score=93.44 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC-----CC-CC-ccceee-cCCCCceecccC--hhhHh---hhcc-cCC
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-----SE-GG-SAVFRL-DYKGQSACLAQS--PQLHK---QMSI-CGD 313 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-----~e-gg-a~~F~v-~~~~~~~~L~~S--Pql~l---k~li-~~g 313 (553)
.+++..|.+.+|+.|...||.||.||++.... .+ .. .+.|.+ +--|..+.||-- |.+.. +.+- ...
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 116 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRT 116 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCCCCEEEECCcCHHHHHHHHHhccccCCC
Confidence 46788899999999999999999999986321 11 12 345654 334567777632 22221 1110 123
Q ss_pred CceeEEEeceecCCCCC-----CCCCcCcccceeEEecccc-CH---HHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSY-----THRHLCEFTGLDVEMEIKK-HY---SEVMDIVDRLFV 363 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~-----t~rHl~EFt~lE~e~a~~~-~~---~~~m~~~e~ll~ 363 (553)
.-|.|+||+|||+|... ..-+.-||+|+++|.--.. +. -+++.++.+++.
T Consensus 117 P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~ 175 (373)
T 3rac_A 117 PIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASA 175 (373)
T ss_dssp CCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999751 2335689999999974332 11 245555555443
No 29
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=98.55 E-value=1.4e-06 Score=93.67 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCCc----cceee-cCCCCceecccC--hhhH---hhhccc-CC
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRL-DYKGQSACLAQS--PQLH---KQMSIC-GD 313 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v-~~~~~~~~L~~S--Pql~---lk~li~-~g 313 (553)
.+++..|.+.+|+.|...||.||.||++..... ..|. ..|.+ +--|..+.||-- |.+. .+.... ..
T Consensus 43 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 122 (456)
T 3lc0_A 43 MRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLL 122 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSHHHHHHHHHHSCTTCCS
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcCHHHHHHHHHhcCcccCC
Confidence 467889999999999999999999999864321 1122 25654 334677777632 2222 111110 11
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
.-|.|+||+|||+|... .-+.-||+|+++|.--
T Consensus 123 P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G 155 (456)
T 3lc0_A 123 PAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVG 155 (456)
T ss_dssp SEEEEECCEEECCCC------CCEEEEEEEEEES
T ss_pred CEEEEEeccEEecCCCC-CCCccceEEEEEEEEc
Confidence 46999999999999763 3456899999999743
No 30
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.44 E-value=2.5e-06 Score=92.51 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=32.0
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRL 361 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~l 361 (553)
-|+||||+|||++...+.+|.+||+||+.-+... -++.|+...++.+
T Consensus 218 vrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~l 265 (549)
T 2du7_A 218 LKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGL 265 (549)
T ss_dssp EEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred eEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHH
Confidence 4899999999987531346999999999876532 1344444444443
No 31
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.25 E-value=2.2e-05 Score=85.79 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
--|+||||+|||++...+.+|.+||.||+.-+... -++.|+...++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (648)
T 2odr_B 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (648)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 35899999999986531457999999999876532 13555554444443
No 32
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.24 E-value=2.3e-05 Score=85.87 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
--|+||||+|||++...+.+|.+||.||+.-+... -++.|+...++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL 273 (685)
T 2odr_D 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (685)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 35899999999986531457999999999876532 13555554444443
No 33
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.24 E-value=2.4e-05 Score=85.68 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
--|+||||+|||++...+.+|.+||.||+.-+... -++.|+...++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (665)
T 2odr_A 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (665)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 35899999999986531457999999999876532 13555554444443
No 34
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.20 E-value=3e-05 Score=85.18 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
--|+||||+|||++...+.+|.+||.||+.-+... -++.|+...++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL 273 (701)
T 2odr_C 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (701)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 35899999999986531457999999999876532 13555555444443
No 35
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.19 E-value=6.9e-06 Score=87.46 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C---CCC-ccceeecCCCCceecccChh-----hHhhhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---EGG-SAVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~---egg-a~~F~v~~~~~~~~L~~SPq-----l~lk~li~~ 312 (553)
.-.+++..|.+++|+.+...||.||.||.|.... + +.. ...|.+. +..+||+-..+ +|.+.++..
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~ 247 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKE 247 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhcccc
Confidence 3456789999999999999999999999997432 1 111 1245443 67788884443 455544432
Q ss_pred -C-CceeEEEeceecCCCCCCC------CCcCcccceeEEeccccCHHHHHHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~~~t~------rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~ 367 (553)
. .-|+|++|+|||+|.+... --..||+|+|++. |.. -++..+..++++..+..
T Consensus 248 ~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~-pe~s~~~~~e~i~~~~~ 308 (425)
T 2dq3_A 248 ENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVH-PDTSYDELEKLVKDAEE 308 (425)
T ss_dssp TTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECC-HHHHHHHHHHHHHHHHH
Confidence 2 4699999999999974211 1346999999975 443 35566666666654443
No 36
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.08 E-value=6e-06 Score=87.29 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceeecCCCCceecccChhhH-----hhhcccC-
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRLDYKGQSACLAQSPQLH-----KQMSICG- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v~~~~~~~~L~~SPql~-----lk~li~~- 312 (553)
-.+++..|.+.+|+.|...||.||.||+|.... ..|. ...|.++--+..++|+-..+.. .+.+...
T Consensus 29 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 108 (401)
T 1evl_A 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYR 108 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhhh
Confidence 457788999999999999999999999997532 0121 1345544456788998665533 3322211
Q ss_pred C-CceeEEEeceecCCCCCCCC----CcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~t~r----Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
. .-|+|+||+|||+|.+ +.+ -..||+|+|+|. |. +..++....++++..
T Consensus 109 ~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~-~~~~~~~e~~e~i~~ 162 (401)
T 1evl_A 109 DLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FC-TEEQIRDEVNGCIRL 162 (401)
T ss_dssp GCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EE-CGGGHHHHHHHHHHH
T ss_pred hCChhhccccceecCCCC-cccccccccCcEEecceEE-eC-CHHHHHHHHHHHHHH
Confidence 1 2599999999999985 222 347999999994 65 345555544455443
No 37
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.02 E-value=5e-06 Score=88.23 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCCc------cceee-cCCCCceecccChhh-----Hhhhcc
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGS------AVFRL-DYKGQSACLAQSPQL-----HKQMSI 310 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egga------~~F~v-~~~~~~~~L~~SPql-----~lk~li 310 (553)
-.+++..|.+.+|+.|...||.||.||+|.... +-||. ..|.+ +--|..++||--... |.+...
T Consensus 15 ~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~~~~~~ 94 (420)
T 1qe0_A 15 DSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKM 94 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHHHhccc
Confidence 456888999999999999999999999997532 21121 24544 223577888743322 222222
Q ss_pred c---CCCceeEEEeceecCCCCCCCCCcCcccceeEEecccc
Q 008808 311 C---GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 349 (553)
Q Consensus 311 ~---~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 349 (553)
. ...-|+|+||+|||+|... .-+.-||+|+|+|.-...
T Consensus 95 ~~~~~lP~r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 95 QGNPNQPIKLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp GGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred cccCCCCeEEEEecCEeecCCCc-CCCcccEEEeeEEEECCC
Confidence 2 1246999999999999653 345689999999975543
No 38
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=97.97 E-value=2.3e-05 Score=84.30 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CC----CCccceee-cCCCCceecccC-----hhhHhhhccc
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE----GGSAVFRL-DYKGQSACLAQS-----PQLHKQMSIC 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~e----gga~~F~v-~~~~~~~~L~~S-----Pql~lk~li~ 311 (553)
.-.+++.+|.+.+|+.|...||.||.||+|.... +. -+...|.+ +--|..++|+.. +.++...+..
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s 144 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKS 144 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhh
Confidence 4567889999999999999999999999997532 11 11234554 334678899863 2344433221
Q ss_pred C--CCceeEEEeceecCCCCCCCC----CcCcccceeEEeccccCHHHHHHHHHHH
Q 008808 312 G--DFGRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMDIVDRL 361 (553)
Q Consensus 312 ~--g~~rVfeIg~~FR~E~~~t~r----Hl~EFt~lE~e~a~~~~~~~~m~~~e~l 361 (553)
. ---|+|+||+|||+|-. . + ...||+|+|+|.-. .+..++-..+..|
T Consensus 145 ~~~lP~rl~~ig~~fR~E~~-p-~~Gl~R~REF~q~d~~~f~-~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 145 YKSLPLNLYHIQWKFRDEQR-P-RFGVMRGREFLMKDAYSFD-VDEAGARKSYNKM 197 (458)
T ss_dssp GGGCSEEEEEEEEEECCCSS-C-BTGGGBCSEEEEEEEEEEE-SSHHHHHHHHHHH
T ss_pred ccccCeeeEEecCEeeCCCC-C-CCCcccccceEEeEEEEEE-CCHHHHHHHHHHH
Confidence 1 12599999999999942 2 3 34899999999753 3445444444433
No 39
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.93 E-value=4.7e-05 Score=78.88 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---------C-CCCccceee-cCCCCceecccChhhHhhhccc----
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---------S-EGGSAVFRL-DYKGQSACLAQSPQLHKQMSIC---- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---------~-egga~~F~v-~~~~~~~~L~~SPql~lk~li~---- 311 (553)
-.+++..|.+.+|+.|...||.||.||++.... . ....+.|.+ +--|+.+.||--.-...=++++
T Consensus 35 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~ 114 (344)
T 1z7m_A 35 QVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKD 114 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcHHHHHHHHhcCC
Confidence 356788999999999999999999999986421 1 112235654 3356777887322111111221
Q ss_pred CCCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 312 ~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
...-|.|+||+|||+|... .-+.-||+|+++|.--
T Consensus 115 ~~P~rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g 149 (344)
T 1z7m_A 115 STSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFG 149 (344)
T ss_dssp CCCEEEEEEEECCCCCC--------CCEEEEEEEES
T ss_pred CCCeEEEEECcEEccCCCC-CCCcceeEEEEEEEEc
Confidence 1346999999999999763 4467899999999743
No 40
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.85 E-value=6.9e-05 Score=79.89 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---C-CC---Cccceee-cCCCCceecccChhhHhhhcccC-----C
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---S-EG---GSAVFRL-DYKGQSACLAQSPQLHKQMSICG-----D 313 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~-eg---ga~~F~v-~~~~~~~~L~~SPql~lk~li~~-----g 313 (553)
-.+++..|.+.+|+-|...||.||.||++.... . -| +.+.|.+ +--|+.+.||--.-...=+.++. .
T Consensus 19 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t~~~aR~~~~~~~~~l 98 (434)
T 1wu7_A 19 DMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQR 98 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTCTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCChHHHHHHHHhcCCCCC
Confidence 356788999999999999999999999997532 1 11 1235665 33567788874322222222221 2
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEecccc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 349 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 349 (553)
.-|.|+||++||+|... .-+.-||+|+++|.-..+
T Consensus 99 P~rl~~~g~vfR~erp~-~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 99 PLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 133 (434)
T ss_dssp SEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred CeEEEEEcCeecCCCCC-CCCccceEEeeEEEEcCC
Confidence 35999999999999753 335689999999975443
No 41
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.84 E-value=3e-05 Score=86.88 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc-----cceee-cCCC-CceecccChhh-----Hhhhcc
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS-----AVFRL-DYKG-QSACLAQSPQL-----HKQMSI 310 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v-~~~~-~~~~L~~SPql-----~lk~li 310 (553)
.-.+++..|.+.+|+.+...||.||.||.|.... ..|+. ..|.+ +--+ ..++|+--..- |.+.+.
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~ 348 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPH 348 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhhh
Confidence 3467899999999999999999999999997532 01221 23443 2235 67888754332 333221
Q ss_pred cC-C-CceeEEEeceecCCCCCCCCC----cCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 311 CG-D-FGRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 311 ~~-g-~~rVfeIg~~FR~E~~~t~rH----l~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
.. . .-|+|+||+|||+|.+ ..+| .-||||+|+|. |. +-+.+.+...+++..
T Consensus 349 syr~LPlrl~~~g~~fR~E~~-~~~~GL~R~ReF~Q~d~~~-f~-~~~~~~d~~~e~i~~ 405 (645)
T 1nyr_A 349 SYRELPIRIAELGTMHRYEAS-GAVSGLQRVRGMTLNDSHI-FV-RPDQIKEEFKRVVNM 405 (645)
T ss_dssp BGGGCCEEEEEEEEEECCCCT-TTCBTTTBCSEEEEEEEEE-EE-CGGGHHHHHHHHHHH
T ss_pred hccCCCeEEEEeccEEecCCC-ccccCcceeeeEEEccEEE-Ec-CHHHHHHHHHHHHHH
Confidence 11 1 2499999999999986 2333 47999999997 65 345555554554443
No 42
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.80 E-value=0.00017 Score=76.64 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCC-----ccceeecCCCCceecccChhhHhhhcccC-----
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG-----SAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egg-----a~~F~v~~~~~~~~L~~SPql~lk~li~~----- 312 (553)
-.+++..|.+++|+.+.+.||.||.||.|.... + |. ...|.+. +.++||+-..+..+-.++..
T Consensus 165 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~--d~~l~L~Pt~e~~~~~~~~~~~~s~ 241 (421)
T 1ses_A 165 LALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGT-GHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPY 241 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHH-TCTTTTGGGSCBBT--TSSEEECSSTHHHHHHTTTTCEEEG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhc-CCCCcCchhcEEEc--CCeEEEeecCcHHHHHHhcccccCc
Confidence 456788999999999999999999999996431 1 21 1244443 46788886665444333322
Q ss_pred -C-CceeEEEeceecCCCC------CCCCCcCcccceeEEeccccC-HHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKH-YSEVMDIVDRLFV 363 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~~------~t~rHl~EFt~lE~e~a~~~~-~~~~m~~~e~ll~ 363 (553)
. --|+|++|+|||+|-+ .+.--.-||+|.|++.. ... .++..+..++++.
T Consensus 242 ~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f-~~p~~e~s~~~~~e~~~ 300 (421)
T 1ses_A 242 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVL-TEASLEASDRAFQELLE 300 (421)
T ss_dssp GGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEE-ECSCHHHHHHHHHHHHH
T ss_pred hhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEE-eCCCHHHHHHHHHHHHH
Confidence 1 2499999999999952 11113469999999864 333 3666666666554
No 43
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=97.77 E-value=0.00011 Score=79.36 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC------ccceeecCC-----CCceecccChh-----hHhh
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHKQ 307 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~SPq-----l~lk 307 (553)
-.+++..|.+.+|+.|...||.||.||+|..... ++| ...|.+..- +..++||--.+ +|.+
T Consensus 43 g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~ 122 (477)
T 1hc7_A 43 GYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHh
Confidence 3567889999999999999999999999975431 122 124555432 56789986554 4555
Q ss_pred hcccC-C-CceeEEEeceecCCCC-CCCCCcCcccceeEEeccccCHHHHHHHHHHHH
Q 008808 308 MSICG-D-FGRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (553)
Q Consensus 308 ~li~~-g-~~rVfeIg~~FR~E~~-~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll 362 (553)
.+... . --|+|+||+|||+|.. +..--.-||+|+|.+..+. +..+....+..|+
T Consensus 123 ~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~-~~~~ad~E~~~~l 179 (477)
T 1hc7_A 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHA-TREEAEEEVRRML 179 (477)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEES-SHHHHHHHHHHHH
T ss_pred hhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeC-CHHHHHHHHHHHH
Confidence 44322 2 2599999999999953 2211346999999998776 4566655555554
No 44
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.77 E-value=7.3e-05 Score=82.55 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC-----ccceee-cCCCCceecccChh-----hHhhhccc
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRL-DYKGQSACLAQSPQ-----LHKQMSIC 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v-~~~~~~~~L~~SPq-----l~lk~li~ 311 (553)
.-.+++..|.+.+|+.|...||.||.||+|..... .|. ...|.+ +--+..++||--.+ +|...+..
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s 124 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINS 124 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccC
Confidence 34678899999999999999999999999975320 021 234554 33467889974442 34443321
Q ss_pred C-C-CceeEEEeceecCCCCCCCCC----cCcccceeEEeccccCHHHHHHHHHHH
Q 008808 312 G-D-FGRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDRL 361 (553)
Q Consensus 312 ~-g-~~rVfeIg~~FR~E~~~t~rH----l~EFt~lE~e~a~~~~~~~~m~~~e~l 361 (553)
. . --|+|+||+|||+|.+ . +| .-||+|+|.|.- ..+-.++...++.+
T Consensus 125 ~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f-~~~~~~~~~e~~~~ 177 (572)
T 2j3l_A 125 YKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSF-HADEASLDQSYRDY 177 (572)
T ss_dssp GGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEE-ESSHHHHHHHHHHH
T ss_pred hhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEE-cCCHHHHHHHHHHH
Confidence 1 2 2499999999999986 3 33 479999999974 33455555555443
No 45
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.76 E-value=0.00011 Score=78.79 Aligned_cols=114 Identities=11% Similarity=0.170 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCcc-----ceeecCCCCceecccChhhH-----hhhcccC-
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGSA-----VFRLDYKGQSACLAQSPQLH-----KQMSICG- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga~-----~F~v~~~~~~~~L~~SPql~-----lk~li~~- 312 (553)
-.+++..|.+++++.+.+.||.||.||.|.... ..|... .|.+. +..+||+-..+.. .+..+..
T Consensus 192 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~LrPt~e~~~~~~~~~~~~s~~ 269 (455)
T 2dq0_A 192 IVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE--DEDLYLIPTAEHPLAGMHANEILDGK 269 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT--TSSCEECSSTHHHHHHTTTTEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec--CCcEEEcCcCcHHHHHHHHhCccCch
Confidence 456788999999999999999999999997532 113322 34432 5678898665443 3322221
Q ss_pred C-CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
. --|+|++|+|||+|-+. +.--.-||+|.|++ .|.. -++..+..++++..
T Consensus 270 ~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~-pe~s~~~~~e~l~~ 326 (455)
T 2dq0_A 270 DLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSR-PEESWEWHEKIIRN 326 (455)
T ss_dssp TCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEEC-TTTHHHHHHHHHHH
T ss_pred hCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecC-HHHHHHHHHHHHHH
Confidence 2 25999999999999741 11134699999998 4654 46777766666643
No 46
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.73 E-value=8.9e-05 Score=78.60 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CC-CC------ccceee-cCCCCceeccc--ChhhHhhhc---c
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SE-GG------SAVFRL-DYKGQSACLAQ--SPQLHKQMS---I 310 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~e-gg------a~~F~v-~~~~~~~~L~~--SPql~lk~l---i 310 (553)
-.+++..|.+.+|+-|...||.||.||++.... .. |. .+.|.+ +--|+.+.||- .|.+..-.+ +
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~ar~~~~~~~ 95 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGM 95 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchHHHHHHHHhccc
Confidence 356788999999999999999999999996532 11 21 135665 33567788873 222222111 1
Q ss_pred c--CCCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 311 C--GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 311 ~--~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
. .-.-|.|+||++||+|... .-+.-||+|+++|.-.
T Consensus 96 ~~~~lP~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g 133 (421)
T 1h4v_B 96 KVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALG 133 (421)
T ss_pred cccCCCeEEEEecCeecCCCCC-CCCcccEEEccEEEEC
Confidence 1 1135999999999999753 3356899999999743
No 47
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.73 E-value=0.00023 Score=77.67 Aligned_cols=116 Identities=11% Similarity=0.153 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC--------CCCCccceeecCCCCceecccChhhHhhhcccCC----
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--------SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~--------~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
.-.+++.+|++++|+.+.+.||.||.||.|.... ..-+.+.|.+. +.++||+-..+..+=.+....
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~--~~~~~L~PT~E~~~~~l~~~~i~s~ 350 (536)
T 3err_A 273 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPY 350 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET--TTTEEECSSTHHHHHHHTTTCEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec--CCCEEEccCCcHHHHHHHhcccccH
Confidence 4568899999999999999999999999997431 11123456664 367888766554332222111
Q ss_pred ---CceeEEEeceecCCCC------CCCCCcCcccceeEEeccccC-HHHHHHHHHHHHHH
Q 008808 314 ---FGRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKH-YSEVMDIVDRLFVT 364 (553)
Q Consensus 314 ---~~rVfeIg~~FR~E~~------~t~rHl~EFt~lE~e~a~~~~-~~~~m~~~e~ll~~ 364 (553)
-=|+|++|+|||+|-+ .+.-..-||||.|.+. |... +++..+..++|+..
T Consensus 351 ~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~ 410 (536)
T 3err_A 351 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLEN 410 (536)
T ss_dssp GGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHH
T ss_pred hhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHH
Confidence 2489999999999962 1122456999999985 4432 24777776666643
No 48
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.72 E-value=6.2e-05 Score=81.12 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCC------ccceee-cCC-CCceecccChhhHhhhccc---
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG------SAVFRL-DYK-GQSACLAQSPQLHKQMSIC--- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egg------a~~F~v-~~~-~~~~~L~~SPql~lk~li~--- 311 (553)
-.+++..|.+.+|+.|...||.||.||+|.... +-|. .+.|.+ +-- |..+.||--.-...=++++
T Consensus 45 ~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~ 124 (467)
T 4e51_A 45 DAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHN 124 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcc
Confidence 356789999999999999999999999996432 1122 135655 334 6778887332222212211
Q ss_pred ---CCCceeEEEeceecCCCCCCCCCcCcccceeEEec
Q 008808 312 ---GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEME 346 (553)
Q Consensus 312 ---~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a 346 (553)
...-|.|+||+|||+|.+.. -+.-||+|+++|.-
T Consensus 125 ~~~~lP~r~~~~g~vfR~E~~~~-gR~ReF~Q~d~ei~ 161 (467)
T 4e51_A 125 MLYDGPKRLWYIGPMFRHERPQR-GRYRQFHQVGVEAL 161 (467)
T ss_dssp TTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEE
T ss_pred cccCCCEEEEEEccEEccCCCCC-CCcCceEEEEEEEE
Confidence 12469999999999997643 45689999999974
No 49
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.71 E-value=4.3e-05 Score=82.35 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeecc-----CCCCCcc-ceeecCC----------------CCceecccC--h
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-----SSEGGSA-VFRLDYK----------------GQSACLAQS--P 302 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~-----~~egga~-~F~v~~~----------------~~~~~L~~S--P 302 (553)
-.+++..|.+.+|+.|...||.||.||++... ..+.... .|.+.-. |..+.||-- |
T Consensus 25 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~ 104 (465)
T 3net_A 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCCChH
Confidence 35678889999999999999999999998421 1122223 5665322 577788732 2
Q ss_pred hh---Hhhhcc-cCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCH-----HHHHHHHHHHHHH
Q 008808 303 QL---HKQMSI-CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY-----SEVMDIVDRLFVT 364 (553)
Q Consensus 303 ql---~lk~li-~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~-----~~~m~~~e~ll~~ 364 (553)
.+ +.+... ....-|.|+||+|||.|... .-+.-||+|+++|.--.++. -|++.++-+++..
T Consensus 105 ~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~ 174 (465)
T 3net_A 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEA 174 (465)
T ss_dssp HHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCeEEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHH
Confidence 22 222211 12235999999999999763 44568999999997433221 2455555555543
No 50
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.70 E-value=0.0001 Score=78.19 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCC------ccceee-cCCCCceecccChhhHhhhccc----
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG------SAVFRL-DYKGQSACLAQSPQLHKQMSIC---- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egg------a~~F~v-~~~~~~~~L~~SPql~lk~li~---- 311 (553)
-.+++..|.+.+|+-|...||.||.||++.... +.|. .+.|.+ +--|+.+.||--.-...=+.++
T Consensus 17 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~aR~~~~~~~ 96 (423)
T 1htt_A 17 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGL 96 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchHHHHHHHHhccc
Confidence 356788999999999999999999999997532 1121 135665 3356777787422221111111
Q ss_pred --CCCceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 312 --GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 312 --~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
...-|.|+||++||+|... .-+.-||+|+++|.-..
T Consensus 97 ~~~~P~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~ 134 (423)
T 1htt_A 97 LYNQEQRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGL 134 (423)
T ss_dssp STTCCEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESC
T ss_pred ccCCCeEEEEEcCEecCCCCC-CCccceeEEeeEEEECC
Confidence 1246999999999999753 33568999999997543
No 51
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.69 E-value=0.00012 Score=78.80 Aligned_cols=119 Identities=17% Similarity=0.109 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHh-HhCCcEEEecceeeccC----C---CCC-ccceeecC---CCCceecccChh-----hHhhhc
Q 008808 247 IFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGS----S---EGG-SAVFRLDY---KGQSACLAQSPQ-----LHKQMS 309 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl-~~~gF~EV~TP~l~~~~----~---egg-a~~F~v~~---~~~~~~L~~SPq-----l~lk~l 309 (553)
-.+++..|.+++|+.+ .+.||.||.||+|.... + +.. .+.|.+.- -+..++|+--.+ +|.+.+
T Consensus 63 g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~ 142 (460)
T 3uh0_A 63 GAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKD 142 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhcc
Confidence 4678899999999999 99999999999996431 1 111 12455533 257788875543 333332
Q ss_pred cc-CC-CceeEEEeceecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHH
Q 008808 310 IC-GD-FGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (553)
Q Consensus 310 i~-~g-~~rVfeIg~~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~ 367 (553)
.. .. --|+|++|+|||+|.+. ...-.-||+|.|.+. |.. -++..+.+++++..+..
T Consensus 143 ~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~-~e~~~~e~~~~i~~~~~ 203 (460)
T 3uh0_A 143 RSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCT-PSQVKSEIFNSLKLIDI 203 (460)
T ss_dssp CBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHHHHHHH
T ss_pred ccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcC-HHHHHHHHHHHHHHHHH
Confidence 22 11 24899999999999752 211346999999995 653 35566665555554443
No 52
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.67 E-value=0.00015 Score=77.94 Aligned_cols=116 Identities=18% Similarity=0.147 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCC-----CccceeecCC-----CCceecccChhh-----Hhh
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEG-----GSAVFRLDYK-----GQSACLAQSPQL-----HKQ 307 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~eg-----ga~~F~v~~~-----~~~~~L~~SPql-----~lk 307 (553)
-.+++..|.+.+|+.|...||.||.||+|.... ..| +.+.|.+..- +..++||--.+- |.+
T Consensus 37 g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~ 116 (459)
T 1nj8_A 37 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 116 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHH
Confidence 356788999999999999999999999997532 112 1235665433 577888854443 444
Q ss_pred hcccC-C-CceeEEEeceecCCCCCCCC--CcCccc-ceeEEeccccCHHHHHHHHHHHHH
Q 008808 308 MSICG-D-FGRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 308 ~li~~-g-~~rVfeIg~~FR~E~~~t~r--Hl~EFt-~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
.+... . --|+|+||+|||+|...+.- -.-||+ |.|.+..+. +-.++...+++++.
T Consensus 117 ~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~-~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 117 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHS-TKEEAENQVKEAIS 176 (459)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEES-SHHHHHHHHHHHHH
T ss_pred hhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEEC-CHHHHHHHHHHHHH
Confidence 33221 2 24999999999999751111 246999 999997665 45666555544544
No 53
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.64 E-value=0.00036 Score=75.50 Aligned_cols=117 Identities=10% Similarity=0.082 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC-------CC-CccceeecCC---------CCceecccChhhHhhh
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------EG-GSAVFRLDYK---------GQSACLAQSPQLHKQM 308 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-------eg-ga~~F~v~~~---------~~~~~L~~SPql~lk~ 308 (553)
.-.+++..|++++|+.+.+.||.||.||.|..... ++ +...|.+.-- +.++||+-..+..+=.
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~ 278 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAA 278 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHH
Confidence 45688999999999999999999999999964321 11 1235666432 4578998666554432
Q ss_pred cccC------C-CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCH-HHHHHHHHHHHH
Q 008808 309 SICG------D-FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHY-SEVMDIVDRLFV 363 (553)
Q Consensus 309 li~~------g-~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~-~~~m~~~e~ll~ 363 (553)
+... . -=|+|++++|||+|-+. +.--.-||+|.|.+. |...- ++..+..++|+.
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e~s~~e~e~ml~ 346 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDNKSWEMFEEMIT 346 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHH
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChHHHHHHHHHHHH
Confidence 2221 1 24899999999999641 111346999999984 44321 136666666654
No 54
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.63 E-value=0.0001 Score=82.57 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceeecCCCCceecccChhh-----HhhhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRLDYKGQSACLAQSPQL-----HKQMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v~~~~~~~~L~~SPql-----~lk~li~~ 312 (553)
.-.+++..|.+.+|+.+.+.||.||.||.|.... ..|. ...|.++--+..++|+--.+- |.+.+...
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy 348 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSY 348 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEG
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceeeecCCceEEecCCCCHHHHHHHHhhhhhc
Confidence 4467899999999999999999999999997532 0121 224553334677888754432 33332221
Q ss_pred -C-CceeEEEeceecCCCCCCCC----CcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~~~t~r----Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
. --|+|+||+|||+|.+ +.+ -.-||||.|.+. |. +-+++...+++++.
T Consensus 349 r~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~-~~~~~~~e~~~~i~ 402 (642)
T 1qf6_A 349 RDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FC-TEEQIRDEVNGCIR 402 (642)
T ss_dssp GGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EE-CGGGHHHHHHHHHH
T ss_pred cccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-Ec-CHHHHHHHHHHHHH
Confidence 1 2499999999999986 222 247999999997 65 34455444444443
No 55
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.62 E-value=0.00041 Score=75.05 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC--------CCCc-cceeecCC-CCceecccChhhHhhhcccC----
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGS-AVFRLDYK-GQSACLAQSPQLHKQMSICG---- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--------egga-~~F~v~~~-~~~~~L~~SPql~lk~li~~---- 312 (553)
-.++..+|++++++.+.+.||.||.||.|..... .-+. +.|.+.-- +.++||+-..|..+=.+...
T Consensus 218 GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s 297 (501)
T 1wle_A 218 GALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVA 297 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccCC
Confidence 4577888999999999999999999999975321 1122 45666432 46789986666433222211
Q ss_pred --C-CceeEEEeceecCCCC-----CCCCCcCcccceeEEeccccCH-HHHHHHHHHHHHH
Q 008808 313 --D-FGRVFETGPVFRAEDS-----YTHRHLCEFTGLDVEMEIKKHY-SEVMDIVDRLFVT 364 (553)
Q Consensus 313 --g-~~rVfeIg~~FR~E~~-----~t~rHl~EFt~lE~e~a~~~~~-~~~m~~~e~ll~~ 364 (553)
. -=|+|++++|||+|-. .+.--.-||+|.|.+. |...- ++..+..++|+..
T Consensus 298 ~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~-f~~pe~e~s~~~~e~~l~~ 357 (501)
T 1wle_A 298 FRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFG-VTGPGLEQSSELLEEFLSL 357 (501)
T ss_dssp GGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEE-EECSSHHHHHHHHHHHHHH
T ss_pred cccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEE-EeCCcHHHHHHHHHHHHHH
Confidence 1 2599999999999954 1111246999999986 44332 6777777777653
No 56
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.56 E-value=0.00016 Score=77.68 Aligned_cols=118 Identities=11% Similarity=0.179 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC-----ccceeecCCCCceecccChhhHhhhcccC-----
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v~~~~~~~~L~~SPql~lk~li~~----- 312 (553)
.-.+++.+|++++|+.+.++||.||.||.|..... .|. .+.|.+.--+.++||.-..+..+=.+...
T Consensus 206 ~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy 285 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTE 285 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccch
Confidence 45688999999999999999999999999975321 111 23566643367899987766554222211
Q ss_pred -C-CceeEEEeceecCCC-CC-----CCCCcCcccceeEEeccccCHHH--HHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAED-SY-----THRHLCEFTGLDVEMEIKKHYSE--VMDIVDRLFVTI 365 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~-~~-----t~rHl~EFt~lE~e~a~~~~~~~--~m~~~e~ll~~i 365 (553)
. -=|+|++++|||+|- +. +.--.-||+|.|.+. |.. -++ ..+..++|+...
T Consensus 286 ~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~-pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 286 LKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCS-PRQEESWRHLEDMITTS 346 (484)
T ss_dssp CSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EEC-SSTTHHHHHHHHHHHHH
T ss_pred hhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeC-cchHHHHHHHHHHHHHH
Confidence 1 248999999999996 21 111245999999984 543 344 677777666543
No 57
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.54 E-value=0.00013 Score=79.28 Aligned_cols=116 Identities=20% Similarity=0.186 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC------ccceeecCC-----CCceecccChh-----hHhh
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG------SAVFRLDYK-----GQSACLAQSPQ-----LHKQ 307 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg------a~~F~v~~~-----~~~~~L~~SPq-----l~lk 307 (553)
-.+++..|.+.+|+.|.. ||.||.||+|.... .+.| -..|.+..- +..++|+--.+ +|.+
T Consensus 70 g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 148 (501)
T 1nj1_A 70 GFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFAL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHh
Confidence 356778899999999999 99999999997532 1111 234555432 46788885544 3444
Q ss_pred hcccC-C-CceeEEEeceecCCCCCCCC--CcCccc-ceeEEeccccCHHHHHHHHHHHHHH
Q 008808 308 MSICG-D-FGRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 308 ~li~~-g-~~rVfeIg~~FR~E~~~t~r--Hl~EFt-~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
..... . --|+|+||+|||+|...+.= -.-||+ |+|.+..+. +.++....+++++..
T Consensus 149 ~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~-~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 149 WVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHA-TASEAEEQVERAVEI 209 (501)
T ss_dssp HCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEES-SHHHHHHHHHHHHHH
T ss_pred hhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEEC-CHHHHHHHHHHHHHH
Confidence 33322 2 25999999999999751111 235999 999987666 467776666666543
No 58
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.48 E-value=0.00036 Score=75.82 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHH-HhHhCCcEEEecceeeccC---CCCCc-----cceeec-----C--------------------
Q 008808 246 GIFRIQSQVGNIFRQ-FLLSENFVEIHTPKLIAGS---SEGGS-----AVFRLD-----Y-------------------- 291 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~-fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v~-----~-------------------- 291 (553)
.-.+++..|.+++|+ ++...||.||.||+|.... .-|.. ..|.+. .
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 345678899999996 6889999999999997431 01111 234442 0
Q ss_pred ------CCCceecccChhh-----HhhhcccC-C-CceeEE-EeceecCCCC--CCCCCcCcccceeEEeccccCHHHHH
Q 008808 292 ------KGQSACLAQSPQL-----HKQMSICG-D-FGRVFE-TGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVM 355 (553)
Q Consensus 292 ------~~~~~~L~~SPql-----~lk~li~~-g-~~rVfe-Ig~~FR~E~~--~t~rHl~EFt~lE~e~a~~~~~~~~m 355 (553)
-+..+||+-..+. |....... . --|+|+ ||+|||+|.. +..--.-||+|.|++. |. +-++..
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~-~pe~s~ 386 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IG-TKEEVL 386 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EE-EHHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-Ee-ChHHHH
Confidence 2467888854432 22222221 1 238999 9999999942 1123456999999996 66 567877
Q ss_pred HHHHHHHHH
Q 008808 356 DIVDRLFVT 364 (553)
Q Consensus 356 ~~~e~ll~~ 364 (553)
+..++++..
T Consensus 387 ee~ee~i~~ 395 (522)
T 2cja_A 387 KCAEELHDR 395 (522)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777733
No 59
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.46 E-value=0.00026 Score=76.31 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceeecCCCCceecccChhh-----Hhhhccc--
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRLDYKGQSACLAQSPQL-----HKQMSIC-- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v~~~~~~~~L~~SPql-----~lk~li~-- 311 (553)
-.+++..|.+.+|+.|...||.||.||+|.... ..|+ ...|.++.-|..++||--.+. |.+.+-.
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r 127 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHR 127 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhcc
Confidence 357888999999999999999999999997532 1122 235666555778889844432 3332211
Q ss_pred ---CCCceeEEEeceecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 312 ---GDFGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 312 ---~g~~rVfeIg~~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
.---|+|+||+|||+|... +---.-||+|+|.|.- . +..+..+.+.+++..+
T Consensus 128 ~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f-~-~~~~~~de~~e~i~~~ 185 (471)
T 3a32_A 128 SKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHII-V-PGGRVIDVVYDVFEEM 185 (471)
T ss_dssp GGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEE-E-EGGGHHHHHHHHHHHH
T ss_pred ccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEE-c-ChHHHHHHHHHHHHHH
Confidence 1235999999999999752 1113469999999964 3 2345555444555433
No 60
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.41 E-value=0.00028 Score=76.75 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC------ccceeecCC-----CCceecccChh-----hHh
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg------a~~F~v~~~-----~~~~~L~~SPq-----l~l 306 (553)
.-++++..|.+.+|+.+.+.||.||.||+|.... -++| .+.|.+..- +.+++|+-..+ +|.
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~ 132 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFS 132 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHH
Confidence 3457788999999999999999999999997533 1222 225555432 46789985554 344
Q ss_pred hhccc-CC-CceeEEEeceecCCCCC--CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 307 QMSIC-GD-FGRVFETGPVFRAEDSY--THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 307 k~li~-~g-~~rVfeIg~~FR~E~~~--t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
+.+.. .. --|+|++|+|||+|-.. .---.-||+|.|.+.... +.+++.+.++.|+...
T Consensus 133 ~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~-~~e~a~~e~~~~l~~~ 194 (518)
T 3ial_A 133 KWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHA-TAEDAVSQLSDYWKVI 194 (518)
T ss_dssp HHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEES-SHHHHHHHHHHHHHHH
T ss_pred hhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEEC-CHHHHHHHHHHHHHHH
Confidence 43332 12 24999999999999421 211346999999997534 5788877777776433
No 61
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.41 E-value=0.00039 Score=75.65 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCCcc-----ceeecCC-----CCceecccChh-----hHhh
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGSA-----VFRLDYK-----GQSACLAQSPQ-----LHKQ 307 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egga~-----~F~v~~~-----~~~~~L~~SPq-----l~lk 307 (553)
-++++..|.+.+|+.+.+.||.||.||+|.... ..|... .|.+..- +.+++|+--.+ +|.+
T Consensus 60 G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~ 139 (519)
T 4hvc_A 60 AYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAK 139 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHh
Confidence 457788999999999999999999999996432 122222 3434221 23578865433 3455
Q ss_pred hcccC-C-CceeEEEeceecCCCCCCC--CCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 308 MSICG-D-FGRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 308 ~li~~-g-~~rVfeIg~~FR~E~~~t~--rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
.+... + --|+|++|+|||+|-+.++ --.-||+|.|.+..|. +.++..+.++.++..
T Consensus 140 ~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~-~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 140 WVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFA-TMEEAAEEVLQILDL 199 (519)
T ss_dssp HCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEES-SHHHHHHHHHHHHHH
T ss_pred hccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEec-CHHHHHHHHHHHHHH
Confidence 44321 2 3599999999999943221 1235999999998776 567777777766643
No 62
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.40 E-value=0.00026 Score=76.10 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC-----ccceeecCCCCceecccChhhHhhhcccCC----
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v~~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
.-.+++.++++++++.+.+.||.||.||.|..... .|. .+.|.+.--+.++||.-..|.-+-.++..-
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S 262 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFES 262 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCeEEEeccccHHHHHHHhcccccc
Confidence 45688999999999999999999999999975321 111 235655322567888755554433332221
Q ss_pred -----CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 314 -----FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 314 -----~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
-=|+|++++|||+|-.. +.--.-||+|.|.+. |.. -++..+..++|+.
T Consensus 263 ~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~-pe~s~~e~e~ml~ 321 (485)
T 3qne_A 263 PAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTE-PEKSWEEFDRMIG 321 (485)
T ss_dssp HHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHH
T ss_pred chhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeC-HHHHHHHHHHHHH
Confidence 24799999999999631 112345999999985 553 4666666666654
No 63
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.34 E-value=0.00083 Score=71.91 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc---cceee-cCCCCceeccc--ChhhHhhhcccC---CC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS---AVFRL-DYKGQSACLAQ--SPQLHKQMSICG---DF 314 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga---~~F~v-~~~~~~~~L~~--SPql~lk~li~~---g~ 314 (553)
-.+++..|.+.+|+.|...||.||.||++.... ...|. ..|.+ +--|+.+.||- .+.+.- +++. .-
T Consensus 27 ~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd~T~~~aR--~~~~~~~~p 104 (464)
T 4g84_A 27 QMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFAR--YLAMNKLTN 104 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSCSHHHHHH--HHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCCcCcHHHHH--HHHhcCCCC
Confidence 357788999999999999999999999995321 11121 24543 23467777773 122211 1110 13
Q ss_pred ceeEEEeceecCCCCC-CCCCcCcccceeEEec
Q 008808 315 GRVFETGPVFRAEDSY-THRHLCEFTGLDVEME 346 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~-t~rHl~EFt~lE~e~a 346 (553)
-|.|+||++||.|... ..-+.-||+|+++|.-
T Consensus 105 ~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~ 137 (464)
T 4g84_A 105 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIA 137 (464)
T ss_dssp EEEEEEEEEECCCC------CCSEEEEEEEEEE
T ss_pred ceeEEEecceeccCCccccCccceeeecceecc
Confidence 5899999999999642 2235579999999974
No 64
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.28 E-value=0.00047 Score=69.01 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=58.2
Q ss_pred HHHHH--HHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecc--cChhhHhhhccc-C-CCceeEEEeceecCCC
Q 008808 255 GNIFR--QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA--QSPQLHKQMSIC-G-DFGRVFETGPVFRAED 328 (553)
Q Consensus 255 ~~~iR--~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~--~SPql~lk~li~-~-g~~rVfeIg~~FR~E~ 328 (553)
.+.+| +.|...||.||.||++.....-.. +.| ++--|+.+.|| ..|.+....+-- . ..-|.|++|+|||.|.
T Consensus 7 e~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f-~d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e~ 84 (275)
T 1usy_A 7 EKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF-LDRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSG 84 (275)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE-EETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEET
T ss_pred HHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc-CCCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEecCC
Confidence 34445 999999999999999965332111 234 34456777777 223333222211 1 3469999999999998
Q ss_pred CCCCCCcCcccceeEEeccc
Q 008808 329 SYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 329 ~~t~rHl~EFt~lE~e~a~~ 348 (553)
+.. -||||+++|.--.
T Consensus 85 ~~~----Ref~Q~g~ei~g~ 100 (275)
T 1usy_A 85 SDL----VAEYQLGLEKVPR 100 (275)
T ss_dssp TEE----EEEEEEEEEEESC
T ss_pred CCC----CeeeEeCEEEecC
Confidence 633 6999999997543
No 65
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.26 E-value=0.00087 Score=73.03 Aligned_cols=99 Identities=14% Similarity=0.202 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc---cceee-cCCCCceeccc--ChhhHhhhcccC---C
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS---AVFRL-DYKGQSACLAQ--SPQLHKQMSICG---D 313 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga---~~F~v-~~~~~~~~L~~--SPql~lk~li~~---g 313 (553)
.-.+++..|.+.+|+.|...||.||.||++.... ...|. ..|.+ +--|+.+.||- .+.+. ++++. .
T Consensus 79 ~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~a--R~~~~~~~~ 156 (517)
T 4g85_A 79 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA--RYLAMNKLT 156 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHH--HHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHH--HHHHhCCCC
Confidence 3457889999999999999999999999985321 11121 13443 23467777773 11111 11111 1
Q ss_pred CceeEEEeceecCCCCCC-CCCcCcccceeEEec
Q 008808 314 FGRVFETGPVFRAEDSYT-HRHLCEFTGLDVEME 346 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t-~rHl~EFt~lE~e~a 346 (553)
--|.|+||+|||.|.... .=+.-||+|+++|.-
T Consensus 157 p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~ 190 (517)
T 4g85_A 157 NIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIA 190 (517)
T ss_dssp CEEEEEEEEEECCCC-------CCEEEEEEEEEE
T ss_pred CceeEEEeceEeccCcccccCccceeeeeceecc
Confidence 348999999999996421 224579999999974
No 66
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=97.18 E-value=0.007 Score=69.17 Aligned_cols=92 Identities=17% Similarity=0.066 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCCC----CCcc-ceee-cCCC-CceecccChhhHhhhcccC----C--CceeEE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSE----GGSA-VFRL-DYKG-QSACLAQSPQLHKQMSICG----D--FGRVFE 319 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~e----gga~-~F~v-~~~~-~~~~L~~SPql~lk~li~~----g--~~rVfe 319 (553)
++.+.+|+.|...||.|+.|..+++...- +... .+.+ |... ....||+|-=--+=..+.. + -=|+||
T Consensus 497 ~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFE 576 (795)
T 2rhq_B 497 HKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYE 576 (795)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEE
Confidence 45677899999999999999988754211 1122 2443 2222 2335765532222222221 1 249999
Q ss_pred EeceecCCCCCCCCCcCcccceeEEec
Q 008808 320 TGPVFRAEDSYTHRHLCEFTGLDVEME 346 (553)
Q Consensus 320 Ig~~FR~E~~~t~rHl~EFt~lE~e~a 346 (553)
||+|||.+.. +..| +||++|..-+.
T Consensus 577 iG~Vf~~d~~-~~~~-~e~~~la~l~~ 601 (795)
T 2rhq_B 577 IGRVFFGNGE-GELP-DEVEYLSGILT 601 (795)
T ss_dssp EEEEEECCCT-TSCC-EEEEEEEEEEE
T ss_pred EeeEEecCCc-ccCc-chhhEEEEEEE
Confidence 9999997542 2256 89999987544
No 67
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=96.93 E-value=0.0019 Score=70.15 Aligned_cols=32 Identities=3% Similarity=0.099 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhH--hCCcEEEecceeecc
Q 008808 247 IFRIQSQVGNIFRQFLL--SENFVEIHTPKLIAG 278 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~--~~gF~EV~TP~l~~~ 278 (553)
-.+++..|.+.+|+.+. ..||.||.||+|...
T Consensus 38 G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~ 71 (505)
T 1ati_A 38 GVELKNNLKQAWWRRNVYERDDMEGLDASVLTHR 71 (505)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCH
Confidence 35688899999999999 899999999999754
No 68
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.90 E-value=0.0029 Score=67.59 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhH-hCC-cEEEecceeeccCCCCCccceeecCCCCceeccc--ChhhHh---hhcccC--C-Ccee
Q 008808 248 FRIQSQVGNIFRQFLL-SEN-FVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQ--SPQLHK---QMSICG--D-FGRV 317 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~-~~g-F~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~--SPql~l---k~li~~--g-~~rV 317 (553)
..+|+.|.+..|+.+. .+| +.||.||+.....+-|+-+-|. +|||. +|-.+. ..+... . -=|+
T Consensus 104 ~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~~-------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~i 176 (459)
T 3ikl_A 104 VELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFR-------GGLRENLLHGALEHYVNCLDLVNKRLPYGL 176 (459)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCCT-------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEE
T ss_pred HHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhhc-------ceECCCCChhHHHHHhhhhhhccccCCeEE
Confidence 4678999985555554 366 7789999865444555555554 77874 333222 111111 1 2379
Q ss_pred EEEeceecCCCC-CCCCC----cCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 318 FETGPVFRAEDS-YTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 318 feIg~~FR~E~~-~t~rH----l~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
.+||+|||||-. .+.+| .-||||.|++. |. +-++..+..+.++.
T Consensus 177 aqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~-~Pe~~~e~~~~~~~ 225 (459)
T 3ikl_A 177 AQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FT-PPRTSNQWLDFWLR 225 (459)
T ss_dssp EEEEEEECCC----------CCCCEEEEEEEEE-EE-CGGGHHHHHHHHHH
T ss_pred EEEeeeeecccccccCCCCcccccceeeeeEEE-Ee-ChhHHHHHHHHHHH
Confidence 999999999941 13333 36999999974 44 34555555444443
No 69
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.86 E-value=0.0017 Score=66.55 Aligned_cols=117 Identities=14% Similarity=0.057 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC-----ccceeecCC-------------------------
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRLDYK------------------------- 292 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v~~~------------------------- 292 (553)
..-+++..|.+++|+ ..+.||.||.||.|..... -|. -..|.+.-+
T Consensus 62 ~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~ 140 (346)
T 3mf2_A 62 LYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLS 140 (346)
T ss_dssp HHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEE
T ss_pred hHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccC
Confidence 445778889999999 8899999999999974321 111 113444221
Q ss_pred CCceecccChh-----hHhhh-cccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 293 GQSACLAQSPQ-----LHKQM-SICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 293 ~~~~~L~~SPq-----l~lk~-li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
+.++||.-.-+ +|... .+...--|+-++|+|||.|.+.+.-.+-+|||.|+-. |. .-+++.+..++|+..+
T Consensus 141 ~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~-tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 141 PADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IG-TPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EE-SHHHHHHHHHHHHHHH
T ss_pred CCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-Ee-CHHHHHHHHHHHHHHH
Confidence 23577765543 34432 2333346777899999999976667778999999864 44 6788888888887643
No 70
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.46 E-value=0.0028 Score=71.37 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhH-hCCcEEEecceeec
Q 008808 248 FRIQSQVGNIFRQFLL-SENFVEIHTPKLIA 277 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~ 277 (553)
.+++..|.+.+|+.|. ..||.||.||+|..
T Consensus 101 ~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 101 CALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 5788999999999998 56999999999974
No 71
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.014 Score=50.40 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=68.2
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee---------ccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCc
Q 008808 91 EWTVVGALNGSLKDQEVLIRGRVHTT---------RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (553)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~---------R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (553)
.++.|++|++... .++|+|||.++ +..| ++.=++|.|..+.|+|++-.. ...+|...|..|+
T Consensus 3 ~~~~Is~L~p~~~--~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~f~~~l~eG~ 73 (114)
T 1ynx_A 3 PIFAIEQLSPYQN--VWTIKARVSYKGEIKTWHNQRGDG-KLFNVNFLDTSGEIRATAFND------FATKFNEILQEGK 73 (114)
T ss_dssp CBCCGGGCCTTTC--CCEEEEEEEEEEEEEEEECSSCEE-EEEEEEEEETTEEEEEEECHH------HHHHHHHHSCSSS
T ss_pred ceEEHHHCCCCCC--ceEEEEEEEEeccceEEecCCCCc-eEEEEEEECCCCeEEEEECHH------HHHHHHhhcccCc
Confidence 3566777765433 36788888743 2345 788899999999999999653 3345778899999
Q ss_pred eEEEEEE-EecCCCccCCCceeEEEEEeEEEEeecCC
Q 008808 162 IVDVIGV-VSVPDVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 162 iV~V~G~-v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
++.|.+. |....+.-+.....+||....-..+.+|.
T Consensus 74 vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 74 VYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp EEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred EEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 9999984 44433333333346999997767777663
No 72
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=96.21 E-value=0.0077 Score=64.49 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHh--HhCCcEEEecceeeccCC---C--CC---cccee---------------e--cCCCCceeccc
Q 008808 248 FRIQSQVGNIFRQFL--LSENFVEIHTPKLIAGSS---E--GG---SAVFR---------------L--DYKGQSACLAQ 300 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl--~~~gF~EV~TP~l~~~~~---e--gg---a~~F~---------------v--~~~~~~~~L~~ 300 (553)
.+++..|.+++|+.+ ...|+.||.||+|..... + |. ++-+. + .+++.++|||-
T Consensus 62 ~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRP 141 (454)
T 1g5h_A 62 VELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRA 141 (454)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECS
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecc
Confidence 578899999899774 589999999999975431 1 11 11111 0 12345678874
Q ss_pred --ChhhH---hhhcccC--CC-ceeEEEeceec---CCCCCCCCC----cCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 301 --SPQLH---KQMSICG--DF-GRVFETGPVFR---AEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 301 --SPql~---lk~li~~--g~-~rVfeIg~~FR---~E~~~t~rH----l~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
+|-.+ ++.+-.. .+ =+++|||+||| ||-+ + +| .-||||.|.+. |. +.++..+..+.++.
T Consensus 142 eta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s-~-~~Gl~R~REF~q~E~~~-F~-~pe~~~e~~~~~~~ 215 (454)
T 1g5h_A 142 TLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ-T-PSSVTRVGEKTEASLVW-FT-PTRTSSQWLDFWLR 215 (454)
T ss_dssp CSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EE-CHHHHHHHHHHHHH
T ss_pred cccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc-C-CCCccccCceehhheEE-Ee-CHhhHHHHHHHHHH
Confidence 33222 2222121 22 48999999999 6964 2 43 57999999984 55 56666555544443
No 73
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.14 E-value=0.017 Score=49.70 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=62.9
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee-------ccCC--CceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCce
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esi 162 (553)
+..|.+|. .|+.|.+.|+|.++ +..| +++.++.|.|+++.|.+.+-.... . ....+..|++
T Consensus 7 ~~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~---~----~~~~l~~G~v 76 (115)
T 2k50_A 7 MDTISKLE---EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENI---K----LLKKFREGDV 76 (115)
T ss_dssp CCCTTTCC---TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGG---G----GGGTCCTTSE
T ss_pred eEEHHHCC---CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchh---h----hhhcCCCCCE
Confidence 34566664 58899999999988 2345 589999999999999999876421 1 1256999999
Q ss_pred EEEEEEEecCCCccCCCceeEEEEEeEEEEeec
Q 008808 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 163 V~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
|.|.|.+....- .+.++|.+.+...+.+
T Consensus 77 v~i~g~~v~~~f-----~g~~qL~~~~~~~i~~ 104 (115)
T 2k50_A 77 IRIKDVNIRGGF-----GGRKEAHLMPRSTVEV 104 (115)
T ss_dssp EEEEEEEECCCS-----SSSCEEEECTTCCEEE
T ss_pred EEEEeeEEcccc-----CCeEEEEECCCceEEE
Confidence 999998854311 1347777755444433
No 74
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=95.98 E-value=0.061 Score=49.20 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=61.4
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
+.|.|.|.|.+++... +-..+.|-|++| .|.|++-.+.. .........+..|++|.|.|.|..- .++.
T Consensus 48 ~~V~IvGiVv~~~~~~-~~~~ytIDD~TG~~I~cv~w~~~~---~~~~~~~~~l~~G~~VrV~G~v~~f-------r~~r 116 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-GKHVLTVDDCSGMVLRVVFIIQDD---FSMSKRAISMSPGNVVCVFGKINSF-------RSEV 116 (159)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEECSSSCEEEEEEEGGGC---HHHHHHHTTCCTTCEEEEEEEEECS-------SSSC
T ss_pred EEEEEEEEEEEEEEeC-CEEEEEEecCCCCeEEEEEEccCC---CCcccccccCCCCCEEEEEEEEEee-------CCEE
Confidence 5689999999999887 557799999988 69999987631 1111223468999999999999643 2357
Q ss_pred EEEEeEEEEeec
Q 008808 184 EVQIKKLYCVSR 195 (553)
Q Consensus 184 Ei~v~~i~~ls~ 195 (553)
+|.+.++.++..
T Consensus 117 qI~~~~i~~v~d 128 (159)
T 3kf6_A 117 ELIAQSFEELRD 128 (159)
T ss_dssp EEEEEEEEEECS
T ss_pred EEEEEEEEECCC
Confidence 999999988863
No 75
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=95.81 E-value=0.14 Score=43.32 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=67.4
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee-------ccCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCc
Q 008808 91 EWTVVGALNGSLKDQEVLIRGRVHTT-------RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (553)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (553)
++.+|++|.+ +..|.|.|+|.++ |..|+ ++.=+.|.|+++.|.+++=.+.. . ..+..||
T Consensus 4 ~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a----~-----~~l~~Gd 71 (105)
T 3dm3_A 4 DTYNIGELSP---GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLT----D-----IDVGRGD 71 (105)
T ss_dssp CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGG----G-----SCCCTTC
T ss_pred cceEHHHCCC---CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccc----c-----cccCCCC
Confidence 4677888866 3789999999876 22342 46668999999999998764421 0 1699999
Q ss_pred eEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCC
Q 008808 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
+|.|.|.|.... .+.+||++.+...|.+|.
T Consensus 72 vv~i~g~vk~~~------~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 72 YVRVRGYIREGY------YGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEEEEEEEEECT------TSSEEEEEEEEEEEECCC
T ss_pred EEEEEEEEEEcc------CCCEEEEeCCceEEEecc
Confidence 999999887643 246999999999998885
No 76
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.55 E-value=0.17 Score=42.13 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=61.0
Q ss_pred EeccccCCCCCCEEEEEEEEeeec-------cCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHh-cCCCCceE
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTR-------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIV 163 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R-------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~-~l~~esiV 163 (553)
+|++|.+ |..|.|.|+|.++- ..|+ ++.=+.|.|+++.|.+.+-.+. +. .+..||+|
T Consensus 4 kI~dl~~---g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~----------~~~~i~~Gdvv 70 (97)
T 3e0e_A 4 KISELMP---NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNEL----------ADFEVKKGDIA 70 (97)
T ss_dssp CGGGCCT---TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGG----------GGCCCCTTCEE
T ss_pred EHHHCCC---CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCc----------cccccCCCCEE
Confidence 4666654 57899999998862 2342 5666889999999999876542 11 69999999
Q ss_pred EEEEEEecCCCccCCCceeEEEEEeEEEEeecCC
Q 008808 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 164 ~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
.|.|.|..-. +.+||++.+...|.+|+
T Consensus 71 ~i~g~v~~~~-------~~~el~~g~~~~i~k~~ 97 (97)
T 3e0e_A 71 EVSGYVKQGY-------SGLEISVDNIGIIEKSL 97 (97)
T ss_dssp EEEEEEEEC---------CEEEEEEEEEEEECCC
T ss_pred EEEEEEEEcC-------CeEEEEECCCcEEEECC
Confidence 9999886432 36999999888887763
No 77
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.08 E-value=0.049 Score=60.19 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=66.6
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccC--------CCCCccceee-cCCCC-ceecccChhhHhhhccc-----CCCcee
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGS--------SEGGSAVFRL-DYKGQ-SACLAQSPQLHKQMSIC-----GDFGRV 317 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~--------~egga~~F~v-~~~~~-~~~L~~SPql~lk~li~-----~g~~rV 317 (553)
++.+.+|+.|...||.||-|+.+++.. ..++...+.+ |-... .-.||+|-=--+=..+. +.-=|+
T Consensus 395 ~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrl 474 (589)
T 3l4g_B 395 KLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKL 474 (589)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 446778999999999999999997531 1122334443 22222 24677763222111221 113489
Q ss_pred EEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 318 feIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
||||+|||.+.. +.+|.+|+.+|..-+... .++.++...++.++
T Consensus 475 FEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll 519 (589)
T 3l4g_B 475 FEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIM 519 (589)
T ss_dssp EEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHH
T ss_pred EEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHH
Confidence 999999998764 457888999998754321 24666555555444
No 78
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.07 E-value=0.09 Score=44.94 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=60.5
Q ss_pred EeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEEEEEecC
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~~ 172 (553)
.+.+......+..|+|.|.|...-..- + |.+||+++.|+|-++.+. |. ..+.+++-|.|.|.|-+.
T Consensus 27 TV~~a~~~~Dd~~V~L~G~Iv~~~~~d-~---Y~F~D~TG~I~VeId~~~---------w~g~~v~p~~~Vri~GevDkd 93 (109)
T 1nnx_A 27 TVESAKSLRDDTWVTLRGNIVERISDD-L---YVFKDASGTINVDIDHKR---------WNGVTVTPKDTVEIQGEVDKD 93 (109)
T ss_dssp CHHHHTTSCSSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEECCGGG---------STTCCCCTTSCEEEEEEEEEE
T ss_pred eHHHHhhCcCCCeEEEEEEEEEEeCCC-e---EEEECCCccEEEEEChhh---------cCCcccCCCCEEEEEEEECCC
Confidence 344444567899999999998765433 3 789999999999988652 33 358999999999999753
Q ss_pred CCccCCCceeEEEEEeEEEEee
Q 008808 173 DVEIKGATQQVEVQIKKLYCVS 194 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls 194 (553)
- ...||.|..|++|.
T Consensus 94 ~-------~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 94 W-------NSVEIDVKQIRKVN 108 (109)
T ss_dssp T-------TEEEEEEEEEEEC-
T ss_pred C-------CceEEEEEEEEEcc
Confidence 2 13588888888764
No 79
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=94.85 E-value=0.18 Score=44.43 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=55.8
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
..|++-|+|.++...... .-+.|.|++| .|.|..-.+....+ .-...+..|++|.|.|.+..-. ++.
T Consensus 32 ~~V~iVG~V~~~~~~~~~-~~~~ldD~TG~~I~~~~W~~~~~~~----~~~~~~~~g~yVrV~G~l~~f~-------g~~ 99 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTN-IVYKIDDMTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSFQ-------NKK 99 (132)
T ss_dssp CEEEEEEEEEEEEECSSE-EEEEEECSSSSCEEEEEEC-------------CCCCTTCEEEEEEEEEEET-------TEE
T ss_pred EEEEEEEEEEEEEEcCCe-EEEEEECCCCCEEEEEEEccCCCcc----cccccccCCCEEEEEEEEEeEC-------CEE
Confidence 468999999999988744 4589999999 99999876532111 1135799999999999987532 256
Q ss_pred EEEEeEEEEee
Q 008808 184 EVQIKKLYCVS 194 (553)
Q Consensus 184 Ei~v~~i~~ls 194 (553)
.|.+..|..+.
T Consensus 100 qi~~~~ir~v~ 110 (132)
T 3kdf_D 100 SLVAFKIMPLE 110 (132)
T ss_dssp EEEEEEEEECS
T ss_pred EEEEEEEEEcC
Confidence 78888777664
No 80
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=94.68 E-value=0.09 Score=50.23 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=62.6
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCC-C-----CCccceee-cCCC-CceecccChhhHhhhcccC----CCc--eeE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYKG-QSACLAQSPQLHKQMSICG----DFG--RVF 318 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~v-~~~~-~~~~L~~SPql~lk~li~~----g~~--rVf 318 (553)
++.+.+|+.|...||.||-|-.+++... + .......+ |-.. ..-.||+|-=--+=..+.- +.. |+|
T Consensus 8 ~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~lF 87 (213)
T 3ig2_A 8 KLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKFF 87 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEEE
T ss_pred HHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeEE
Confidence 4667889999999999999999975321 0 11122333 2222 3346787743222222222 222 899
Q ss_pred EEeceecCCCCCC-----CCCcCcccceeEEeccc------------cCHHHHHHHHHHHHH
Q 008808 319 ETGPVFRAEDSYT-----HRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFV 363 (553)
Q Consensus 319 eIg~~FR~E~~~t-----~rHl~EFt~lE~e~a~~------------~~~~~~m~~~e~ll~ 363 (553)
|||+||+.++... ..+..|..+|-.-++.. .|+.|+...+|.++.
T Consensus 88 EiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~ 149 (213)
T 3ig2_A 88 EFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFK 149 (213)
T ss_dssp EEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHH
T ss_pred EeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHH
Confidence 9999999765211 12335777776644321 246676666666654
No 81
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=94.35 E-value=0.26 Score=43.52 Aligned_cols=79 Identities=10% Similarity=0.089 Sum_probs=56.0
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~E 184 (553)
..|++-|+|.+++..... .-+.|.|+++.|.|..=......+ ..-...+..|++|.|.|.+..-. ++..
T Consensus 37 ~~V~iVG~V~~~~~~~~~-~~~~ldD~TG~I~~~~W~~~~~~~---~~~~~~~~~g~yVrV~G~v~~f~-------g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATN-VAYSVEDGTGQIEVRQWLDSSSDD---SSKASEIRNNVYVRVLGTLKSFQ-------NRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEECSSE-EEEEEECSSCEEEEEEECC-----------CCSCCTTCEEEEEEEEEEET-------TEEE
T ss_pred EEEEEEEEEEEEEecCCe-EEEEEECCCCCEEEEEecccCCcc---cccccccCCCCEEEEEEEEEEeC-------CEEE
Confidence 468999999999887744 457999999999998765421110 01235799999999999986432 2567
Q ss_pred EEEeEEEEee
Q 008808 185 VQIKKLYCVS 194 (553)
Q Consensus 185 i~v~~i~~ls 194 (553)
|.+..|..+.
T Consensus 106 i~~~~ir~v~ 115 (136)
T 4gop_B 106 ISSGHMRPVI 115 (136)
T ss_dssp EEESEEEECS
T ss_pred EEEEEEEECC
Confidence 8888777654
No 82
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=93.78 E-value=0.72 Score=48.14 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=64.0
Q ss_pred CCCCEEEEEEEEeee--ccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCC
Q 008808 102 LKDQEVLIRGRVHTT--RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~--R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~ 179 (553)
.....++|+|.|.+. +..| .=+|+.|.|+++.|.|++-.. .+.+-+.+..|..||.|.|.|.|+. +
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~G-GHV~f~l~d~~~~i~c~ayep----tk~fr~~vr~L~~GD~V~v~G~v~~------g- 349 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEG-GHVFFEIDTKFGSVKCAAFEP----TKQFRNVIRLLRKGDVVEVYGSMKK------D- 349 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETT-TEEEEEEEETTEEEEEEECGG----GTTHHHHHTTCCTTCEEEEEEEEET------T-
T ss_pred ccCceEEEEEEEecCcEeccC-ceEEEEEEcCCCEEEEEEEcc----chHHHHHHhcCCCCCEEEEEEeecC------C-
Confidence 456899999999987 4555 558999999999999999763 2356677788999999999999764 1
Q ss_pred ceeEEEEEeEEEEeecC
Q 008808 180 TQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 180 t~~~Ei~v~~i~~ls~~ 196 (553)
.|.++++.++.-+
T Consensus 350 ----tLnvEk~~v~~l~ 362 (402)
T 3au7_A 350 ----TINLEKIQIVELA 362 (402)
T ss_dssp ----EEEEEEEEEEECC
T ss_pred ----EEEEEEEEEcccC
Confidence 7889999998764
No 83
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=93.67 E-value=0.25 Score=47.12 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=66.6
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCC-C-----CCccceee-cCCC-CceecccChhhHhhhcc----cCCCc--eeE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYKG-QSACLAQSPQLHKQMSI----CGDFG--RVF 318 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~v-~~~~-~~~~L~~SPql~lk~li----~~g~~--rVf 318 (553)
++.+.+|+.|...||.||-|-.+++... + .......+ |-.. .--.||+|-=--+=..+ .-+.. |+|
T Consensus 8 ~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~lF 87 (213)
T 3ica_A 8 KWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYLF 87 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEEE
T ss_pred HHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeEE
Confidence 5677899999999999999999975321 0 11122222 3333 33578877332221122 22333 899
Q ss_pred EEeceecCCCCC-----CCCCcCcccceeEEecc------------ccCHHHHHHHHHHHHH
Q 008808 319 ETGPVFRAEDSY-----THRHLCEFTGLDVEMEI------------KKHYSEVMDIVDRLFV 363 (553)
Q Consensus 319 eIg~~FR~E~~~-----t~rHl~EFt~lE~e~a~------------~~~~~~~m~~~e~ll~ 363 (553)
|||+||+.++.. ...+..|..+|-.-+.. ..|+.++...+|.++.
T Consensus 88 EiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~ 149 (213)
T 3ica_A 88 EWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLC 149 (213)
T ss_dssp EEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHH
T ss_pred EeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHH
Confidence 999999975421 01234577777665432 1368888877777765
No 84
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=92.98 E-value=0.23 Score=48.22 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=66.6
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeee---c------cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCC
Q 008808 90 REWTVVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNE 160 (553)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~e 160 (553)
..++.|.+|++.. ..++|+|||.++ | ..| ++.-++|.|..+.|++++-.. ...+|...|..|
T Consensus 6 ~~~~~I~~L~p~~--~~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~~~~~l~~G 76 (246)
T 1jmc_A 6 SKVVPIASLTPYQ--SKWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNE------QVDKFFPLIEVN 76 (246)
T ss_dssp -CBCCGGGCCTTC--CCCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHH------HHHHHGGGCCTT
T ss_pred cceEEHHHCCCCC--CceEEEEEEEEecccceeeCCCCCc-eEEEEEEECCCCeEEEEEChH------HHHHhhhhcccC
Confidence 4567788887543 246899999865 2 234 677788999999999998753 234567789999
Q ss_pred ceEEEEEEEecC-CCccCCCceeEEEEEeEEEEeecC
Q 008808 161 SIVDVIGVVSVP-DVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 161 siV~V~G~v~~~-~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
+++.|.+.-+++ .+..+.....+||....-..+.+|
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~ 113 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC 113 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEEC
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEc
Confidence 999999844433 222233334599988655555555
No 85
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=92.32 E-value=0.78 Score=39.44 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=59.0
Q ss_pred EEeccccCCCCC-CEEEEEEEEeee---c----cCCC-ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceE
Q 008808 93 TVVGALNGSLKD-QEVLIRGRVHTT---R----PVGN-KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (553)
Q Consensus 93 ~~i~~l~~~~~g-~~V~v~GrV~~~---R----~~G~-kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV 163 (553)
.+|++|.+ | ..|.+.|+|.++ | ..|+ +..=+.|.|.++.|.+.+=... +..+..|++|
T Consensus 3 ~~I~dL~~---~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~----------~~~~~~G~vv 69 (119)
T 1o7i_A 3 EKVGNLKP---NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKH----------AGSIKEGQVV 69 (119)
T ss_dssp CCGGGCCT---TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGG----------TTCCCTTCEE
T ss_pred EEHHHCcC---CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECCh----------hhcCCCCCEE
Confidence 45666654 4 358888988776 3 3453 6777889999999999887542 1348999999
Q ss_pred EEE-EEEecCCCccCCCceeEEEEEeEEEEeecC
Q 008808 164 DVI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 164 ~V~-G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
.|. |.+..- .+.++|.+.+...|.++
T Consensus 70 ~i~~g~v~~~-------~g~~qL~i~~~~~i~~~ 96 (119)
T 1o7i_A 70 KIENAWTTAF-------KGQVQLNAGSKTKIAEA 96 (119)
T ss_dssp EEEEEEEEEE-------TTEEEEEECTTCEEEEC
T ss_pred EEEeEEEEEe-------CCEEEEEECCCEEEEEc
Confidence 999 777542 23689998775555444
No 86
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=91.91 E-value=0.95 Score=38.37 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=62.0
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee--ccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE-EE
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT--RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI-GV 168 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~--R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~-G~ 168 (553)
+.+|.+|.+ .+..|.+.|+|.++ +..|+....+.|.|.+++|-+++=.... +..+..|++|.|. |.
T Consensus 5 ~~kI~dl~~--~~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~---------~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 5 LTKIVDIVE--NGQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE---------LPLLEQGESYLLRSVV 73 (109)
T ss_dssp BCCTTTCCS--TTCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC---------CCCCCTTCEEEEEEEE
T ss_pred ceEHHHCCC--CCCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc---------ccccCCCCEEEEEEEE
Confidence 456777754 37889999999987 3344456668999999999998875311 2468999999999 56
Q ss_pred EecCCCccCCCceeEEEEEeEEEEeecC
Q 008808 169 VSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 169 v~~~~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
+..- .+.++|.+.+...+.+.
T Consensus 74 v~~~-------~G~~~L~v~~~~~I~~~ 94 (109)
T 2kbn_A 74 VGEY-------NDRFQVQVNKNSSIEKL 94 (109)
T ss_dssp EEEE-------TTEEEEEECSSSEEEEC
T ss_pred EEEE-------CCEEEEEECCceEEEEC
Confidence 6432 23689998776655543
No 87
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=90.69 E-value=0.97 Score=51.46 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccC----CCCCccceee-cCCC-CceecccChhhHhhhccc-----C--CCcee
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGSAVFRL-DYKG-QSACLAQSPQLHKQMSIC-----G--DFGRV 317 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egga~~F~v-~~~~-~~~~L~~SPql~lk~li~-----~--g~~rV 317 (553)
..++.+.+|+.|...||.|+-|-.+++.. ...+...+.+ |-.. ..-.||+|-=--+=..+. + .--|+
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrl 570 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALL 570 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEE
Confidence 34557778999999999999988887532 1111233443 2222 223577653222222222 1 23499
Q ss_pred EEEeceecCCCCCCCCCcCcccceeEEeccc-----------cCHHHHHHHHHHHHHHH
Q 008808 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-----------KHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 318 feIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-----------~~~~~~m~~~e~ll~~i 365 (553)
||||+||| + .||++|..-+... .++.++...++.++..+
T Consensus 571 FEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 571 FEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 99999999 2 6888888755442 26889888888887654
No 88
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=90.34 E-value=1.5 Score=37.95 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=52.5
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEe
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~ 170 (553)
+..-+-|. ...|+.|++-|||.+++..| + . +.|.. +++.|+|.++...+ ..+ +.+|.|.|+|.
T Consensus 11 RVn~s~L~-~fvgk~VrivGkV~~~~~~g-~-~-~~l~s~Dg~~Vtv~l~~p~~----------~~l--~~~vEViG~V~ 74 (121)
T 3kdf_A 11 RINAGMLA-QFIDKPVCFVGRLEKIHPTG-K-M-FILSDGEGKNGTIELMEPLD----------EEI--SGIVEVVGRVT 74 (121)
T ss_dssp EECGGGGG-GGTTCEEEEEEEEEEECTTS-S-E-EEEECTTSCEEEEECSSCCS----------SCC--CSEEEEEEEEC
T ss_pred eECHHHHH-hhCCCeEEEEEEEEEEcCCC-C-E-EEEEeCCCCEEEEEeCCCCC----------ccc--CcEEEEEEEEC
Confidence 33344443 68899999999999999888 4 3 34554 56789998876311 123 45999999997
Q ss_pred cCCCccCCCceeEEEEEeEEEEeec
Q 008808 171 VPDVEIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 171 ~~~~~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
.. ..|.+..+..++.
T Consensus 75 ~~----------~tI~~~~~~~fg~ 89 (121)
T 3kdf_A 75 AK----------ATILCTSYVQFKE 89 (121)
T ss_dssp TT----------SCEEEEEEEECCC
T ss_pred CC----------CeEEEEEEEecCC
Confidence 32 2566666555543
No 89
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=90.21 E-value=1.4 Score=42.01 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=56.6
Q ss_pred CEEEEEEEEeeeccCCC-------ceEEEEEEeCCe---EEEEEeecCCCCcchHHHHH---HhcCCCCceEEEEEEEec
Q 008808 105 QEVLIRGRVHTTRPVGN-------KLAFVVVRERVS---TVQCLATVKPDSVSKEMVRF---VRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~-------kl~Fl~Lrd~~~---~iQvv~~~~~~~~~~~~~~~---~~~l~~esiV~V~G~v~~ 171 (553)
+.|.|.|+|...+-+-. ...|+.|-|.++ +|.|.++... .... ......|.+|.|+|++..
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~------~~~~gl~l~~~~~G~iV~VkG~i~~ 159 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ------FKEVGLTLDKKNYGKIVELEGEIYN 159 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH------HHTTTCCTTSCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH------hhccCccccccCCCeEEEEEEEEEe
Confidence 67999999999864431 358889999886 5888776431 1010 012457999999999975
Q ss_pred CCCccCCCce-eEEEEEeEEEEeecC
Q 008808 172 PDVEIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 172 ~~~~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
-........+ .-||.++++.+++..
T Consensus 160 ~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 160 WYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred eccccccccccceEEEEEEEEEeccC
Confidence 4211111111 359999999999853
No 90
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=89.90 E-value=1.4 Score=43.49 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=55.6
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
..|++.|+|.++...+ .-.-+.|.|+++ .|.|.+-....... .-...+..|++|.|.|.|..-. +..
T Consensus 72 ~~V~ivG~V~~i~~~~-~~~~~~L~D~TG~~I~~k~W~~~~~~~----~~~~~~~~G~yVrV~G~v~~f~-------g~~ 139 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAP-TNIVYKIDDMTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSFQ-------NKK 139 (270)
T ss_dssp SEEEEEEEEEEEEECS-SEEEEEEECSSSSCEEEEEECC-----------CCCCCTTCEEEEEEEEEEET-------TEE
T ss_pred EEEEEEEEEEEEEecc-ceEEEEEECCCCCEEEEEEEcCcCccc----chhhcCCCCCEEEEEEEEEecC-------Cee
Confidence 3589999999997776 445578999999 89999875421110 0134699999999999987432 246
Q ss_pred EEEEeEEEEeec
Q 008808 184 EVQIKKLYCVSR 195 (553)
Q Consensus 184 Ei~v~~i~~ls~ 195 (553)
.|.+..|..+..
T Consensus 140 qi~i~~ir~v~d 151 (270)
T 2pi2_A 140 SLVAFKIMPLED 151 (270)
T ss_dssp EEEEEEEEECSC
T ss_pred EEEEEEEEecCC
Confidence 777877776543
No 91
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=89.43 E-value=0.52 Score=49.95 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=64.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee---c------cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCce
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esi 162 (553)
++.|.+|++.. ..++|+|||.++ | ..| ++.-++|.|+.+.|++++-.. ...+|...|..|++
T Consensus 3 ~~~I~~L~p~~--~~w~I~~rV~~k~~ir~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~f~~~l~eG~v 73 (444)
T 4gop_C 3 IYPIEGLSPYQ--NRWTIKARVTSKSDIRHWSNQRGEG-KLFSVNLLDDSGEIKATGFND------AVDRFYPLLQENHV 73 (444)
T ss_dssp CCCSTTCCTTC--CSCEEEEECCEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEETH------HHHHHTTTCCTTCE
T ss_pred ceeHHHCCCCC--cceEEEEEEEEccCcceecCCCCCc-eEEEEEEEcCCCEEEEEEeHH------HHHHHHHheecCCE
Confidence 45667776543 346889999853 3 235 788899999999999998753 33456778999999
Q ss_pred EEEEEE-EecCCCccCCCceeEEEEEeEEEEeecC
Q 008808 163 VDVIGV-VSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 163 V~V~G~-v~~~~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
+.|.+. |......-+.....+||....-..+.+|
T Consensus 74 y~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 74 YLISKARVNIAKKQFSNLQNEYEITFENSTEIEEC 108 (444)
T ss_dssp EEEESCEEEECCGGGCSCCCSEEEEECTTCEEEEC
T ss_pred EEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEc
Confidence 999985 4333322223334599998654445544
No 92
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=88.83 E-value=0.59 Score=55.42 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=47.4
Q ss_pred CCCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 102 LKDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
..|+.|+|+|-|.++| .+|++++|++|.|.++.+.+++..+. ..++...|..+.+|.|+|.|....
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~------~~~~~~~l~~~~~~~v~G~v~~~~---- 1109 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRA------YEGVSPKLKEDIPLLVLAEVEKGE---- 1109 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEEEEEC-------------------CTTCEEEEEEEEC-------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHH------HHHHHHHhccCCEEEEEEEEEECC----
Confidence 4689999999999886 34556999999999999999998763 234456689999999999997432
Q ss_pred CCceeEEEEEeEEEEeec
Q 008808 178 GATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~ls~ 195 (553)
.+.|.+.++.-++.
T Consensus 1110 ----~~~l~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1110 ----ELRVLAQAVWTLEE 1123 (1220)
T ss_dssp ------CEEEEEEEEHHH
T ss_pred ----CcEEEEeeeecHHH
Confidence 25677777765543
No 93
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=88.67 E-value=3.2 Score=34.86 Aligned_cols=88 Identities=10% Similarity=0.134 Sum_probs=60.5
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee-----ccCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEE
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT-----RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-----R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (553)
+.+|++|.+. ...|.+.|+|.++ +..|+ +++=+.|.|.++.|.+.+=.. .+..|++|.
T Consensus 3 ~~kI~dl~pg--~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~-------------~l~~Gdvv~ 67 (106)
T 2k75_A 3 LVKIRDVSLS--TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGK-------------QLQDSDVVR 67 (106)
T ss_dssp BCCSTTCCTT--CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESS-------------CCCTTEEEE
T ss_pred cEEHHHcCCC--CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcC-------------ccCCCCEEE
Confidence 4566777542 2457778877664 23563 266788889999998887654 189999999
Q ss_pred EE-EEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CC
Q 008808 165 VI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PI 201 (553)
Q Consensus 165 V~-G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~ 201 (553)
|. |.+..- .+.++|.+.+...|.+.... |+
T Consensus 68 i~ng~v~~~-------~g~~~L~v~~~~~I~~~~~~~~~ 99 (106)
T 2k75_A 68 IDNARVAQF-------NGYLSLSVGDSSRIESVNVNIPL 99 (106)
T ss_dssp EEEEEEEEE-------TTEEEEEECTTSEEEECCSCCCC
T ss_pred EEeeEEeEE-------CCEEEEEECCcEEEEECCCCCcc
Confidence 99 766432 24689999777666666544 54
No 94
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=88.02 E-value=5.6 Score=33.16 Aligned_cols=53 Identities=11% Similarity=0.241 Sum_probs=33.8
Q ss_pred EEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeec
Q 008808 135 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 135 iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
++|++-.+.. + ...+.|+.||-|.|+|.+... ....|.+. .||++.+|..|+.
T Consensus 50 ~~vv~~g~~A---e---~~~~~l~KG~~V~V~G~L~~~-~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHEN---Q---AITHSITVGSRITVQGFISCH-KAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTT---H---HHHTTCCTTCEEEEEEEEEC---------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHHH---H---HHHhhCCCCCEEEEEEEEEec-cCCCCCEE-EEEEEEEEEECcC
Confidence 8888876521 1 234669999999999999865 22223222 8999999998864
No 95
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=86.26 E-value=2.2 Score=36.60 Aligned_cols=57 Identities=11% Similarity=0.217 Sum_probs=41.0
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CC
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PI 201 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~ 201 (553)
.|+|++-.+ ..+.++.++.||-|.|+|.+....+ .+ .+++|+++.|+.|+...-. |+
T Consensus 48 ~i~vv~~Gk-------~AE~~~~l~kGs~V~VeGrL~trs~--~G--~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 48 TISAVALGD-------LALLLADTPLGTEMQVQGFLAPARK--DS--VKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEEETH-------HHHHHTTCCTTCEEEEEEEEEESST--TC--SSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEEhH-------HHHhhhccCCCCEEEEEEEEEECCC--CC--CEEEEEEEEEEEcCCCCCCCCc
Confidence 488888754 2333477999999999999986532 23 3599999999999876444 54
No 96
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=85.79 E-value=5.9 Score=34.69 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=38.0
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeec
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSR 195 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~ 195 (553)
..+.|++-.+ ......+.|+.||.|.|+|.+....- ...|.+.. +||.+.+|..|..
T Consensus 49 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~ 107 (134)
T 2vw9_A 49 CFIDARLFGR------TAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDK 107 (134)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCC
T ss_pred EEEEEEEEcH------HHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccC
Confidence 3577777643 11123356999999999999875421 12243333 8999999999865
No 97
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=85.51 E-value=8 Score=32.74 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=36.9
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
..++|++-.+ ......+.|..||.|.|+|.+....- ...|.+. .+||.+.+|.+|.+.
T Consensus 50 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 50 DYVNCTLWRK------TAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEEEECH------HHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 4578887653 11123456999999999999875421 1234333 399999999998753
No 98
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=85.32 E-value=7.4 Score=35.12 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=37.8
Q ss_pred eEEEEEeecCCCCcchHHHH-HHhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~-~~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
..+.|++-.+ ..+ ....|+.|+.|.|+|.+....- ...|.+. .+||.+.+|.+|...
T Consensus 56 ~~i~vv~wg~-------~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 56 EWHRIAFFNR-------LAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEEEETH-------HHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEEEhH-------HHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 4577777643 223 3356999999999999875421 1234443 399999999999753
No 99
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=83.17 E-value=2.4 Score=36.29 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=42.6
Q ss_pred eccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
-+.| ....|+.|+|-|||.+.+. + . +.|.. +++.|+|.++... .+..+.+|.|.|+|...
T Consensus 10 ~~~L-~~~~g~~VrivGkV~~~~g-~---~-~~l~s~d~~~Vtv~l~~~~------------~~~~~~~vEViG~V~~~ 70 (114)
T 4gop_A 10 SSML-GQYVGQTVRIVGKVHKVTG-N---T-LLMQTSDLGNVEIAMTPDS------------DVSSSTFVEVTGKVSDA 70 (114)
T ss_dssp TTTG-GGGTTSEEEEEEEEEEEET-T---E-EEEECTTSCEEEEECCSSC------------CGGGCSEEEEEEEECTT
T ss_pred HHHH-HhhCCCeEEEEEEEeeeCC-C---E-EEEEeCCCCEEEEEeCCCC------------CcccCcEEEEEEEEcCC
Confidence 3334 3588999999999999996 3 2 45664 4567887776542 23357899999999743
No 100
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=82.08 E-value=8.6 Score=34.16 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=40.5
Q ss_pred CCCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
....|+.|+|-|||.++-..| + . +.|.. ++..|+|.++.... -..+-+|.|.|+|..
T Consensus 39 ~~fvGk~VriVGkV~~~~~~G-~-~-~~l~s~Dg~~VtV~l~~pL~------------~~~~~~VEViG~V~~ 96 (142)
T 2pi2_E 39 AQFIDKPVCFVGRLEKIHPTG-K-M-FILSDGEGKNGTIELMEPLD------------EEISGIVEVVGRVTA 96 (142)
T ss_dssp GGSTTCEEEEEEEEEEECTTS-S-E-EEEECTTSCEEEEECSSCCS------------SCCCSEEEEEEEECT
T ss_pred HhhCCCEEEEEEEEeEEcCCC-C-E-EEEEeCCCcEEEEEeCCCCC------------ccCCCEEEEEEEECC
Confidence 468899999999999995555 3 2 35554 45788888864211 123679999999954
No 101
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=79.12 E-value=14 Score=33.14 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=35.9
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEeec
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSR 195 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~ 195 (553)
..+.|++-.+ ......+.|+.|+.|.|+|.+....- ...|.+. .+||.+.+|.+|..
T Consensus 63 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~ 121 (153)
T 1z9f_A 63 DFFRIVTFGR------LAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDR 121 (153)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC-
T ss_pred EEEEEEEECH------HHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccC
Confidence 3577777643 11223456999999999999875432 1223333 38999999999975
No 102
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=78.47 E-value=2.1 Score=43.78 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=38.4
Q ss_pred CCcCCCCCCcccCCCCcceeEEEEEeCC--EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcC-CCCcceeee
Q 008808 447 PLAVRPFYTMPCHDNSLYSNSFDVFIRG--EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYG-APPHGGFGV 523 (553)
Q Consensus 447 P~~~~pfy~~~~~~~~~~~~~fdl~~~G--~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G-~pP~~G~Gi 523 (553)
|..++.+ ... + ++. |+++..| ..||+|+. |+.|.+.| | --|..||+|
T Consensus 276 ~~lvrgl-dYY---t-G~v--Fe~~~~~~~~~i~~GGR----YD~L~~~f-------------------g~~~pavGfai 325 (344)
T 1z7m_A 276 LGMVPKM-DYY---T-DLM--FKAYSSAANQPILSGGR----YDQLLSNF-------------------QEEAFAIGFCC 325 (344)
T ss_dssp TTCCCSS-TTC---C-SEE--EEEEETTEEEEEEEEEE----CHHHHHTS-------------------SSCCCCEEEEE
T ss_pred CCCCCCC-ccC---C-CeE--EEEEECCCCCeEeeCcc----HHHHHHHh-------------------CCCCCeEEEEE
Confidence 6666665 211 1 333 9999985 58999976 44443332 3 357899999
Q ss_pred cHHHHHHHHc
Q 008808 524 GLERVVMLFC 533 (553)
Q Consensus 524 GidRLvm~l~ 533 (553)
|+|||++++.
T Consensus 326 glerl~~~l~ 335 (344)
T 1z7m_A 326 HMDTILKALE 335 (344)
T ss_dssp EHHHHHHHHH
T ss_pred EHHHHHHHHH
Confidence 9999998875
No 103
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=75.80 E-value=27 Score=29.85 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=36.3
Q ss_pred eEEEEEeec-CCCCcchHHHH-HHhcCCCCceEEEEEEEecCCC-cc--CCCcee-EEEEEe----EEEEeec
Q 008808 133 STVQCLATV-KPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDV-EI--KGATQQ-VEVQIK----KLYCVSR 195 (553)
Q Consensus 133 ~~iQvv~~~-~~~~~~~~~~~-~~~~l~~esiV~V~G~v~~~~~-~~--~~~t~~-~Ei~v~----~i~~ls~ 195 (553)
.-+.|++-. + ..+ ..+.|+.||.|.|+|.+....- .. .|.+.. +||.+. +|..|+.
T Consensus 54 ~~~~v~~wg~~-------~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 54 DWHRIVVYDQN-------IVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEEEECCHH-------HHHHHHHHCCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred EEEEEEEEEch-------HHHHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 357777764 2 223 3456999999999999874422 12 344433 999997 8988864
No 104
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=73.85 E-value=20 Score=31.66 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=51.0
Q ss_pred EEEEEEEEee---ecc--CCCceEEEEEE--------------eCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE
Q 008808 106 EVLIRGRVHT---TRP--VGNKLAFVVVR--------------ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr--------------d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~ 166 (553)
.|.|.|||.+ +|. .|..++-+.|- +....+.|++-.+ ......+.|+.||.|.|+
T Consensus 7 ~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~------~Ae~~~~~l~KG~~V~V~ 80 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK------LAEVASEYLRKGSQVYIE 80 (145)
T ss_dssp EEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETH------HHHHHHHHCCTTCEEEEE
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehH------HHHHHHHhcCCCCEEEEE
Confidence 4677777766 343 34444444442 1234688887753 111234569999999999
Q ss_pred EEEecCCC-ccCCCcee-EEE---EEeEEEEeec
Q 008808 167 GVVSVPDV-EIKGATQQ-VEV---QIKKLYCVSR 195 (553)
Q Consensus 167 G~v~~~~~-~~~~~t~~-~Ei---~v~~i~~ls~ 195 (553)
|.+....- ...+.+.. +|| .+.+|.+|..
T Consensus 81 G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~ 114 (145)
T 1qvc_A 81 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 114 (145)
T ss_dssp EEEEEEEECSSSSCEEEEEEEECTTCEEEECCCC
T ss_pred EEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccC
Confidence 99875431 12343333 788 7888888864
No 105
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=72.90 E-value=37 Score=29.31 Aligned_cols=43 Identities=7% Similarity=0.129 Sum_probs=29.7
Q ss_pred HhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEeecC
Q 008808 154 VRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 154 ~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
.+.|..||.|.|+|.+....- ...|.+. .+||.+.+|.+|++.
T Consensus 83 ~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 83 YQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp HHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred HhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 456999999999999975432 1223333 399999999998753
No 106
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=71.86 E-value=16 Score=35.57 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=54.7
Q ss_pred CEEEEEEEEee---ecc--CCCceEEEEEE-e---------CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 105 QEVLIRGRVHT---TRP--VGNKLAFVVVR-E---------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 105 ~~V~v~GrV~~---~R~--~G~kl~Fl~Lr-d---------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
..|.|.|||.+ +|. .|..++-+.|- . ....++|++-.+ ....+..|+.||.|.|+|.+
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~-------~Ae~~~~l~KG~~V~V~G~l 201 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRE-------LAEWASELRKGDGLLVIGRL 201 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHH-------HHHHHTTCCTTCEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEECh-------HHHHhhhcCCCCEEEEEEEE
Confidence 46889999987 453 46555555552 2 123578877743 12333389999999999998
Q ss_pred ecCCC-ccCCCcee-EEEEEeEEEEeec
Q 008808 170 SVPDV-EIKGATQQ-VEVQIKKLYCVSR 195 (553)
Q Consensus 170 ~~~~~-~~~~~t~~-~Ei~v~~i~~ls~ 195 (553)
....- ...|.+.. +||.+.+|..|..
T Consensus 202 ~~~~~~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 202 VNDSWTSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEECCCC
T ss_pred EeeEEECCCCCEEEEEEEEEEEEEECcc
Confidence 75431 12243333 8999999999864
No 107
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=71.04 E-value=24 Score=35.20 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=51.5
Q ss_pred EEEEEEEEee---ecc--CCCceEEEEEE------e-------CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEE
Q 008808 106 EVLIRGRVHT---TRP--VGNKLAFVVVR------E-------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (553)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr------d-------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G 167 (553)
.|.|.|||.+ +|. .|..++-+.|- + ....+.|++-.+ ..+.+..|+.|+.|.|+|
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~-------~Ae~~~~l~KG~~V~V~G 203 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRD-------LAENMKELRKGDPVMIMG 203 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETH-------HHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCH-------HHHHHHhcCCCCEEEEEE
Confidence 5789999987 453 35555544442 1 122577777643 233333399999999999
Q ss_pred EEecCCC-ccCCCce-eEEEEEeEEEEeec
Q 008808 168 VVSVPDV-EIKGATQ-QVEVQIKKLYCVSR 195 (553)
Q Consensus 168 ~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~ 195 (553)
.+....- ...|.+. .+||.+.+|.+|..
T Consensus 204 rL~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 204 RLVNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEEEECC------CEEEEEEEEEEEECCC
T ss_pred EEeeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 9875431 1223333 49999999999864
No 108
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=68.45 E-value=32 Score=33.38 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=35.2
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCcee-EEEEEeEEEEeecC
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
.+.|++-.+ ......+.|+.|+.|.|+|.+....-...|.+.. +||.+.+|.+|...
T Consensus 53 ~~~v~~~g~------~Ae~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 53 YHRVRLLGR------QAEMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEEETH------HHHHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEEch------HHHHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 467777643 1122345799999999999997543211233333 89999999999754
No 109
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=67.93 E-value=44 Score=39.02 Aligned_cols=92 Identities=13% Similarity=0.213 Sum_probs=64.5
Q ss_pred EEeccccCCCCCCEEEEEEEEeee--c--cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEE
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTT--R--PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 168 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~--R--~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~ 168 (553)
..+.++.+ ....|.|.|.|..+ | ..|+.+.-+.+.|.+..|.|....+. ++..+....|+.|+.|.|.|.
T Consensus 8 ~~~~~~~~--~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~----~~~~~~~~~~~~g~~~~~~g~ 81 (1041)
T 3f2b_A 8 RRLETIVE--EERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRD----KEDAELMSGVKKGMWVKVRGS 81 (1041)
T ss_dssp BCGGGCCS--CEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSS----HHHHHHHHTCCTTCEEEEEEE
T ss_pred ccHHHhhc--ccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecc----cchHHHHhcCCCCCEEEEEEE
Confidence 34444432 34679999999875 4 24767777889999999988766542 233345678999999999999
Q ss_pred EecCCCccCCCceeEEEEEeEEEEeec
Q 008808 169 VSVPDVEIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 169 v~~~~~~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
+....- ++++.+.+..|..+.+
T Consensus 82 ~~~d~~-----~~~~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 82 VQNDTF-----VRDLVIIANDLNEIAA 103 (1041)
T ss_dssp EEEETT-----TTEEEEEEEEEEEECC
T ss_pred EEeccC-----CcceEEEeeeeEEecc
Confidence 976532 2367778877776654
No 110
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=66.74 E-value=60 Score=30.32 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=33.6
Q ss_pred CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc-cCCCce-eEEEEEeEEEE
Q 008808 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGATQ-QVEVQIKKLYC 192 (553)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~-~~~~t~-~~Ei~v~~i~~ 192 (553)
...|.|++-.+ ......+.|++||.|.|+|.+....-. ..+.+. .+||.+.+|..
T Consensus 52 T~wi~Vvawgk------lAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 52 SLFLTCSVWRQ------AAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp CEEEEEEEETH------HHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred cEEEEEEEEhH------HHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 34577777653 112234569999999999999754321 223332 48999998864
No 111
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=63.74 E-value=52 Score=29.13 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=57.5
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeee----------ccCCC--------ceEEEEEEeCCeEEEEEeecCCCCcchHHH
Q 008808 90 REWTVVGALNGSLKDQEVLIRGRVHTT----------RPVGN--------KLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (553)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~----------R~~G~--------kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~ 151 (553)
..+.+|.+|.+... -|.|.|+|..+ |..|+ +++=+.|-|++++|-..+-..
T Consensus 14 p~~~kI~dL~pg~~--~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e--------- 82 (145)
T 1wjj_A 14 PVFVKVEQLKPGTT--GHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARND--------- 82 (145)
T ss_dssp CSSCCSTTCCTTCC--CEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTT---------
T ss_pred ccceEHHHcCCCCC--ceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecC---------
Confidence 34778888876443 36777777553 22231 677788999999988776543
Q ss_pred HHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeec
Q 008808 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 152 ~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
.+..|..||+|.|++-...-- .+.++|.+.+.--|.+
T Consensus 83 -~~~~l~~Gd~v~i~na~v~~~------~G~~~L~vgk~g~Ie~ 119 (145)
T 1wjj_A 83 -QVDLMKPGATVILRNSRIDMF------KGTMRLGVDKWGRIEA 119 (145)
T ss_dssp -HHHHTCTTCEEEEEEEEEEEE------TTEEEEEECTTCCBCC
T ss_pred -CcCcCCCCCEEEEeccEEEeE------CCEEEEEECCCEEEEE
Confidence 134588999999998544321 2368998865444433
No 112
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=63.40 E-value=55 Score=27.42 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=48.2
Q ss_pred CCEEEEEEEEeee---c--cCCCceEEEEEE-----eCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec-C
Q 008808 104 DQEVLIRGRVHTT---R--PVGNKLAFVVVR-----ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-P 172 (553)
Q Consensus 104 g~~V~v~GrV~~~---R--~~G~kl~Fl~Lr-----d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~-~ 172 (553)
...|.|.|||.+= | ..|..++=+.|- +....|-|++..+.... ..+..|+-|.|+|.+.. .
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~--------~~~~kG~~v~v~G~lrsy~ 82 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEG--------MNLEVGTRVKIEGQLRSYN 82 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTT--------CCCCTTCEEEEEEEEEEEE
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhH--------HhhcCCCEEEEEEEEEecc
Confidence 3458888888652 3 245333333332 34468888888653211 13568999999999853 2
Q ss_pred -CCccCCCce-eEEEEEeEEEEee
Q 008808 173 -DVEIKGATQ-QVEVQIKKLYCVS 194 (553)
Q Consensus 173 -~~~~~~~t~-~~Ei~v~~i~~ls 194 (553)
-....|.+. -+||.+.+|..|+
T Consensus 83 ~~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 83 RKSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp CC--------EEEEEEEEEEEEEC
T ss_pred eEECCCCCEEEEEEEEEEEEEEcc
Confidence 111223332 3899999999875
No 113
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=63.14 E-value=22 Score=29.62 Aligned_cols=48 Identities=6% Similarity=0.026 Sum_probs=35.4
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEe
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
.++|++-.+ ..+ +..|+.|+-|.|+|.+..... ++ .++.||+++|+.+
T Consensus 54 ~i~vv~~gk-------~Ae-~~~l~KG~~v~veGrL~~rs~--~~--~~lvlhi~~i~~i 101 (103)
T 3k8a_A 54 EIPARILGR-------QAE-EWQYRQGDCATVEGFLAQKSR--RS--LMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEEHH-------HHH-HSTTCTTCEEEEEEEEEESSS--SC--CCEEEEEEEEEEC
T ss_pred EEEEEEEhH-------Hhh-hhccCCCCEEEEEEEEEECcc--CC--ccEEEEEEEEEEc
Confidence 377777643 234 566999999999999986543 22 2799999999876
No 114
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=62.03 E-value=77 Score=28.56 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=32.8
Q ss_pred CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEE
Q 008808 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKL 190 (553)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i 190 (553)
...+.|++-.+ ......+.|++||.|.|+|.+....- ...+.+. .+||.+.+|
T Consensus 52 t~~~~v~~wg~------~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~ev~a~~v 106 (168)
T 3afp_A 52 ALFLRCNIWRE------AAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEI 106 (168)
T ss_dssp CEEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEEEEEEEEEEE
T ss_pred cEEEEEEEehH------HHHHHHHhCCCCCEEEEEEEEEeeeEECCCCcEEEEEEEEEEEe
Confidence 34677777643 11223467999999999999875431 1223333 388877754
No 115
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=60.06 E-value=57 Score=32.42 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=36.6
Q ss_pred EEEEEeecCCCCcchHHHHHHhc-CCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRS-LSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~-l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
.++|++-.+ ......+. |+.|+.|.|+|.+....- ...|.+.- +||.+.+|.+|...
T Consensus 53 ~i~vv~~g~------~Ae~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 53 YHRVSILGK------PAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEEESH------HHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEEEEcH------HHHHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 577777643 12223466 999999999999875321 12233333 89999999999653
No 116
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=58.43 E-value=74 Score=29.53 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=36.4
Q ss_pred eEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEe----EEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIK----KLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~----~i~~ls~~ 196 (553)
.-+.|++-.+ ...+.+ +.|++|+.|.|+|.+....- ...+.+.. +||.+. +|.+|..-
T Consensus 74 dwi~Vvawgk------~lAe~~~~yL~KGs~V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 74 EWHNIVIFNE------NLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEEEECCH------HHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred EEEEEEEECH------HHHHHHHhhcCCCCEEEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 3467776542 123334 56999999999999875422 12344433 899998 68888653
No 117
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=57.91 E-value=1e+02 Score=27.81 Aligned_cols=86 Identities=12% Similarity=0.200 Sum_probs=48.2
Q ss_pred CEEEEEEEEee---ecc--CCCceEEEEEEe--------------CCeEEEEEeecCCCCcchHHHHH-HhcCCCCceEE
Q 008808 105 QEVLIRGRVHT---TRP--VGNKLAFVVVRE--------------RVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVD 164 (553)
Q Consensus 105 ~~V~v~GrV~~---~R~--~G~kl~Fl~Lrd--------------~~~~iQvv~~~~~~~~~~~~~~~-~~~l~~esiV~ 164 (553)
..|.|.|||-+ +|. .|+.++-+.|-- .+.-+.|++-.+ ...+. .+.|++|+.|.
T Consensus 24 NkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~------~lAe~~~~~l~KG~~V~ 97 (169)
T 3lgj_A 24 NKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNP------HFAKIALQYLHKGSKVY 97 (169)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCH------HHHHHHHHHCCTTCEEE
T ss_pred eEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCH------HHHHHHHHhCCCCCEEE
Confidence 35777777765 343 344444444321 223567776532 12233 45699999999
Q ss_pred EEEEEecCCC-ccCCCce-eEEEEE----eEEEEeecC
Q 008808 165 VIGVVSVPDV-EIKGATQ-QVEVQI----KKLYCVSRA 196 (553)
Q Consensus 165 V~G~v~~~~~-~~~~~t~-~~Ei~v----~~i~~ls~~ 196 (553)
|+|.+....- ...|.+. .+||.+ .+|.+|+..
T Consensus 98 VeGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 98 IEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 9999875432 1223333 388887 589988754
No 118
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=57.05 E-value=90 Score=27.30 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=57.6
Q ss_pred CCCCCEEEEEEEEe--ee-cc-CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCcc
Q 008808 101 SLKDQEVLIRGRVH--TT-RP-VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (553)
Q Consensus 101 ~~~g~~V~v~GrV~--~~-R~-~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~ 176 (553)
...|+.|+|.|.|. ++ |. .|..+.| .|.|++.+|.|....-. . ..++.|.-|-++|.+...+
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gil---P-------DlFrEGqgVVa~G~l~~~g--- 90 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAEGSVDVSYEGIL---P-------DLFREGQGVVVQGELEKGN--- 90 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEE-EEECSSCEEEEEEESCC---C-------TTCCTTSEEEEEEEECSSS---
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCCcEEEEEECCCC---C-------ccccCCCeEEEEEEECCCC---
Confidence 46789999999999 34 54 2435776 56888899999887542 1 2577899999999986432
Q ss_pred CCCceeEEEEEeEEEEeecCCCC--CCcccc
Q 008808 177 KGATQQVEVQIKKLYCVSRAAKT--PITIED 205 (553)
Q Consensus 177 ~~~t~~~Ei~v~~i~~ls~~~~~--P~~~~d 205 (553)
.+.+++ ||.+|... |-.+.+
T Consensus 91 -------~F~A~e--VLAKhdekYmp~eva~ 112 (136)
T 1sr3_A 91 -------HILAKE--VLAKHDENYTPPEVEK 112 (136)
T ss_dssp -------EEEESS--CBCCSCCCCCCHHHHT
T ss_pred -------eEEEEE--EEecCCCCCCCHHHHH
Confidence 456665 68999765 644433
No 119
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=53.33 E-value=1e+02 Score=27.29 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=51.1
Q ss_pred CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCce
Q 008808 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQ 181 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~ 181 (553)
+.=..||+.|.|-.. ..| . +.|+|+++++=+..-.+ +.+. ...++.|..|-|.|.+... +.
T Consensus 56 l~~s~VWmQG~VV~~-~~g-~---~~LdDgTG~~~v~g~~~---vp~g----~p~l~~G~YVMV~G~v~~~-------s~ 116 (150)
T 3mxn_B 56 LDLAAVWMQGRVVMA-DRG-E---ARLRDPSGDFSVRGLER---VPRG----RPCLVPGKYVMVMGVVQAC-------SP 116 (150)
T ss_dssp EECSEEEEEEEEEEE-ETT-E---EEEEETTEEEEEECGGG---SCCC----SCCCSTTCEEEEEEEEEEC-------SS
T ss_pred ceeEEEEEEeEEEEe-CCC-e---EEEECCCceEEEeeccc---cCCC----CcccCCCCEEEEEEEEEec-------CC
Confidence 334679999999997 555 3 68999999765422221 1110 1248899999999998743 22
Q ss_pred eEEEEEeEEEEeec
Q 008808 182 QVEVQIKKLYCVSR 195 (553)
Q Consensus 182 ~~Ei~v~~i~~ls~ 195 (553)
+-.|.+.++.=||.
T Consensus 117 eP~i~AvKm~DLS~ 130 (150)
T 3mxn_B 117 EPCLQAVKMTDLSD 130 (150)
T ss_dssp SCEEEEEEEEECCS
T ss_pred CceEEEEEeeeCCC
Confidence 46788888877776
No 120
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=50.41 E-value=20 Score=40.75 Aligned_cols=109 Identities=11% Similarity=0.074 Sum_probs=62.1
Q ss_pred HHHHHHHhHhCCcEEEecceeeccCC----CCCccceee-cCCC-CceecccChhhHhhhcc----cCCC--ceeEEEec
Q 008808 255 GNIFRQFLLSENFVEIHTPKLIAGSS----EGGSAVFRL-DYKG-QSACLAQSPQLHKQMSI----CGDF--GRVFETGP 322 (553)
Q Consensus 255 ~~~iR~fl~~~gF~EV~TP~l~~~~~----egga~~F~v-~~~~-~~~~L~~SPql~lk~li----~~g~--~rVfeIg~ 322 (553)
.+.+|+.|...||.||-|-.+++... .+......+ |-.. .--.||+|-=--|=..+ .-+. -|+||||+
T Consensus 495 ~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~ 574 (795)
T 3pco_B 495 LKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGL 574 (795)
T ss_dssp HHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEE
T ss_pred HHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeee
Confidence 44589999999999999998875310 011122222 2222 33468877322221122 2233 48999999
Q ss_pred eecCCCCCCCCCcCcccceeEEecc------------ccCHHHHHHHHHHHHHH
Q 008808 323 VFRAEDSYTHRHLCEFTGLDVEMEI------------KKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 323 ~FR~E~~~t~rHl~EFt~lE~e~a~------------~~~~~~~m~~~e~ll~~ 364 (553)
||+..+. +..+..|..+|=.-++. ..|+.++...+|.++..
T Consensus 575 Vf~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~ 627 (795)
T 3pco_B 575 RFVPDTQ-APLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDL 627 (795)
T ss_dssp EEEECTT-SSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTT
T ss_pred EEecCCC-cccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHH
Confidence 9987543 22333455555443221 12688888888877754
No 121
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=49.65 E-value=6.4 Score=41.78 Aligned_cols=46 Identities=26% Similarity=0.435 Sum_probs=32.2
Q ss_pred EEEEEeCC----EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcC
Q 008808 467 SFDVFIRG----EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 467 ~fdl~~~G----~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g 534 (553)
-|+++..| ..||+|+. +| .|. ..|. | -.|..|||||+|||+.++..
T Consensus 310 vFe~~~~~~~~~~~i~~GGR--YD--~L~-----------------~~f~-g~~~pavGfaiGieRli~~L~e 360 (465)
T 3net_A 310 VYETTLIGHEALGSICSGGR--YE--ELV-----------------GTFI-GEKMPGVGISIGLTRLISRLLK 360 (465)
T ss_dssp EEEEEETTCGGGCCSSEEEE--ES--SSS-----------------GGGT-CSCCCEEEEEEEHHHHHHHHHH
T ss_pred EEEEEECCCCccceeccccc--HH--HHh-----------------hhhc-CCCCceeeeeccHHHHHHHHHH
Confidence 39999986 47888876 22 122 2222 3 35789999999999998864
No 122
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=49.38 E-value=1.3e+02 Score=26.19 Aligned_cols=82 Identities=11% Similarity=0.152 Sum_probs=52.3
Q ss_pred CCCCCEEEEEEEEe--ee-cc-CCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc
Q 008808 101 SLKDQEVLIRGRVH--TT-RP-VGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE 175 (553)
Q Consensus 101 ~~~g~~V~v~GrV~--~~-R~-~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~ 175 (553)
...|+.|+|.|.|. ++ |. .|..+.| .|.| ++.+|.|....-. . ..++.|.-|-++|.+...+
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~v~V~Y~Gil---P-------DlFrEGqgVVa~G~l~~~g-- 95 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQF-AVHDSLGGEILVTYDDLL---P-------DLFREGQGIVAQGVLGEDG-- 95 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEE-EEECTTCCCEEEEECSCC---T-------TSCCSSSEEEEEEEECSTT--
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEE-EEEcCCCCEEEEEECCCC---C-------ccccCCCeEEEEEEECCCC--
Confidence 46789999999996 34 54 3546776 5678 8889988887532 1 2578899999999986432
Q ss_pred cCCCceeEEEEEeEEEEeecCCCC--CCcccc
Q 008808 176 IKGATQQVEVQIKKLYCVSRAAKT--PITIED 205 (553)
Q Consensus 176 ~~~~t~~~Ei~v~~i~~ls~~~~~--P~~~~d 205 (553)
.+++++ ||.+|... |-.+.+
T Consensus 96 --------~F~A~e--VLaKhdekY~p~eva~ 117 (136)
T 1j6q_A 96 --------KLAATE--VLAKHDENYMPPEVAE 117 (136)
T ss_dssp --------SEEEEE--EECCC-----------
T ss_pred --------eEEEEE--EEecCCCCCCCHHHHH
Confidence 355554 78999765 644433
No 123
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=48.06 E-value=1.2e+02 Score=25.27 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=44.9
Q ss_pred CEEEEEEEEee---eccC--C-CceEEEEEE-------eCCeEEEEEeecCCCCcchHHHHH-HhcCCCCceEEEEEEEe
Q 008808 105 QEVLIRGRVHT---TRPV--G-NKLAFVVVR-------ERVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVIGVVS 170 (553)
Q Consensus 105 ~~V~v~GrV~~---~R~~--G-~kl~Fl~Lr-------d~~~~iQvv~~~~~~~~~~~~~~~-~~~l~~esiV~V~G~v~ 170 (553)
..|.+.|||-. +|-. | ..++=+.|- +....+.|++-.+ ..+. .+.|..||-|.|+|.+.
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk-------~AE~~~~yl~KG~~V~VeGrL~ 84 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGA-------VAQELQDRCRLNDEVVLEGRLR 84 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETH-------HHHHHHHHCCTTCEEEEEEEEE
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhH-------HHHHHHHhCCCCCEEEEEEEEE
Confidence 35667777765 3422 3 233333332 2345688888754 1233 35699999999999997
Q ss_pred cCCCc-cCCCc-eeEEEEEeEEE
Q 008808 171 VPDVE-IKGAT-QQVEVQIKKLY 191 (553)
Q Consensus 171 ~~~~~-~~~~t-~~~Ei~v~~i~ 191 (553)
...-. ..|.+ ...||.+.+|+
T Consensus 85 ~r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 85 INSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp EEC--------CCEEEEEEEEEE
T ss_pred eeeEECCCCCEEEEEEEEEEEEE
Confidence 54321 12333 23899888774
No 124
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=44.32 E-value=13 Score=36.30 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=42.8
Q ss_pred CcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH-cCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccc
Q 008808 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA-CGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRK 540 (553)
Q Consensus 462 ~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~-~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrd 540 (553)
..+.--+|+.++|+||.-= + + |.. -|++ =-|.++=+--|+|||.|.+-|.+||-|
T Consensus 133 GAwGLGWEVWldGMEITQF-T----Y------FQQvGGi~-------------c~pv~~EITYGLERiamylQ~vd~vyd 188 (298)
T 1j5w_A 133 GAWGVGWEVWLDGMEITQF-T----Y------FQQIGGIS-------------LKDIPLEITYGLERIAMYLQGVDNVYE 188 (298)
T ss_dssp TEEEEEEEEEETTEEEEEE-E----E------EEEBTTBC-------------CSSCCEEEEEEHHHHHHHHHTCSSGGG
T ss_pred ccccccceeeEcceeeehh-h----h------hhhcCCcc-------------cCccceeecccHHHHHHHHhCCCceec
Confidence 4567889999999999631 0 0 111 1232 147889999999999999999999998
Q ss_pred ccc
Q 008808 541 TSL 543 (553)
Q Consensus 541 v~~ 543 (553)
...
T Consensus 189 l~w 191 (298)
T 1j5w_A 189 VQW 191 (298)
T ss_dssp CEE
T ss_pred ccc
Confidence 754
No 125
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=43.77 E-value=14 Score=36.24 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=44.6
Q ss_pred CCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH-cCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCC
Q 008808 459 HDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA-CGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNN 537 (553)
Q Consensus 459 ~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~-~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~n 537 (553)
|.=..+.--+|+.++|+||.-= + + |.. -|++ . -|.++=+--|+|||.|.+-|.+|
T Consensus 142 PTLGAWGLGWEVWldGMEVTQF-T----Y------FQQvGGi~------------c-~pv~~EITYGLERlamylQ~vd~ 197 (311)
T 3rf1_A 142 PSLGAWGLGWEVWLDGMEVTQF-T----Y------FQQVGGIA------------V-DLVSAEITYGLERIAMYLQNVDN 197 (311)
T ss_dssp TTTTEEEEEEEEEETTEEEEEE-E----E------EEEETTEE------------C-SSCCEEEEEEHHHHHHHHTTCSS
T ss_pred CcccccccceEEEEcCeeEeee-e----e------eeeeCCcc------------c-cccceeeehhHHHHHHHHhCCCe
Confidence 3344578889999999999631 0 0 111 1222 1 47788999999999999999999
Q ss_pred ccccccc
Q 008808 538 IRKTSLY 544 (553)
Q Consensus 538 Irdv~~F 544 (553)
|-|...=
T Consensus 198 vyDl~w~ 204 (311)
T 3rf1_A 198 VYDIVWS 204 (311)
T ss_dssp GGGSEEE
T ss_pred eeecccc
Confidence 9997653
No 126
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=43.65 E-value=12 Score=42.47 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=45.9
Q ss_pred ccCCCCCCEEEEEEEEeeecc--CC-CceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCC--CceEEEEEEEec
Q 008808 98 LNGSLKDQEVLIRGRVHTTRP--VG-NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSN--ESIVDVIGVVSV 171 (553)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~R~--~G-~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~--esiV~V~G~v~~ 171 (553)
+.+-..|+.|+|.|.|.+... .| .+..=+.+.|+++.++++...... . .+.++. |..+.|.|+|..
T Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~-~-------~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 159 LNDLLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDY-L-------QTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp SSCCCSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCT-T-------HHHHHTTCSSCEEEEEEECS
T ss_pred HHHcCCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcHH-H-------HhhCccCCCCEEEEEEEEEE
Confidence 334456889999999987532 22 244446677988999999876421 1 234567 999999999975
No 127
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=43.07 E-value=8 Score=40.90 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=16.4
Q ss_pred CCC-cceeeecHHHHHHHHcC
Q 008808 515 APP-HGGFGVGLERVVMLFCG 534 (553)
Q Consensus 515 ~pP-~~G~GiGidRLvm~l~g 534 (553)
.|+ .+|||||+|||+..+.-
T Consensus 329 ~p~~~~gfgiGveRli~al~e 349 (458)
T 2i4l_A 329 APIHGGSYGVGVSRLLGAIIE 349 (458)
T ss_dssp EECEEEEEEEEHHHHHHHHHH
T ss_pred eceEEeeecccHHHHHHHHHH
Confidence 466 56999999999998754
No 128
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=42.68 E-value=9.6 Score=40.04 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=15.5
Q ss_pred CCcceeeecHHHHHHHHc
Q 008808 516 PPHGGFGVGLERVVMLFC 533 (553)
Q Consensus 516 pP~~G~GiGidRLvm~l~ 533 (553)
-|.-|||||+|||++++.
T Consensus 335 ~pavGfaigieRl~~~l~ 352 (464)
T 4g84_A 335 VPCVGLSIGVERIFSIVE 352 (464)
T ss_dssp CCEEEEEECHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHH
Confidence 467899999999998874
No 129
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=40.46 E-value=79 Score=26.12 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=31.5
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEE
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLY 191 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~ 191 (553)
..|+|++-.+ ..+++..+..|+.|.|+|.+...... ...+=++|+.+.
T Consensus 48 f~i~vv~wGk-------~AE~~~~~~kGs~V~VeGrL~trs~~----s~~lvlhi~~~~ 95 (101)
T 3en2_A 48 FSIEALGAGK-------MASVLDRIAPGTVLECVGFLARKHRS----SKALVFHISGLE 95 (101)
T ss_dssp EEEEEEEETH-------HHHHHTTSCTTCEEEEEEEEEECC--------CEEEEEEEEE
T ss_pred EEEEEEEEhH-------HHHHHhhcCCCCEEEEEEEEEeCcCC----CCeeEEEEeccc
Confidence 3488888753 23455678999999999999854321 224677776653
No 130
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=39.70 E-value=41 Score=26.10 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=35.8
Q ss_pred CCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE
Q 008808 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~ 166 (553)
.|+. +.|+|.++...| +|++|.++ +.+++..++ .+.. +...++.||.|.|.
T Consensus 5 ~G~i--v~G~V~~v~~~G---~fV~l~~~---~~Gllh~se--l~~~---~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 5 PGKF--YKGVVTRIEKYG---AFINLNEQ---VRGLLRPRD--MISL---RLENLNVGDEIIVQ 55 (80)
T ss_dssp TTCE--EEEEEEEEETTE---EEEEEETT---EEEEECGGG--CSSC---CGGGCCTTCEEEEE
T ss_pred CCCE--EEEEEEEEeCCE---EEEEECCC---CEEEEEHHH--CCcc---cceeeCCCCEEEEE
Confidence 4553 889999999988 89999653 778887653 2111 11469999988765
No 131
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=39.59 E-value=9.7 Score=41.39 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=15.7
Q ss_pred CCc-ceeeecHHHHHHHHcC
Q 008808 516 PPH-GGFGVGLERVVMLFCG 534 (553)
Q Consensus 516 pP~-~G~GiGidRLvm~l~g 534 (553)
+|+ ||||||+|||+.++..
T Consensus 435 ~p~~g~~giGveRli~~l~e 454 (572)
T 2j3l_A 435 SVIMGCYGIGVSRLLSAIVE 454 (572)
T ss_dssp ECEEEEEEEEHHHHHHHHHH
T ss_pred eeeeeccccCHHHHHHHHHH
Confidence 565 5899999999988753
No 132
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, ATP-binding, ligas nucleotide-binding, protein biosynthesis; NMR {Brugia malayi}
Probab=37.13 E-value=12 Score=31.93 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=21.3
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHH
Q 008808 19 QSISKKAAKKEAAKKAKEERRKEAE 43 (553)
Q Consensus 19 ~~~sk~~~kk~~k~~~k~~k~a~~~ 43 (553)
+++||+++||..|..+...+|++++
T Consensus 54 ~~~skSaLKKa~K~~~~~~kK~~k~ 78 (113)
T 2kqr_A 54 EAASKTALKKSWKRYEQEMLKNEKV 78 (113)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTCTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999998888887654
No 133
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=36.94 E-value=8.1 Score=43.42 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=42.7
Q ss_pred ceeEEEEEeCCEEEeec-eeccCCHHHHHHHHHHcC-CChhcHHHHHHHhhc-CCC-CcceeeecHHHHHHHHcCCCCcc
Q 008808 464 YSNSFDVFIRGEEIISG-AQRIHIPEFLAERAQACG-IDVKTISTYIDSFRY-GAP-PHGGFGVGLERVVMLFCGLNNIR 539 (553)
Q Consensus 464 ~~~~fdl~~~G~Ei~~G-~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~a~~~-G~p-P~~G~GiGidRLvm~l~g~~nIr 539 (553)
..-+.|+|++|+||.|= ++.-+.- ..| +.. .--+| -+| ++---|+|||||+|++-|.+|+=
T Consensus 197 ~Gpc~Ei~~dg~EiwnlVfmq~~r~--------~~g~~~~-------~~~~y~~l~~~~iDtG~GlER~~~~lqg~~s~y 261 (739)
T 2ztg_A 197 AGPCLEAIVGGLEVATLVFMNLEEH--------PEGDIEI-------KGARYRKMDNYIVDTGYGLERFVWASKGTPTVY 261 (739)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEC--------TTCCEEE-------TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHH
T ss_pred CCCeeEEEECCEEeeeeeeEEeeec--------CCCceee-------cCccccCCCCCeEecCcCHHHHHHHHcCCCchH
Confidence 56789999999999875 2211110 011 000 00001 133 68899999999999999999999
Q ss_pred cccccc
Q 008808 540 KTSLYP 545 (553)
Q Consensus 540 dv~~FP 545 (553)
|+ +|+
T Consensus 262 d~-~f~ 266 (739)
T 2ztg_A 262 DA-IFP 266 (739)
T ss_dssp HH-HCH
T ss_pred Hh-hHH
Confidence 98 664
No 134
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=36.92 E-value=38 Score=31.11 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=33.7
Q ss_pred CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHH-HhcCCCCceEEEE
Q 008808 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVI 166 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~-~~~l~~esiV~V~ 166 (553)
..|+ .+.|+|.++...| +|++|-+.+ .+.+++..++ ++...++. ...++.||.|.|.
T Consensus 14 ~~G~--iv~G~V~~I~~fG---aFV~L~e~~-g~eGLvhiSe--ls~~~v~~~~~~~~vGd~V~Vk 71 (182)
T 1kl9_A 14 EVED--VVMVNVRSIAEMG---AYVSLLEYN-NIEGMILLSE--LSRRRIRSINKLIRIGRNECVV 71 (182)
T ss_dssp CTTC--EEEEEEEEECSSE---EEEEETTTT-TEEEEEEGGG--C------------CTTCEEEEE
T ss_pred CCCC--EEEEEEEEEeccE---EEEEEccCC-CcEEEEEHHH--CCCcccCCHHHhcCCCCEEEEE
Confidence 3455 4789999999999 999995332 2888888763 33222222 2347777776654
No 135
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=36.91 E-value=21 Score=36.93 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=15.7
Q ss_pred CcceeeecHHHHHHHHcCC
Q 008808 517 PHGGFGVGLERVVMLFCGL 535 (553)
Q Consensus 517 P~~G~GiGidRLvm~l~g~ 535 (553)
|.-|||||+|||+.++...
T Consensus 301 pa~Gf~igieRl~~~l~e~ 319 (421)
T 1h4v_B 301 PGVGFAFGVERVALALEAE 319 (421)
T ss_pred CeEEEeecHHHHHHHHHhc
Confidence 4568999999999988753
No 136
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=36.22 E-value=14 Score=38.58 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=16.5
Q ss_pred CCcceeeecHHHHHHHHcCC
Q 008808 516 PPHGGFGVGLERVVMLFCGL 535 (553)
Q Consensus 516 pP~~G~GiGidRLvm~l~g~ 535 (553)
.|.-|||||+|||+.++...
T Consensus 305 ~pa~Gf~igveRl~~~l~e~ 324 (434)
T 1wu7_A 305 VPAVGFGMGDAVISLLLKRE 324 (434)
T ss_dssp CCEEEEEEEHHHHHHHHHHT
T ss_pred CCeEEEEEcHHHHHHHHHhc
Confidence 35678999999999998754
No 137
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=35.96 E-value=16 Score=38.63 Aligned_cols=91 Identities=18% Similarity=0.339 Sum_probs=52.9
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCC------CCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecC
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~ 326 (553)
.|-+.+-+||.++|-.-|.+--|++..- ..|-.+| +++||-+. .-...|+-..-+|.|+
T Consensus 7 eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~F------Kp~flG~~---------~p~~~r~t~sQkCiRa 71 (465)
T 1yfs_A 7 EIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPF------KNVFLGLE---------KRPYKRATSCQKCLRV 71 (465)
T ss_dssp HHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTT------HHHHHTSS---------CCSCSEEEEEEEEECE
T ss_pred HHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhh------hHHhcCCC---------CCCCCceecccccccc
Confidence 4556677899999998887666653110 1111222 12222211 1125788888899994
Q ss_pred C-------C-CCCCCCcCcccceeEEeccccCH--HHHHHHHHH
Q 008808 327 E-------D-SYTHRHLCEFTGLDVEMEIKKHY--SEVMDIVDR 360 (553)
Q Consensus 327 E-------~-~~t~rHl~EFt~lE~e~a~~~~~--~~~m~~~e~ 360 (553)
- + ..|.||.+=|.||=- .+|. || ++.+...=+
T Consensus 72 g~~hNDlenVG~t~rHhTfFEMLGN-fSFG-DYFK~eAI~~AwE 113 (465)
T 1yfs_A 72 SGKHNDLEQVGYTSRHHTFFEMLGN-FSFG-DYFKKEAIEYAWE 113 (465)
T ss_dssp ETTEECGGGBTTBSSCCSEEEEEEE-EESS-SCCHHHHHHHHHH
T ss_pred CCCcccHhhcCCCCCccchheeccc-cchh-hhhHHHHHHHHHH
Confidence 2 1 248899999999864 4675 45 344443333
No 138
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=35.10 E-value=17 Score=38.52 Aligned_cols=47 Identities=23% Similarity=0.440 Sum_probs=31.2
Q ss_pred EEEEEeCC----EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcCC
Q 008808 467 SFDVFIRG----EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCGL 535 (553)
Q Consensus 467 ~fdl~~~G----~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g~ 535 (553)
-|+.+.++ .-||+|+. .|- +.+ .+- | -.|..||++|+|||+.+|...
T Consensus 295 vFe~~~~~~g~~~tI~~GGR--YD~--Lv~-----------------~~g-~~~~PavGfa~gleRl~~~l~~~ 346 (467)
T 4e51_A 295 VFEWVTDKLGAQGTVAAGGR--YDP--LIE-----------------QLG-GKPTAACGWAMGIERILELLKEE 346 (467)
T ss_dssp EEEEEECC----CEEEEEEE--CTH--HHH-----------------HTT-SSCCCEEEEEEEHHHHHHHHHHT
T ss_pred EEEEEECCCCCcceecCCCc--HHH--HHH-----------------HhC-CCCCCceeehHHHHHHHHHHHhc
Confidence 38888874 36887765 332 322 221 2 346779999999999988753
No 139
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=35.07 E-value=17 Score=39.01 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=15.9
Q ss_pred CCCcceeeecHHHHHHHHc
Q 008808 515 APPHGGFGVGLERVVMLFC 533 (553)
Q Consensus 515 ~pP~~G~GiGidRLvm~l~ 533 (553)
--|..||++|+|||++++-
T Consensus 387 ~~pavGfa~gierl~~~le 405 (517)
T 4g85_A 387 KVPCVGLSIGVERIFSIVE 405 (517)
T ss_dssp CCCEEEEEECHHHHHHHHH
T ss_pred CCCcccccchHHHHHHHHH
Confidence 3567899999999998874
No 140
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=34.83 E-value=15 Score=38.05 Aligned_cols=18 Identities=50% Similarity=0.894 Sum_probs=15.1
Q ss_pred CcceeeecHHHHHHHHcC
Q 008808 517 PHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 517 P~~G~GiGidRLvm~l~g 534 (553)
|.-|||||+|||+.++..
T Consensus 300 pavGf~igveRl~~~l~e 317 (423)
T 1htt_A 300 PAVGFAMGLERLVLLVQA 317 (423)
T ss_dssp CEEEEEEEHHHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHh
Confidence 445899999999998874
No 141
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=31.32 E-value=18 Score=37.86 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhccc----CCCceeEEEeceecCC
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSIC----GDFGRVFETGPVFRAE 327 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~----~g~~rVfeIg~~FR~E 327 (553)
+.|-+.+-+||.++|-.-|.+--|++.. +-.+.+..|.-.-.|-... -...|+-..-+|.|.-
T Consensus 5 ~eiR~~Fl~FF~~kgH~~v~Ssslvp~~-------------DptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR~g 71 (441)
T 3hy0_A 5 AEIRQAFLDFFHSKGHQVVASSSLVPHN-------------DPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAG 71 (441)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSCSS-------------CTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEE
T ss_pred HHHHHHHHHHHHhCCCeEcCCCCccCCC-------------CCCceeecccchhhhhhhcCCCCCCCCCccccccceecC
Confidence 3456667789999998888655554311 1112222222111111111 1357888899999962
Q ss_pred -------CC-CCCCCcCcccceeEEeccccCH
Q 008808 328 -------DS-YTHRHLCEFTGLDVEMEIKKHY 351 (553)
Q Consensus 328 -------~~-~t~rHl~EFt~lE~e~a~~~~~ 351 (553)
+. .|.||.+=|.||== .+|. ||
T Consensus 72 GKHnDlenVG~t~rHhTfFEMLGN-fSFG-DY 101 (441)
T 3hy0_A 72 GKHNDLENVGYTARHHTFFEMLGN-FSFG-DY 101 (441)
T ss_dssp TTEECGGGBTTBSSCCSEEEEEEE-EESS-SC
T ss_pred CCCCCHHhhCCCCccccceeeccc-cccc-hh
Confidence 22 48899999999864 4675 45
No 142
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=31.25 E-value=37 Score=29.24 Aligned_cols=55 Identities=27% Similarity=0.332 Sum_probs=36.5
Q ss_pred CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHH-HHHhcCCCCceEEEE
Q 008808 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVI 166 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~-~~~~~l~~esiV~V~ 166 (553)
.+|+ .+.|.|.++...| +|+.|-++ +++++..++ ++...+ +....++.||.|.|.
T Consensus 6 ~vG~--iv~G~V~~i~~~G---~FV~l~~~---~~Glihise--l~~~~~~~~~~~~~vGd~V~vk 61 (130)
T 2k4k_A 6 EVGS--VYTGKVTGLQAYG---AFVALDEE---TQGLVHISE--VTHGFVKDINEHLSVGDEVQVK 61 (130)
T ss_dssp CTTC--EEEEEEEEEETTE---EEEEEETT---EEEEEEGGG--TSSSCCSCGGGTCCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEeCCe---EEEEECCC---cEEEEEHHH--CCcccccCccccCCCCCEEEEE
Confidence 3455 4689999999988 99999543 788888653 111100 112458999988765
No 143
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=29.69 E-value=1.2e+02 Score=26.31 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=36.4
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeec
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
.|+|++-.+.. + ...+.|+.||-|.|+|.+.... ...|. ..+.+++.+|..|+.
T Consensus 66 ~i~vv~wGk~A---E---~~~~yl~KGs~V~VeGrL~tr~-~k~G~-kr~~~~a~~i~~l~~ 119 (134)
T 1v1q_A 66 QMPVIVSGHEN---Q---AITHSITVGSRITVQGFISCHK-AKNGL-SKMVLHAEQIELIDS 119 (134)
T ss_dssp EEEEEEESTGG---G---GGGTTCCTTCEEEEEEEEEEEC-TTTTS-CEEEEEEEEEEETTS
T ss_pred EEEEEEEhHHH---H---HHHHhcCCCCEEEEEEEEEEEE-CCCCC-EEEEEEEEEEEECcC
Confidence 48888876521 1 1234699999999999998542 11221 246778999999864
No 144
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=29.44 E-value=15 Score=41.40 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=24.7
Q ss_pred CcceeeecHHHHHHHHcCCCCcccccccc
Q 008808 517 PHGGFGVGLERVVMLFCGLNNIRKTSLYP 545 (553)
Q Consensus 517 P~~G~GiGidRLvm~l~g~~nIrdv~~FP 545 (553)
+|---|+|||||++.+-|.+|+=|+ +|+
T Consensus 245 ~~IDTGmGlERl~~vlQg~~snydt-~f~ 272 (752)
T 2zze_A 245 XVVDTGYGLERLVWMSQGTPTAYDA-VLG 272 (752)
T ss_dssp EEEEEEEEHHHHHHHHHCCSSHHHH-HSH
T ss_pred cccccccCHHHHHHHHcCCCchHHH-HHH
Confidence 4678899999999999999999988 664
No 145
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=29.17 E-value=42 Score=30.60 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=33.1
Q ss_pred CCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEE
Q 008808 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVI 166 (553)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~ 166 (553)
.|+ .+.|+|.++...| +|++|-+.. .+.+++..++ ++...++.. ..++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~i~~fG---aFV~L~e~~-gveGLvhiSe--ls~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDD--IVMVNVQQIAEMG---AYVKLLEYD-NIEGMILLSE--LSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTC--EEEEEEEEEETTE---EEEEETTTT-TCEEEEECC----------CCCCCCCTTSEEEEE
T ss_pred CCC--EEEEEEEEEecce---EEEEEcCCC-CcEEEEEHHH--cCCcccCCHHHcCCCCCEEEEE
Confidence 455 4789999999999 999994222 2678888763 222111111 236777766654
No 146
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=28.28 E-value=2.4e+02 Score=22.90 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=52.8
Q ss_pred CCCCCEEEEEEEEee---ecc-CCCceEEEEEEeC---CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec-C
Q 008808 101 SLKDQEVLIRGRVHT---TRP-VGNKLAFVVVRER---VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-P 172 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~---~R~-~G~kl~Fl~Lrd~---~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~-~ 172 (553)
...|+.++|.|-|.. .|. .|..+.| .|.|. +.+|.|....-. . ..++.|.-|-++|.+.. .
T Consensus 5 ~~~~~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~~~v~V~Y~Gil---P-------DlFrEGqgVV~~G~l~~~~ 73 (94)
T 2kct_A 5 QDKLHTVRLFGTVAADGLTMLDGAPGVRF-RLEDKDNTSKTVWVLYKGAV---P-------DTFKPGVEVIIEGGLAPGE 73 (94)
T ss_dssp SCTTCCEEEEEEECSTTCEECTTSSEEEE-EEECSSCTTCEEEEEEESCC---C-------TTCCTTCEEEEEEEECTTC
T ss_pred CCCCCeEEEeeEEeCCeEEecCCCCEEEE-EEEcCCCCCcEEEEEECCCC---C-------ccccCCCeEEEEEEEeCCC
Confidence 457899999999974 354 3546776 55777 789999887542 1 25778999999999864 2
Q ss_pred CCccCCCceeEEEEEeEEEEeecCCC
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAAK 198 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~~ 198 (553)
+ .+.+++ ||.+|..
T Consensus 74 g----------~F~A~e--vLaKh~e 87 (94)
T 2kct_A 74 D----------TFKART--LMTKCPL 87 (94)
T ss_dssp S----------EEEEEE--EEESSCC
T ss_pred C----------EEEEeE--EEEeCCC
Confidence 2 355654 6888853
No 147
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.75 E-value=48 Score=27.20 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=36.8
Q ss_pred CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchH-HHHHHhcCCCCceEEEE
Q 008808 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVI 166 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~-~~~~~~~l~~esiV~V~ 166 (553)
..|+ .+.|+|.++...| +|++|.+-...+.+++..++-. +.. ..+....++.||.|.|.
T Consensus 11 ~vG~--i~~G~V~~v~~fG---~FV~l~~~~~~~~Glvhisel~-~~~~~~~~~~~~~~Gd~V~Vk 70 (103)
T 2eqs_A 11 TIGD--IYNGKVTSIMQFG---CFVQLEGLRKRWEGLVHISELR-REGRVANVADVVSKGQRVKVK 70 (103)
T ss_dssp CTTC--EEEEEEEEECSSC---EEEEECSSSSCCEEEECGGGTS-SSSCCCCHHHHCCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEeccE---EEEEEcCCCCCeEEEEEHHHCC-CCcccCCcccEeCCCCEEEEE
Confidence 4565 4789999999999 8999965212467777765310 100 00112358899988765
No 148
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=26.71 E-value=2.9e+02 Score=23.37 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=42.2
Q ss_pred EEEEeCCeEEEE-EeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecC
Q 008808 126 VVVRERVSTVQC-LATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 126 l~Lrd~~~~iQv-v~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
+.|.|+...+|+ |+..+. .++++ ...|.+++||.|.-.....-+ .++--|.+.++.+|.++
T Consensus 47 l~lSDG~~~~~~~mLatql----n~~v~-~g~l~~~sIirl~~y~~~~v~-----~~k~vliIl~levl~~~ 108 (123)
T 2b29_A 47 LLMSDGLNTLSSFMLATQL----NPLVE-EEQLSSNCVCQIHRFIVNTLK-----DGRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEECSSEEEEEEEECGGG----HHHHH-TTSSCTTCEEEEEEEEEEECS-----SSCEEEEEEEEEEEECS
T ss_pred EEEECcchheeeehhHHHH----HHHHh-cCCccCCCEEEEEEEEEEEec-----CCcEEEEEEeeEEeecc
Confidence 789999999998 988652 12222 246999999999876443211 02356778899999873
No 149
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=26.46 E-value=32 Score=35.42 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=15.0
Q ss_pred CCcceeeecHHHHHHHHc
Q 008808 516 PPHGGFGVGLERVVMLFC 533 (553)
Q Consensus 516 pP~~G~GiGidRLvm~l~ 533 (553)
-|.-|||+|+|||+.++-
T Consensus 301 ~P~vg~~igveRl~~~le 318 (420)
T 1qe0_A 301 ETGIGFALSIERLLLALE 318 (420)
T ss_dssp CEEEEEEEEHHHHHHHHH
T ss_pred CCEEEEEecHHHHHHHHH
Confidence 345699999999999874
No 150
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=26.19 E-value=17 Score=38.34 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.7
Q ss_pred CCCcceeeecHHHHHHHHcC
Q 008808 515 APPHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 515 ~pP~~G~GiGidRLvm~l~g 534 (553)
.++.+|||+| |||+..|.-
T Consensus 248 ~v~~~~~Gig-eRli~alie 266 (459)
T 1nj8_A 248 YAYQTCYGIS-DRVIASIIA 266 (459)
T ss_dssp ECEEEEEEEC-THHHHHHHH
T ss_pred eeeEeeccHH-HHHHHHHHH
Confidence 3567999999 999998853
No 151
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=26.11 E-value=1.1e+02 Score=26.17 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=33.2
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCcee-EEEEEeEEE
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLY 191 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~-~Ei~v~~i~ 191 (553)
.-+.|++-.+ ......+.|..||-|.|+|.+....-...|.+.. +||.+.+|-
T Consensus 63 ~w~~v~~wg~------~Ae~~~~~l~KG~~V~VeGrL~~~~~dkdG~~r~~~ev~a~~vg 116 (128)
T 4dam_A 63 NFFTVWANRQ------LATNASGSLAVGDPVVVQGRLKVRTDVREGQSRTSADIDAVAIG 116 (128)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEEEEEEEcH------HHHHHHHhcCCCCEEEEEEEEEEeEEcCCCCEEEEEEEEEEEEE
Confidence 4577777643 1112345699999999999987543222343333 888887763
No 152
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=24.67 E-value=29 Score=31.83 Aligned_cols=57 Identities=14% Similarity=0.000 Sum_probs=35.0
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEE---EEeEEEEeec
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEV---QIKKLYCVSR 195 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei---~v~~i~~ls~ 195 (553)
..+.|++-.+ ......+.|++||.|.|+|.+....- ...+.+.. +|| .+.+|.+|..
T Consensus 54 ~~i~vv~wg~------~Ae~~~~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~ 115 (178)
T 1eqq_A 54 EWHRVVLFGK------LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 115 (178)
T ss_dssp EEEEEEECHH------HHHHHHHHCCTTCEEEECCEEEEEEEECSSSEEEEEEEEECSSSCCEECSCC
T ss_pred EEEEEEEccH------HHHHHHHhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEeeeecCeEEEccc
Confidence 3577777643 11123456999999999999875421 11233222 777 6677777753
No 153
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=23.99 E-value=20 Score=38.06 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=15.0
Q ss_pred CCcceeeecHHHHHHHHcC
Q 008808 516 PPHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 516 pP~~G~GiGidRLvm~l~g 534 (553)
|+.+|||+| +||+.+|.-
T Consensus 254 ~~~~~~Gig-eRli~~lie 271 (477)
T 1hc7_A 254 VHTTSWGLS-WRFIGAIIM 271 (477)
T ss_dssp CEEEEEEEE-THHHHHHHH
T ss_pred eeEeeccHH-HHHHHHHHH
Confidence 556899999 999988853
No 154
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=22.60 E-value=85 Score=26.48 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecC-CCCceecccChhhHhhhcc
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQMSI 310 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~-~~~~~~L~~SPql~lk~li 310 (553)
.|..+++++.+|+.++|+ ||.|.-.+.-.|..+= ..| .+-..-|-+||+-.....|
T Consensus 8 ~rPYLiRA~yeWi~DN~~----TP~l~Vda~~~~v~VP-~~~v~dGqIvLNIsp~Av~~L~i 64 (111)
T 1ou8_A 8 KRPYLLRAYYDWLVDNSF----TPYLVVDATYLGVNVP-VEYVKDGQIVLNLSASATGNLQL 64 (111)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBCC-GGGCBTTEEEEECSTTTCEEEEE
T ss_pred CccHHHHHHHHHHHhCCC----cceEEEEcCCCCCcCC-HHHhcCCEEEEECChhhhcCeEE
Confidence 467789999999999998 9999765543343311 112 3457788899887766443
No 155
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=21.90 E-value=97 Score=26.43 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecC-CCCceecccChhhHhhhcc
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQMSI 310 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~-~~~~~~L~~SPql~lk~li 310 (553)
.|..+++++.+|+.++|+ ||.|.-.+.-.|..+= ..| .+-..-|-+||+-.....|
T Consensus 9 ~rPYLiRA~yeWi~DN~~----TP~l~Vda~~~~v~VP-~~~v~dGqIVLNIsp~Av~~L~i 65 (118)
T 1yfn_A 9 RRPYLLRAFYEWLLDNQL----TPHLVVDVTLPGVQVP-MEYARDGQIVLNIAPRAVGNLEL 65 (118)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBSC-GGGCBTTEEEEECSGGGCEEEEE
T ss_pred CccHHHHHHHHHHHcCCC----cceEEEEcCCCCccCC-HHHhcCCEEEEECChhhhcCeEE
Confidence 467789999999999999 9999765543443311 122 2457788899987766443
No 156
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=21.47 E-value=47 Score=27.81 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=36.4
Q ss_pred CCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE
Q 008808 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~ 166 (553)
-..|+. +.|.|.++...| +|+.|..+ +.+++..++-..+....+....++.||.|.|.
T Consensus 28 ~~~G~~--~~G~V~~v~~~G---~FV~l~~~---~~Glvhisel~~~~~~~~~~~~~~vGd~V~vk 85 (115)
T 2khi_A 28 YPEGTK--LTGRVTNLTDYG---CFVEIEEG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVM 85 (115)
T ss_dssp SCSSCE--EEEEEEEEETTE---EEEECSTT---CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEE
T ss_pred CCCCCE--EEEEEEEEECCE---EEEEECCC---CEEEEEHHHCCccccccCcccEECCCCEEEEE
Confidence 456774 789999999998 89999432 77888765311000000111348889987665
No 157
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=21.16 E-value=3e+02 Score=21.58 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=36.8
Q ss_pred CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecC-CCCcchHHHHHH-hcCCCCceEEEE
Q 008808 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVK-PDSVSKEMVRFV-RSLSNESIVDVI 166 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~-~~~~~~~~~~~~-~~l~~esiV~V~ 166 (553)
..|+ .+.|+|. +...| +|+.|.+ .+.+.+++..+ + .+...+... ..+ .|+.|.|.
T Consensus 10 ~vG~--~~~G~V~-v~~fG---~FVel~~-~~~~eGLvhis~e--l~~~~~~~~~~~~-~Gd~V~Vk 66 (88)
T 1luz_A 10 NAGD--VIKGRVY-EKDYA---LYIYLFD-YPHFEAILAESVK--MHMDRYVEYRDKL-VGKTVKVK 66 (88)
T ss_dssp CTTC--EEEEEEE-EETTE---EEEEETT-CTTSEEEEGGGSS--CCHHHHHHHHHHH-TTCEEEEE
T ss_pred CCCC--EEEEEEE-EEccE---EEEEECC-CCCeEEEEEeeHH--hCcccccCHhHEe-CCCEEEEE
Confidence 4555 4789999 99999 8999943 12467888876 4 333333333 336 99988876
No 158
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=20.38 E-value=31 Score=36.89 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=15.3
Q ss_pred CCcceeeecHHHHHHHHcC
Q 008808 516 PPHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 516 pP~~G~GiGidRLvm~l~g 534 (553)
|+.+|||+| +|++..|+-
T Consensus 281 ~h~~g~Gig-eRli~aliE 298 (501)
T 1nj1_A 281 VHQTCYGLS-DRVIASVIA 298 (501)
T ss_dssp CEEEEEEEC-THHHHHHHH
T ss_pred eeeccccHH-HHHHHHHHH
Confidence 556899999 999998864
Done!