RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 008808
(553 letters)
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 286 bits (732), Expect = 7e-93
Identities = 198/358 (55%), Positives = 249/358 (69%), Gaps = 9/358 (2%)
Query: 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 259
PI +EDASRSEAE E A LP VN DTRL+ RVID+RT+ NQ IFRIQ+ V +FR
Sbjct: 1 PILLEDASRSEAEAEAA-----GLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFR 55
Query: 260 QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFE 319
++L ++ F E+HTPKL+ SEGGS+VF + Y A LAQSPQ +KQ I DF RV+E
Sbjct: 56 EYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYE 115
Query: 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEA 379
GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D + LFV IF L E+E
Sbjct: 116 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIEL 175
Query: 380 VAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYG 437
V KQYP E K K +RLT++EG++ML+ AG EI DL+TE+E+ LG+LV +KY
Sbjct: 176 VRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYD 235
Query: 438 TEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQAC 497
T+FYIL ++PL +RPFYTMP N YSNS+D F+RGEEI+SGAQRIH L ER +A
Sbjct: 236 TDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAH 295
Query: 498 GIDVK--TISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+ + + Y D F YG PPH G G+GLERVVM + L NIR+ SL+PRDP R+ P
Sbjct: 296 GLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP 353
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 241 bits (617), Expect = 2e-76
Identities = 113/311 (36%), Positives = 172/311 (55%), Gaps = 8/311 (2%)
Query: 235 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294
R + +R + ++Q+ + FR++L ++F EI TPK++ +EGGS +F +DY +
Sbjct: 2 RYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEK 61
Query: 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEV 354
A LAQSPQ + + G F RV+E PV+R E+ +T RHL E+ LDVEM ++
Sbjct: 62 RAYLAQSPQ-LYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDL 120
Query: 355 MDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEI 414
M + + L + + N E+ + +P P LT E ++LK+ +
Sbjct: 121 MRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPR----LTHAEAKRILKE-ELGY 175
Query: 415 DPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG 474
DL+ E+ER LG+ E++G+++ + RYP +VRPFYT P D + SFD+ RG
Sbjct: 176 PVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDG--TTRSFDLLFRG 233
Query: 475 EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCG 534
EI SG QRIH E L E +A G+D + Y++ F+YG PPHGGF +G ER+ G
Sbjct: 234 LEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLG 293
Query: 535 LNNIRKTSLYP 545
L N+R +P
Sbjct: 294 LPNVRYARAFP 304
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 228 bits (582), Expect = 6e-71
Identities = 126/331 (38%), Positives = 189/331 (57%), Gaps = 4/331 (1%)
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ DTRLNNR +D+R IF+I+S V R F F+EIHTPK+IA ++EG
Sbjct: 9 KVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEG 68
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
G+ +F + Y + A LA+SPQL+K++ + RV+E P+FRAE+ T RHL E +D
Sbjct: 69 GTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSID 128
Query: 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 402
EM + EVM ++RL + + KEL+ FE + K R+++++
Sbjct: 129 SEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELD----ILNFELEEPKLPFPRVSYDK 184
Query: 403 GVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNS 462
+++L D G EI D++TE ER LG+ ++E Y L++YP +PFY M +
Sbjct: 185 ALEILGDLGKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKP 244
Query: 463 LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFG 522
+FD+ RG EI SG QR H + L E+ + G++ ++ Y+ +FRYG PPHGGFG
Sbjct: 245 EICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFG 304
Query: 523 VGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
+G ER++ L NIR+ L+PRD R+ P
Sbjct: 305 LGAERLIKQMLDLPNIREVILFPRDRRRLTP 335
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 215 bits (547), Expect = 2e-65
Identities = 94/365 (25%), Positives = 146/365 (40%), Gaps = 45/365 (12%)
Query: 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 259
P ++ R E E E +++ RL R +D+R Q R++ +V
Sbjct: 3 PFPVDAGWRGEEEKE-----------ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIW 51
Query: 260 QFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRV 317
FL E FV++ TP L + EG G L QSPQL KQM + R
Sbjct: 52 DFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRY 111
Query: 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKEL 377
F+ FR ED R +FT LD+EM +V+++ +RL +F V
Sbjct: 112 FQIARCFRDEDLRADRQ-PDFTQLDLEMSFV-EVEDVLELNERLMAHVFREALGVELP-- 167
Query: 378 EAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEID-----PLGDLNTESERKLGQLV 432
PF L Y+ R ++ L+ G PL + + E E
Sbjct: 168 ------LPFPRLSYEEAMERYGSDK--PDLRREGFRFLWVVDFPLLEWDEEEEA------ 213
Query: 433 LEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAE 492
Y + +P + P +L +D+ + G E+ G+ RIH P A
Sbjct: 214 -WTYMHHPFT-SPHPEDLPLLEKDPGRVRALA---YDLVLNGVEVGGGSIRIHDPRLQAR 268
Query: 493 RAQACGIDVKTI----STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDP 548
+ GI + ++++ YGAPPHGG GL+R++ L G +IR+ +P++
Sbjct: 269 VFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNK 328
Query: 549 LRIAP 553
P
Sbjct: 329 EGKDP 333
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 210 bits (535), Expect = 9e-64
Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 25/329 (7%)
Query: 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA 285
++ RL R +D+R + ++++ ++ R+F+ F++I TP L + EG
Sbjct: 10 NTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARD 69
Query: 286 --VFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
V +KG+ L QSPQL KQ+ + F R ++ FR ED R EFT +DV
Sbjct: 70 YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDV 128
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
E +V ++++ L ++ + V + + + +Y L E
Sbjct: 129 ETSFM-TAPQVREVMEALVRHLWLEVKGVDLGDFPVM--TFAEAERRYGSDKPDLRDES- 184
Query: 404 VQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSL 463
K A + + + E L + + + +
Sbjct: 185 ----KWAPLWVIDFPMFEDDGEGGLTAM-------HHPFTSPKDM---TAAELKAAPENA 230
Query: 464 YSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTI----STYIDSFRYGAPPHG 519
+N++D+ I G E+ G+ RIH + GI+ + +D+ +YG PPH
Sbjct: 231 VANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHA 290
Query: 520 GFGVGLERVVMLFCGLNNIRKTSLYPRDP 548
G GL+R+ ML G +NIR +P+
Sbjct: 291 GLAFGLDRLTMLLTGTDNIRDVIAFPKTT 319
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 201 bits (513), Expect = 3e-61
Identities = 61/322 (18%), Positives = 114/322 (35%), Gaps = 47/322 (14%)
Query: 237 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVFRL 289
++I + IQ+++ F + E F + L + G +
Sbjct: 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV 62
Query: 290 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEI 347
+ G L S LHKQ++I ++F P R E RH EFT LD E+E
Sbjct: 63 EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER 122
Query: 348 KKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 407
++M +++RL +F + PKT R E ++L
Sbjct: 123 A-KMEDIMRLIERLVYGLFRKAEEWTGR---------------EFPKTKRFEVFEYSEVL 166
Query: 408 KDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNS 467
++ G + ++ + + + + D +
Sbjct: 167 EEFGSDE---------------------KASQEMEEPFWIINIPREFYDREVDGFWRNYD 205
Query: 468 FDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGA-PPHGGFGVGLE 526
+ E+ SG +R E + + + G++ + Y++ + G P G G+G+E
Sbjct: 206 LILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVE 265
Query: 527 RVVMLFCGLNNIRKTSLYPRDP 548
R+V G +I + +PR P
Sbjct: 266 RLVRFIVGAKHIAEVQPFPRIP 287
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 199 bits (506), Expect = 1e-59
Identities = 80/342 (23%), Positives = 141/342 (41%), Gaps = 25/342 (7%)
Query: 228 QDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV 286
Q+ R R +D I ++ F ++S++ RQF+++ F+E+ TP + +
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARP 61
Query: 287 FR--LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
F + L +P+L+ + + G F RVFE FR E + RH EFT +++
Sbjct: 62 FITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELY 120
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKEL--EAVAKQYPFEPLKYKPKTLRLTFEE 402
M ++ +++++ + LF T+ + K PFE L + + E
Sbjct: 121 MAYADYH-DLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPET 179
Query: 403 GVQMLKDAGVEIDPLGDLN--TESERKLGQLVLE-------KYGTEFYILHRYPLAVRPF 453
+ L + + E LG++V E + + + YP V P
Sbjct: 180 DMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPL 239
Query: 454 YTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTI--------S 505
+ + + F+ FI G EI +G ++ E AER Q
Sbjct: 240 ARRNDVNPEIT-DRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDE 298
Query: 506 TYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRD 547
Y+ + YG PP G G+G++R++MLF + IR L+P
Sbjct: 299 DYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAM 340
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 87.8 bits (217), Expect = 3e-21
Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWT-VVGALNGSLKDQEVLIRGRVHTTRPVG 120
+NYG +PL +QS + +TG ++ V D+EVL R RVH TR G
Sbjct: 3 DNYGKLPL--IQSRDSDRTG--------QKRVKFVDLDEAKDSDKEVLFRARVHNTRQQG 52
Query: 121 NKLAFVVVRERVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179
LAF+ +R++ S +Q L ++SK MV++ SL+ ESIV V G+V D IK A
Sbjct: 53 ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSA 112
Query: 180 -TQQVEVQIKKLYCVSRAAK 198
Q +E+ I K+Y +S +
Sbjct: 113 TVQNLEIHITKIYTISETPE 132
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 53.5 bits (128), Expect = 1e-09
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
+ L Q+V + G V + +G + F+ +R+R VQ T V E+ + +
Sbjct: 8 SEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQI--TAPKKKVDPELFKLIP 64
Query: 156 SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196
L +E +V V GVV A E+ +K+ ++RA
Sbjct: 65 KLRSEDVVAVEGVV----NFTPKAKLGFEILPEKIVVLNRA 101
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 50.6 bits (121), Expect = 9e-09
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
QEV + G +H R +G ++ F+++R+R VQ + ++ ES +
Sbjct: 13 GQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQV------------VTGGLKLPLPESAL 59
Query: 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPI 201
V G+V VE A +EVQ K++ +S A P
Sbjct: 60 RVRGLV----VENAKAPGGLEVQAKEVEVLSP-ALEPT 92
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
{Escherichia coli [TaxId: 562]}
Length = 106
Score = 48.9 bits (116), Expect = 5e-08
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q+V + G V+ R +G L F+ +R+R VQ D + ++
Sbjct: 7 GQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVF----FDPDRADALKLAS 61
Query: 156 SLSNESIVDVIGVVSVPDVEIKG---ATQQVEVQIKKLYCVSRA 196
L NE + V G V D + AT ++EV L ++RA
Sbjct: 62 ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA 105
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 104
Score = 45.0 bits (106), Expect = 1e-06
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G+L + +EV++ G V+ R +G L F+ +R+R VQ P S + VR
Sbjct: 8 GSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQL--VAHPASPAYATAERVR 64
Query: 156 SLSNESIVDVIGV-VSVPDVEIKGATQQVEVQIKKLYCVSRA 196
E +V G+ P+ + AT +VEV++ L ++ A
Sbjct: 65 ---PEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 38.5 bits (89), Expect = 0.001
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 454 YTMPCHDNSLYSNSFDVFI------RGEEIISGAQRIHIPEFLAERAQACGIDVKTISTY 507
+ + E+ + P+ A + +
Sbjct: 167 VRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAG--MVHPKVFQ----AVDAYRERLGLP 220
Query: 508 IDSFRYGAPPHGGFGVGLERVVMLFCGLNNIR 539
FG+G+ER+ ML G+ +IR
Sbjct: 221 PAYRGVTGF---AFGLGVERLAMLRYGIPDIR 249
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.2 bits (70), Expect = 0.055
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAAS 47
+ + SKK AK AAK A E KE +A +
Sbjct: 51 IIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSP 89
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 28.0 bits (62), Expect = 0.73
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKA 34
+ S + SKK AK +AA+
Sbjct: 46 TIDGVTYGSGTASSKKLAKNKAARAT 71
>d2mev1_ b.121.4.1 (1:) Mengo encephalomyocarditis virus coat
proteins {Mengovirus [TaxId: 12107]}
Length = 268
Score = 28.0 bits (62), Expect = 2.9
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 11/56 (19%)
Query: 505 STYIDSFRYGAPPHGGFG------VGLERVVMLFCGLNNIRKTSLY-PRDPLRIAP 553
+ ++ G P+ FG + ++ N+R ++ PR P P
Sbjct: 206 KRFDNTGDLGIAPNSDFGTLFFAGTKPDIKFTVYLRYKNMR---VFCPR-PTVFFP 257
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 28.0 bits (61), Expect = 3.4
Identities = 51/307 (16%), Positives = 94/307 (30%), Gaps = 33/307 (10%)
Query: 249 RIQSQVGNIFRQFLLSENFVEIHTP----------KLIAGSSEGGSAVFRLDYKGQSACL 298
R+ ++ R+ L + +E+ TP + A + +F +G +
Sbjct: 17 RMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLT 76
Query: 299 AQSPQL--------HKQMSICGDFGRVFETGPVFRAEDSYTHR--HLCEFTGLDVEMEIK 348
+ M + R++ GP+FRAE R + + E
Sbjct: 77 LRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENP 136
Query: 349 KHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408
+E + ++ + + K + Y + L E + K
Sbjct: 137 ILDAEAVVLLYECLKELGL--RRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSK 194
Query: 409 DAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSF 468
+ +E +P+ L+++SER L L A S+
Sbjct: 195 E-RLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERHLERLSVPYELE 253
Query: 469 DVFIRGEEIISG-AQRIHIPEFLAERAQACGIDVKTISTY---IDSFRYGAPPHGGFGVG 524
+RG + A +H E A+ A G Y + P GF G
Sbjct: 254 PALVRGLDYYVRTAFEVHHEEIGAQSALGGG------GRYDGLSELLGGPRVPGVGFAFG 307
Query: 525 LERVVML 531
+ERV +
Sbjct: 308 VERVALA 314
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 69
Score = 25.6 bits (56), Expect = 4.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKA 34
+V + ++ + +KK A+KEAA+ A
Sbjct: 39 RVNGKTIATGKGRTKKEAEKEAARIA 64
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 68
Score = 25.3 bits (55), Expect = 4.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 22 SKKAAKKEAAKKA 34
SKK A++ AA++
Sbjct: 51 SKKEAEQRAAEEL 63
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 27.6 bits (61), Expect = 4.8
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 339 TGLDVEMEIKKHYSEVMDIVDRLFVTI--FDGLNNVCKKELEAVAKQY 384
TGL+ E ++ Y E++D + L + D L V ++ELE V +Q+
Sbjct: 438 TGLEHE-KLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 484
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.8 bits (56), Expect = 4.8
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 22 SKKAAKKEAAKKAKEERRKEAEAAASAA 49
SK+ A+ AAK A + E + +
Sbjct: 58 SKQEARNAAAKLAVDILDNENKVDCHTS 85
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 27.4 bits (60), Expect = 5.6
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Query: 404 VQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSL 463
V LK + + L DL E+ Q +K EF L+ + +
Sbjct: 61 VAELKANDINVVELIDLVAETYDLASQEAKDKLIEEFLEDSEPVLSEEHKVVVRNFLKAK 120
Query: 464 YSN--SFDVFIRGEEIISGAQRIHIPEFL 490
++ ++ + G +
Sbjct: 121 KTSRELVEIMMAGITKYDLGIEADHELIV 149
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 25.6 bits (55), Expect = 5.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 9 KVQEEVDSSSQSISKKAAKKEAAKKAKEERRKE 41
K+ ++ S +K+ AK+ AAK A + E
Sbjct: 51 KMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSE 83
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit
(RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 26.0 bits (57), Expect = 6.7
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 154 VRSLSNESIVDVIGVV-SVPDV-EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEA 211
+ + S +S+VD+IG+ S D +I + EV K I + D S
Sbjct: 10 LENKSKDSLVDIIGICKSYEDATKITVRSNNREVA-----------KRNIYLMDTSGKVV 58
Query: 212 EIEKASKEGVQLPRVNQD 229
++ + Q
Sbjct: 59 TATLWGEDADKFDGSRQP 76
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 26.9 bits (58), Expect = 7.1
Identities = 44/312 (14%), Positives = 86/312 (27%), Gaps = 39/312 (12%)
Query: 249 RIQSQVGNIFRQFLLSENFVEIHTPK------LIAGSSEGGSAVFRLDYKGQSACL---- 298
RI+ + N+ + + EI P E V + Y +
Sbjct: 21 RIEGTLKNVLGSY----GYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLT 76
Query: 299 -------AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY 351
+ + R++ GP+FR E R+ ++
Sbjct: 77 LRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPD 136
Query: 352 SEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411
+ I+ G++ EL + E L E+ + L +
Sbjct: 137 IDAELIMLTARWWRALGISEHVTLELNS---IGSLEARANYRDALVAFLEQHKEKLDEDC 193
Query: 412 VE---IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSF 468
+PL L++++ L ++ L +
Sbjct: 194 KRRMYTNPLRVLDSKNPEVQALLNDAPALGDY--LDEESREHFAGLCKLLESAGIAYTVN 251
Query: 469 DVFIRGEEIISG-AQRIHIPEFLAERAQACGIDVKTISTY---IDSFRYGAPPHGGFGVG 524
+RG + + ++ G Y ++ A P GF +G
Sbjct: 252 QRLVRGLDYYNRTVFEWVTNSLGSQGTVCAG------GRYDGLVEQLGGRATPAVGFAMG 305
Query: 525 LERVVMLFCGLN 536
LER+V+L +N
Sbjct: 306 LERLVLLVQAVN 317
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain
{Thermotoga maritima [TaxId: 2336]}
Length = 281
Score = 26.6 bits (59), Expect = 7.2
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 13/46 (28%)
Query: 495 QACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRK 540
Q GI +K GLER+ M G++N+ +
Sbjct: 144 QIGGISLK-------------DIPLEITYGLERIAMYLQGVDNVYE 176
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 25.8 bits (56), Expect = 7.9
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 6 EPPKVQEEVDSSSQSISKKAAKKEAAKKA--KEERRKEAEAAASAASA 51
++ + + +KK A + A + EA +S S+
Sbjct: 65 YIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVIEAYSSGPSS 112
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506
{Streptomyces coelicolor [TaxId: 1902]}
Length = 277
Score = 26.4 bits (57), Expect = 8.6
Identities = 17/146 (11%), Positives = 36/146 (24%), Gaps = 10/146 (6%)
Query: 377 LEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDP-LGDLNTESERKLGQLV--L 433
+ + + Y L+ DA V I N + G V L
Sbjct: 111 AQLLLSERFGVQPDYYTCPPDLSLMMQE---ADAAVLIGDAALRANMIDGPRYGLDVHDL 167
Query: 434 EKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAER 493
E+ L + + + F+ + + + +
Sbjct: 168 GALWKEWTGLPFVFAVWAARRDYAEREPVITRKVHEAFLASRNLSLE----EVEKVAEQA 223
Query: 494 AQACGIDVKTISTYIDSFRYGAPPHG 519
A+ D T++ Y + +
Sbjct: 224 ARWEAFDEDTLAKYFTTLDFRFGAPQ 249
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.379
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,988,434
Number of extensions: 95866
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 40
Length of query: 553
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 463
Effective length of database: 1,171,896
Effective search space: 542587848
Effective search space used: 542587848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)