Query 008809
Match_columns 552
No_of_seqs 462 out of 3415
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 12:12:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 100.0 8.2E-38 2.8E-42 329.6 37.7 380 130-519 53-436 (461)
2 2ca6_A RAN GTPase-activating p 100.0 6.7E-38 2.3E-42 322.7 28.7 291 226-520 31-342 (386)
3 1z7x_W Ribonuclease inhibitor; 100.0 2.8E-36 9.5E-41 317.9 36.8 280 227-508 113-397 (461)
4 2ca6_A RAN GTPase-activating p 100.0 2.2E-35 7.6E-40 303.8 28.7 324 136-481 2-333 (386)
5 3goz_A Leucine-rich repeat-con 100.0 2.4E-31 8.1E-36 271.3 18.8 280 227-507 22-310 (362)
6 3goz_A Leucine-rich repeat-con 100.0 5.2E-30 1.8E-34 261.4 16.9 299 170-479 3-310 (362)
7 2p1m_B Transport inhibitor res 99.9 3.1E-23 1.1E-27 225.2 24.3 226 255-508 289-533 (594)
8 3ogk_B Coronatine-insensitive 99.9 3.3E-23 1.1E-27 225.0 24.1 153 337-506 376-538 (592)
9 3ogk_B Coronatine-insensitive 99.9 4.3E-23 1.5E-27 224.1 22.0 335 134-506 139-513 (592)
10 4fmz_A Internalin; leucine ric 99.9 1.7E-23 5.9E-28 211.7 15.7 281 132-494 65-346 (347)
11 3v47_A TOLL-like receptor 5B a 99.9 7.9E-26 2.7E-30 237.6 -1.6 327 133-508 30-424 (455)
12 4fmz_A Internalin; leucine ric 99.9 1.8E-23 6.2E-28 211.5 14.9 284 132-496 43-326 (347)
13 3un9_A NLR family member X1; l 99.9 1.2E-22 4.2E-27 206.6 20.6 212 283-499 72-288 (372)
14 2p1m_B Transport inhibitor res 99.9 1.3E-22 4.6E-27 220.2 20.6 334 130-506 102-506 (594)
15 3un9_A NLR family member X1; l 99.9 4.3E-22 1.5E-26 202.6 22.6 218 255-478 72-294 (372)
16 3v47_A TOLL-like receptor 5B a 99.9 1.1E-24 3.6E-29 229.0 -0.2 289 165-495 30-385 (455)
17 2id5_A Lingo-1, leucine rich r 99.9 1.2E-24 4E-29 230.1 -2.5 303 133-495 32-334 (477)
18 2z80_A TOLL-like receptor 2, v 99.9 6.2E-24 2.1E-28 215.6 2.7 296 164-509 30-331 (353)
19 3o6n_A APL1; leucine-rich repe 99.9 8.1E-24 2.8E-28 217.7 2.3 286 165-508 69-366 (390)
20 3rgz_A Protein brassinosteroid 99.9 5.7E-25 2E-29 245.9 -8.8 235 227-494 418-717 (768)
21 3rgz_A Protein brassinosteroid 99.9 2.8E-25 9.6E-30 248.4 -11.6 317 127-496 312-695 (768)
22 1o6v_A Internalin A; bacterial 99.9 2.5E-22 8.5E-27 211.6 11.3 191 254-494 176-366 (466)
23 2z7x_B TOLL-like receptor 1, v 99.9 2.4E-23 8.3E-28 222.5 3.0 173 309-508 322-497 (520)
24 1o6v_A Internalin A; bacterial 99.9 4.6E-22 1.6E-26 209.6 12.4 281 131-496 66-346 (466)
25 3oja_B Anopheles plasmodium-re 99.9 1.9E-23 6.4E-28 227.0 0.6 281 165-503 75-367 (597)
26 2ast_B S-phase kinase-associat 99.9 1E-20 3.4E-25 190.4 19.7 238 194-473 47-291 (336)
27 2ast_B S-phase kinase-associat 99.9 1.9E-20 6.3E-25 188.4 20.4 255 165-468 47-308 (336)
28 2id5_A Lingo-1, leucine rich r 99.9 7.4E-24 2.5E-28 224.0 -5.8 280 165-496 32-311 (477)
29 3t6q_A CD180 antigen; protein- 99.9 9.6E-24 3.3E-28 229.9 -5.2 136 280-436 275-412 (606)
30 3o6n_A APL1; leucine-rich repe 99.8 6.7E-23 2.3E-27 210.9 1.0 275 165-496 45-333 (390)
31 4ecn_A Leucine-rich repeat pro 99.8 1.3E-22 4.4E-27 226.5 2.7 161 131-324 489-657 (876)
32 4ecn_A Leucine-rich repeat pro 99.8 1E-22 3.6E-27 227.3 0.9 259 194-495 491-767 (876)
33 1xku_A Decorin; proteoglycan, 99.8 2.8E-23 9.6E-28 208.7 -3.8 278 165-492 52-330 (330)
34 1xku_A Decorin; proteoglycan, 99.8 3.9E-23 1.3E-27 207.6 -2.8 276 165-496 31-308 (330)
35 4eco_A Uncharacterized protein 99.8 1.7E-23 5.7E-28 228.9 -6.3 296 160-494 202-526 (636)
36 3oja_B Anopheles plasmodium-re 99.8 9E-23 3.1E-27 221.7 -0.9 276 165-497 51-340 (597)
37 4eco_A Uncharacterized protein 99.8 7.2E-23 2.5E-27 223.8 -2.9 311 131-505 247-611 (636)
38 3t6q_A CD180 antigen; protein- 99.8 5.1E-23 1.7E-27 224.2 -5.4 165 308-495 275-439 (606)
39 2z81_A CD282 antigen, TOLL-lik 99.8 6.7E-21 2.3E-25 204.9 9.3 136 133-297 26-162 (549)
40 3vq2_A TLR4, TOLL-like recepto 99.8 1.8E-22 6.2E-27 219.8 -3.1 100 395-508 472-573 (606)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.9E-21 1.3E-25 207.3 7.2 142 336-495 350-511 (562)
42 2z81_A CD282 antigen, TOLL-lik 99.8 1.9E-20 6.3E-25 201.4 12.1 191 283-508 334-526 (549)
43 2ft3_A Biglycan; proteoglycan, 99.8 3.6E-23 1.2E-27 208.1 -9.2 271 166-494 34-307 (332)
44 2z7x_B TOLL-like receptor 1, v 99.8 1.7E-21 5.9E-26 208.1 3.3 317 133-496 21-414 (520)
45 3vq2_A TLR4, TOLL-like recepto 99.8 1.1E-22 3.8E-27 221.6 -6.1 188 280-495 347-535 (606)
46 1ziw_A TOLL-like receptor 3; i 99.8 7.9E-22 2.7E-26 217.8 -1.0 186 133-354 25-210 (680)
47 1io0_A Tropomodulin; LRR prote 99.8 3.5E-19 1.2E-23 162.9 16.3 150 356-509 25-177 (185)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2E-21 7E-26 209.6 1.2 159 281-467 351-511 (562)
49 2z63_A TOLL-like receptor 4, v 99.8 1.7E-22 6E-27 218.2 -7.4 115 363-495 417-532 (570)
50 2ft3_A Biglycan; proteoglycan, 99.8 7.3E-23 2.5E-27 205.9 -10.2 297 134-492 34-331 (332)
51 3o53_A Protein LRIM1, AGAP0063 99.8 7.2E-22 2.5E-26 197.2 -4.9 260 165-489 10-270 (317)
52 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-20 6.3E-25 196.3 5.6 63 423-495 285-353 (457)
53 2z80_A TOLL-like receptor 2, v 99.8 4.5E-21 1.5E-25 194.4 0.9 257 194-495 31-291 (353)
54 1ogq_A PGIP-2, polygalacturona 99.8 3.6E-23 1.2E-27 206.2 -14.5 225 227-492 76-302 (313)
55 4glp_A Monocyte differentiatio 99.8 5.9E-21 2E-25 190.0 0.9 247 227-497 64-310 (310)
56 1io0_A Tropomodulin; LRR prote 99.8 1.2E-18 4.2E-23 159.3 15.1 150 329-482 26-178 (185)
57 1wwl_A Monocyte differentiatio 99.8 9.6E-21 3.3E-25 188.6 1.0 214 254-496 94-311 (312)
58 3j0a_A TOLL-like receptor 5; m 99.8 2.9E-22 1E-26 226.2 -11.3 138 133-297 24-162 (844)
59 1ziw_A TOLL-like receptor 3; i 99.8 4.9E-21 1.7E-25 211.4 -1.4 277 136-466 7-285 (680)
60 2z66_A Variable lymphocyte rec 99.8 5.4E-22 1.9E-26 197.1 -8.8 197 283-508 78-276 (306)
61 3o53_A Protein LRIM1, AGAP0063 99.8 9E-21 3.1E-25 189.2 -0.2 223 227-500 34-256 (317)
62 2z63_A TOLL-like receptor 4, v 99.8 5.3E-22 1.8E-26 214.4 -10.1 144 337-495 345-508 (570)
63 3j0a_A TOLL-like receptor 5; m 99.8 5.5E-22 1.9E-26 224.0 -11.2 307 136-495 7-376 (844)
64 2z66_A Variable lymphocyte rec 99.8 8.4E-22 2.9E-26 195.7 -8.7 267 166-482 8-278 (306)
65 3g06_A SSPH2 (leucine-rich rep 99.8 5.2E-19 1.8E-23 191.1 12.2 270 134-507 41-310 (622)
66 1ogq_A PGIP-2, polygalacturona 99.8 8.7E-22 3E-26 196.2 -9.2 229 227-495 50-282 (313)
67 4fcg_A Uncharacterized protein 99.8 9.8E-21 3.4E-25 189.8 -2.2 133 338-494 182-314 (328)
68 1pgv_A TMD-1, tropomodulin TMD 99.8 5.4E-18 1.8E-22 153.8 14.1 151 357-511 31-185 (197)
69 3oja_A Leucine-rich immune mol 99.8 7.6E-20 2.6E-24 193.3 1.1 236 194-489 34-270 (487)
70 3oja_A Leucine-rich immune mol 99.8 3.1E-20 1.1E-24 196.3 -2.8 244 157-461 26-270 (487)
71 4glp_A Monocyte differentiatio 99.7 1.9E-19 6.6E-24 179.0 2.8 244 165-467 64-308 (310)
72 3zyj_A Leucine-rich repeat-con 99.7 3.1E-20 1.1E-24 194.0 -3.6 226 228-494 65-292 (440)
73 1wwl_A Monocyte differentiatio 99.7 2.9E-20 1E-24 185.1 -3.9 263 165-468 43-311 (312)
74 3zyi_A Leucine-rich repeat-con 99.7 4.2E-20 1.4E-24 193.8 -3.1 226 228-494 76-303 (452)
75 4fcg_A Uncharacterized protein 99.7 1E-19 3.5E-24 182.4 -0.6 132 310-465 182-313 (328)
76 3zyi_A Leucine-rich repeat-con 99.7 5.3E-20 1.8E-24 193.0 -3.0 245 167-465 56-302 (452)
77 3zyj_A Leucine-rich repeat-con 99.7 4.8E-20 1.6E-24 192.6 -3.3 259 167-479 45-306 (440)
78 1ozn_A Reticulon 4 receptor; N 99.7 9.4E-20 3.2E-24 178.9 -1.3 87 395-494 152-238 (285)
79 1ozn_A Reticulon 4 receptor; N 99.7 1.8E-19 6.2E-24 176.9 -0.0 237 196-479 13-252 (285)
80 3bz5_A Internalin-J, INLJ; leu 99.7 5.5E-18 1.9E-22 177.5 10.1 250 165-493 42-298 (457)
81 1h6u_A Internalin H; cell adhe 99.7 5.5E-18 1.9E-22 168.2 8.7 170 282-495 62-231 (308)
82 1h6u_A Internalin H; cell adhe 99.7 1.5E-17 5.2E-22 165.0 8.7 190 228-467 42-231 (308)
83 1pgv_A TMD-1, tropomodulin TMD 99.7 1.1E-16 3.8E-21 145.2 13.5 147 331-481 33-183 (197)
84 3g06_A SSPH2 (leucine-rich rep 99.7 2.4E-17 8E-22 178.2 10.0 263 133-492 61-326 (622)
85 1jl5_A Outer protein YOPM; leu 99.7 5.3E-18 1.8E-22 177.5 4.6 94 367-495 277-371 (454)
86 4g8a_A TOLL-like receptor 4; l 99.7 8.3E-19 2.8E-23 191.6 -1.7 136 133-297 52-187 (635)
87 1jl5_A Outer protein YOPM; leu 99.7 6.9E-18 2.4E-22 176.6 5.2 122 339-496 277-411 (454)
88 2z62_A TOLL-like receptor 4, v 99.6 7.7E-18 2.6E-22 164.4 -0.9 179 307-508 72-253 (276)
89 1p9a_G Platelet glycoprotein I 99.6 1.1E-17 3.8E-22 164.5 0.1 214 227-481 10-224 (290)
90 1p9a_G Platelet glycoprotein I 99.6 3.2E-17 1.1E-21 161.2 -0.5 190 227-449 31-221 (290)
91 3rfs_A Internalin B, repeat mo 99.6 2E-17 6.7E-22 161.2 -2.1 157 282-466 62-218 (272)
92 2z62_A TOLL-like receptor 4, v 99.6 6.5E-18 2.2E-22 164.9 -5.8 140 308-466 97-237 (276)
93 2o6q_A Variable lymphocyte rec 99.6 4.8E-17 1.6E-21 158.2 -0.4 174 307-506 57-232 (270)
94 4g8a_A TOLL-like receptor 4; l 99.6 2.1E-17 7.1E-22 180.4 -3.3 136 165-325 52-187 (635)
95 3rfs_A Internalin B, repeat mo 99.6 5.7E-17 1.9E-21 157.9 -0.5 195 227-467 41-236 (272)
96 1h6t_A Internalin B; cell adhe 99.6 1.3E-15 4.4E-20 149.8 8.0 169 255-495 46-214 (291)
97 4ezg_A Putative uncharacterize 99.6 3.6E-16 1.2E-20 144.5 3.4 150 283-494 44-194 (197)
98 1h6t_A Internalin B; cell adhe 99.6 7.5E-16 2.6E-20 151.5 5.8 169 227-438 46-214 (291)
99 2o6q_A Variable lymphocyte rec 99.6 1.1E-16 3.7E-21 155.8 -0.4 180 256-466 38-218 (270)
100 2ra8_A Uncharacterized protein 99.6 3E-15 1E-19 150.9 9.4 160 333-505 166-331 (362)
101 3m19_A Variable lymphocyte rec 99.6 3.4E-16 1.2E-20 150.5 -0.1 173 312-510 36-210 (251)
102 4ezg_A Putative uncharacterize 99.5 3.1E-15 1.1E-19 138.1 6.0 151 255-438 44-195 (197)
103 2ra8_A Uncharacterized protein 99.5 8.3E-15 2.8E-19 147.7 8.5 226 227-492 107-341 (362)
104 1m9s_A Internalin B; cell inva 99.5 5.3E-15 1.8E-19 159.5 6.6 169 255-467 43-211 (605)
105 3cvr_A Invasion plasmid antige 99.5 2.9E-15 1E-19 159.9 4.5 192 227-474 59-251 (571)
106 1m9s_A Internalin B; cell inva 99.5 4.8E-15 1.7E-19 159.8 5.2 170 227-439 43-212 (605)
107 1xeu_A Internalin C; cellular 99.5 3.5E-15 1.2E-19 144.4 1.0 150 308-496 38-187 (263)
108 3cvr_A Invasion plasmid antige 99.5 9.2E-15 3.1E-19 156.1 4.1 194 194-446 59-252 (571)
109 2xwt_C Thyrotropin receptor; s 99.5 7.7E-16 2.6E-20 146.8 -5.9 149 282-463 79-236 (239)
110 3m19_A Variable lymphocyte rec 99.5 1.2E-14 4E-19 139.7 1.9 150 307-478 55-206 (251)
111 2xwt_C Thyrotropin receptor; s 99.4 6.8E-16 2.3E-20 147.2 -7.1 197 255-492 31-237 (239)
112 1xeu_A Internalin C; cellular 99.4 1.8E-14 6.2E-19 139.3 1.0 144 255-436 41-184 (263)
113 1dce_A Protein (RAB geranylger 99.3 1.4E-14 4.7E-19 155.3 -6.4 104 312-437 442-546 (567)
114 3e6j_A Variable lymphocyte rec 99.3 1.7E-13 5.8E-18 129.6 0.5 155 339-516 40-196 (229)
115 2xot_A Amphoterin-induced prot 99.3 1.5E-13 5.1E-18 139.4 -1.3 90 395-494 111-202 (361)
116 4b8c_D Glucose-repressible alc 99.3 1.2E-13 4.1E-18 152.6 -3.0 118 249-386 218-335 (727)
117 4b8c_D Glucose-repressible alc 99.3 2.6E-13 8.9E-18 149.9 -1.4 183 277-494 218-404 (727)
118 2o6s_A Variable lymphocyte rec 99.2 1.5E-13 5.1E-18 127.9 -4.2 13 284-296 29-41 (208)
119 2v9t_B SLIT homolog 2 protein 99.2 5.2E-13 1.8E-17 125.4 -0.7 41 336-380 53-93 (220)
120 2v9t_B SLIT homolog 2 protein 99.2 4.3E-13 1.5E-17 126.0 -1.7 166 314-508 14-180 (220)
121 2o6s_A Variable lymphocyte rec 99.2 4.1E-13 1.4E-17 124.9 -1.8 38 255-296 28-65 (208)
122 1dce_A Protein (RAB geranylger 99.2 2.5E-13 8.7E-18 145.5 -3.8 125 284-431 442-567 (567)
123 2v70_A SLIT-2, SLIT homolog 2 99.2 4.4E-13 1.5E-17 125.9 -1.7 87 395-494 80-166 (220)
124 2xot_A Amphoterin-induced prot 99.2 1.5E-12 5.2E-17 131.9 1.7 178 229-436 20-201 (361)
125 3e6j_A Variable lymphocyte rec 99.2 1.6E-12 5.4E-17 122.9 0.8 131 228-380 41-172 (229)
126 2je0_A Acidic leucine-rich nuc 99.2 5.7E-12 1.9E-16 110.4 4.2 132 227-375 17-148 (149)
127 2je0_A Acidic leucine-rich nuc 99.2 5.6E-12 1.9E-16 110.5 4.2 42 336-381 61-102 (149)
128 2v70_A SLIT-2, SLIT homolog 2 99.2 1.1E-12 3.6E-17 123.3 -0.7 114 335-466 53-166 (220)
129 2ell_A Acidic leucine-rich nuc 99.2 2.7E-12 9.4E-17 114.9 2.0 136 227-379 24-159 (168)
130 2ell_A Acidic leucine-rich nuc 99.2 5.6E-12 1.9E-16 112.9 4.0 138 338-494 23-160 (168)
131 1ds9_A Outer arm dynein; leuci 99.2 4.2E-13 1.4E-17 123.9 -5.1 142 331-496 40-187 (198)
132 1a9n_A U2A', U2A'; complex (nu 99.1 1.8E-11 6.1E-16 110.6 2.2 132 227-380 19-153 (176)
133 1ds9_A Outer arm dynein; leuci 99.1 1.1E-12 3.7E-17 121.0 -6.4 8 423-430 173-180 (198)
134 1a9n_A U2A', U2A'; complex (nu 99.1 2.8E-11 9.5E-16 109.2 2.6 35 312-352 43-77 (176)
135 3e4g_A ATP synthase subunit S, 99.1 1.3E-10 4.4E-15 103.3 5.8 104 396-508 61-169 (176)
136 4ay9_X Follicle-stimulating ho 99.1 1.7E-12 5.8E-17 131.0 -7.4 238 168-463 12-256 (350)
137 4ay9_X Follicle-stimulating ho 99.0 1.8E-12 6.2E-17 130.8 -8.3 240 196-491 11-256 (350)
138 1w8a_A SLIT protein; signaling 98.9 4.4E-11 1.5E-15 109.6 -1.6 41 336-380 51-91 (192)
139 1w8a_A SLIT protein; signaling 98.9 7E-11 2.4E-15 108.3 -1.8 40 451-494 100-139 (192)
140 2wfh_A SLIT homolog 2 protein 98.9 1.3E-10 4.6E-15 106.5 0.1 14 452-465 125-138 (193)
141 2wfh_A SLIT homolog 2 protein 98.9 1.5E-10 5E-15 106.2 -0.1 74 424-506 78-152 (193)
142 3e4g_A ATP synthase subunit S, 98.9 1.2E-09 4.1E-14 97.1 4.8 93 367-469 61-156 (176)
143 2o6r_A Variable lymphocyte rec 98.9 4E-10 1.4E-14 101.6 1.2 125 367-509 28-154 (177)
144 3sb4_A Hypothetical leucine ri 98.8 1.2E-10 4.2E-15 116.2 -5.4 38 194-240 25-62 (329)
145 2o6r_A Variable lymphocyte rec 98.8 7.5E-10 2.6E-14 99.8 0.0 14 452-465 123-136 (177)
146 3sb4_A Hypothetical leucine ri 98.7 2.5E-09 8.6E-14 106.6 0.1 86 395-495 225-311 (329)
147 3g39_A Variable lymphocyte rec 98.6 4.9E-09 1.7E-13 93.8 0.5 104 396-512 30-135 (170)
148 3g39_A Variable lymphocyte rec 98.5 9.3E-09 3.2E-13 92.0 0.1 104 367-484 30-135 (170)
149 2r9u_A Variable lymphocyte rec 98.5 1.4E-08 4.6E-13 91.3 0.9 105 396-513 33-139 (174)
150 2r9u_A Variable lymphocyte rec 98.5 2.3E-08 7.7E-13 89.8 0.5 14 452-465 104-117 (174)
151 4fdw_A Leucine rich hypothetic 98.2 5.8E-08 2E-12 99.3 -4.5 202 227-466 157-358 (401)
152 2ifg_A High affinity nerve gro 98.1 6.2E-07 2.1E-11 89.8 2.1 66 279-353 27-94 (347)
153 4fdw_A Leucine rich hypothetic 98.1 3.1E-08 1.1E-12 101.3 -8.7 223 227-494 135-358 (401)
154 3rw6_A Nuclear RNA export fact 98.1 4.1E-06 1.4E-10 79.9 6.5 89 393-488 167-258 (267)
155 2ifg_A High affinity nerve gro 98.1 1.1E-06 3.7E-11 88.0 2.4 105 230-353 11-117 (347)
156 3rw6_A Nuclear RNA export fact 97.9 9.7E-06 3.3E-10 77.3 5.4 42 282-325 169-210 (267)
157 4fs7_A Uncharacterized protein 95.9 0.00059 2E-08 69.2 -2.6 127 336-491 250-376 (394)
158 4gt6_A Cell surface protein; l 93.3 0.024 8.4E-07 57.2 1.6 131 334-493 260-390 (394)
159 4fs7_A Uncharacterized protein 92.7 0.0036 1.2E-07 63.4 -5.7 106 362-491 248-353 (394)
160 4gt6_A Cell surface protein; l 90.3 0.15 5.1E-06 51.3 3.4 130 307-465 261-390 (394)
161 3rfe_A Platelet glycoprotein I 87.0 0.31 1.1E-05 40.4 2.6 51 454-508 32-83 (130)
162 3rfe_A Platelet glycoprotein I 83.2 0.39 1.3E-05 39.8 1.4 17 194-210 31-47 (130)
163 4h09_A Hypothetical leucine ri 80.4 0.11 3.8E-06 51.8 -3.6 130 336-491 214-343 (379)
164 4h09_A Hypothetical leucine ri 74.8 0.64 2.2E-05 46.2 0.1 152 281-463 192-343 (379)
165 2byk_A Chrac-16; nucleosome sl 31.6 9.9 0.00034 31.6 0.0 15 471-485 77-91 (140)
166 1kdx_A CBP; complex (transcrip 21.9 1E+02 0.0035 22.7 3.9 48 20-72 10-61 (81)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=8.2e-38 Score=329.64 Aligned_cols=380 Identities=19% Similarity=0.296 Sum_probs=332.9
Q ss_pred cccCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCc
Q 008809 130 VSTADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRP 209 (552)
Q Consensus 130 ~~~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~ 209 (552)
...+.++++|+++.. ++...+..+...+....+++++|++++|.++..++..+...+.. .++|++|+|++|.++..
T Consensus 53 ~~~~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 53 RVNPALAELNLRSNE---LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT-LPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HTCTTCCEEECTTCC---CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTS-CTTCCEEECCSSBCHHH
T ss_pred HhCCCcCEEeCCCCc---CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHcc-CCceeEEECCCCcCchH
Confidence 344678999999865 44566667777776654589999999999998887777777766 47999999999988654
Q ss_pred hHHHHHHHHHHHHHhc--CCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcC-CCCCcc
Q 008809 210 EAEALEVMAIFSAALE--GSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIP-STEKLR 286 (552)
Q Consensus 210 ~~~~l~~l~~~~~~l~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~ 286 (552)
.... +...+. .++|++|+|++|.++..++..++..+..+++|++|++++|.+++.+...+...+. ..++|+
T Consensus 129 ~~~~------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 129 GLQL------LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp HHHH------HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHH------HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 3332 222222 3589999999999999999999999999999999999999999988888887664 356999
Q ss_pred EEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhh-cCCCCCEEecCCCCCChHHHHHHHHHHcc
Q 008809 287 VLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALE-SCTHLKKLDLRDNMFGVEAGVALSKALSN 365 (552)
Q Consensus 287 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~ 365 (552)
+|++++|.++..++..++..+..+++|++|++++|.+++.+...++..+. .+++|+.|++++|.++..++..++..+..
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 282 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999888887776 57899999999999999999999999999
Q ss_pred CCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHH
Q 008809 366 YADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQIS 445 (552)
Q Consensus 366 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~ 445 (552)
+++|++|++++|.+++.++..++..+..+.++|++|++++|.++..+...++..+..+++|++|+|++|.+++.|+..++
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 99999999999999999999999988777789999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhcCccccccccccC
Q 008809 446 KALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNSPDMLESLEEND 519 (552)
Q Consensus 446 ~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~~~l~~l~~~~ 519 (552)
+++...+++|++|++++|.|++.|+..++.++..+++|+.|++++|+|++.|+..+.+.+++....+..+...+
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~ 436 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecc
Confidence 99884488999999999999999999999999999999999999999999999999999998766666665443
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=6.7e-38 Score=322.71 Aligned_cols=291 Identities=21% Similarity=0.289 Sum_probs=261.3
Q ss_pred CCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCC------HHHHHHHHHhcCCCCCccEEEcccCCCChHH
Q 008809 226 GSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGIS------KEAARAVCELIPSTEKLRVLQFHNNMTGDEG 299 (552)
Q Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g 299 (552)
.++|++|+|++|.++..++..++..+..+++|+.|+|++|.+. ..+...+...+..+++|++|+|++|.++..|
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3789999999999999999999999999999999999997654 3566778888889999999999999999999
Q ss_pred HHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcC---------CCCCEEecCCCCCChHHHHHHHHHHccCCccc
Q 008809 300 AQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESC---------THLKKLDLRDNMFGVEAGVALSKALSNYADLT 370 (552)
Q Consensus 300 ~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~---------~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~ 370 (552)
+..++..+..+++|++|++++|.++..+...++..+..+ ++|++|++++|.++..++..+...+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 999999999999999999999999988888888888887 99999999999999888888889999999999
Q ss_pred EEecCCCCCCchHHHHHHH-HHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHh
Q 008809 371 EVYLSYLNLEDDGTVAITN-ALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALE 449 (552)
Q Consensus 371 ~L~L~~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~ 449 (552)
.|++++|.+++.++..+.. .+.. +++|++|+|++|.+++.+...++..+..+++|++|+|++|.|++.|+..++.++.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 9999999999998888777 5544 7999999999999998888899999999999999999999999999999999996
Q ss_pred hC--CCCccEEEccCCCCCHHHHHHHHHHH-hcCCCccEEEecCCCCCHHH--HHHHHHHHhcCccccccccccCC
Q 008809 450 QG--HDQLKVVDMSSNFIRRAGARQLAQVV-IQKPGFKQLNIDANIISEEG--IDEVKEIFKNSPDMLESLEENDP 520 (552)
Q Consensus 450 ~~--~~~L~~L~Ls~n~i~~~g~~~l~~~l-~~~~~L~~L~L~~N~i~~~g--~~~l~~~l~~~~~~l~~l~~~~~ 520 (552)
. +++|+.|+|++|.|++.|+..++..+ ..+++|+.|++++|+|++.+ +..+.+.++... +..++++++
T Consensus 270 -~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~--~~~l~~~d~ 342 (386)
T 2ca6_A 270 -KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG--RGELDELDD 342 (386)
T ss_dssp -TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT--CCEECCCCS
T ss_pred -hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC--cchhhhccc
Confidence 4 89999999999999999999999988 55899999999999999988 789999888764 334444443
No 3
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.8e-36 Score=317.94 Aligned_cols=280 Identities=21% Similarity=0.279 Sum_probs=144.6
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhc-CCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLES-QSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD 305 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 305 (552)
++|++|+|++|.+++.++..++..+.. .++|++|++++|.+++..+..+...+..+++|++|++++|.+++.+...++.
T Consensus 113 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 192 (461)
T 1z7x_W 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ 192 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH
Confidence 344445555444444444444443322 2344455555444444444444444444445555555555554444444444
Q ss_pred Hhh-cCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHc-cCCcccEEecCCCCCCchH
Q 008809 306 VVK-HSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALS-NYADLTEVYLSYLNLEDDG 383 (552)
Q Consensus 306 ~l~-~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~-~~~~L~~L~L~~n~l~~~~ 383 (552)
.+. ..++|+.|++++|.++..++..++..+..+++|++|++++|.++..+...+...+. .+++|+.|++++|.+++.+
T Consensus 193 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence 333 23345555555555555444445555555555555555555555444444444332 3455555555555555555
Q ss_pred HHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcC-CCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccC
Q 008809 384 TVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAK-QHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSS 462 (552)
Q Consensus 384 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~ 462 (552)
+..++..+.. +++|++|++++|.+++.++..++..+..+ ++|+.|+|++|.+++.++..++..+. .+++|++|++++
T Consensus 273 ~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 273 CGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA-QNRFLLELQISN 350 (461)
T ss_dssp HHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-HCSSCCEEECCS
T ss_pred HHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh-hCCCccEEEccC
Confidence 4444444433 34555555555555554444454444333 35555555555555555555555555 556666666666
Q ss_pred CCCCHHHHHHHHHHHhc-CCCccEEEecCCCCCHHHHHHHHHHHhcC
Q 008809 463 NFIRRAGARQLAQVVIQ-KPGFKQLNIDANIISEEGIDEVKEIFKNS 508 (552)
Q Consensus 463 n~i~~~g~~~l~~~l~~-~~~L~~L~L~~N~i~~~g~~~l~~~l~~~ 508 (552)
|.|++.++..+++++.. +++|+.|+|++|.|++.|+..+...+..+
T Consensus 351 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 66666666666665554 45666666666666666666666666654
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=2.2e-35 Score=303.84 Aligned_cols=324 Identities=22% Similarity=0.311 Sum_probs=205.1
Q ss_pred cEeecccCccccc--cHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHH
Q 008809 136 TLFDISKGQRAFI--EAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEA 213 (552)
Q Consensus 136 ~~ldl~~~~~~~~--~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~ 213 (552)
..|+++++...+. +...+..++..+... ++++.|+|++|.++..++..++..+.. .++|++|+|++|.++......
T Consensus 2 ~~~s~~~~~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~~~~~~l~~~~ 79 (386)
T 2ca6_A 2 ARFSIEGKSLKLDAITTEDEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEI 79 (386)
T ss_dssp CEEECTTCCCEESSCCSHHHHTTSHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGGS
T ss_pred ceEEecCcccccCCCCHHHHHHHHHHHhcC-CCccEEECCCCCCCHHHHHHHHHHHHh-CCCccEEeCcccccCccccch
Confidence 3577777777666 788888888888776 889999999999998888777776655 468888888887665543322
Q ss_pred HHHHHHHHHHhc-CCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEccc
Q 008809 214 LEVMAIFSAALE-GSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHN 292 (552)
Q Consensus 214 l~~l~~~~~~l~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 292 (552)
...+..+...+. .++|++|+|++|.++..++..++..+..+++|++|+|++|.+++.++..+...+..+. .
T Consensus 80 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~--------~ 151 (386)
T 2ca6_A 80 PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA--------V 151 (386)
T ss_dssp HHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH--------H
T ss_pred hHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh--------h
Confidence 233333333332 4566666666666666666666666666666666666666665555555544433330 0
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHH-HHccCCcccE
Q 008809 293 NMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSK-ALSNYADLTE 371 (552)
Q Consensus 293 n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~-~l~~~~~L~~ 371 (552)
+ ..-...++|++|++++|+++..++..++..+..+++|+.|++++|.++..++..+.. .+..+++|+.
T Consensus 152 ~-----------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~ 220 (386)
T 2ca6_A 152 N-----------KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220 (386)
T ss_dssp H-----------HHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE
T ss_pred h-----------hhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccE
Confidence 0 000000555555555555555455445555555555555555555555555544444 5555666666
Q ss_pred EecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhc--CCCcCEEEccCCCCCchHHHHHHHHHh
Q 008809 372 VYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAA--KQHLTKLNLAENELKDDGAIQISKALE 449 (552)
Q Consensus 372 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~d~g~~~l~~~L~ 449 (552)
|+|++|.+++.+...++..+.. +++|++|+|++|.++..++..++..+.. +++|+.|+|++|.|++.|+..++..+.
T Consensus 221 L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 221 LDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred EECcCCCCCcHHHHHHHHHHcc-CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 6666666665555555555543 4666666666666666666666666644 678888888888888888888888774
Q ss_pred hCCCCccEEEccCCCCCHHH--HHHHHHHHhcCC
Q 008809 450 QGHDQLKVVDMSSNFIRRAG--ARQLAQVVIQKP 481 (552)
Q Consensus 450 ~~~~~L~~L~Ls~n~i~~~g--~~~l~~~l~~~~ 481 (552)
..+++|+.|++++|.++..+ +..+...+..++
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred hcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 35788888888888888776 466666655443
No 5
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=2.4e-31 Score=271.27 Aligned_cols=280 Identities=13% Similarity=0.199 Sum_probs=208.4
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCC-CccEEEeeCCCCCHHHHHHHHHhcCCC-CCccEEEcccCCCChHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQS-SLEELYLMNDGISKEAARAVCELIPST-EKLRVLQFHNNMTGDEGAQAIS 304 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~ 304 (552)
.+|++|+|++|.+++.+...++..+..++ +|++|+|++|.|++..+..+..++... ++|++|+|++|.+++.+...+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 34777777777777777767777777666 677777777777776666777666554 7777888888777777777777
Q ss_pred HHhhcC-CCccEEEeeCCCCChHHHHHHHHHhhc-CCCCCEEecCCCCCChHHHHHHHHHHccCC-cccEEecCCCCCCc
Q 008809 305 DVVKHS-PLLEDFRCSSTRIGSEGGTALSEALES-CTHLKKLDLRDNMFGVEAGVALSKALSNYA-DLTEVYLSYLNLED 381 (552)
Q Consensus 305 ~~l~~~-~~L~~L~ls~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~-~L~~L~L~~n~l~~ 381 (552)
..+..+ ++|+.|++++|+++..+...+...+.. +++|++|+|++|.++..+...++..+..++ +|++|+|++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 777776 678888888888777777777777766 357888888888877777777777777665 78888888888877
Q ss_pred hHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhc-CCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEc
Q 008809 382 DGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAA-KQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDM 460 (552)
Q Consensus 382 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~L 460 (552)
.+...++..+....++|++|+|++|.+++.++..++..+.. +++|++|+|++|.|++.|+..++..+. .+++|+.|+|
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~-~l~~L~~L~L 260 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD-SLKHLQTVYL 260 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT-TTTTCSEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh-cCCCccEEEe
Confidence 77777777666532478888888888877777777777766 357888888888888877777776556 7778888888
Q ss_pred cCCC---CCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhc
Q 008809 461 SSNF---IRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKN 507 (552)
Q Consensus 461 s~n~---i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 507 (552)
++|. ++..++..++..+..+++|+.|++++|+|.+.+...+.+.++.
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHH
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHHH
Confidence 8886 7777777777777777778888888888887766666666553
No 6
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=5.2e-30 Score=261.36 Aligned_cols=299 Identities=16% Similarity=0.162 Sum_probs=244.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCC-CccEEEcCCCCCCHHHHHHHH
Q 008809 170 ICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGS-VLKSLNLSDNALGEKGVRAFG 248 (552)
Q Consensus 170 L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~-~L~~L~Ls~n~l~~~~~~~l~ 248 (552)
+.++.|.++.....+ ...+.+|++|+|++|.++......+. ......+ +|++|+|++|.++..+...++
T Consensus 3 ~~ls~n~~~~~~~~~-----~~~~~~L~~L~Ls~n~l~~~~~~~l~-----~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 72 (362)
T 3goz_A 3 YKLTLHPGSNPVEEF-----TSIPHGVTSLDLSLNNLYSISTVELI-----QAFANTPASVTSLNLSGNSLGFKNSDELV 72 (362)
T ss_dssp EECCCCTTCCHHHHH-----HTSCTTCCEEECTTSCGGGSCHHHHH-----HHHHTCCTTCCEEECCSSCGGGSCHHHHH
T ss_pred cccccccchHHHHHH-----HhCCCCceEEEccCCCCChHHHHHHH-----HHHHhCCCceeEEECcCCCCCHHHHHHHH
Confidence 566777776433222 22245688888888888766543221 1111225 799999999999988888888
Q ss_pred HHHhcC-CCccEEEeeCCCCCHHHHHHHHHhcCCC-CCccEEEcccCCCChHHHHHHHHHhhcC-CCccEEEeeCCCCCh
Q 008809 249 ALLESQ-SSLEELYLMNDGISKEAARAVCELIPST-EKLRVLQFHNNMTGDEGAQAISDVVKHS-PLLEDFRCSSTRIGS 325 (552)
Q Consensus 249 ~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~-~~L~~L~ls~n~l~~ 325 (552)
.++... ++|++|+|++|.+++..+..++..+..+ ++|++|+|++|.+++.+...+...+..+ ++|++|++++|.+++
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 888877 8899999999999888888888887776 7999999999999888888888888874 699999999999998
Q ss_pred HHHHHHHHHhhcCC-CCCEEecCCCCCChHHHHHHHHHHccCC-cccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEc
Q 008809 326 EGGTALSEALESCT-HLKKLDLRDNMFGVEAGVALSKALSNYA-DLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLEL 403 (552)
Q Consensus 326 ~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~L~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L 403 (552)
.+...++..+..++ +|+.|+|++|.++..+...+...+..++ +|+.|+|++|.+++.++..++..+....++|++|+|
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 88888888888876 9999999999998888788888888884 999999999999999988888888775568999999
Q ss_pred cCCCCCcchHHHHHHHhhcCCCcCEEEccCCC---CCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhc
Q 008809 404 AGNDITVEAAPVISACVAAKQHLTKLNLAENE---LKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQ 479 (552)
Q Consensus 404 s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~ 479 (552)
++|.+++.++..++.++..+++|+.|+|++|. +++.++..+...+. .+++|+.||+++|.|.+.+...++..+..
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~-~l~~L~~LdL~~N~l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP-NIQKIILVDKNGKEIHPSHSIPISNLIRE 310 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST-TCCEEEEECTTSCBCCGGGCHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc-cCCceEEEecCCCcCCCcchHHHHHHHHH
Confidence 99999999988888888888999999999997 78888888888887 88999999999999998877777776653
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=3.1e-23 Score=225.24 Aligned_cols=226 Identities=18% Similarity=0.171 Sum_probs=152.9
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEee---------CCCCCh
Q 008809 255 SSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCS---------STRIGS 325 (552)
Q Consensus 255 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls---------~n~l~~ 325 (552)
++|++|+|++|.+++.. +...+..+++|++|++++| +++.+...+ ...+++|+.|+++ .+.+++
T Consensus 289 ~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~l---~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLEVL---ASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp TTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHHHH---HHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred CCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHHHH---HHhCCCCCEEEEecCcccccccCCCCCH
Confidence 55666666666665543 2333445566777777666 444433332 3346677777773 345666
Q ss_pred HHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecC--C----CCCC----chHHHHHHHHHhcCC
Q 008809 326 EGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLS--Y----LNLE----DDGTVAITNALKGSA 395 (552)
Q Consensus 326 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~--~----n~l~----~~~~~~l~~~l~~~~ 395 (552)
.+...++ ..+++|+.|.++.|.++..+...+. ..+++|+.|+++ + +.++ +.++..+.. .+
T Consensus 362 ~~l~~l~---~~~~~L~~L~~~~~~l~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~----~~ 431 (594)
T 2p1m_B 362 QGLVSVS---MGCPKLESVLYFCRQMTNAALITIA---RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE----HC 431 (594)
T ss_dssp HHHHHHH---HHCTTCCEEEEEESCCCHHHHHHHH---HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH----HC
T ss_pred HHHHHHH---HhchhHHHHHHhcCCcCHHHHHHHH---hhCCCcceeEeecccCCCcccccCCchhhHHHHHHh----hC
Confidence 6544433 2466777777777777765533332 346788888887 3 5666 445444432 25
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHH
Q 008809 396 PLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQ 475 (552)
Q Consensus 396 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~ 475 (552)
++|+.|++++ .+++.+...++. .+++|+.|+|++|.+++.|+..++. .+++|+.|+|++|.+++.+...++
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~~----~~~~L~~L~L~~n~~~~~~~~~~~- 502 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS----GCDSLRKLEIRDCPFGDKALLANA- 502 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHHH----HCTTCCEEEEESCSCCHHHHHHTG-
T ss_pred CCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHHh----cCCCcCEEECcCCCCcHHHHHHHH-
Confidence 7888888877 777766666654 2588999999999999988877765 578999999999999887655443
Q ss_pred HHhcCCCccEEEecCCCCCHHHHHHHHHHHhcC
Q 008809 476 VVIQKPGFKQLNIDANIISEEGIDEVKEIFKNS 508 (552)
Q Consensus 476 ~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~ 508 (552)
..+++|+.|++++|++++.|+..+...++.-
T Consensus 503 --~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 503 --SKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533 (594)
T ss_dssp --GGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred --HhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence 4578999999999999999999987666443
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=3.3e-23 Score=224.95 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=87.4
Q ss_pred cCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecC----CCCCCch----HHHHHHHHHhcCCCCccEEEccCCC-
Q 008809 337 SCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLS----YLNLEDD----GTVAITNALKGSAPLLEVLELAGND- 407 (552)
Q Consensus 337 ~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~----~n~l~~~----~~~~l~~~l~~~~~~L~~L~Ls~n~- 407 (552)
.+++|+.|+++.|.++..+...+. ..+++|+.|+++ .|.+++. ++..+.. .+++|+.|++++|.
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~----~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIG---TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI----GCKKLRRFAFYLRQG 448 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHH---HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH----HCTTCCEEEEECCGG
T ss_pred hCccCeEEEeecCCccHHHHHHHH---hhCCCCcEEEEeecCCCccccCchHHHHHHHHHH----hCCCCCEEEEecCCC
Confidence 344555555555555544322221 124455555553 3444442 3322221 24566666666543
Q ss_pred -CCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEE
Q 008809 408 -ITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQL 486 (552)
Q Consensus 408 -l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L 486 (552)
+++.+...++ ..+++|+.|+|++|.+++.++..+.. .+++|+.|+|++|.+++.++..++ ..+++|+.|
T Consensus 449 ~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L 518 (592)
T 3ogk_B 449 GLTDLGLSYIG---QYSPNVRWMLLGYVGESDEGLMEFSR----GCPNLQKLEMRGCCFSERAIAAAV---TKLPSLRYL 518 (592)
T ss_dssp GCCHHHHHHHH---HSCTTCCEEEECSCCSSHHHHHHHHT----CCTTCCEEEEESCCCBHHHHHHHH---HHCSSCCEE
T ss_pred CccHHHHHHHH---HhCccceEeeccCCCCCHHHHHHHHh----cCcccCeeeccCCCCcHHHHHHHH---HhcCccCee
Confidence 5554444443 23477777777777777766555443 667788888888877776554443 346778888
Q ss_pred EecCCCCCHHHHHHHHHHHh
Q 008809 487 NIDANIISEEGIDEVKEIFK 506 (552)
Q Consensus 487 ~L~~N~i~~~g~~~l~~~l~ 506 (552)
+|++|++++.|+..+...+.
T Consensus 519 ~ls~n~it~~~~~~l~~~~p 538 (592)
T 3ogk_B 519 WVQGYRASMTGQDLMQMARP 538 (592)
T ss_dssp EEESCBCCTTCTTGGGGCCT
T ss_pred ECcCCcCCHHHHHHHHHhCC
Confidence 88888888777776665443
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=4.3e-23 Score=224.11 Aligned_cols=335 Identities=15% Similarity=0.167 Sum_probs=241.4
Q ss_pred CccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHH
Q 008809 134 DVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEA 213 (552)
Q Consensus 134 ~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~ 213 (552)
.++++++++.. .++...+..+. ..+++|+.|++++|.++..+...+...+.. .++|++|++++|.++......
T Consensus 139 ~L~~L~L~~~~--~~~~~~l~~~~----~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 139 DLETLKLDKCS--GFTTDGLLSIV----THCRKIKTLLMEESSFSEKDGKWLHELAQH-NTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp GCCEEEEESCE--EEEHHHHHHHH----HHCTTCSEEECTTCEEECCCSHHHHHHHHH-CCCCCEEECTTCCCSSCCHHH
T ss_pred cCcEEECcCCC--CcCHHHHHHHH----hhCCCCCEEECccccccCcchhHHHHHHhc-CCCccEEEeeccCCCccCHHH
Confidence 49999998754 23444444433 334899999999998855444444444444 489999999999887443344
Q ss_pred HHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCC----------------------HHH
Q 008809 214 LEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGIS----------------------KEA 271 (552)
Q Consensus 214 l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~----------------------~~~ 271 (552)
+..+ +.. .++|++|++++|.+.. +...+..+++|+.|+++.+... ...
T Consensus 212 l~~~--~~~---~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 281 (592)
T 3ogk_B 212 LETI--ARN---CRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG 281 (592)
T ss_dssp HHHH--HHH---CTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC
T ss_pred HHHH--Hhh---CCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc
Confidence 3322 222 3799999999998765 3345555688888888642111 000
Q ss_pred HHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecC----
Q 008809 272 ARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLR---- 347 (552)
Q Consensus 272 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls---- 347 (552)
...+...+..+++|++|+|++|.+++.+ +...+..+++|+.|+++ +.+++.+. ...+..+++|++|+++
T Consensus 282 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~~~~~~~~L~~L~L~-~~~~~~~l---~~~~~~~~~L~~L~L~~g~~ 354 (592)
T 3ogk_B 282 PNEMPILFPFAAQIRKLDLLYALLETED---HCTLIQKCPNLEVLETR-NVIGDRGL---EVLAQYCKQLKRLRIERGAD 354 (592)
T ss_dssp TTTGGGGGGGGGGCCEEEETTCCCCHHH---HHHHHTTCTTCCEEEEE-GGGHHHHH---HHHHHHCTTCCEEEEECCCC
T ss_pred hhHHHHHHhhcCCCcEEecCCCcCCHHH---HHHHHHhCcCCCEEecc-CccCHHHH---HHHHHhCCCCCEEEeecCcc
Confidence 1122334456789999999999988755 34457889999999999 66666554 4444678899999999
Q ss_pred -------CCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEcc----CCCCCcchH-HH
Q 008809 348 -------DNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELA----GNDITVEAA-PV 415 (552)
Q Consensus 348 -------~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls----~n~l~~~~~-~~ 415 (552)
.|.++..+... ....+++|+.|+++.|.+++.++..+... +++|++|+++ .|.+++... ..
T Consensus 355 ~~~~~~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 355 EQGMEDEEGLVSQRGLIA---LAQGCQELEYMAVYVSDITNESLESIGTY----LKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp SSTTSSTTCCCCHHHHHH---HHHHCTTCSEEEEEESCCCHHHHHHHHHH----CCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred ccccccccCccCHHHHHH---HHhhCccCeEEEeecCCccHHHHHHHHhh----CCCCcEEEEeecCCCccccCchHHHH
Confidence 36788766443 34568999999999999999888777652 6799999996 566776311 12
Q ss_pred HHHHhhcCCCcCEEEccCCC--CCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCC
Q 008809 416 ISACVAAKQHLTKLNLAENE--LKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANII 493 (552)
Q Consensus 416 l~~~l~~~~~L~~L~Ls~n~--l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i 493 (552)
+...+..+++|+.|+|++|. +++.++..++. .+++|+.|+|++|.+++.++..+ +..+++|+.|+|++|+|
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ----YSPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----SCTTCCEEEECSCCSSHHHHHHH---HTCCTTCCEEEEESCCC
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----hCccceEeeccCCCCCHHHHHHH---HhcCcccCeeeccCCCC
Confidence 44445667999999998654 89888877765 68899999999999999775544 45789999999999999
Q ss_pred CHHHHHHHHHHHh
Q 008809 494 SEEGIDEVKEIFK 506 (552)
Q Consensus 494 ~~~g~~~l~~~l~ 506 (552)
++.++..+...++
T Consensus 501 ~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 501 SERAIAAAVTKLP 513 (592)
T ss_dssp BHHHHHHHHHHCS
T ss_pred cHHHHHHHHHhcC
Confidence 9999998877654
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.7e-23 Score=211.69 Aligned_cols=281 Identities=20% Similarity=0.238 Sum_probs=146.8
Q ss_pred cCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchH
Q 008809 132 TADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEA 211 (552)
Q Consensus 132 ~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~ 211 (552)
.+.++++++++.....+. .+... ++++.|++++|.+.... .+.. .++|++|++++|.+.....
T Consensus 65 ~~~L~~L~l~~n~i~~~~---------~~~~l-~~L~~L~L~~n~i~~~~------~~~~-l~~L~~L~l~~n~i~~~~~ 127 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDIS---------PLSNL-VKLTNLYIGTNKITDIS------ALQN-LTNLRELYLNEDNISDISP 127 (347)
T ss_dssp CTTCCEEECCSSCCCCCG---------GGTTC-TTCCEEECCSSCCCCCG------GGTT-CTTCSEEECTTSCCCCCGG
T ss_pred cCCccEEEccCCccccch---------hhhcC-CcCCEEEccCCcccCch------HHcC-CCcCCEEECcCCcccCchh
Confidence 345566666655433211 12222 55666666666554311 1111 2556666666665554322
Q ss_pred HHHHHHHHHHHHhcCCCccEEEcCCCC-CCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 008809 212 EALEVMAIFSAALEGSVLKSLNLSDNA-LGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQF 290 (552)
Q Consensus 212 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 290 (552)
+. ..++|++|++++|. +... ..+..+++|+.|++++|.++.... +..+++|++|++
T Consensus 128 --~~---------~l~~L~~L~l~~n~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L~l 184 (347)
T 4fmz_A 128 --LA---------NLTKMYSLNLGANHNLSDL------SPLSNMTGLNYLTVTESKVKDVTP------IANLTDLYSLSL 184 (347)
T ss_dssp --GT---------TCTTCCEEECTTCTTCCCC------GGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEEEC
T ss_pred --hc---------cCCceeEEECCCCCCcccc------cchhhCCCCcEEEecCCCcCCchh------hccCCCCCEEEc
Confidence 11 11456666666662 2221 114445566666666666544321 334556666666
Q ss_pred ccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCccc
Q 008809 291 HNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLT 370 (552)
Q Consensus 291 s~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~ 370 (552)
++|.+.. ++. +..+++|+.|++++|.+.... .+..+++|+.|++++|.++.. +. +..+++|+
T Consensus 185 ~~n~l~~-----~~~-~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~-----~~-~~~l~~L~ 246 (347)
T 4fmz_A 185 NYNQIED-----ISP-LASLTSLHYFTAYVNQITDIT------PVANMTRLNSLKIGNNKITDL-----SP-LANLSQLT 246 (347)
T ss_dssp TTSCCCC-----CGG-GGGCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCC
T ss_pred cCCcccc-----ccc-ccCCCccceeecccCCCCCCc------hhhcCCcCCEEEccCCccCCC-----cc-hhcCCCCC
Confidence 6666554 222 455666666666666655421 145566666666666666552 11 55666666
Q ss_pred EEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhh
Q 008809 371 EVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQ 450 (552)
Q Consensus 371 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~ 450 (552)
.|++++|.++... .+ ..+++|+.|++++|.++... .+..+++|+.|++++|.+++.++..+.
T Consensus 247 ~L~l~~n~l~~~~------~~-~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~----- 308 (347)
T 4fmz_A 247 WLEIGTNQISDIN------AV-KDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLNNNQLGNEDMEVIG----- 308 (347)
T ss_dssp EEECCSSCCCCCG------GG-TTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCGGGHHHHH-----
T ss_pred EEECCCCccCCCh------hH-hcCCCcCEEEccCCccCCCh------hhcCCCCCCEEECcCCcCCCcChhHhh-----
Confidence 6666666665521 11 22466666666666665531 244456666666666666654443333
Q ss_pred CCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008809 451 GHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 451 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
.+++|+.|++++|.+++... +..+++|+.|++++|+|+
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC---
T ss_pred ccccCCEEEccCCccccccC------hhhhhccceeehhhhccc
Confidence 56666666666666655311 445666666666666654
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=7.9e-26 Score=237.60 Aligned_cols=327 Identities=16% Similarity=0.170 Sum_probs=212.0
Q ss_pred CCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHH-HHHHHHHHHHhhccCccEEEeccccCCCchH
Q 008809 133 ADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLE-AARVAEPILVSINSQLKEVDLSDFVAGRPEA 211 (552)
Q Consensus 133 ~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~ 211 (552)
+.++++|+++..+..+. ...+... ++|+.|++++|.+... .... +.. .++|++|+|++|.+....+
T Consensus 30 ~~l~~L~Ls~n~i~~~~-------~~~~~~l-~~L~~L~L~~n~~~~~i~~~~----~~~-l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN-------ETSFSRL-QDLQFLKVEQQTPGLVIRNNT----FRG-LSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp TTCCEEECCSSCCCEEC-------TTTTSSC-TTCCEEECCCCSTTCEECTTT----TTT-CTTCCEEECTTCTTCEECT
T ss_pred CccCEEEecCCccCcCC-------hhHhccC-ccccEEECcCCcccceECccc----ccc-cccCCEEeCCCCccCccCh
Confidence 56678888876654321 2233333 7788888887766311 1111 111 2678888888877765544
Q ss_pred HHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcc
Q 008809 212 EALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFH 291 (552)
Q Consensus 212 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 291 (552)
..+..+ ++|++|+|++|.++...... ..+..+++|++|+|++|.++...+.. .+..+++|++|+++
T Consensus 97 ~~~~~l---------~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 97 GAFNGL---------ANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPAS---FFLNMRRFHVLDLT 162 (455)
T ss_dssp TTTTTC---------TTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCG---GGGGCTTCCEEECT
T ss_pred hhccCc---------ccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCccc---ccCCCCcccEEeCC
Confidence 433332 57778888877776532111 12555677777777777776432211 13445677777777
Q ss_pred cCCCChHHHHHHHH------------------------------HhhcCCCccEEEeeCCCCChHHHHHHHHHhh-----
Q 008809 292 NNMTGDEGAQAISD------------------------------VVKHSPLLEDFRCSSTRIGSEGGTALSEALE----- 336 (552)
Q Consensus 292 ~n~l~~~g~~~l~~------------------------------~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~----- 336 (552)
+|.+.......+.. .+..+++|+.|++++|+++......+...+.
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred CCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccccee
Confidence 77665421111111 1223467888888888887764444443311
Q ss_pred ------------------------------cCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 337 ------------------------------SCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 337 ------------------------------~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
.+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.......
T Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 318 (455)
T 3v47_A 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKIDDNA 318 (455)
T ss_dssp EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred eEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc----chhhcccCCCCCEEECCCCcccccChhH
Confidence 125788888888888763 3556788899999999999998754333
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
+ ..+++|++|++++|.++...+.. +..+++|++|+|++|.++..++. .+. .+++|+.|+|++|.|+
T Consensus 319 ~-----~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~----~~~-~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 319 F-----WGLTHLLKLNLSQNFLGSIDSRM----FENLDKLEVLDLSYNHIRALGDQ----SFL-GLPNLKELALDTNQLK 384 (455)
T ss_dssp T-----TTCTTCCEEECCSSCCCEECGGG----GTTCTTCCEEECCSSCCCEECTT----TTT-TCTTCCEEECCSSCCS
T ss_pred h-----cCcccCCEEECCCCccCCcChhH----hcCcccCCEEECCCCcccccChh----hcc-ccccccEEECCCCccc
Confidence 3 23789999999999998765433 45569999999999999875433 334 7899999999999998
Q ss_pred HHHHHHHHHHHhcCCCccEEEecCCCCCHHH--HHHHHHHHhcC
Q 008809 467 RAGARQLAQVVIQKPGFKQLNIDANIISEEG--IDEVKEIFKNS 508 (552)
Q Consensus 467 ~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g--~~~l~~~l~~~ 508 (552)
... ...+..+++|+.|+|++|+++..- +..+...+..+
T Consensus 385 ~~~----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 424 (455)
T 3v47_A 385 SVP----DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 424 (455)
T ss_dssp CCC----TTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred cCC----HhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhC
Confidence 642 223467899999999999988643 55666666655
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.8e-23 Score=211.50 Aligned_cols=284 Identities=17% Similarity=0.172 Sum_probs=223.2
Q ss_pred cCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchH
Q 008809 132 TADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEA 211 (552)
Q Consensus 132 ~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~ 211 (552)
.+.++.+++++.....+ ..+... +++++|++++|.++.... +.. .++|++|++++|.+...+
T Consensus 43 l~~L~~L~l~~~~i~~~---------~~~~~~-~~L~~L~l~~n~i~~~~~------~~~-l~~L~~L~L~~n~i~~~~- 104 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI---------QGIEYL-TNLEYLNLNGNQITDISP------LSN-LVKLTNLYIGTNKITDIS- 104 (347)
T ss_dssp HTTCSEEECCSSCCCCC---------TTGGGC-TTCCEEECCSSCCCCCGG------GTT-CTTCCEEECCSSCCCCCG-
T ss_pred cccccEEEEeCCccccc---------hhhhhc-CCccEEEccCCccccchh------hhc-CCcCCEEEccCCcccCch-
Confidence 35679999999776542 234444 899999999999875332 222 489999999999887642
Q ss_pred HHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcc
Q 008809 212 EALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFH 291 (552)
Q Consensus 212 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 291 (552)
.+. ..++|++|++++|.+..... +..+++|+.|++++|...... ..+..+++|++|+++
T Consensus 105 -~~~---------~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 105 -ALQ---------NLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVT 163 (347)
T ss_dssp -GGT---------TCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCC-----GGGTTCTTCCEEECC
T ss_pred -HHc---------CCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCcccc-----cchhhCCCCcEEEec
Confidence 121 23799999999999987422 667899999999999543221 126778999999999
Q ss_pred cCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccE
Q 008809 292 NNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTE 371 (552)
Q Consensus 292 ~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~ 371 (552)
+|.+.. ++. +..+++|+.|++++|.+... + .+..+++|+.|++++|.+.... .+..+++|+.
T Consensus 164 ~~~~~~-----~~~-~~~l~~L~~L~l~~n~l~~~-----~-~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~ 225 (347)
T 4fmz_A 164 ESKVKD-----VTP-IANLTDLYSLSLNYNQIEDI-----S-PLASLTSLHYFTAYVNQITDIT------PVANMTRLNS 225 (347)
T ss_dssp SSCCCC-----CGG-GGGCTTCSEEECTTSCCCCC-----G-GGGGCTTCCEEECCSSCCCCCG------GGGGCTTCCE
T ss_pred CCCcCC-----chh-hccCCCCCEEEccCCccccc-----c-cccCCCccceeecccCCCCCCc------hhhcCCcCCE
Confidence 999886 322 77899999999999998863 2 2778999999999999998732 2788999999
Q ss_pred EecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhC
Q 008809 372 VYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQG 451 (552)
Q Consensus 372 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~ 451 (552)
|++++|.+..... + ..+++|++|++++|.++.. ..+..+++|+.|++++|.+++. ..+. .
T Consensus 226 L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~-~ 285 (347)
T 4fmz_A 226 LKIGNNKITDLSP------L-ANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLN-N 285 (347)
T ss_dssp EECCSSCCCCCGG------G-TTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGG-G
T ss_pred EEccCCccCCCcc------h-hcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhc-C
Confidence 9999999987543 2 3478999999999999874 2366779999999999999873 2345 7
Q ss_pred CCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHH
Q 008809 452 HDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEE 496 (552)
Q Consensus 452 ~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~ 496 (552)
+++|+.|++++|.++.... ..+..+++|+.|++++|++++.
T Consensus 286 l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCCCEEECcCCcCCCcCh----hHhhccccCCEEEccCCccccc
Confidence 9999999999999987654 4455699999999999999864
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=206.64 Aligned_cols=212 Identities=21% Similarity=0.252 Sum_probs=151.5
Q ss_pred CCccEEEcccCCCChHHHHHHHHHhhcC-CCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHH
Q 008809 283 EKLRVLQFHNNMTGDEGAQAISDVVKHS-PLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSK 361 (552)
Q Consensus 283 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~-~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~ 361 (552)
+.|++|+|++|.++..++..++..+... ++|+.|+|++|.+++.+...+...+. +|+.|+|++|.+++.++..+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHHH
Confidence 5677888888888887777777777655 57888888888888777666665554 5677888888887777777777
Q ss_pred HHc-cCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchH
Q 008809 362 ALS-NYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDG 440 (552)
Q Consensus 362 ~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g 440 (552)
.+. .+++|+.|+|++|.+++.++..++.++.. +++|++|+|++|.|++.++..++..+..+++|+.|+|++|.|++.|
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 774 46778888888888777777777777765 4678888888887777777777777777777888888888888777
Q ss_pred HHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcC-CCccEEE--ecCCCCCHHHHH
Q 008809 441 AIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQK-PGFKQLN--IDANIISEEGID 499 (552)
Q Consensus 441 ~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~-~~L~~L~--L~~N~i~~~g~~ 499 (552)
+..++.++. .+++|++|+|++|.|++.|+..+..+.... ..|+.+. +.+|.+++....
T Consensus 228 ~~~l~~~L~-~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~ 288 (372)
T 3un9_A 228 ALALARAAR-EHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV 288 (372)
T ss_dssp HHHHHHHHH-HCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHH
T ss_pred HHHHHHHHH-hCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHH
Confidence 777777777 677788888888888877777776643322 1277777 677777655433
No 14
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=1.3e-22 Score=220.23 Aligned_cols=334 Identities=15% Similarity=0.163 Sum_probs=221.4
Q ss_pred cccCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCC-CCCHHHHHHHHHHHHhhccCccEEEeccccCCC
Q 008809 130 VSTADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNR-SFGLEAARVAEPILVSINSQLKEVDLSDFVAGR 208 (552)
Q Consensus 130 ~~~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~ 208 (552)
...+.++.+++++.. ++......+... +++|+.|++++| .++..+...+.. . .++|++|+|++|.+++
T Consensus 102 ~~~~~L~~L~L~~~~---~~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~l~~~~~---~-~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV---VTDDCLELIAKS----FKNFKVLVLSSCEGFSTDGLAAIAA---T-CRNLKELDLRESDVDD 170 (594)
T ss_dssp HHCTTCCEEEEESCB---CCHHHHHHHHHH----CTTCCEEEEESCEEEEHHHHHHHHH---H-CTTCCEEECTTCEEEC
T ss_pred HhCCCCCeEEeeCcE---EcHHHHHHHHHh----CCCCcEEeCCCcCCCCHHHHHHHHH---h-CCCCCEEeCcCCccCC
Confidence 355678888888764 344444333322 378889999888 666544433322 2 4789999999887665
Q ss_pred chHHHHHHHHHHHHHh-cCCCccEEEcCCCC--CCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHh-------
Q 008809 209 PEAEALEVMAIFSAAL-EGSVLKSLNLSDNA--LGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCEL------- 278 (552)
Q Consensus 209 ~~~~~l~~l~~~~~~l-~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~------- 278 (552)
.....+.. .. ..++|++|++++|. ++...+. .++..+++|++|++++|.-... ...+...
T Consensus 171 ~~~~~l~~------~~~~~~~L~~L~l~~~~~~~~~~~l~---~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 171 VSGHWLSH------FPDTYTSLVSLNISCLASEVSFSALE---RLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEEL 240 (594)
T ss_dssp CCGGGGGG------SCTTCCCCCEEECTTCCSCCCHHHHH---HHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEE
T ss_pred cchHHHHH------HhhcCCcCcEEEecccCCcCCHHHHH---HHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEc
Confidence 44332221 11 23689999999886 6555444 4444578999999998821111 1111100
Q ss_pred --------------------c------------------------CCCCCccEEEcccCCCChHHHHHHHHHhhcCCCcc
Q 008809 279 --------------------I------------------------PSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLE 314 (552)
Q Consensus 279 --------------------l------------------------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 314 (552)
+ ..+++|++|+|++|.+++.+ +...+..+++|+
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~ 317 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQ 317 (594)
T ss_dssp ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH---HHHHHTTCTTCC
T ss_pred ccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH---HHHHHhcCCCcC
Confidence 0 02356777777777776544 344456677888
Q ss_pred EEEeeCCCCChHHHHHHHHHhhcCCCCCEEec---------CCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHH
Q 008809 315 DFRCSSTRIGSEGGTALSEALESCTHLKKLDL---------RDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTV 385 (552)
Q Consensus 315 ~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~L---------s~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~ 385 (552)
.|++++| +++.+.. .....+++|+.|++ +.+.++..+...+. ..+++|+.|.++.|.+++.++.
T Consensus 318 ~L~l~~~-~~~~~l~---~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~---~~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 318 RLWVLDY-IEDAGLE---VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS---MGCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp EEEEEGG-GHHHHHH---HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH---HHCTTCCEEEEEESCCCHHHHH
T ss_pred EEeCcCc-cCHHHHH---HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH---HhchhHHHHHHhcCCcCHHHHH
Confidence 8888777 5544433 33345778888887 33567766543332 3467888888888888887766
Q ss_pred HHHHHHhcCCCCccEEEcc--C----CCCCcch-HHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEE
Q 008809 386 AITNALKGSAPLLEVLELA--G----NDITVEA-APVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVV 458 (552)
Q Consensus 386 ~l~~~l~~~~~~L~~L~Ls--~----n~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L 458 (552)
.+.. .+++|+.|+++ + +.++... ...+...+..+++|+.|+|++ .+++.++..++. .+++|+.|
T Consensus 391 ~l~~----~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~----~~~~L~~L 461 (594)
T 2p1m_B 391 TIAR----NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT----YAKKMEML 461 (594)
T ss_dssp HHHH----HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH----HCTTCCEE
T ss_pred HHHh----hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH----hchhccEe
Confidence 6653 25789999998 3 4566321 123444466678999999987 788888877775 47899999
Q ss_pred EccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHh
Q 008809 459 DMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFK 506 (552)
Q Consensus 459 ~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~ 506 (552)
+|++|.+++.++..++. .+++|+.|+|++|++++.|+..+...++
T Consensus 462 ~L~~~~i~~~~~~~l~~---~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLS---GCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp EEESCCSSHHHHHHHHH---HCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred eccCCCCcHHHHHHHHh---cCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 99999999988777654 4899999999999999999887766544
No 15
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.89 E-value=4.3e-22 Score=202.60 Aligned_cols=218 Identities=19% Similarity=0.186 Sum_probs=185.0
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHhcCCC-CCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHH
Q 008809 255 SSLEELYLMNDGISKEAARAVCELIPST-EKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSE 333 (552)
Q Consensus 255 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~ 333 (552)
++|+.|+|++|.|+...+..+...+... ++|++|+|++|.+++.++..+...+. +|+.|+|++|.+++.++..++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHHH
Confidence 6799999999999999999999988764 69999999999999988888777655 6899999999999999999999
Q ss_pred Hhh-cCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcch
Q 008809 334 ALE-SCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEA 412 (552)
Q Consensus 334 ~l~-~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 412 (552)
.+. .+++|+.|+|++|.++..++..++.++..+++|++|+|++|.|++.++..++.++.. +++|++|+|++|.|++.+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCCCHHH
Confidence 885 578999999999999999999999999999999999999999999999999998877 479999999999999999
Q ss_pred HHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCC-CCccEEE--ccCCCCCHHHHHHHHHHHh
Q 008809 413 APVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGH-DQLKVVD--MSSNFIRRAGARQLAQVVI 478 (552)
Q Consensus 413 ~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~-~~L~~L~--Ls~n~i~~~g~~~l~~~l~ 478 (552)
+..++.++..+++|++|+|++|.|++.|+..++.... .. ..|+.+. +.+|.++..... +...+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~-~~~~~L~~l~~ll~~~~~~~~~~~-~l~~l~ 294 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGG-AAEGGARVVVSLTEGTAVSEYWSV-ILSEVQ 294 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-------CEEECCCC----CHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhc-CCCccchhhHhhhcCCccCHHHHH-HHHHHH
Confidence 9999999999999999999999999999998887544 22 2388888 888888765433 333343
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.1e-24 Score=229.01 Aligned_cols=289 Identities=20% Similarity=0.176 Sum_probs=197.3
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCC-chHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGR-PEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKG 243 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~-~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~ 243 (552)
++++.|++++|.++......+.. .++|++|+|++|.+.. ..+..+..+ ++|++|+|++|.++...
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~L~~n~~~~~i~~~~~~~l---------~~L~~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSR-----LQDLQFLKVEQQTPGLVIRNNTFRGL---------SSLIILKLDYNQFLQLE 95 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSS-----CTTCCEEECCCCSTTCEECTTTTTTC---------TTCCEEECTTCTTCEEC
T ss_pred CccCEEEecCCccCcCChhHhcc-----CccccEEECcCCcccceECccccccc---------ccCCEEeCCCCccCccC
Confidence 78999999999997432222222 3799999999998752 223333332 79999999999998652
Q ss_pred HHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH-HhhcCCCccEEEeeCCC
Q 008809 244 VRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD-VVKHSPLLEDFRCSSTR 322 (552)
Q Consensus 244 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~ls~n~ 322 (552)
...+..+++|++|+|++|.+++..+.. ..+..+++|++|+|++|.+... .+. .+..+++|+.|++++|.
T Consensus 96 ----~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 96 ----TGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKI----QPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp ----TTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSC----CCCGGGGGCTTCCEEECTTCC
T ss_pred ----hhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCcc----CcccccCCCCcccEEeCCCCc
Confidence 334566799999999999998643321 2266789999999999998762 122 26789999999999999
Q ss_pred CChHHHHHHHH------------------------------HhhcCCCCCEEecCCCCCChHHHHHHHHHHc--------
Q 008809 323 IGSEGGTALSE------------------------------ALESCTHLKKLDLRDNMFGVEAGVALSKALS-------- 364 (552)
Q Consensus 323 l~~~~~~~l~~------------------------------~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~-------- 364 (552)
+.......+.. .+..+++|+.|++++|.++......+...+.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 76532111111 1223467888888888887765444433321
Q ss_pred ---------------------------cCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHH
Q 008809 365 ---------------------------NYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVIS 417 (552)
Q Consensus 365 ---------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 417 (552)
..++|+.|++++|.+.......+ ..+++|++|++++|.++...+..
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~-- 318 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF-----SHFTDLEQLTLAQNEINKIDDNA-- 318 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT-----TTCTTCCEEECTTSCCCEECTTT--
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc-----ccCCCCCEEECCCCcccccChhH--
Confidence 11467777777777665432222 23678888888888887654433
Q ss_pred HHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008809 418 ACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 418 ~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
+..+++|+.|+|++|.++..... .+. .+++|++|+|++|.|+..+ +..+..+++|+.|+|++|.|+.
T Consensus 319 --~~~l~~L~~L~Ls~N~l~~~~~~----~~~-~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 319 --FWGLTHLLKLNLSQNFLGSIDSR----MFE-NLDKLEVLDLSYNHIRALG----DQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp --TTTCTTCCEEECCSSCCCEECGG----GGT-TCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSC
T ss_pred --hcCcccCCEEECCCCccCCcChh----Hhc-CcccCCEEECCCCcccccC----hhhccccccccEEECCCCcccc
Confidence 34458888888888888764322 233 6888888888888887642 3445568888888888888875
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.2e-24 Score=230.14 Aligned_cols=303 Identities=15% Similarity=0.135 Sum_probs=226.1
Q ss_pred CCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHH
Q 008809 133 ADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAE 212 (552)
Q Consensus 133 ~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~ 212 (552)
..++.+|+++..+..+. ...+... ++|+.|++++|.++......+. . .++|++|+|++|.+...+..
T Consensus 32 ~~l~~L~L~~n~l~~~~-------~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN-------QDEFASF-PHLEELELNENIVSAVEPGAFN----N-LFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp TTCSEEECCSSCCCEEC-------TTTTTTC-TTCCEEECTTSCCCEECTTTTT----T-CTTCCEEECCSSCCCSCCTT
T ss_pred CCCcEEECCCCccceEC-------HhHccCC-CCCCEEECCCCccCEeChhhhh----C-CccCCEEECCCCcCCccCcc
Confidence 56799999998765432 1234444 8999999999998643222222 2 37999999999988876544
Q ss_pred HHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEccc
Q 008809 213 ALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHN 292 (552)
Q Consensus 213 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 292 (552)
.+..+ ++|++|+|++|.+.... ...+..+++|+.|+|++|.++.... ..+..+++|++|+|++
T Consensus 99 ~~~~l---------~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 99 VFTGL---------SNLTKLDISENKIVILL----DYMFQDLYNLKSLEVGDNDLVYISH----RAFSGLNSLEQLTLEK 161 (477)
T ss_dssp SSTTC---------TTCCEEECTTSCCCEEC----TTTTTTCTTCCEEEECCTTCCEECT----TSSTTCTTCCEEEEES
T ss_pred cccCC---------CCCCEEECCCCccccCC----hhHccccccCCEEECCCCccceeCh----hhccCCCCCCEEECCC
Confidence 33322 79999999999988642 2345667999999999999875432 2356678999999999
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEE
Q 008809 293 NMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEV 372 (552)
Q Consensus 293 n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L 372 (552)
|.+... ....+..+++|+.|++++|.+... ....+..+++|+.|++++|.+... ++..+....+|+.|
T Consensus 162 n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L 229 (477)
T 2id5_A 162 CNLTSI----PTEALSHLHGLIVLRLRHLNINAI----RDYSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSL 229 (477)
T ss_dssp CCCSSC----CHHHHTTCTTCCEEEEESCCCCEE----CTTCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEE
T ss_pred CcCccc----ChhHhcccCCCcEEeCCCCcCcEe----ChhhcccCcccceeeCCCCccccc----cCcccccCccccEE
Confidence 998862 234578899999999999998764 234567789999999999876543 23344455699999
Q ss_pred ecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCC
Q 008809 373 YLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGH 452 (552)
Q Consensus 373 ~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~ 452 (552)
++++|.++......+ ..+++|+.|+|++|.++...... +..+++|+.|+|++|.++..... .+. .+
T Consensus 230 ~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~----~~~-~l 295 (477)
T 2id5_A 230 SITHCNLTAVPYLAV-----RHLVYLRFLNLSYNPISTIEGSM----LHELLRLQEIQLVGGQLAVVEPY----AFR-GL 295 (477)
T ss_dssp EEESSCCCSCCHHHH-----TTCTTCCEEECCSSCCCEECTTS----CTTCTTCCEEECCSSCCSEECTT----TBT-TC
T ss_pred ECcCCcccccCHHHh-----cCccccCeeECCCCcCCccChhh----ccccccCCEEECCCCccceECHH----Hhc-Cc
Confidence 999999987543333 34789999999999998765433 45569999999999999874433 334 78
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008809 453 DQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 453 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
++|+.|+|++|.|+... ...+..+++|+.|+|++|++..
T Consensus 296 ~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLE----ESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTCCEEECCSSCCSCCC----GGGBSCGGGCCEEECCSSCEEC
T ss_pred ccCCEEECCCCcCceeC----HhHcCCCcccCEEEccCCCccC
Confidence 99999999999998642 2334567899999999999863
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=6.2e-24 Score=215.61 Aligned_cols=296 Identities=16% Similarity=0.157 Sum_probs=219.1
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHH
Q 008809 164 GNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKG 243 (552)
Q Consensus 164 ~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~ 243 (552)
|+.....+.+++.++.. .....++|++|++++|.+.......+..+ ++|++|+|++|.++...
T Consensus 30 C~~~~~c~~~~~~l~~i--------P~~~~~~L~~L~l~~n~i~~~~~~~~~~l---------~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI--------PSGLTEAVKSLDLSNNRITYISNSDLQRC---------VNLQALVLTSNGINTIE 92 (353)
T ss_dssp ECTTSEEECCSTTCSSC--------CTTCCTTCCEEECTTSCCCEECTTTTTTC---------TTCCEEECTTSCCCEEC
T ss_pred CCCCeEeeCCCCCcccc--------cccccccCcEEECCCCcCcccCHHHhccC---------CCCCEEECCCCccCccC
Confidence 34444567777777531 12224688888888888876544333332 68999999999888642
Q ss_pred HHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH--HhhcCCCccEEEeeCC
Q 008809 244 VRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD--VVKHSPLLEDFRCSST 321 (552)
Q Consensus 244 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~--~l~~~~~L~~L~ls~n 321 (552)
. ..+..+++|++|++++|.++..... .+..+++|++|++++|.+.. ++. .+..+++|+.|++++|
T Consensus 93 ~----~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 93 E----DSFSSLGSLEHLDLSYNYLSNLSSS----WFKPLSSLTFLNLLGNPYKT-----LGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp T----TTTTTCTTCCEEECCSSCCSSCCHH----HHTTCTTCSEEECTTCCCSS-----SCSSCSCTTCTTCCEEEEEES
T ss_pred H----hhcCCCCCCCEEECCCCcCCcCCHh----HhCCCccCCEEECCCCCCcc-----cCchhhhccCCCCcEEECCCC
Confidence 2 3355668999999999998754332 24567899999999998875 544 5677899999999998
Q ss_pred C-CChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccE
Q 008809 322 R-IGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEV 400 (552)
Q Consensus 322 ~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~ 400 (552)
. ++.. .+..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.++..... +...+++|+.
T Consensus 160 ~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~-----~~~~~~~L~~ 226 (353)
T 2z80_A 160 DTFTKI----QRKDFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHILLLEI-----FVDVTSSVEC 226 (353)
T ss_dssp SSCCEE----CTTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCSTTHHHH-----HHHHTTTEEE
T ss_pred cccccc----CHHHccCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCccccchhh-----hhhhcccccE
Confidence 4 6542 234567789999999999998763 256678899999999999998764322 2223689999
Q ss_pred EEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHH-Hhc
Q 008809 401 LELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQV-VIQ 479 (552)
Q Consensus 401 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~-l~~ 479 (552)
|++++|.++......+.. ...++.++.++|+++.+++.++..++..+. .+++|+.|++++|.|+. ++.. +..
T Consensus 227 L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~-~l~~L~~L~Ls~N~l~~-----i~~~~~~~ 299 (353)
T 2z80_A 227 LELRDTDLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLN-QISGLLELEFSRNQLKS-----VPDGIFDR 299 (353)
T ss_dssp EEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHH-TCTTCCEEECCSSCCCC-----CCTTTTTT
T ss_pred EECCCCcccccccccccc-ccccchhhccccccccccCcchhhhHHHHh-cccCCCEEECCCCCCCc-----cCHHHHhc
Confidence 999999988755444432 244578999999999999999999999998 99999999999999985 3333 367
Q ss_pred CCCccEEEecCCCCCHH--HHHHHHHHHhcCc
Q 008809 480 KPGFKQLNIDANIISEE--GIDEVKEIFKNSP 509 (552)
Q Consensus 480 ~~~L~~L~L~~N~i~~~--g~~~l~~~l~~~~ 509 (552)
+++|+.|+|++|+++.+ .+..+...++...
T Consensus 300 l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~ 331 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 331 (353)
T ss_dssp CTTCCEEECCSSCBCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEeeCCCccCcCCCcHHHHHHHHhcc
Confidence 89999999999998764 4677777776653
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=8.1e-24 Score=217.73 Aligned_cols=286 Identities=17% Similarity=0.144 Sum_probs=171.3
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
++++.|++++|.+.......+.. .++|++|+|++|.+....+..+..+ ++|++|+|++|.++....
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAY-----AHTIQKLYMGFNAIRYLPPHVFQNV---------PLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTT-----CTTCCEEECCSSCCCCCCTTTTTTC---------TTCCEEECCSSCCCCCCT
T ss_pred ccCcEEECCCCcccccChhhccC-----CCCcCEEECCCCCCCcCCHHHhcCC---------CCCCEEECCCCccCcCCH
Confidence 55566666665554321111111 2456666666655554433322222 455666666655553211
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH------------HhhcCCC
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD------------VVKHSPL 312 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~------------~l~~~~~ 312 (552)
..+..+++|++|++++|.++.... ..+..+++|++|++++|.+...+...++. .+...++
T Consensus 135 ----~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 206 (390)
T 3o6n_A 135 ----GIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206 (390)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSS
T ss_pred ----HHhcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCc
Confidence 112344556666666555543211 12334455556666555554421000000 0122345
Q ss_pred ccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHh
Q 008809 313 LEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALK 392 (552)
Q Consensus 313 L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 392 (552)
|+.|++++|.+... + ....++|+.|++++|.++.. ..+..+++|+.|++++|.+....+..+
T Consensus 207 L~~L~l~~n~l~~~-----~--~~~~~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~Ls~n~l~~~~~~~~----- 268 (390)
T 3o6n_A 207 VEELDASHNSINVV-----R--GPVNVELTILKLQHNNLTDT------AWLLNYPGLVEVDLSYNELEKIMYHPF----- 268 (390)
T ss_dssp CSEEECCSSCCCEE-----E--CCCCSSCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCEEESGGG-----
T ss_pred ceEEECCCCeeeec-----c--ccccccccEEECCCCCCccc------HHHcCCCCccEEECCCCcCCCcChhHc-----
Confidence 66666666665542 1 12246888999999988862 467888999999999999887543333
Q ss_pred cCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHH
Q 008809 393 GSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQ 472 (552)
Q Consensus 393 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~ 472 (552)
..+++|+.|++++|.++.... .+..+++|+.|+|++|.++.. ...+. .+++|+.|++++|.|+...
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~L~~n~l~~~-----~~~~~-~l~~L~~L~L~~N~i~~~~--- 334 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSHNHLLHV-----ERNQP-QFDRLENLYLDHNSIVTLK--- 334 (390)
T ss_dssp TTCSSCCEEECCSSCCCEEEC-----SSSCCTTCCEEECCSSCCCCC-----GGGHH-HHTTCSEEECCSSCCCCCC---
T ss_pred cccccCCEEECCCCcCcccCc-----ccCCCCCCCEEECCCCcceec-----Ccccc-ccCcCCEEECCCCccceeC---
Confidence 237899999999999876421 224468999999999998743 22233 5779999999999998742
Q ss_pred HHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhcC
Q 008809 473 LAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNS 508 (552)
Q Consensus 473 l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~ 508 (552)
+..+++|+.|++++|+++.++...+...+...
T Consensus 335 ----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~ 366 (390)
T 3o6n_A 335 ----LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 366 (390)
T ss_dssp ----CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred ----chhhccCCEEEcCCCCccchhHHHHHHHHHhh
Confidence 55689999999999999998877665554443
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=5.7e-25 Score=245.85 Aligned_cols=235 Identities=20% Similarity=0.193 Sum_probs=147.2
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
++|++|+|++|.++.. ++..+..+++|+.|++++|.+++..+ ..+..+++|++|+|++|.+.. .++..
T Consensus 418 ~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~~----~~p~~ 485 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGT----IPSSLGSLSKLRDLKLWLNMLEGEIP----QELMYVKTLETLILDFNDLTG----EIPSG 485 (768)
T ss_dssp TTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCCSCCC----GGGGGCTTCCEEECCSSCCCS----CCCGG
T ss_pred CCCCEEECcCCcccCc----ccHHHhcCCCCCEEECCCCcccCcCC----HHHcCCCCceEEEecCCcccC----cCCHH
Confidence 3455555555544322 12233444555666666555543221 123344666667776666653 14445
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..+++|+.|++++|++... ++..++.+++|+.|++++|.++.. ++..+..+++|+.|++++|.+.+..+..
T Consensus 486 l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGN----IPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred HhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 66677777777777776643 555666777777777777776643 3556677777777777777655321111
Q ss_pred HHHH-----------------------------------------------------------------HhcCCCCccEE
Q 008809 387 ITNA-----------------------------------------------------------------LKGSAPLLEVL 401 (552)
Q Consensus 387 l~~~-----------------------------------------------------------------l~~~~~~L~~L 401 (552)
+... ....+++|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 1100 00113567888
Q ss_pred EccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCC
Q 008809 402 ELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKP 481 (552)
Q Consensus 402 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~ 481 (552)
+|++|.+++..+..+ ..+++|+.|+|++|.++... +..+. .+++|+.|||++|.++.. ++..+..++
T Consensus 638 dLs~N~l~g~ip~~l----~~l~~L~~L~Ls~N~l~g~i----p~~l~-~L~~L~~LdLs~N~l~g~----ip~~l~~l~ 704 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEI----GSMPYLFILNLGHNDISGSI----PDEVG-DLRGLNILDLSSNKLDGR----IPQAMSALT 704 (768)
T ss_dssp ECCSSCCBSCCCGGG----GGCTTCCEEECCSSCCCSCC----CGGGG-GCTTCCEEECCSSCCEEC----CCGGGGGCC
T ss_pred ECcCCcccccCCHHH----hccccCCEEeCcCCccCCCC----ChHHh-CCCCCCEEECCCCcccCc----CChHHhCCC
Confidence 888888887665444 44588999999999887533 34444 788999999999998754 566677789
Q ss_pred CccEEEecCCCCC
Q 008809 482 GFKQLNIDANIIS 494 (552)
Q Consensus 482 ~L~~L~L~~N~i~ 494 (552)
.|+.|++++|+++
T Consensus 705 ~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 705 MLTEIDLSNNNLS 717 (768)
T ss_dssp CCSEEECCSSEEE
T ss_pred CCCEEECcCCccc
Confidence 9999999999875
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=2.8e-25 Score=248.36 Aligned_cols=317 Identities=19% Similarity=0.175 Sum_probs=236.5
Q ss_pred hhhcccCCccEeecccCccc-cccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEecccc
Q 008809 127 SEKVSTADVTLFDISKGQRA-FIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFV 205 (552)
Q Consensus 127 ~~~~~~~~l~~ldl~~~~~~-~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~ 205 (552)
......+.++++++++.... .+... .+... ++++.|++++|.+.......+.. ...+|+.|++++|.
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~-------~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~----l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMD-------TLLKM-RGLKVLDLSFNEFSGELPESLTN----LSASLLTLDLSSNN 379 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHH-------HHTTC-TTCCEEECCSSEEEECCCTTHHH----HTTTCSEEECCSSE
T ss_pred hHHhcCCCccEEECCCCcccCcCCHH-------HHhcC-CCCCEEeCcCCccCccccHHHHh----hhcCCcEEEccCCC
Confidence 44566788999999998754 32211 13333 88999999999875222222222 23489999999998
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCc
Q 008809 206 AGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKL 285 (552)
Q Consensus 206 ~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 285 (552)
+....+..+.. ...++|++|++++|.++.. ++..+..+++|+.|++++|.+++..+. .+..+++|
T Consensus 380 l~~~~~~~~~~-------~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L 444 (768)
T 3rgz_A 380 FSGPILPNLCQ-------NPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPS----SLGSLSKL 444 (768)
T ss_dssp EEEECCTTTTC-------STTCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTC
T ss_pred cCCCcChhhhh-------cccCCccEEECCCCccccc----cCHHHhcCCCCCEEECcCCcccCcccH----HHhcCCCC
Confidence 75432221110 0025899999999988754 345567789999999999988654322 34567899
Q ss_pred cEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHcc
Q 008809 286 RVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSN 365 (552)
Q Consensus 286 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~ 365 (552)
+.|++++|.+.. .++..+..+++|+.|++++|++... ++..+..+++|+.|++++|.++.. ++..+..
T Consensus 445 ~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~ 512 (768)
T 3rgz_A 445 RDLKLWLNMLEG----EIPQELMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGR 512 (768)
T ss_dssp CEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGG
T ss_pred CEEECCCCcccC----cCCHHHcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhc
Confidence 999999999874 2566788899999999999998864 677888999999999999999854 4677889
Q ss_pred CCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHH---------------------------
Q 008809 366 YADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISA--------------------------- 418 (552)
Q Consensus 366 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~--------------------------- 418 (552)
+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+++..+..+..
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELG-----DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGG-----GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred CCCCCEEECCCCcccCcCCHHHc-----CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 99999999999999865443332 3789999999999877544433321
Q ss_pred ---------------------------------------HhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEE
Q 008809 419 ---------------------------------------CVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVD 459 (552)
Q Consensus 419 ---------------------------------------~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~ 459 (552)
.+..+++|+.|+|++|.++... +..+. .++.|+.|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i----p~~l~-~l~~L~~L~ 662 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI----PKEIG-SMPYLFILN 662 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC----CGGGG-GCTTCCEEE
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC----CHHHh-ccccCCEEe
Confidence 1222467999999999987643 34455 799999999
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHH
Q 008809 460 MSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEE 496 (552)
Q Consensus 460 Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~ 496 (552)
|++|.++.. ++..+..++.|+.|||++|.++..
T Consensus 663 Ls~N~l~g~----ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 663 LGHNDISGS----IPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp CCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEC
T ss_pred CcCCccCCC----CChHHhCCCCCCEEECCCCcccCc
Confidence 999999864 677788899999999999998743
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=2.5e-22 Score=211.63 Aligned_cols=191 Identities=23% Similarity=0.262 Sum_probs=84.5
Q ss_pred CCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHH
Q 008809 254 QSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSE 333 (552)
Q Consensus 254 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~ 333 (552)
+++|+.|++++|.++... .+..+++|++|++++|.+.. +.. +..+++|+.|++++|.++.. .
T Consensus 176 l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~-----~~~-~~~l~~L~~L~l~~n~l~~~------~ 237 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDIS------VLAKLTNLESLIATNNQISD-----ITP-LGILTNLDELSLNGNQLKDI------G 237 (466)
T ss_dssp CTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCC-----CGG-GGGCTTCCEEECCSSCCCCC------G
T ss_pred CCCCCEEECcCCcCCCCh------hhccCCCCCEEEecCCcccc-----ccc-ccccCCCCEEECCCCCcccc------h
Confidence 344445555554443321 12333445555555554443 111 33444555555555544431 1
Q ss_pred HhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchH
Q 008809 334 ALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAA 413 (552)
Q Consensus 334 ~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 413 (552)
.+..+++|+.|++++|.+... . .+..+++|+.|++++|.+..... + ..+++|+.|++++|.++...+
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~-----~-~~~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~L~~n~l~~~~~ 304 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNL-----A-PLSGLTKLTELKLGANQISNISP------L-AGLTALTNLELNENQLEDISP 304 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCC-----G-GGTTCTTCSEEECCSSCCCCCGG------G-TTCTTCSEEECCSSCCSCCGG
T ss_pred hhhcCCCCCEEECCCCccccc-----h-hhhcCCCCCEEECCCCccCcccc------c-cCCCccCeEEcCCCcccCchh
Confidence 334445555555555554431 1 14444555555555554443221 1 124455555555555444222
Q ss_pred HHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCC
Q 008809 414 PVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANII 493 (552)
Q Consensus 414 ~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i 493 (552)
+..+++|+.|+|++|.+++... +. .+++|+.|++++|.+++. ..+..+++|+.|++++|++
T Consensus 305 ------~~~l~~L~~L~L~~n~l~~~~~------~~-~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 305 ------ISNLKNLTYLTLYFNNISDISP------VS-SLTKLQRLFFYNNKVSDV------SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ------GGGCTTCSEEECCSSCCSCCGG------GG-GCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCC
T ss_pred ------hcCCCCCCEEECcCCcCCCchh------hc-cCccCCEeECCCCccCCc------hhhccCCCCCEEeCCCCcc
Confidence 2334555555555555544221 22 445555555555555442 1233445555555555555
Q ss_pred C
Q 008809 494 S 494 (552)
Q Consensus 494 ~ 494 (552)
+
T Consensus 366 ~ 366 (466)
T 1o6v_A 366 S 366 (466)
T ss_dssp C
T ss_pred C
Confidence 4
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.4e-23 Score=222.47 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=104.6
Q ss_pred cCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHH
Q 008809 309 HSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAIT 388 (552)
Q Consensus 309 ~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 388 (552)
.+++|++|++++|+++.. ++..+..+++|+.|++++|.++.- ..++..+..+++|+.|++++|.+......
T Consensus 322 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~--- 392 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDISQNSVSYDEKK--- 392 (520)
T ss_dssp SCCCCCEEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCBH--HHHHHHHTTCTTCCEEECCSSCCBCCGGG---
T ss_pred hCCcccEEEeECCccChh----hhhhhccCCCCCEEEccCCccCcc--ccchHHHhhCCCCCEEECCCCcCCccccc---
Confidence 445566666666665542 334455566666666666666541 22445556666666666666666542111
Q ss_pred HHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHH
Q 008809 389 NALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRA 468 (552)
Q Consensus 389 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~ 468 (552)
.....+++|++|++++|.++...+..+ .++|+.|+|++|.|+. ++..+. .+++|+.|++++|.|+..
T Consensus 393 -~~~~~l~~L~~L~Ls~N~l~~~~~~~l------~~~L~~L~Ls~N~l~~-----ip~~~~-~l~~L~~L~L~~N~l~~l 459 (520)
T 2z7x_B 393 -GDCSWTKSLLSLNMSSNILTDTIFRCL------PPRIKVLDLHSNKIKS-----IPKQVV-KLEALQELNVASNQLKSV 459 (520)
T ss_dssp -CSCCCCTTCCEEECCSSCCCGGGGGSC------CTTCCEEECCSSCCCC-----CCGGGG-GCTTCCEEECCSSCCCCC
T ss_pred -chhccCccCCEEECcCCCCCcchhhhh------cccCCEEECCCCcccc-----cchhhh-cCCCCCEEECCCCcCCcc
Confidence 011224566667776666654332211 1578888888887762 334444 688999999999998753
Q ss_pred HHHHHHH-HHhcCCCccEEEecCCCCCH-HHHHHH-HHHHhcC
Q 008809 469 GARQLAQ-VVIQKPGFKQLNIDANIISE-EGIDEV-KEIFKNS 508 (552)
Q Consensus 469 g~~~l~~-~l~~~~~L~~L~L~~N~i~~-~g~~~l-~~~l~~~ 508 (552)
+. .+..+++|+.|++++|+++. ..+..+ ...+++.
T Consensus 460 -----~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~ 497 (520)
T 2z7x_B 460 -----PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 497 (520)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred -----CHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhc
Confidence 32 35678999999999999875 445555 5556554
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=4.6e-22 Score=209.57 Aligned_cols=281 Identities=23% Similarity=0.269 Sum_probs=185.0
Q ss_pred ccCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCch
Q 008809 131 STADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPE 210 (552)
Q Consensus 131 ~~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~ 210 (552)
..+.++++|+++.....+. ++... ++|+.|++++|.+..... +. ..++|++|++++|.+....
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~---------~~~~l-~~L~~L~l~~n~l~~~~~------~~-~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDIT---------PLKNL-TKLVDILMNNNQIADITP------LA-NLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp GCTTCCEEECCSSCCCCCG---------GGTTC-TTCCEEECCSSCCCCCGG------GT-TCTTCCEEECCSSCCCCCG
T ss_pred hhcCCCEEECCCCccCCch---------hhhcc-ccCCEEECCCCccccChh------hc-CCCCCCEEECCCCCCCCCh
Confidence 3455566666655433211 12222 556666666665543211 11 1255666666666555432
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 008809 211 AEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQF 290 (552)
Q Consensus 211 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 290 (552)
. +. ..++|++|++++|.+.... .+..+++|+.|+++++ +.... .+..+++|++|++
T Consensus 129 ~--~~---------~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~~-~~~~~------~~~~l~~L~~L~l 184 (466)
T 1o6v_A 129 P--LK---------NLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQ-VTDLK------PLANLTTLERLDI 184 (466)
T ss_dssp G--GT---------TCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEES-CCCCG------GGTTCTTCCEEEC
T ss_pred H--Hc---------CCCCCCEEECCCCccCCCh------hhccCCcccEeecCCc-ccCch------hhccCCCCCEEEC
Confidence 1 11 1145666666666555421 2444556666666532 22111 2556788899999
Q ss_pred ccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCccc
Q 008809 291 HNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLT 370 (552)
Q Consensus 291 s~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~ 370 (552)
++|.+.. +. .+..+++|+.|++++|.+.... .++.+++|+.|++++|.++.. ..+..+++|+
T Consensus 185 ~~n~l~~-----~~-~l~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~ 246 (466)
T 1o6v_A 185 SSNKVSD-----IS-VLAKLTNLESLIATNNQISDIT------PLGILTNLDELSLNGNQLKDI------GTLASLTNLT 246 (466)
T ss_dssp CSSCCCC-----CG-GGGGCTTCSEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCC------GGGGGCTTCS
T ss_pred cCCcCCC-----Ch-hhccCCCCCEEEecCCcccccc------cccccCCCCEEECCCCCcccc------hhhhcCCCCC
Confidence 9888876 22 3677889999999999887631 266788999999999988762 3577888999
Q ss_pred EEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhh
Q 008809 371 EVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQ 450 (552)
Q Consensus 371 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~ 450 (552)
.|++++|.+..... + ..+++|+.|++++|.++...+ +..+++|+.|+|++|.+++... +.
T Consensus 247 ~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~- 306 (466)
T 1o6v_A 247 DLDLANNQISNLAP------L-SGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP------IS- 306 (466)
T ss_dssp EEECCSSCCCCCGG------G-TTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG------GG-
T ss_pred EEECCCCccccchh------h-hcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh------hc-
Confidence 99999998876432 2 347889999999999887543 5566899999999999876432 44
Q ss_pred CCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHH
Q 008809 451 GHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEE 496 (552)
Q Consensus 451 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~ 496 (552)
.+++|+.|++++|.+++... +..+++|+.|++++|.+++.
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCc
Confidence 78999999999999887532 56789999999999998864
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.9e-23 Score=227.00 Aligned_cols=281 Identities=17% Similarity=0.157 Sum_probs=166.7
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
++|+.|++++|.++......+.. .++|++|+|++|.++..++..+..+ ++|++|+|++|.++...
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~~L~L~~n~l~~l~- 139 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAY-----AHTIQKLYMGFNAIRYLPPHVFQNV---------PLLTVLVLERNDLSSLP- 139 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTT-----CTTCCEEECCSSCCCCCCTTTTTTC---------TTCCEEECCSSCCCCCC-
T ss_pred CCCcEEECCCCCCCCCChHHhcC-----CCCCCEEECCCCcCCCCCHHHHcCC---------CCCCEEEeeCCCCCCCC-
Confidence 55666666666554322111111 2456666666665554433322222 45666666666555321
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH------------HhhcCCC
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD------------VVKHSPL 312 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~------------~l~~~~~ 312 (552)
...+..+++|+.|+|++|.++...+ ..+..+++|++|+|++|.+.......++. .+...++
T Consensus 140 ---~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 212 (597)
T 3oja_B 140 ---RGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 212 (597)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTT
T ss_pred ---HHHhccCCCCCEEEeeCCcCCCCCh----hhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCch
Confidence 1122344556666666665543221 12334455666666655554411000000 0122344
Q ss_pred ccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHh
Q 008809 313 LEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALK 392 (552)
Q Consensus 313 L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 392 (552)
|+.|++++|.+... +. ...++|+.|+|++|.++. +..+..+++|+.|+|++|.+.+..+..+
T Consensus 213 L~~L~ls~n~l~~~-----~~--~~~~~L~~L~L~~n~l~~------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~----- 274 (597)
T 3oja_B 213 VEELDASHNSINVV-----RG--PVNVELTILKLQHNNLTD------TAWLLNYPGLVEVDLSYNELEKIMYHPF----- 274 (597)
T ss_dssp CSEEECCSSCCCEE-----EC--SCCSCCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCCCEEESGGG-----
T ss_pred hheeeccCCccccc-----cc--ccCCCCCEEECCCCCCCC------ChhhccCCCCCEEECCCCccCCCCHHHh-----
Confidence 55566666655432 11 123578888888888876 3567888999999999999887543333
Q ss_pred cCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHH
Q 008809 393 GSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQ 472 (552)
Q Consensus 393 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~ 472 (552)
..+++|+.|+|++|.++... ..+..+++|+.|+|++|.++.. +..+. .+++|+.|+|++|.|+...
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~-~l~~L~~L~L~~N~l~~~~--- 340 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSHNHLLHV-----ERNQP-QFDRLENLYLDHNSIVTLK--- 340 (597)
T ss_dssp TTCSSCCEEECTTSCCCEEE-----CSSSCCTTCCEEECCSSCCCCC-----GGGHH-HHTTCSEEECCSSCCCCCC---
T ss_pred cCccCCCEEECCCCCCCCCC-----cccccCCCCcEEECCCCCCCcc-----Ccccc-cCCCCCEEECCCCCCCCcC---
Confidence 23789999999999988732 1234468999999999998742 22233 5789999999999987642
Q ss_pred HHHHHhcCCCccEEEecCCCCCHHHHHHHHH
Q 008809 473 LAQVVIQKPGFKQLNIDANIISEEGIDEVKE 503 (552)
Q Consensus 473 l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~ 503 (552)
+..+++|+.|+|++|+++......+..
T Consensus 341 ----~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 341 ----LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp ----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred ----hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 556889999999999998876555533
No 26
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1e-20 Score=190.36 Aligned_cols=238 Identities=16% Similarity=0.187 Sum_probs=118.7
Q ss_pred cCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 008809 194 SQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAAR 273 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 273 (552)
..++.++++++.+.. ..+..+ + ..+++.|++++|.++..... +..+++|++|++++|.+++...
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~--~-----~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~- 110 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRL--L-----SQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTL- 110 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHH--H-----HTTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHH-
T ss_pred hhheeeccccccCCH---HHHHhh--h-----hccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHH-
Confidence 446666666665542 111111 0 03666666666655442111 2234556666666666554322
Q ss_pred HHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCC-CCChHHHHHHHHHhhcCCCCCEEecCCC-CC
Q 008809 274 AVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSST-RIGSEGGTALSEALESCTHLKKLDLRDN-MF 351 (552)
Q Consensus 274 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 351 (552)
...+..+++|++|+|++|.+++. .+..+..+++|++|++++| .+++.+ ++..+..+++|++|++++| .+
T Consensus 111 --~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 111 --HGILSQCSKLQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp --HHHHTTBCCCSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTTC
T ss_pred --HHHHhhCCCCCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCCc
Confidence 22234445666666666665542 2333445566666666666 455433 3334445566666666666 55
Q ss_pred ChHHHHHHHHHHccCC-cccEEecCCC--CCCchHHHHHHHHHhcCCCCccEEEccCCC-CCcchHHHHHHHhhcCCCcC
Q 008809 352 GVEAGVALSKALSNYA-DLTEVYLSYL--NLEDDGTVAITNALKGSAPLLEVLELAGND-ITVEAAPVISACVAAKQHLT 427 (552)
Q Consensus 352 ~~~~~~~L~~~l~~~~-~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~ 427 (552)
+..+ ++..+..++ +|++|++++| .+++.++..+.. .+++|++|++++|. +++..+..+ ..+++|+
T Consensus 182 ~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~ 250 (336)
T 2ast_B 182 TEKH---VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----RCPNLVHLDLSDSVMLKNDCFQEF----FQLNYLQ 250 (336)
T ss_dssp CHHH---HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH----HCTTCSEEECTTCTTCCGGGGGGG----GGCTTCC
T ss_pred ChHH---HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh----hCCCCCEEeCCCCCcCCHHHHHHH----hCCCCCC
Confidence 5433 233445555 6666666666 444433322221 14556666666665 444433322 3335666
Q ss_pred EEEccCC-CCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHH
Q 008809 428 KLNLAEN-ELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQL 473 (552)
Q Consensus 428 ~L~Ls~n-~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l 473 (552)
+|+|++| .+++.++..+ . .+++|+.|++++| +++.++..+
T Consensus 251 ~L~l~~~~~~~~~~~~~l----~-~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLEL----G-EIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp EEECTTCTTCCGGGGGGG----G-GCTTCCEEECTTS-SCTTCHHHH
T ss_pred EeeCCCCCCCCHHHHHHH----h-cCCCCCEEeccCc-cCHHHHHHH
Confidence 6666665 3444443222 2 4556666666665 555444443
No 27
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.9e-20 Score=188.42 Aligned_cols=255 Identities=14% Similarity=0.175 Sum_probs=197.7
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
..++.++++++.+.... +...+ ..+++.|++++|.++..... ....++|++|+|++|.++..+
T Consensus 47 ~~~~~l~l~~~~~~~~~---~~~~~---~~~l~~L~l~~n~l~~~~~~----------~~~~~~L~~L~L~~~~l~~~~- 109 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDV---TGRLL---SQGVIAFRCPRSFMDQPLAE----------HFSPFRVQHMDLSNSVIEVST- 109 (336)
T ss_dssp TTSSEEECTTCBCCHHH---HHHHH---HTTCSEEECTTCEECSCCCS----------CCCCBCCCEEECTTCEECHHH-
T ss_pred hhheeeccccccCCHHH---HHhhh---hccceEEEcCCccccccchh----------hccCCCCCEEEccCCCcCHHH-
Confidence 56999999999998432 22222 26899999999988765432 112379999999999988654
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccC-CCChHHHHHHHHHhhcCCCccEEEeeCC-C
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNN-MTGDEGAQAISDVVKHSPLLEDFRCSST-R 322 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~ls~n-~ 322 (552)
+...+..+++|++|+|++|.+++..+..+ ..+++|++|+|++| .+++.+ ++..+..+++|++|++++| .
T Consensus 110 --~~~~~~~~~~L~~L~L~~~~l~~~~~~~l----~~~~~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 110 --LHGILSQCSKLQNLSLEGLRLSDPIVNTL----AKNSNLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp --HHHHHTTBCCCSEEECTTCBCCHHHHHHH----TTCTTCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTT
T ss_pred --HHHHHhhCCCCCEEeCcCcccCHHHHHHH----hcCCCCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCC
Confidence 34556778999999999999998765544 45799999999999 788755 4555778999999999999 8
Q ss_pred CChHHHHHHHHHhhcCC-CCCEEecCCC--CCChHHHHHHHHHHccCCcccEEecCCCC-CCchHHHHHHHHHhcCCCCc
Q 008809 323 IGSEGGTALSEALESCT-HLKKLDLRDN--MFGVEAGVALSKALSNYADLTEVYLSYLN-LEDDGTVAITNALKGSAPLL 398 (552)
Q Consensus 323 l~~~~~~~l~~~l~~~~-~L~~L~Ls~n--~l~~~~~~~L~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L 398 (552)
+++.+ ++..+..++ +|+.|++++| .+++.+ ++..+..+++|+.|++++|. +++.++..+. .+++|
T Consensus 181 l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-----~l~~L 249 (336)
T 2ast_B 181 FTEKH---VQVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-----QLNYL 249 (336)
T ss_dssp CCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-----GCTTC
T ss_pred cChHH---HHHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-----CCCCC
Confidence 98765 456677899 9999999999 677544 55667789999999999998 7776665443 26899
Q ss_pred cEEEccCC-CCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHH
Q 008809 399 EVLELAGN-DITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRA 468 (552)
Q Consensus 399 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~ 468 (552)
++|++++| .+++.+.. .+..+++|+.|++++| +++.++..+.. .|..|++++|.++..
T Consensus 250 ~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~-i~~~~~~~l~~-------~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLL----ELGEIPTLKTLQVFGI-VPDGTLQLLKE-------ALPHLQINCSHFTTI 308 (336)
T ss_dssp CEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTS-SCTTCHHHHHH-------HSTTSEESCCCSCCT
T ss_pred CEeeCCCCCCCCHHHHH----HHhcCCCCCEEeccCc-cCHHHHHHHHh-------hCcceEEecccCccc
Confidence 99999999 46665442 3455799999999999 99888877764 234455899988764
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=7.4e-24 Score=223.98 Aligned_cols=280 Identities=16% Similarity=0.094 Sum_probs=213.1
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
.+++.|++++|.+.......+.. .++|++|+|++|.+....+..+..+ ++|++|+|++|.++....
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~i~~~~~~~~~~l---------~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFAS-----FPHLEELELNENIVSAVEPGAFNNL---------FNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTT-----CTTCCEEECTTSCCCEECTTTTTTC---------TTCCEEECCSSCCCSCCT
T ss_pred CCCcEEECCCCccceECHhHccC-----CCCCCEEECCCCccCEeChhhhhCC---------ccCCEEECCCCcCCccCc
Confidence 67999999999997543222222 3799999999999887655444333 799999999999886422
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCC
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~ 324 (552)
..+..+++|+.|+|++|.++.... ..+..+++|++|+|++|.+.... +..+..+++|+.|++++|.++
T Consensus 98 ----~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 98 ----GVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDNDLVYIS----HRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp ----TSSTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEEECCTTCCEEC----TTSSTTCTTCCEEEEESCCCS
T ss_pred ----ccccCCCCCCEEECCCCccccCCh----hHccccccCCEEECCCCccceeC----hhhccCCCCCCEEECCCCcCc
Confidence 234567999999999999875422 23567799999999999987621 234678899999999999988
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEcc
Q 008809 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELA 404 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 404 (552)
.. .+..+..+++|+.|++++|.+.... ...+..+++|+.|++++|.+.......+ .. ..+|+.|+++
T Consensus 166 ~~----~~~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~ 232 (477)
T 2id5_A 166 SI----PTEALSHLHGLIVLRLRHLNINAIR----DYSFKRLYRLKVLEISHWPYLDTMTPNC----LY-GLNLTSLSIT 232 (477)
T ss_dssp SC----CHHHHTTCTTCCEEEEESCCCCEEC----TTCSCSCTTCCEEEEECCTTCCEECTTT----TT-TCCCSEEEEE
T ss_pred cc----ChhHhcccCCCcEEeCCCCcCcEeC----hhhcccCcccceeeCCCCccccccCccc----cc-CccccEEECc
Confidence 64 3456788999999999999987632 3457788999999999986554322211 11 3589999999
Q ss_pred CCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCcc
Q 008809 405 GNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFK 484 (552)
Q Consensus 405 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~ 484 (552)
+|.++...... +..+++|+.|+|++|.++..... .+. .+++|+.|+|++|.++... +.++..+++|+
T Consensus 233 ~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~----~~~-~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~ 299 (477)
T 2id5_A 233 HCNLTAVPYLA----VRHLVYLRFLNLSYNPISTIEGS----MLH-ELLRLQEIQLVGGQLAVVE----PYAFRGLNYLR 299 (477)
T ss_dssp SSCCCSCCHHH----HTTCTTCCEEECCSSCCCEECTT----SCT-TCTTCCEEECCSSCCSEEC----TTTBTTCTTCC
T ss_pred CCcccccCHHH----hcCccccCeeECCCCcCCccChh----hcc-ccccCCEEECCCCccceEC----HHHhcCcccCC
Confidence 99998765444 45569999999999998864432 233 7899999999999998753 34556789999
Q ss_pred EEEecCCCCCHH
Q 008809 485 QLNIDANIISEE 496 (552)
Q Consensus 485 ~L~L~~N~i~~~ 496 (552)
.|+|++|.|+.-
T Consensus 300 ~L~L~~N~l~~~ 311 (477)
T 2id5_A 300 VLNVSGNQLTTL 311 (477)
T ss_dssp EEECCSSCCSCC
T ss_pred EEECCCCcCcee
Confidence 999999998753
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=9.6e-24 Score=229.92 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=67.8
Q ss_pred CCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHH
Q 008809 280 PSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVAL 359 (552)
Q Consensus 280 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L 359 (552)
..+++|++|++++|.+.. ++..+..+++|++|++++|.+... .+..+..+++|+.|++++|.+.... .
T Consensus 275 ~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~---~ 342 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSE-----LPSGLVGLSTLKKLVLSANKFENL----CQISASNFPSLTHLSIKGNTKRLEL---G 342 (606)
T ss_dssp TTCTTCSEEECTTSCCSC-----CCSSCCSCTTCCEEECTTCCCSBG----GGGCGGGCTTCSEEECCSCSSCCBC---C
T ss_pred ccccCCCEEeccCCccCC-----CChhhcccccCCEEECccCCcCcC----chhhhhccCcCCEEECCCCCccccc---c
Confidence 334566666666666654 444455566666666666666542 2334455566666666666543210 0
Q ss_pred HHHHccCCcccEEecCCCCCCchH--HHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCC
Q 008809 360 SKALSNYADLTEVYLSYLNLEDDG--TVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENEL 436 (552)
Q Consensus 360 ~~~l~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 436 (552)
...+..+++|+.|++++|.+.... ...+ ..+++|++|++++|.++...+.. +..+++|+.|++++|.+
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQL-----RNLSHLQSLNLSYNEPLSLKTEA----FKECPQLELLDLAFTRL 412 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTT-----TTCTTCCEEECCSCSCEEECTTT----TTTCTTCSEEECTTCCE
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhc-----ccCCCCCEEECCCCcCCcCCHHH----hcCCccCCeEECCCCcC
Confidence 112445566666666666555432 1111 12455555555555554432222 22234455555555543
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=6.7e-23 Score=210.89 Aligned_cols=275 Identities=21% Similarity=0.186 Sum_probs=184.3
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
.+++.++++++.++.....++.. .++|++|+|++|.+....+..+..+ ++|++|+|++|.++...
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~-----l~~L~~L~L~~n~i~~~~~~~~~~l---------~~L~~L~L~~n~l~~~~- 109 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDS-----FRQVELLNLNDLQIEEIDTYAFAYA---------HTIQKLYMGFNAIRYLP- 109 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHH-----CCCCSEEECTTSCCCEECTTTTTTC---------TTCCEEECCSSCCCCCC-
T ss_pred CCceEEEecCCchhhCChhHhcc-----cccCcEEECCCCcccccChhhccCC---------CCcCEEECCCCCCCcCC-
Confidence 77999999999987554444433 3899999999999887655444333 79999999999988642
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCC
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~ 324 (552)
...+..+++|+.|+|++|.++.... ..+..+++|++|++++|.+... .+..+..+++|+.|++++|+++
T Consensus 110 ---~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 110 ---PHVFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBC----CTTTTSSCTTCCEEECCSSCCS
T ss_pred ---HHHhcCCCCCCEEECCCCccCcCCH----HHhcCCCCCcEEECCCCccCcc----ChhhccCCCCCCEEECCCCcCC
Confidence 2345667999999999999874321 1246679999999999998761 2344778899999999999988
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHH--------------HHHHHHccCCcccEEecCCCCCCchHHHHHHHH
Q 008809 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGV--------------ALSKALSNYADLTEVYLSYLNLEDDGTVAITNA 390 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~--------------~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 390 (552)
.. .+..+++|+.|++++|.++..... .++ ....++|+.|++++|.+++.. .
T Consensus 179 ~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~l~~~~------~ 243 (390)
T 3o6n_A 179 HV-------DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTDTA------W 243 (390)
T ss_dssp BC-------CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE--CCCCSSCCEEECCSSCCCCCG------G
T ss_pred cc-------ccccccccceeecccccccccCCCCcceEEECCCCeeeecc--ccccccccEEECCCCCCcccH------H
Confidence 64 244556666666666655431000 000 012346666777777666531 1
Q ss_pred HhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHH
Q 008809 391 LKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGA 470 (552)
Q Consensus 391 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~ 470 (552)
+ ..+++|++|++++|.++...+.. +..+++|+.|+|++|.++... .... .+++|+.|++++|.++.
T Consensus 244 l-~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~-----~~~~-~l~~L~~L~L~~n~l~~--- 309 (390)
T 3o6n_A 244 L-LNYPGLVEVDLSYNELEKIMYHP----FVKMQRLERLYISNNRLVALN-----LYGQ-PIPTLKVLDLSHNHLLH--- 309 (390)
T ss_dssp G-GGCTTCSEEECCSSCCCEEESGG----GTTCSSCCEEECCSSCCCEEE-----CSSS-CCTTCCEEECCSSCCCC---
T ss_pred H-cCCCCccEEECCCCcCCCcChhH----ccccccCCEEECCCCcCcccC-----cccC-CCCCCCEEECCCCccee---
Confidence 2 23577777777777777654433 344477778888777776421 1112 56778888888887764
Q ss_pred HHHHHHHhcCCCccEEEecCCCCCHH
Q 008809 471 RQLAQVVIQKPGFKQLNIDANIISEE 496 (552)
Q Consensus 471 ~~l~~~l~~~~~L~~L~L~~N~i~~~ 496 (552)
++..+..+++|+.|++++|+|+..
T Consensus 310 --~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 310 --VERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp --CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred --cCccccccCcCCEEECCCCcccee
Confidence 233344567788888888877654
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.3e-22 Score=226.53 Aligned_cols=161 Identities=13% Similarity=0.115 Sum_probs=99.5
Q ss_pred ccCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCC-CCH-HHHHHHHHHH--HhhccCccEEEeccccC
Q 008809 131 STADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRS-FGL-EAARVAEPIL--VSINSQLKEVDLSDFVA 206 (552)
Q Consensus 131 ~~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~-l~~-~~~~~l~~~l--~~~~~~L~~L~Ls~~~~ 206 (552)
..+.++.++|+++.... .+...+... ++|+.|++++|. ++. .....+.... ....++|++|+|++|.+
T Consensus 489 ~L~~L~~L~Ls~N~l~~-------~iP~~l~~L-~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMT-------QLPDFLYDL-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp GCTTCCEEEEESCTTCC-------SCCGGGGGC-SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred cCCCCCEEECcCCCCCc-------cChHHHhCC-CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 56789999998865321 223445554 889999999998 875 3333333321 01125899999999988
Q ss_pred CCchH-HHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCC-
Q 008809 207 GRPEA-EALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEK- 284 (552)
Q Consensus 207 ~~~~~-~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~- 284 (552)
...+. ..+..+ ++|++|+|++|.++. ++ .+..+++|+.|+|++|.++. +...+..+++
T Consensus 561 ~~ip~~~~l~~L---------~~L~~L~Ls~N~l~~-----lp-~~~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~ 620 (876)
T 4ecn_A 561 EEFPASASLQKM---------VKLGLLDCVHNKVRH-----LE-AFGTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQ 620 (876)
T ss_dssp CBCCCHHHHTTC---------TTCCEEECTTSCCCB-----CC-CCCTTSEESEEECCSSCCSC-----CCTTSCEECTT
T ss_pred CccCChhhhhcC---------CCCCEEECCCCCccc-----ch-hhcCCCcceEEECcCCcccc-----chHHHhhcccc
Confidence 74322 133333 688888888888773 22 45566778888888887762 2223445566
Q ss_pred ccEEEcccCCCChHHHHHHHHHhhcCC--CccEEEeeCCCCC
Q 008809 285 LRVLQFHNNMTGDEGAQAISDVVKHSP--LLEDFRCSSTRIG 324 (552)
Q Consensus 285 L~~L~Ls~n~l~~~g~~~l~~~l~~~~--~L~~L~ls~n~l~ 324 (552)
|++|+|++|.+.. ++..+..++ +|+.|++++|++.
T Consensus 621 L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 621 VEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp CCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCEEECcCCCCCc-----CchhhhccccCCCCEEECcCCcCC
Confidence 7777777777663 443333332 2555555555554
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1e-22 Score=227.25 Aligned_cols=259 Identities=15% Similarity=0.207 Sum_probs=153.8
Q ss_pred cCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCC-CCH-HHHHHHHHH---HhcCCCccEEEeeCCCCC
Q 008809 194 SQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNA-LGE-KGVRAFGAL---LESQSSLEELYLMNDGIS 268 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~-l~~-~~~~~l~~~---l~~~~~L~~L~L~~n~i~ 268 (552)
++|++|+|++|.+....+..+..+ ++|++|+|++|+ ++. .....+..+ +..+++|+.|+|++|.++
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L---------~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDL---------PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGC---------SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred CCCCEEECcCCCCCccChHHHhCC---------CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 567777777776444333333222 577777777776 665 333333332 233446777777777776
Q ss_pred HHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCC-CCEEecC
Q 008809 269 KEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTH-LKKLDLR 347 (552)
Q Consensus 269 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls 347 (552)
.. +. ...+..+++|++|+|++|.+.. ++ .+..+++|+.|++++|++.. ++..+..+++ |+.|+|+
T Consensus 562 ~i-p~--~~~l~~L~~L~~L~Ls~N~l~~-----lp-~~~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 562 EF-PA--SASLQKMVKLGLLDCVHNKVRH-----LE-AFGTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp BC-CC--HHHHTTCTTCCEEECTTSCCCB-----CC-CCCTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECC
T ss_pred cc-CC--hhhhhcCCCCCEEECCCCCccc-----ch-hhcCCCcceEEECcCCcccc-----chHHHhhccccCCEEECc
Confidence 21 11 0134455677777777777764 44 56667777777777777763 5556666776 7777777
Q ss_pred CCCCChHHHHHHHHHHccCC--cccEEecCCCCCCchHHHHHHHHHh-cCCCCccEEEccCCCCCcchHHHHHHHhhcCC
Q 008809 348 DNMFGVEAGVALSKALSNYA--DLTEVYLSYLNLEDDGTVAITNALK-GSAPLLEVLELAGNDITVEAAPVISACVAAKQ 424 (552)
Q Consensus 348 ~n~l~~~~~~~L~~~l~~~~--~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 424 (552)
+|.++. ++..+...+ +|+.|++++|.+.+.... +...+. ..+++|+.|++++|.++.... .+ +..++
T Consensus 628 ~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~---~~~l~ 697 (876)
T 4ecn_A 628 HNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIGSEGRN-ISCSMDDYKGINASTVTLSYNEIQKFPT-EL---FATGS 697 (876)
T ss_dssp SSCCCS-----CCSCCCTTCSSCEEEEECCSSCTTTTSSS-CSSCTTTCCCCCEEEEECCSSCCCSCCH-HH---HHTTC
T ss_pred CCCCCc-----CchhhhccccCCCCEEECcCCcCCCcccc-chhhhccccCCCcCEEEccCCcCCccCH-HH---HccCC
Confidence 777763 344443333 377777777776542110 000000 013478888888888874332 22 23447
Q ss_pred CcCEEEccCCCCCchHHHHHHHHHhh-------CCCCccEEEccCCCCCHHHHHHHHHHHh--cCCCccEEEecCCCCCH
Q 008809 425 HLTKLNLAENELKDDGAIQISKALEQ-------GHDQLKVVDMSSNFIRRAGARQLAQVVI--QKPGFKQLNIDANIISE 495 (552)
Q Consensus 425 ~L~~L~Ls~n~l~d~g~~~l~~~L~~-------~~~~L~~L~Ls~n~i~~~g~~~l~~~l~--~~~~L~~L~L~~N~i~~ 495 (552)
+|+.|+|++|.|+.- ...+.. .+++|+.|+|++|.|+. ++..+. .+++|+.|+|++|.|+.
T Consensus 698 ~L~~L~Ls~N~L~~i-----p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 698 PISTIILSNNLMTSI-----PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CCSEEECCSCCCSCC-----CTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CCCEEECCCCcCCcc-----ChHHhccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc
Confidence 888888888877631 111110 12278888888888873 455554 67888888888888864
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.8e-23 Score=208.70 Aligned_cols=278 Identities=16% Similarity=0.145 Sum_probs=147.0
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
++++.|++++|.++......+. . .++|++|+|++|.+....+..+..+ ++|++|+|++|.++..
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~~L~Ls~n~l~~l-- 115 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFK----N-LKNLHTLILINNKISKISPGAFAPL---------VKLERLYLSKNQLKEL-- 115 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTT----T-CTTCCEEECCSSCCCCBCTTTTTTC---------TTCCEEECCSSCCSBC--
T ss_pred CCCeEEECCCCcCCEeChhhhc----c-CCCCCEEECCCCcCCeeCHHHhcCC---------CCCCEEECCCCcCCcc--
Confidence 5677777777776532221111 1 2567777777776665433333222 5677777777766532
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCC
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~ 324 (552)
+..+ .++|++|++++|.++..... .+..+++|++|++++|.+...+. .+..+..+++|+.|++++|.++
T Consensus 116 ---~~~~--~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 116 ---PEKM--PKTLQELRVHENEITKVRKS----VFNGLNQMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp ---CSSC--CTTCCEEECCSSCCCBBCHH----HHTTCTTCCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCC
T ss_pred ---Chhh--cccccEEECCCCcccccCHh----HhcCCccccEEECCCCcCCccCc--ChhhccCCCCcCEEECCCCccc
Confidence 1111 14677777777766543322 23445667777777776654221 2234556667777777777665
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEcc
Q 008809 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELA 404 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 404 (552)
. ++..+ .++|+.|++++|.++... +..+..+++|+.|++++|.++......+ ..+++|++|+++
T Consensus 185 ~-----l~~~~--~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~ 248 (330)
T 1xku_A 185 T-----IPQGL--PPSLTELHLDGNKITKVD----AASLKGLNNLAKLGLSFNSISAVDNGSL-----ANTPHLRELHLN 248 (330)
T ss_dssp S-----CCSSC--CTTCSEEECTTSCCCEEC----TGGGTTCTTCCEEECCSSCCCEECTTTG-----GGSTTCCEEECC
T ss_pred c-----CCccc--cccCCEEECCCCcCCccC----HHHhcCCCCCCEEECCCCcCceeChhhc-----cCCCCCCEEECC
Confidence 3 22222 256777777777666421 3445666677777777776665332212 125667777777
Q ss_pred CCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHh-hCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCc
Q 008809 405 GNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALE-QGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGF 483 (552)
Q Consensus 405 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~-~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L 483 (552)
+|.++.. + ..+..+++|+.|+|++|.|+..+...++.... .....|+.|++++|.+.... ..+..+..++.|
T Consensus 249 ~N~l~~l-p----~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~--i~~~~f~~~~~l 321 (330)
T 1xku_A 249 NNKLVKV-P----GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE--IQPSTFRCVYVR 321 (330)
T ss_dssp SSCCSSC-C----TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG--SCGGGGTTCCCG
T ss_pred CCcCccC-C----hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc--cCccccccccce
Confidence 7766531 1 12344566777777777666543332221000 01355666777777665321 112334445666
Q ss_pred cEEEecCCC
Q 008809 484 KQLNIDANI 492 (552)
Q Consensus 484 ~~L~L~~N~ 492 (552)
+.++|++|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 677766663
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=3.9e-23 Score=207.64 Aligned_cols=276 Identities=18% Similarity=0.204 Sum_probs=206.4
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
.+++.++++++.+... ....++.++.|+|++|.+.......+..+ ++|++|+|++|.++...
T Consensus 31 c~l~~l~~~~~~l~~l--------p~~~~~~l~~L~L~~n~i~~~~~~~~~~l---------~~L~~L~L~~n~l~~~~- 92 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKV--------PKDLPPDTALLDLQNNKITEIKDGDFKNL---------KNLHTLILINNKISKIS- 92 (330)
T ss_dssp EETTEEECTTSCCCSC--------CCSCCTTCCEEECCSSCCCCBCTTTTTTC---------TTCCEEECCSSCCCCBC-
T ss_pred CCCeEEEecCCCcccc--------CccCCCCCeEEECCCCcCCEeChhhhccC---------CCCCEEECCCCcCCeeC-
Confidence 3688999999887531 12234789999999999887655444333 79999999999988642
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCC
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~ 324 (552)
+..+..+++|++|++++|.++... . ...++|++|++++|.+... .+..+..+++|+.|++++|.+.
T Consensus 93 ---~~~~~~l~~L~~L~Ls~n~l~~l~-----~--~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 93 ---PGAFAPLVKLERLYLSKNQLKELP-----E--KMPKTLQELRVHENEITKV----RKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCSBCC-----S--SCCTTCCEEECCSSCCCBB----CHHHHTTCTTCCEEECCSSCCC
T ss_pred ---HHHhcCCCCCCEEECCCCcCCccC-----h--hhcccccEEECCCCccccc----CHhHhcCCccccEEECCCCcCC
Confidence 334566799999999999986421 1 1137899999999999862 2345778999999999999987
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEcc
Q 008809 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELA 404 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 404 (552)
..+. .+..+..+++|+.|++++|.++. ++..+ .++|+.|++++|.++......+ ..+++|+.|+++
T Consensus 159 ~~~~--~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls 224 (330)
T 1xku_A 159 SSGI--ENGAFQGMKKLSYIRIADTNITT-----IPQGL--PPSLTELHLDGNKITKVDAASL-----KGLNNLAKLGLS 224 (330)
T ss_dssp GGGB--CTTGGGGCTTCCEEECCSSCCCS-----CCSSC--CTTCSEEECTTSCCCEECTGGG-----TTCTTCCEEECC
T ss_pred ccCc--ChhhccCCCCcCEEECCCCcccc-----CCccc--cccCCEEECCCCcCCccCHHHh-----cCCCCCCEEECC
Confidence 5322 34567889999999999999875 23322 3799999999999987543333 237899999999
Q ss_pred CCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHH--hcCCC
Q 008809 405 GNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVV--IQKPG 482 (552)
Q Consensus 405 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l--~~~~~ 482 (552)
+|.++...+.. +..+++|+.|+|++|.++. ++..+. .+++|+.|++++|.|+..+...+.... ...+.
T Consensus 225 ~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~-----lp~~l~-~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 225 FNSISAVDNGS----LANTPHLRELHLNNNKLVK-----VPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp SSCCCEECTTT----GGGSTTCCEEECCSSCCSS-----CCTTTT-TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred CCcCceeChhh----ccCCCCCCEEECCCCcCcc-----CChhhc-cCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 99998765433 4556999999999999873 334455 789999999999999876544432211 12478
Q ss_pred ccEEEecCCCCCHH
Q 008809 483 FKQLNIDANIISEE 496 (552)
Q Consensus 483 L~~L~L~~N~i~~~ 496 (552)
|+.|++++|++...
T Consensus 295 l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 295 YSGVSLFSNPVQYW 308 (330)
T ss_dssp CSEEECCSSSSCGG
T ss_pred ccceEeecCccccc
Confidence 99999999998753
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=1.7e-23 Score=228.89 Aligned_cols=296 Identities=13% Similarity=0.154 Sum_probs=175.7
Q ss_pred hhCCCCCceEEEecCCCCCHH-------------HHHHHHHHHH-hhccCccEEEeccccCCCchHHHHHHHHHHHHHhc
Q 008809 160 LKEPGNSYTKICFSNRSFGLE-------------AARVAEPILV-SINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALE 225 (552)
Q Consensus 160 l~~~~~~l~~L~ls~~~l~~~-------------~~~~l~~~l~-~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~ 225 (552)
+... ++|+.|++++|.++.. ....+...+. ...++|++|+|++|.+....+..+..+
T Consensus 202 l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-------- 272 (636)
T 4eco_A 202 VMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-------- 272 (636)
T ss_dssp GGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC--------
T ss_pred Hhcc-cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC--------
Confidence 3344 7788888888887641 0000111111 013678888888887654434333322
Q ss_pred CCCccEEEcCCCC-CCH-HHHHHHHHH--HhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCC-hHHH
Q 008809 226 GSVLKSLNLSDNA-LGE-KGVRAFGAL--LESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTG-DEGA 300 (552)
Q Consensus 226 ~~~L~~L~Ls~n~-l~~-~~~~~l~~~--l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~g~ 300 (552)
++|++|+|++|+ ++. .....+..+ +..+++|+.|++++|.++. .+. ...+..+++|++|++++|.+. .
T Consensus 273 -~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~--~~~l~~l~~L~~L~L~~N~l~g~--- 345 (636)
T 4eco_A 273 -PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPV--ETSLQKMKKLGMLECLYNQLEGK--- 345 (636)
T ss_dssp -SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCC--HHHHTTCTTCCEEECCSCCCEEE---
T ss_pred -CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCc--hhhhccCCCCCEEeCcCCcCccc---
Confidence 688888888887 776 433333332 2334778888888888762 111 013455678888888888876 4
Q ss_pred HHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCC-CCEEecCCCCCChHHHHHHHHHHccC--CcccEEecCCC
Q 008809 301 QAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTH-LKKLDLRDNMFGVEAGVALSKALSNY--ADLTEVYLSYL 377 (552)
Q Consensus 301 ~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~L~~~l~~~--~~L~~L~L~~n 377 (552)
++ .+..+++|+.|++++|+++. ++..+..+++ |+.|++++|.++. ++..+... ++|+.|++++|
T Consensus 346 --ip-~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 346 --LP-AFGSEIKLASLNLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp --CC-CCEEEEEESEEECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSS
T ss_pred --hh-hhCCCCCCCEEECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcCC
Confidence 44 56667778888888887763 5666777777 8888888888773 34444443 37888888888
Q ss_pred CCCchHHHHHHHHH--hcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHH---HhhCC
Q 008809 378 NLEDDGTVAITNAL--KGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKA---LEQGH 452 (552)
Q Consensus 378 ~l~~~~~~~l~~~l--~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~---L~~~~ 452 (552)
.+....+..+.... ...+++|+.|++++|.++.... .+ +..+++|+.|+|++|.++.-....+... +. .+
T Consensus 413 ~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~---~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~-~l 487 (636)
T 4eco_A 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-EL---FSTGSPLSSINLMGNMLTEIPKNSLKDENENFK-NT 487 (636)
T ss_dssp CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-HH---HHTTCCCSEEECCSSCCSBCCSSSSEETTEECT-TG
T ss_pred cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH-HH---HccCCCCCEEECCCCCCCCcCHHHhcccccccc-cc
Confidence 77653322221000 0024578888888888774332 22 2234778888888877763111000000 00 11
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHHh--cCCCccEEEecCCCCC
Q 008809 453 DQLKVVDMSSNFIRRAGARQLAQVVI--QKPGFKQLNIDANIIS 494 (552)
Q Consensus 453 ~~L~~L~Ls~n~i~~~g~~~l~~~l~--~~~~L~~L~L~~N~i~ 494 (552)
++|+.|+|++|.|+. ++..+. .+++|+.|+|++|.|+
T Consensus 488 ~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 488 YLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp GGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCS
T ss_pred CCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCC
Confidence 277777777777763 444444 5777777777777776
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=9e-23 Score=221.65 Aligned_cols=276 Identities=21% Similarity=0.193 Sum_probs=196.1
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
.+++.+++++|.++.....++..+ ++|+.|+|++|.+....+..+..+ ++|++|+|++|.++....
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSF-----RQVELLNLNDLQIEEIDTYAFAYA---------HTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHC-----CCCSEEECTTSCCCEECTTTTTTC---------TTCCEEECCSSCCCCCCT
T ss_pred CCceEEEeeCCCCCCcCHHHHccC-----CCCcEEECCCCCCCCCChHHhcCC---------CCCCEEECCCCcCCCCCH
Confidence 678999999999876554444333 899999999999887655444333 799999999999887432
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCC
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~ 324 (552)
..+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|.+... .+..+..+++|+.|++++|.++
T Consensus 117 ----~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 117 ----HVFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTSCCS
T ss_pred ----HHHcCCCCCCEEEeeCCCCCCCCH----HHhccCCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCCCCC
Confidence 345667999999999999874321 2246679999999999998761 2345788999999999999988
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHH--------------HHHHHHccCCcccEEecCCCCCCchHHHHHHHH
Q 008809 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGV--------------ALSKALSNYADLTEVYLSYLNLEDDGTVAITNA 390 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~--------------~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 390 (552)
..+ +..+++|+.|++++|.++.-... .++. ...++|+.|++++|.+++. ..
T Consensus 185 ~~~-------~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~------~~ 249 (597)
T 3oja_B 185 HVD-------LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT------AW 249 (597)
T ss_dssp BCC-------GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCCC------GG
T ss_pred CcC-------hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCCC------hh
Confidence 632 44556666666666655431000 0000 1124677777888777763 11
Q ss_pred HhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHH
Q 008809 391 LKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGA 470 (552)
Q Consensus 391 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~ 470 (552)
+ ..+++|+.|+|++|.++...+.. +..+++|+.|+|++|.++.. ...+. .+++|+.|+|++|.++.
T Consensus 250 l-~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~l-----~~~~~-~l~~L~~L~Ls~N~l~~--- 315 (597)
T 3oja_B 250 L-LNYPGLVEVDLSYNELEKIMYHP----FVKMQRLERLYISNNRLVAL-----NLYGQ-PIPTLKVLDLSHNHLLH--- 315 (597)
T ss_dssp G-GGCTTCSEEECCSSCCCEEESGG----GTTCSSCCEEECTTSCCCEE-----ECSSS-CCTTCCEEECCSSCCCC---
T ss_pred h-ccCCCCCEEECCCCccCCCCHHH----hcCccCCCEEECCCCCCCCC-----Ccccc-cCCCCcEEECCCCCCCc---
Confidence 2 23688999999999988765544 44458899999999988752 11122 57899999999998874
Q ss_pred HHHHHHHhcCCCccEEEecCCCCCHHH
Q 008809 471 RQLAQVVIQKPGFKQLNIDANIISEEG 497 (552)
Q Consensus 471 ~~l~~~l~~~~~L~~L~L~~N~i~~~g 497 (552)
++..+..+++|+.|+|++|.|+...
T Consensus 316 --i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 316 --VERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp --CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred --cCcccccCCCCCEEECCCCCCCCcC
Confidence 3444556889999999999987543
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=7.2e-23 Score=223.83 Aligned_cols=311 Identities=15% Similarity=0.169 Sum_probs=158.7
Q ss_pred ccCCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCC-CCH-HHHHHHHHHH-HhhccCccEEEeccccCC
Q 008809 131 STADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRS-FGL-EAARVAEPIL-VSINSQLKEVDLSDFVAG 207 (552)
Q Consensus 131 ~~~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~-l~~-~~~~~l~~~l-~~~~~~L~~L~Ls~~~~~ 207 (552)
....++++++++..... .+...+... ++|+.|++++|. ++. .....+.... ....++|++|+|++|.+.
T Consensus 247 ~l~~L~~L~L~~n~l~~-------~~p~~l~~l-~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT-------KLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp GCTTCCEEEEECCTTCS-------SCCTTTTTC-SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred ccCCCCEEEecCCcCCc-------cChHHHhcC-CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 67889999999875331 223445544 889999999998 875 3333333320 011278999999999887
Q ss_pred CchH-HHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCC-c
Q 008809 208 RPEA-EALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEK-L 285 (552)
Q Consensus 208 ~~~~-~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L 285 (552)
..+. ..+..+ ++|++|++++|.+... ++ .+..+++|+.|++++|.++ .+...+..+++ |
T Consensus 319 ~ip~~~~l~~l---------~~L~~L~L~~N~l~g~----ip-~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~~L 379 (636)
T 4eco_A 319 TFPVETSLQKM---------KKLGMLECLYNQLEGK----LP-AFGSEIKLASLNLAYNQIT-----EIPANFCGFTEQV 379 (636)
T ss_dssp SCCCHHHHTTC---------TTCCEEECCSCCCEEE----CC-CCEEEEEESEEECCSSEEE-----ECCTTSEEECTTC
T ss_pred ccCchhhhccC---------CCCCEEeCcCCcCccc----hh-hhCCCCCCCEEECCCCccc-----cccHhhhhhcccC
Confidence 4332 133333 5788888888877622 11 3333455555555555543 11112233344 5
Q ss_pred cEEEcccCCCChHHHHHHHHHhh---------------------------------cCCCccEEEeeCCCCChHHHHHHH
Q 008809 286 RVLQFHNNMTGDEGAQAISDVVK---------------------------------HSPLLEDFRCSSTRIGSEGGTALS 332 (552)
Q Consensus 286 ~~L~Ls~n~l~~~g~~~l~~~l~---------------------------------~~~~L~~L~ls~n~l~~~~~~~l~ 332 (552)
++|++++|.+.. ++..+. .+++|+.|++++|+++. ++
T Consensus 380 ~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-----lp 449 (636)
T 4eco_A 380 ENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-----FP 449 (636)
T ss_dssp CEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-----CC
T ss_pred cEEEccCCcCcc-----cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-----CC
Confidence 555555555442 332222 33345555555555442 22
Q ss_pred HH-hhcCCCCCEEecCCCCCChHHHHHHHHHHcc--------CCcccEEecCCCCCCchHHHHHHHHHh-cCCCCccEEE
Q 008809 333 EA-LESCTHLKKLDLRDNMFGVEAGVALSKALSN--------YADLTEVYLSYLNLEDDGTVAITNALK-GSAPLLEVLE 402 (552)
Q Consensus 333 ~~-l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~--------~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~~L~~L~ 402 (552)
.. +..+++|+.|+|++|.++. ++..+.. +++|+.|++++|.++. +...+. ..+++|+.|+
T Consensus 450 ~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 450 KELFSTGSPLSSINLMGNMLTE-----IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGID 519 (636)
T ss_dssp THHHHTTCCCSEEECCSSCCSB-----CCSSSSEETTEECTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEE
T ss_pred HHHHccCCCCCEEECCCCCCCC-----cCHHHhccccccccccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEE
Confidence 22 2234555555555555542 1211111 1155556666555552 122221 1245666666
Q ss_pred ccCCCCCcchHHHHHHHhhcCCCcCEEEccC------CCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHH
Q 008809 403 LAGNDITVEAAPVISACVAAKQHLTKLNLAE------NELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQV 476 (552)
Q Consensus 403 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~------n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 476 (552)
|++|.++. .+. .+..+++|+.|+|++ |.+... ++..+. .+++|+.|+|++|.|+. ++..
T Consensus 520 Ls~N~l~~-ip~----~~~~l~~L~~L~Ls~N~~ls~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~~-----ip~~ 584 (636)
T 4eco_A 520 LSYNSFSK-FPT----QPLNSSTLKGFGIRNQRDAQGNRTLRE----WPEGIT-LCPSLTQLQIGSNDIRK-----VNEK 584 (636)
T ss_dssp CCSSCCSS-CCC----GGGGCSSCCEEECCSCBCTTCCBCCCC----CCTTGG-GCSSCCEEECCSSCCCB-----CCSC
T ss_pred CCCCCCCC-cCh----hhhcCCCCCEEECCCCcccccCccccc----ChHHHh-cCCCCCEEECCCCcCCc-----cCHh
Confidence 66666554 221 233346666666633 333321 122333 56666666666666643 2222
Q ss_pred HhcCCCccEEEecCCCCCHHHHHHHHHHH
Q 008809 477 VIQKPGFKQLNIDANIISEEGIDEVKEIF 505 (552)
Q Consensus 477 l~~~~~L~~L~L~~N~i~~~g~~~l~~~l 505 (552)
+ .++|+.|+|++|++..-++..+...+
T Consensus 585 ~--~~~L~~L~Ls~N~l~~~~~~~~~~~~ 611 (636)
T 4eco_A 585 I--TPNISVLDIKDNPNISIDLSYVCPYI 611 (636)
T ss_dssp C--CTTCCEEECCSCTTCEEECTTTHHHH
T ss_pred H--hCcCCEEECcCCCCccccHHhcchhh
Confidence 2 25666667766666654444433333
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=5.1e-23 Score=224.20 Aligned_cols=165 Identities=21% Similarity=0.208 Sum_probs=78.8
Q ss_pred hcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHH
Q 008809 308 KHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAI 387 (552)
Q Consensus 308 ~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l 387 (552)
..+++|+.|++++|.++. ++..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+......
T Consensus 275 ~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~-- 343 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSE-----LPSGLVGLSTLKKLVLSANKFENL----CQISASNFPSLTHLSIKGNTKRLELGT-- 343 (606)
T ss_dssp TTCTTCSEEECTTSCCSC-----CCSSCCSCTTCCEEECTTCCCSBG----GGGCGGGCTTCSEEECCSCSSCCBCCS--
T ss_pred ccccCCCEEeccCCccCC-----CChhhcccccCCEEECccCCcCcC----chhhhhccCcCCEEECCCCCcccccch--
Confidence 334445555555554442 333444445555555555554432 122344455555555555543311100
Q ss_pred HHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCH
Q 008809 388 TNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRR 467 (552)
Q Consensus 388 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~ 467 (552)
.....+++|++|++++|.++.... ....+..+++|++|++++|.++.... ..+. .+++|+.|++++|.++.
T Consensus 344 --~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~-~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 344 --GCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSLKT----EAFK-ECPQLELLDLAFTRLKV 414 (606)
T ss_dssp --STTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEECT----TTTT-TCTTCSEEECTTCCEEC
T ss_pred --hhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcCCH----HHhc-CCccCCeEECCCCcCCC
Confidence 001124556666666666554320 00113344666666666666554222 2222 56667777777776543
Q ss_pred HHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008809 468 AGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 468 ~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
... ...+..+++|+.|++++|.++.
T Consensus 415 ~~~---~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 415 KDA---QSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp CTT---CCTTTTCTTCCEEECTTCCCBT
T ss_pred ccc---chhhhCcccCCEEECCCCccCC
Confidence 210 1124456677777777777654
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=6.7e-21 Score=204.90 Aligned_cols=136 Identities=18% Similarity=0.162 Sum_probs=72.6
Q ss_pred CCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHH
Q 008809 133 ADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAE 212 (552)
Q Consensus 133 ~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~ 212 (552)
+.++++|+++.....+. ...+... +++++|++++|.++......+.. .++|++|+|++|.+....+.
T Consensus 26 ~~L~~L~Ls~n~l~~~~-------~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-------HGDLRAC-ANLQVLILKSSRINTIEGDAFYS-----LGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSCCCEEC-------SSTTSSC-TTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECTTSCCCSCCHH
T ss_pred CCccEEECcCCccCccC-------hhhhhcC-CcccEEECCCCCcCccChhhccc-----cccCCEEECCCCccCccCHH
Confidence 45677777776544321 1223333 67777777777765322221111 25677777777777665544
Q ss_pred HHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCC-CCHHHHHHHHHhcCCCCCccEEEcc
Q 008809 213 ALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDG-ISKEAARAVCELIPSTEKLRVLQFH 291 (552)
Q Consensus 213 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls 291 (552)
.+..+ ++|++|++++|.++..+ +...+..+++|++|++++|. ++.... ..+..+++|++|+++
T Consensus 93 ~~~~l---------~~L~~L~Ls~n~l~~~~---~~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 93 WFGPL---------SSLKYLNLMGNPYQTLG---VTSLFPNLTNLQTLRIGNVETFSEIRR----IDFAGLTSLNELEIK 156 (549)
T ss_dssp HHTTC---------TTCCEEECTTCCCSSSC---SSCSCTTCTTCCEEEEEESSSCCEECT----TTTTTCCEEEEEEEE
T ss_pred HhccC---------CCCcEEECCCCcccccc---hhhhhhccCCccEEECCCCccccccCH----hhhhcccccCeeecc
Confidence 34333 57777777777665321 11234455667777776665 322110 123445566666666
Q ss_pred cCCCCh
Q 008809 292 NNMTGD 297 (552)
Q Consensus 292 ~n~l~~ 297 (552)
+|.+..
T Consensus 157 ~n~l~~ 162 (549)
T 2z81_A 157 ALSLRN 162 (549)
T ss_dssp ETTCCE
T ss_pred CCcccc
Confidence 665543
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=1.8e-22 Score=219.85 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=55.2
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHH
Q 008809 395 APLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLA 474 (552)
Q Consensus 395 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~ 474 (552)
+++|++|++++|.++...+.. +..+++|++|+|++|.+++..+ ..+. .+++|+.|+|++|.|+. ++
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~----~~~~-~l~~L~~L~l~~N~l~~-----~p 537 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGV----FDTLHRLQLLNMSHNNLLFLDS----SHYN-QLYSLSTLDCSFNRIET-----SK 537 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSCEEG----GGTT-TCTTCCEEECTTSCCCC-----EE
T ss_pred CCCCCEEECCCCcCCccChhh----hcccccCCEEECCCCcCCCcCH----HHcc-CCCcCCEEECCCCcCcc-----cC
Confidence 456666666666665543322 3334666666666666655322 2223 56667777777776653 33
Q ss_pred HHHhcCC-CccEEEecCCCCCH-HHHHHHHHHHhcC
Q 008809 475 QVVIQKP-GFKQLNIDANIISE-EGIDEVKEIFKNS 508 (552)
Q Consensus 475 ~~l~~~~-~L~~L~L~~N~i~~-~g~~~l~~~l~~~ 508 (552)
..+..++ +|+.|++++|++.. .....+.+.++.+
T Consensus 538 ~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~ 573 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQ 573 (606)
T ss_dssp SCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTS
T ss_pred HhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcC
Confidence 3344555 47777777777652 4444444444443
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=3.9e-21 Score=207.33 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=78.6
Q ss_pred hcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHH
Q 008809 336 ESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPV 415 (552)
Q Consensus 336 ~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 415 (552)
..+++|+.|++++|.++.. ++..+..+++|+.|++++|.++.... ++..+ ..+++|+.|++++|.++...+..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~-~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNFFK--VALMT-KNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBTTH--HHHTT-TTCTTCCEEECTTSCCBSCCSSC
T ss_pred cCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCccc--chhhh-cCCCCCCEEECCCCcCCCccChh
Confidence 3455666666666666542 23445556666666666666654211 11111 12455555555555554311110
Q ss_pred -HH-----------------HHhhcC-CCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHH
Q 008809 416 -IS-----------------ACVAAK-QHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQV 476 (552)
Q Consensus 416 -l~-----------------~~l~~~-~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 476 (552)
+. ...... ++|+.|+|++|.|+. +...+. .+++|+.|+|++|.|+. ++..
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~-----ip~~~~-~l~~L~~L~L~~N~l~~-----l~~~ 491 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-----IPKDVT-HLQALQELNVASNQLKS-----VPDG 491 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC-----CCTTTT-SSCCCSEEECCSSCCCC-----CCTT
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc-----cChhhc-CCCCCCEEECCCCCCCC-----CCHH
Confidence 00 001111 466777777776652 233344 67788888888888874 2332
Q ss_pred -HhcCCCccEEEecCCCCCH
Q 008809 477 -VIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 477 -l~~~~~L~~L~L~~N~i~~ 495 (552)
+..+++|+.|++++|+++.
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp STTTCTTCCCEECCSCCBCC
T ss_pred HHhcCCCCCEEEecCCCcCC
Confidence 5668888999999998774
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=1.9e-20 Score=201.43 Aligned_cols=191 Identities=18% Similarity=0.198 Sum_probs=114.3
Q ss_pred CCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHH
Q 008809 283 EKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKA 362 (552)
Q Consensus 283 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~ 362 (552)
++|++|++++|.+....... +..+..+++|+.|++++|+++.... ....+..+++|+.|++++|.++. ++..
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~ 405 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQK--TGEILLTLKNLTSLDISRNTFHP-----MPDS 405 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHH--HHHHGGGCTTCCEEECTTCCCCC-----CCSC
T ss_pred ccccEEEccCCccccccccc-hhhhhccccCcEEEccCCccccccc--chhhhhcCCCCCEEECCCCCCcc-----CChh
Confidence 55666666666655421100 1113445566666666666554210 11335556666666666666553 3444
Q ss_pred HccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHH
Q 008809 363 LSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAI 442 (552)
Q Consensus 363 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~ 442 (552)
+..+++|+.|++++|.+.... ..+ .++|++|++++|.++.. ...+++|+.|+|++|.|+.-
T Consensus 406 ~~~~~~L~~L~Ls~N~l~~l~-----~~~---~~~L~~L~Ls~N~l~~~--------~~~l~~L~~L~Ls~N~l~~i--- 466 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTGIRVVK-----TCI---PQTLEVLDVSNNNLDSF--------SLFLPRLQELYISRNKLKTL--- 466 (549)
T ss_dssp CCCCTTCCEEECTTSCCSCCC-----TTS---CTTCSEEECCSSCCSCC--------CCCCTTCCEEECCSSCCSSC---
T ss_pred hcccccccEEECCCCCccccc-----chh---cCCceEEECCCCChhhh--------cccCChhcEEECCCCccCcC---
Confidence 455566666666666654311 000 24677777777777653 13568999999999988731
Q ss_pred HHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHHH--HHHHHHHHhcC
Q 008809 443 QISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEG--IDEVKEIFKNS 508 (552)
Q Consensus 443 ~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g--~~~l~~~l~~~ 508 (552)
.. .. .+++|+.|+|++|.++.. .+..+..+++|+.|++++|+++..- ...+...++.+
T Consensus 467 --p~-~~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~ 526 (549)
T 2z81_A 467 --PD-AS-LFPVLLVMKISRNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 526 (549)
T ss_dssp --CC-GG-GCTTCCEEECCSSCCCCC----CTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHC
T ss_pred --CC-cc-cCccCCEEecCCCccCCc----CHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhc
Confidence 11 22 688999999999999864 2344667999999999999976432 44555566554
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=3.6e-23 Score=208.14 Aligned_cols=271 Identities=16% Similarity=0.201 Sum_probs=139.4
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHH
Q 008809 166 SYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVR 245 (552)
Q Consensus 166 ~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~ 245 (552)
+++.++++++.+.... ....++|+.|+|++|.+....+..+..+ ++|++|+|++|.++...
T Consensus 34 ~l~~l~~~~~~l~~ip--------~~~~~~l~~L~l~~n~i~~~~~~~~~~l---------~~L~~L~L~~n~l~~~~-- 94 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP--------KEISPDTTLLDLQNNDISELRKDDFKGL---------QHLYALVLVNNKISKIH-- 94 (332)
T ss_dssp ETTEEECCSSCCSSCC--------SCCCTTCCEEECCSSCCCEECTTTTTTC---------TTCCEEECCSSCCCEEC--
T ss_pred cCCEEECCCCCccccC--------CCCCCCCeEEECCCCcCCccCHhHhhCC---------CCCcEEECCCCccCccC--
Confidence 4666666666654211 1112466666666666654433322222 56666666666666432
Q ss_pred HHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHH-HHhhcCCCccEEEeeCCCCC
Q 008809 246 AFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAIS-DVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 246 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~ls~n~l~ 324 (552)
...+..+++|++|++++|.++... ..+ .++|++|++++|.+.. ++ ..+..+++|+.|++++|.++
T Consensus 95 --~~~~~~l~~L~~L~L~~n~l~~l~-----~~~--~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 95 --EKAFSPLRKLQKLYISKNHLVEIP-----PNL--PSSLVELRIHDNRIRK-----VPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp --GGGSTTCTTCCEEECCSSCCCSCC-----SSC--CTTCCEEECCSSCCCC-----CCSGGGSSCSSCCEEECCSCCCB
T ss_pred --HhHhhCcCCCCEEECCCCcCCccC-----ccc--cccCCEEECCCCccCc-----cCHhHhCCCccCCEEECCCCccc
Confidence 223444566666666666664211 111 2566666666666654 22 23455666666666666664
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEcc
Q 008809 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELA 404 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 404 (552)
..+. .+..+..+ +|+.|++++|.++. ++..+ .++|+.|++++|.+.......+ ..+++|++|+++
T Consensus 161 ~~~~--~~~~~~~l-~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~~~~~l-----~~l~~L~~L~L~ 225 (332)
T 2ft3_A 161 NSGF--EPGAFDGL-KLNYLRISEAKLTG-----IPKDL--PETLNELHLDHNKIQAIELEDL-----LRYSKLYRLGLG 225 (332)
T ss_dssp GGGS--CTTSSCSC-CCSCCBCCSSBCSS-----CCSSS--CSSCSCCBCCSSCCCCCCTTSS-----TTCTTCSCCBCC
T ss_pred cCCC--CcccccCC-ccCEEECcCCCCCc-----cCccc--cCCCCEEECCCCcCCccCHHHh-----cCCCCCCEEECC
Confidence 3211 12233333 66666666666654 22221 2466666666666654322211 124566666666
Q ss_pred CCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHH--hcCCC
Q 008809 405 GNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVV--IQKPG 482 (552)
Q Consensus 405 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l--~~~~~ 482 (552)
+|.++...+.. +..+++|+.|+|++|.++. ++..+. .+++|+.|++++|.|+..+...+.... ...+.
T Consensus 226 ~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~-----lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 226 HNQIRMIENGS----LSFLPTLRELHLDNNKLSR-----VPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp SSCCCCCCTTG----GGGCTTCCEEECCSSCCCB-----CCTTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCcCCcCChhH----hhCCCCCCEEECCCCcCee-----cChhhh-cCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 66665543322 3334666666666666652 122233 566666666666666554333222110 01345
Q ss_pred ccEEEecCCCCC
Q 008809 483 FKQLNIDANIIS 494 (552)
Q Consensus 483 L~~L~L~~N~i~ 494 (552)
|+.|++++|+++
T Consensus 296 l~~L~l~~N~~~ 307 (332)
T 2ft3_A 296 YNGISLFNNPVP 307 (332)
T ss_dssp BSEEECCSSSSC
T ss_pred ccceEeecCccc
Confidence 666666666665
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.7e-21 Score=208.12 Aligned_cols=317 Identities=17% Similarity=0.102 Sum_probs=182.1
Q ss_pred CCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHH
Q 008809 133 ADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAE 212 (552)
Q Consensus 133 ~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~ 212 (552)
+.++++|+++.....+.. ..+... ++++.|++++|.++......+.. .++|++|+|++|.+...+..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~-------~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT-------SDILSL-SKLRILIISHNRIQYLDISVFKF-----NQELEYLDLSHNKLVKISCH 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCH-------HHHTTC-TTCCEEECCSSCCCEEEGGGGTT-----CTTCCEEECCSSCCCEEECC
T ss_pred ccccEEECCCCcccccCh-------hhcccc-ccccEEecCCCccCCcChHHhhc-----ccCCCEEecCCCceeecCcc
Confidence 788999999887654332 223333 88999999999886432222222 37899999999988754432
Q ss_pred HHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCc--cEEEc
Q 008809 213 ALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKL--RVLQF 290 (552)
Q Consensus 213 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L--~~L~L 290 (552)
..++|++|+|++|.++... ++..++.+++|++|++++|.|+... +..+++| ++|++
T Consensus 88 ------------~l~~L~~L~L~~N~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 88 ------------PTVNLKHLDLSFNAFDALP---ICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVLL 145 (520)
T ss_dssp ------------CCCCCSEEECCSSCCSSCC---CCGGGGGCTTCCEEEEEESSCCGGG-------GGGGTTSCEEEEEE
T ss_pred ------------ccCCccEEeccCCcccccc---chhhhccCCcceEEEecCcccchhh-------ccccccceeeEEEe
Confidence 1278999999999887521 2234566789999999999987632 3334566 99999
Q ss_pred ccCCC--ChHHHHHHHH----------------------HhhcCCCccEEEeeCCC--CChHHHHHHHHHhhcCCCCCEE
Q 008809 291 HNNMT--GDEGAQAISD----------------------VVKHSPLLEDFRCSSTR--IGSEGGTALSEALESCTHLKKL 344 (552)
Q Consensus 291 s~n~l--~~~g~~~l~~----------------------~l~~~~~L~~L~ls~n~--l~~~~~~~l~~~l~~~~~L~~L 344 (552)
++|.+ .......+.. .+..+++|+.|++++|. ............+..+++|+.|
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L 225 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhc
Confidence 98877 2110000110 01123344444444443 0000111111234444444444
Q ss_pred ecCCCCCChHHHHHHH-----------------------HHH-----ccCCcccEEecCCCCCCchHHHHHHHHHh----
Q 008809 345 DLRDNMFGVEAGVALS-----------------------KAL-----SNYADLTEVYLSYLNLEDDGTVAITNALK---- 392 (552)
Q Consensus 345 ~Ls~n~l~~~~~~~L~-----------------------~~l-----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~---- 392 (552)
++++|.++......+. ..+ ..+++|+.+++++|.+.- ....+...+.
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~-p~~~~~~~~~~~~L 304 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF-PQSYIYEIFSNMNI 304 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCS-CTHHHHHHHHTCCC
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceec-chhhhhcccccCce
Confidence 4444444443333222 223 445555555555555411 1022222211
Q ss_pred ----------------cCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCcc
Q 008809 393 ----------------GSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLK 456 (552)
Q Consensus 393 ----------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~ 456 (552)
..+++|++|++++|.+++..+.. +..+++|+.|+|++|.++.. ..++..+. .+++|+
T Consensus 305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l--~~~~~~~~-~l~~L~ 377 (520)
T 2z7x_B 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN----CGHLTELETLILQMNQLKEL--SKIAEMTT-QMKSLQ 377 (520)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTT----CCCCSSCCEEECCSSCCCBH--HHHHHHHT-TCTTCC
T ss_pred eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhh----hccCCCCCEEEccCCccCcc--ccchHHHh-hCCCCC
Confidence 23567788888888777644322 34557888888888887652 23344555 778888
Q ss_pred EEEccCCCCCHHHHHHHHH-HHhcCCCccEEEecCCCCCHH
Q 008809 457 VVDMSSNFIRRAGARQLAQ-VVIQKPGFKQLNIDANIISEE 496 (552)
Q Consensus 457 ~L~Ls~n~i~~~g~~~l~~-~l~~~~~L~~L~L~~N~i~~~ 496 (552)
.|++++|.++.. ++. .+..+++|+.|++++|.+++.
T Consensus 378 ~L~Ls~N~l~~~----l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 378 QLDISQNSVSYD----EKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp EEECCSSCCBCC----GGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred EEECCCCcCCcc----cccchhccCccCCEEECcCCCCCcc
Confidence 888888887652 111 234567888888888888753
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=1.1e-22 Score=221.55 Aligned_cols=188 Identities=20% Similarity=0.153 Sum_probs=146.7
Q ss_pred CCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHH
Q 008809 280 PSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVAL 359 (552)
Q Consensus 280 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L 359 (552)
..+++|++|++++|.+...+ .++..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+....
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~--~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~l~~n~l~~~~---- 415 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSG--CCSYSDLGTNSLRHLDLSFNGAII-----MSANFMGLEELQHLDFQHSTLKRVT---- 415 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEE--ECCHHHHCCSCCCEEECCSCSEEE-----ECCCCTTCTTCCEEECTTSEEESTT----
T ss_pred ccCCCCCEEECcCCccCCCc--chhhhhccCCcccEeECCCCcccc-----chhhccCCCCCCeeECCCCccCCcc----
Confidence 45689999999999887521 024567889999999999999875 4466778999999999999987631
Q ss_pred H-HHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCc
Q 008809 360 S-KALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKD 438 (552)
Q Consensus 360 ~-~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d 438 (552)
+ ..+..+++|+.|++++|.+.......+ ..+++|++|++++|.+++.. +...+..+++|+.|+|++|.++.
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIF-----LGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTT-----TTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCE
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhh-----cCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCc
Confidence 2 467889999999999999876443322 23789999999999987631 11235566999999999999986
Q ss_pred hHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008809 439 DGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 439 ~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
..+. .+. .+++|++|++++|.++.. .+..+..+++|+.|+|++|+|+.
T Consensus 488 ~~~~----~~~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 488 ISWG----VFD-TLHRLQLLNMSHNNLLFL----DSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp ECTT----TTT-TCTTCCEEECCSSCCSCE----EGGGTTTCTTCCEEECTTSCCCC
T ss_pred cChh----hhc-ccccCCEEECCCCcCCCc----CHHHccCCCcCCEEECCCCcCcc
Confidence 4433 334 789999999999999874 34556779999999999999973
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=7.9e-22 Score=217.78 Aligned_cols=186 Identities=16% Similarity=0.171 Sum_probs=108.7
Q ss_pred CCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHH
Q 008809 133 ADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAE 212 (552)
Q Consensus 133 ~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~ 212 (552)
..++++++++.....+.. ..+... ++++.|++++|.+.......+.. .++|++|+|++|.+...+..
T Consensus 25 ~~l~~L~Ls~n~l~~~~~-------~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA-------ANFTRY-SQLTSLDVGFNTISKLEPELCQK-----LPMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp TTCSEEECCSSCCCCCCG-------GGGGGG-TTCSEEECCSSCCCCCCTTHHHH-----CTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEECCCCCCCCcCH-------HHHhCC-CcCcEEECCCCccCccCHHHHhc-----ccCcCEEECCCCccCccChh
Confidence 567888888876553321 123333 77888888888776433333322 27888888888877665443
Q ss_pred HHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEccc
Q 008809 213 ALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHN 292 (552)
Q Consensus 213 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 292 (552)
.+..+ ++|++|+|++|.+..... ..+..+++|++|++++|.++...+ ..+..+++|++|++++
T Consensus 92 ~~~~l---------~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 92 TFAFC---------TNLTELHLMSNSIQKIKN----NPFVKQKNLITLDLSHNGLSSTKL----GTQVQLENLQELLLSN 154 (680)
T ss_dssp TTTTC---------TTCSEEECCSSCCCCCCS----CTTTTCTTCCEEECCSSCCSCCCC----CSSSCCTTCCEEECCS
T ss_pred hhccC---------CCCCEEECCCCccCccCh----hHccccCCCCEEECCCCcccccCc----hhhcccccCCEEEccC
Confidence 33222 678888888887764321 234556778888888887754321 1234567788888888
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChH
Q 008809 293 NMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVE 354 (552)
Q Consensus 293 n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 354 (552)
|.+.......+. ...+++|+.|++++|.+... .+..+..+++|+.|++++|.+...
T Consensus 155 n~l~~~~~~~~~--~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~~~l~~~ 210 (680)
T 1ziw_A 155 NKIQALKSEELD--IFANSSLKKLELSSNQIKEF----SPGCFHAIGRLFGLFLNNVQLGPS 210 (680)
T ss_dssp SCCCCBCHHHHG--GGTTCEESEEECTTCCCCCB----CTTGGGGSSEECEEECTTCCCHHH
T ss_pred CcccccCHHHhh--ccccccccEEECCCCccccc----ChhhhhhhhhhhhhhccccccChh
Confidence 877652211111 22456777777777776542 223344444555555555544443
No 47
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.81 E-value=3.5e-19 Score=162.93 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=127.2
Q ss_pred HHHHHHHHccCCcccEEecCCC-CCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCC
Q 008809 356 GVALSKALSNYADLTEVYLSYL-NLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAEN 434 (552)
Q Consensus 356 ~~~L~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 434 (552)
...+...+..+++|++|+|++| .+++.++..++.++.. +++|++|+|++|.+++.++..++.++..+++|++|+|++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3456777777888888888888 8888888888888766 5788888888888888888888888888889999999999
Q ss_pred CCCchHHHHHHHHHhhCCCCccEEEc--cCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhcCc
Q 008809 435 ELKDDGAIQISKALEQGHDQLKVVDM--SSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNSP 509 (552)
Q Consensus 435 ~l~d~g~~~l~~~L~~~~~~L~~L~L--s~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~ 509 (552)
.|++.|+..+++++. .+++|++|+| ++|.|++.|+..+++++..+++|++|+|++|.|++.|. +.+++++|.
T Consensus 104 ~i~~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~ 177 (185)
T 1io0_A 104 FISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNN 177 (185)
T ss_dssp CCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHhhH
Confidence 999999999999988 8888999999 88999999999999999999999999999999988874 777777663
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=2e-21 Score=209.57 Aligned_cols=159 Identities=19% Similarity=0.149 Sum_probs=96.3
Q ss_pred CCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHH
Q 008809 281 STEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALS 360 (552)
Q Consensus 281 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~ 360 (552)
.+++|++|++++|.+.. .++..+..+++|+.|++++|+++..+ .++..+..+++|+.|++++|.++.. ++
T Consensus 351 ~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~~N~l~~~----~~ 420 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTD----SVFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSLNSH----AY 420 (562)
T ss_dssp SCCCCCEEECCSSCCCT----TTTTTCCSCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECTTSCCBSC----CS
T ss_pred CCCCceEEECCCCcccc----chhhhhcccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECCCCcCCCc----cC
Confidence 34556666666665553 12333455566666666666655311 1344455566666666666665431 01
Q ss_pred -HHHccCCcccEEecCCCCCCchHHHHHHHHHhcCC-CCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCc
Q 008809 361 -KALSNYADLTEVYLSYLNLEDDGTVAITNALKGSA-PLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKD 438 (552)
Q Consensus 361 -~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d 438 (552)
..+..+++|+.|++++|.+++..+ ... ++|+.|++++|.++.. + ..+..+++|+.|+|++|.|+.
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~--------~~l~~~L~~L~L~~N~l~~i-p----~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVF--------RCLPPKVKVLDLHNNRIMSI-P----KDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGG--------SSCCTTCSEEECCSSCCCCC-C----TTTTSSCCCSEEECCSSCCCC
T ss_pred hhhhcCcccCCEEECCCCCCCcchh--------hhhcCcCCEEECCCCcCccc-C----hhhcCCCCCCEEECCCCCCCC
Confidence 123445666666666666654221 112 5889999999988742 2 223356899999999999885
Q ss_pred hHHHHHHHHHhhCCCCccEEEccCCCCCH
Q 008809 439 DGAIQISKALEQGHDQLKVVDMSSNFIRR 467 (552)
Q Consensus 439 ~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~ 467 (552)
-... .+. .+++|+.|++++|.+..
T Consensus 488 l~~~----~~~-~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 488 VPDG----VFD-RLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCTT----STT-TCTTCCCEECCSCCBCC
T ss_pred CCHH----HHh-cCCCCCEEEecCCCcCC
Confidence 2211 144 78999999999998864
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.7e-22 Score=218.21 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=75.4
Q ss_pred HccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCc-chHHHHHHHhhcCCCcCEEEccCCCCCchHH
Q 008809 363 LSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITV-EAAPVISACVAAKQHLTKLNLAENELKDDGA 441 (552)
Q Consensus 363 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~ 441 (552)
+..+++|+.|++++|.+.......+ ..+++|++|++++|.+++ ..+ ..+..+++|+.|+|++|.+++..+
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~p----~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIF-----NGLSSLEVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTT-----TTCTTCCEEECTTCEEGGGEEC----SCCTTCTTCCEEECTTSCCCEECT
T ss_pred hhcCCCCCEEeCcCCcccccchhhh-----hcCCcCcEEECcCCcCccccch----hhhhcccCCCEEECCCCccccCCh
Confidence 4555666666666666554322111 225677777777777652 122 234556888888888888876433
Q ss_pred HHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008809 442 IQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 442 ~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
. .+. .+++|+.|++++|.++... +..+..+++|+.|++++|+++.
T Consensus 488 ~----~~~-~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 488 T----AFN-SLSSLQVLNMASNQLKSVP----DGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp T----TTT-TCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCC
T ss_pred h----hhh-cccCCCEEeCCCCcCCCCC----HHHhhcccCCcEEEecCCcccC
Confidence 3 333 6888999999999887642 3345668889999999998764
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=7.3e-23 Score=205.85 Aligned_cols=297 Identities=15% Similarity=0.115 Sum_probs=208.8
Q ss_pred CccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHH
Q 008809 134 DVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEA 213 (552)
Q Consensus 134 ~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~ 213 (552)
.++.+++++.....+. .. ..++++.|++++|.+.......+. . .++|++|+|++|.+....+..
T Consensus 34 ~l~~l~~~~~~l~~ip--------~~---~~~~l~~L~l~~n~i~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP--------KE---ISPDTTLLDLQNNDISELRKDDFK----G-LQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSCC--------SC---CCTTCCEEECCSSCCCEECTTTTT----T-CTTCCEEECCSSCCCEECGGG
T ss_pred cCCEEECCCCCccccC--------CC---CCCCCeEEECCCCcCCccCHhHhh----C-CCCCcEEECCCCccCccCHhH
Confidence 4578888887654322 11 226899999999998643222222 2 378999999999988765544
Q ss_pred HHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccC
Q 008809 214 LEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNN 293 (552)
Q Consensus 214 l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 293 (552)
+..+ ++|++|+|++|.++.. +..+ .++|++|++++|.++.... ..+..+++|++|++++|
T Consensus 98 ~~~l---------~~L~~L~L~~n~l~~l-----~~~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 98 FSPL---------RKLQKLYISKNHLVEI-----PPNL--PSSLVELRIHDNRIRKVPK----GVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp STTC---------TTCCEEECCSSCCCSC-----CSSC--CTTCCEEECCSSCCCCCCS----GGGSSCSSCCEEECCSC
T ss_pred hhCc---------CCCCEEECCCCcCCcc-----Cccc--cccCCEEECCCCccCccCH----hHhCCCccCCEEECCCC
Confidence 4333 7999999999998842 2222 2689999999999875321 23567899999999999
Q ss_pred CCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEe
Q 008809 294 MTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVY 373 (552)
Q Consensus 294 ~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~ 373 (552)
.+...+. .+..+..+ +|+.|++++|.++. ++..+ .++|+.|++++|.++... +..+..+++|+.|+
T Consensus 158 ~l~~~~~--~~~~~~~l-~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 158 PLENSGF--EPGAFDGL-KLNYLRISEAKLTG-----IPKDL--PETLNELHLDHNKIQAIE----LEDLLRYSKLYRLG 223 (332)
T ss_dssp CCBGGGS--CTTSSCSC-CCSCCBCCSSBCSS-----CCSSS--CSSCSCCBCCSSCCCCCC----TTSSTTCTTCSCCB
T ss_pred ccccCCC--CcccccCC-ccCEEECcCCCCCc-----cCccc--cCCCCEEECCCCcCCccC----HHHhcCCCCCCEEE
Confidence 9875322 23334455 89999999999876 33322 269999999999988631 35678899999999
Q ss_pred cCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHH-hhCC
Q 008809 374 LSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKAL-EQGH 452 (552)
Q Consensus 374 L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L-~~~~ 452 (552)
+++|.+.......+ ..+++|+.|++++|.++.. + ..+..+++|+.|+|++|.|+..+...++... ....
T Consensus 224 L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~l-p----~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 293 (332)
T 2ft3_A 224 LGHNQIRMIENGSL-----SFLPTLRELHLDNNKLSRV-P----AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293 (332)
T ss_dssp CCSSCCCCCCTTGG-----GGCTTCCEEECCSSCCCBC-C----TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSS
T ss_pred CCCCcCCcCChhHh-----hCCCCCCEEECCCCcCeec-C----hhhhcCccCCEEECCCCCCCccChhHcccccccccc
Confidence 99999987543222 2378999999999999842 2 2356679999999999999876554433210 0014
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCC
Q 008809 453 DQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANI 492 (552)
Q Consensus 453 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~ 492 (552)
..|+.|++++|.+...+ ..+.++..++.|+.|++++|+
T Consensus 294 ~~l~~L~l~~N~~~~~~--~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 294 AYYNGISLFNNPVPYWE--VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBSEEECCSSSSCGGG--SCGGGGTTBCCSTTEEC----
T ss_pred ccccceEeecCcccccc--cCcccccccchhhhhhccccc
Confidence 67999999999987432 123456678999999999885
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=7.2e-22 Score=197.23 Aligned_cols=260 Identities=22% Similarity=0.192 Sum_probs=150.3
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
..++..+++++.+.... ...... .++|++|+|++|.+....+..+..+ ++|++|+|++|.++...
T Consensus 10 ~~l~i~~ls~~~l~~~~----~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~~L~Ls~n~l~~~~- 74 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQAL----ASLRQS-AWNVKELDLSGNPLSQISAADLAPF---------TKLELLNLSSNVLYETL- 74 (317)
T ss_dssp TEEEEESCCTTTHHHHH----HHHHTT-GGGCSEEECTTSCCCCCCHHHHTTC---------TTCCEEECTTSCCEEEE-
T ss_pred CceeEeeccccchhhhH----HHHhcc-CCCCCEEECcCCccCcCCHHHhhCC---------CcCCEEECCCCcCCcch-
Confidence 34555566666553222 222222 3577777777777766554444333 57777777777776432
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCC
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~ 324 (552)
.+..+++|++|++++|.++. +...++|++|++++|.+.. ++ ...+++|+.|++++|+++
T Consensus 75 -----~~~~l~~L~~L~Ls~n~l~~---------l~~~~~L~~L~l~~n~l~~-----~~--~~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 75 -----DLESLSTLRTLDLNNNYVQE---------LLVGPSIETLHAANNNISR-----VS--CSRGQGKKNIYLANNKIT 133 (317)
T ss_dssp -----EETTCTTCCEEECCSSEEEE---------EEECTTCCEEECCSSCCSE-----EE--ECCCSSCEEEECCSSCCC
T ss_pred -----hhhhcCCCCEEECcCCcccc---------ccCCCCcCEEECCCCccCC-----cC--ccccCCCCEEECCCCCCC
Confidence 14556777777777777653 2234677777777777765 21 123566777777777766
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHH-ccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEc
Q 008809 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKAL-SNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLEL 403 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L 403 (552)
.. .+..+..+++|+.|++++|.++... +..+ ..+++|+.|++++|.++.... . ..+++|++|++
T Consensus 134 ~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~------~-~~l~~L~~L~L 198 (317)
T 3o53_A 134 ML----RDLDEGCRSRVQYLDLKLNEIDTVN----FAELAASSDTLEHLNLQYNFIYDVKG------Q-VVFAKLKTLDL 198 (317)
T ss_dssp SG----GGBCTGGGSSEEEEECTTSCCCEEE----GGGGGGGTTTCCEEECTTSCCCEEEC------C-CCCTTCCEEEC
T ss_pred Cc----cchhhhccCCCCEEECCCCCCCccc----HHHHhhccCcCCEEECCCCcCccccc------c-cccccCCEEEC
Confidence 53 1224455667777777777766531 2222 345677777777777665310 0 12466777777
Q ss_pred cCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCc
Q 008809 404 AGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGF 483 (552)
Q Consensus 404 s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L 483 (552)
++|.++..... +..+++|+.|+|++|.|+. +...+. .+++|+.|++++|.+... .++..+..++.|
T Consensus 199 s~N~l~~l~~~-----~~~l~~L~~L~L~~N~l~~-----l~~~~~-~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L 264 (317)
T 3o53_A 199 SSNKLAFMGPE-----FQSAAGVTWISLRNNKLVL-----IEKALR-FSQNLEHFDLRGNGFHCG---TLRDFFSKNQRV 264 (317)
T ss_dssp CSSCCCEECGG-----GGGGTTCSEEECTTSCCCE-----ECTTCC-CCTTCCEEECTTCCCBHH---HHHHHHHTCHHH
T ss_pred CCCcCCcchhh-----hcccCcccEEECcCCcccc-----hhhHhh-cCCCCCEEEccCCCccCc---CHHHHHhccccc
Confidence 77776653321 3334677777777777663 122333 566777777777777632 244455556666
Q ss_pred cEEEec
Q 008809 484 KQLNID 489 (552)
Q Consensus 484 ~~L~L~ 489 (552)
+.|++.
T Consensus 265 ~~l~l~ 270 (317)
T 3o53_A 265 QTVAKQ 270 (317)
T ss_dssp HHHHHH
T ss_pred eEEECC
Confidence 666554
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=1.8e-20 Score=196.31 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=43.2
Q ss_pred CCCcCEEEccCCCCCchH------HHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008809 423 KQHLTKLNLAENELKDDG------AIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 423 ~~~L~~L~Ls~n~l~d~g------~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
+++|+.|+|++|.....- +..+ .+. .+++|+.|++++|.++.. .+..+++|+.|++++|+|++
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~~~~~L~~L--~l~-~~~~L~~L~L~~N~l~~l-------~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDCQAAGITEL--DLS-QNPKLVYLYLNNTELTEL-------DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEECTTCCCSCC--CCT-TCTTCCEEECTTCCCSCC-------CCTTCTTCSEEECCSSCCCB
T ss_pred cccCCEEECCCCcccceeccCCCcceEe--chh-hcccCCEEECCCCccccc-------ccccCCcCcEEECCCCCCCC
Confidence 467777777777421100 0000 123 678999999999999873 16678999999999999986
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=4.5e-21 Score=194.44 Aligned_cols=257 Identities=18% Similarity=0.138 Sum_probs=197.6
Q ss_pred cCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 008809 194 SQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAAR 273 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 273 (552)
+.....+++++.+...+.... ++|++|++++|.++.... ..+..+++|+.|++++|.++....
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~------------~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~- 93 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT------------EAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIEE- 93 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC------------TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEECT-
T ss_pred CCCeEeeCCCCCccccccccc------------ccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccCH-
Confidence 445568888888876543211 589999999999986432 245667999999999999975422
Q ss_pred HHHHhcCCCCCccEEEcccCCCChHHHHHHHH-HhhcCCCccEEEeeCCCCChHHHHHHHH--HhhcCCCCCEEecCCCC
Q 008809 274 AVCELIPSTEKLRVLQFHNNMTGDEGAQAISD-VVKHSPLLEDFRCSSTRIGSEGGTALSE--ALESCTHLKKLDLRDNM 350 (552)
Q Consensus 274 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~ls~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~ 350 (552)
..+..+++|++|+|++|.+.. ++. .+..+++|++|++++|+++. ++. .+..+++|+.|++++|.
T Consensus 94 ---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 94 ---DSFSSLGSLEHLDLSYNYLSN-----LSSSWFKPLSSLTFLNLLGNPYKT-----LGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp ---TTTTTCTTCCEEECCSSCCSS-----CCHHHHTTCTTCSEEECTTCCCSS-----SCSSCSCTTCTTCCEEEEEESS
T ss_pred ---hhcCCCCCCCEEECCCCcCCc-----CCHhHhCCCccCCEEECCCCCCcc-----cCchhhhccCCCCcEEECCCCc
Confidence 235667999999999999986 433 37889999999999999875 443 57789999999999994
Q ss_pred -CChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEE
Q 008809 351 -FGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKL 429 (552)
Q Consensus 351 -l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L 429 (552)
++.. .+..+..+++|+.|++++|.+.......+ ..+++|++|++++|.++...... +..+++|+.|
T Consensus 161 ~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L 227 (353)
T 2z80_A 161 TFTKI----QRKDFAGLTFLEELEIDASDLQSYEPKSL-----KSIQNVSHLILHMKQHILLLEIF----VDVTSSVECL 227 (353)
T ss_dssp SCCEE----CTTTTTTCCEEEEEEEEETTCCEECTTTT-----TTCSEEEEEEEECSCSTTHHHHH----HHHTTTEEEE
T ss_pred ccccc----CHHHccCCCCCCEEECCCCCcCccCHHHH-----hccccCCeecCCCCccccchhhh----hhhcccccEE
Confidence 6542 13467889999999999999987543333 23789999999999987643322 2335999999
Q ss_pred EccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008809 430 NLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 430 ~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
+|++|.++......+.. .. ....++.++++++.+++.++..++..+..+++|+.|++++|.|+.
T Consensus 228 ~L~~n~l~~~~~~~l~~-~~-~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 228 ELRDTDLDTFHFSELST-GE-TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp EEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred ECCCCcccccccccccc-cc-ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 99999988654433332 22 578899999999999999999999999999999999999999873
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=3.6e-23 Score=206.24 Aligned_cols=225 Identities=20% Similarity=0.250 Sum_probs=120.1
Q ss_pred CCccEEEcCC-CCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH
Q 008809 227 SVLKSLNLSD-NALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD 305 (552)
Q Consensus 227 ~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 305 (552)
++|++|+|++ |.+... ++..+..+++|++|+|++|.+++..+. .+..+++|++|+|++|.+.. .++.
T Consensus 76 ~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~----~~p~ 143 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSG----TLPP 143 (313)
T ss_dssp TTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEES----CCCG
T ss_pred CCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCC----cCCh
Confidence 4555555553 444322 222334446666666666665422211 23344566666666665542 1334
Q ss_pred HhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCC-CCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHH
Q 008809 306 VVKHSPLLEDFRCSSTRIGSEGGTALSEALESCT-HLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGT 384 (552)
Q Consensus 306 ~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~ 384 (552)
.+..+++|++|++++|+++.. ++..+..++ +|+.|++++|.++.. ++..+..++ |+.|++++|.+.....
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~~~~ 214 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEGDAS 214 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred HHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccCcCC
Confidence 455566666666666666532 444555555 666666666665532 233444444 6666666666554322
Q ss_pred HHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCC
Q 008809 385 VAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNF 464 (552)
Q Consensus 385 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~ 464 (552)
..+ ..+++|+.|++++|.++...+. +..+++|++|+|++|.|+... +..+. .+++|+.|+|++|.
T Consensus 215 ~~~-----~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~----p~~l~-~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 215 VLF-----GSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGTL----PQGLT-QLKFLHSLNVSFNN 279 (313)
T ss_dssp GGC-----CTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEECC----CGGGG-GCTTCCEEECCSSE
T ss_pred HHH-----hcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCcccCcC----ChHHh-cCcCCCEEECcCCc
Confidence 111 2256667777777666543321 334466777777777665422 22333 56677777777776
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEecCCC
Q 008809 465 IRRAGARQLAQVVIQKPGFKQLNIDANI 492 (552)
Q Consensus 465 i~~~g~~~l~~~l~~~~~L~~L~L~~N~ 492 (552)
+++. ++.. ..+++|+.|++++|+
T Consensus 280 l~~~----ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 280 LCGE----IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEE----CCCS-TTGGGSCGGGTCSSS
T ss_pred cccc----CCCC-ccccccChHHhcCCC
Confidence 6532 2221 345666777777765
No 55
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=5.9e-21 Score=189.99 Aligned_cols=247 Identities=21% Similarity=0.191 Sum_probs=169.7
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
..++.|.+.++.++...+..+...+.. ++|++|++++|.+++..+..+.. ..+++|++|+|++|.+.......-...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHH
Confidence 467888888888887777666665543 56888888888876543221100 557889999999998875222111123
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..+++|++|++++|++... .+..+..+++|+.|+|++|.+...........+..+++|++|++++|.++....
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-- 214 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAF----SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-- 214 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCC----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH--
T ss_pred hhhccCCCEEEeeCCCcchh----hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH--
Confidence 45788999999999998653 345667888999999999987653221112223678899999999999975322
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
.+..+...+++|++|+|++|.++...+..+..+ ...++|++|+|++|.|+.- +.. ..++|+.|+|++|.|+
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-~~~~~L~~L~Ls~N~l~~l-----p~~---~~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-MWSSALNSLNLSFAGLEQV-----PKG---LPAKLRVLDLSSNRLN 285 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-CCCTTCCCEECCSSCCCSC-----CSC---CCSCCSCEECCSCCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-cCcCcCCEEECCCCCCCch-----hhh---hcCCCCEEECCCCcCC
Confidence 222222336899999999999887543333221 1126899999999998731 221 2479999999999998
Q ss_pred HHHHHHHHHHHhcCCCccEEEecCCCCCHHH
Q 008809 467 RAGARQLAQVVIQKPGFKQLNIDANIISEEG 497 (552)
Q Consensus 467 ~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g 497 (552)
.. + .+..+++|+.|+|++|+|++.|
T Consensus 286 ~~-----~-~~~~l~~L~~L~L~~N~l~~~g 310 (310)
T 4glp_A 286 RA-----P-QPDELPEVDNLTLDGNPFLVPG 310 (310)
T ss_dssp SC-----C-CTTSCCCCSCEECSSTTTSCCC
T ss_pred CC-----c-hhhhCCCccEEECcCCCCCCCC
Confidence 63 1 1456899999999999998754
No 56
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.79 E-value=1.2e-18 Score=159.26 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=120.0
Q ss_pred HHHHHHhhcCCCCCEEecCCC-CCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCC
Q 008809 329 TALSEALESCTHLKKLDLRDN-MFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGND 407 (552)
Q Consensus 329 ~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 407 (552)
..+...+..+++|++|+|++| .+++.++..+..++..+++|++|+|++|.|++.|+..++.++.. +++|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~-n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh-CCCcCEEECcCCc
Confidence 346677777778888888887 78888878888888888888888888888888888888887775 4778888888888
Q ss_pred CCcchHHHHHHHhhcCCCcCEEEc--cCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCC
Q 008809 408 ITVEAAPVISACVAAKQHLTKLNL--AENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPG 482 (552)
Q Consensus 408 l~~~~~~~l~~~l~~~~~L~~L~L--s~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~ 482 (552)
|++.++..++.++..+++|++|+| ++|.|++.|+..+++++. .+++|++|+|++|.|++.|. +++++.++..
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~~ 178 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQGPRLR--ASNAMMNNND 178 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHHHHHH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCChHHH--HHHHHHhhHH
Confidence 888888888888888888888888 788888888888888888 78888888888888887763 6666665543
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=9.6e-21 Score=188.62 Aligned_cols=214 Identities=23% Similarity=0.248 Sum_probs=138.3
Q ss_pred CCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhc--CCCccEEEeeCCCCChHHHHHH
Q 008809 254 QSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKH--SPLLEDFRCSSTRIGSEGGTAL 331 (552)
Q Consensus 254 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~--~~~L~~L~ls~n~l~~~~~~~l 331 (552)
+++|++|+|++|.+++..+..+. +..+++|++|+|++|.+... ...+.. +.. +++|++|++++|+++.. .
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~----~ 165 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLL--EATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNF----S 165 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSS--SCCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCC----C
T ss_pred cCCccEEEccCCcccchhHHHHH--HhcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccc----h
Confidence 46677777777776543222110 24567777777777777652 111111 111 27788888888887653 2
Q ss_pred HHHhhcCCCCCEEecCCCCCChHHHHHHHHHH--ccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCC
Q 008809 332 SEALESCTHLKKLDLRDNMFGVEAGVALSKAL--SNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDIT 409 (552)
Q Consensus 332 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 409 (552)
+..++.+++|+.|++++|.+.... .++..+ ..+++|+.|++++|.++..+ .+...+...+++|++|++++|.++
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGER--GLISALCPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHH--HHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCC
T ss_pred HHHhccCCCCCEEECCCCCcCcch--HHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCC
Confidence 356677888888888888876431 123344 67788888888888887432 233333334678888888888887
Q ss_pred cchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEec
Q 008809 410 VEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNID 489 (552)
Q Consensus 410 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~ 489 (552)
...+.. .+...++|+.|+|++|.|+. ++.. ..++|+.|+|++|+|++. +. +..+++|+.|+|+
T Consensus 242 ~~~~~~---~~~~l~~L~~L~Ls~N~l~~-----ip~~---~~~~L~~L~Ls~N~l~~~-----p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 242 DAAGAP---SCDWPSQLNSLNLSFTGLKQ-----VPKG---LPAKLSVLDLSYNRLDRN-----PS-PDELPQVGNLSLK 304 (312)
T ss_dssp SSCCCS---CCCCCTTCCEEECTTSCCSS-----CCSS---CCSEEEEEECCSSCCCSC-----CC-TTTSCEEEEEECT
T ss_pred cccchh---hhhhcCCCCEEECCCCccCh-----hhhh---ccCCceEEECCCCCCCCC-----hh-HhhCCCCCEEecc
Confidence 643111 12234789999999998873 1221 126899999999998764 22 5568899999999
Q ss_pred CCCCCHH
Q 008809 490 ANIISEE 496 (552)
Q Consensus 490 ~N~i~~~ 496 (552)
+|+|++.
T Consensus 305 ~N~l~~~ 311 (312)
T 1wwl_A 305 GNPFLDS 311 (312)
T ss_dssp TCTTTCC
T ss_pred CCCCCCC
Confidence 9998764
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=2.9e-22 Score=226.20 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=82.4
Q ss_pred CCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCH-HHHHHHHHHHHhhccCccEEEeccccCCCchH
Q 008809 133 ADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGL-EAARVAEPILVSINSQLKEVDLSDFVAGRPEA 211 (552)
Q Consensus 133 ~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~ 211 (552)
+.++++||+++.+..+. ...+... ++|+.|++++|.+.. ..... +.. .++|++|+|++|.+....+
T Consensus 24 ~~l~~LdLs~N~i~~i~-------~~~~~~l-~~L~~LdLs~n~~~~~i~~~~----f~~-L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVT-------ASSFPFL-EQLQLLELGSQYTPLTIDKEA----FRN-LPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp TTCCEEEEESCCCCEEC-------SSSCSSC-CSCSEEEECTTCCCCEECTTT----TSS-CTTCCEEECTTCCCCEECT
T ss_pred CCcCEEECCCCcCCccC-------hhHCccc-ccCeEEeCCCCCCccccCHHH----hcC-CCCCCEEECCCCcCcccCH
Confidence 56788888887654322 1233333 778888888874321 10111 111 2678888888887766544
Q ss_pred HHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcc
Q 008809 212 EALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFH 291 (552)
Q Consensus 212 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 291 (552)
..+..+ .+|++|+|++|.+...... ...+..+++|++|+|++|.++...+ ...+..+++|++|+|+
T Consensus 91 ~~~~~l---------~~L~~L~Ls~n~l~~~~~~--~~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 91 DAFQGL---------FHLFELRLYFCGLSDAVLK--DGYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLNSLKSIDFS 156 (844)
T ss_dssp TSSCSC---------SSCCCEECTTCCCSSCCST--TCCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCSSCCEEEEE
T ss_pred hHccCC---------cccCEeeCcCCCCCccccc--CccccccCCCCEEECCCCccccccc---chhHhhCCCCCEEECC
Confidence 433322 6788888888877642111 0125566788888888887754321 1234566788888888
Q ss_pred cCCCCh
Q 008809 292 NNMTGD 297 (552)
Q Consensus 292 ~n~l~~ 297 (552)
+|.+..
T Consensus 157 ~N~i~~ 162 (844)
T 3j0a_A 157 SNQIFL 162 (844)
T ss_dssp SSCCCC
T ss_pred CCcCCe
Confidence 887754
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=4.9e-21 Score=211.40 Aligned_cols=277 Identities=21% Similarity=0.192 Sum_probs=181.4
Q ss_pred cEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHH
Q 008809 136 TLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALE 215 (552)
Q Consensus 136 ~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~ 215 (552)
+.+|+++.....+. ..+ .++++.|++++|.+.......+.. .++|++|+|++|.+....+..+.
T Consensus 7 ~~~~cs~~~L~~ip--------~~~---~~~l~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~~~ 70 (680)
T 1ziw_A 7 EVADCSHLKLTQVP--------DDL---PTNITVLNLTHNQLRRLPAANFTR-----YSQLTSLDVGFNTISKLEPELCQ 70 (680)
T ss_dssp SEEECCSSCCSSCC--------SCS---CTTCSEEECCSSCCCCCCGGGGGG-----GTTCSEEECCSSCCCCCCTTHHH
T ss_pred CeeECCCCCccccc--------ccc---CCCCcEEECCCCCCCCcCHHHHhC-----CCcCcEEECCCCccCccCHHHHh
Confidence 56788876544211 112 268999999999986533322222 37999999999999887666665
Q ss_pred HHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCC
Q 008809 216 VMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMT 295 (552)
Q Consensus 216 ~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 295 (552)
.+ ++|++|+|++|.++.... ..+..+++|++|+|++|.++.... ..+..+++|++|+|++|.+
T Consensus 71 ~l---------~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 71 KL---------PMLKVLNLQHNELSQLSD----KTFAFCTNLTELHLMSNSIQKIKN----NPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp HC---------TTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCCCS----CTTTTCTTCCEEECCSSCC
T ss_pred cc---------cCcCEEECCCCccCccCh----hhhccCCCCCEEECCCCccCccCh----hHccccCCCCEEECCCCcc
Confidence 55 799999999999885321 245667999999999999865321 2356679999999999988
Q ss_pred ChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHh--hcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEe
Q 008809 296 GDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEAL--ESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVY 373 (552)
Q Consensus 296 ~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~ 373 (552)
... .+..+..+++|++|++++|.++... +..+ ..+++|+.|++++|.++... +..+..+++|+.|+
T Consensus 134 ~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 134 SST----KLGTQVQLENLQELLLSNNKIQALK----SEELDIFANSSLKKLELSSNQIKEFS----PGCFHAIGRLFGLF 201 (680)
T ss_dssp SCC----CCCSSSCCTTCCEEECCSSCCCCBC----HHHHGGGTTCEESEEECTTCCCCCBC----TTGGGGSSEECEEE
T ss_pred ccc----CchhhcccccCCEEEccCCcccccC----HHHhhccccccccEEECCCCcccccC----hhhhhhhhhhhhhh
Confidence 752 2334667899999999999987642 2222 35689999999999987632 34566677777777
Q ss_pred cCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCC
Q 008809 374 LSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHD 453 (552)
Q Consensus 374 L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~ 453 (552)
+.++.+.......++..+. .++|+.|++++|.++...+..+..+ ..++|+.|+|++|.++..... .+. .++
T Consensus 202 l~~~~l~~~~~~~~~~~l~--~~~L~~L~L~~n~l~~~~~~~~~~l--~~~~L~~L~Ls~n~l~~~~~~----~~~-~l~ 272 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELA--NTSIRNLSLSNSQLSTTSNTTFLGL--KWTNLTMLDLSYNNLNVVGND----SFA-WLP 272 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHT--TSCCCEEECTTSCCCEECTTTTGGG--GGSCCCEEECTTSCCCEECTT----TTT-TCT
T ss_pred ccccccChhhHHHHHHHhh--hccccEEEccCCcccccChhHhhcc--CcCCCCEEECCCCCcCccCcc----ccc-Ccc
Confidence 7777776655555554442 2556666666666555433322221 012355666655555432211 122 455
Q ss_pred CccEEEccCCCCC
Q 008809 454 QLKVVDMSSNFIR 466 (552)
Q Consensus 454 ~L~~L~Ls~n~i~ 466 (552)
+|+.|++++|.++
T Consensus 273 ~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 273 QLEYFFLEYNNIQ 285 (680)
T ss_dssp TCCEEECCSCCBS
T ss_pred cccEeeCCCCccC
Confidence 5555555555544
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=5.4e-22 Score=197.05 Aligned_cols=197 Identities=16% Similarity=0.152 Sum_probs=101.7
Q ss_pred CCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHH
Q 008809 283 EKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKA 362 (552)
Q Consensus 283 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~ 362 (552)
++|++|+|++|.+.. ++..+..+++|++|++++|.+..... ...+..+++|+.|++++|.+... .+..
T Consensus 78 ~~L~~L~Ls~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~ 145 (306)
T 2z66_A 78 TSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----FNGI 145 (306)
T ss_dssp SCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----STTT
T ss_pred cccCEEECCCCcccc-----ChhhcCCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----chhh
Confidence 445555555554443 23334445555555555555433110 02344555666666666655432 1233
Q ss_pred HccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHH
Q 008809 363 LSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAI 442 (552)
Q Consensus 363 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~ 442 (552)
+..+++|+.|++++|.+..... ...+ ..+++|++|++++|.++...+.. +..+++|+.|+|++|.+++....
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~---~~~~-~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFL---PDIF-TELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEE---CSCC-TTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCSBCCSG
T ss_pred cccCcCCCEEECCCCccccccc---hhHH-hhCcCCCEEECCCCCcCCcCHHH----hcCCCCCCEEECCCCccCccChh
Confidence 4555666666666665543110 0011 12466777777777666543322 33346777777777766653322
Q ss_pred HHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCC-CccEEEecCCCCCH-HHHHHHHHHHhcC
Q 008809 443 QISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKP-GFKQLNIDANIISE-EGIDEVKEIFKNS 508 (552)
Q Consensus 443 ~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~-~L~~L~L~~N~i~~-~g~~~l~~~l~~~ 508 (552)
. +. .+++|+.|++++|.++... +..+..++ +|+.|+|++|+++. ..+..+.+.++..
T Consensus 218 ~----~~-~l~~L~~L~L~~N~l~~~~----~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~ 276 (306)
T 2z66_A 218 P----YK-CLNSLQVLDYSLNHIMTSK----KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 276 (306)
T ss_dssp G----GT-TCTTCCEEECTTSCCCBCS----SSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHT
T ss_pred h----cc-CcccCCEeECCCCCCcccC----HHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhh
Confidence 1 22 5677777777777776542 22233453 67777777777753 3344455555444
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=9e-21 Score=189.25 Aligned_cols=223 Identities=18% Similarity=0.197 Sum_probs=176.0
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
++|++|+|++|.++.... ..+..+++|+.|+|++|.+++... +..+++|++|++++|.+..
T Consensus 34 ~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~--------- 94 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQE--------- 94 (317)
T ss_dssp GGCSEEECTTSCCCCCCH----HHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEE---------
T ss_pred CCCCEEECcCCccCcCCH----HHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCcccc---------
Confidence 589999999999987533 345667999999999999975431 6778999999999999876
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+...++|+.|++++|.++... ...+++|+.|++++|.++... +..+..+++|+.|++++|.+.......
T Consensus 95 l~~~~~L~~L~l~~n~l~~~~-------~~~~~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 95 LLVGPSIETLHAANNNISRVS-------CSRGQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEECTTCCEEECCSSCCSEEE-------ECCCSSCEEEECCSSCCCSGG----GBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccCCCCcCEEECCCCccCCcC-------ccccCCCCEEECCCCCCCCcc----chhhhccCCCCEEECCCCCCCcccHHH
Confidence 335689999999999998631 234678999999999998731 335677899999999999999754433
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
+. ..+++|++|++++|.++.... ...+++|+.|+|++|.++.... .+. .+++|+.|++++|.|+
T Consensus 164 ~~----~~l~~L~~L~L~~N~l~~~~~------~~~l~~L~~L~Ls~N~l~~l~~-----~~~-~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 164 LA----ASSDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNKLAFMGP-----EFQ-SAAGVTWISLRNNKLV 227 (317)
T ss_dssp GG----GGTTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSCCCEECG-----GGG-GGTTCSEEECTTSCCC
T ss_pred Hh----hccCcCCEEECCCCcCccccc------ccccccCCEEECCCCcCCcchh-----hhc-ccCcccEEECcCCccc
Confidence 32 236899999999999987522 2235899999999999986422 244 7899999999999998
Q ss_pred HHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHH
Q 008809 467 RAGARQLAQVVIQKPGFKQLNIDANIISEEGIDE 500 (552)
Q Consensus 467 ~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~ 500 (552)
. ++..+..+++|+.|++++|+++...+..
T Consensus 228 ~-----l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 228 L-----IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp E-----ECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred c-----hhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 5 4556777899999999999999544433
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=5.3e-22 Score=214.41 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=74.7
Q ss_pred cCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHH--------------------HHhcCCC
Q 008809 337 SCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITN--------------------ALKGSAP 396 (552)
Q Consensus 337 ~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~~~~ 396 (552)
.+++|+.|++++|.++..+ .++..+..+++|+.|++++|.+...... +.. .....++
T Consensus 345 ~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp BCTTCCEEECCSSCCBEEE--EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred cCCCCCEEeCcCCccCccc--cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 4556666777766665321 0023344555555555555544331110 000 0011245
Q ss_pred CccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHH
Q 008809 397 LLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQV 476 (552)
Q Consensus 397 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 476 (552)
+|++|++++|.++...+. .+..+++|+.|+|++|.+++.. ++..+. .+++|+.|++++|.++... +..
T Consensus 422 ~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~---~p~~~~-~l~~L~~L~l~~n~l~~~~----~~~ 489 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENF---LPDIFT-ELRNLTFLDLSQCQLEQLS----PTA 489 (570)
T ss_dssp TCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGE---ECSCCT-TCTTCCEEECTTSCCCEEC----TTT
T ss_pred CCCEEeCcCCcccccchh----hhhcCCcCcEEECcCCcCcccc---chhhhh-cccCCCEEECCCCccccCC----hhh
Confidence 666666666665543322 2334466777777777654211 112233 5677777777777776532 334
Q ss_pred HhcCCCccEEEecCCCCCH
Q 008809 477 VIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 477 l~~~~~L~~L~L~~N~i~~ 495 (552)
+..+++|+.|++++|.++.
T Consensus 490 ~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTTCTTCCEEECCSSCCSC
T ss_pred hhcccCCCEEeCCCCcCCC
Confidence 4557777777777777664
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=5.5e-22 Score=224.00 Aligned_cols=307 Identities=19% Similarity=0.121 Sum_probs=192.9
Q ss_pred cEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEecccc-CCCchHHHH
Q 008809 136 TLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFV-AGRPEAEAL 214 (552)
Q Consensus 136 ~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~-~~~~~~~~l 214 (552)
...|+++.....+. ...++++.|+|++|.++......+. . ..+|++|+|++|. ++...+..+
T Consensus 7 ~~~dcs~~~L~~vP------------~lp~~l~~LdLs~N~i~~i~~~~~~----~-l~~L~~LdLs~n~~~~~i~~~~f 69 (844)
T 3j0a_A 7 RIAFYRFCNLTQVP------------QVLNTTERLLLSFNYIRTVTASSFP----F-LEQLQLLELGSQYTPLTIDKEAF 69 (844)
T ss_dssp EEEEESCCCSSCCC------------SSCTTCCEEEEESCCCCEECSSSCS----S-CCSCSEEEECTTCCCCEECTTTT
T ss_pred eEEEccCCCCCCCC------------CCCCCcCEEECCCCcCCccChhHCc----c-cccCeEEeCCCCCCccccCHHHh
Confidence 45677766544321 1337899999999998643222221 1 3799999999994 333323333
Q ss_pred HHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCC
Q 008809 215 EVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNM 294 (552)
Q Consensus 215 ~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 294 (552)
..+ ++|++|+|++|.+... .+..+..+++|++|+|++|.+++..+. ...+..+++|++|+|++|.
T Consensus 70 ~~L---------~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 70 RNL---------PNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLK--DGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp SSC---------TTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCST--TCCCSSCSSCCEEEEESCC
T ss_pred cCC---------CCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCccccc--CccccccCCCCEEECCCCc
Confidence 333 7999999999999865 234566779999999999998753211 1125678999999999999
Q ss_pred CChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHH----------------------hhcCC------CCCEEec
Q 008809 295 TGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEA----------------------LESCT------HLKKLDL 346 (552)
Q Consensus 295 l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~----------------------l~~~~------~L~~L~L 346 (552)
+.... .+..+..+++|+.|++++|.+.......+... +..++ +|+.|++
T Consensus 135 l~~~~---~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 211 (844)
T 3j0a_A 135 IRSLY---LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDV 211 (844)
T ss_dssp CCCCC---CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBC
T ss_pred ccccc---cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEec
Confidence 87521 22457889999999999999865311111111 01111 2566666
Q ss_pred CCCCCChHHHHHHHHHHc--------------------------------c--CCcccEEecCCCCCCchHHHHHHHHHh
Q 008809 347 RDNMFGVEAGVALSKALS--------------------------------N--YADLTEVYLSYLNLEDDGTVAITNALK 392 (552)
Q Consensus 347 s~n~l~~~~~~~L~~~l~--------------------------------~--~~~L~~L~L~~n~l~~~~~~~l~~~l~ 392 (552)
++|.++......+...+. . .++|+.|++++|.+.......+
T Consensus 212 s~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~----- 286 (844)
T 3j0a_A 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF----- 286 (844)
T ss_dssp SSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS-----
T ss_pred CCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh-----
Confidence 666554332111111110 0 1456666666666654321111
Q ss_pred cCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHH
Q 008809 393 GSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQ 472 (552)
Q Consensus 393 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~ 472 (552)
..+++|+.|+|++|.++...+.. +..+++|+.|+|++|.++.... ..+. .+++|+.|++++|.|+...
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~----~~~~-~l~~L~~L~L~~N~i~~~~--- 354 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEA----FYGLDNLQVLNLSYNLLGELYS----SNFY-GLPKVAYIDLQKNHIAIIQ--- 354 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTT----TTTCSSCCEEEEESCCCSCCCS----CSCS-SCTTCCEEECCSCCCCCCC---
T ss_pred hcCCCCCEEECCCCcCCCCChHH----hcCCCCCCEEECCCCCCCccCH----HHhc-CCCCCCEEECCCCCCCccC---
Confidence 23577788888888777654432 3445788888888887764322 2233 6778888888888876532
Q ss_pred HHHHHhcCCCccEEEecCCCCCH
Q 008809 473 LAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 473 l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
...+..+++|+.|+|++|.++.
T Consensus 355 -~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 355 -DQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp -SSCSCSCCCCCEEEEETCCSCC
T ss_pred -hhhhcCCCCCCEEECCCCCCCc
Confidence 2234567889999999988874
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=8.4e-22 Score=195.67 Aligned_cols=267 Identities=19% Similarity=0.185 Sum_probs=196.1
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHH
Q 008809 166 SYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVR 245 (552)
Q Consensus 166 ~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~ 245 (552)
..+.++.+++.++.. ....+++|++|+|++|.+...+...+..+ ++|++|+|++|.++..+..
T Consensus 8 ~~~~l~c~~~~l~~i--------p~~~~~~l~~L~L~~n~l~~i~~~~~~~l---------~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 8 SGTEIRCNSKGLTSV--------PTGIPSSATRLELESNKLQSLPHGVFDKL---------TQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp ETTEEECCSSCCSSC--------CSCCCTTCCEEECCSSCCCCCCTTTTTTC---------TTCSEEECCSSCCCEEEEE
T ss_pred CCCEEEcCCCCcccC--------CCCCCCCCCEEECCCCccCccCHhHhhcc---------ccCCEEECCCCccCcccCc
Confidence 356788888887532 22234799999999999887654433333 7999999999999853210
Q ss_pred HHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHH--HHhhcCCCccEEEeeCCCC
Q 008809 246 AFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAIS--DVVKHSPLLEDFRCSSTRI 323 (552)
Q Consensus 246 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~--~~l~~~~~L~~L~ls~n~l 323 (552)
...+..+++|+.|+|++|.++. +...+..+++|++|++++|.+.. ++ ..+..+++|+.|++++|.+
T Consensus 71 --~~~~~~~~~L~~L~Ls~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~l~~L~~L~l~~n~l 138 (306)
T 2z66_A 71 --SQSDFGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQ-----MSEFSVFLSLRNLIYLDISHTHT 138 (306)
T ss_dssp --EHHHHSCSCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEES-----STTTTTTTTCTTCCEEECTTSCC
T ss_pred --ccccccccccCEEECCCCcccc-----ChhhcCCCCCCCEEECCCCcccc-----cccchhhhhccCCCEEECCCCcC
Confidence 1122346899999999999864 22235668999999999998875 32 3577889999999999998
Q ss_pred ChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEc
Q 008809 324 GSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLEL 403 (552)
Q Consensus 324 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L 403 (552)
... .+..+..+++|+.|++++|.++... ++..+..+++|+.|++++|.++......+ ..+++|++|++
T Consensus 139 ~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L 206 (306)
T 2z66_A 139 RVA----FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAF-----NSLSSLQVLNM 206 (306)
T ss_dssp EEC----STTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTTT-----TTCTTCCEEEC
T ss_pred Ccc----chhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEECCCCCcCCcCHHHh-----cCCCCCCEEEC
Confidence 754 3456778899999999999986521 24567888999999999999987543333 23789999999
Q ss_pred cCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCC-CCccEEEccCCCCCH-HHHHHHHHHHhcCC
Q 008809 404 AGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGH-DQLKVVDMSSNFIRR-AGARQLAQVVIQKP 481 (552)
Q Consensus 404 s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~-~~L~~L~Ls~n~i~~-~g~~~l~~~l~~~~ 481 (552)
++|.++...... +..+++|+.|+|++|.++...+.. +. .. ++|+.|+|++|.++. .....+.+++...+
T Consensus 207 ~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~----~~-~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~ 277 (306)
T 2z66_A 207 SHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKKQE----LQ-HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 277 (306)
T ss_dssp TTSCCSBCCSGG----GTTCTTCCEEECTTSCCCBCSSSS----CC-CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTG
T ss_pred CCCccCccChhh----ccCcccCCEeECCCCCCcccCHHH----HH-hhhccCCEEEccCCCeecccChHHHHHHHHhhh
Confidence 999998754433 455699999999999998744332 22 44 589999999998853 33455666665544
Q ss_pred C
Q 008809 482 G 482 (552)
Q Consensus 482 ~ 482 (552)
.
T Consensus 278 ~ 278 (306)
T 2z66_A 278 Q 278 (306)
T ss_dssp G
T ss_pred h
Confidence 3
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=5.2e-19 Score=191.14 Aligned_cols=270 Identities=16% Similarity=0.192 Sum_probs=206.3
Q ss_pred CccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHH
Q 008809 134 DVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEA 213 (552)
Q Consensus 134 ~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~ 213 (552)
.++.+++++..+..+. .. ..++++.|++++|.++... ...++|++|+|++|.++..+.
T Consensus 41 ~l~~L~ls~n~L~~lp--------~~---l~~~L~~L~L~~N~l~~lp---------~~l~~L~~L~Ls~N~l~~lp~-- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLP--------DC---LPAHITTLVIPDNNLTSLP---------ALPPELRTLEVSGNQLTSLPV-- 98 (622)
T ss_dssp CCCEEECCSSCCSCCC--------SC---CCTTCSEEEECSCCCSCCC---------CCCTTCCEEEECSCCCSCCCC--
T ss_pred CCcEEEecCCCcCccC--------hh---hCCCCcEEEecCCCCCCCC---------CcCCCCCEEEcCCCcCCcCCC--
Confidence 4588999987754322 11 1268999999999986311 124799999999999876533
Q ss_pred HHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccC
Q 008809 214 LEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNN 293 (552)
Q Consensus 214 l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 293 (552)
. .++|++|+|++|.++... . .+++|+.|++++|.|+... ...++|++|+|++|
T Consensus 99 --~---------l~~L~~L~Ls~N~l~~l~-----~---~l~~L~~L~L~~N~l~~lp--------~~l~~L~~L~Ls~N 151 (622)
T 3g06_A 99 --L---------PPGLLELSIFSNPLTHLP-----A---LPSGLCKLWIFGNQLTSLP--------VLPPGLQELSVSDN 151 (622)
T ss_dssp --C---------CTTCCEEEECSCCCCCCC-----C---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSS
T ss_pred --C---------CCCCCEEECcCCcCCCCC-----C---CCCCcCEEECCCCCCCcCC--------CCCCCCCEEECcCC
Confidence 1 169999999999988631 1 3578999999999987521 22489999999999
Q ss_pred CCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEe
Q 008809 294 MTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVY 373 (552)
Q Consensus 294 ~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~ 373 (552)
.+.. ++. ..++|+.|++++|.++. ++ ..+++|+.|++++|.++. ++ ...++|+.|+
T Consensus 152 ~l~~-----l~~---~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~-----l~---~~~~~L~~L~ 207 (622)
T 3g06_A 152 QLAS-----LPA---LPSELCKLWAYNNQLTS-----LP---MLPSGLQELSVSDNQLAS-----LP---TLPSELYKLW 207 (622)
T ss_dssp CCSC-----CCC---CCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEE
T ss_pred cCCC-----cCC---ccCCCCEEECCCCCCCC-----Cc---ccCCCCcEEECCCCCCCC-----CC---CccchhhEEE
Confidence 9876 332 35789999999999886 33 456899999999999875 22 2357899999
Q ss_pred cCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCC
Q 008809 374 LSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHD 453 (552)
Q Consensus 374 L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~ 453 (552)
+++|.++... ...++|+.|++++|.++... ..+++|+.|+|++|.|+.- .. .++
T Consensus 208 L~~N~l~~l~---------~~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~l-----p~----~~~ 261 (622)
T 3g06_A 208 AYNNRLTSLP---------ALPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSL-----PM----LPS 261 (622)
T ss_dssp CCSSCCSSCC---------CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-----CC----CCT
T ss_pred CcCCcccccC---------CCCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcC-----Cc----ccc
Confidence 9999988521 12478999999999998633 2348999999999998742 11 467
Q ss_pred CccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhc
Q 008809 454 QLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKN 507 (552)
Q Consensus 454 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 507 (552)
+|+.|+|++|.|+. ++..+..+++|+.|+|++|+++......+...-..
T Consensus 262 ~L~~L~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 262 GLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp TCCEEECCSSCCCS-----CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred cCcEEeCCCCCCCc-----CCHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 99999999999984 56667889999999999999998888877766543
No 66
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=8.7e-22 Score=196.23 Aligned_cols=229 Identities=19% Similarity=0.213 Sum_probs=178.1
Q ss_pred CCccEEEcCCCCCCH--HHHHHHHHHHhcCCCccEEEeeC-CCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHH
Q 008809 227 SVLKSLNLSDNALGE--KGVRAFGALLESQSSLEELYLMN-DGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAI 303 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 303 (552)
.++++|+|++|.+.. . ++..+..+++|++|++++ |.+++..+. .+..+++|++|+|++|.+.. .+
T Consensus 50 ~~l~~L~L~~~~l~~~~~----~~~~l~~l~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~----~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP----IPSSLANLPYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSG----AI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEE----CCGGGGGCTTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEE----EC
T ss_pred ceEEEEECCCCCccCCcc----cChhHhCCCCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCC----cC
Confidence 367788888887764 2 334566779999999995 877643332 34567899999999999873 15
Q ss_pred HHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCC-cccEEecCCCCCCch
Q 008809 304 SDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYA-DLTEVYLSYLNLEDD 382 (552)
Q Consensus 304 ~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~-~L~~L~L~~n~l~~~ 382 (552)
+..+..+++|++|++++|.+... ++..+..+++|+.|++++|.++.. ++..+..++ .|+.|++++|.+...
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGT----LPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred CHHHhCCCCCCEEeCCCCccCCc----CChHHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeecc
Confidence 66788899999999999998743 567788999999999999999743 466778887 999999999998754
Q ss_pred HHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccC
Q 008809 383 GTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSS 462 (552)
Q Consensus 383 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~ 462 (552)
.+..+. . +. |+.|++++|.++...+. .+..+++|+.|+|++|.++.... .+. .+++|++|+|++
T Consensus 190 ~~~~~~----~-l~-L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~-----~~~-~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 190 IPPTFA----N-LN-LAFVDLSRNMLEGDASV----LFGSDKNTQKIHLAKNSLAFDLG-----KVG-LSKNLNGLDLRN 253 (313)
T ss_dssp CCGGGG----G-CC-CSEEECCSSEEEECCGG----GCCTTSCCSEEECCSSEECCBGG-----GCC-CCTTCCEEECCS
T ss_pred CChHHh----C-Cc-ccEEECcCCcccCcCCH----HHhcCCCCCEEECCCCceeeecC-----ccc-ccCCCCEEECcC
Confidence 433332 2 34 99999999998875443 34556999999999999874322 133 789999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008809 463 NFIRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 463 n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
|.|++. ++..+..+++|+.|+|++|+|++
T Consensus 254 N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 254 NRIYGT----LPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp SCCEEC----CCGGGGGCTTCCEEECCSSEEEE
T ss_pred CcccCc----CChHHhcCcCCCEEECcCCcccc
Confidence 999754 55667789999999999999863
No 67
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=9.8e-21 Score=189.81 Aligned_cols=133 Identities=18% Similarity=0.188 Sum_probs=69.8
Q ss_pred CCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHH
Q 008809 338 CTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVIS 417 (552)
Q Consensus 338 ~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 417 (552)
+++|+.|++++|.++. ++..+..+++|+.|++++|.+... ...+. .+++|++|++++|.+....+.
T Consensus 182 l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~l-----~~~l~-~l~~L~~L~Ls~n~~~~~~p~--- 247 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSAL-----GPAIH-HLPKLEELDLRGCTALRNYPP--- 247 (328)
T ss_dssp STTCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEESSCCCCC-----CGGGG-GCTTCCEEECTTCTTCCBCCC---
T ss_pred CCCCCEEECcCCCcCc-----chHhhcCCCCCCEEEccCCCCCcC-----chhhc-cCCCCCEEECcCCcchhhhHH---
Confidence 5555555555555542 344455555555555555555531 11111 245566666666555443322
Q ss_pred HHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008809 418 ACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 418 ~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
.+..+++|+.|+|++|.+.... ...+. .+++|+.|+|++|.+... ++..+..+++|+.+++..|.+.
T Consensus 248 -~~~~l~~L~~L~L~~n~~~~~~----p~~~~-~l~~L~~L~L~~n~~~~~----iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 248 -IFGGRAPLKRLILKDCSNLLTL----PLDIH-RLTQLEKLDLRGCVNLSR----LPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp -CTTCCCCCCEEECTTCTTCCBC----CTTGG-GCTTCCEEECTTCTTCCC----CCGGGGGSCTTCEEECCGGGSC
T ss_pred -HhcCCCCCCEEECCCCCchhhc----chhhh-cCCCCCEEeCCCCCchhh----ccHHHhhccCceEEeCCHHHHH
Confidence 2333466666666666544321 22233 566666666666655433 4555566677777776666543
No 68
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.76 E-value=5.4e-18 Score=153.81 Aligned_cols=151 Identities=12% Similarity=0.159 Sum_probs=135.2
Q ss_pred HHHHHHHccCCcccEEecCCC-CCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCC
Q 008809 357 VALSKALSNYADLTEVYLSYL-NLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENE 435 (552)
Q Consensus 357 ~~L~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 435 (552)
..+...+...+.|+.|+|++| .|++.|+..++.+++. .++|+.|+|++|.|++.++..|+.+|..+++|++|+|++|.
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 356777888899999999986 9999999999999986 58999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhCCCCccEEEccCC---CCCHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHhcCccc
Q 008809 436 LKDDGAIQISKALEQGHDQLKVVDMSSN---FIRRAGARQLAQVVIQKPGFKQLNIDANIISEEGIDEVKEIFKNSPDM 511 (552)
Q Consensus 436 l~d~g~~~l~~~L~~~~~~L~~L~Ls~n---~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~~~ 511 (552)
|++.|+..|+++|. .+++|++|+|++| .|++.|..++++++..+++|+.|+++.|.++. ...+.++++.|...
T Consensus 110 Ig~~Ga~ala~aL~-~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~--~~~ia~aL~~N~~~ 185 (197)
T 1pgv_A 110 LTPELLARLLRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA--RHRVSEALERNYER 185 (197)
T ss_dssp CCHHHHHHHHHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH--HHHHHHHHHhcchH
Confidence 99999999999999 8899999999865 78999999999999999999999999887643 34688888877544
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=7.6e-20 Score=193.28 Aligned_cols=236 Identities=22% Similarity=0.200 Sum_probs=130.0
Q ss_pred cCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 008809 194 SQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAAR 273 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 273 (552)
++|++|+|++|.++...+..+..+ ++|++|+|++|.++.... +..+++|+.|+|++|.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l---------~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~---- 94 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPF---------TKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQE---- 94 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTC---------TTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEE----
T ss_pred CCccEEEeeCCcCCCCCHHHHhCC---------CCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCC----
Confidence 367777777776665544333322 567777777776654311 4455667777777776643
Q ss_pred HHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCCh
Q 008809 274 AVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGV 353 (552)
Q Consensus 274 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 353 (552)
+...++|++|++++|.+.. ++ ...+++|+.|++++|.++.. .+..++.+++|+.|+|++|.++.
T Consensus 95 -----l~~~~~L~~L~L~~N~l~~-----~~--~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 95 -----LLVGPSIETLHAANNNISR-----VS--CSRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp -----EEECTTCCEEECCSSCCCC-----EE--ECCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCE
T ss_pred -----CCCCCCcCEEECcCCcCCC-----CC--ccccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCC
Confidence 2223566777777776654 11 12345666666666666653 23345556666666666666654
Q ss_pred HHHHHHHHHHc-cCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEcc
Q 008809 354 EAGVALSKALS-NYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLA 432 (552)
Q Consensus 354 ~~~~~L~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 432 (552)
.. +..+. .+++|+.|+|++|.+++... . ..+++|+.|+|++|.++...+. +..+++|+.|+|+
T Consensus 159 ~~----~~~l~~~l~~L~~L~Ls~N~l~~~~~------~-~~l~~L~~L~Ls~N~l~~~~~~-----~~~l~~L~~L~Ls 222 (487)
T 3oja_A 159 VN----FAELAASSDTLEHLNLQYNFIYDVKG------Q-VVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLR 222 (487)
T ss_dssp EE----GGGGGGGTTTCCEEECTTSCCCEEEC------C-CCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECT
T ss_pred cC----hHHHhhhCCcccEEecCCCccccccc------c-ccCCCCCEEECCCCCCCCCCHh-----HcCCCCccEEEec
Confidence 21 22332 45666666666666665311 0 1245666666666666653321 2333666666666
Q ss_pred CCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEec
Q 008809 433 ENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNID 489 (552)
Q Consensus 433 ~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~ 489 (552)
+|.|+. ++..+. .+++|+.|++++|.+... .++..+..++.|+.|++.
T Consensus 223 ~N~l~~-----lp~~l~-~l~~L~~L~l~~N~l~c~---~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 223 NNKLVL-----IEKALR-FSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TSCCCE-----ECTTCC-CCTTCCEEECTTCCBCHH---HHHHHHTTCHHHHHHHHH
T ss_pred CCcCcc-----cchhhc-cCCCCCEEEcCCCCCcCc---chHHHHHhCCCCcEEecc
Confidence 666653 122233 456666666666666532 234444455555555443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=3.1e-20 Score=196.29 Aligned_cols=244 Identities=19% Similarity=0.170 Sum_probs=158.4
Q ss_pred HhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCC
Q 008809 157 LRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSD 236 (552)
Q Consensus 157 l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~ 236 (552)
+..+...+++++.|+|++|.++......+. . .++|++|+|++|.+....+ +.. .++|++|+|++
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~Ls~N~l~~~~~--l~~---------l~~L~~L~Ls~ 89 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLA----P-FTKLELLNLSSNVLYETLD--LES---------LSTLRTLDLNN 89 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGT----T-CTTCCEEECTTSCCEEEEE--CTT---------CTTCCEEECCS
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHh----C-CCCCCEEEeeCCCCCCCcc--ccc---------CCCCCEEEecC
Confidence 333333335788888888887643322221 1 3688888888887764332 211 26888888888
Q ss_pred CCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEE
Q 008809 237 NALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDF 316 (552)
Q Consensus 237 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 316 (552)
|.++.. ...++|+.|++++|.|+...+ ..+++|+.|+|++|.++.. .+..+..+++|+.|
T Consensus 90 N~l~~l---------~~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L 149 (487)
T 3oja_A 90 NYVQEL---------LVGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYL 149 (487)
T ss_dssp SEEEEE---------EECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEE
T ss_pred CcCCCC---------CCCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCC----CchhhcCCCCCCEE
Confidence 877652 223778888888888765421 2357788888888888761 23345667888888
Q ss_pred EeeCCCCChHHHHHHHHHhh-cCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCC
Q 008809 317 RCSSTRIGSEGGTALSEALE-SCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSA 395 (552)
Q Consensus 317 ~ls~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 395 (552)
++++|.++.. .+..+. .+++|+.|+|++|.++.. ..+..+++|+.|+|++|.++..... +. .+
T Consensus 150 ~Ls~N~l~~~----~~~~l~~~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~-~l 213 (487)
T 3oja_A 150 DLKLNEIDTV----NFAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMGPE-----FQ-SA 213 (487)
T ss_dssp ECTTSCCCEE----EGGGGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEECGG-----GG-GG
T ss_pred ECCCCCCCCc----ChHHHhhhCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCCCCHh-----Hc-CC
Confidence 8888888764 233443 577888888888888762 2334578888888888888763322 22 25
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEcc
Q 008809 396 PLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMS 461 (552)
Q Consensus 396 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls 461 (552)
++|+.|++++|.++... ..+..+++|+.|++++|.+.... +...+. .++.|+.|+++
T Consensus 214 ~~L~~L~Ls~N~l~~lp-----~~l~~l~~L~~L~l~~N~l~c~~---~~~~~~-~l~~L~~l~~~ 270 (487)
T 3oja_A 214 AGVTWISLRNNKLVLIE-----KALRFSQNLEHFDLRGNGFHCGT---LRDFFS-KNQRVQTVAKQ 270 (487)
T ss_dssp TTCSEEECTTSCCCEEC-----TTCCCCTTCCEEECTTCCBCHHH---HHHHHT-TCHHHHHHHHH
T ss_pred CCccEEEecCCcCcccc-----hhhccCCCCCEEEcCCCCCcCcc---hHHHHH-hCCCCcEEecc
Confidence 78888888888887522 22455578888888888877332 233333 56666666654
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.9e-19 Score=179.00 Aligned_cols=244 Identities=15% Similarity=0.085 Sum_probs=108.5
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
..++.+.++++.++......+...+.. .+|++|+|++|.+....+..+. . ...++|++|+|++|.++....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~-----~--~~~~~L~~L~Ls~n~i~~~~~ 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY--SRLKELTLEDLKITGTMPPLPL-----E--ATGLALSSLRLRNVSWATGRS 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH--SCCCEEEEESCCCBSCCCCCSS-----S--CCCBCCSSCEEESCCCSSTTS
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc--CceeEEEeeCCEeccchhhhhh-----h--ccCCCCCEEEeecccccchhh
Confidence 457778888887776555544444433 4577777777765433221110 0 011456666666665553211
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCC
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~ 324 (552)
..-...+..+++|++|+|++|.++...+ ..+..+++|++|+|++|.+..
T Consensus 135 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~--------------------------- 183 (310)
T 4glp_A 135 WLAELQQWLKPGLKVLSIAQAHSPAFSC----EQVRAFPALTSLDLSDNPGLG--------------------------- 183 (310)
T ss_dssp SHHHHHTTBCSCCCEEEEECCSSCCCCT----TSCCCCTTCCEEECCSCTTCH---------------------------
T ss_pred hhHHHHhhhccCCCEEEeeCCCcchhhH----HHhccCCCCCEEECCCCCCcc---------------------------
Confidence 0001112234555555555555532211 122334455555555554432
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHH-HHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEc
Q 008809 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSK-ALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLEL 403 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L 403 (552)
.........+..+++|+.|++++|.++.-. ..+. .+..+++|++|+|++|.+++..+..+.. + ..+++|++|++
T Consensus 184 -~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~-~-~~~~~L~~L~L 258 (310)
T 4glp_A 184 -ERGLMAALCPHKFPAIQNLALRNTGMETPT--GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR-C-MWSSALNSLNL 258 (310)
T ss_dssp -HHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS-C-CCCTTCCCEEC
T ss_pred -chhhhHHHhhhcCCCCCEEECCCCCCCchH--HHHHHHHhcCCCCCEEECCCCCCCccchhhHHh-c-cCcCcCCEEEC
Confidence 211101111234445555555555554211 1111 1234455555555555554421111100 0 00145566666
Q ss_pred cCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCH
Q 008809 404 AGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRR 467 (552)
Q Consensus 404 s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~ 467 (552)
++|.++. .+..+ .++|+.|+|++|.|+... .+. .+++|+.|+|++|.|++
T Consensus 259 s~N~l~~-lp~~~------~~~L~~L~Ls~N~l~~~~------~~~-~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 259 SFAGLEQ-VPKGL------PAKLRVLDLSSNRLNRAP------QPD-ELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSSCCCS-CCSCC------CSCCSCEECCSCCCCSCC------CTT-SCCCCSCEECSSTTTSC
T ss_pred CCCCCCc-hhhhh------cCCCCEEECCCCcCCCCc------hhh-hCCCccEEECcCCCCCC
Confidence 6665552 11111 145666666666655310 012 45666666666666654
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=3.1e-20 Score=194.05 Aligned_cols=226 Identities=19% Similarity=0.207 Sum_probs=120.4
Q ss_pred CccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH-H
Q 008809 228 VLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD-V 306 (552)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~ 306 (552)
+++.|+|++|.+..... ..+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|.+.. ++. .
T Consensus 65 ~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~----~~~~~l~~L~~L~L~~n~l~~-----~~~~~ 131 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIEI----GAFNGLANLNTLELFDNRLTT-----IPNGA 131 (440)
T ss_dssp TCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEECG----GGGTTCSSCCEEECCSSCCSS-----CCTTT
T ss_pred CCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccCh----hhccCCccCCEEECCCCcCCe-----eCHhH
Confidence 45555555555544321 223344555666666555543221 123344556666666665553 222 3
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCC-CChHHHHHHHHHHccCCcccEEecCCCCCCchHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNM-FGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTV 385 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~ 385 (552)
+..+++|+.|++++|++... ....+..+++|+.|++++|. ++... ...+..+++|+.|++++|.++...
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~-- 201 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYIS----EGAFEGLSNLRYLNLAMCNLREIP-- 201 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred hhccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCcceeC----cchhhcccccCeecCCCCcCcccc--
Confidence 44556666666666665532 11234456666666666633 32210 123455666666666666665421
Q ss_pred HHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCC
Q 008809 386 AITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465 (552)
Q Consensus 386 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i 465 (552)
.+ ..+++|+.|+|++|.++...+.. +..+++|+.|+|++|.|+..... .+. .+++|+.|+|++|.|
T Consensus 202 ----~~-~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~----~~~-~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 202 ----NL-TPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERN----AFD-NLQSLVEINLAHNNL 267 (440)
T ss_dssp ----CC-TTCSSCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTT----SST-TCTTCCEEECTTSCC
T ss_pred ----cc-CCCcccCEEECCCCccCccChhh----hccCccCCEEECCCCceeEEChh----hhc-CCCCCCEEECCCCCC
Confidence 11 22566777777777766544322 33446777777777776653322 222 566777777777776
Q ss_pred CHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008809 466 RRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 466 ~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
+... ...+..+++|+.|+|++|++.
T Consensus 268 ~~~~----~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLP----HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCC----TTTTSSCTTCCEEECCSSCEE
T ss_pred CccC----hhHhccccCCCEEEcCCCCcc
Confidence 6432 223345677777777777754
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=2.9e-20 Score=185.10 Aligned_cols=263 Identities=17% Similarity=0.142 Sum_probs=173.5
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCch-HHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPE-AEALEVMAIFSAALEGSVLKSLNLSDNALGEKG 243 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~-~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~ 243 (552)
++++.+++++|.+ ... ..+. ..|+.|+|++|.+.... +.... .. .......++|++|+|++|.++...
T Consensus 43 ~~L~~l~l~~n~l-~~p-~~~~-------~~L~~L~L~~n~l~~~~~~~~~~-~~-~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADL-GQFT-------DIIKSLSLKRLTVRAARIPSRIL-FG-ALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EECTTHHHHCCTT-CCC-HHHH-------HHHHHCCCCEEEEEEEECBHHHH-HH-HHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred CCceeEeeccccc-ccH-HHHH-------HHHhhcccccccccCCCcCHHHH-HH-HHHhcCcCCccEEEccCCcccchh
Confidence 4567777788877 211 1111 22666777777664321 11110 00 111223378999999999887532
Q ss_pred HHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcC-CCCCccEEEcccCCCChHHHHHHH-HHhhcCCCccEEEeeCC
Q 008809 244 VRAFGALLESQSSLEELYLMNDGISKEAARAVCELIP-STEKLRVLQFHNNMTGDEGAQAIS-DVVKHSPLLEDFRCSST 321 (552)
Q Consensus 244 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~ls~n 321 (552)
...+ ++..+++|+.|+|++|.+++. +..+..... .+++|++|+|++|.+.. ++ ..+..+++|+.|++++|
T Consensus 112 ~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 112 PPPL--LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN-----FSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp CCCS--SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC-----CCTTTCCCCSSCCEEECCSC
T ss_pred HHHH--HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc-----chHHHhccCCCCCEEECCCC
Confidence 2111 125668899999999998765 333333311 24789999999998876 33 55778899999999999
Q ss_pred CCChHHHHHHHHHh--hcCCCCCEEecCCCCCChHHHHHHH-HHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCc
Q 008809 322 RIGSEGGTALSEAL--ESCTHLKKLDLRDNMFGVEAGVALS-KALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLL 398 (552)
Q Consensus 322 ~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~L~-~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L 398 (552)
++... ..++..+ ..+++|+.|++++|.++... .++ ..+..+++|+.|++++|.+.+..... ....+++|
T Consensus 184 ~l~~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L 255 (312)
T 1wwl_A 184 PELGE--RGLISALCPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAAGAP----SCDWPSQL 255 (312)
T ss_dssp TTCHH--HHHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSCCCS----CCCCCTTC
T ss_pred CcCcc--hHHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCcccchh----hhhhcCCC
Confidence 97643 1234444 77899999999999998421 123 34467899999999999988743110 11225789
Q ss_pred cEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHH
Q 008809 399 EVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRA 468 (552)
Q Consensus 399 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~ 468 (552)
++|++++|.++. .+.. +. ++|+.|+|++|.|++. . .+. .+++|+.|++++|.|++.
T Consensus 256 ~~L~Ls~N~l~~-ip~~----~~--~~L~~L~Ls~N~l~~~-----p-~~~-~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 256 NSLNLSFTGLKQ-VPKG----LP--AKLSVLDLSYNRLDRN-----P-SPD-ELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEECTTSCCSS-CCSS----CC--SEEEEEECCSSCCCSC-----C-CTT-TSCEEEEEECTTCTTTCC
T ss_pred CEEECCCCccCh-hhhh----cc--CCceEEECCCCCCCCC-----h-hHh-hCCCCCEEeccCCCCCCC
Confidence 999999999884 2221 22 6899999999999864 1 134 789999999999998753
No 74
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=4.2e-20 Score=193.76 Aligned_cols=226 Identities=19% Similarity=0.171 Sum_probs=133.1
Q ss_pred CccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHH-HH
Q 008809 228 VLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAIS-DV 306 (552)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~ 306 (552)
+|++|+|++|.+..... ..+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|.+.. ++ ..
T Consensus 76 ~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~-----~~~~~ 142 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQA----DTFRHLHHLEVLQLGRNSIRQIEV----GAFNGLASLNTLELFDNWLTV-----IPSGA 142 (452)
T ss_dssp TCSEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCSB-----CCTTT
T ss_pred CccEEECcCCcCceECH----HHcCCCCCCCEEECCCCccCCcCh----hhccCcccCCEEECCCCcCCc-----cChhh
Confidence 56666666666554321 223344666666666666654321 123445666666666666654 22 22
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCC-CChHHHHHHHHHHccCCcccEEecCCCCCCchHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNM-FGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTV 385 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~ 385 (552)
+..+++|++|++++|++... ....+..+++|+.|++++|. ++... ...+..+++|+.|++++|.+....
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~-- 212 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYIS----EGAFEGLFNLKYLNLGMCNIKDMP-- 212 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCTTCCEEECTTSCCSSCC--
T ss_pred hcccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCccccC----hhhccCCCCCCEEECCCCcccccc--
Confidence 45566777777777766542 12245566777777777643 33210 123556677777777777766521
Q ss_pred HHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCC
Q 008809 386 AITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465 (552)
Q Consensus 386 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i 465 (552)
.+ ..+++|+.|+|++|.++...+.. +..+++|+.|+|++|.++..... .+. .+++|+.|+|++|.|
T Consensus 213 ----~~-~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~----~~~-~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 213 ----NL-TPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLWVMNSQVSLIERN----AFD-GLASLVELNLAHNNL 278 (452)
T ss_dssp ----CC-TTCTTCCEEECTTSCCSEECGGG----GTTCTTCCEEECTTSCCCEECTT----TTT-TCTTCCEEECCSSCC
T ss_pred ----cc-cccccccEEECcCCcCcccCccc----ccCccCCCEEEeCCCcCceECHH----Hhc-CCCCCCEEECCCCcC
Confidence 11 23567788888888777654433 34447788888888877654322 233 677888888888877
Q ss_pred CHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008809 466 RRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 466 ~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
+... ...+..+++|+.|+|++|++.
T Consensus 279 ~~~~----~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 279 SSLP----HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SCCC----TTSSTTCTTCCEEECCSSCEE
T ss_pred CccC----hHHhccccCCCEEEccCCCcC
Confidence 6532 223445777888888888754
No 75
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=1e-19 Score=182.37 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=75.5
Q ss_pred CCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHH
Q 008809 310 SPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITN 389 (552)
Q Consensus 310 ~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 389 (552)
+++|+.|++++|+++. ++..+..+++|+.|++++|.++. ++..+..+++|+.|++++|.+....+..+
T Consensus 182 l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-- 249 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYPPIF-- 249 (328)
T ss_dssp STTCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCBCCCCT--
T ss_pred CCCCCEEECcCCCcCc-----chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhhhHHHh--
Confidence 5666666666666652 44556666666666666666654 34445666666666666665544322111
Q ss_pred HHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCC
Q 008809 390 ALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465 (552)
Q Consensus 390 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i 465 (552)
..+++|+.|++++|.+....+.. +..+++|+.|+|++|.+... ++..+. .+++|+.+++..+.+
T Consensus 250 ---~~l~~L~~L~L~~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~----iP~~l~-~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 250 ---GGRAPLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRGCVNLSR----LPSLIA-QLPANCIILVPPHLQ 313 (328)
T ss_dssp ---TCCCCCCEEECTTCTTCCBCCTT----GGGCTTCCEEECTTCTTCCC----CCGGGG-GSCTTCEEECCGGGS
T ss_pred ---cCCCCCCEEECCCCCchhhcchh----hhcCCCCCEEeCCCCCchhh----ccHHHh-hccCceEEeCCHHHH
Confidence 12566777777776655544333 33446777777777665442 233344 566777777766644
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=5.3e-20 Score=193.00 Aligned_cols=245 Identities=18% Similarity=0.172 Sum_probs=166.8
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHH
Q 008809 167 YTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRA 246 (552)
Q Consensus 167 l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 246 (552)
...++.+++.++. +....+++++.|+|++|.+....+..+..+ ++|++|+|++|.++....
T Consensus 56 ~~~v~c~~~~l~~--------iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l---------~~L~~L~Ls~n~i~~~~~-- 116 (452)
T 3zyi_A 56 FSKVVCTRRGLSE--------VPQGIPSNTRYLNLMENNIQMIQADTFRHL---------HHLEVLQLGRNSIRQIEV-- 116 (452)
T ss_dssp SCEEECCSSCCSS--------CCSCCCTTCSEEECCSSCCCEECTTTTTTC---------TTCCEEECCSSCCCEECT--
T ss_pred CcEEEECCCCcCc--------cCCCCCCCccEEECcCCcCceECHHHcCCC---------CCCCEEECCCCccCCcCh--
Confidence 3456666665542 112224678888888887766544444333 688888888888876422
Q ss_pred HHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHH-HHhhcCCCccEEEeeCCC-CC
Q 008809 247 FGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAIS-DVVKHSPLLEDFRCSSTR-IG 324 (552)
Q Consensus 247 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~ls~n~-l~ 324 (552)
..+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|.+.. ++ ..+..+++|+.|++++|. ++
T Consensus 117 --~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 117 --GAFNGLASLNTLELFDNWLTVIPS----GAFEYLSKLRELWLRNNPIES-----IPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp --TTTTTCTTCCEEECCSSCCSBCCT----TTSSSCTTCCEEECCSCCCCE-----ECTTTTTTCTTCCEEECCCCTTCC
T ss_pred --hhccCcccCCEEECCCCcCCccCh----hhhcccCCCCEEECCCCCcce-----eCHhHHhcCCcccEEeCCCCCCcc
Confidence 334556888888888888764321 234567888888888888875 32 246678888999988844 44
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEcc
Q 008809 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELA 404 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 404 (552)
.. -...+..+++|+.|+|++|.++.. ..+..+++|+.|+|++|.+.......+ ..+++|+.|+++
T Consensus 186 ~i----~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~ 250 (452)
T 3zyi_A 186 YI----SEGAFEGLFNLKYLNLGMCNIKDM------PNLTPLVGLEELEMSGNHFPEIRPGSF-----HGLSSLKKLWVM 250 (452)
T ss_dssp EE----CTTTTTTCTTCCEEECTTSCCSSC------CCCTTCTTCCEEECTTSCCSEECGGGG-----TTCTTCCEEECT
T ss_pred cc----ChhhccCCCCCCEEECCCCccccc------ccccccccccEEECcCCcCcccCcccc-----cCccCCCEEEeC
Confidence 32 112466788899999999988762 246778889999999998887543322 236889999999
Q ss_pred CCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCC
Q 008809 405 GNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465 (552)
Q Consensus 405 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i 465 (552)
+|.++...+.. +..+++|+.|+|++|.|+..... .+. .+++|+.|+|++|.+
T Consensus 251 ~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~----~~~-~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 251 NSQVSLIERNA----FDGLASLVELNLAHNNLSSLPHD----LFT-PLRYLVELHLHHNPW 302 (452)
T ss_dssp TSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCTT----SST-TCTTCCEEECCSSCE
T ss_pred CCcCceECHHH----hcCCCCCCEEECCCCcCCccChH----Hhc-cccCCCEEEccCCCc
Confidence 99888755433 44558899999999988753221 223 678899999999865
No 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=4.8e-20 Score=192.65 Aligned_cols=259 Identities=17% Similarity=0.165 Sum_probs=171.7
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHH
Q 008809 167 YTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRA 246 (552)
Q Consensus 167 l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 246 (552)
...++.+++.+.. +......+++.|+|++|.+.......+..+ ++|++|+|++|.+.....
T Consensus 45 ~~~v~c~~~~l~~--------iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l---------~~L~~L~Ls~n~i~~i~~-- 105 (440)
T 3zyj_A 45 FSKVICVRKNLRE--------VPDGISTNTRLLNLHENQIQIIKVNSFKHL---------RHLEILQLSRNHIRTIEI-- 105 (440)
T ss_dssp SCEEECCSCCCSS--------CCSCCCTTCSEEECCSCCCCEECTTTTSSC---------SSCCEEECCSSCCCEECG--
T ss_pred CCEEEeCCCCcCc--------CCCCCCCCCcEEEccCCcCCeeCHHHhhCC---------CCCCEEECCCCcCCccCh--
Confidence 3456666665542 112224677888888877766544333322 688888888888876432
Q ss_pred HHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHH-HHhhcCCCccEEEeeCCC-CC
Q 008809 247 FGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAIS-DVVKHSPLLEDFRCSSTR-IG 324 (552)
Q Consensus 247 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~ls~n~-l~ 324 (552)
..+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|.+.. ++ ..+..+++|+.|++++|. ++
T Consensus 106 --~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~i~~-----~~~~~~~~l~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 106 --GAFNGLANLNTLELFDNRLTTIPN----GAFVYLSKLKELWLRNNPIES-----IPSYAFNRIPSLRRLDLGELKRLS 174 (440)
T ss_dssp --GGGTTCSSCCEEECCSSCCSSCCT----TTSCSCSSCCEEECCSCCCCE-----ECTTTTTTCTTCCEEECCCCTTCC
T ss_pred --hhccCCccCCEEECCCCcCCeeCH----hHhhccccCceeeCCCCcccc-----cCHHHhhhCcccCEeCCCCCCCcc
Confidence 334556888888888888764321 235567888888888888875 32 246678888889888854 44
Q ss_pred hHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEcc
Q 008809 325 SEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELA 404 (552)
Q Consensus 325 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 404 (552)
.. -...+..+++|+.|++++|.++. ++ .+..+++|+.|+|++|.+.......+ ..+++|+.|+++
T Consensus 175 ~i----~~~~~~~l~~L~~L~L~~n~l~~-----~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~ 239 (440)
T 3zyj_A 175 YI----SEGAFEGLSNLRYLNLAMCNLRE-----IP-NLTPLIKLDELDLSGNHLSAIRPGSF-----QGLMHLQKLWMI 239 (440)
T ss_dssp EE----CTTTTTTCSSCCEEECTTSCCSS-----CC-CCTTCSSCCEEECTTSCCCEECTTTT-----TTCTTCCEEECT
T ss_pred ee----CcchhhcccccCeecCCCCcCcc-----cc-ccCCCcccCEEECCCCccCccChhhh-----ccCccCCEEECC
Confidence 31 11246678889999999998875 22 46778889999999998886433322 236889999999
Q ss_pred CCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC-HHHHHHHHHHHhc
Q 008809 405 GNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR-RAGARQLAQVVIQ 479 (552)
Q Consensus 405 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~-~~g~~~l~~~l~~ 479 (552)
+|.++...+.. +..+++|+.|+|++|.|+..... .+. .+++|+.|+|++|.+. +.....+..++..
T Consensus 240 ~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~----~~~-~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~ 306 (440)
T 3zyj_A 240 QSQIQVIERNA----FDNLQSLVEINLAHNNLTLLPHD----LFT-PLHHLERIHLHHNPWNCNCDILWLSWWIKD 306 (440)
T ss_dssp TCCCCEECTTS----STTCTTCCEEECTTSCCCCCCTT----TTS-SCTTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred CCceeEEChhh----hcCCCCCCEEECCCCCCCccChh----Hhc-cccCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence 99888765433 44558899999999988753322 223 6788999999998753 2223445555543
No 78
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=9.4e-20 Score=178.93 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=39.0
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHH
Q 008809 395 APLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLA 474 (552)
Q Consensus 395 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~ 474 (552)
+++|++|++++|.++...... +..+++|+.|+|++|.++...+. .+. .+++|+.|++++|.|+... .
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~----~~~-~l~~L~~L~l~~n~l~~~~----~ 218 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERA----FRGLHSLDRLLLHQNRVAHVHPH----AFR-DLGRLMTLYLFANNLSALP----T 218 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTT----TTT-TCTTCCEEECCSSCCSCCC----H
T ss_pred CCCccEEECCCCcccccCHHH----hcCccccCEEECCCCcccccCHh----Hcc-CcccccEeeCCCCcCCcCC----H
Confidence 344445555444444322211 22234555555555555442221 122 4455555555555554421 1
Q ss_pred HHHhcCCCccEEEecCCCCC
Q 008809 475 QVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 475 ~~l~~~~~L~~L~L~~N~i~ 494 (552)
..+..+++|+.|++++|++.
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEE
T ss_pred HHcccCcccCEEeccCCCcc
Confidence 22334555555555555543
No 79
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.8e-19 Score=176.89 Aligned_cols=237 Identities=15% Similarity=0.105 Sum_probs=180.3
Q ss_pred ccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHH
Q 008809 196 LKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAV 275 (552)
Q Consensus 196 L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 275 (552)
-+.++.+++.+...+... .++|++|+|++|.++.... ..+..+++|++|++++|.++...+
T Consensus 13 ~~~~~c~~~~l~~ip~~~------------~~~l~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~--- 73 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI------------PAASQRIFLHGNRISHVPA----ASFRACRNLTILWLHSNVLARIDA--- 73 (285)
T ss_dssp SCEEECCSSCCSSCCTTC------------CTTCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCEECT---
T ss_pred CeEEEcCcCCcccCCcCC------------CCCceEEEeeCCcCCccCH----HHcccCCCCCEEECCCCccceeCH---
Confidence 478999998887764322 1689999999999987532 345667999999999999875432
Q ss_pred HHhcCCCCCccEEEcccCC-CChHHHHHH-HHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCCh
Q 008809 276 CELIPSTEKLRVLQFHNNM-TGDEGAQAI-SDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGV 353 (552)
Q Consensus 276 ~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l-~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 353 (552)
..+..+++|++|+|++|. ++. + +..+..+++|++|++++|.++.. .+..+..+++|+.|++++|.++.
T Consensus 74 -~~~~~l~~L~~L~l~~n~~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 74 -AAFTGLALLEQLDLSDNAQLRS-----VDPATFHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp -TTTTTCTTCCEEECCSCTTCCC-----CCTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCC
T ss_pred -hhcCCccCCCEEeCCCCCCccc-----cCHHHhcCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccc
Confidence 245667999999999997 765 3 44577889999999999998763 34567789999999999999886
Q ss_pred HHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccC
Q 008809 354 EAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAE 433 (552)
Q Consensus 354 ~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 433 (552)
.. ...+..+++|+.|++++|.++......+ ..+++|++|++++|.++...+.. +..+++|+.|+|++
T Consensus 144 ~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 144 LP----DDTFRDLGNLTHLFLHGNRISSVPERAF-----RGLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFA 210 (285)
T ss_dssp CC----TTTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCS
T ss_pred cC----HhHhccCCCccEEECCCCcccccCHHHh-----cCccccCEEECCCCcccccCHhH----ccCcccccEeeCCC
Confidence 31 3347789999999999999986433222 23789999999999998865543 44569999999999
Q ss_pred CCCCchHHHHHHHHHhhCCCCccEEEccCCCCCH-HHHHHHHHHHhc
Q 008809 434 NELKDDGAIQISKALEQGHDQLKVVDMSSNFIRR-AGARQLAQVVIQ 479 (552)
Q Consensus 434 n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~-~g~~~l~~~l~~ 479 (552)
|.+++.... .+. .+++|+.|++++|.+.. .....+.+++..
T Consensus 211 n~l~~~~~~----~~~-~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~ 252 (285)
T 1ozn_A 211 NNLSALPTE----ALA-PLRALQYLRLNDNPWVCDCRARPLWAWLQK 252 (285)
T ss_dssp SCCSCCCHH----HHT-TCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred CcCCcCCHH----Hcc-cCcccCEEeccCCCccCCCCcHHHHHHHHh
Confidence 999875433 344 79999999999998752 223344444443
No 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=5.5e-18 Score=177.48 Aligned_cols=250 Identities=18% Similarity=0.159 Sum_probs=188.9
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
++++.|++++|.++... .+.. .++|++|+|++|.+...+ +. ..++|++|++++|.++...
T Consensus 42 ~~L~~L~Ls~n~l~~~~------~l~~-l~~L~~L~Ls~n~l~~~~---~~---------~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT------GIEK-LTGLTKLICTSNNITTLD---LS---------QNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp TTCCEEECCSSCCCCCT------TGGG-CTTCSEEECCSSCCSCCC---CT---------TCTTCSEEECCSSCCSCCC-
T ss_pred CCCCEEEccCCCcccCh------hhcc-cCCCCEEEccCCcCCeEc---cc---------cCCCCCEEECcCCCCceee-
Confidence 78999999999987431 1222 489999999999987752 11 1279999999999998741
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCC-C
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTR-I 323 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~-l 323 (552)
+..+++|++|++++|.++.. -+..+++|++|++++|.+.. ++ +..+++|+.|++++|+ +
T Consensus 102 ------~~~l~~L~~L~L~~N~l~~l-------~~~~l~~L~~L~l~~N~l~~-----l~--l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 102 ------VTPLTKLTYLNCDTNKLTKL-------DVSQNPLLTYLNCARNTLTE-----ID--VSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp ------CTTCTTCCEEECCSSCCSCC-------CCTTCTTCCEEECTTSCCSC-----CC--CTTCTTCCEEECTTCSCC
T ss_pred ------cCCCCcCCEEECCCCcCCee-------cCCCCCcCCEEECCCCccce-----ec--cccCCcCCEEECCCCCcc
Confidence 56779999999999999763 16778999999999999987 32 6788999999999995 4
Q ss_pred ChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEc
Q 008809 324 GSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLEL 403 (552)
Q Consensus 324 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L 403 (552)
+. + .+..+++|+.|++++|.++. ++ +..+++|+.|++++|.++... + ..+++|+.|++
T Consensus 162 ~~-----~--~~~~l~~L~~L~ls~n~l~~-----l~--l~~l~~L~~L~l~~N~l~~~~-------l-~~l~~L~~L~L 219 (457)
T 3bz5_A 162 TK-----L--DVTPQTQLTTLDCSFNKITE-----LD--VSQNKLLNRLNCDTNNITKLD-------L-NQNIQLTFLDC 219 (457)
T ss_dssp CC-----C--CCTTCTTCCEEECCSSCCCC-----CC--CTTCTTCCEEECCSSCCSCCC-------C-TTCTTCSEEEC
T ss_pred cc-----c--ccccCCcCCEEECCCCccce-----ec--cccCCCCCEEECcCCcCCeec-------c-ccCCCCCEEEC
Confidence 43 2 36678999999999999987 23 778899999999999998742 2 23789999999
Q ss_pred cCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHH------HHHHHHH
Q 008809 404 AGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGA------RQLAQVV 477 (552)
Q Consensus 404 s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~------~~l~~~l 477 (552)
++|.++... +..+++|+.|++++|.++... +. .+++|+.|++++|.+....+ ..++ +
T Consensus 220 s~N~l~~ip-------~~~l~~L~~L~l~~N~l~~~~-------~~-~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~ 282 (457)
T 3bz5_A 220 SSNKLTEID-------VTPLTQLTYFDCSVNPLTELD-------VS-TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--A 282 (457)
T ss_dssp CSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC-------CT-TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--C
T ss_pred cCCcccccC-------ccccCCCCEEEeeCCcCCCcC-------HH-HCCCCCEEeccCCCCCEEECCCCccCCccc--c
Confidence 999998732 456699999999999988642 22 45666655555554322100 0011 2
Q ss_pred hcCCCccEEEecCCCC
Q 008809 478 IQKPGFKQLNIDANII 493 (552)
Q Consensus 478 ~~~~~L~~L~L~~N~i 493 (552)
..+++|+.|++++|..
T Consensus 283 ~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQ 298 (457)
T ss_dssp TTCTTCCCCCCTTCTT
T ss_pred cccccCCEEECCCCcc
Confidence 3568999999999974
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=5.5e-18 Score=168.24 Aligned_cols=170 Identities=18% Similarity=0.266 Sum_probs=86.5
Q ss_pred CCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHH
Q 008809 282 TEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSK 361 (552)
Q Consensus 282 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~ 361 (552)
+++|++|+|++|.+.. ++. +..+++|+.|++++|+++.. ..+..+++|+.|++++|.++.. .
T Consensus 62 l~~L~~L~L~~n~i~~-----~~~-~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~ 123 (308)
T 1h6u_A 62 LNNLIGLELKDNQITD-----LAP-LKNLTKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITDV------T 123 (308)
T ss_dssp CTTCCEEECCSSCCCC-----CGG-GTTCCSCCEEECCSCCCSCC------GGGTTCTTCCEEECTTSCCCCC------G
T ss_pred cCCCCEEEccCCcCCC-----Chh-HccCCCCCEEEccCCcCCCc------hhhcCCCCCCEEECCCCCCCCc------h
Confidence 3444444444444443 222 44444555555555554431 1344455555555555555441 1
Q ss_pred HHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHH
Q 008809 362 ALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGA 441 (552)
Q Consensus 362 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~ 441 (552)
.+..+++|+.|++++|.++.... + ..+++|+.|++++|.++.... +..+++|+.|+|++|.+++...
T Consensus 124 ~l~~l~~L~~L~l~~n~l~~~~~------l-~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 124 PLAGLSNLQVLYLDLNQITNISP------L-AGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG------G-GGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG
T ss_pred hhcCCCCCCEEECCCCccCcCcc------c-cCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCCccCcChh
Confidence 24555555555555555554321 1 124556666666666554322 3444666666666666654321
Q ss_pred HHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008809 442 IQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 442 ~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
+. .+++|+.|++++|.+++.. .+..+++|+.|++++|+|+.
T Consensus 191 ------l~-~l~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 ------LA-SLPNLIEVHLKNNQISDVS------PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ------GG-GCTTCCEEECTTSCCCBCG------GGTTCTTCCEEEEEEEEEEC
T ss_pred ------hc-CCCCCCEEEccCCccCccc------cccCCCCCCEEEccCCeeec
Confidence 33 5666666666666665532 14456666666666666643
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.5e-17 Score=165.04 Aligned_cols=190 Identities=19% Similarity=0.232 Sum_probs=104.0
Q ss_pred CccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHh
Q 008809 228 VLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVV 307 (552)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 307 (552)
+|++|++++|.+... ..+..+++|+.|+|++|.+++... +..+++|++|+|++|.+.. ++ .+
T Consensus 42 ~L~~L~l~~~~i~~l------~~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~-----~~-~~ 103 (308)
T 1h6u_A 42 GITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKN-----VS-AI 103 (308)
T ss_dssp TCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSC-----CG-GG
T ss_pred CcCEEEeeCCCccCc------hhhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCC-----ch-hh
Confidence 555555555554432 123344555566665555544321 3445556666666665554 22 24
Q ss_pred hcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHH
Q 008809 308 KHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAI 387 (552)
Q Consensus 308 ~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l 387 (552)
..+++|+.|++++|+++.. + .+..+++|+.|++++|.++.. + .+..+++|+.|++++|.+.+...
T Consensus 104 ~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~~--- 168 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNI-----S-PLAGLTNLQYLSIGNAQVSDLTP--- 168 (308)
T ss_dssp TTCTTCCEEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCC-----G-GGGGCTTCCEEECCSSCCCCCGG---
T ss_pred cCCCCCCEEECCCCCCCCc-----h-hhcCCCCCCEEECCCCccCcC-----c-cccCCCCccEEEccCCcCCCChh---
Confidence 5556666666666665542 1 255566666666666666542 1 15556666666666666655322
Q ss_pred HHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCH
Q 008809 388 TNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRR 467 (552)
Q Consensus 388 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~ 467 (552)
+ ..+++|+.|++++|.++...+ +..+++|+.|+|++|.+++.. .+. .+++|+.|++++|.++.
T Consensus 169 ---l-~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~------~l~-~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 ---L-ANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVS------PLA-NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ---G-TTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG------GGT-TCTTCCEEEEEEEEEEC
T ss_pred ---h-cCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCccc------ccc-CCCCCCEEEccCCeeec
Confidence 1 225666666666666655432 444566777777777666533 133 56667777777766543
No 83
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.70 E-value=1.1e-16 Score=145.20 Aligned_cols=147 Identities=17% Similarity=0.218 Sum_probs=111.6
Q ss_pred HHHHhhcCCCCCEEecCCC-CCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCC
Q 008809 331 LSEALESCTHLKKLDLRDN-MFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDIT 409 (552)
Q Consensus 331 l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 409 (552)
+...+...+.|+.|+|++| .+++.++..+..++..++.|+.|+|++|.|++.|+..++.+|+.+ ++|++|+|++|.|+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N-~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcC-CccCeEecCCCcCC
Confidence 5566666777777777774 777777777777777777888888888888888887788777764 67888888888888
Q ss_pred cchHHHHHHHhhcCCCcCEEEccCC---CCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCC
Q 008809 410 VEAAPVISACVAAKQHLTKLNLAEN---ELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKP 481 (552)
Q Consensus 410 ~~~~~~l~~~l~~~~~L~~L~Ls~n---~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~ 481 (552)
+.++..++.+|..+++|++|+|++| .+++.|...|+++|+ .+++|++|+++.|.++.. ..+++++..+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~-~N~tL~~L~l~~~~~g~~--~~ia~aL~~N~ 183 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFASMEAR--HRVSEALERNY 183 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH-hCCCcCeEeccCCCccHH--HHHHHHHHhcc
Confidence 8888888888888888888888754 678888888888888 788888888887765543 35666665544
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=2.4e-17 Score=178.18 Aligned_cols=263 Identities=17% Similarity=0.127 Sum_probs=196.6
Q ss_pred CCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHH
Q 008809 133 ADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAE 212 (552)
Q Consensus 133 ~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~ 212 (552)
+.++.++++++.+..+. ...++|+.|++++|.++... ...++|++|+|++|.+...+.
T Consensus 61 ~~L~~L~L~~N~l~~lp------------~~l~~L~~L~Ls~N~l~~lp---------~~l~~L~~L~Ls~N~l~~l~~- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLP------------ALPPELRTLEVSGNQLTSLP---------VLPPGLLELSIFSNPLTHLPA- 118 (622)
T ss_dssp TTCSEEEECSCCCSCCC------------CCCTTCCEEEECSCCCSCCC---------CCCTTCCEEEECSCCCCCCCC-
T ss_pred CCCcEEEecCCCCCCCC------------CcCCCCCEEEcCCCcCCcCC---------CCCCCCCEEECcCCcCCCCCC-
Confidence 67899999998755322 23488999999999986311 134899999999998876533
Q ss_pred HHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEccc
Q 008809 213 ALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHN 292 (552)
Q Consensus 213 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 292 (552)
. .++|++|++++|+++.. +. ..++|++|+|++|.++... ...++|+.|++++
T Consensus 119 ~------------l~~L~~L~L~~N~l~~l-----p~---~l~~L~~L~Ls~N~l~~l~--------~~~~~L~~L~L~~ 170 (622)
T 3g06_A 119 L------------PSGLCKLWIFGNQLTSL-----PV---LPPGLQELSVSDNQLASLP--------ALPSELCKLWAYN 170 (622)
T ss_dssp C------------CTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCS
T ss_pred C------------CCCcCEEECCCCCCCcC-----CC---CCCCCCEEECcCCcCCCcC--------CccCCCCEEECCC
Confidence 1 16899999999998862 22 2488999999999987521 2357899999999
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEE
Q 008809 293 NMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEV 372 (552)
Q Consensus 293 n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L 372 (552)
|.+.. ++ ..+++|+.|++++|.++. ++. ..++|+.|++++|.++. ++ ...++|+.|
T Consensus 171 N~l~~-----l~---~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L 226 (622)
T 3g06_A 171 NQLTS-----LP---MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS-----LP---ALPSGLKEL 226 (622)
T ss_dssp SCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS-----CC---CCCTTCCEE
T ss_pred CCCCC-----Cc---ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcCCcccc-----cC---CCCCCCCEE
Confidence 99987 44 456899999999999875 222 34799999999999885 22 235889999
Q ss_pred ecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCC
Q 008809 373 YLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGH 452 (552)
Q Consensus 373 ~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~ 452 (552)
++++|.++... ..+++|+.|++++|.|+.... ..++|+.|+|++|.|+. ++..+. .+
T Consensus 227 ~Ls~N~L~~lp---------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~L~~-----lp~~l~-~l 283 (622)
T 3g06_A 227 IVSGNRLTSLP---------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQLTR-----LPESLI-HL 283 (622)
T ss_dssp ECCSSCCSCCC---------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCCS-----CCGGGG-GS
T ss_pred EccCCccCcCC---------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCCCCCc-----CCHHHh-hc
Confidence 99999998622 236899999999999886332 34899999999999883 234455 78
Q ss_pred CCccEEEccCCCCCHHHHHHHHHHHhc---CCCccEEEecCCC
Q 008809 453 DQLKVVDMSSNFIRRAGARQLAQVVIQ---KPGFKQLNIDANI 492 (552)
Q Consensus 453 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~---~~~L~~L~L~~N~ 492 (552)
++|+.|+|++|.++......+...... ...+..++++++.
T Consensus 284 ~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~~ 326 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326 (622)
T ss_dssp CTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC-
T ss_pred cccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCCc
Confidence 999999999999998776666553321 1224455555543
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=5.3e-18 Score=177.48 Aligned_cols=94 Identities=22% Similarity=0.229 Sum_probs=58.4
Q ss_pred CcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcC-CCcCEEEccCCCCCchHHHHHH
Q 008809 367 ADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAK-QHLTKLNLAENELKDDGAIQIS 445 (552)
Q Consensus 367 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~d~g~~~l~ 445 (552)
++|+.|++++|.+++.. .-.++|+.|++++|.++.. ... ++|+.|++++|.++. +.
T Consensus 277 ~~L~~L~ls~N~l~~l~---------~~~~~L~~L~l~~N~l~~i---------~~~~~~L~~L~Ls~N~l~~-----lp 333 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLS---------ELPPNLYYLNASSNEIRSL---------CDLPPSLEELNVSNNKLIE-----LP 333 (454)
T ss_dssp TTCCEEECCSSCCSEES---------CCCTTCCEEECCSSCCSEE---------CCCCTTCCEEECCSSCCSC-----CC
T ss_pred CcCCEEECcCCccCccc---------CcCCcCCEEECcCCcCCcc---------cCCcCcCCEEECCCCcccc-----cc
Confidence 45555555555554410 0014566666666665541 112 478888888887764 11
Q ss_pred HHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCH
Q 008809 446 KALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 446 ~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
. ..++|+.|++++|.++. ++. .+++|+.|++++|+++.
T Consensus 334 ~----~~~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 334 A----LPPRLERLIASFNHLAE-----VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp C----CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred c----cCCcCCEEECCCCcccc-----ccc---hhhhccEEECCCCCCCc
Confidence 1 35788889998888874 222 36789999999998876
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=8.3e-19 Score=191.55 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=95.5
Q ss_pred CCccEeecccCccccccHHHHHHHHhhhhCCCCCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHH
Q 008809 133 ADVTLFDISKGQRAFIEAEEAEEILRPLKEPGNSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAE 212 (552)
Q Consensus 133 ~~l~~ldl~~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~ 212 (552)
+.++++||+++.+..+.. ..+... ++|+.|+|++|.|......++. . .++|++|+|++|.+...+..
T Consensus 52 ~~~~~LdLs~N~i~~l~~-------~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~----~-L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS-------YSFFSF-PELQVLDLSRCEIQTIEDGAYQ----S-LSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp TTCCEEECTTSCCCEECT-------TTTTTC-TTCCEEECTTCCCCEECTTTTT----T-CTTCCEEECTTCCCCEECGG
T ss_pred cCCCEEEeeCCCCCCCCH-------HHHhCC-CCCCEEECCCCcCCCcChhHhc----C-CCCCCEEEccCCcCCCCCHH
Confidence 467999999987664331 234444 8899999999988643222222 2 37899999999998876655
Q ss_pred HHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEccc
Q 008809 213 ALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHN 292 (552)
Q Consensus 213 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 292 (552)
.+..+ .+|++|+|++|+++.... ..++.+++|++|+|++|.++... +...+..+++|++|++++
T Consensus 119 ~f~~L---------~~L~~L~Ls~N~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 119 AFSGL---------SSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp GGTTC---------TTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCS
T ss_pred HhcCC---------CCCCEEECCCCcCCCCCh----hhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccC
Confidence 44433 689999999998876321 23566789999999999886421 112345568999999999
Q ss_pred CCCCh
Q 008809 293 NMTGD 297 (552)
Q Consensus 293 n~l~~ 297 (552)
|.+..
T Consensus 183 N~l~~ 187 (635)
T 4g8a_A 183 NKIQS 187 (635)
T ss_dssp SCCCE
T ss_pred ccccc
Confidence 98865
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=6.9e-18 Score=176.60 Aligned_cols=122 Identities=23% Similarity=0.230 Sum_probs=65.1
Q ss_pred CCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHH
Q 008809 339 THLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISA 418 (552)
Q Consensus 339 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 418 (552)
++|+.|++++|.++.- + .-.++|+.|++++|.+.... ...++|+.|++++|.++....
T Consensus 277 ~~L~~L~ls~N~l~~l-----~---~~~~~L~~L~l~~N~l~~i~---------~~~~~L~~L~Ls~N~l~~lp~----- 334 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGL-----S---ELPPNLYYLNASSNEIRSLC---------DLPPSLEELNVSNNKLIELPA----- 334 (454)
T ss_dssp TTCCEEECCSSCCSEE-----S---CCCTTCCEEECCSSCCSEEC---------CCCTTCCEEECCSSCCSCCCC-----
T ss_pred CcCCEEECcCCccCcc-----c---CcCCcCCEEECcCCcCCccc---------CCcCcCCEEECCCCccccccc-----
Confidence 4566666666665541 1 11257888888888887521 112478888888888875221
Q ss_pred HhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcC-------------CCccE
Q 008809 419 CVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQK-------------PGFKQ 485 (552)
Q Consensus 419 ~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~-------------~~L~~ 485 (552)
..++|+.|++++|.++.- .. .+++|+.|++++|.++... .++..+..+ ++|+.
T Consensus 335 ---~~~~L~~L~L~~N~l~~l-----p~----~l~~L~~L~L~~N~l~~l~--~ip~~l~~L~~n~~~~~i~~~~~~L~~ 400 (454)
T 1jl5_A 335 ---LPPRLERLIASFNHLAEV-----PE----LPQNLKQLHVEYNPLREFP--DIPESVEDLRMNSHLAEVPELPQNLKQ 400 (454)
T ss_dssp ---CCTTCCEEECCSSCCSCC-----CC----CCTTCCEEECCSSCCSSCC--CCCTTCCEEECCC--------------
T ss_pred ---cCCcCCEEECCCCccccc-----cc----hhhhccEEECCCCCCCcCC--CChHHHHhhhhcccccccccccCcCCE
Confidence 137888888888887641 11 3578888888888886510 122223333 77888
Q ss_pred EEecCCCCCHH
Q 008809 486 LNIDANIISEE 496 (552)
Q Consensus 486 L~L~~N~i~~~ 496 (552)
|++++|+++.-
T Consensus 401 L~ls~N~l~~~ 411 (454)
T 1jl5_A 401 LHVETNPLREF 411 (454)
T ss_dssp -----------
T ss_pred EECCCCcCCcc
Confidence 88888888643
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=7.7e-18 Score=164.43 Aligned_cols=179 Identities=14% Similarity=0.101 Sum_probs=102.0
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..+++|++|++++|.++.. .+..+..+++|+.|++++|.+.... ...+..+++|+.|++++|.+....+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~l-- 141 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFKL-- 141 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCCC--
T ss_pred ccCCcCCCEEECCCCccCcc----ChhhhcCCccccEEECCCCCccccC----chhcccCCCCCEEECcCCccceecC--
Confidence 34455555555555555432 1233455566666666666655421 1135556677777777776654221
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcC-EEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLT-KLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i 465 (552)
...+ ..+++|++|++++|.++...+..+..+ ...+.|. .|++++|.++..... .. ...+|+.|++++|.+
T Consensus 142 -~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~-----~~-~~~~L~~L~L~~n~l 212 (276)
T 2z62_A 142 -PEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPG-----AF-KEIRLKELALDTNQL 212 (276)
T ss_dssp -CGGG-GGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCCEECTT-----SS-CSCCEEEEECCSSCC
T ss_pred -chhh-ccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCcccccCcc-----cc-CCCcccEEECCCCce
Confidence 1111 125677777777777776544444333 2223333 788888877653221 11 344788888888888
Q ss_pred CHHHHHHHHHHHhcCCCccEEEecCCCCCHH--HHHHHHHHHhcC
Q 008809 466 RRAGARQLAQVVIQKPGFKQLNIDANIISEE--GIDEVKEIFKNS 508 (552)
Q Consensus 466 ~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~~~ 508 (552)
+... ...+..+++|+.|+|++|+++.. .+..+...++..
T Consensus 213 ~~~~----~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~ 253 (276)
T 2z62_A 213 KSVP----DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 253 (276)
T ss_dssp SCCC----TTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred eecC----HhHhcccccccEEEccCCcccccCCchHHHHHHHHhc
Confidence 7532 22345688889999999888743 255555555554
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1.1e-17 Score=164.46 Aligned_cols=214 Identities=21% Similarity=0.156 Sum_probs=103.0
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
+++++++++++.++.. +..+ .++++.|+|++|.|+.... ..+..+++|++|+|++|.++. ++.
T Consensus 10 ~~l~~l~~~~~~l~~i-----p~~~--~~~l~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~-----~~~- 72 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTAL-----PPDL--PKDTTILHLSENLLYTFSL----ATLMPYTRLTQLNLDRAELTK-----LQV- 72 (290)
T ss_dssp TTCCEEECTTSCCSSC-----CSCC--CTTCCEEECTTSCCSEEEG----GGGTTCTTCCEEECTTSCCCE-----EEC-
T ss_pred CCccEEECCCCCCCcC-----CCCC--CCCCCEEEcCCCcCCccCH----HHhhcCCCCCEEECCCCccCc-----ccC-
Confidence 4666777777666541 1111 2456666666666654321 123445666666666666654 221
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
...+++|+.|++++|+++. ++..+..+++|+.|++++|.++... +..+..+++|+.|++++|.++.....
T Consensus 73 ~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~~~~- 142 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTLPPG- 142 (290)
T ss_dssp CSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCCCTT-
T ss_pred CCCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCccChh-
Confidence 1445566666666666553 3344455556666666666555410 12344555556666655555532111
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
....+++|+.|+|++|.++..... .+..+++|+.|+|++|.|+. +...+. ....|+.|+|++|.+.
T Consensus 143 ----~~~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~L~~N~l~~-----ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 143 ----LLTPTPKLEKLSLANNNLTELPAG----LLNGLENLDTLLLQENSLYT-----IPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ----TTTTCTTCCEEECTTSCCSCCCTT----TTTTCTTCCEEECCSSCCCC-----CCTTTT-TTCCCSEEECCSCCBC
T ss_pred ----hcccccCCCEEECCCCcCCccCHH----HhcCcCCCCEEECCCCcCCc-----cChhhc-ccccCCeEEeCCCCcc
Confidence 111244555555555555432221 12233555555555555542 122222 3445555555555432
Q ss_pred -HHHHHHHHHHHhcCC
Q 008809 467 -RAGARQLAQVVIQKP 481 (552)
Q Consensus 467 -~~g~~~l~~~l~~~~ 481 (552)
+.+...+..++...+
T Consensus 209 C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 209 CNCEILYFRRWLQDNA 224 (290)
T ss_dssp CSGGGHHHHHHHHHTG
T ss_pred CcCccHHHHHHHHhCc
Confidence 223333444444333
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=3.2e-17 Score=161.16 Aligned_cols=190 Identities=21% Similarity=0.138 Sum_probs=124.2
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
..++.|+|++|.++.... ..+..+++|+.|+|++|.|+.... ...+++|++|+|++|.+.. ++..
T Consensus 31 ~~l~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~~-----l~~~ 95 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSL----ATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQS-----LPLL 95 (290)
T ss_dssp TTCCEEECTTSCCSEEEG----GGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCSS-----CCCC
T ss_pred CCCCEEEcCCCcCCccCH----HHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCCc-----Cchh
Confidence 366777777776664322 234445777777777777754321 1456778888888887765 5555
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..+++|+.|++++|+++.. .+..+..+++|+.|+|++|.++.. .+..+..+++|+.|++++|.++....
T Consensus 96 ~~~l~~L~~L~l~~N~l~~l----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~l~~-- 165 (290)
T 1p9a_G 96 GQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGNELKTL----PPGLLTPTPKLEKLSLANNNLTELPA-- 165 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCC----CSSTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCSCCCT--
T ss_pred hccCCCCCEEECCCCcCccc----CHHHHcCCCCCCEEECCCCCCCcc----ChhhcccccCCCEEECCCCcCCccCH--
Confidence 66777888888888887652 124566778888888888887752 12345677888888888888875322
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCC-chHHHHHHHHHh
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELK-DDGAIQISKALE 449 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-d~g~~~l~~~L~ 449 (552)
.....+++|+.|+|++|.++... ..+..+++|+.|+|++|.+. +-++..+...+.
T Consensus 166 ---~~~~~l~~L~~L~L~~N~l~~ip-----~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~ 221 (290)
T 1p9a_G 166 ---GLLNGLENLDTLLLQENSLYTIP-----KGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221 (290)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCC-----TTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred ---HHhcCcCCCCEEECCCCcCCccC-----hhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence 22233678888888888887422 22334478999999988765 334445555555
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=2e-17 Score=161.19 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHH
Q 008809 282 TEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSK 361 (552)
Q Consensus 282 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~ 361 (552)
+++|++|++++|.+.. +. .+..+++|++|++++|.++.. .+..+..+++|+.|++++|.++.. .+.
T Consensus 62 l~~L~~L~l~~n~l~~-----~~-~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 127 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-----IS-ALKELTNLTYLILTGNQLQSL----PNGVFDKLTNLKELVLVENQLQSL----PDG 127 (272)
T ss_dssp CTTCCEEECTTSCCCC-----CG-GGTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTT
T ss_pred CCCCcEEECCCCCCCC-----ch-hhcCCCCCCEEECCCCccCcc----ChhHhcCCcCCCEEECCCCcCCcc----CHH
Confidence 3445555555544443 11 234445555555555554431 112234455555555555555431 112
Q ss_pred HHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHH
Q 008809 362 ALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGA 441 (552)
Q Consensus 362 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~ 441 (552)
.+..+++|+.|++++|.++......+ ..+++|+.|++++|.++..... .+..+++|+.|+|++|.++....
T Consensus 128 ~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHNQLQSLPKGVF-----DKLTNLTELDLSYNQLQSLPEG----VFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCT
T ss_pred HhccCCCCCEEECCCCccCccCHHHh-----ccCccCCEEECCCCCcCccCHH----HhcCCccCCEEECCCCcCCccCH
Confidence 24445555555555555543221111 1245566666666655543321 12333566666666665553221
Q ss_pred HHHHHHHhhCCCCccEEEccCCCCC
Q 008809 442 IQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 442 ~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
..+. .+++|+.|++++|.+.
T Consensus 199 ----~~~~-~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 199 ----GVFD-RLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ----TTTT-TCTTCCEEECCSSCBC
T ss_pred ----HHHh-CCcCCCEEEccCCCcc
Confidence 1122 4556666666666543
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=6.5e-18 Score=164.95 Aligned_cols=140 Identities=20% Similarity=0.206 Sum_probs=59.3
Q ss_pred hcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHH
Q 008809 308 KHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAI 387 (552)
Q Consensus 308 ~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l 387 (552)
..+++|+.|++++|.+... ....+..+++|+.|++++|.++... ++..+..+++|+.|++++|.++......+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp TTCTTCCEEECTTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred cCCccccEEECCCCCcccc----CchhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 3444444444444444331 0112334445555555555544310 12344445555555555555544322111
Q ss_pred HHHHhcCCCCcc-EEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008809 388 TNALKGSAPLLE-VLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 388 ~~~l~~~~~~L~-~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
.. +. .+..|. .|++++|.++...... ....+|+.|+|++|.++.... ..+. .+++|+.|++++|.++
T Consensus 170 ~~-l~-~L~~l~l~L~ls~n~l~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~----~~~~-~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 170 RV-LH-QMPLLNLSLDLSLNPMNFIQPGA-----FKEIRLKELALDTNQLKSVPD----GIFD-RLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HH-HH-TCTTCCEEEECCSSCCCEECTTS-----SCSCCEEEEECCSSCCSCCCT----TTTT-TCCSCCEEECCSSCBC
T ss_pred hh-hh-hccccceeeecCCCcccccCccc-----cCCCcccEEECCCCceeecCH----hHhc-ccccccEEEccCCccc
Confidence 11 00 122222 5555555555432211 111355666666665543211 1112 4556666666666554
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=4.8e-17 Score=158.25 Aligned_cols=174 Identities=18% Similarity=0.176 Sum_probs=94.8
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..+++|++|++++|.++.. ....+..+++|+.|++++|.++... ...+..+++|+.|++++|.+.......
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~ 128 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTL----PAGIFKELKNLETLWVTDNKLQALP----IGVFDQLVNLAELRLDRNQLKSLPPRV 128 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCC----CTTTTSSCTTCCEEECCSSCCCCCC----TTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred hcCCCCCCEEECCCCccCee----ChhhhcCCCCCCEEECCCCcCCcCC----HhHcccccCCCEEECCCCccCeeCHHH
Confidence 33444555555555544421 0112234555666666665554311 123455566666666666655432211
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
+ ..+++|++|++++|.++...... +..+++|+.|+|++|.++..... .+. .+++|+.|+|++|.|+
T Consensus 129 ~-----~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~----~~~-~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 129 F-----DSLTKLTYLSLGYNELQSLPKGV----FDKLTSLKELRLYNNQLKRVPEG----AFD-KLTELKTLKLDNNQLK 194 (270)
T ss_dssp T-----TTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTT----TTT-TCTTCCEEECCSSCCS
T ss_pred h-----CcCcCCCEEECCCCcCCccCHhH----ccCCcccceeEecCCcCcEeChh----Hhc-cCCCcCEEECCCCcCC
Confidence 1 22567777777777766543322 34447777777777776653221 223 5677888888888776
Q ss_pred HHHHHHHHHHHhcCCCccEEEecCCCCCHH--HHHHHHHHHh
Q 008809 467 RAGARQLAQVVIQKPGFKQLNIDANIISEE--GIDEVKEIFK 506 (552)
Q Consensus 467 ~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~ 506 (552)
... ..++..+++|+.|+|++|++... ++..+.+.++
T Consensus 195 ~~~----~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~ 232 (270)
T 2o6q_A 195 RVP----EGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232 (270)
T ss_dssp CCC----TTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHH
T ss_pred cCC----HHHhccccCCCEEEecCCCeeCCCccHHHHHHHHH
Confidence 532 12345578888888888886532 3444444444
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=2.1e-17 Score=180.42 Aligned_cols=136 Identities=20% Similarity=0.173 Sum_probs=104.4
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHH
Q 008809 165 NSYTKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGV 244 (552)
Q Consensus 165 ~~l~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 244 (552)
.+++.|+|++|.|+......+.. .++|++|+|++|.+...++.++..+ ++|++|+|++|+|+....
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~-----l~~L~~L~Ls~N~i~~i~~~~f~~L---------~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS-----FPELQVLDLSRCEIQTIEDGAYQSL---------SHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECTTCCCCEECTTTTTTC---------TTCCEEECTTCCCCEECG
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC-----CCCCCEEECCCCcCCCcChhHhcCC---------CCCCEEEccCCcCCCCCH
Confidence 57999999999997533322222 2799999999999987665555444 799999999999986422
Q ss_pred HHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCC
Q 008809 245 RAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIG 324 (552)
Q Consensus 245 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~ 324 (552)
..+..+++|++|+|++|.++.... ..+..+++|++|+|++|.+.... ++..+..+++|++|++++|++.
T Consensus 118 ----~~f~~L~~L~~L~Ls~N~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 118 ----GAFSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp ----GGGTTCTTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCC
T ss_pred ----HHhcCCCCCCEEECCCCcCCCCCh----hhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccCcccc
Confidence 345667999999999999875321 13567899999999999886411 3456788999999999999986
Q ss_pred h
Q 008809 325 S 325 (552)
Q Consensus 325 ~ 325 (552)
.
T Consensus 187 ~ 187 (635)
T 4g8a_A 187 S 187 (635)
T ss_dssp E
T ss_pred c
Confidence 5
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=5.7e-17 Score=157.92 Aligned_cols=195 Identities=14% Similarity=0.128 Sum_probs=134.2
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHH-H
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAIS-D 305 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~ 305 (552)
.+|+.|++++|.+... ..+..+++|+.|++++|.+++. ..+..+++|++|+|++|.+.. ++ .
T Consensus 41 ~~L~~L~l~~~~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~n~l~~-----~~~~ 103 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV------QGIQYLPNVRYLALGGNKLHDI------SALKELTNLTYLILTGNQLQS-----LPNG 103 (272)
T ss_dssp TTCCEEECTTSCCCCC------TTGGGCTTCCEEECTTSCCCCC------GGGTTCTTCCEEECTTSCCCC-----CCTT
T ss_pred cceeeeeeCCCCcccc------cccccCCCCcEEECCCCCCCCc------hhhcCCCCCCEEECCCCccCc-----cChh
Confidence 5777777777766643 2245567778888887777652 145666788888888887765 22 2
Q ss_pred HhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHH
Q 008809 306 VVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTV 385 (552)
Q Consensus 306 ~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~ 385 (552)
.+..+++|++|++++|+++.. .+..+..+++|+.|++++|.++... +..+..+++|+.|++++|.++.....
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSLP----KGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred HhcCCcCCCEEECCCCcCCcc----CHHHhccCCCCCEEECCCCccCccC----HHHhccCccCCEEECCCCCcCccCHH
Confidence 356678888888888887652 2234567788888888888877521 23356788888999988888753322
Q ss_pred HHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCC
Q 008809 386 AITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465 (552)
Q Consensus 386 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i 465 (552)
.+ ..+++|++|++++|.++...+. .+..+++|+.|+|++|.+.. .++.|+.|++++|.+
T Consensus 176 ~~-----~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~~~~------------~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 176 VF-----DKLTQLKDLRLYQNQLKSVPDG----VFDRLTSLQYIWLHDNPWDC------------TCPGIRYLSEWINKH 234 (272)
T ss_dssp TT-----TTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCBCC------------CTTTTHHHHHHHHHT
T ss_pred Hh-----cCCccCCEEECCCCcCCccCHH----HHhCCcCCCEEEccCCCccc------------cCcHHHHHHHHHHhC
Confidence 11 2368899999999988865442 24556899999999998763 567777777777766
Q ss_pred CH
Q 008809 466 RR 467 (552)
Q Consensus 466 ~~ 467 (552)
++
T Consensus 235 ~g 236 (272)
T 3rfs_A 235 SG 236 (272)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=1.3e-15 Score=149.78 Aligned_cols=169 Identities=21% Similarity=0.215 Sum_probs=82.4
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHH
Q 008809 255 SSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEA 334 (552)
Q Consensus 255 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~ 334 (552)
.+|+.|++++|.++... .+..+++|++|++++|.+.. ++. +..+++|+.|++++|.++.. ..
T Consensus 46 ~~L~~L~l~~~~i~~~~------~~~~l~~L~~L~L~~n~l~~-----~~~-l~~l~~L~~L~l~~n~l~~~------~~ 107 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTD-----IKP-LANLKNLGWLFLDENKVKDL------SS 107 (291)
T ss_dssp HTCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCC-----CGG-GTTCTTCCEEECCSSCCCCG------GG
T ss_pred CcccEEEccCCCcccCh------hHhcCCCCCEEEccCCccCC-----Ccc-cccCCCCCEEECCCCcCCCC------hh
Confidence 55666666666654321 13334555666666555554 222 44555555555555555431 12
Q ss_pred hhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHH
Q 008809 335 LESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAP 414 (552)
Q Consensus 335 l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 414 (552)
+..+++|+.|++++|.++. ...+..++ +|+.|++++|.++..
T Consensus 108 l~~l~~L~~L~L~~n~i~~------~~~l~~l~-----------------------------~L~~L~l~~n~l~~~--- 149 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD------INGLVHLP-----------------------------QLESLYLGNNKITDI--- 149 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC------CGGGGGCT-----------------------------TCCEEECCSSCCCCC---
T ss_pred hccCCCCCEEECCCCcCCC------ChhhcCCC-----------------------------CCCEEEccCCcCCcc---
Confidence 4444555555555555443 12334444 455555555554442
Q ss_pred HHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008809 415 VISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 415 ~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
..+..+++|+.|+|++|.+++... +. .+++|+.|++++|.|++. . .+..+++|+.|++++|+++
T Consensus 150 ---~~l~~l~~L~~L~L~~N~l~~~~~------l~-~l~~L~~L~L~~N~i~~l-----~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 150 ---TVLSRLTKLDTLSLEDNQISDIVP------LA-GLTKLQNLYLSKNHISDL-----R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCCCGG------GT-TCTTCCEEECCSSCCCBC-----G-GGTTCTTCSEEEEEEEEEE
T ss_pred ---hhhccCCCCCEEEccCCccccchh------hc-CCCccCEEECCCCcCCCC-----h-hhccCCCCCEEECcCCccc
Confidence 123334555555555555544221 22 455555555555555542 1 2444555555555555554
Q ss_pred H
Q 008809 495 E 495 (552)
Q Consensus 495 ~ 495 (552)
.
T Consensus 214 ~ 214 (291)
T 1h6t_A 214 N 214 (291)
T ss_dssp C
T ss_pred C
Confidence 3
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=3.6e-16 Score=144.47 Aligned_cols=150 Identities=14% Similarity=0.185 Sum_probs=71.4
Q ss_pred CCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHH
Q 008809 283 EKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKA 362 (552)
Q Consensus 283 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~ 362 (552)
++|++|++++|.+.+ ++ .+..+++|+.|++++|.+... ..+..+++|+.|++++|.++... +..
T Consensus 44 ~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~----~~~ 107 (197)
T 4ezg_A 44 NSLTYITLANINVTD-----LT-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDK----IPN 107 (197)
T ss_dssp HTCCEEEEESSCCSC-----CT-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGG----SCC
T ss_pred CCccEEeccCCCccC-----hH-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCccc----Chh
Confidence 356666666665554 33 345555566666665554431 23444555555555555554321 223
Q ss_pred HccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCC-CCchHH
Q 008809 363 LSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENE-LKDDGA 441 (552)
Q Consensus 363 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~d~g~ 441 (552)
+..++ +|++|++++|.++...+..+ ..+++|++|+|++|. +++.
T Consensus 108 l~~l~-----------------------------~L~~L~Ls~n~i~~~~~~~l----~~l~~L~~L~L~~n~~i~~~-- 152 (197)
T 4ezg_A 108 LSGLT-----------------------------SLTLLDISHSAHDDSILTKI----NTLPKVNSIDLSYNGAITDI-- 152 (197)
T ss_dssp CTTCT-----------------------------TCCEEECCSSBCBGGGHHHH----TTCSSCCEEECCSCTBCCCC--
T ss_pred hcCCC-----------------------------CCCEEEecCCccCcHhHHHH----hhCCCCCEEEccCCCCcccc--
Confidence 33444 45555555555544333222 223555555555554 4432
Q ss_pred HHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008809 442 IQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 442 ~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
..+. .+++|+.|++++|.|++. . .+..+++|+.|++++|+|+
T Consensus 153 ----~~l~-~l~~L~~L~l~~n~i~~~-----~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 153 ----MPLK-TLPELKSLNIQFDGVHDY-----R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ----GGGG-GCSSCCEEECTTBCCCCC-----T-TGGGCSSCCEEEECBC---
T ss_pred ----Hhhc-CCCCCCEEECCCCCCcCh-----H-HhccCCCCCEEEeeCcccC
Confidence 1233 455555555555555442 1 3444555666666666554
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=7.5e-16 Score=151.48 Aligned_cols=169 Identities=18% Similarity=0.210 Sum_probs=134.5
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
.+|++|++++|.+... ..+..+++|+.|++++|.+++... +..+++|++|++++|.+.. ++.
T Consensus 46 ~~L~~L~l~~~~i~~~------~~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-----~~~- 107 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-----LSS- 107 (291)
T ss_dssp HTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-----GGG-
T ss_pred CcccEEEccCCCcccC------hhHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-----Chh-
Confidence 5899999999998864 236677999999999999986432 6778999999999999987 333
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..+++|+.|++++|+++.. ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+++...
T Consensus 108 l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred hccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchh--
Confidence 78899999999999999862 4678899999999999999872 467788888888888888876432
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCc
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKD 438 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d 438 (552)
+ ..+++|+.|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 174 ----l-~~l~~L~~L~L~~N~i~~l~------~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 ----L-AGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ----G-TTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEEEEEEEEEC
T ss_pred ----h-cCCCccCEEECCCCcCCCCh------hhccCCCCCEEECcCCcccC
Confidence 2 23678888888888877642 14556778888888777654
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.1e-16 Score=155.77 Aligned_cols=180 Identities=19% Similarity=0.237 Sum_probs=97.9
Q ss_pred CccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH-HhhcCCCccEEEeeCCCCChHHHHHHHHH
Q 008809 256 SLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD-VVKHSPLLEDFRCSSTRIGSEGGTALSEA 334 (552)
Q Consensus 256 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~ls~n~l~~~~~~~l~~~ 334 (552)
+|+.|+|++|.|+.... ..+..+++|++|+|++|.+.. ++. .+..+++|++|++++|++... .+..
T Consensus 38 ~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~l~~~----~~~~ 104 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPS----KAFHRLTKLRLLYLNDNKLQT-----LPAGIFKELKNLETLWVTDNKLQAL----PIGV 104 (270)
T ss_dssp TCSEEECCSSCCSCCCT----TSSSSCTTCCEEECCSSCCSC-----CCTTTTSSCTTCCEEECCSSCCCCC----CTTT
T ss_pred CCCEEECcCCCCCeeCH----HHhcCCCCCCEEECCCCccCe-----eChhhhcCCCCCCEEECCCCcCCcC----CHhH
Confidence 34555555554432211 123344555555555555543 222 234455666666666665532 1123
Q ss_pred hhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHH
Q 008809 335 LESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAP 414 (552)
Q Consensus 335 l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 414 (552)
+..+++|+.|++++|.++... +..+..+++|+.|++++|.+.......+ ..+++|+.|++++|.++.....
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLP----PRVFDSLTKLTYLSLGYNELQSLPKGVF-----DKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccCCCEEECCCCccCeeC----HHHhCcCcCCCEEECCCCcCCccCHhHc-----cCCcccceeEecCCcCcEeChh
Confidence 445666667777666665421 2334566777777777776664322111 2356777777777777654432
Q ss_pred HHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008809 415 VISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 415 ~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
. +..+++|+.|+|++|.++..... .+. .+++|+.|+|++|.+.
T Consensus 176 ~----~~~l~~L~~L~L~~N~l~~~~~~----~~~-~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 176 A----FDKLTELKTLKLDNNQLKRVPEG----AFD-SLEKLKMLQLQENPWD 218 (270)
T ss_dssp T----TTTCTTCCEEECCSSCCSCCCTT----TTT-TCTTCCEEECCSSCBC
T ss_pred H----hccCCCcCEEECCCCcCCcCCHH----Hhc-cccCCCEEEecCCCee
Confidence 2 33447788888888877643221 223 5677888888888653
No 100
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.57 E-value=3e-15 Score=150.91 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=112.5
Q ss_pred HHhhcCCCCCEEecCCCC-CChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCC--C-C
Q 008809 333 EALESCTHLKKLDLRDNM-FGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGN--D-I 408 (552)
Q Consensus 333 ~~l~~~~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n--~-l 408 (552)
..+..+|+|+.|+|++|. +. ++. + .+++|++|++..+.+...++..++. ..+++|++|+|+.+ . .
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~---~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS------IGK-K-PRPNLKSLEIISGGLPDSVVEDILG---SDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH---SBCTTCCEEEEECBCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCce------ecc-c-cCCCCcEEEEecCCCChHHHHHHHH---ccCCCCcEEEEeccccccc
Confidence 444556666666666552 11 111 2 2567777777777777666555543 23577777777531 1 1
Q ss_pred CcchHHHHHHHhh--cCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEE
Q 008809 409 TVEAAPVISACVA--AKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQL 486 (552)
Q Consensus 409 ~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L 486 (552)
.+.+...++..+. .+++|+.|+|++|.+++.++..++++ . .+++|++|+|++|.|++.|+..++..+..+++|+.|
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~-~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-D-ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-S-SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-c-cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence 2212223333333 36899999999999998887777754 2 478999999999999999999998888889999999
Q ss_pred EecCCCCCHHHHHHHHHHH
Q 008809 487 NIDANIISEEGIDEVKEIF 505 (552)
Q Consensus 487 ~L~~N~i~~~g~~~l~~~l 505 (552)
+|++|.|++.|+..|.+++
T Consensus 313 ~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 313 NMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp ECCSBBCCHHHHHHHHHHC
T ss_pred ECCCCcCCHHHHHHHHHHc
Confidence 9999999999999999977
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=3.4e-16 Score=150.47 Aligned_cols=173 Identities=16% Similarity=0.163 Sum_probs=94.8
Q ss_pred CccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHH
Q 008809 312 LLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNAL 391 (552)
Q Consensus 312 ~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 391 (552)
.++.|++++|.+... .+..+..+++|+.|+|++|.++.. .+..+..+++|+.|++++|.++......+
T Consensus 36 ~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---- 103 (251)
T 3m19_A 36 DTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTL----SAGVFDDLTELGTLGLANNQLASLPLGVF---- 103 (251)
T ss_dssp TCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCCTTTT----
T ss_pred CCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCcc----CHhHhccCCcCCEEECCCCcccccChhHh----
Confidence 455555555554432 122344555566666666655542 12234555666666666666554221111
Q ss_pred hcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHH
Q 008809 392 KGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGAR 471 (552)
Q Consensus 392 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~ 471 (552)
..+++|++|+|++|.++..... .+..+++|+.|+|++|.|+.... ..+. .+++|+.|+|++|.|+...
T Consensus 104 -~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~----~~~~-~l~~L~~L~L~~N~l~~~~-- 171 (251)
T 3m19_A 104 -DHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPA----GAFD-KLTNLQTLSLSTNQLQSVP-- 171 (251)
T ss_dssp -TTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCT----TTTT-TCTTCCEEECCSSCCSCCC--
T ss_pred -cccCCCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCcCCccCH----HHcC-cCcCCCEEECCCCcCCccC--
Confidence 2256666777776666643321 13344677777777777664222 1233 5677777777777776432
Q ss_pred HHHHHHhcCCCccEEEecCCCCCHH--HHHHHHHHHhcCcc
Q 008809 472 QLAQVVIQKPGFKQLNIDANIISEE--GIDEVKEIFKNSPD 510 (552)
Q Consensus 472 ~l~~~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~~~~~ 510 (552)
...+..+++|+.|+|++|+++.. .+..+...++.+..
T Consensus 172 --~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~ 210 (251)
T 3m19_A 172 --HGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSN 210 (251)
T ss_dssp --TTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGG
T ss_pred --HHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhccc
Confidence 22345577788888888877653 45556666655533
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=3.1e-15 Score=138.13 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=114.7
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHH
Q 008809 255 SSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEA 334 (552)
Q Consensus 255 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~ 334 (552)
++|+.|++++|.|+... .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.++.. .+..
T Consensus 44 ~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~l~~n~~~~-----~~-~l~~l~~L~~L~l~~n~l~~~----~~~~ 107 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT------GIEYAHNIKDLTINNIHATN-----YN-PISGLSNLERLRIMGKDVTSD----KIPN 107 (197)
T ss_dssp HTCCEEEEESSCCSCCT------TGGGCTTCSEEEEESCCCSC-----CG-GGTTCTTCCEEEEECTTCBGG----GSCC
T ss_pred CCccEEeccCCCccChH------HHhcCCCCCEEEccCCCCCc-----ch-hhhcCCCCCEEEeECCccCcc----cChh
Confidence 78999999999997422 35667899999999998875 32 578899999999999999864 3456
Q ss_pred hhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCC-CCchHHHHHHHHHhcCCCCccEEEccCCCCCcchH
Q 008809 335 LESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLN-LEDDGTVAITNALKGSAPLLEVLELAGNDITVEAA 413 (552)
Q Consensus 335 l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 413 (552)
+..+++|+.|++++|.++... +..+..+++|+.|++++|. +++.. .+ ..+++|+.|++++|.+++..
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~L~~n~~i~~~~------~l-~~l~~L~~L~l~~n~i~~~~- 175 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSI----LTKINTLPKVNSIDLSYNGAITDIM------PL-KTLPELKSLNIQFDGVHDYR- 175 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGG----HHHHTTCSSCCEEECCSCTBCCCCG------GG-GGCSSCCEEECTTBCCCCCT-
T ss_pred hcCCCCCCEEEecCCccCcHh----HHHHhhCCCCCEEEccCCCCccccH------hh-cCCCCCCEEECCCCCCcChH-
Confidence 778999999999999998743 5677888999999999997 77632 12 23677888888888877632
Q ss_pred HHHHHHhhcCCCcCEEEccCCCCCc
Q 008809 414 PVISACVAAKQHLTKLNLAENELKD 438 (552)
Q Consensus 414 ~~l~~~l~~~~~L~~L~Ls~n~l~d 438 (552)
.+..+++|+.|++++|.|++
T Consensus 176 -----~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 -----GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -----TGGGCSSCCEEEECBC----
T ss_pred -----HhccCCCCCEEEeeCcccCC
Confidence 24555777888887777653
No 103
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.54 E-value=8.3e-15 Score=147.70 Aligned_cols=226 Identities=15% Similarity=0.185 Sum_probs=145.1
Q ss_pred CCccEEEcCCCCCC-H---HHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHH
Q 008809 227 SVLKSLNLSDNALG-E---KGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQA 302 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~-~---~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 302 (552)
..++.|.+...... . ..+..+...+..+++|+.|.+....... ..++.....+
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~------------------~~is~~~~~~----- 163 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEE------------------QEISWIEQVD----- 163 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTT------------------CCGGGCBCCB-----
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhh------------------cccccccccC-----
Confidence 46778888765543 1 2334444444455778888776532210 0011111111
Q ss_pred HHHHhhcCCCccEEEeeCCC-CChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCC--C-C
Q 008809 303 ISDVVKHSPLLEDFRCSSTR-IGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSY--L-N 378 (552)
Q Consensus 303 l~~~l~~~~~L~~L~ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~--n-~ 378 (552)
+...+..+|+|+.|++++|. +. ++. + .+++|++|+|..|.++..++..+. ...+|+|+.|+|+. + .
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~ 233 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS------IGK-K-PRPNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDY 233 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB------CCS-C-BCTTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce------ecc-c-cCCCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEecccccc
Confidence 34455566777777776652 21 111 2 256778888877777766544332 23577788887753 1 1
Q ss_pred CCchHHHHHHHHHh-cCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccE
Q 008809 379 LEDDGTVAITNALK-GSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKV 457 (552)
Q Consensus 379 l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~ 457 (552)
.++.++..+...+. ..+++|++|+|.+|.+++.++..++.. ..+++|++|+|+.|.|++.|+..++.++. .+++|+.
T Consensus 234 ~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~-~l~~L~~ 311 (362)
T 2ra8_A 234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVD-KIKHLKF 311 (362)
T ss_dssp TCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHH-HHTTCSE
T ss_pred ccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcc-cCCcceE
Confidence 22222222322222 236899999999999987776666653 34589999999999999999999998887 8899999
Q ss_pred EEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCC
Q 008809 458 VDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANI 492 (552)
Q Consensus 458 L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~ 492 (552)
|+|++|.|++.++.++++++ ...+++++++
T Consensus 312 L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 312 INMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp EECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred EECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence 99999999999999998865 4668898887
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=5.3e-15 Score=159.53 Aligned_cols=169 Identities=24% Similarity=0.284 Sum_probs=122.2
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHH
Q 008809 255 SSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEA 334 (552)
Q Consensus 255 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~ 334 (552)
.+|+.|++++|.|.... .+..+++|+.|+|++|.+.. ++. +..+++|+.|+|++|.+.. + ..
T Consensus 43 ~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~-----~~~-l~~l~~L~~L~Ls~N~l~~-----l-~~ 104 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTD-----IKP-LTNLKNLGWLFLDENKIKD-----L-SS 104 (605)
T ss_dssp TTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCC-----CGG-GGGCTTCCEEECCSSCCCC-----C-TT
T ss_pred CCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCC-----Chh-hccCCCCCEEECcCCCCCC-----C-hh
Confidence 78888999988886532 35567888888888888876 333 6778888888888888875 2 25
Q ss_pred hhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHH
Q 008809 335 LESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAP 414 (552)
Q Consensus 335 l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 414 (552)
+..+++|+.|+|++|.+.. ...+..+++|+.|+|++|.+... ..+ ..+++|+.|+|++|.++...+
T Consensus 105 l~~l~~L~~L~Ls~N~l~~------l~~l~~l~~L~~L~Ls~N~l~~l------~~l-~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISD------INGLVHLPQLESLYLGNNKITDI------TVL-SRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp STTCTTCCEEECTTSCCCC------CGGGGGCTTCSEEECCSSCCCCC------GGG-GSCTTCSEEECCSSCCCCCGG-
T ss_pred hccCCCCCEEEecCCCCCC------CccccCCCccCEEECCCCccCCc------hhh-cccCCCCEEECcCCcCCCchh-
Confidence 6778888888888888876 23467778888888888887763 122 236778888888888776543
Q ss_pred HHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCH
Q 008809 415 VISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRR 467 (552)
Q Consensus 415 ~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~ 467 (552)
+..+++|+.|+|++|.|++. ..+. .+++|+.|+|++|.+..
T Consensus 171 -----l~~l~~L~~L~Ls~N~i~~l------~~l~-~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 -----LAGLTKLQNLYLSKNHISDL------RALA-GLKNLDVLELFSQECLN 211 (605)
T ss_dssp -----GTTCTTCCEEECCSSCCCBC------GGGT-TCTTCSEEECCSEEEEC
T ss_pred -----hccCCCCCEEECcCCCCCCC------hHHc-cCCCCCEEEccCCcCcC
Confidence 45557888888888877762 2344 67788888888877654
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=2.9e-15 Score=159.89 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=103.1
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
.+|+.|+|++|.++. ++..+ .++|+.|+|++|.|+... ..+++|++|+|++|.++. ++.
T Consensus 59 ~~L~~L~Ls~n~L~~-----lp~~l--~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~-----ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-----LPDNL--PPQITVLEITQNALISLP--------ELPASLEYLDACDNRLST-----LPE- 117 (571)
T ss_dssp TTCSEEECCSSCCSC-----CCSCC--CTTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSC-----CCC-
T ss_pred CCccEEEeCCCCCCc-----cCHhH--cCCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCC-----cch-
Confidence 367777777777664 22211 256777777777775311 234677777777776665 333
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+.. +|+.|++++|.|+. ++. .+++|+.|++++|.++. ++. .+++|+.|++++|.++....
T Consensus 118 l~~--~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp~-- 177 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLPE-- 177 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC--
T ss_pred hhc--CCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcch--
Confidence 222 67777777776654 222 45667777777776654 222 34566666666666655211
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHH-HhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISA-CVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i 465 (552)
+ .++|+.|+|++|.|+.... +.. +....+.|+.|+|++|.|+. ++..+. .+++|+.|+|++|.+
T Consensus 178 ----l---~~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~-~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 178 ----L---PESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITH-----IPENIL-SLDPTCTIILEDNPL 242 (571)
T ss_dssp ----C---CTTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCC-----CCGGGG-GSCTTEEEECCSSSC
T ss_pred ----h---hCCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCccee-----cCHHHh-cCCCCCEEEeeCCcC
Confidence 1 1466666666666653221 111 01111223666666666652 233333 456666666666666
Q ss_pred CHHHHHHHH
Q 008809 466 RRAGARQLA 474 (552)
Q Consensus 466 ~~~g~~~l~ 474 (552)
+......+.
T Consensus 243 ~~~~p~~l~ 251 (571)
T 3cvr_A 243 SSRIRESLS 251 (571)
T ss_dssp CHHHHHHHH
T ss_pred CCcCHHHHH
Confidence 655444443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=4.8e-15 Score=159.84 Aligned_cols=170 Identities=18% Similarity=0.205 Sum_probs=140.0
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
.+|+.|++++|.+... ..+..+++|+.|+|++|.|+.... +..+++|+.|+|++|.+.. ++ .
T Consensus 43 ~~L~~L~l~~n~i~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~-----l~-~ 104 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKD-----LS-S 104 (605)
T ss_dssp TTCCCCBCTTCCCCCC------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCC-----CT-T
T ss_pred CCCCEEECcCCCCCCC------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCC-----Ch-h
Confidence 6899999999988864 236677999999999999876542 5677899999999999986 33 4
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.++.. ..+..+++|+.|+|++|.+.+...
T Consensus 105 l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp STTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred hccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchh--
Confidence 78899999999999998862 4578899999999999999872 568889999999999999987543
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCch
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDD 439 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~ 439 (552)
+ ..+++|+.|+|++|.|+... .+..+++|+.|+|++|.+...
T Consensus 171 ----l-~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 ----L-AGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ----G-TTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCSEEEECC
T ss_pred ----h-ccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccCCcCcCC
Confidence 2 34789999999999998742 366679999999999987653
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=3.5e-15 Score=144.38 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=89.2
Q ss_pred hcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHH
Q 008809 308 KHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAI 387 (552)
Q Consensus 308 ~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l 387 (552)
..+++|+.|++++|.++. ++ .+..+++|+.|++++|.++.. +. +..+++|+.|++++|.++....
T Consensus 38 ~~l~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~L~~N~i~~~-----~~-l~~l~~L~~L~L~~N~l~~l~~--- 102 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQS-----LA-GMQFFTNLKELHLSHNQISDL-----SP-LKDLTKLEELSVNRNRLKNLNG--- 102 (263)
T ss_dssp HHHTTCSEEECTTSCCCC-----CT-TGGGCTTCCEEECCSSCCCCC-----GG-GTTCSSCCEEECCSSCCSCCTT---
T ss_pred hhcCcCcEEECcCCCccc-----ch-HHhhCCCCCEEECCCCccCCC-----hh-hccCCCCCEEECCCCccCCcCc---
Confidence 344556666666666554 22 455566666666666666552 22 5566666666666666654211
Q ss_pred HHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCH
Q 008809 388 TNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRR 467 (552)
Q Consensus 388 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~ 467 (552)
+ . .++|++|++++|.++... .+..+++|+.|+|++|.|++. ..+. .+++|+.|++++|.|++
T Consensus 103 ---~-~-~~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~Ls~N~i~~~------~~l~-~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 103 ---I-P-SACLSRLFLDNNELRDTD------SLIHLKNLEILSIRNNKLKSI------VMLG-FLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ---C-C-CSSCCEEECCSSCCSBSG------GGTTCTTCCEEECTTSCCCBC------GGGG-GCTTCCEEECTTSCCCB
T ss_pred ---c-c-cCcccEEEccCCccCCCh------hhcCcccccEEECCCCcCCCC------hHHc-cCCCCCEEECCCCcCcc
Confidence 1 1 156777777777766531 244557777777777777653 1344 66777777777777765
Q ss_pred HHHHHHHHHHhcCCCccEEEecCCCCCHH
Q 008809 468 AGARQLAQVVIQKPGFKQLNIDANIISEE 496 (552)
Q Consensus 468 ~g~~~l~~~l~~~~~L~~L~L~~N~i~~~ 496 (552)
. ..+..+++|+.|++++|+++..
T Consensus 165 ~------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C------TTSTTCCCCCEEEEEEEEEECC
T ss_pred h------HHhccCCCCCEEeCCCCcccCC
Confidence 3 3455577777777777776544
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=9.2e-15 Score=156.06 Aligned_cols=194 Identities=22% Similarity=0.219 Sum_probs=113.3
Q ss_pred cCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHH
Q 008809 194 SQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAAR 273 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 273 (552)
.+|+.|+|++|.++..+...+ ++|++|+|++|.|+.. + ..+++|+.|+|++|.|+...
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~------------~~L~~L~Ls~N~l~~i-----p---~~l~~L~~L~Ls~N~l~~ip-- 116 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP------------PQITVLEITQNALISL-----P---ELPASLEYLDACDNRLSTLP-- 116 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC------------TTCSEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCCC--
T ss_pred CCccEEEeCCCCCCccCHhHc------------CCCCEEECcCCCCccc-----c---cccCCCCEEEccCCCCCCcc--
Confidence 467777777766654322111 4677777777776632 1 23467777777777775421
Q ss_pred HHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCCh
Q 008809 274 AVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGV 353 (552)
Q Consensus 274 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 353 (552)
. +. .+|++|+|++|.++. ++. .+++|+.|++++|.|+. ++. .+++|+.|+|++|.++.
T Consensus 117 ---~-l~--~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 117 ---E-LP--ASLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp ---C-CC--TTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSC
T ss_pred ---h-hh--cCCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCC
Confidence 1 21 277777777777765 333 46677777777777764 222 35677777777777765
Q ss_pred HHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccC
Q 008809 354 EAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAE 433 (552)
Q Consensus 354 ~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 433 (552)
++. +. ++|+.|+|++|.|+.... +...+....+.|+.|+|++|.|+.. +. .+..+++|+.|+|++
T Consensus 175 -----lp~-l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~l-p~----~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 175 -----LPE-LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHI-PE----NILSLDPTCTIILED 239 (571)
T ss_dssp -----CCC-CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCCC-CG----GGGGSCTTEEEECCS
T ss_pred -----cch-hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcceec-CH----HHhcCCCCCEEEeeC
Confidence 233 33 677777777777764221 2111111223448888888877742 22 233357788888888
Q ss_pred CCCCchHHHHHHH
Q 008809 434 NELKDDGAIQISK 446 (552)
Q Consensus 434 n~l~d~g~~~l~~ 446 (552)
|.++...+..+..
T Consensus 240 N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 240 NPLSSRIRESLSQ 252 (571)
T ss_dssp SSCCHHHHHHHHH
T ss_pred CcCCCcCHHHHHH
Confidence 8887655555443
No 109
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=7.7e-16 Score=146.80 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=71.5
Q ss_pred CCCccEEEccc-CCCChHHHHHHH-HHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCC---EEecCCC-CCChHH
Q 008809 282 TEKLRVLQFHN-NMTGDEGAQAIS-DVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLK---KLDLRDN-MFGVEA 355 (552)
Q Consensus 282 ~~~L~~L~Ls~-n~l~~~g~~~l~-~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~---~L~Ls~n-~l~~~~ 355 (552)
+++|++|++++ |.+.. ++ ..+..+++|+.|++++|+++. ++. +..+++|+ .|++++| .++...
T Consensus 79 l~~L~~L~l~~~n~l~~-----i~~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTY-----IDPDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIP 147 (239)
T ss_dssp CTTCCEEEEEEETTCCE-----ECTTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEEC
T ss_pred CcCCcEEECCCCCCeeE-----cCHHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcC
Confidence 34455555544 44443 21 123344555555555555443 221 33444444 5555555 444310
Q ss_pred HHHHHHHHccCCccc-EEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCC-CCcchHHHHHHHhhcC-CCcCEEEcc
Q 008809 356 GVALSKALSNYADLT-EVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGND-ITVEAAPVISACVAAK-QHLTKLNLA 432 (552)
Q Consensus 356 ~~~L~~~l~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~-~~L~~L~Ls 432 (552)
...+..+++|+ .|++++|.+...... ... .++|+.|++++|. ++..... .+..+ ++|+.|+|+
T Consensus 148 ----~~~~~~l~~L~~~L~l~~n~l~~i~~~-----~~~-~~~L~~L~L~~n~~l~~i~~~----~~~~l~~~L~~L~l~ 213 (239)
T 2xwt_C 148 ----VNAFQGLCNETLTLKLYNNGFTSVQGY-----AFN-GTKLDAVYLNKNKYLTVIDKD----AFGGVYSGPSLLDVS 213 (239)
T ss_dssp ----TTTTTTTBSSEEEEECCSCCCCEECTT-----TTT-TCEEEEEECTTCTTCCEECTT----TTTTCSBCCSEEECT
T ss_pred ----cccccchhcceeEEEcCCCCCcccCHh-----hcC-CCCCCEEEcCCCCCcccCCHH----HhhccccCCcEEECC
Confidence 12344556666 666666665532211 111 1456666666663 5543221 23344 566777777
Q ss_pred CCCCCchHHHHHHHHHhhCCCCccEEEccCC
Q 008809 433 ENELKDDGAIQISKALEQGHDQLKVVDMSSN 463 (552)
Q Consensus 433 ~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n 463 (552)
+|.++..... ..++|+.|+++++
T Consensus 214 ~N~l~~l~~~--------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 214 QTSVTALPSK--------GLEHLKELIARNT 236 (239)
T ss_dssp TCCCCCCCCT--------TCTTCSEEECTTC
T ss_pred CCccccCChh--------HhccCceeeccCc
Confidence 7666531110 3556666666665
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=1.2e-14 Score=139.71 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=83.0
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..+++|+.|++++|.+... .+..+..+++|+.|+|++|.++.. .+..+..+++|+.|+|++|.++.....
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~- 125 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTL----SAGVFDDLTELGTLGLANNQLASL----PLGVFDHLTQLDKLYLGGNQLKSLPSG- 125 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTT-
T ss_pred hcCcccCCEEECCCCcCCcc----CHhHhccCCcCCEEECCCCccccc----ChhHhcccCCCCEEEcCCCcCCCcChh-
Confidence 34455555555555555432 122344556666666666665542 123345566666666666666542211
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
....+++|++|+|++|.++...... +..+++|+.|+|++|.++.... ..+. .+++|+.|+|++|.++
T Consensus 126 ----~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 126 ----VFDRLTKLKELRLNTNQLQSIPAGA----FDKLTNLQTLSLSTNQLQSVPH----GAFD-RLGKLQTITLFGNQFD 192 (251)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT----TTTT-TCTTCCEEECCSCCBC
T ss_pred ----HhccCCcccEEECcCCcCCccCHHH----cCcCcCCCEEECCCCcCCccCH----HHHh-CCCCCCEEEeeCCcee
Confidence 1122567777777777776543322 3344777777777777764322 1233 5677888888888775
Q ss_pred HH--HHHHHHHHHh
Q 008809 467 RA--GARQLAQVVI 478 (552)
Q Consensus 467 ~~--g~~~l~~~l~ 478 (552)
.. ....+..++.
T Consensus 193 c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 193 CSRCEILYLSQWIR 206 (251)
T ss_dssp TTSTTHHHHHHHHH
T ss_pred CCccccHHHHHHHH
Confidence 43 3444555554
No 111
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.45 E-value=6.8e-16 Score=147.17 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=138.9
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCC-CChHHHHHHHH-HhhcCCCccEEEeeC-CCCChHHHHHH
Q 008809 255 SSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNM-TGDEGAQAISD-VVKHSPLLEDFRCSS-TRIGSEGGTAL 331 (552)
Q Consensus 255 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~-~l~~~~~L~~L~ls~-n~l~~~~~~~l 331 (552)
.+|+.|++++|+|+.... ..+..+++|++|++++|. ++. ++. .+..+++|++|++++ |.++.. -
T Consensus 31 ~~l~~L~l~~n~l~~i~~----~~~~~l~~L~~L~l~~n~~l~~-----i~~~~f~~l~~L~~L~l~~~n~l~~i----~ 97 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS----HAFSNLPNISRIYVSIDVTLQQ-----LESHSFYNLSKVTHIEIRNTRNLTYI----D 97 (239)
T ss_dssp TTCCEEEEESCCCSEECT----TTTTTCTTCCEEEEECCSSCCE-----ECTTTEESCTTCCEEEEEEETTCCEE----C
T ss_pred CcccEEEEeCCcceEECH----HHccCCCCCcEEeCCCCCCcce-----eCHhHcCCCcCCcEEECCCCCCeeEc----C
Confidence 467777777777654321 134556788888888886 765 332 467789999999998 888753 1
Q ss_pred HHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCccc---EEecCCC-CCCchHHHHHHHHHhcCCCCcc-EEEccCC
Q 008809 332 SEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLT---EVYLSYL-NLEDDGTVAITNALKGSAPLLE-VLELAGN 406 (552)
Q Consensus 332 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~---~L~L~~n-~l~~~~~~~l~~~l~~~~~~L~-~L~Ls~n 406 (552)
+..+..+++|+.|++++|.++. ++. +..+++|+ .|++++| .++......+ ..+++|+ .|++++|
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-----~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-----QGLCNETLTLKLYNN 166 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-----TTTBSSEEEEECCSC
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcCcccc-----cchhcceeEEEcCCC
Confidence 2456778999999999999876 333 66777777 9999999 8876432222 2368899 9999999
Q ss_pred CCCcchHHHHHHHhhcCCCcCEEEccCCC-CCchHHHHHHHHHhhCC-CCccEEEccCCCCCHHHHHHHHHHHhcCCCcc
Q 008809 407 DITVEAAPVISACVAAKQHLTKLNLAENE-LKDDGAIQISKALEQGH-DQLKVVDMSSNFIRRAGARQLAQVVIQKPGFK 484 (552)
Q Consensus 407 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~d~g~~~l~~~L~~~~-~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~ 484 (552)
.++..... .+.. ++|+.|+|++|. ++..... .+. .+ ++|+.|++++|.|+.. +.. .+++|+
T Consensus 167 ~l~~i~~~----~~~~-~~L~~L~L~~n~~l~~i~~~----~~~-~l~~~L~~L~l~~N~l~~l-----~~~--~~~~L~ 229 (239)
T 2xwt_C 167 GFTSVQGY----AFNG-TKLDAVYLNKNKYLTVIDKD----AFG-GVYSGPSLLDVSQTSVTAL-----PSK--GLEHLK 229 (239)
T ss_dssp CCCEECTT----TTTT-CEEEEEECTTCTTCCEECTT----TTT-TCSBCCSEEECTTCCCCCC-----CCT--TCTTCS
T ss_pred CCcccCHh----hcCC-CCCCEEEcCCCCCcccCCHH----Hhh-ccccCCcEEECCCCccccC-----Chh--HhccCc
Confidence 98853321 1222 689999999994 8753322 223 56 8999999999998753 211 478899
Q ss_pred EEEecCCC
Q 008809 485 QLNIDANI 492 (552)
Q Consensus 485 ~L~L~~N~ 492 (552)
.|+++++.
T Consensus 230 ~L~l~~~~ 237 (239)
T 2xwt_C 230 ELIARNTW 237 (239)
T ss_dssp EEECTTC-
T ss_pred eeeccCcc
Confidence 99998764
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.8e-14 Score=139.33 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=63.6
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHH
Q 008809 255 SSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEA 334 (552)
Q Consensus 255 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~ 334 (552)
++|+.|++++|.|+... .+..+++|++|+|++|.+.. ++. +..+++|+.|++++|+++.. +.
T Consensus 41 ~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~L~~N~i~~-----~~~-l~~l~~L~~L~L~~N~l~~l-----~~- 102 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA------GMQFFTNLKELHLSHNQISD-----LSP-LKDLTKLEELSVNRNRLKNL-----NG- 102 (263)
T ss_dssp TTCSEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCC-----CGG-GTTCSSCCEEECCSSCCSCC-----TT-
T ss_pred CcCcEEECcCCCcccch------HHhhCCCCCEEECCCCccCC-----Chh-hccCCCCCEEECCCCccCCc-----Cc-
Confidence 55555555555544321 22334455555555555544 222 44455555555555554431 11
Q ss_pred hhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHH
Q 008809 335 LESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAP 414 (552)
Q Consensus 335 l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 414 (552)
+.. ++|+.|++++|.++.. ..+..+++|+.|++++|.+++.. .+. .+++|+.|++++|.+++.
T Consensus 103 ~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~------~l~-~l~~L~~L~L~~N~i~~~--- 165 (263)
T 1xeu_A 103 IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV------MLG-FLSKLEVLDLHGNEITNT--- 165 (263)
T ss_dssp CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG------GGG-GCTTCCEEECTTSCCCBC---
T ss_pred ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh------HHc-cCCCCCEEECCCCcCcch---
Confidence 111 4555555555555441 23444455555555555544421 111 134455555555554443
Q ss_pred HHHHHhhcCCCcCEEEccCCCC
Q 008809 415 VISACVAAKQHLTKLNLAENEL 436 (552)
Q Consensus 415 ~l~~~l~~~~~L~~L~Ls~n~l 436 (552)
..+..+++|+.|++++|.+
T Consensus 166 ---~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 ---GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ---TTSTTCCCCCEEEEEEEEE
T ss_pred ---HHhccCCCCCEEeCCCCcc
Confidence 1233334555555555543
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=1.4e-14 Score=155.32 Aligned_cols=104 Identities=25% Similarity=0.245 Sum_probs=58.9
Q ss_pred CccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHH
Q 008809 312 LLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNAL 391 (552)
Q Consensus 312 ~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 391 (552)
.|+.|++++|.|+. ++. ++.+++|+.|+|++|.++. ++..+..+++|+.|+|++|.|+.. + .+
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GV 504 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GG
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-cc
Confidence 45666666666654 333 5556666666666666653 345566666666666666666541 1 12
Q ss_pred hcCCCCccEEEccCCCCCcch-HHHHHHHhhcCCCcCEEEccCCCCC
Q 008809 392 KGSAPLLEVLELAGNDITVEA-APVISACVAAKQHLTKLNLAENELK 437 (552)
Q Consensus 392 ~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~l~ 437 (552)
..+++|+.|+|++|.++... +.. +..+++|+.|+|++|.++
T Consensus 505 -~~l~~L~~L~Ls~N~l~~~~~p~~----l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 505 -ANLPRLQELLLCNNRLQQSAAIQP----LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp -TTCSSCCEEECCSSCCCSSSTTGG----GGGCTTCCEEECTTSGGG
T ss_pred -CCCCCCcEEECCCCCCCCCCCcHH----HhcCCCCCEEEecCCcCC
Confidence 22566666666666665542 322 333466666666666654
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=1.7e-13 Score=129.61 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=93.4
Q ss_pred CCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHH
Q 008809 339 THLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISA 418 (552)
Q Consensus 339 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 418 (552)
++|+.|+|++|.++.. .+..+..+++|+.|+|++|.++..... ....+++|+.|+|++|.++......
T Consensus 40 ~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~~~-----~~~~l~~L~~L~Ls~N~l~~l~~~~--- 107 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALPVG-----VFDSLTQLTVLDLGTNQLTVLPSAV--- 107 (229)
T ss_dssp TTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCCCCCCTTT---
T ss_pred CCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcChh-----hcccCCCcCEEECCCCcCCccChhH---
Confidence 4566666666665542 133455566666666666666542211 1123566777777777766533222
Q ss_pred HhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHH--
Q 008809 419 CVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEE-- 496 (552)
Q Consensus 419 ~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~-- 496 (552)
+..+++|+.|+|++|.|+. +...+. .+++|+.|+|++|.|+... ...+..+++|+.|+|++|+++..
T Consensus 108 -~~~l~~L~~L~Ls~N~l~~-----lp~~~~-~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 108 -FDRLVHLKELFMCCNKLTE-----LPRGIE-RLTHLTHLALDQNQLKSIP----HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp -TTTCTTCCEEECCSSCCCS-----CCTTGG-GCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred -hCcchhhCeEeccCCcccc-----cCcccc-cCCCCCEEECCCCcCCccC----HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 3344778888888887763 233344 6778888888888776532 13355678888888888888744
Q ss_pred HHHHHHHHHhcCcccccccc
Q 008809 497 GIDEVKEIFKNSPDMLESLE 516 (552)
Q Consensus 497 g~~~l~~~l~~~~~~l~~l~ 516 (552)
.+..+...+..+...+..++
T Consensus 177 ~~~~l~~~~~~~~~~~~~~~ 196 (229)
T 3e6j_A 177 DIMYLRNWVADHTSIAMRWD 196 (229)
T ss_dssp GGHHHHHHHHHCGGGEEEES
T ss_pred hhHHHHHHHHhCcccccccc
Confidence 46677777776655544433
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=1.5e-13 Score=139.36 Aligned_cols=90 Identities=27% Similarity=0.276 Sum_probs=39.7
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHH
Q 008809 395 APLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLA 474 (552)
Q Consensus 395 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~ 474 (552)
+++|+.|+|++|.++...+.. +..+++|+.|+|++|.|+......+ ..+. .+++|+.|+|++|.|+......+
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~-~~~~-~l~~L~~L~L~~N~l~~l~~~~~- 183 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNA----FEDMAQLQKLYLSQNQISRFPVELI-KDGN-KLPKLMLLDLSSNKLKKLPLTDL- 183 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCSCCGGGT-C-----CTTCCEEECCSSCCCCCCHHHH-
T ss_pred CcCCCEEECCCCcccEECHHH----hCCcccCCEEECCCCcCCeeCHHHh-cCcc-cCCcCCEEECCCCCCCccCHHHh-
Confidence 345555555555554432221 2233555555555555543211110 0001 35556666666665554332222
Q ss_pred HHHhcCCC--ccEEEecCCCCC
Q 008809 475 QVVIQKPG--FKQLNIDANIIS 494 (552)
Q Consensus 475 ~~l~~~~~--L~~L~L~~N~i~ 494 (552)
..++. |+.|+|++|++.
T Consensus 184 ---~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 184 ---QKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ---HHSCHHHHTTEECCSSCEE
T ss_pred ---hhccHhhcceEEecCCCcc
Confidence 22443 355666666654
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.29 E-value=1.2e-13 Score=152.63 Aligned_cols=118 Identities=23% Similarity=0.151 Sum_probs=75.0
Q ss_pred HHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHH
Q 008809 249 ALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGG 328 (552)
Q Consensus 249 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~ 328 (552)
..+..+..|+.|+|++|.|... ...+..+++|++|+|++|.+.. ++..+..+++|+.|+|++|.|+.
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l-----~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~--- 284 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNI-----SANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLTS--- 284 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCC-----CGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCSS---
T ss_pred hhhccCCCCcEEECCCCCCCCC-----ChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCCc---
Confidence 4455556777777777776521 1122245677777777777764 55556677777777777777763
Q ss_pred HHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 329 TALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 329 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
++..++.+++|+.|+|++|.|+. ++..+..+++|+.|+|++|.+.......
T Consensus 285 --lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 285 --LPAELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp --CCSSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred --cChhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCCChHH
Confidence 56666777777777777777764 4555677777777777777777644433
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=2.6e-13 Score=149.91 Aligned_cols=183 Identities=13% Similarity=0.128 Sum_probs=106.2
Q ss_pred HhcCCCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHH
Q 008809 277 ELIPSTEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAG 356 (552)
Q Consensus 277 ~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 356 (552)
..+..++.|+.|+|++|.+.. ++..+..+++|+.|+|++|.|+. ++..+..+++|+.|+|++|.|+.
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~--- 284 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLTS--- 284 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCSS---
T ss_pred hhhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCCc---
Confidence 345567899999999998876 66666788999999999999884 67778889999999999999884
Q ss_pred HHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCC
Q 008809 357 VALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENEL 436 (552)
Q Consensus 357 ~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 436 (552)
++..+..+++|+.|+|++|.|+. +...+ ..+++|+.|+|++|.|+...+..+...- ..+..|+|++|.+
T Consensus 285 --lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~~~---~~~~~l~l~~N~l 353 (727)
T 4b8c_D 285 --LPAELGSCFQLKYFYFFDNMVTT-----LPWEF-GNLCNLQFLGVEGNPLEKQFLKILTEKS---VTGLIFYLRDNRP 353 (727)
T ss_dssp --CCSSGGGGTTCSEEECCSSCCCC-----CCSST-TSCTTCCCEECTTSCCCSHHHHHHHHHH---HHHHHHHHHHCCC
T ss_pred --cChhhcCCCCCCEEECCCCCCCc-----cChhh-hcCCCccEEeCCCCccCCCChHHHhhcc---hhhhHHhhccCcc
Confidence 57778889999999999998874 22222 2378899999999999876665554321 1122356777766
Q ss_pred CchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHH----HHHhcCCCccEEEecCCCCC
Q 008809 437 KDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLA----QVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 437 ~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~----~~l~~~~~L~~L~L~~N~i~ 494 (552)
+.. ....|+.|++++|.........+. ..+..+..+....+++|.+.
T Consensus 354 ~~~-----------~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 354 EIP-----------LPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCC-----------CCCC-----------------------------------------CCC
T ss_pred cCc-----------CccccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 531 345677777777611111111111 12223445556666777664
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=1.5e-13 Score=127.92 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=6.3
Q ss_pred CccEEEcccCCCC
Q 008809 284 KLRVLQFHNNMTG 296 (552)
Q Consensus 284 ~L~~L~Ls~n~l~ 296 (552)
+|++|++++|.+.
T Consensus 29 ~l~~L~l~~n~l~ 41 (208)
T 2o6s_A 29 QTTYLDLETNSLK 41 (208)
T ss_dssp TCSEEECCSSCCC
T ss_pred CCcEEEcCCCccC
Confidence 4455555554444
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=5.2e-13 Score=125.39 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=18.0
Q ss_pred hcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCC
Q 008809 336 ESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLE 380 (552)
Q Consensus 336 ~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~ 380 (552)
..+++|+.|+|++|.++.. .+..+..+++|+.|+|++|.++
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TTCTTCCEEECCSSCCCEE----CTTTTTTCSSCCEEECCSSCCC
T ss_pred hCCCCCCEEECCCCcCCCc----CHHHhhCCcCCCEEECCCCcCC
Confidence 3344455555555444431 1233444444444444444444
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=4.3e-13 Score=125.99 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=121.1
Q ss_pred cEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhc
Q 008809 314 EDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKG 393 (552)
Q Consensus 314 ~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 393 (552)
+.++++++.++. ++..+ .++|+.|++++|.++... +..+..+++|+.|+|++|.++......+ .
T Consensus 14 ~~v~c~~~~l~~-----iP~~l--~~~l~~L~l~~n~i~~i~----~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-----~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLTE-----IPTNL--PETITEIRLEQNTIKVIP----PGAFSPYKKLRRIDLSNNQISELAPDAF-----Q 77 (220)
T ss_dssp TEEECTTSCCSS-----CCSSC--CTTCCEEECCSSCCCEEC----TTSSTTCTTCCEEECCSSCCCEECTTTT-----T
T ss_pred CEEEcCCCCcCc-----CCCcc--CcCCCEEECCCCcCCCcC----HhHhhCCCCCCEEECCCCcCCCcCHHHh-----h
Confidence 456777776654 33322 257899999999887631 2357788999999999999987533333 2
Q ss_pred CCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHH
Q 008809 394 SAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQL 473 (552)
Q Consensus 394 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l 473 (552)
.+++|++|+|++|.++..... .+..+++|+.|+|++|.|+.... ..+. .+++|+.|+|++|.|+...
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~----~f~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~L~~N~l~~~~---- 144 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKS----LFEGLFSLQLLLLNANKINCLRV----DAFQ-DLHNLNLLSLYDNKLQTIA---- 144 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCT----TTTT-TCTTCCEEECCSSCCSCCC----
T ss_pred CCcCCCEEECCCCcCCccCHh----HccCCCCCCEEECCCCCCCEeCH----HHcC-CCCCCCEEECCCCcCCEEC----
Confidence 378999999999999864432 24556999999999999886433 2344 7899999999999998643
Q ss_pred HHHHhcCCCccEEEecCCCCCH-HHHHHHHHHHhcC
Q 008809 474 AQVVIQKPGFKQLNIDANIISE-EGIDEVKEIFKNS 508 (552)
Q Consensus 474 ~~~l~~~~~L~~L~L~~N~i~~-~g~~~l~~~l~~~ 508 (552)
...+..+++|+.|+|++|++.. ..+..+.+.+..+
T Consensus 145 ~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~ 180 (220)
T 2v9t_B 145 KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTN 180 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred HHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhC
Confidence 2345568999999999999763 4566666666654
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=4.1e-13 Score=124.87 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=18.4
Q ss_pred CCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCC
Q 008809 255 SSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTG 296 (552)
Q Consensus 255 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 296 (552)
.+|+.|++++|.++.... ..+..+++|++|++++|.+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN----GVFDELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp TTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCC
T ss_pred CCCcEEEcCCCccCcCCh----hhhcccccCcEEECCCCccC
Confidence 456666666666543211 11233455555555555544
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=2.5e-13 Score=145.49 Aligned_cols=125 Identities=21% Similarity=0.298 Sum_probs=98.1
Q ss_pred CccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHH
Q 008809 284 KLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKAL 363 (552)
Q Consensus 284 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l 363 (552)
.|+.|+|++|.++. ++. +..+++|+.|++++|.|+. +|..++.+++|+.|+|++|.++. ++ .+
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~-----lp-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN-----VD-GV 504 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC-----CG-GG
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC-----Cc-cc
Confidence 68899999998886 555 7888999999999999884 67788899999999999999986 35 78
Q ss_pred ccCCcccEEecCCCCCCchH-HHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEc
Q 008809 364 SNYADLTEVYLSYLNLEDDG-TVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNL 431 (552)
Q Consensus 364 ~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 431 (552)
..+++|+.|+|++|.++... +..+ ..+++|+.|+|++|.++...+ .+..++..+++|+.|++
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPL-----VSCPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGG-----GGCTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHH-----hcCCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCccCC
Confidence 88999999999999988743 3223 237899999999999876432 23333445689999875
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=4.4e-13 Score=125.89 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=38.6
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHH
Q 008809 395 APLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLA 474 (552)
Q Consensus 395 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~ 474 (552)
+++|++|+|++|.++...+.. +..+++|++|+|++|.|+.... ..+. .+++|+.|+|++|.|+... +
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~----~~~~-~l~~L~~L~L~~N~l~~~~----~ 146 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKM----FKGLESLKTLMLRSNRITCVGN----DSFI-GLSSVRLLSLYDNQITTVA----P 146 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCT----TSST-TCTTCSEEECTTSCCCCBC----T
T ss_pred CCCCCEEECCCCccCccCHhH----hcCCcCCCEEECCCCcCCeECH----hHcC-CCccCCEEECCCCcCCEEC----H
Confidence 344444444444444332211 2233455555555555443211 1122 4455555555555554321 2
Q ss_pred HHHhcCCCccEEEecCCCCC
Q 008809 475 QVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 475 ~~l~~~~~L~~L~L~~N~i~ 494 (552)
..+..+++|+.|+|++|+++
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEE
T ss_pred HHhcCCCCCCEEEecCcCCc
Confidence 23334555566666666544
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=1.5e-12 Score=131.92 Aligned_cols=178 Identities=22% Similarity=0.184 Sum_probs=87.6
Q ss_pred ccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcC-CCCCccEEEcccCCCChHHHHHHH-HH
Q 008809 229 LKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIP-STEKLRVLQFHNNMTGDEGAQAIS-DV 306 (552)
Q Consensus 229 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~-~~ 306 (552)
-+.++++++.++.. +..+ ...++.|+|++|.|+..... .+. .+++|++|+|++|.+.. ++ ..
T Consensus 20 ~~~l~c~~~~l~~i-----P~~~--~~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~-----i~~~~ 83 (361)
T 2xot_A 20 SNILSCSKQQLPNV-----PQSL--PSYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNF-----ISSEA 83 (361)
T ss_dssp TTEEECCSSCCSSC-----CSSC--CTTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCE-----ECTTT
T ss_pred CCEEEeCCCCcCcc-----CccC--CCCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCc-----cChhh
Confidence 45677777766641 1111 23467777777776543211 122 45666677776666654 22 23
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..+++|+.|+|++|+|... .+..+..+++|+.|+|++|.++... +..+..+++|+.|+|++|.|.......
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTL----DEFLFSDLQALEVLLLYNNHIVVVD----RNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred ccCCCCCCEEECCCCcCCcC----CHHHhCCCcCCCEEECCCCcccEEC----HHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 45566666666666665542 1223445566666666666655421 234455556666666666555421111
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCC--cCEEEccCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQH--LTKLNLAENEL 436 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~--L~~L~Ls~n~l 436 (552)
+. .+ ..+++|+.|+|++|.|+......+..+ +. |+.|+|++|.+
T Consensus 156 ~~-~~-~~l~~L~~L~L~~N~l~~l~~~~~~~l----~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 156 IK-DG-NKLPKLMLLDLSSNKLKKLPLTDLQKL----PAWVKNGLYLHNNPL 201 (361)
T ss_dssp TC------CTTCCEEECCSSCCCCCCHHHHHHS----CHHHHTTEECCSSCE
T ss_pred hc-Cc-ccCCcCCEEECCCCCCCccCHHHhhhc----cHhhcceEEecCCCc
Confidence 00 00 113455555555555554433333222 32 24455555544
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=1.6e-12 Score=122.91 Aligned_cols=131 Identities=23% Similarity=0.292 Sum_probs=55.6
Q ss_pred CccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHH-HH
Q 008809 228 VLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAIS-DV 306 (552)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~ 306 (552)
+|++|+|++|.+.... ...+..+++|+.|+|++|.|+.... ..+..+++|++|+|++|.+.. ++ ..
T Consensus 41 ~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~~l~~L~~L~Ls~N~l~~-----l~~~~ 107 (229)
T 3e6j_A 41 NAQILYLHDNQITKLE----PGVFDSLINLKELYLGSNQLGALPV----GVFDSLTQLTVLDLGTNQLTV-----LPSAV 107 (229)
T ss_dssp TCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCC-----CCTTT
T ss_pred CCCEEEcCCCccCccC----HHHhhCccCCcEEECCCCCCCCcCh----hhcccCCCcCEEECCCCcCCc-----cChhH
Confidence 4555555555444321 1222333455555555555432110 112334455555555554443 21 12
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCC
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLE 380 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~ 380 (552)
+..+++|+.|++++|+|.. ++..+..+++|+.|+|++|.++... ...+..+++|+.|++++|.+.
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIP----HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECTTSCBC
T ss_pred hCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCccC----HHHHhCCCCCCEEEeeCCCcc
Confidence 3344455555555555442 3334444445555555555444310 122334444444444444443
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=5.7e-12 Score=110.42 Aligned_cols=132 Identities=22% Similarity=0.228 Sum_probs=63.7
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
++|++|++++|.+++.. +...+..+++|+.|++++|.++.. ..+..+++|++|++++|.+... ++..
T Consensus 17 ~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVL 83 (149)
T ss_dssp GGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHH
T ss_pred ccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHH
Confidence 35666666666555211 222334445666666666665443 2344555666666666655531 3333
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecC
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLS 375 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~ 375 (552)
+..+++|+.|++++|+++... .+..+..+++|+.|++++|.++.... .....+..+++|+.|+++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 444555555555555555421 12344555555555555555543210 001234445555555543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=5.6e-12 Score=110.46 Aligned_cols=42 Identities=31% Similarity=0.338 Sum_probs=17.2
Q ss_pred hcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCc
Q 008809 336 ESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLED 381 (552)
Q Consensus 336 ~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~ 381 (552)
..+++|+.|++++|.++.. ++..+..+++|+.|++++|.+++
T Consensus 61 ~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 61 PKLNKLKKLELSDNRVSGG----LEVLAEKCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp CCCTTCCEEECCSSCCCSC----THHHHHHCTTCCEEECTTSCCCS
T ss_pred hcCCCCCEEECCCCcccch----HHHHhhhCCCCCEEECCCCcCCC
Confidence 3344444444444444331 12233334444444444444443
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=1.1e-12 Score=123.29 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=62.3
Q ss_pred hhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHH
Q 008809 335 LESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAP 414 (552)
Q Consensus 335 l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 414 (552)
+..+++|+.|+|++|.++... +..+..+++|+.|+|++|.+.......+ ..+++|++|+|++|.++...+.
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~ 123 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIE----EGAFEGASGVNEILLTSNRLENVQHKMF-----KGLESLKTLMLRSNRITCVGND 123 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCCGGGG-----TTCSSCCEEECTTSCCCCBCTT
T ss_pred hccCCCCCEEECCCCcCCEEC----HHHhCCCCCCCEEECCCCccCccCHhHh-----cCCcCCCEEECCCCcCCeECHh
Confidence 344555666666666555421 2244555666666666666554322111 2256666666666666654332
Q ss_pred HHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008809 415 VISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 415 ~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
. +..+++|+.|+|++|.|+.... ..+. .+++|+.|+|++|.+.
T Consensus 124 ~----~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 124 S----FIGLSSVRLLSLYDNQITTVAP----GAFD-TLHSLSTLNLLANPFN 166 (220)
T ss_dssp S----STTCTTCSEEECTTSCCCCBCT----TTTT-TCTTCCEEECCSCCEE
T ss_pred H----cCCCccCCEEECCCCcCCEECH----HHhc-CCCCCCEEEecCcCCc
Confidence 2 2334677777777776665322 2233 5667777777777654
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=2.7e-12 Score=114.91 Aligned_cols=136 Identities=19% Similarity=0.156 Sum_probs=65.9
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
++|++|++++|.+++.. +...+..+++|+.|++++|.|+.. ..+..+++|++|++++|.+... ++..
T Consensus 24 ~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDML 90 (168)
T ss_dssp TSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCHH
T ss_pred ccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHHH
Confidence 45666666666655211 222233445666666666666542 2344555666666666655531 2333
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCC
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNL 379 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l 379 (552)
+..+++|+.|++++|.++... .+..+..+++|+.|++++|.++.... .....+..+++|+.|++++|.+
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~---~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDIS---TLEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSG---GGGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTS
T ss_pred HhhCCCCCEEeccCCccCcch---hHHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCCh
Confidence 344555666666655554411 01344455555555555555443210 0012344455555555555543
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=5.6e-12 Score=112.90 Aligned_cols=138 Identities=21% Similarity=0.170 Sum_probs=94.0
Q ss_pred CCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHH
Q 008809 338 CTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVIS 417 (552)
Q Consensus 338 ~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 417 (552)
.++|+.|++++|.++... ++..+..+++|+.|++++|.+... ..+ ..+++|++|++++|.++...+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~-~~l~~L~~L~Ls~N~l~~~~~~~-- 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNL-PKLPKLKKLELSENRIFGGLDML-- 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSC-CCCSSCCEEEEESCCCCSCCCHH--
T ss_pred cccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhh-ccCCCCCEEECcCCcCchHHHHH--
Confidence 457788888887776211 344456778888888888887763 122 23678888888888887743322
Q ss_pred HHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008809 418 ACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 418 ~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
+..+++|+.|+|++|.|++... ...+. .+++|+.|++++|.++.... .....+..+++|+.|++++|.+.
T Consensus 91 --~~~l~~L~~L~Ls~N~l~~~~~---~~~l~-~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 --AEKLPNLTHLNLSGNKLKDIST---LEPLK-KLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp --HHHCTTCCEEECBSSSCCSSGG---GGGGS-SCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSC
T ss_pred --HhhCCCCCEEeccCCccCcchh---HHHHh-cCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChh
Confidence 3335889999999998876321 13344 78889999999998865421 11235667899999999998874
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=4.2e-13 Score=123.87 Aligned_cols=142 Identities=22% Similarity=0.236 Sum_probs=90.7
Q ss_pred HHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCc
Q 008809 331 LSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITV 410 (552)
Q Consensus 331 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 410 (552)
++..+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.+.... .... .+++|++|++++|.++.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l~--~~~~----~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKKIE--NLDA----VADTLEELWISYNQIAS 107 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECSCS--SHHH----HHHHCSEEEEEEEECCC
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCccccc--chhh----cCCcCCEEECcCCcCCc
Confidence 33456667777777777777665 23 5556677777777777666321 1111 13568888888888776
Q ss_pred chHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHH------HHHHHHHHhcCCCcc
Q 008809 411 EAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAG------ARQLAQVVIQKPGFK 484 (552)
Q Consensus 411 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g------~~~l~~~l~~~~~L~ 484 (552)
. ..+..+ ++|+.|+|++|.+++.+.. ..+. .+++|+.|++++|.++... .......+..+++|+
T Consensus 108 l--~~~~~l----~~L~~L~l~~N~i~~~~~~---~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 108 L--SGIEKL----VNLRVLYMSNNKITNWGEI---DKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp H--HHHHHH----HHSSEEEESEEECCCHHHH---HHHT-TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred C--CccccC----CCCCEEECCCCcCCchhHH---HHHh-cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 2 234333 7888888888888764321 2344 6788888888888775542 123345567789999
Q ss_pred EEEecCCCCCHH
Q 008809 485 QLNIDANIISEE 496 (552)
Q Consensus 485 ~L~L~~N~i~~~ 496 (552)
.|| +|++++.
T Consensus 178 ~Ld--~~~i~~~ 187 (198)
T 1ds9_A 178 KLD--GMPVDVD 187 (198)
T ss_dssp EEC--CGGGTTT
T ss_pred EEC--CcccCHH
Confidence 886 7777653
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.10 E-value=1.8e-11 Score=110.55 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHH-H
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAIS-D 305 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~ 305 (552)
.+|++|++++|.++.. .......++|+.|++++|.|++. ..+..+++|++|++++|.+.. ++ .
T Consensus 19 ~~L~~L~l~~n~l~~i-----~~~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~-----~~~~ 82 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI-----ENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICR-----IGEG 82 (176)
T ss_dssp TSCEEEECTTSCCCSC-----CCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCE-----ECSC
T ss_pred CCceEEEeeCCCCchh-----HHhhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccc-----cCcc
Confidence 4677777777766642 11111223677777777776542 245556677777777776664 32 1
Q ss_pred HhhcCCCccEEEeeCCCCChHHHHHHHH--HhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCC
Q 008809 306 VVKHSPLLEDFRCSSTRIGSEGGTALSE--ALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLE 380 (552)
Q Consensus 306 ~l~~~~~L~~L~ls~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~ 380 (552)
.+..+++|+.|++++|.++. ++. .+..+++|+.|++++|.++.... .-...+..+++|+.|++++|.+.
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~-----~~~~~~l~~l~~L~~L~l~~N~i~~~~~-~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVE-----LGDLDPLASLKSLTYLCILRNPVTNKKH-YRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCC-----GGGGGGGGGCTTCCEEECCSSGGGGSTT-HHHHHHHHCTTCSEETTEECCHH
T ss_pred hhhcCCCCCEEECCCCcCCc-----chhhHhhhcCCCCCEEEecCCCCCCcHh-HHHHHHHHCCccceeCCCcCCHH
Confidence 23556666677776666654 222 45566666666666666543100 00112455566666666655543
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=1.1e-12 Score=121.04 Aligned_cols=8 Identities=38% Similarity=0.517 Sum_probs=3.4
Q ss_pred CCCcCEEE
Q 008809 423 KQHLTKLN 430 (552)
Q Consensus 423 ~~~L~~L~ 430 (552)
+++|+.|+
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 34444443
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=2.8e-11 Score=109.24 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=16.0
Q ss_pred CccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCC
Q 008809 312 LLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFG 352 (552)
Q Consensus 312 ~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 352 (552)
+|+.|++++|.++. + ..+..+++|+.|++++|.++
T Consensus 43 ~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp CCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCC
T ss_pred CCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCccc
Confidence 45555555554443 1 23334444445555544444
No 135
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.06 E-value=1.3e-10 Score=103.31 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCC-CCCchHHHHHHHHHhhCCCCccEEEccCC-CCCHHHHHHH
Q 008809 396 PLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAEN-ELKDDGAIQISKALEQGHDQLKVVDMSSN-FIRRAGARQL 473 (552)
Q Consensus 396 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n-~i~~~g~~~l 473 (552)
..|+.||+++|.+++.+...+ ..+++|++|+|++| .|+|.|+..|+..-. .+++|++|+|++| .|++.|+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLEN-LQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHH-HHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhccc-ccCCCCEEEcCCCCcCCHHHHHHH
Confidence 478999999999998887654 45699999999999 499999988874100 1357999999998 5999998776
Q ss_pred HHHHhcCCCccEEEecCCC-CCHHH--HHHHHHHHhcC
Q 008809 474 AQVVIQKPGFKQLNIDANI-ISEEG--IDEVKEIFKNS 508 (552)
Q Consensus 474 ~~~l~~~~~L~~L~L~~N~-i~~~g--~~~l~~~l~~~ 508 (552)
+ .+++|+.|+|++|+ |++.| +..+.+.+.+.
T Consensus 136 ~----~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 136 H----HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp G----GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred h----cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 5 48999999999996 99877 56677776654
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.05 E-value=1.7e-12 Score=131.01 Aligned_cols=238 Identities=16% Similarity=0.085 Sum_probs=125.3
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHhhccCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHH-HHHH
Q 008809 168 TKICFSNRSFGLEAARVAEPILVSINSQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEK-GVRA 246 (552)
Q Consensus 168 ~~L~ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~-~~~~ 246 (552)
+.++.++++++.. ...++.++++|+|++|.++..+...+..+ ++|++|+|++|++... ..
T Consensus 12 ~~v~C~~~~Lt~i--------P~~l~~~l~~L~Ls~N~i~~i~~~~f~~l---------~~L~~L~Ls~N~i~~~i~~-- 72 (350)
T 4ay9_X 12 RVFLCQESKVTEI--------PSDLPRNAIELRFVLTKLRVIQKGAFSGF---------GDLEKIEISQNDVLEVIEA-- 72 (350)
T ss_dssp TEEEEESTTCCSC--------CTTCCTTCSEEEEESCCCSEECTTSSTTC---------TTCCEEEEECCTTCCEECT--
T ss_pred CEEEecCCCCCcc--------CcCcCCCCCEEEccCCcCCCcCHHHHcCC---------CCCCEEECcCCCCCCccCh--
Confidence 3455566665421 12224567777777777765544333333 5777777777765321 10
Q ss_pred HHHHHhcCCCccE-EEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHH-HhhcCCCccEEEeeCC-CC
Q 008809 247 FGALLESQSSLEE-LYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISD-VVKHSPLLEDFRCSST-RI 323 (552)
Q Consensus 247 l~~~l~~~~~L~~-L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~ls~n-~l 323 (552)
..+..++++.. +.+.+|+|+.... ..+..+++|++|++++|.+.. ++. .+.....+..|++.++ .+
T Consensus 73 --~~f~~L~~l~~~l~~~~N~l~~l~~----~~f~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~l~~l~l~~~~~i 141 (350)
T 4ay9_X 73 --DVFSNLPKLHEIRIEKANNLLYINP----EAFQNLPNLQYLLISNTGIKH-----LPDVHKIHSLQKVLLDIQDNINI 141 (350)
T ss_dssp --TSBCSCTTCCEEEEEEETTCCEECT----TSBCCCTTCCEEEEEEECCSS-----CCCCTTCCBSSCEEEEEESCTTC
T ss_pred --hHhhcchhhhhhhcccCCcccccCc----hhhhhcccccccccccccccc-----CCchhhcccchhhhhhhcccccc
Confidence 12334455544 5555666654221 234556777888887777654 221 1223345666777553 34
Q ss_pred ChHHHHHHHHHhhcC-CCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCC-CCCCchHHHHHHHHHhcCCCCccEE
Q 008809 324 GSEGGTALSEALESC-THLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSY-LNLEDDGTVAITNALKGSAPLLEVL 401 (552)
Q Consensus 324 ~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~~L~~L 401 (552)
..-. ...+..+ ..++.|++++|.++. ++.......+|+.|++++ |.++... ......+++|++|
T Consensus 142 ~~l~----~~~f~~~~~~l~~L~L~~N~i~~-----i~~~~f~~~~L~~l~l~~~n~l~~i~-----~~~f~~l~~L~~L 207 (350)
T 4ay9_X 142 HTIE----RNSFVGLSFESVILWLNKNGIQE-----IHNSAFNGTQLDELNLSDNNNLEELP-----NDVFHGASGPVIL 207 (350)
T ss_dssp CEEC----TTSSTTSBSSCEEEECCSSCCCE-----ECTTSSTTEEEEEEECTTCTTCCCCC-----TTTTTTEECCSEE
T ss_pred cccc----ccchhhcchhhhhhccccccccC-----CChhhccccchhHHhhccCCcccCCC-----HHHhccCcccchh
Confidence 4310 0112222 356777777777765 333444556777777764 4555421 1111235677777
Q ss_pred EccCCCCCcchHHHHHHHhhcCCCcCEEEccCC-CCCchHHHHHHHHHhhCCCCccEEEccCC
Q 008809 402 ELAGNDITVEAAPVISACVAAKQHLTKLNLAEN-ELKDDGAIQISKALEQGHDQLKVVDMSSN 463 (552)
Q Consensus 402 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n 463 (552)
++++|.|+..... ...+|+.|.+.++ .++. ++ .+. .+++|+.++++++
T Consensus 208 dLs~N~l~~lp~~-------~~~~L~~L~~l~~~~l~~-----lP-~l~-~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 208 DISRTRIHSLPSY-------GLENLKKLRARSTYNLKK-----LP-TLE-KLVALMEASLTYP 256 (350)
T ss_dssp ECTTSCCCCCCSS-------SCTTCCEEECTTCTTCCC-----CC-CTT-TCCSCCEEECSCH
T ss_pred hcCCCCcCccChh-------hhccchHhhhccCCCcCc-----CC-Cch-hCcChhhCcCCCC
Confidence 8877777653221 1256666665444 2322 11 233 5677777777654
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.03 E-value=1.8e-12 Score=130.78 Aligned_cols=240 Identities=12% Similarity=0.077 Sum_probs=157.5
Q ss_pred ccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHH
Q 008809 196 LKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAV 275 (552)
Q Consensus 196 L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 275 (552)
-+.++.+++.++..+.... .++++|+|++|+|+.... ..+..+++|++|+|++|.+.....
T Consensus 11 ~~~v~C~~~~Lt~iP~~l~------------~~l~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~i~~~i~--- 71 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDLP------------RNAIELRFVLTKLRVIQK----GAFSGFGDLEKIEISQNDVLEVIE--- 71 (350)
T ss_dssp TTEEEEESTTCCSCCTTCC------------TTCSEEEEESCCCSEECT----TSSTTCTTCCEEEEECCTTCCEEC---
T ss_pred CCEEEecCCCCCccCcCcC------------CCCCEEEccCCcCCCcCH----HHHcCCCCCCEEECcCCCCCCccC---
Confidence 4678888888776542211 589999999999986422 235567999999999999743211
Q ss_pred HHhcCCCCCccE-EEcccCCCChHHHHHH-HHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCC-CCCC
Q 008809 276 CELIPSTEKLRV-LQFHNNMTGDEGAQAI-SDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRD-NMFG 352 (552)
Q Consensus 276 ~~~l~~~~~L~~-L~Ls~n~l~~~g~~~l-~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~ 352 (552)
..++..++++.+ +.+++|++.. + +..+..+++|+.|++++|++.... ........++..|++.+ +.+.
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~-----l~~~~f~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLY-----INPEAFQNLPNLQYLLISNTGIKHLP----DVHKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCE-----ECTTSBCCCTTCCEEEEEEECCSSCC----CCTTCCBSSCEEEEEESCTTCC
T ss_pred hhHhhcchhhhhhhcccCCcccc-----cCchhhhhccccccccccccccccCC----chhhcccchhhhhhhccccccc
Confidence 113455667665 5667788876 4 345778899999999999986521 11223345677888865 4555
Q ss_pred hHHHHHHHHHHccC-CcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccC-CCCCcchHHHHHHHhhcCCCcCEEE
Q 008809 353 VEAGVALSKALSNY-ADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAG-NDITVEAAPVISACVAAKQHLTKLN 430 (552)
Q Consensus 353 ~~~~~~L~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~ 430 (552)
.-. ...+..+ ..++.|++++|.|+..... ... ..+|+.|++++ |.++...... +..+++|+.|+
T Consensus 143 ~l~----~~~f~~~~~~l~~L~L~~N~i~~i~~~-----~f~-~~~L~~l~l~~~n~l~~i~~~~----f~~l~~L~~Ld 208 (350)
T 4ay9_X 143 TIE----RNSFVGLSFESVILWLNKNGIQEIHNS-----AFN-GTQLDELNLSDNNNLEELPNDV----FHGASGPVILD 208 (350)
T ss_dssp EEC----TTSSTTSBSSCEEEECCSSCCCEECTT-----SST-TEEEEEEECTTCTTCCCCCTTT----TTTEECCSEEE
T ss_pred ccc----ccchhhcchhhhhhccccccccCCChh-----hcc-ccchhHHhhccCCcccCCCHHH----hccCcccchhh
Confidence 411 1223333 4689999999999863221 112 46899999985 5566543322 44558999999
Q ss_pred ccCCCCCchHHHHHHHHHhhCCCCccEEEccCC-CCCHHHHHHHHHHHhcCCCccEEEecCC
Q 008809 431 LAENELKDDGAIQISKALEQGHDQLKVVDMSSN-FIRRAGARQLAQVVIQKPGFKQLNIDAN 491 (552)
Q Consensus 431 Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~L~~L~L~~N 491 (552)
|++|.|+.- .. . ....|+.|.+.++ .++. ++ .+..+++|+.+++.++
T Consensus 209 Ls~N~l~~l-----p~--~-~~~~L~~L~~l~~~~l~~-----lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 209 ISRTRIHSL-----PS--Y-GLENLKKLRARSTYNLKK-----LP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTSCCCCC-----CS--S-SCTTCCEEECTTCTTCCC-----CC-CTTTCCSCCEEECSCH
T ss_pred cCCCCcCcc-----Ch--h-hhccchHhhhccCCCcCc-----CC-CchhCcChhhCcCCCC
Confidence 999998752 11 1 4567777777665 3332 33 2566889999999754
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=4.4e-11 Score=109.59 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=17.8
Q ss_pred hcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCC
Q 008809 336 ESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLE 380 (552)
Q Consensus 336 ~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~ 380 (552)
..+++|+.|+|++|.++.. .+..+..+++|+.|+|++|.++
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGI----EPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp GGCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSCCCC
T ss_pred ccCCCCCEEECCCCCCCCc----CHhHcCCcccCCEEECCCCcCC
Confidence 3444444444444444431 1223344444444444444444
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=7e-11 Score=108.26 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=19.8
Q ss_pred CCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008809 451 GHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 451 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
.+++|+.|+|++|.|+.. .+..+..+++|+.|+|++|+++
T Consensus 100 ~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCCCcc
Confidence 345555555555555432 1223334555566666666554
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.91 E-value=1.3e-10 Score=106.45 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=6.2
Q ss_pred CCCccEEEccCCCC
Q 008809 452 HDQLKVVDMSSNFI 465 (552)
Q Consensus 452 ~~~L~~L~Ls~n~i 465 (552)
+++|+.|+|++|.+
T Consensus 125 l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 125 LSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSCE
T ss_pred CccccEEEeCCCCe
Confidence 34444444444433
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.90 E-value=1.5e-10 Score=106.18 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=37.1
Q ss_pred CCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC-HHHHHHHH
Q 008809 424 QHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS-EEGIDEVK 502 (552)
Q Consensus 424 ~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~-~~g~~~l~ 502 (552)
++|+.|+|++|.|+..... .+. .+++|+.|+|++|.|+... ..++..+++|+.|+|++|++. +..+..+.
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~----~f~-~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~ 148 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPR----TFD-GLKSLRLLSLHGNDISVVP----EGAFNDLSALSHLAIGANPLYCDCNMQWLS 148 (193)
T ss_dssp TTCCEEECCSSCCCBCCTT----TTT-TCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CCCCEEECCCCccCEeCHH----HhC-CCCCCCEEECCCCCCCeeC----hhhhhcCccccEEEeCCCCeecCCcCHHHH
Confidence 5555555555554432211 122 4556666666666555321 112344667777777777764 33344444
Q ss_pred HHHh
Q 008809 503 EIFK 506 (552)
Q Consensus 503 ~~l~ 506 (552)
..++
T Consensus 149 ~~~~ 152 (193)
T 2wfh_A 149 DWVK 152 (193)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.87 E-value=1.2e-09 Score=97.05 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=63.0
Q ss_pred CcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCC-CCcchHHHHHHHhhcCCCcCEEEccCC-CCCchHHHHH
Q 008809 367 ADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGND-ITVEAAPVISACVAAKQHLTKLNLAEN-ELKDDGAIQI 444 (552)
Q Consensus 367 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~d~g~~~l 444 (552)
..|+.|+++++.+++.|+..+. .+++|++|+|++|. +++.+...++..-..+++|++|+|++| .|+|.|+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCCCccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 3577777777777777766552 36777777777775 777776666542001246888888877 4888777665
Q ss_pred HHHHhhCCCCccEEEccCC-CCCHHH
Q 008809 445 SKALEQGHDQLKVVDMSSN-FIRRAG 469 (552)
Q Consensus 445 ~~~L~~~~~~L~~L~Ls~n-~i~~~g 469 (552)
+ .+++|+.|+|++| .|++.|
T Consensus 136 ~-----~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 136 H-----HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp G-----GCTTCCEEEEESCTTCCCHH
T ss_pred h-----cCCCCCEEECCCCCCCCchH
Confidence 4 5778888888887 577765
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.86 E-value=4e-10 Score=101.62 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=69.5
Q ss_pred CcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHH
Q 008809 367 ADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISK 446 (552)
Q Consensus 367 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~ 446 (552)
++|+.|++++|.++......+ ..+++|++|++++|.++...... +..+++|+.|+|++|.|+.....
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~---- 94 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVF-----DKLTQLTKLSLSQNQIQSLPDGV----FDKLTKLTILYLHENKLQSLPNG---- 94 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-----TTCTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTT----
T ss_pred CCCcEEEeCCCcccEeCHHHh-----cCcccccEEECCCCcceEeChhH----ccCCCccCEEECCCCCccccCHH----
Confidence 455555665555543211111 12456666666666665433211 23346777777777766642211
Q ss_pred HHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCCHH--HHHHHHHHHhcCc
Q 008809 447 ALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIISEE--GIDEVKEIFKNSP 509 (552)
Q Consensus 447 ~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~~~~ 509 (552)
.+. .+++|+.|++++|.|+... ...+..+++|+.|++++|+++.. .+..+...+....
T Consensus 95 ~~~-~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~ 154 (177)
T 2o6r_A 95 VFD-KLTQLKELALDTNQLKSVP----DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 154 (177)
T ss_dssp TTT-TCTTCCEEECCSSCCSCCC----TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTG
T ss_pred Hhh-CCcccCEEECcCCcceEeC----HHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCc
Confidence 122 5677777777777776421 12234577788888888887643 3666666666553
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=1.2e-10 Score=116.24 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=24.5
Q ss_pred cCccEEEeccccCCCchHHHHHHHHHHHHHhcCCCccEEEcCCCCCC
Q 008809 194 SQLKEVDLSDFVAGRPEAEALEVMAIFSAALEGSVLKSLNLSDNALG 240 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~ 240 (552)
.++++|.++++.. ...+..+ ... .++|+.|||++|++.
T Consensus 25 ~~l~~L~l~g~i~----~~~~~~l---~~~--l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 25 NSITHLTLTGKLN----AEDFRHL---RDE--FPSLKVLDISNAEIK 62 (329)
T ss_dssp HHCSEEEEEEEEC----HHHHHHH---HHS--CTTCCEEEEEEEEEC
T ss_pred CceeEEEEecccc----HHHHHHH---HHh--hccCeEEecCcceeE
Confidence 5789999987632 2222222 111 268999999999877
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.77 E-value=7.5e-10 Score=99.82 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=5.8
Q ss_pred CCCccEEEccCCCC
Q 008809 452 HDQLKVVDMSSNFI 465 (552)
Q Consensus 452 ~~~L~~L~Ls~n~i 465 (552)
+++|+.|++++|.+
T Consensus 123 l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 123 LTSLQKIWLHTNPW 136 (177)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CcccCEEEecCCCe
Confidence 33444444444433
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=2.5e-09 Score=106.64 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=57.7
Q ss_pred CCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCcc-EEEccCCCCCHHHHHHH
Q 008809 395 APLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLK-VVDMSSNFIRRAGARQL 473 (552)
Q Consensus 395 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~-~L~Ls~n~i~~~g~~~l 473 (552)
+++|+.|+|++|.++..+.. ++..|++|+.|+|..| ++.-+..+ +. .+.+|+ .|++.+ .++..+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~a----F~-~~~~L~~~l~l~~-~l~~I~~--- 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRV----FS-NCGRLAGTLELPA-SVTAIEF--- 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTT----TT-TCTTCCEEEEECT-TCCEECT---
T ss_pred cCCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHHH----hh-CChhccEEEEEcc-cceEEch---
Confidence 67888888888877765543 3555688888888887 54433222 23 678888 888887 5554332
Q ss_pred HHHHhcCCCccEEEecCCCCCH
Q 008809 474 AQVVIQKPGFKQLNIDANIISE 495 (552)
Q Consensus 474 ~~~l~~~~~L~~L~L~~N~i~~ 495 (552)
.++..|++|+.|++++|.|+.
T Consensus 291 -~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 291 -GAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp -TTTTTCTTEEEEEECSSCCCE
T ss_pred -hhhhCCccCCEEEeCCCccCc
Confidence 334558888888888887754
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.62 E-value=4.9e-09 Score=93.79 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=62.7
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHH
Q 008809 396 PLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQ 475 (552)
Q Consensus 396 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~ 475 (552)
++|+.|+|++|.|+...+.. +...++|+.|+|++|.|+.... ..+. .+++|+.|+|++|.|+... ..
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~----~~f~-~l~~L~~L~L~~N~l~~~~----~~ 96 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPA----GVFD-KLTQLTQLSLNDNQLKSIP----RG 96 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCT----TTTT-TCTTCCEEECCSSCCCCCC----TT
T ss_pred CCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccCh----hhcc-CCCCCCEEECCCCccCEeC----HH
Confidence 45666666666666543322 2334677777777776664221 1122 5677777777777776421 12
Q ss_pred HHhcCCCccEEEecCCCCCHH--HHHHHHHHHhcCcccc
Q 008809 476 VVIQKPGFKQLNIDANIISEE--GIDEVKEIFKNSPDML 512 (552)
Q Consensus 476 ~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~~~~~~l 512 (552)
++..+++|+.|+|++|+++.. .+..+...++......
T Consensus 97 ~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 97 AFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred HhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 345577888888888887654 5666777666664443
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.54 E-value=9.3e-09 Score=91.97 Aligned_cols=104 Identities=24% Similarity=0.238 Sum_probs=51.7
Q ss_pred CcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHH
Q 008809 367 ADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISK 446 (552)
Q Consensus 367 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~ 446 (552)
++|+.|+|++|.|.......+ ..+++|++|+|++|.|+...... +..+++|+.|+|++|.|+.... .
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~~L~~L~L~~N~l~~~~~----~ 96 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVF-----DRLTQLTRLDLDNNQLTVLPAGV----FDKLTQLTQLSLNDNQLKSIPR----G 96 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-----TTCTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT----T
T ss_pred CCCcEEEcCCCcCCccChhhh-----cCcccCCEEECCCCCcCccChhh----ccCCCCCCEEECCCCccCEeCH----H
Confidence 445555555555544221111 12455666666666655433211 2334666666666666653211 1
Q ss_pred HHhhCCCCccEEEccCCCCCHH--HHHHHHHHHhcCCCcc
Q 008809 447 ALEQGHDQLKVVDMSSNFIRRA--GARQLAQVVIQKPGFK 484 (552)
Q Consensus 447 ~L~~~~~~L~~L~Ls~n~i~~~--g~~~l~~~l~~~~~L~ 484 (552)
.+. .+++|+.|+|++|.+... ....+..++...+.+.
T Consensus 97 ~~~-~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 97 AFD-NLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TTT-TCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred Hhc-CCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 122 566677777777766433 2345555565555443
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.53 E-value=1.4e-08 Score=91.27 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=63.7
Q ss_pred CCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHH
Q 008809 396 PLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQ 475 (552)
Q Consensus 396 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~ 475 (552)
++|+.|+|++|.|+...+.. +..+++|+.|+|++|.|+.... ..+. .+++|+.|+|++|.|+... ..
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~----~~~~-~l~~L~~L~L~~N~l~~l~----~~ 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPT----GVFD-KLTQLTQLDLNDNHLKSIP----RG 99 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT----TTTT-TCTTCCEEECCSSCCCCCC----TT
T ss_pred CCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccCh----hHhC-CcchhhEEECCCCccceeC----HH
Confidence 45666666666665543322 3334677777777777664211 1122 5677788888888776421 12
Q ss_pred HHhcCCCccEEEecCCCCCHH--HHHHHHHHHhcCccccc
Q 008809 476 VVIQKPGFKQLNIDANIISEE--GIDEVKEIFKNSPDMLE 513 (552)
Q Consensus 476 ~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~~~~~~l~ 513 (552)
.+..+++|+.|+|++|++... .+..+...++.+...+.
T Consensus 100 ~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~ 139 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVM 139 (174)
T ss_dssp TTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEE
T ss_pred HhccccCCCEEEeCCCCcccccccHHHHHHHHHhcccccc
Confidence 355678888888888887643 46667777766655443
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.46 E-value=2.3e-08 Score=89.82 Aligned_cols=14 Identities=14% Similarity=0.031 Sum_probs=5.9
Q ss_pred CCCccEEEccCCCC
Q 008809 452 HDQLKVVDMSSNFI 465 (552)
Q Consensus 452 ~~~L~~L~Ls~n~i 465 (552)
+++|+.|+|++|.+
T Consensus 104 l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 104 LKSLTHIYLYNNPW 117 (174)
T ss_dssp CTTCSEEECCSSCB
T ss_pred ccCCCEEEeCCCCc
Confidence 33444444444433
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.17 E-value=5.8e-08 Score=99.30 Aligned_cols=202 Identities=15% Similarity=0.174 Sum_probs=89.5
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
++|+.+.+.+ .+...+. .++..|.+|+.++|.+|.++......+ .+.+|+.+.|.++ +...+ ..+
T Consensus 157 ~~L~~i~lp~-~l~~I~~----~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~-l~~I~----~~a 221 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKE----DIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT-LKEIG----SQA 221 (401)
T ss_dssp CCCCEEECCT-TCCEECS----STTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT-CCEEC----TTT
T ss_pred CCceEEEeCC-CccEehH----HHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc-hheeh----hhH
Confidence 4566666654 2222111 223445666666666665543221111 1356666666543 22211 122
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..|++|+.+++..+ +.. +........+|+.+.+..+ +..-+ ..++..|++|+.+.+.+|.+.......
T Consensus 222 F~~~~~L~~l~l~~~-l~~-----I~~~aF~~~~L~~i~lp~~-i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN-VST-----IGQEAFRESGITTVKLPNG-VTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp TTTCTTCCCEECCTT-CCE-----ECTTTTTTCCCSEEEEETT-CCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred hhCCCCCCEEecCCC-ccC-----ccccccccCCccEEEeCCC-ccEEC----hhHhhCCCCCCEEEeCCccccCCcccE
Confidence 445566666666543 221 1111111245666666332 22211 234555666666666655443111111
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIR 466 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~ 466 (552)
+.......|++|+.++|.. .++..+. .++..|++|+.|.|..| ++.-+. .++. .+ +|+.|++++|.+.
T Consensus 291 I~~~aF~~c~~L~~l~l~~-~i~~I~~----~aF~~c~~L~~l~lp~~-l~~I~~----~aF~-~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE-SIRILGQ----GLLGGNRKVTQLTIPAN-VTQINF----SAFN-NT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCCEECT----TTTTTCCSCCEEEECTT-CCEECT----TSSS-SS-CCCEEEECCSSCC
T ss_pred ECHHHhhCCccCCeEEeCC-ceEEEhh----hhhcCCCCccEEEECcc-ccEEcH----HhCC-CC-CCCEEEEcCCCCc
Confidence 1111122355666666653 3443332 12344466666666444 222111 1122 45 6666666666543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.13 E-value=6.2e-07 Score=89.81 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=32.4
Q ss_pred cCCCCCccEEEccc-CCCChHHHHHHH-HHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCCh
Q 008809 279 IPSTEKLRVLQFHN-NMTGDEGAQAIS-DVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGV 353 (552)
Q Consensus 279 l~~~~~L~~L~Ls~-n~l~~~g~~~l~-~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 353 (552)
+..+++|++|+|++ |.+.. ++ ..+..+++|+.|+|++|+|+.. .+..+..+++|+.|+|++|.|+.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~-----~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQH-----LELRDLRGLGELRNLTIVKSGLRFV----APDAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCE-----ECGGGSCSCCCCSEEECCSSCCCEE----CTTGGGSCSCCCEEECCSSCCSC
T ss_pred CCCCCCeeEEEccCCCCCCC-----cChhHhccccCCCEEECCCCcccee----CHHHhcCCcCCCEEeCCCCccce
Confidence 44445555555553 55544 22 2344455555555555555442 22234455555555555555543
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.08 E-value=3.1e-08 Score=101.27 Aligned_cols=223 Identities=16% Similarity=0.255 Sum_probs=127.5
Q ss_pred CCccEEEcCCCCCCHHHHHHHHHHHhcCCCccEEEeeCCCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHH
Q 008809 227 SVLKSLNLSDNALGEKGVRAFGALLESQSSLEELYLMNDGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDV 306 (552)
Q Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 306 (552)
++|+.+.+.++ +...+..+| .. .+|+.+.+.+ .++.... .++..|++|+.++|++|.+.. ++..
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF----~~-~~L~~i~lp~-~l~~I~~----~aF~~c~~L~~l~l~~n~l~~-----I~~~ 198 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAF----FN-STVQEIVFPS-TLEQLKE----DIFYYCYNLKKADLSKTKITK-----LPAS 198 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTT----TT-CCCCEEECCT-TCCEECS----STTTTCTTCCEEECTTSCCSE-----ECTT
T ss_pred CCccEEEeCCC-ccEECHHhc----CC-CCceEEEeCC-CccEehH----HHhhCcccCCeeecCCCcceE-----echh
Confidence 57888888766 443332223 22 3588888875 3322111 134567888888888887765 3222
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
.-.+.+|+.+.+..+ +..-+ ..++..|++|+.+++..+ ++.-+ ..++.. ++|+.+.+. +.+...+...
T Consensus 199 aF~~~~L~~l~lp~~-l~~I~----~~aF~~~~~L~~l~l~~~-l~~I~----~~aF~~-~~L~~i~lp-~~i~~I~~~a 266 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT-LKEIG----SQAFLKTSQLKTIEIPEN-VSTIG----QEAFRE-SGITTVKLP-NGVTNIASRA 266 (401)
T ss_dssp TTTTCCCSEEECCTT-CCEEC----TTTTTTCTTCCCEECCTT-CCEEC----TTTTTT-CCCSEEEEE-TTCCEECTTT
T ss_pred hEeecccCEEEeCCc-hheeh----hhHhhCCCCCCEEecCCC-ccCcc----cccccc-CCccEEEeC-CCccEEChhH
Confidence 222578888888744 33211 135667888888888765 33211 122333 678888884 3344322221
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHH-HHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVI-SACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i 465 (552)
+ ..|++|+.+++.+|.+.......+ ..++..|++|+.++|..+ ++.-+... +. .|.+|+.|+|..+ +
T Consensus 267 F-----~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~a----F~-~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 267 F-----YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGL----LG-GNRKVTQLTIPAN-V 334 (401)
T ss_dssp T-----TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTT----TT-TCCSCCEEEECTT-C
T ss_pred h-----hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhh----hc-CCCCccEEEECcc-c
Confidence 2 346788888888776541100000 123566788888888743 44333222 23 6788888888655 4
Q ss_pred CHHHHHHHHHHHhcCCCccEEEecCCCCC
Q 008809 466 RRAGARQLAQVVIQKPGFKQLNIDANIIS 494 (552)
Q Consensus 466 ~~~g~~~l~~~l~~~~~L~~L~L~~N~i~ 494 (552)
+..+.. ++..+ +|+.|++.+|.+.
T Consensus 335 ~~I~~~----aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 335 TQINFS----AFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CEECTT----SSSSS-CCCEEEECCSSCC
T ss_pred cEEcHH----hCCCC-CCCEEEEcCCCCc
Confidence 443322 34456 8888888888654
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=4.1e-06 Score=79.92 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=56.4
Q ss_pred cCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHH---H
Q 008809 393 GSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRA---G 469 (552)
Q Consensus 393 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~---g 469 (552)
..+++|+.|+|++|.|+.... +...+..+++|+.|+|++|.|++.. .+ ..+. .+ .|++|+|++|.+... .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~--l~~~~~~l~~L~~L~Ls~N~i~~~~--~l-~~l~-~l-~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSER--EL-DKIK-GL-KLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG--GTTHHHHSTTCCEEECTTSCCCSGG--GG-GGGT-TS-CCSEEECTTSTTGGGCSSH
T ss_pred hhCCCCCEEECCCCCCCCCcc--chhHHhhCCCCCEEECCCCccCCch--hh-hhcc-cC-CcceEEccCCcCccccCcc
Confidence 446788888888888776321 2222344588888888888887641 11 2222 23 888899999888641 1
Q ss_pred HHHHHHHHhcCCCccEEEe
Q 008809 470 ARQLAQVVIQKPGFKQLNI 488 (552)
Q Consensus 470 ~~~l~~~l~~~~~L~~L~L 488 (552)
.......+..+|+|+.||-
T Consensus 240 ~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHCTTCCEESS
T ss_pred hhHHHHHHHHCcccCeECC
Confidence 1333455667888888763
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.06 E-value=1.1e-06 Score=87.97 Aligned_cols=105 Identities=22% Similarity=0.213 Sum_probs=69.5
Q ss_pred cEEEcCCC-CCCHHHHHHHHHHHhcCCCccEEEeeC-CCCCHHHHHHHHHhcCCCCCccEEEcccCCCChHHHHHHHHHh
Q 008809 230 KSLNLSDN-ALGEKGVRAFGALLESQSSLEELYLMN-DGISKEAARAVCELIPSTEKLRVLQFHNNMTGDEGAQAISDVV 307 (552)
Q Consensus 230 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 307 (552)
..++++++ .|+. ++. +..+.+|+.|+|++ |.|+.... ..+..+++|+.|+|++|.|... .+..+
T Consensus 11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~----~~~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHLEL----RDLRGLGELRNLTIVKSGLRFV----APDAF 76 (347)
T ss_dssp SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEECG----GGSCSCCCCSEEECCSSCCCEE----CTTGG
T ss_pred CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCcCh----hHhccccCCCEEECCCCcccee----CHHHh
Confidence 45677776 7765 444 66667788888885 77764322 2355677888888888887751 22356
Q ss_pred hcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCCh
Q 008809 308 KHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGV 353 (552)
Q Consensus 308 ~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 353 (552)
..+++|+.|+|++|+|+. ++..+.....|+.|+|.+|.+..
T Consensus 77 ~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALES-----LSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp GSCSCCCEEECCSSCCSC-----CCSTTTCSCCCCEEECCSSCCCC
T ss_pred cCCcCCCEEeCCCCccce-----eCHHHcccCCceEEEeeCCCccC
Confidence 778888888888888765 33333333348888888887763
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.89 E-value=9.7e-06 Score=77.32 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=20.0
Q ss_pred CCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCCh
Q 008809 282 TEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGS 325 (552)
Q Consensus 282 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~ 325 (552)
+++|+.|+|++|.+.. +..++..+..+++|+.|+|++|.|..
T Consensus 169 l~~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp CTTCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCC
Confidence 3555555555555543 11122333445555555555555543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.89 E-value=0.00059 Score=69.25 Aligned_cols=127 Identities=14% Similarity=0.261 Sum_probs=70.7
Q ss_pred hcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHH
Q 008809 336 ESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPV 415 (552)
Q Consensus 336 ~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 415 (552)
..+..|+.+.+..+...-. ...+..+..++.+.+..+.+... ....+.+|+.+.+..+ ++..+.
T Consensus 250 ~~~~~l~~~~~~~~~~~i~-----~~~F~~~~~l~~~~~~~~~i~~~--------~F~~~~~L~~i~l~~~-i~~I~~-- 313 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIG-----GSLFYNCSGLKKVIYGSVIVPEK--------TFYGCSSLTEVKLLDS-VKFIGE-- 313 (394)
T ss_dssp TTCSSCCEEEECCTTCEEC-----SCTTTTCTTCCEEEECSSEECTT--------TTTTCTTCCEEEECTT-CCEECT--
T ss_pred cccccceeEEcCCCcceee-----ccccccccccceeccCceeeccc--------cccccccccccccccc-cceech--
Confidence 3455566665554432210 12344455566555554433321 1123678888888654 433222
Q ss_pred HHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCC
Q 008809 416 ISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDAN 491 (552)
Q Consensus 416 l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N 491 (552)
.++..|.+|+.++|..+ ++.-|.. ++. +|.+|+.+++..+ ++..|.. ++..|++|+.+++..+
T Consensus 314 --~aF~~c~~L~~i~lp~~-v~~I~~~----aF~-~c~~L~~i~lp~~-l~~I~~~----aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 314 --EAFESCTSLVSIDLPYL-VEEIGKR----SFR-GCTSLSNINFPLS-LRKIGAN----AFQGCINLKKVELPKR 376 (394)
T ss_dssp --TTTTTCTTCCEECCCTT-CCEECTT----TTT-TCTTCCEECCCTT-CCEECTT----TBTTCTTCCEEEEEGG
T ss_pred --hhhcCCCCCCEEEeCCc-ccEEhHH----hcc-CCCCCCEEEECcc-ccEehHH----HhhCCCCCCEEEECCC
Confidence 23566688888888754 3332222 233 7888999888776 5443322 3456888999888754
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.29 E-value=0.024 Score=57.15 Aligned_cols=131 Identities=15% Similarity=0.266 Sum_probs=59.6
Q ss_pred HhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchH
Q 008809 334 ALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAA 413 (552)
Q Consensus 334 ~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 413 (552)
++..|..|+.+.+..+...-. ..++..++.|+.+.+.. .+...+. .....|.+|+.+.|..+ ++..+.
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~-----~~aF~~c~~L~~i~l~~-~i~~I~~-----~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIG-----TGAFMNCPALQDIEFSS-RITELPE-----SVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEEC-----TTTTTTCTTCCEEECCT-TCCEECT-----TTTTTCTTCCEEECCTT-CCEECT
T ss_pred eeeecccccEEecccccceec-----CcccccccccccccCCC-cccccCc-----eeecCCCCcCEEEeCCc-ccEehH
Confidence 344566666666655432110 22445566677776643 2322111 11123567777777543 333222
Q ss_pred HHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCC
Q 008809 414 PVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANII 493 (552)
Q Consensus 414 ~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i 493 (552)
.++..|.+|+.+.|..+ ++.-|. .++. +|.+|+.+++.++.. ...++..+..|+.+.+..|.+
T Consensus 328 ----~aF~~C~~L~~i~ip~s-v~~I~~----~aF~-~C~~L~~i~~~~~~~-------~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 328 ----DAFAGCEQLERIAIPSS-VTKIPE----SAFS-NCTALNNIEYSGSRS-------QWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ----TTTTTCTTCCEEEECTT-CCBCCG----GGGT-TCTTCCEEEESSCHH-------HHHTCBCCCCC----------
T ss_pred ----hHhhCCCCCCEEEECcc-cCEEhH----hHhh-CCCCCCEEEECCcee-------ehhhhhccCCCCEEEeCCCCE
Confidence 23455577777777544 222221 1233 677777777776521 123344566677776665543
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.72 E-value=0.0036 Score=63.42 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=62.1
Q ss_pred HHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHH
Q 008809 362 ALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGA 441 (552)
Q Consensus 362 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~ 441 (552)
++..+..|+.+.+..+...- .......+..++.+.+..+.+... ++..+.+|+.+.+..+ ++.-|.
T Consensus 248 ~f~~~~~l~~~~~~~~~~~i------~~~~F~~~~~l~~~~~~~~~i~~~-------~F~~~~~L~~i~l~~~-i~~I~~ 313 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKLRI------GGSLFYNCSGLKKVIYGSVIVPEK-------TFYGCSSLTEVKLLDS-VKFIGE 313 (394)
T ss_dssp TTTTCSSCCEEEECCTTCEE------CSCTTTTCTTCCEEEECSSEECTT-------TTTTCTTCCEEEECTT-CCEECT
T ss_pred cccccccceeEEcCCCccee------eccccccccccceeccCceeeccc-------cccccccccccccccc-cceech
Confidence 34556667766665543211 001112356677766655544331 2556789999998765 332221
Q ss_pred HHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCC
Q 008809 442 IQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDAN 491 (552)
Q Consensus 442 ~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N 491 (552)
.++. .|.+|+.++|..+ ++..|.. ++..|.+|+.+++..|
T Consensus 314 ----~aF~-~c~~L~~i~lp~~-v~~I~~~----aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 314 ----EAFE-SCTSLVSIDLPYL-VEEIGKR----SFRGCTSLSNINFPLS 353 (394)
T ss_dssp ----TTTT-TCTTCCEECCCTT-CCEECTT----TTTTCTTCCEECCCTT
T ss_pred ----hhhc-CCCCCCEEEeCCc-ccEEhHH----hccCCCCCCEEEECcc
Confidence 2233 7899999999754 5443323 3456899999999876
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.28 E-value=0.15 Score=51.29 Aligned_cols=130 Identities=10% Similarity=0.151 Sum_probs=73.7
Q ss_pred hhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHH
Q 008809 307 VKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVA 386 (552)
Q Consensus 307 l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~ 386 (552)
+..|..|+.+.+..+...- -..++..|+.|+.+.+..+ +..-+ ..++..|.+|+.+.|..+ +...+...
T Consensus 261 F~~c~~L~~i~lp~~~~~I-----~~~aF~~c~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSI-----GTGAFMNCPALQDIEFSSR-ITELP----ESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp TTTCSSCCEEECCTTCCEE-----CTTTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred eeecccccEEeccccccee-----cCcccccccccccccCCCc-ccccC----ceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 5667888888886554211 0134567888888888643 32211 235677888999988754 33322111
Q ss_pred HHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCC
Q 008809 387 ITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFI 465 (552)
Q Consensus 387 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i 465 (552)
..+|.+|+.+.+..+ ++..+. .++..|++|+.+++.++... ..++. .+..|+.+.+..+.+
T Consensus 330 -----F~~C~~L~~i~ip~s-v~~I~~----~aF~~C~~L~~i~~~~~~~~-------~~~~~-~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 330 -----FAGCEQLERIAIPSS-VTKIPE----SAFSNCTALNNIEYSGSRSQ-------WNAIS-TDSGLQNLPVAPGSI 390 (394)
T ss_dssp -----TTTCTTCCEEEECTT-CCBCCG----GGGTTCTTCCEEEESSCHHH-------HHTCB-CCCCC----------
T ss_pred -----hhCCCCCCEEEECcc-cCEEhH----hHhhCCCCCCEEEECCceee-------hhhhh-ccCCCCEEEeCCCCE
Confidence 234788999998654 444332 23667789999999886421 23444 688888888877644
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.01 E-value=0.31 Score=40.43 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=23.5
Q ss_pred CccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCCCCC-HHHHHHHHHHHhcC
Q 008809 454 QLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDANIIS-EEGIDEVKEIFKNS 508 (552)
Q Consensus 454 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N~i~-~~g~~~l~~~l~~~ 508 (552)
+|+.|+|++|.|+... ..++..+++|+.|+|.+|++. +-.+..+...++..
T Consensus 32 ~l~~L~Ls~N~l~~l~----~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP----PGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83 (130)
T ss_dssp TCSEEECTTSCCSSCC----TTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred CCCEEECCCCcCCccC----hhhhhhccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence 4455555555444321 112333555666666666554 23344444444433
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=83.23 E-value=0.39 Score=39.80 Aligned_cols=17 Identities=12% Similarity=-0.079 Sum_probs=8.3
Q ss_pred cCccEEEeccccCCCch
Q 008809 194 SQLKEVDLSDFVAGRPE 210 (552)
Q Consensus 194 ~~L~~L~Ls~~~~~~~~ 210 (552)
.+|++|+|++|.+....
T Consensus 31 ~~l~~L~Ls~N~l~~l~ 47 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALP 47 (130)
T ss_dssp TTCSEEECTTSCCSSCC
T ss_pred cCCCEEECCCCcCCccC
Confidence 34555555555544433
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.43 E-value=0.11 Score=51.83 Aligned_cols=130 Identities=12% Similarity=0.151 Sum_probs=65.5
Q ss_pred hcCCCCCEEecCCCCCChHHHHHHHHHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHH
Q 008809 336 ESCTHLKKLDLRDNMFGVEAGVALSKALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPV 415 (552)
Q Consensus 336 ~~~~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 415 (552)
..+.+|+.+.+..+. ...+ ..++..+..|+.+.+..+ +...+.. ....+..|+.+.+..+ ++..+.
T Consensus 214 ~~~~~l~~i~~~~~~-~~i~----~~~f~~~~~L~~i~lp~~-v~~I~~~-----aF~~~~~l~~i~l~~~-i~~i~~-- 279 (379)
T 4h09_A 214 SYGKNLKKITITSGV-TTLG----DGAFYGMKALDEIAIPKN-VTSIGSF-----LLQNCTALKTLNFYAK-VKTVPY-- 279 (379)
T ss_dssp TTCSSCSEEECCTTC-CEEC----TTTTTTCSSCCEEEECTT-CCEECTT-----TTTTCTTCCEEEECCC-CSEECT--
T ss_pred ccccccceeeeccce-eEEc----cccccCCccceEEEcCCC-ccEeCcc-----ccceeehhcccccccc-ceeccc--
Confidence 345566666665442 1110 123455667777776544 2221111 1123566777776543 322221
Q ss_pred HHHHhhcCCCcCEEEccCCCCCchHHHHHHHHHhhCCCCccEEEccCCCCCHHHHHHHHHHHhcCCCccEEEecCC
Q 008809 416 ISACVAAKQHLTKLNLAENELKDDGAIQISKALEQGHDQLKVVDMSSNFIRRAGARQLAQVVIQKPGFKQLNIDAN 491 (552)
Q Consensus 416 l~~~l~~~~~L~~L~Ls~n~l~d~g~~~l~~~L~~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~L~~L~L~~N 491 (552)
.++..|++|+.+.+.++.++.-|.. ++. .|.+|+.+.|..+ ++..|.. ++.+|.+|+.+.+..+
T Consensus 280 --~aF~~c~~L~~i~l~~~~i~~I~~~----aF~-~c~~L~~i~lp~~-l~~I~~~----aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 280 --LLCSGCSNLTKVVMDNSAIETLEPR----VFM-DCVKLSSVTLPTA-LKTIQVY----AFKNCKALSTISYPKS 343 (379)
T ss_dssp --TTTTTCTTCCEEEECCTTCCEECTT----TTT-TCTTCCEEECCTT-CCEECTT----TTTTCTTCCCCCCCTT
T ss_pred --cccccccccccccccccccceehhh----hhc-CCCCCCEEEcCcc-ccEEHHH----HhhCCCCCCEEEECCc
Confidence 1245557777777776655433222 222 6777777777644 4333222 2344677777777544
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=74.78 E-value=0.64 Score=46.16 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=84.9
Q ss_pred CCCCccEEEcccCCCChHHHHHHHHHhhcCCCccEEEeeCCCCChHHHHHHHHHhhcCCCCCEEecCCCCCChHHHHHHH
Q 008809 281 STEKLRVLQFHNNMTGDEGAQAISDVVKHSPLLEDFRCSSTRIGSEGGTALSEALESCTHLKKLDLRDNMFGVEAGVALS 360 (552)
Q Consensus 281 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~L~ 360 (552)
.+..+..+.+....... ....+..+..|+.+.+..+- ...+ ..++..+..|+.+.+..+ ++.-+ .
T Consensus 192 ~~~~~~~~~~~~~~~~i-----~~~~f~~~~~l~~i~~~~~~-~~i~----~~~f~~~~~L~~i~lp~~-v~~I~----~ 256 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTV-----TAYGFSYGKNLKKITITSGV-TTLG----DGAFYGMKALDEIAIPKN-VTSIG----S 256 (379)
T ss_dssp TTCCCSEEECCTTCCEE-----CTTTTTTCSSCSEEECCTTC-CEEC----TTTTTTCSSCCEEEECTT-CCEEC----T
T ss_pred ccccccccccccceeEE-----eecccccccccceeeeccce-eEEc----cccccCCccceEEEcCCC-ccEeC----c
Confidence 34556666655442211 11223456677777775442 1110 124456778888888665 32211 2
Q ss_pred HHHccCCcccEEecCCCCCCchHHHHHHHHHhcCCCCccEEEccCCCCCcchHHHHHHHhhcCCCcCEEEccCCCCCchH
Q 008809 361 KALSNYADLTEVYLSYLNLEDDGTVAITNALKGSAPLLEVLELAGNDITVEAAPVISACVAAKQHLTKLNLAENELKDDG 440 (552)
Q Consensus 361 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~d~g 440 (552)
.++..+..|+.+.+..+ +...+. .....|.+|+.+.+.++.++..+. .++..|.+|+.+.|..+ ++.-|
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~-----~aF~~c~~L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPY-----LLCSGCSNLTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECT-----TTTTTCTTCCEEEECCTTCCEECT----TTTTTCTTCCEEECCTT-CCEEC
T ss_pred cccceeehhcccccccc-ceeccc-----cccccccccccccccccccceehh----hhhcCCCCCCEEEcCcc-ccEEH
Confidence 34566778888887543 332211 112346788888888777665443 23566688888888765 33222
Q ss_pred HHHHHHHHhhCCCCccEEEccCC
Q 008809 441 AIQISKALEQGHDQLKVVDMSSN 463 (552)
Q Consensus 441 ~~~l~~~L~~~~~~L~~L~Ls~n 463 (552)
. .++. +|.+|+.+.+..+
T Consensus 326 ~----~aF~-~C~~L~~i~ip~~ 343 (379)
T 4h09_A 326 V----YAFK-NCKALSTISYPKS 343 (379)
T ss_dssp T----TTTT-TCTTCCCCCCCTT
T ss_pred H----HHhh-CCCCCCEEEECCc
Confidence 2 2233 7888888888654
No 165
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=31.57 E-value=9.9 Score=31.58 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=6.8
Q ss_pred HHHHHHHhcCCCccE
Q 008809 471 RQLAQVVIQKPGFKQ 485 (552)
Q Consensus 471 ~~l~~~l~~~~~L~~ 485 (552)
..|..++.....|..
T Consensus 77 ~Dl~~AV~~~e~~dF 91 (140)
T 2byk_A 77 EHLSQVVNKNKNLEF 91 (140)
T ss_dssp HHHHHHHHTCSTTGG
T ss_pred HHHHHHHhcCchhhh
Confidence 335555554444433
No 166
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=21.93 E-value=1e+02 Score=22.73 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=32.8
Q ss_pred CChhhHHHHHHHHHhhcccc-hhhhhhccCCCHHH---HHHHHHHHHHHHhhhhhhh
Q 008809 20 PSQNTRQMLVERMRNNLTTK-SIFTQRYGVLTQEE---AEENAKKIEDVAFSSANEH 72 (552)
Q Consensus 20 ~~~~~r~~~~~r~~~~ls~~-~~~~~~~~~~~~~e---a~~~~~~~~~~~~~~~~~~ 72 (552)
.++..|..+|++++..|... +.. ...+.. -.+.|+.+|...|..|...
T Consensus 10 vt~~lR~hlv~Klv~aI~P~pdp~-----a~~d~rm~~l~~yArkvE~~~ye~A~sr 61 (81)
T 1kdx_A 10 VTQDLRSHLVHKLVQAIFPTPDPA-----ALKDRRMENLVAYAKKVEGDMYESANSR 61 (81)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSSGG-----GGGSHHHHHHHHHHHHHHHHHHTTCSSH
T ss_pred cCHHHHHHHHHHHHHHhcCCCChh-----hhhhHHHHHHHHHHHHHHHHHHHHhccH
Confidence 36899999999998887653 112 222222 3556888999999887653
Done!