BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008811
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 20 CDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAILIKKLEKLGKHAEL 73
C+ C V K L+K+ GV V +E+G+ V G DP L++ +E+ G AE+
Sbjct: 11 CNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEV 64
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 20 CDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAILIKKLEKLGKHAELWGPQK 78
C+ C +K L+ + G+ S N D+EQ ++V +V P+ +I L GK A + G K
Sbjct: 17 CENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGK 75
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 20 CDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAILIKKLEKLGKHAELWGPQK 78
C+ C +K L+ + G+ S N D+EQ +V +V P+ +I L GK A + G K
Sbjct: 16 CENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGKDAIIRGAGK 74
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 18 VDCDGCKQKVKKVLRKIDGVYSTNVD--VEQGKVTVTGNVDPAILIKKLEKLGKHAEL 73
+DC C +++ + K+ GV S V+ +EQ V+ G P IL +E+ G HA +
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 68
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 20 CDGCKQKVKKVLRKIDGVYSTNVD--VEQGKVTVTGNVDPAILIKKLEKLGKHAELWGPQ 77
C C +++ + K+ GV S V+ +EQ V+ G P IL +E+ G HA + Q
Sbjct: 14 CAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVLKQQ 73
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 20 CDGCKQKVKKVLRKIDGVYSTNVD--VEQGKVTVTGNVDPAILIKKLEKLGKHAEL 73
C C +++ + K+ GV S V+ +EQ V+ G P IL +E+ G HA +
Sbjct: 14 CAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 69
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 18 VDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVT 52
+DC CK K++ L ++ GV +V V G++TVT
Sbjct: 17 MDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 51
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 32.7 bits (73), Expect = 0.54, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 18 VDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVT 52
+DC CK K++ L ++ GV +V V G++TVT
Sbjct: 12 MDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 46
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 10 QSCVLRVN-VDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAILIKKLEKLG 68
+ V RV+ + C C K ++ +++I+GV V+ K+TVTG I+++E+ G
Sbjct: 3 EKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAG 58
Query: 69 KHAEL 73
L
Sbjct: 59 AFEHL 63
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 20 CDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAI---LIKKLEKLGKHAELWGP 76
C C +++K L KI+GV + V+ VTV N A L + ++KLG +L G
Sbjct: 85 CAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE 144
Query: 77 Q 77
Q
Sbjct: 145 Q 145
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 20 CDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAI---LIKKLEKLGKHAELWGP 76
C C +++K L KI+GV + V+ VTV N A L + ++KLG +L G
Sbjct: 14 CAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE 73
Query: 77 Q 77
Q
Sbjct: 74 Q 74
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 20 CDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAI---LIKKLEKLGKHAELWGP 76
C C +++K L KI+GV + V+ VTV N A L + ++KLG +L G
Sbjct: 85 CAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE 144
Query: 77 Q 77
Q
Sbjct: 145 Q 145
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis In The Cu(I)loaded State
Length = 80
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 20 CDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAI---LIKKLEKLGKHAELWGP 76
C C +++K L KI+GV + V+ VTV N A L + ++KLG +L G
Sbjct: 14 CAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE 73
Query: 77 Q 77
Q
Sbjct: 74 Q 74
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus
Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 18 VDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVD 56
+ C C + V+ + ++DGV + +V++E GKV V+ + D
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDAD 49
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A
Trinuclear Cu(I) Cluster
Length = 69
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 18 VDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVD 56
+ C C + V+ + ++DGV + +V++E GKV V+ + D
Sbjct: 11 MSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDAD 49
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain
Of Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 12 CVLRVN-VDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGN---VDPAILIKKLEKL 67
C ++V + C C +++ LR+ +G+YS V + GK V N + P ++ + + +L
Sbjct: 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64
Query: 68 G 68
G
Sbjct: 65 G 65
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 10 QSCVLRV-NVDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAILIKKLEK 66
Q+ L V + C C VKK L K++GV +V E+ + VT + D ++KL K
Sbjct: 3 QTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFD-DTKASVQKLTK 59
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 10 QSCVLRV-NVDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAILIKKLEK 66
Q+ L V + C C VKK + K++GV +V E + VT + D ++KL K
Sbjct: 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFD-DAKTSVQKLTK 59
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 18 VDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAILIKKLEKLGKHAE 72
+DC C + V K ++ D + VD+ KVT+T + L + G E
Sbjct: 9 MDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 63
>pdb|1FD8|A Chain A, Solution Structure Of The Cu(I) Form Of The Yeast
Metallochaperone, Atx1
Length = 73
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 16 VNVDCDGCKQKVKKVLRKID-GVYSTNVDVEQGKVTVTGNVDPAILIKKLEKLGK 69
V + C GC V KVL K++ V ++ +E+ V V + +++K++K GK
Sbjct: 11 VVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGK 65
>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
Metallochaperone, Atx1
pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
Length = 73
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 16 VNVDCDGCKQKVKKVLRKID-GVYSTNVDVEQGKVTVTGNVDPAILIKKLEKLGK 69
V + C GC V KVL K++ V ++ +E+ V V + +++K++K GK
Sbjct: 11 VVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGK 65
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 18 VDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAILIKKLEKLGKHAE 72
+ C+ C + V K ++ D + VD+ KVT+T + L + G E
Sbjct: 9 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 63
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 18 VDCDGCKQKVKKVLRKIDGVYSTNVDVEQGKVTVTGNVDPAILIKKLEKLGKHAE 72
+ C+ C + V K ++ D + VD+ KVT+T + L + G E
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,100,154
Number of Sequences: 62578
Number of extensions: 204904
Number of successful extensions: 364
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 25
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)