BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008816
(552 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBG7|SRPR_MOUSE Signal recognition particle receptor subunit alpha OS=Mus musculus
GN=Srpr PE=1 SV=1
Length = 636
Score = 312 bits (799), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 203/553 (36%), Positives = 300/553 (54%), Gaps = 72/553 (13%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAE--------ELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE ++ + + S++ KP+ ++ + G+ K E+ N
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKTK---EKAKN------ 166
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
+ RG K E + + + +G++ G EN + K ++ K
Sbjct: 167 -------NKKRGAKKEGSDGTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQK 219
Query: 224 GGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------N 272
GK D + PK+K K RVW+ +K LD++ P NG+ N
Sbjct: 220 HGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDIN 278
Query: 273 IEVEAADHGESMMDKEEVFSSDSESEEDEEVGKHNKPDAKK--TGWFSSMFQSIAGKANL 330
+ + G + D D S +DE ++ KP A K G M + + G +L
Sbjct: 279 L-IRGTGPGGQLQD------LDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSL 331
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390
+ D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+L
Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391
Query: 391 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450
V+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AA
Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 451
Query: 451 CDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNG 497
CDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A G
Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 511
Query: 498 SDVVLVDTAGRMQ 510
DVVLVDTAGRMQ
Sbjct: 512 FDVVLVDTAGRMQ 524
>sp|Q9U5L1|SRPR_DROME Signal recognition particle receptor subunit alpha homolog
OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2
Length = 614
Score = 294 bits (753), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 199/534 (37%), Positives = 289/534 (54%), Gaps = 55/534 (10%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ ++IFT+GG++LW GN+ S I++LIR +LEER+ A + Y+ A ++
Sbjct: 1 MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLA--VQ 56
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY-DPKRTDYSDFDEMFRQLRKE 119
+ NEL LV+ A++Q+++ L Y+D LA M+ +F E Y D + D DFD +R++
Sbjct: 57 FKLDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 116
Query: 120 AEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLE 179
AE + + K+ + + N +K S ++ DD R
Sbjct: 117 AEEASAKQVKAPKTMRSYNESQK-------------SKKTVASMIQDDKKPVEKR----- 158
Query: 180 NGHSNVGNVEIEESRVTGVANGKEN-TSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNP 238
V I+E+ + T S + + K +KLR K T S
Sbjct: 159 --------VNIQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREKL-TPTKKTSPSDSKS 209
Query: 239 DPKKKITKKNRVWD---DSPPESKLDFT--DPAGGNGSNIEVEAADHGESMMDKEEVFSS 293
+K KK RVWD +S + LD + P NI E + ++ +V S
Sbjct: 210 SKPEKAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESE 269
Query: 294 DSESEEDE----EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTK 349
D ED E + + K G S F+ I G + ADL+PAL+ ++D L++K
Sbjct: 270 DEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISK 329
Query: 350 NVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAA 409
NVA EIA KLC+SVAASL+GK++ +F I+S V+ A+ E+LVRIL+P+R IDI+RD +
Sbjct: 330 NVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALES 389
Query: 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL 469
K +PY ++F GVNGVGKSTNLAK+ +WL+++ +V++AACDTFR+GAVEQLRTH R L
Sbjct: 390 KRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHL 449
Query: 470 Q-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
V ++EKGY KD A +A EAI+ A DVVLVDTAGRMQ
Sbjct: 450 NALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQ 503
>sp|Q3MHE8|SRPR_BOVIN Signal recognition particle receptor subunit alpha OS=Bos taurus
GN=SRPR PE=2 SV=1
Length = 639
Score = 293 bits (750), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 200/557 (35%), Positives = 298/557 (53%), Gaps = 77/557 (13%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAE--------ELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE ++ + + S++ KP+ ++ + G+ K + G
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAKK 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-- 221
DG + E +G+ G EN ++SK +++R
Sbjct: 176 EGSDGPLATSKAAPAEK---------------SGLPVGPENGE------ELSKEEQIRRK 214
Query: 222 -----NKGGKKTDTVVSKGSNPDPKKKITKKNRVW--DDSPPESKLDFTDPAGGNGSNIE 274
K G+ + + PK+K K RVW S + LD++ P +N
Sbjct: 215 REEFIQKHGRGMEKSSKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPT----TNGA 270
Query: 275 VEAADHGESMMDK-----EEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAG 326
EAA + + + ++ D S +DE +++ KP A K G M + + G
Sbjct: 271 PEAAPPEDINLIRGTGPGRQLQDLDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVG 330
Query: 327 KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAM 386
+L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A+
Sbjct: 331 SKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQAL 390
Query: 387 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446
+E+LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+++WLL++ SV
Sbjct: 391 QESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSV 450
Query: 447 MMAACDTFRSGAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEA 493
++AACDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A
Sbjct: 451 LIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFA 510
Query: 494 TRNGSDVVLVDTAGRMQ 510
G DVVLVDTAGRMQ
Sbjct: 511 RNQGFDVVLVDTAGRMQ 527
>sp|P08240|SRPR_HUMAN Signal recognition particle receptor subunit alpha OS=Homo sapiens
GN=SRPR PE=1 SV=2
Length = 638
Score = 289 bits (740), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 201/553 (36%), Positives = 297/553 (53%), Gaps = 70/553 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSD 171
F +L +EAE +S ++ P K + + K R + G + +
Sbjct: 116 DFLRLLREAE-------ESSKIRAPTTMKKFEDSEKAKKPV-RSMIETRGEKPKEKAKNS 167
Query: 172 NMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-------NKG 224
+G K E + + + +G+ G EN ++SK + +R K
Sbjct: 168 KKKGAKKEGSDGPLATSKPVPAEKSGLPVGPEN------GVELSKEELIRRKREEFIQKH 221
Query: 225 GKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------NI 273
G+ + + PK+K K RVW+ +K LD++ P NG+ N+
Sbjct: 222 GRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDINL 280
Query: 274 EVEAADHGESMMDKEEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAGKANL 330
+ G + D D S +DE +++ KP A K G M + + G +L
Sbjct: 281 -IRGTGSGGQLQDL------DCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSL 333
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390
+ D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393
Query: 391 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450
V+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453
Query: 451 CDTFRSGAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNG 497
CDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A G
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513
Query: 498 SDVVLVDTAGRMQ 510
DVVLVDTAGRMQ
Sbjct: 514 FDVVLVDTAGRMQ 526
>sp|P06625|SRPR_CANFA Signal recognition particle receptor subunit alpha OS=Canis
familiaris GN=SRPR PE=2 SV=2
Length = 638
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 201/563 (35%), Positives = 301/563 (53%), Gaps = 90/563 (15%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS------------- 107
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEMFRQLRKEAEARA----EELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
DF + R+ + ++ RA ++ + S++ KP+ ++ + G+ K + +
Sbjct: 116 DFLRLLREREESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
++D L G + V E+S G+ G EN ++SK + +R K
Sbjct: 176 SSDG---------PLATGKA----VPAEKS---GLPAGPEN------GVELSKEELIRRK 213
Query: 224 ----------GGKKTDTVVSKGSNPD-PKKKITKKNRVWDDSPPESK--LDFTDPAGGNG 270
G +K+ SK + D PK+K K RVW +K LD++ P
Sbjct: 214 REEFIQKHGRGLEKS----SKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPTTNGA 269
Query: 271 SNIE-------VEAADHGESMMDKEEVFSSDSESEEDEEVGKH-NKPDAKK--TGWFSSM 320
+ + G + D D S +DEE ++ +KP A K G M
Sbjct: 270 PDAAPPEDINLIRGTGPGGQLQDL------DCSSSDDEETAQNASKPSATKGTLGGMFGM 323
Query: 321 FQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISS 380
+ + G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S
Sbjct: 324 LKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTS 383
Query: 381 IVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440
V+ A++E+LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+++WLL
Sbjct: 384 TVKQALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLL 443
Query: 441 QHKVSVMMAACDTFRSGAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAK 487
++ SV++AACDTFR+GAVE +RTH RRL V +FEKGY KD A +A
Sbjct: 444 ENGFSVLIAACDTFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEKGYGKDAAGIAM 503
Query: 488 EAIQEATRNGSDVVLVDTAGRMQ 510
EAI A G DVVLVDTAGRMQ
Sbjct: 504 EAIAFARNQGFDVVLVDTAGRMQ 526
>sp|Q54ZR7|SRPR_DICDI Signal recognition particle receptor subunit alpha OS=Dictyostelium
discoideum GN=srpr PE=3 SV=1
Length = 615
Score = 228 bits (582), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 141/200 (70%), Gaps = 1/200 (0%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
AK F F + G +DK DLEP L K L KNVA ++A+K+ +S+ LEGK
Sbjct: 304 AKPVSGFMKYFNVLTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGK 363
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
KLA+F ++S+V+ ME+ + RILTP+R+IDILR+V A K +R PY +VF GVNGVGKST
Sbjct: 364 KLATFQGVTSVVKQQMEDTITRILTPKRNIDILREVQAVKGKR-PYSIVFSGVNGVGKST 422
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490
NLAKV YWL + M+AACDTFRSGA+EQL+THA RL V +FE+GY KD A VA++AI
Sbjct: 423 NLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHLFERGYSKDAASVAQDAI 482
Query: 491 QEATRNGSDVVLVDTAGRMQ 510
A G DVVL+DT GRMQ
Sbjct: 483 AFAKDTGYDVVLIDTTGRMQ 502
>sp|O43032|SRPR_SCHPO Signal recognition particle receptor subunit alpha homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp101 PE=3 SV=1
Length = 547
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/192 (47%), Positives = 126/192 (65%), Gaps = 8/192 (4%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
I GK L + DL P LK +++ L KNVA IA +LCESV ASL KK+ SF + + V
Sbjct: 251 IGGKY-LKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVN 309
Query: 384 AAMEEALVRILTPRRSIDILRDVHAA-KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH 442
A + L +ILTP S+D+L + + K + +PY + +GVNGVGKST LAK+AYWLL +
Sbjct: 310 KAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSN 369
Query: 443 KVSVMMAACDTFRSGAVEQLRTHARRLQ------VPIFEKGYEKDPAIVAKEAIQEATRN 496
+++AACDTFRSGA+EQL H + LQ + +F +GY KD + V K A++ A +N
Sbjct: 370 NFRILVAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQN 429
Query: 497 GSDVVLVDTAGR 508
DV+L+DTAGR
Sbjct: 430 SFDVILIDTAGR 441
Score = 39.3 bits (90), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLL-EERSGLASFNYDSAGAAYTL 59
M++ I +GG++LW K+ + + + L L E+R+ + +D YT+
Sbjct: 1 MIDLFAIVNKGGIVLW--KKTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDR----YTM 54
Query: 60 KWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKE 119
++ + +VFV V+Q + + Y LL F ++ K D RQ+ E
Sbjct: 55 QYQEATQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED--------RQVPNE 106
Query: 120 AEA 122
AE
Sbjct: 107 AEV 109
>sp|P32916|SRPR_YEAST Signal recognition particle receptor subunit alpha homolog
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRP101 PE=1 SV=2
Length = 621
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 179/333 (53%), Gaps = 49/333 (14%)
Query: 218 QKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPE--SKLDFTDPAGGNGSNIEV 275
+KLR+ GKK T N +K + + D+ E +KLDF+ N S + +
Sbjct: 189 KKLRDTKGKKQST-----GNVGSGRKWGRDGGMLDEMNHEDAAKLDFSSSNSHNSSQVAL 243
Query: 276 EAADHGESMMDKEEVFS------SDSESEEDEEVGKHNKPDAKKTGWFSSMF----QSIA 325
++ + +S D+ E D S +E+ N +AK +G+ S+ F + +
Sbjct: 244 DSTINKDSFGDRTEGGDFLIKEIDDLLSSHKDEITSGN--EAKNSGYVSTAFGFLQKHVL 301
Query: 326 GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAA 385
G ++++DL+ L+ L +L+TKNVA E A+ L + V+ L G K A++T + + + +
Sbjct: 302 GNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARES 361
Query: 386 MEEALVRILTPRRSIDILRDVHAAKEQRK------PYVVVFVGVNGVGKSTNLAKVAYWL 439
+ +AL +ILTP S+D+LR++ + + ++ PYV VGVNGVGKSTNL+K+A+WL
Sbjct: 362 LTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAFWL 421
Query: 440 LQHKVSVMMAACDTFRSGAVEQLRTHARRLQ----------------------VPIFEKG 477
LQ+ V++ ACDTFRSGAVEQLR H L V +FE G
Sbjct: 422 LQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVELFEAG 481
Query: 478 YEKDPAI--VAKEAIQEATRNGSDVVLVDTAGR 508
Y + +AK+AI+ + D+VL+DTAGR
Sbjct: 482 YGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGR 514
>sp|P27414|FTSY_SULAC Signal recognition particle receptor FtsY OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=ftsY PE=3 SV=1
Length = 369
Score = 135 bits (340), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 127/210 (60%), Gaps = 8/210 (3%)
Query: 302 EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCE 361
+ G+ NK + K++ + +++I + DL ++ L+ +L+ +V+ E+ EK+ E
Sbjct: 68 QTGQENKQENKRSFFDFLKYKTIK------EDDLNDVIEELRFQLLDSDVSYEVTEKILE 121
Query: 362 SVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFV 421
+ +L GKK++ + IV +++++ ILT + D++ + ++ +KP+V++F
Sbjct: 122 DLKNNLIGKKVSRREEVEEIVINTLKKSITEILTKNQKTDLIEKIRSSG--KKPFVIIFF 179
Query: 422 GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 481
GVNGVGK+T +AKV L ++ +S ++AA DTFR+ A EQL HA +L+V + Y D
Sbjct: 180 GVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQLIRGKYGAD 239
Query: 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQV 511
PA VA +AI A DVVL+DTAGRM +
Sbjct: 240 PASVAFDAISFAKSRNIDVVLIDTAGRMHI 269
>sp|Q57739|FTSY_METJA Signal recognition particle receptor FtsY OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=ftsY PE=3 SV=1
Length = 409
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393
D+E L+ L+ L+ +VA E+ EKL E++ L G+K++ + I A++ A+ I
Sbjct: 122 DIEDVLEELEIALLEADVALEVVEKLIENIKNELVGRKISPDDNVEEITINAVKNAIKNI 181
Query: 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453
L+ + IDI + K + KP V+VFVG+NG GK+T +AK+AY L Q SV++AA DT
Sbjct: 182 LSQEK-IDIEEIIKKNKAEGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDT 240
Query: 454 FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508
FR+GA+EQL HA+ + V + + D A V +AIQ A G DVVL DTAGR
Sbjct: 241 FRAGAIEQLEQHAKNVGVKVIKHKPGADSAAVIYDAIQHAKARGIDVVLADTAGR 295
>sp|Q8TIN7|FTSY_METAC Signal recognition particle receptor FtsY OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=ftsY PE=3 SV=1
Length = 417
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 330 LDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEG--KKLASFTRISSIVQAAME 387
LD DLE L L+ L+ ++A ++E + ESV L G K++ S T IV+AA++
Sbjct: 140 LDNKDLEEPLWELEMGLLESDLALSVSEAIVESVKNQLTGTTKRIGSNT--GEIVEAALK 197
Query: 388 EALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM 447
+A++ +++ + D V K + KP +VFVG+NG GK+T+++K+ LL+ SV+
Sbjct: 198 KAILEVVSAN-TFDFDEYV---KNREKPVHIVFVGINGTGKTTSISKITNRLLKSGYSVV 253
Query: 448 MAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507
+AA DTFR+GA++QL HA RL V + + DPA V +A+Q A + D VL DTAG
Sbjct: 254 LAAGDTFRAGAIDQLGIHANRLGVKMIKHQAGADPAAVIYDAVQYAKAHKIDFVLSDTAG 313
Query: 508 RMQ 510
RM
Sbjct: 314 RMH 316
>sp|D4GYW6|FTSY_HALVD Signal recognition particle receptor FtsY OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=ftsY PE=3 SV=1
Length = 456
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 110/215 (51%), Gaps = 11/215 (5%)
Query: 297 SEEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIA 356
+EEDE+ D+ G GK +++ DLE L L+ L+ +V ++A
Sbjct: 151 TEEDED-------DSSGPGRLRRAAAFATGKVVIEEEDLEDPLWELEMALLQSDVEMQVA 203
Query: 357 EKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 416
E++ E++ L G+ +V A+ +AL +++ + D + + E KP
Sbjct: 204 EEILETIREKLIGETRKQVESTGQLVSEALHDALYEVISVGQ-FDFDQRI---AEADKPV 259
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
++F G+NGVGK+T +AK+A + + S ++A DT+R+GA EQ+R HA L +
Sbjct: 260 TLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLANGDTYRAGANEQIREHAEALDKKLIAH 319
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQV 511
DPA V + ++ A + D+VL DTAGR+
Sbjct: 320 EQGGDPAAVIYDGVEYAEAHDIDIVLGDTAGRLHT 354
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 113/205 (55%), Gaps = 22/205 (10%)
Query: 320 MFQSIAGKANLDKADLEPALKALK--DRLMTKNVAEEIAEKLCESVAASLEGKKLASFTR 377
MF ++A + LE A K L+ D++ N+ E + E +AA + + + F
Sbjct: 1 MFDALADR-------LEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGF-- 51
Query: 378 ISSIVQAAMEEALVRILTP-RRSIDILRD----------VHAAKEQRKPYVVVFVGVNGV 426
I + Q A+ ++ + P ++ I I+ D V A+ ++ P V++ G+ G
Sbjct: 52 IKDVEQKALGADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGT 111
Query: 427 GKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 486
GK+T AK+A +L + K S +M A D +R A++QL+T +++ VP+F+ G + +P +A
Sbjct: 112 GKTTATAKLALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEIA 171
Query: 487 KEAIQEATRNGSDVVLVDTAGRMQV 511
++ +++A G D VL+DTAGR+Q+
Sbjct: 172 RQGVEKAKELGVDTVLIDTAGRLQI 196
>sp|Q9HJ93|FTSY_THEAC Signal recognition particle receptor FtsY OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=ftsY PE=3 SV=1
Length = 288
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 11/165 (6%)
Query: 351 VAEEIAEKLCESVAASLEGKKLASFTR-----ISSIVQAAMEEALVRILTPRRSIDILRD 405
VA+EI KL E+ + + LAS R +++ + + + + P D+L
Sbjct: 23 VADEIPLKLVEADVSLEAAEDLASLVRNKLKEDTTLDPNEVLSSSILEMMPEYKFDVL-- 80
Query: 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH 465
+KP+VV+F+G+NG GK+T + K A++L ++ SV++AA DTFR+GA+EQ+
Sbjct: 81 ----NVNKKPFVVLFLGINGTGKTTTIGKFAHYLKRNGKSVVIAAADTFRAGAIEQISLI 136
Query: 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
R + DP+ VA +AI+ A D VL+DTAGRM
Sbjct: 137 GREAGTEVIRHDRGSDPSSVAFDAIEHARARNIDYVLIDTAGRMN 181
>sp|P44870|FTSY_HAEIN Signal recognition particle receptor FtsY OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsY PE=3
SV=1
Length = 414
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 401 DILRDVHAAKE---QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG 457
DIL V E +KPYV++ VGVNGVGK+T + K+A SVM+AA DTFR+
Sbjct: 192 DILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAA 251
Query: 458 AVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
AVEQL+ R +P+ + D A V +A+Q A D+++ DTAGR+Q
Sbjct: 252 AVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQ 304
>sp|Q726P7|FTSY_DESVH Signal recognition particle receptor FtsY OS=Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ftsY
PE=3 SV=1
Length = 488
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 63/96 (65%)
Query: 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474
P VV+ +GVNGVGK+T +AK+AY V++AA DTFR+ A+EQL A+R+ +
Sbjct: 280 PEVVLLIGVNGVGKTTTIAKLAYRAQLQGRKVLIAAGDTFRAAAIEQLEIWAKRVGAGFY 339
Query: 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
K DPA VA EA+ +A G D++LVDTAGR+
Sbjct: 340 AKTAGADPAAVAYEAMDKAVSEGYDLLLVDTAGRLH 375
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 109/211 (51%), Gaps = 8/211 (3%)
Query: 326 GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAA 385
G+ + +++++ ALK ++ L+ +V + ++ V G ++ S R
Sbjct: 18 GQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKV 77
Query: 386 MEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS 445
+ + LV+++ V A+ + P V++ G+ G GK+T AK+A L + S
Sbjct: 78 VYDELVQVMGETH-------VPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRS 130
Query: 446 VMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT 505
++ A D +R A++QL T +++ VP+FE G + +P +A++ +++A + G D V+VDT
Sbjct: 131 TLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQEGIDTVIVDT 190
Query: 506 AGRMQVIIEYYLFLLHIYLHTVCEHFVNIIT 536
AGR+Q+ E L + + H V ++
Sbjct: 191 AGRLQIDTEMMEELAQVK-EAIAPHEVLLVV 220
>sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic
OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
Length = 564
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 106/198 (53%), Gaps = 7/198 (3%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLA 373
TG + + + G+ L K ++ ++ ++ L+ +V+ + + +SV+ G +
Sbjct: 82 TGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVI 141
Query: 374 SFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLA 433
+ + + + LV+++ S ++ AK P V++ G+ GVGK+T A
Sbjct: 142 RGVKPDQQLVKIVHDELVKLMGGEVS-----ELQFAKS--GPTVILLAGLQGVGKTTVCA 194
Query: 434 KVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493
K+A +L + S M+ A D +R A++QL ++ VP++ G + PA +AK+ ++EA
Sbjct: 195 KLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEA 254
Query: 494 TRNGSDVVLVDTAGRMQV 511
+N DVV++DTAGR+Q+
Sbjct: 255 KKNNVDVVIMDTAGRLQI 272
>sp|P51835|FTSY_BACSU Signal recognition particle receptor FtsY OS=Bacillus subtilis
(strain 168) GN=ftsY PE=1 SV=2
Length = 329
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 63/94 (67%)
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
V++ VGVNGVGK+T + K+A+ + Q SV++AA DTFR+GA+EQL R VP+ ++
Sbjct: 122 VILLVGVNGVGKTTTIGKLAHKMKQEGKSVVLAAGDTFRAGAIEQLEVWGERTGVPVIKQ 181
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
DPA V +A+ A +DV++ DTAGR+Q
Sbjct: 182 TAGSDPAAVIYDAVHAAKARNADVLICDTAGRLQ 215
>sp|P10121|FTSY_ECOLI Signal recognition particle receptor FtsY OS=Escherichia coli
(strain K12) GN=ftsY PE=1 SV=1
Length = 497
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 64/100 (64%)
Query: 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 470
E + P+V++ VGVNGVGK+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 348
Query: 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
+P+ + D A V +AIQ A DV++ DTAGR+Q
Sbjct: 349 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQ 388
>sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54
PE=1 SV=2
Length = 504
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 108/193 (55%), Gaps = 9/193 (4%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGR 508
++++VDT+GR
Sbjct: 182 ENFEIIIVDTSGR 194
>sp|Q5R4R6|SRP54_PONAB Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54
PE=2 SV=1
Length = 504
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 108/193 (55%), Gaps = 9/193 (4%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGR 508
++++VDT+GR
Sbjct: 182 ENFEIIIVDTSGR 194
>sp|Q4R965|SRP54_MACFA Signal recognition particle 54 kDa protein OS=Macaca fascicularis
GN=SRP54 PE=2 SV=1
Length = 504
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 108/193 (55%), Gaps = 9/193 (4%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGR 508
++++VDT+GR
Sbjct: 182 ENFEIIIVDTSGR 194
>sp|P61011|SRP54_HUMAN Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54
PE=1 SV=1
Length = 504
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 108/193 (55%), Gaps = 9/193 (4%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGR 508
++++VDT+GR
Sbjct: 182 ENFEIIIVDTSGR 194
>sp|P61010|SRP54_CANFA Signal recognition particle 54 kDa protein OS=Canis familiaris
GN=SRP54 PE=1 SV=1
Length = 504
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 108/193 (55%), Gaps = 9/193 (4%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGR 508
++++VDT+GR
Sbjct: 182 ENFEIIIVDTSGR 194
>sp|Q2T9U1|SRP54_BOVIN Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54
PE=2 SV=1
Length = 504
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 108/193 (55%), Gaps = 9/193 (4%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGR 508
++++VDT+GR
Sbjct: 182 ENFEIIIVDTSGR 194
>sp|Q8CWX8|FTSY_STRMU Signal recognition particle receptor FtsY OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ftsY PE=3
SV=1
Length = 498
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 60/94 (63%)
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
V++FVGVNGVGK+T++ K+AY VM+ A DTFR+GAV QL RR+ VP+
Sbjct: 296 VMLFVGVNGVGKTTSIGKLAYKYKHQGKKVMLVAADTFRAGAVAQLAEWGRRVDVPVVTG 355
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
DPA V + ++ A D++++DTAGR+Q
Sbjct: 356 PKNADPASVVYDGVERAVAADVDILMIDTAGRLQ 389
>sp|P57137|FTSY_BUCAI Signal recognition particle receptor FtsY OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=ftsY PE=3
SV=1
Length = 378
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 10/173 (5%)
Query: 346 LMTKNVAEEIAEKLCESVAASLEGKKLASFTRI-SSIVQAAMEEAL-----VRILTPRRS 399
++K + E + E+L E + + G + + RI S++++ E L + L R+
Sbjct: 102 FLSKKIDEVLFEELEEKMLLADIG--INTTNRIISNLIKDVNREDLKNSEKLYFLLKRKM 159
Query: 400 IDILRDVHAAKE--QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG 457
+IL+ V E P+V++ VGVNG GK+T +AK+A S+M+AA DTFR+
Sbjct: 160 FNILKKVEIPLEISSHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIMLAAADTFRAA 219
Query: 458 AVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
+EQL+T + +P+ + DPA V +A++ A DV+++DTAGR+
Sbjct: 220 GIEQLQTLGKLNNIPVIAQRSGSDPAAVIFDAVKSAKSKKIDVLIIDTAGRLH 272
>sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa protein OS=Rattus norvegicus
GN=Srp54 PE=2 SV=1
Length = 504
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 108/193 (55%), Gaps = 9/193 (4%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGR 508
++++VDT+GR
Sbjct: 182 ENFEIIIVDTSGR 194
>sp|Q8KA77|FTSY_BUCAP Signal recognition particle receptor FtsY OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=ftsY PE=3 SV=1
Length = 351
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 11/169 (6%)
Query: 342 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSID 401
L+D ++ ++ +++ + K+L + ++ +++ M L R+ P +
Sbjct: 87 LEDTMLLSDIGVHTTDQIISKLINDATHKELKNPEKVYFLLKEHMYSILNRVEKPLKI-- 144
Query: 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 461
P+V++ VG+NG GK+T ++K+A SVM+AA DTFR+ +EQ
Sbjct: 145 ---------SNHTPFVILVVGINGTGKTTTVSKLAKKYKLAGKSVMLAAADTFRAAGIEQ 195
Query: 462 LRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
L+ +R +P+ + DPA VA +A++ A DV+++DTAGR+
Sbjct: 196 LQILGKRNNIPVISQSSGSDPASVAFDAVKSAISKKIDVLIIDTAGRLH 244
>sp|P75362|FTSY_MYCPN Signal recognition particle receptor FtsY OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=ftsY PE=3 SV=1
Length = 348
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 97/172 (56%), Gaps = 10/172 (5%)
Query: 340 KALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRS 399
++L + L+ ++ A K+C+++ L+ ++++ I I+ +++ +V +
Sbjct: 69 ESLFEELVLLDIGYHAATKICDAIVQELKLQRVSDPQLIQEII---VDKLIVYYIQ---- 121
Query: 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV 459
D L + E K V +FVGVNGVGK+T+LAK+A L + V+M A DTFR+GAV
Sbjct: 122 -DKLFETDLTVEANKTNVYLFVGVNGVGKTTSLAKLADQLTKQNKRVLMVAGDTFRAGAV 180
Query: 460 EQLRTHARRLQVPI-FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
QL A+R+ I E+ PA++ + +Q+ +N D VL DT+GR+Q
Sbjct: 181 AQLAEWAQRIGCDIVLPNPKEETPAVIFR-GVQQGIQNEYDFVLCDTSGRLQ 231
>sp|P37106|SR541_ARATH Signal recognition particle 54 kDa protein 1 OS=Arabidopsis
thaliana GN=SRP-54A PE=2 SV=1
Length = 479
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 7/194 (3%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G + Q + +D+ L L + L+ +V+ + EK+ ++ + LA+
Sbjct: 8 GRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I++ A+ + L R+L P + A ++ KP VV+FVG+ G GK+T K
Sbjct: 68 GHNKRLIIEQAIFKELCRMLDPGKP-------AFAPKKAKPSVVMFVGLQGAGKTTTCTK 120
Query: 435 VAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494
AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 121 YAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFK 180
Query: 495 RNGSDVVLVDTAGR 508
+ D+++VDT+GR
Sbjct: 181 KEKCDLIIVDTSGR 194
>sp|O67066|FTSY_AQUAE Signal recognition particle receptor FtsY OS=Aquifex aeolicus
(strain VF5) GN=ftsY PE=3 SV=1
Length = 461
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%)
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
V++FVGVNG GK+T + K+A+ L Q V++ A DTFR+ A+EQL A+R V I +K
Sbjct: 262 VLLFVGVNGSGKTTTIGKLAHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDIVKK 321
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509
DP V E +++A G +VVLVDTAGR+
Sbjct: 322 EEGSDPGAVVYEGMKKAKEEGYEVVLVDTAGRL 354
>sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa protein OS=Geodia cydonium
GN=SRP54 PE=2 SV=1
Length = 499
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 94/174 (54%), Gaps = 7/174 (4%)
Query: 335 LEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394
L+ LK + L+ +V ++ KL ++V A+++ + + + I+Q ++ L ++L
Sbjct: 27 LQAMLKEICTALLEADVNVKLVGKLRQNVRAAIDFEDMGAGLSKRRIIQTSVFNELCKLL 86
Query: 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454
P + H K V++FVG+ G GK+T K+AY + + DTF
Sbjct: 87 DPGVPV-----WHPTKGHSN--VIMFVGLQGSGKTTTCTKLAYHYQKKGWKTCLVCADTF 139
Query: 455 RSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508
R+GA +QL+ +A + +VP + E DP ++A+E +++ + +V++VDT+GR
Sbjct: 140 RAGAFDQLKQNATKARVPFYGSYTEMDPVVIAQEGVEKFKEDSFEVIIVDTSGR 193
>sp|P49971|SR541_SOLLC Signal recognition particle 54 kDa protein 1 OS=Solanum
lycopersicum PE=3 SV=1
Length = 496
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 8/199 (4%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
A+ G S Q ++ +D+ L L + L+ +V ++ + ++ + +
Sbjct: 4 AQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIVNLE 63
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
LA+ I+Q A+ L +IL P + L+ + KP VV+FVG+ G GK+T
Sbjct: 64 DLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLK-------KGKPSVVMFVGLQGSGKTT 116
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY-EKDPAIVAKEA 489
K AY + + DTFR+GA +QL+ +A + ++P + Y E DP +A +
Sbjct: 117 TCTKYAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDG 176
Query: 490 IQEATRNGSDVVLVDTAGR 508
++ + D+++VDT+GR
Sbjct: 177 VETFKKENCDLIIVDTSGR 195
>sp|P21565|SRP54_SCHPO Signal recognition particle 54 kDa protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp54 PE=1 SV=1
Length = 522
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 95/184 (51%), Gaps = 7/184 (3%)
Query: 339 LKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRR 398
LK + L+ +V + ++L ++ + L IVQ A+ + L ++ P+
Sbjct: 32 LKNICTALLETDVNVRLVQELRSNIKKKINVSTLPQGINGKRIVQKAVFDELCSLVDPKV 91
Query: 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA 458
D K+ R P V++ VG+ G GK+T +K+A + + + A DTFR+GA
Sbjct: 92 ------DAFTPKKGR-PSVIMMVGLQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGA 144
Query: 459 VEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLF 518
+QL+ +A + +VP F E DP ++AKE + + + DV++VDT+GR Q E +
Sbjct: 145 FDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRHQQEQELFAE 204
Query: 519 LLHI 522
++ I
Sbjct: 205 MVEI 208
>sp|Q54431|SRP54_STRMU Signal recognition particle protein OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ffh PE=3 SV=3
Length = 516
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 8/199 (4%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLA 373
T +F+++ GK L + D++ K ++ L+ +VA + ++ + V G ++
Sbjct: 7 TERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVGHEVI 66
Query: 374 SFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLA 433
S + + E L +L + K + P +++ VG+ G GK+T
Sbjct: 67 DTLDPSQQIIKIVNEELTAVLGSETA-------EIEKSSKIPTIIMMVGLQGAGKTTFAG 119
Query: 434 KVAYWLLQHK-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 492
K+A L++ + +M A D +R A++QL+T +++ VP+F+ G E + + + +
Sbjct: 120 KLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQ 179
Query: 493 ATRNGSDVVLVDTAGRMQV 511
A N +D VL+DTAGR+Q+
Sbjct: 180 AKENRNDYVLIDTAGRLQI 198
>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum
lycopersicum PE=2 SV=1
Length = 499
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 94/194 (48%), Gaps = 7/194 (3%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G S Q ++ +D+ L L + L+ +V ++ + ++ + LA+
Sbjct: 8 GSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I+Q A+ L +IL P + ++ KP +V+FVG+ G GK+T K
Sbjct: 68 GHNKRRIIQQAVFNELCKILDPGKP-------SFTPKKGKPSIVMFVGLQGSGKTTTCTK 120
Query: 435 VAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494
AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A + ++
Sbjct: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFK 180
Query: 495 RNGSDVVLVDTAGR 508
+ D+++VDT+GR
Sbjct: 181 KENCDLIIVDTSGR 194
>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare
GN=SRP54-2 PE=2 SV=1
Length = 497
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 7/198 (3%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
A+ G S ++ +D+ L L + L+ +V ++ + ++ + +
Sbjct: 4 AQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIVNLE 63
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
LA+ T I+Q A+ L +L P + ++ KP VV+FVG+ G GK+T
Sbjct: 64 TLAAGTNKRRIIQQAVFTELCNMLDPGKP-------AFTPKKGKPSVVMFVGLQGSGKTT 116
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490
K AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 117 TCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGL 176
Query: 491 QEATRNGSDVVLVDTAGR 508
+ + SD++++DT+GR
Sbjct: 177 ERFRKENSDLIIIDTSGR 194
>sp|P49968|SR541_HORVU Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare
GN=SRP54-1 PE=2 SV=1
Length = 497
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 7/198 (3%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
A+ G S ++ +D+ L L + L+ +V ++ + ++ + +
Sbjct: 4 AQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIVNLE 63
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
LA+ T I+Q A+ L +L P + ++ KP VV+FVG+ G GK+T
Sbjct: 64 TLAAGTNKRRIIQQAVFTELCNMLDPGKP-------AFTTKKGKPSVVMFVGLQGSGKTT 116
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490
K AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 117 TCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGL 176
Query: 491 QEATRNGSDVVLVDTAGR 508
+ + SD++++DT+GR
Sbjct: 177 ERFRKENSDLIIIDTSGR 194
>sp|A9CHH2|FTSY_AGRT5 Signal recognition particle receptor FtsY OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=ftsY PE=3 SV=1
Length = 478
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 24/229 (10%)
Query: 291 FSSDSESEEDEEVGKHNKPD---------AKKTGWFSSMFQSIAGKANLDKADLEPALKA 341
FSS E EE V K A+ + ++ ++ K LD E L
Sbjct: 158 FSSAREREEPVPVAPQVKLTWFQRLRAGLARTSSQLTTQISALFTKRKLD----EDTLDE 213
Query: 342 LKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSID 401
L+D L+ ++ E A ++ ++++ GK + S ++ I+ + + L + P +D
Sbjct: 214 LEDLLIQSDLGVETAMRITGALSSERYGKDV-SGEDVARIMAGEITKVLKPVAKPLE-LD 271
Query: 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ 461
+ KP+V++ VGVNG GK+T + K+A L + VM+AA DTFR+ A+EQ
Sbjct: 272 L---------SHKPHVILVVGVNGTGKTTTIGKLAAKLSGSGLKVMLAAGDTFRAAAIEQ 322
Query: 462 LRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
L+ A R D A +A +A ++A SDV+++DTAGR+Q
Sbjct: 323 LKIWADRTGSEFIGTKLGADAAGLAYDAYEQARAQKSDVLIIDTAGRLQ 371
>sp|P57010|FTSY_NEIMA Signal recognition particle receptor FtsY OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=ftsY PE=3
SV=1
Length = 421
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 16/192 (8%)
Query: 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVA--ASLEGKKLASFTR 377
M +S+AG + D E + L+ L+T ++ E E L + V SL+G K + R
Sbjct: 137 MAKSLAGVFGGGQID-EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELR 195
Query: 378 ISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437
A++EAL ++ P +L E ++P+V++ G+NG GK+T++ K+A
Sbjct: 196 ------GALKEALYDLIKPLEKPLVL------PETKEPFVIMLAGINGAGKTTSIGKLAK 243
Query: 438 WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG 497
+ SV++AA DTFR+ A EQL+ R V + + D A V +A+Q A G
Sbjct: 244 YFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQ-TTGDSAAVCFDAVQAAKARG 302
Query: 498 SDVVLVDTAGRM 509
D+VL DTAGR+
Sbjct: 303 IDIVLADTAGRL 314
>sp|P57011|FTSY_NEIMB Signal recognition particle receptor FtsY OS=Neisseria meningitidis
serogroup B (strain MC58) GN=ftsY PE=3 SV=1
Length = 421
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 16/192 (8%)
Query: 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVA--ASLEGKKLASFTR 377
M +S+AG + D E + L+ L+T ++ E E L + V SL+G K + R
Sbjct: 137 MAKSLAGVFGGGQID-EDLYEELETVLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELR 195
Query: 378 ISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437
A++EAL ++ P +L E ++P+V++ G+NG GK+T++ K+A
Sbjct: 196 ------GALKEALYDLIKPLEKPLVL------PETKEPFVIMLAGINGAGKTTSIGKLAK 243
Query: 438 WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG 497
+ SV++AA DTFR+ A EQL+ R V + + D A V +A+Q A G
Sbjct: 244 YFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQ-TTGDSAAVCFDAVQAAKARG 302
Query: 498 SDVVLVDTAGRM 509
D+VL DTAGR+
Sbjct: 303 IDIVLADTAGRL 314
>sp|Q9RS67|FTSY_DEIRA Signal recognition particle receptor FtsY OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=ftsY PE=3 SV=1
Length = 317
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 103/214 (48%), Gaps = 30/214 (14%)
Query: 316 WF-------SSMFQSIAGKANLDKADLEPA------LKALKDRLMTKNVAEEIAEKLCES 362
WF S Q I+G A +++ A ++ L+ L+ +V E++ E
Sbjct: 3 WFDRLRQGLSKTRQQISGTAGPLDQEVQTAFTRIDNIEDLEYALIAADVGRAATEEIIED 62
Query: 363 VAASLEGKKLASFTRISSIVQAAMEEALVRILTPR------RSIDILRDVHAAKEQRKPY 416
+ + EG+ +Q A+ AL L P R + DV +K K +
Sbjct: 63 IRKNGEGR-----------LQDALMRALTLQLEPNARRAQFRELGFSPDVSRSKVDPKGH 111
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
VV+ +GVNGVGK+T +AK+ + ++ SVM AA DTFR+ A QL RL VP+ +
Sbjct: 112 VVMVIGVNGVGKTTTIAKLGQYYMERGQSVMFAAGDTFRAAAGTQLGVWGERLGVPVIQG 171
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
DPA VA +A G+D++ VDTAGR+
Sbjct: 172 VDGGDPAAVAFDAAGARKARGTDLLFVDTAGRLH 205
>sp|Q75K18|SRP54_DICDI Signal recognition particle 54 kDa protein OS=Dictyostelium
discoideum GN=srp54 PE=1 SV=1
Length = 542
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
SS +S+ +++ + LK + + L +V+ + ++ +++ ++ ++A+
Sbjct: 10 LSSALRSLNETTIVNEDTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKIKLDQMAAGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA 436
I++ + + L+R+L P + + + K +V+FVG+ G GK+T++ K+A
Sbjct: 70 NKRKIIKQVVFDELIRLLDP--GVPLWKPTKG-----KSNIVMFVGLQGAGKTTSVTKLA 122
Query: 437 YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496
Y+ + S + DTFR+GA +Q+R +A + ++ + EKDP +VA+ + ++
Sbjct: 123 YFYKKKGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSETEKDPVVVARTGVDIFKKD 182
Query: 497 GSDVVLVDTAGR 508
G+++++VDT+GR
Sbjct: 183 GTEIIIVDTSGR 194
>sp|P47539|FTSY_MYCGE Signal recognition particle receptor FtsY OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=ftsY PE=3
SV=1
Length = 346
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 346 LMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRD 405
L+ +V A K+C+++ ++ ++ F I ++ +++ +V + D L D
Sbjct: 75 LVLLDVGYHAANKICDAIIEQIKLNRITDFQLIKELI---IDQIIVYYIQ-----DKLFD 126
Query: 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH 465
+ V +FVGVNGVGK+T LAK+A + ++ V++ A DTFR+GA+EQL
Sbjct: 127 TDLIVKPNFTNVYLFVGVNGVGKTTTLAKIADFFIKQNKRVLLVAGDTFRAGAIEQLNQW 186
Query: 466 ARRLQVPI-FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510
A+ L I E+ PA++ + +++ + D VL DT+GR+Q
Sbjct: 187 AKLLNCDIVLPNPKEQTPAVIFR-GVKKGIDDKYDFVLCDTSGRLQ 231
>sp|O30391|FTSY_NEIMC Signal recognition particle receptor FtsY OS=Neisseria meningitidis
serogroup C GN=ftsY PE=3 SV=1
Length = 421
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 16/192 (8%)
Query: 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVA--ASLEGKKLASFTR 377
M +S+AG + D E + L+ L+T ++ E E L + V SL+G K + R
Sbjct: 137 MAKSLAGVFGGGQID-EDLYEELETVLITSDMDMEATEYLMKDVRDRVSLKGLKDGNELR 195
Query: 378 ISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437
A++EAL ++ P +L E ++P+V++ G+NG GK+T++ K+A
Sbjct: 196 ------GALKEALYDLIKPLEKPLVL------PETKEPFVIMLAGINGAGKTTSIGKLAK 243
Query: 438 WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG 497
+ SV++AA DTFR+ A EQL+ R V + + D A V +A+Q A G
Sbjct: 244 YFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQ-TTGDSAAVCFDAVQAAKARG 302
Query: 498 SDVVLVDTAGRM 509
D+VL DTAGR+
Sbjct: 303 IDIVLADTAGRL 314
>sp|P49967|SR543_ARATH Signal recognition particle 54 kDa protein 3 OS=Arabidopsis
thaliana GN=SRP-54C PE=2 SV=2
Length = 495
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 96/194 (49%), Gaps = 7/194 (3%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G + Q ++ +D+ L L + L+ +V+ + +++ ++ + + LA+
Sbjct: 8 GRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I++ A+ L ++L P + A ++ K VV+FVG+ G GK+T K
Sbjct: 68 GHNKRRIIEQAIFSELCKMLDPGKP-------AFAPKKAKASVVMFVGLQGAGKTTTCTK 120
Query: 435 VAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494
AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 121 YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFK 180
Query: 495 RNGSDVVLVDTAGR 508
+ D+++VDT+GR
Sbjct: 181 KENCDLIIVDTSGR 194
>sp|P56005|SRP54_HELPY Signal recognition particle protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ffh PE=3 SV=1
Length = 448
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 24/187 (12%)
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQA----AM 386
D+ L+ AL LK L+ +V ++A +L KK+ S T+++ I + A+
Sbjct: 21 DEKALDRALDELKKTLLKNDVHHKVARELL---------KKVESQTKLNGIGKQQFLDAL 71
Query: 387 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446
E++L+ IL+ + S Q P VV+ G+ G GK+T AK+A++L V
Sbjct: 72 EKSLLEILSAKGSSGF------TFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKV 125
Query: 447 MMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI--VAKEAIQEATRNGSDVVLVD 504
++ ACD R AVEQL+ ++ V +F YE++ ++ +A A++ A DV+LVD
Sbjct: 126 LLCACDLQRLAAVEQLKVLGEQVGVEVF---YEENKSVKEIASNALKRAKEAQFDVLLVD 182
Query: 505 TAGRMQV 511
+AGR+ +
Sbjct: 183 SAGRLAI 189
>sp|P20424|SRP54_YEAST Signal recognition particle subunit SRP54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP54 PE=1
SV=2
Length = 541
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 63/98 (64%)
Query: 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 470
++RK +++FVG+ G GK+T+ K+A + + V + DTFR+GA +QL+ +A R +
Sbjct: 105 KKRKTNIIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRAR 164
Query: 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508
+P + E DPA VA+E I + + D+++VDT+GR
Sbjct: 165 IPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGR 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,588,945
Number of Sequences: 539616
Number of extensions: 8788247
Number of successful extensions: 42468
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 41291
Number of HSP's gapped (non-prelim): 1187
length of query: 552
length of database: 191,569,459
effective HSP length: 123
effective length of query: 429
effective length of database: 125,196,691
effective search space: 53709380439
effective search space used: 53709380439
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)