Query 008816
Match_columns 552
No_of_seqs 461 out of 3076
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 16:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0781 Signal recognition par 100.0 5.3E-87 1.2E-91 696.6 36.7 483 1-532 1-501 (587)
2 PF04086 SRP-alpha_N: Signal r 100.0 1.2E-39 2.6E-44 332.9 5.3 115 27-145 1-124 (279)
3 COG0552 FtsY Signal recognitio 100.0 3.5E-34 7.5E-39 293.0 23.5 192 329-527 59-251 (340)
4 COG0541 Ffh Signal recognition 100.0 3.5E-33 7.5E-38 293.2 26.9 216 313-535 5-220 (451)
5 TIGR01425 SRP54_euk signal rec 100.0 4.4E-30 9.5E-35 274.7 28.0 216 313-535 5-220 (429)
6 PRK14974 cell division protein 100.0 1E-28 2.2E-33 258.0 27.7 216 312-535 45-260 (336)
7 PRK10867 signal recognition pa 100.0 9.5E-29 2.1E-33 265.7 27.4 216 313-535 5-221 (433)
8 KOG0780 Signal recognition par 100.0 3.6E-28 7.9E-33 250.3 24.0 214 314-534 7-220 (483)
9 TIGR00959 ffh signal recogniti 100.0 9.9E-28 2.2E-32 257.7 27.7 216 313-535 4-220 (428)
10 PRK00771 signal recognition pa 100.0 1.7E-26 3.7E-31 248.8 28.0 211 315-535 3-213 (437)
11 PRK10416 signal recognition pa 99.9 4.1E-26 9E-31 237.3 25.3 191 320-525 34-224 (318)
12 TIGR00064 ftsY signal recognit 99.9 8.8E-25 1.9E-29 222.9 25.5 183 334-527 2-184 (272)
13 PF00448 SRP54: SRP54-type pro 99.9 5.4E-22 1.2E-26 193.3 16.5 121 415-535 1-121 (196)
14 PRK14723 flhF flagellar biosyn 99.9 3.7E-20 8E-25 209.3 23.1 176 336-535 124-301 (767)
15 PRK11889 flhF flagellar biosyn 99.9 1E-19 2.2E-24 191.9 24.0 173 337-528 178-351 (436)
16 PRK12724 flagellar biosynthesi 99.8 2.4E-19 5.2E-24 191.1 23.6 182 327-525 145-327 (432)
17 PRK12723 flagellar biosynthesi 99.8 3.7E-19 8E-24 189.4 23.4 172 336-526 108-283 (388)
18 PRK12726 flagellar biosynthesi 99.8 2.2E-19 4.8E-24 188.8 21.1 170 340-527 145-315 (407)
19 PRK06995 flhF flagellar biosyn 99.8 4.1E-19 8.8E-24 193.2 22.0 186 313-525 175-362 (484)
20 PRK05703 flhF flagellar biosyn 99.8 9.6E-19 2.1E-23 188.8 23.2 170 331-524 155-326 (424)
21 COG1419 FlhF Flagellar GTP-bin 99.8 2.1E-18 4.6E-23 181.7 19.0 116 412-535 202-319 (407)
22 PRK14722 flhF flagellar biosyn 99.8 7.3E-18 1.6E-22 178.4 21.9 181 334-535 71-253 (374)
23 PRK14721 flhF flagellar biosyn 99.8 8.6E-17 1.9E-21 172.6 22.1 169 333-526 128-298 (420)
24 TIGR03499 FlhF flagellar biosy 99.7 7.6E-17 1.7E-21 165.5 19.7 150 334-507 131-282 (282)
25 PRK12727 flagellar biosynthesi 99.7 2.2E-16 4.8E-21 172.2 22.0 191 333-549 288-480 (559)
26 PRK06731 flhF flagellar biosyn 99.7 2.9E-16 6.3E-21 160.0 18.5 177 332-528 8-185 (270)
27 COG4555 NatA ABC-type Na+ tran 99.6 4.2E-15 9E-20 143.4 12.7 148 399-549 14-202 (245)
28 cd03115 SRP The signal recogni 99.6 1.8E-14 3.9E-19 136.5 14.9 120 416-535 1-120 (173)
29 COG4586 ABC-type uncharacteriz 99.6 1.5E-14 3.2E-19 145.0 13.1 163 384-549 20-226 (325)
30 COG1126 GlnQ ABC-type polar am 99.5 4.2E-14 9E-19 137.9 12.5 124 399-525 14-181 (240)
31 COG1120 FepC ABC-type cobalami 99.5 2.5E-14 5.5E-19 144.2 11.3 126 399-526 14-185 (258)
32 COG1136 SalX ABC-type antimicr 99.5 7.6E-13 1.6E-17 131.2 13.9 122 400-523 18-186 (226)
33 COG1131 CcmA ABC-type multidru 99.5 4.4E-13 9.6E-18 138.4 12.7 145 400-547 18-204 (293)
34 cd03216 ABC_Carb_Monos_I This 99.4 1.3E-12 2.9E-17 123.3 13.5 104 401-514 14-117 (163)
35 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 2.8E-13 6.2E-18 136.2 9.1 112 401-514 18-174 (254)
36 COG3839 MalK ABC-type sugar tr 99.4 5E-13 1.1E-17 139.7 10.7 140 402-546 18-200 (338)
37 cd03214 ABC_Iron-Siderophores_ 99.4 1.7E-12 3.7E-17 124.2 12.7 120 401-523 13-140 (180)
38 COG1124 DppF ABC-type dipeptid 99.4 2E-12 4.3E-17 128.3 13.0 125 401-527 21-189 (252)
39 PRK13537 nodulation ABC transp 99.4 1.9E-12 4E-17 134.5 12.7 147 400-549 20-207 (306)
40 PRK13536 nodulation factor exp 99.4 1.9E-12 4.1E-17 136.4 12.7 146 400-548 54-240 (340)
41 COG1116 TauB ABC-type nitrate/ 99.4 2E-12 4.4E-17 128.9 11.9 111 400-512 16-163 (248)
42 COG4152 ABC-type uncharacteriz 99.4 2.8E-12 6E-17 127.1 12.1 148 400-550 15-200 (300)
43 COG1127 Ttg2A ABC-type transpo 99.4 2.4E-12 5.3E-17 127.4 11.6 121 399-523 20-188 (263)
44 COG0410 LivF ABC-type branched 99.4 1.9E-12 4.2E-17 127.5 10.4 123 399-524 15-180 (237)
45 cd03246 ABCC_Protease_Secretio 99.4 7.2E-12 1.6E-16 119.1 14.0 106 401-514 16-131 (173)
46 COG1117 PstB ABC-type phosphat 99.4 6.3E-13 1.4E-17 129.5 6.6 147 399-547 19-227 (253)
47 TIGR01188 drrA daunorubicin re 99.4 3.5E-12 7.6E-17 132.0 12.4 112 401-514 7-159 (302)
48 cd03228 ABCC_MRP_Like The MRP 99.4 5.2E-12 1.1E-16 119.9 12.5 114 401-523 16-139 (171)
49 cd03259 ABC_Carb_Solutes_like 99.4 4.7E-12 1E-16 123.9 12.6 112 401-514 14-165 (213)
50 cd03226 ABC_cobalt_CbiO_domain 99.4 5.6E-12 1.2E-16 122.8 12.8 120 401-523 14-169 (205)
51 COG1135 AbcC ABC-type metal io 99.4 5.2E-12 1.1E-16 129.0 12.8 148 399-549 18-211 (339)
52 TIGR02314 ABC_MetN D-methionin 99.4 4.9E-12 1.1E-16 133.4 13.0 114 400-515 18-176 (343)
53 cd03301 ABC_MalK_N The N-termi 99.4 6E-12 1.3E-16 123.1 12.5 114 401-516 14-167 (213)
54 TIGR02673 FtsE cell division A 99.4 6.3E-12 1.4E-16 123.0 12.5 113 401-515 16-173 (214)
55 TIGR00960 3a0501s02 Type II (G 99.4 7.9E-12 1.7E-16 122.6 13.2 113 401-515 17-174 (216)
56 TIGR01166 cbiO cobalt transpor 99.4 9E-12 2E-16 119.9 13.4 113 401-515 6-163 (190)
57 cd03293 ABC_NrtD_SsuB_transpor 99.4 6.6E-12 1.4E-16 123.6 12.7 113 401-515 18-167 (220)
58 cd03215 ABC_Carb_Monos_II This 99.3 2.5E-12 5.4E-17 123.3 8.9 115 402-522 15-146 (182)
59 TIGR03608 L_ocin_972_ABC putat 99.3 1.3E-11 2.7E-16 120.1 13.9 135 401-538 12-193 (206)
60 cd03225 ABC_cobalt_CbiO_domain 99.3 1.3E-11 2.8E-16 120.6 13.8 119 401-522 15-176 (211)
61 COG2884 FtsE Predicted ATPase 99.3 9.6E-12 2.1E-16 119.3 12.3 112 400-514 15-172 (223)
62 TIGR03265 PhnT2 putative 2-ami 99.3 7E-12 1.5E-16 132.8 12.7 112 400-513 17-168 (353)
63 cd03231 ABC_CcmA_heme_exporter 99.3 1.4E-11 3E-16 120.0 13.8 112 401-514 14-160 (201)
64 PRK13538 cytochrome c biogenes 99.3 1.4E-11 3E-16 120.1 13.7 119 401-522 15-171 (204)
65 COG3842 PotA ABC-type spermidi 99.3 3.5E-12 7.6E-17 134.0 10.0 123 399-523 17-183 (352)
66 cd03265 ABC_DrrA DrrA is the A 99.3 9.6E-12 2.1E-16 122.5 12.5 119 401-522 14-173 (220)
67 PRK11650 ugpC glycerol-3-phosp 99.3 7.6E-12 1.6E-16 132.7 12.6 111 400-512 17-167 (356)
68 cd03262 ABC_HisP_GlnQ_permease 99.3 1.1E-11 2.3E-16 121.2 12.7 112 401-514 14-170 (213)
69 PRK14250 phosphate ABC transpo 99.3 1.3E-11 2.8E-16 123.5 13.4 112 401-514 17-166 (241)
70 cd03269 ABC_putative_ATPase Th 99.3 1.1E-11 2.3E-16 121.2 12.5 112 401-514 14-163 (210)
71 cd03261 ABC_Org_Solvent_Resist 99.3 1E-11 2.2E-16 123.5 12.6 112 401-514 14-171 (235)
72 cd03292 ABC_FtsE_transporter F 99.3 1.4E-11 3.1E-16 120.4 13.4 113 401-515 15-172 (214)
73 TIGR01288 nodI ATP-binding ABC 99.3 8.5E-12 1.8E-16 129.2 12.5 112 401-514 18-170 (303)
74 PRK11248 tauB taurine transpor 99.3 1E-11 2.2E-16 125.6 12.7 119 401-522 15-170 (255)
75 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.3 1.2E-11 2.5E-16 121.5 12.7 135 401-538 18-200 (218)
76 cd03263 ABC_subfamily_A The AB 99.3 1.1E-11 2.3E-16 121.9 12.5 114 400-515 15-169 (220)
77 PRK11153 metN DL-methionine tr 99.3 9.5E-12 2.1E-16 131.2 12.7 113 400-514 18-175 (343)
78 cd03218 ABC_YhbG The ABC trans 99.3 1.5E-11 3.3E-16 121.7 13.5 112 401-514 14-168 (232)
79 cd03222 ABC_RNaseL_inhibitor T 99.3 1E-11 2.2E-16 119.3 11.7 93 401-514 14-106 (177)
80 cd03295 ABC_OpuCA_Osmoprotecti 99.3 1.2E-11 2.7E-16 123.5 12.7 112 401-514 15-170 (242)
81 COG1122 CbiO ABC-type cobalt t 99.3 6.3E-12 1.4E-16 126.0 10.5 127 400-528 17-187 (235)
82 cd03247 ABCC_cytochrome_bd The 99.3 1.7E-11 3.7E-16 117.0 13.1 107 401-514 16-133 (178)
83 PRK11247 ssuB aliphatic sulfon 99.3 1.3E-11 2.7E-16 125.2 12.8 112 401-514 26-168 (257)
84 KOG0058 Peptide exporter, ABC 99.3 6.9E-12 1.5E-16 139.7 11.8 112 399-512 480-637 (716)
85 cd03229 ABC_Class3 This class 99.3 1.2E-11 2.6E-16 118.2 11.9 108 401-514 14-135 (178)
86 cd03230 ABC_DR_subfamily_A Thi 99.3 1.3E-11 2.7E-16 117.5 11.9 106 401-515 14-131 (173)
87 cd03235 ABC_Metallic_Cations A 99.3 1.6E-11 3.5E-16 120.1 12.9 119 401-522 13-174 (213)
88 cd03258 ABC_MetN_methionine_tr 99.3 1.5E-11 3.2E-16 122.1 12.7 111 401-513 19-174 (233)
89 PRK11000 maltose/maltodextrin 99.3 1.1E-11 2.4E-16 132.0 12.5 112 401-514 17-168 (369)
90 cd03238 ABC_UvrA The excision 99.3 2.7E-11 5.9E-16 116.3 13.9 133 399-538 7-148 (176)
91 cd03266 ABC_NatA_sodium_export 99.3 1.8E-11 3.9E-16 120.1 12.9 112 401-514 19-171 (218)
92 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.3 1.1E-11 2.4E-16 114.8 10.7 100 401-523 14-113 (144)
93 PRK10908 cell division protein 99.3 1.6E-11 3.4E-16 121.1 12.3 112 401-514 16-172 (222)
94 TIGR03522 GldA_ABC_ATP gliding 99.3 1.3E-11 2.8E-16 127.8 12.3 146 400-549 15-201 (301)
95 PRK11432 fbpC ferric transport 99.3 1.4E-11 3.1E-16 130.3 12.7 118 401-521 20-177 (351)
96 COG3638 ABC-type phosphate/pho 99.3 2E-11 4.4E-16 120.6 12.7 124 398-524 15-195 (258)
97 PRK13637 cbiO cobalt transport 99.3 2E-11 4.3E-16 125.6 13.3 112 401-514 21-179 (287)
98 COG4598 HisP ABC-type histidin 99.3 3.3E-11 7.2E-16 114.8 13.6 141 389-535 11-208 (256)
99 cd03267 ABC_NatA_like Similar 99.3 2.4E-11 5.2E-16 121.3 13.4 121 400-523 34-196 (236)
100 cd03268 ABC_BcrA_bacitracin_re 99.3 1.7E-11 3.7E-16 119.6 12.0 113 401-515 14-162 (208)
101 cd03233 ABC_PDR_domain1 The pl 99.3 2.2E-11 4.8E-16 118.8 12.8 112 399-515 19-154 (202)
102 cd03296 ABC_CysA_sulfate_impor 99.3 2E-11 4.3E-16 121.8 12.7 112 401-514 16-171 (239)
103 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 2E-11 4.4E-16 121.5 12.7 112 401-514 15-167 (236)
104 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 2.2E-11 4.7E-16 120.7 12.6 113 400-514 35-177 (224)
105 cd03294 ABC_Pro_Gly_Bertaine T 99.3 3.2E-11 6.9E-16 122.8 14.1 113 400-514 37-195 (269)
106 PRK13540 cytochrome c biogenes 99.3 3.8E-11 8.2E-16 116.7 13.8 119 401-522 15-169 (200)
107 TIGR02315 ABC_phnC phosphonate 99.3 2.6E-11 5.6E-16 120.9 13.0 51 401-453 16-66 (243)
108 TIGR02211 LolD_lipo_ex lipopro 99.3 3.2E-11 6.9E-16 118.6 13.4 113 401-515 19-177 (221)
109 PRK13543 cytochrome c biogenes 99.3 3.1E-11 6.7E-16 118.6 13.2 145 401-548 25-205 (214)
110 COG1125 OpuBA ABC-type proline 99.3 1.7E-11 3.8E-16 122.2 11.4 111 400-512 14-168 (309)
111 PRK13652 cbiO cobalt transport 99.3 2.7E-11 5.8E-16 123.9 13.2 112 401-514 18-172 (277)
112 PRK10584 putative ABC transpor 99.3 3.7E-11 8.1E-16 118.8 13.7 120 401-523 24-189 (228)
113 cd03219 ABC_Mj1267_LivG_branch 99.3 3.5E-11 7.5E-16 119.5 13.5 112 401-514 14-178 (236)
114 TIGR01189 ccmA heme ABC export 99.3 4E-11 8.6E-16 116.3 13.5 120 401-523 14-170 (198)
115 cd03256 ABC_PhnC_transporter A 99.3 3.1E-11 6.8E-16 120.1 13.1 112 401-514 15-179 (241)
116 COG0411 LivG ABC-type branched 99.3 1.1E-11 2.4E-16 123.1 9.6 54 399-454 16-69 (250)
117 TIGR01184 ntrCD nitrate transp 99.3 2.9E-11 6.2E-16 120.3 12.7 110 403-514 1-149 (230)
118 PRK11629 lolD lipoprotein tran 99.3 3.9E-11 8.4E-16 119.3 13.7 120 401-523 23-188 (233)
119 PRK09536 btuD corrinoid ABC tr 99.3 2.7E-11 5.8E-16 130.3 13.3 113 400-514 16-174 (402)
120 COG2274 SunT ABC-type bacterio 99.3 1.7E-11 3.6E-16 139.9 12.3 125 400-526 486-656 (709)
121 PRK10247 putative ABC transpor 99.3 6.1E-11 1.3E-15 117.5 14.7 120 401-523 21-180 (225)
122 PRK13647 cbiO cobalt transport 99.3 4.1E-11 9E-16 122.4 13.8 113 401-515 19-174 (274)
123 TIGR02770 nickel_nikD nickel i 99.3 3.2E-11 6.8E-16 119.8 12.6 111 402-514 1-160 (230)
124 PRK10851 sulfate/thiosulfate t 99.3 2.9E-11 6.4E-16 128.1 13.0 111 401-513 16-170 (353)
125 cd03213 ABCG_EPDR ABCG transpo 99.3 5.1E-11 1.1E-15 115.5 13.7 106 400-514 22-146 (194)
126 PRK09452 potA putrescine/sperm 99.3 2.7E-11 5.8E-16 129.3 12.7 111 401-513 28-178 (375)
127 PRK13539 cytochrome c biogenes 99.3 5E-11 1.1E-15 116.6 13.5 111 401-513 16-161 (207)
128 PRK13650 cbiO cobalt transport 99.3 4.7E-11 1E-15 122.3 13.9 112 401-514 21-175 (279)
129 PRK13644 cbiO cobalt transport 99.3 4.3E-11 9.4E-16 122.3 13.6 113 401-515 16-172 (274)
130 TIGR01186 proV glycine betaine 99.3 2.9E-11 6.2E-16 128.5 12.7 111 401-513 7-163 (363)
131 cd03224 ABC_TM1139_LivF_branch 99.3 3.3E-11 7.1E-16 118.5 12.2 112 401-514 14-167 (222)
132 PRK15112 antimicrobial peptide 99.3 3.7E-11 8E-16 122.2 13.0 118 401-521 27-190 (267)
133 cd03260 ABC_PstB_phosphate_tra 99.3 6.4E-11 1.4E-15 117.1 14.3 113 401-515 14-177 (227)
134 TIGR03410 urea_trans_UrtE urea 99.3 3.1E-11 6.8E-16 119.5 12.0 120 401-523 14-174 (230)
135 PRK13634 cbiO cobalt transport 99.3 4.1E-11 8.8E-16 123.5 13.2 114 401-516 21-182 (290)
136 cd03223 ABCD_peroxisomal_ALDP 99.3 5.9E-11 1.3E-15 112.4 13.2 112 401-523 15-134 (166)
137 PRK11308 dppF dipeptide transp 99.3 4.2E-11 9.2E-16 125.6 13.4 114 400-515 28-190 (327)
138 cd03217 ABC_FeS_Assembly ABC-t 99.3 6.3E-11 1.4E-15 115.4 13.7 112 401-514 14-139 (200)
139 PRK10895 lipopolysaccharide AB 99.3 5.1E-11 1.1E-15 118.9 13.3 112 401-514 17-172 (241)
140 PRK10418 nikD nickel transport 99.3 5.6E-11 1.2E-15 119.8 13.8 112 401-514 17-175 (254)
141 PRK11607 potG putrescine trans 99.3 3.4E-11 7.5E-16 128.6 12.8 111 401-513 33-183 (377)
142 TIGR02769 nickel_nikE nickel i 99.3 4.9E-11 1.1E-15 121.1 13.3 113 400-514 24-185 (265)
143 TIGR03258 PhnT 2-aminoethylpho 99.3 3.3E-11 7.1E-16 128.1 12.5 118 401-521 19-178 (362)
144 PRK13638 cbiO cobalt transport 99.3 4.7E-11 1E-15 121.6 13.1 112 401-514 15-171 (271)
145 cd03253 ABCC_ATM1_transporter 99.3 4E-11 8.7E-16 119.1 12.3 112 401-514 15-172 (236)
146 PRK13635 cbiO cobalt transport 99.3 5.7E-11 1.2E-15 121.7 13.7 112 401-514 21-175 (279)
147 TIGR02868 CydC thiol reductant 99.3 2.6E-11 5.6E-16 134.5 12.0 134 401-537 349-527 (529)
148 PRK13651 cobalt transporter AT 99.3 6E-11 1.3E-15 123.3 14.0 48 401-450 21-68 (305)
149 cd03299 ABC_ModC_like Archeal 99.3 4.6E-11 1E-15 119.1 12.6 111 402-514 14-164 (235)
150 COG1134 TagH ABC-type polysacc 99.3 7.6E-11 1.6E-15 117.2 13.9 133 386-524 23-192 (249)
151 PRK10575 iron-hydroxamate tran 99.3 4.3E-11 9.3E-16 121.5 12.6 113 401-515 25-183 (265)
152 PRK11831 putative ABC transpor 99.3 4.7E-11 1E-15 121.5 12.9 112 401-514 21-178 (269)
153 PRK13646 cbiO cobalt transport 99.3 2.9E-11 6.3E-16 124.3 11.4 112 401-514 21-180 (286)
154 PRK11300 livG leucine/isoleuci 99.3 4.1E-11 8.8E-16 120.5 12.3 51 401-453 19-69 (255)
155 cd03298 ABC_ThiQ_thiamine_tran 99.3 5.6E-11 1.2E-15 116.2 12.9 110 405-516 16-165 (211)
156 PRK09493 glnQ glutamine ABC tr 99.3 6.2E-11 1.3E-15 118.3 13.4 112 401-514 15-171 (240)
157 PRK13641 cbiO cobalt transport 99.3 6.8E-11 1.5E-15 121.6 14.0 112 401-514 21-180 (287)
158 PRK11022 dppD dipeptide transp 99.3 4.6E-11 1E-15 125.2 13.0 122 400-523 20-197 (326)
159 cd03257 ABC_NikE_OppD_transpor 99.3 5.7E-11 1.2E-15 117.1 13.0 120 401-523 19-188 (228)
160 TIGR02324 CP_lyasePhnL phospho 99.3 7.4E-11 1.6E-15 116.4 13.7 114 400-515 21-185 (224)
161 PRK13632 cbiO cobalt transport 99.3 7E-11 1.5E-15 120.4 14.0 112 401-514 23-177 (271)
162 TIGR01978 sufC FeS assembly AT 99.2 8.6E-11 1.9E-15 117.1 14.1 112 401-514 14-179 (243)
163 cd03244 ABCC_MRP_domain2 Domai 99.2 5.5E-11 1.2E-15 116.9 12.6 119 401-522 18-181 (221)
164 PRK13631 cbiO cobalt transport 99.2 8.4E-11 1.8E-15 123.0 14.6 112 401-514 40-211 (320)
165 PRK13548 hmuV hemin importer A 99.2 6.2E-11 1.3E-15 119.9 13.2 112 401-514 16-175 (258)
166 TIGR03005 ectoine_ehuA ectoine 99.2 5.4E-11 1.2E-15 119.6 12.6 112 401-514 14-181 (252)
167 cd03300 ABC_PotA_N PotA is an 99.2 6.9E-11 1.5E-15 117.5 13.2 112 401-514 14-165 (232)
168 TIGR00972 3a0107s01c2 phosphat 99.2 9.2E-11 2E-15 117.6 14.2 112 401-514 15-179 (247)
169 cd03245 ABCC_bacteriocin_expor 99.2 6.1E-11 1.3E-15 116.5 12.6 113 401-515 18-176 (220)
170 TIGR00968 3a0106s01 sulfate AB 99.2 6E-11 1.3E-15 118.4 12.7 121 401-523 14-174 (237)
171 COG4608 AppF ABC-type oligopep 99.2 1.8E-11 3.8E-16 123.6 8.8 118 399-518 25-148 (268)
172 cd03251 ABCC_MsbA MsbA is an e 99.2 6.4E-11 1.4E-15 117.5 12.7 112 401-514 16-173 (234)
173 PRK11264 putative amino-acid A 99.2 6.5E-11 1.4E-15 118.7 12.9 112 401-514 17-179 (250)
174 cd03254 ABCC_Glucan_exporter_l 99.2 5.5E-11 1.2E-15 117.6 12.1 111 401-513 17-173 (229)
175 PRK13643 cbiO cobalt transport 99.2 9.1E-11 2E-15 120.8 14.1 112 401-514 20-179 (288)
176 PRK10070 glycine betaine trans 99.2 6.3E-11 1.4E-15 127.4 13.4 112 400-513 41-198 (400)
177 cd03252 ABCC_Hemolysin The ABC 99.2 5.5E-11 1.2E-15 118.3 12.1 113 401-515 16-174 (237)
178 PRK13636 cbiO cobalt transport 99.2 6.2E-11 1.4E-15 121.6 12.8 113 401-515 20-177 (283)
179 PRK10619 histidine/lysine/argi 99.2 8.1E-11 1.7E-15 118.8 13.4 112 401-514 19-187 (257)
180 PRK13541 cytochrome c biogenes 99.2 1E-10 2.2E-15 113.3 13.5 117 404-523 17-166 (195)
181 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.2 8.2E-11 1.8E-15 117.1 13.2 112 401-514 17-174 (238)
182 TIGR03740 galliderm_ABC gallid 99.2 7.9E-11 1.7E-15 116.2 13.0 112 401-514 14-159 (223)
183 cd03234 ABCG_White The White s 99.2 9.4E-11 2E-15 116.0 13.5 119 400-520 20-184 (226)
184 PRK11174 cysteine/glutathione 99.2 5.2E-11 1.1E-15 133.7 13.2 114 400-516 363-522 (588)
185 PRK13640 cbiO cobalt transport 99.2 1E-10 2.2E-15 120.0 14.1 112 401-514 21-178 (282)
186 PRK11124 artP arginine transpo 99.2 8.8E-11 1.9E-15 117.3 13.3 112 401-514 16-176 (242)
187 PRK14247 phosphate ABC transpo 99.2 1.2E-10 2.6E-15 116.9 14.3 111 401-513 17-180 (250)
188 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 5.7E-11 1.2E-15 135.9 13.5 119 400-520 466-629 (686)
189 PRK15056 manganese/iron transp 99.2 7.5E-11 1.6E-15 120.2 12.9 112 401-514 21-177 (272)
190 PRK13648 cbiO cobalt transport 99.2 1E-10 2.3E-15 118.9 13.9 112 401-514 23-177 (269)
191 cd00267 ABC_ATPase ABC (ATP-bi 99.2 1.2E-10 2.6E-15 108.7 13.2 111 401-523 13-123 (157)
192 TIGR02982 heterocyst_DevA ABC 99.2 7.4E-11 1.6E-15 116.3 12.3 137 400-538 18-201 (220)
193 TIGR03411 urea_trans_UrtD urea 99.2 8.6E-11 1.9E-15 117.3 12.8 112 401-514 16-178 (242)
194 PRK13649 cbiO cobalt transport 99.2 1.1E-10 2.3E-15 119.5 13.7 112 401-514 21-180 (280)
195 cd03232 ABC_PDR_domain2 The pl 99.2 1E-10 2.2E-15 113.2 12.8 117 400-523 20-152 (192)
196 cd03248 ABCC_TAP TAP, the Tran 99.2 8.7E-11 1.9E-15 116.0 12.6 120 401-523 28-193 (226)
197 COG1137 YhbG ABC-type (unclass 99.2 7.5E-12 1.6E-16 120.9 4.7 132 389-526 9-185 (243)
198 TIGR02323 CP_lyasePhnK phospho 99.2 1E-10 2.2E-15 117.6 13.1 112 401-514 17-183 (253)
199 PRK13639 cbiO cobalt transport 99.2 1.2E-10 2.5E-15 119.1 13.7 114 401-516 16-174 (275)
200 PF00005 ABC_tran: ABC transpo 99.2 2.5E-11 5.4E-16 110.1 7.9 103 403-507 1-136 (137)
201 PRK11231 fecE iron-dicitrate t 99.2 8E-11 1.7E-15 118.7 12.3 112 401-514 16-173 (255)
202 PRK11701 phnK phosphonate C-P 99.2 1.2E-10 2.6E-15 117.6 13.6 119 401-522 20-193 (258)
203 PRK10419 nikE nickel transport 99.2 1.1E-10 2.4E-15 118.9 13.2 112 400-513 25-185 (268)
204 PRK15079 oligopeptide ABC tran 99.2 1E-10 2.2E-15 122.9 13.4 114 400-515 34-197 (331)
205 PRK10253 iron-enterobactin tra 99.2 9.6E-11 2.1E-15 118.9 12.6 112 401-514 21-178 (265)
206 PRK14241 phosphate transporter 99.2 1.2E-10 2.7E-15 117.5 13.2 112 401-514 18-183 (258)
207 cd03264 ABC_drug_resistance_li 99.2 1.2E-10 2.5E-15 114.0 12.6 111 401-514 14-165 (211)
208 TIGR01277 thiQ thiamine ABC tr 99.2 1.3E-10 2.8E-15 114.0 13.0 112 402-515 13-164 (213)
209 PRK14235 phosphate transporter 99.2 2.1E-10 4.6E-15 116.6 14.9 112 401-514 33-198 (267)
210 PRK11176 lipid transporter ATP 99.2 8.6E-11 1.9E-15 131.7 13.2 116 400-517 356-518 (582)
211 PRK11614 livF leucine/isoleuci 99.2 5.5E-11 1.2E-15 118.4 10.4 112 401-514 19-172 (237)
212 PRK14269 phosphate ABC transpo 99.2 2.1E-10 4.6E-15 115.0 14.7 112 401-514 16-177 (246)
213 KOG0055 Multidrug/pheromone ex 99.2 1.1E-10 2.5E-15 136.7 14.5 116 396-513 361-523 (1228)
214 TIGR03796 NHPM_micro_ABC1 NHPM 99.2 6.5E-11 1.4E-15 135.9 12.4 122 400-523 492-659 (710)
215 PRK14242 phosphate transporter 99.2 1.7E-10 3.7E-15 116.0 13.9 112 401-514 20-184 (253)
216 CHL00131 ycf16 sulfate ABC tra 99.2 1.7E-10 3.6E-15 115.9 13.8 112 401-514 21-186 (252)
217 PRK09544 znuC high-affinity zi 99.2 1E-10 2.2E-15 118.1 12.3 112 401-514 18-155 (251)
218 TIGR03873 F420-0_ABC_ATP propo 99.2 1.6E-10 3.4E-15 116.7 13.5 111 401-513 15-171 (256)
219 TIGR03415 ABC_choXWV_ATP choli 99.2 1.2E-10 2.7E-15 124.4 13.4 114 399-514 36-199 (382)
220 cd03289 ABCC_CFTR2 The CFTR su 99.2 1.3E-10 2.8E-15 119.1 13.0 119 401-523 18-181 (275)
221 cd03237 ABC_RNaseL_inhibitor_d 99.2 1.1E-10 2.5E-15 117.6 12.3 113 402-516 9-152 (246)
222 PRK13546 teichoic acids export 99.2 1.7E-10 3.6E-15 117.6 13.7 114 398-513 35-177 (264)
223 PRK15439 autoinducer 2 ABC tra 99.2 1.4E-10 3E-15 128.4 14.2 112 401-514 25-175 (510)
224 PRK10938 putative molybdenum t 99.2 1E-10 2.2E-15 128.6 13.0 112 401-514 17-170 (490)
225 PRK10790 putative multidrug tr 99.2 8.2E-11 1.8E-15 132.3 12.4 115 400-516 354-513 (592)
226 TIGR02857 CydD thiol reductant 99.2 9.6E-11 2.1E-15 129.9 12.6 135 401-538 336-516 (529)
227 PRK13545 tagH teichoic acids e 99.2 9.1E-11 2E-15 129.1 12.2 112 401-514 38-178 (549)
228 PRK15177 Vi polysaccharide exp 99.2 1.3E-10 2.8E-15 114.5 12.2 111 402-514 2-139 (213)
229 PRK11144 modC molybdate transp 99.2 1.3E-10 2.7E-15 123.1 12.9 107 405-513 16-162 (352)
230 PRK13642 cbiO cobalt transport 99.2 2E-10 4.4E-15 117.5 14.0 113 401-515 21-176 (277)
231 PRK09473 oppD oligopeptide tra 99.2 1.4E-10 3.1E-15 121.8 13.1 119 400-520 29-202 (330)
232 PRK09580 sufC cysteine desulfu 99.2 2.2E-10 4.9E-15 114.6 13.9 119 401-522 15-187 (248)
233 PRK10771 thiQ thiamine transpo 99.2 1.7E-10 3.6E-15 114.7 12.9 109 405-515 17-165 (232)
234 PRK13645 cbiO cobalt transport 99.2 1.4E-10 3.1E-15 119.2 12.8 113 401-515 25-186 (289)
235 TIGR01193 bacteriocin_ABC ABC- 99.2 9.2E-11 2E-15 134.7 12.6 115 400-516 487-648 (708)
236 cd03369 ABCC_NFT1 Domain 2 of 99.2 2.5E-10 5.4E-15 111.4 13.8 110 401-514 22-160 (207)
237 PRK13633 cobalt transporter AT 99.2 2E-10 4.2E-15 117.7 13.4 112 401-514 24-179 (280)
238 PRK14273 phosphate ABC transpo 99.2 2.8E-10 6.2E-15 114.5 14.2 113 401-515 21-186 (254)
239 PRK14259 phosphate ABC transpo 99.2 2.5E-10 5.4E-15 116.3 13.9 112 401-514 27-189 (269)
240 COG4988 CydD ABC-type transpor 99.2 9.2E-11 2E-15 128.4 11.2 111 401-513 335-490 (559)
241 PRK10744 pstB phosphate transp 99.2 3.3E-10 7.2E-15 114.6 14.5 112 401-514 27-191 (260)
242 cd03250 ABCC_MRP_domain1 Domai 99.2 1.5E-10 3.2E-15 112.7 11.5 111 401-513 19-161 (204)
243 PRK14267 phosphate ABC transpo 99.2 3E-10 6.5E-15 114.2 13.9 112 401-514 18-184 (253)
244 COG4181 Predicted ABC-type tra 99.2 2.4E-10 5.1E-15 108.3 12.2 131 390-523 12-189 (228)
245 COG1118 CysA ABC-type sulfate/ 99.2 1.7E-10 3.7E-15 117.9 12.0 122 400-523 15-184 (345)
246 TIGR03375 type_I_sec_LssB type 99.2 1.5E-10 3.2E-15 132.7 13.0 114 400-515 478-637 (694)
247 PRK13657 cyclic beta-1,2-gluca 99.2 1.4E-10 3E-15 130.4 12.4 115 400-516 348-508 (588)
248 PRK09984 phosphonate/organopho 99.2 2.4E-10 5.2E-15 115.7 12.9 51 401-453 18-71 (262)
249 PRK11147 ABC transporter ATPas 99.2 1.7E-10 3.7E-15 131.0 13.1 48 401-450 17-64 (635)
250 TIGR00958 3a01208 Conjugate Tr 99.2 1.2E-10 2.7E-15 133.8 12.0 112 400-513 494-651 (711)
251 cd03236 ABC_RNaseL_inhibitor_d 99.2 3.4E-10 7.3E-15 114.8 13.8 111 401-514 15-174 (255)
252 PRK14254 phosphate ABC transpo 99.2 3.6E-10 7.8E-15 116.2 14.2 112 401-514 53-215 (285)
253 PRK10762 D-ribose transporter 99.2 2.8E-10 6.2E-15 125.6 14.2 112 401-514 18-176 (501)
254 PRK15093 antimicrobial peptide 99.2 2.7E-10 5.9E-15 119.5 13.4 114 400-515 20-194 (330)
255 PRK14248 phosphate ABC transpo 99.2 4.7E-10 1E-14 114.0 14.6 112 401-514 35-199 (268)
256 PRK14260 phosphate ABC transpo 99.2 4E-10 8.7E-15 113.9 14.0 114 401-516 21-187 (259)
257 PRK14251 phosphate ABC transpo 99.2 4.5E-10 9.7E-15 112.8 14.2 112 401-514 18-182 (251)
258 PRK10522 multidrug transporter 99.2 3.2E-10 7E-15 126.5 14.6 113 401-515 337-485 (547)
259 cd03297 ABC_ModC_molybdenum_tr 99.2 2.8E-10 6E-15 111.6 12.4 115 405-523 16-174 (214)
260 PRK14270 phosphate ABC transpo 99.2 4.2E-10 9.1E-15 113.1 14.0 114 401-516 18-184 (251)
261 TIGR02203 MsbA_lipidA lipid A 99.2 2.1E-10 4.5E-15 128.2 13.0 116 401-518 346-508 (571)
262 KOG0057 Mitochondrial Fe/S clu 99.2 1.3E-10 2.8E-15 126.1 10.9 122 400-524 365-532 (591)
263 COG1132 MdlB ABC-type multidru 99.2 1.9E-10 4E-15 128.8 12.4 114 400-515 342-501 (567)
264 PRK11160 cysteine/glutathione 99.2 1.9E-10 4.1E-15 129.2 12.5 114 401-516 354-512 (574)
265 TIGR01842 type_I_sec_PrtD type 99.2 2.5E-10 5.3E-15 127.3 13.2 113 400-514 331-489 (544)
266 cd03288 ABCC_SUR2 The SUR doma 99.2 3.3E-10 7.2E-15 114.5 13.0 112 401-514 35-191 (257)
267 PRK14274 phosphate ABC transpo 99.2 4.8E-10 1E-14 113.3 14.1 112 401-514 26-190 (259)
268 PRK03695 vitamin B12-transport 99.1 4E-10 8.7E-15 113.4 13.4 49 402-453 11-59 (248)
269 PRK10982 galactose/methyl gala 99.1 2.9E-10 6.3E-15 125.2 13.5 112 401-514 12-169 (491)
270 cd03290 ABCC_SUR1_N The SUR do 99.1 5.1E-10 1.1E-14 110.1 13.8 113 400-514 14-175 (218)
271 PRK14268 phosphate ABC transpo 99.1 3.7E-10 8E-15 114.2 13.1 113 401-515 26-190 (258)
272 PRK09700 D-allose transporter 99.1 3.6E-10 7.8E-15 125.0 14.1 112 401-514 19-180 (510)
273 TIGR02142 modC_ABC molybdenum 99.1 3E-10 6.5E-15 120.4 12.9 108 405-514 15-166 (354)
274 COG1123 ATPase components of v 99.1 1.4E-10 3E-15 127.2 10.5 124 399-524 303-474 (539)
275 COG0488 Uup ATPase components 99.1 2.4E-10 5.1E-15 126.7 12.5 136 400-540 16-211 (530)
276 PRK14263 phosphate ABC transpo 99.1 4.4E-10 9.6E-15 114.0 13.5 113 400-514 21-184 (261)
277 PRK10636 putative ABC transpor 99.1 2.5E-10 5.5E-15 129.7 13.0 120 401-523 15-192 (638)
278 COG3845 ABC-type uncharacteriz 99.1 2.8E-10 6.2E-15 122.3 12.5 135 399-535 16-196 (501)
279 COG4618 ArpD ABC-type protease 99.1 2.5E-10 5.5E-15 122.9 12.0 140 394-536 343-529 (580)
280 PRK14244 phosphate ABC transpo 99.1 4.3E-10 9.4E-15 113.0 13.2 112 401-514 19-184 (251)
281 PRK14258 phosphate ABC transpo 99.1 4.6E-10 1E-14 113.7 13.5 112 401-514 21-185 (261)
282 PRK14237 phosphate transporter 99.1 5.4E-10 1.2E-14 113.7 13.9 112 401-514 34-198 (267)
283 PRK14256 phosphate ABC transpo 99.1 4.7E-10 1E-14 112.8 13.4 112 401-514 18-183 (252)
284 TIGR01846 type_I_sec_HlyB type 99.1 3E-10 6.4E-15 130.2 13.4 115 400-516 470-630 (694)
285 COG4604 CeuD ABC-type enteroch 99.1 4.4E-10 9.6E-15 108.6 12.3 54 400-455 14-67 (252)
286 PRK14275 phosphate ABC transpo 99.1 4.5E-10 9.8E-15 115.5 13.4 112 401-514 53-217 (286)
287 PRK14243 phosphate transporter 99.1 7.1E-10 1.5E-14 112.6 14.5 113 401-515 24-187 (264)
288 COG4987 CydC ABC-type transpor 99.1 3.4E-10 7.5E-15 122.7 12.8 131 395-527 346-522 (573)
289 PRK14262 phosphate ABC transpo 99.1 6.1E-10 1.3E-14 111.7 13.8 111 401-513 17-180 (250)
290 PRK14245 phosphate ABC transpo 99.1 5.9E-10 1.3E-14 112.0 13.7 113 401-515 17-182 (250)
291 PRK14265 phosphate ABC transpo 99.1 5.1E-10 1.1E-14 114.4 13.4 119 401-522 34-203 (274)
292 PRK14236 phosphate transporter 99.1 7.3E-10 1.6E-14 113.0 14.4 112 401-514 39-203 (272)
293 COG4133 CcmA ABC-type transpor 99.1 4.8E-10 1E-14 107.6 12.1 138 401-541 16-192 (209)
294 PRK13547 hmuV hemin importer A 99.1 4.7E-10 1E-14 114.8 12.9 51 401-453 15-73 (272)
295 PRK14253 phosphate ABC transpo 99.1 9.5E-10 2.1E-14 110.3 14.9 112 401-514 17-180 (249)
296 PRK14264 phosphate ABC transpo 99.1 6E-10 1.3E-14 115.7 13.9 51 401-453 59-114 (305)
297 TIGR01194 cyc_pep_trnsptr cycl 99.1 5.3E-10 1.2E-14 125.1 14.4 136 401-538 356-530 (555)
298 PRK14249 phosphate ABC transpo 99.1 8.1E-10 1.7E-14 111.1 14.2 112 401-514 18-182 (251)
299 PRK10789 putative multidrug tr 99.1 3.5E-10 7.5E-15 126.9 12.7 115 400-516 328-488 (569)
300 PRK11288 araG L-arabinose tran 99.1 4.6E-10 1E-14 123.9 13.5 112 401-514 18-175 (501)
301 TIGR01192 chvA glucan exporter 99.1 3.5E-10 7.5E-15 127.3 12.7 112 401-514 349-506 (585)
302 TIGR02204 MsbA_rel ABC transpo 99.1 3.1E-10 6.7E-15 127.0 12.2 113 400-514 353-511 (576)
303 PRK10261 glutathione transport 99.1 4E-10 8.8E-15 127.7 13.3 113 400-514 337-498 (623)
304 COG1129 MglA ABC-type sugar tr 99.1 4.9E-10 1.1E-14 122.2 13.3 114 399-514 20-180 (500)
305 PRK14240 phosphate transporter 99.1 9.2E-10 2E-14 110.5 14.4 112 401-514 17-181 (250)
306 PRK09700 D-allose transporter 99.1 3.2E-10 7E-15 125.4 12.1 49 402-452 278-326 (510)
307 PRK13549 xylose transporter AT 99.1 5.1E-10 1.1E-14 123.8 13.6 112 401-514 19-178 (506)
308 COG1119 ModF ABC-type molybden 99.1 5.7E-10 1.2E-14 111.1 12.5 126 399-526 43-218 (257)
309 cd03291 ABCC_CFTR1 The CFTR su 99.1 4.5E-10 9.7E-15 115.6 12.2 112 401-514 51-194 (282)
310 PRK10982 galactose/methyl gala 99.1 3.2E-10 6.9E-15 124.9 11.8 51 401-453 262-312 (491)
311 PRK15134 microcin C ABC transp 99.1 4.4E-10 9.5E-15 124.9 12.8 113 400-514 22-191 (529)
312 COG3840 ThiQ ABC-type thiamine 99.1 6.1E-10 1.3E-14 106.5 11.8 116 406-524 18-173 (231)
313 PRK14238 phosphate transporter 99.1 1.1E-09 2.3E-14 111.8 14.5 112 401-514 38-202 (271)
314 PRK14239 phosphate transporter 99.1 7.9E-10 1.7E-14 111.0 13.2 112 401-514 19-183 (252)
315 PRK14272 phosphate ABC transpo 99.1 8.7E-10 1.9E-14 110.7 13.4 112 401-514 18-183 (252)
316 PRK11288 araG L-arabinose tran 99.1 4.4E-10 9.6E-15 124.1 12.3 119 401-522 267-438 (501)
317 PRK10762 D-ribose transporter 99.1 6.7E-10 1.5E-14 122.7 13.7 111 402-514 267-430 (501)
318 PRK14246 phosphate ABC transpo 99.1 1E-09 2.2E-14 111.1 13.8 112 400-513 23-187 (257)
319 PRK14271 phosphate ABC transpo 99.1 1.2E-09 2.5E-14 112.0 14.1 112 401-514 35-198 (276)
320 PRK15064 ABC transporter ATP-b 99.1 6.1E-10 1.3E-14 123.8 13.0 120 401-523 15-198 (530)
321 TIGR02633 xylG D-xylose ABC tr 99.1 5.2E-10 1.1E-14 123.4 12.3 111 401-513 274-437 (500)
322 PRK10261 glutathione transport 99.1 6.1E-10 1.3E-14 126.3 13.1 113 400-514 29-203 (623)
323 PRK13549 xylose transporter AT 99.1 6E-10 1.3E-14 123.2 12.5 112 401-514 276-440 (506)
324 PRK10636 putative ABC transpor 99.1 4.9E-10 1.1E-14 127.4 12.1 120 401-523 326-473 (638)
325 PTZ00265 multidrug resistance 99.1 5E-10 1.1E-14 137.3 12.8 112 401-514 1182-1393(1466)
326 PRK14261 phosphate ABC transpo 99.1 1.2E-09 2.5E-14 110.0 13.2 112 401-514 20-184 (253)
327 TIGR02633 xylG D-xylose ABC tr 99.1 1E-09 2.2E-14 121.1 13.8 112 401-514 15-176 (500)
328 TIGR03269 met_CoM_red_A2 methy 99.1 9.5E-10 2.1E-14 122.0 13.6 112 401-514 298-462 (520)
329 PRK14266 phosphate ABC transpo 99.1 2.1E-09 4.5E-14 107.9 14.7 114 401-516 17-183 (250)
330 PRK15439 autoinducer 2 ABC tra 99.1 6.6E-10 1.4E-14 123.1 12.0 111 402-514 278-438 (510)
331 TIGR03269 met_CoM_red_A2 methy 99.1 1.3E-09 2.8E-14 120.9 14.1 47 401-449 14-62 (520)
332 TIGR03771 anch_rpt_ABC anchore 99.1 2.1E-09 4.6E-14 106.4 14.0 104 409-514 2-148 (223)
333 PRK11147 ABC transporter ATPas 99.1 8.1E-10 1.8E-14 125.6 12.5 120 401-523 333-483 (635)
334 PRK15064 ABC transporter ATP-b 99.1 8E-10 1.7E-14 122.9 12.1 119 401-522 333-480 (530)
335 PRK14257 phosphate ABC transpo 99.1 1.8E-09 3.9E-14 113.5 14.0 120 401-523 96-268 (329)
336 PRK15134 microcin C ABC transp 99.1 1.2E-09 2.7E-14 121.3 13.4 112 401-515 300-461 (529)
337 PLN03130 ABC transporter C fam 99.1 7.6E-10 1.7E-14 136.9 12.8 112 401-514 1253-1409(1622)
338 PLN03232 ABC transporter C fam 99.1 7E-10 1.5E-14 136.7 12.3 111 401-513 1250-1405(1495)
339 PRK10938 putative molybdenum t 99.0 1.3E-09 2.9E-14 119.9 13.0 113 401-515 274-437 (490)
340 PRK14255 phosphate ABC transpo 99.0 3.4E-09 7.5E-14 106.5 14.4 112 401-514 19-183 (252)
341 KOG0055 Multidrug/pheromone ex 99.0 1.2E-09 2.5E-14 128.4 12.4 112 398-512 1001-1159(1228)
342 PLN03211 ABC transporter G-25; 99.0 1.4E-09 3E-14 124.1 12.7 136 401-538 82-265 (659)
343 PRK11819 putative ABC transpor 99.0 2.1E-09 4.6E-14 120.3 14.0 47 400-448 20-66 (556)
344 PLN03073 ABC transporter F fam 99.0 2E-09 4.4E-14 123.7 13.8 112 401-514 523-662 (718)
345 PRK14252 phosphate ABC transpo 99.0 2.8E-09 6E-14 108.2 13.3 112 401-514 30-196 (265)
346 PRK13409 putative ATPase RIL; 99.0 1.4E-09 2.9E-14 122.7 12.1 111 401-514 88-247 (590)
347 PRK13409 putative ATPase RIL; 99.0 1.6E-09 3.4E-14 122.1 12.6 113 402-516 354-490 (590)
348 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 1.6E-09 3.5E-14 121.2 12.4 112 401-514 336-478 (552)
349 COG4175 ProV ABC-type proline/ 99.0 1.2E-09 2.5E-14 112.1 10.1 119 402-523 43-211 (386)
350 TIGR00957 MRP_assoc_pro multi 99.0 1.5E-09 3.3E-14 133.9 13.2 112 401-514 1300-1456(1522)
351 COG0488 Uup ATPase components 99.0 1.5E-09 3.3E-14 120.3 11.8 121 400-523 335-482 (530)
352 COG0444 DppD ABC-type dipeptid 99.0 1.2E-09 2.7E-14 112.6 10.0 124 399-524 17-198 (316)
353 PRK11819 putative ABC transpor 99.0 2E-09 4.4E-14 120.5 12.6 118 401-521 338-486 (556)
354 COG1123 ATPase components of v 99.0 1.3E-09 2.8E-14 119.7 10.5 125 400-526 22-201 (539)
355 COG4619 ABC-type uncharacteriz 99.0 6E-09 1.3E-13 98.6 13.0 55 398-454 14-68 (223)
356 PTZ00243 ABC transporter; Prov 99.0 1.9E-09 4.1E-14 133.2 12.4 110 401-512 1324-1479(1560)
357 PLN03073 ABC transporter F fam 99.0 3.3E-09 7.2E-14 121.9 13.3 50 401-452 191-243 (718)
358 TIGR00750 lao LAO/AO transport 99.0 4.1E-09 8.8E-14 109.3 12.7 114 401-516 22-145 (300)
359 COG4525 TauB ABC-type taurine 99.0 4.2E-09 9.2E-14 101.8 11.8 107 400-508 18-161 (259)
360 TIGR01271 CFTR_protein cystic 99.0 3.3E-09 7.2E-14 130.7 14.0 111 401-514 1233-1388(1490)
361 COG4161 ArtP ABC-type arginine 99.0 6.8E-09 1.5E-13 97.6 12.6 126 400-528 15-189 (242)
362 TIGR00954 3a01203 Peroxysomal 99.0 4.4E-09 9.5E-14 120.1 13.7 119 401-522 466-624 (659)
363 TIGR01257 rim_protein retinal- 99.0 2.6E-09 5.5E-14 133.0 12.6 147 400-549 1952-2139(2272)
364 COG4167 SapF ABC-type antimicr 99.0 2.5E-09 5.5E-14 102.3 9.6 52 399-452 25-76 (267)
365 TIGR01257 rim_protein retinal- 99.0 3.1E-09 6.8E-14 132.3 13.0 113 401-515 944-1097(2272)
366 cd03114 ArgK-like The function 99.0 4.6E-09 9.9E-14 98.1 11.1 122 417-548 1-132 (148)
367 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 5.1E-09 1.1E-13 117.2 13.3 46 401-448 19-64 (552)
368 PTZ00265 multidrug resistance 98.9 5.3E-09 1.2E-13 128.4 13.5 48 400-449 398-445 (1466)
369 KOG0056 Heavy metal exporter H 98.9 3.4E-09 7.3E-14 113.6 9.8 124 398-523 549-721 (790)
370 COG4559 ABC-type hemin transpo 98.9 7E-09 1.5E-13 101.4 11.0 53 401-455 15-67 (259)
371 COG1101 PhnK ABC-type uncharac 98.9 8.5E-09 1.8E-13 101.1 11.2 55 401-457 20-74 (263)
372 COG0396 sufC Cysteine desulfur 98.9 1.2E-08 2.6E-13 100.9 12.3 135 400-537 17-202 (251)
373 PRK10535 macrolide transporter 98.9 9.4E-09 2E-13 117.2 13.0 121 400-523 21-187 (648)
374 TIGR00955 3a01204 The Eye Pigm 98.9 1.2E-08 2.5E-13 115.8 12.5 137 400-538 38-225 (617)
375 TIGR01187 potA spermidine/putr 98.9 9.3E-09 2E-13 107.8 10.8 95 420-514 1-135 (325)
376 PLN03232 ABC transporter C fam 98.8 1.2E-08 2.7E-13 125.9 11.7 112 401-514 631-775 (1495)
377 PRK13849 putative crown gall t 98.8 6.6E-08 1.4E-12 96.8 14.7 89 416-509 2-95 (231)
378 PLN03130 ABC transporter C fam 98.8 2.1E-08 4.5E-13 124.4 13.5 112 401-514 631-775 (1622)
379 cd03270 ABC_UvrA_I The excisio 98.8 6.2E-08 1.3E-12 96.4 13.6 33 398-432 6-38 (226)
380 COG4107 PhnK ABC-type phosphon 98.8 4.2E-08 9.1E-13 93.4 11.6 57 389-450 11-67 (258)
381 TIGR00956 3a01205 Pleiotropic 98.8 2.7E-08 5.8E-13 122.0 12.7 115 400-516 776-939 (1394)
382 COG4778 PhnL ABC-type phosphon 98.8 2.5E-08 5.4E-13 94.7 9.4 54 397-452 21-74 (235)
383 PRK09435 membrane ATPase/prote 98.8 2.3E-08 5E-13 105.0 10.0 103 412-514 53-165 (332)
384 PLN03140 ABC transporter G fam 98.8 3.9E-08 8.4E-13 120.7 13.2 137 400-538 893-1078(1470)
385 TIGR01271 CFTR_protein cystic 98.8 2.9E-08 6.3E-13 122.5 12.2 112 401-514 440-583 (1490)
386 COG4674 Uncharacterized ABC-ty 98.8 9.7E-09 2.1E-13 99.3 5.8 56 399-456 17-73 (249)
387 PTZ00243 ABC transporter; Prov 98.8 4.6E-08 9.9E-13 121.1 13.1 112 401-514 674-817 (1560)
388 KOG0059 Lipid exporter ABCA1 a 98.7 6.2E-08 1.3E-12 114.1 12.4 147 402-551 580-769 (885)
389 COG4172 ABC-type uncharacteriz 98.7 6.4E-08 1.4E-12 102.3 10.7 109 400-512 300-459 (534)
390 cd03278 ABC_SMC_barmotin Barmo 98.7 2.7E-07 5.9E-12 90.0 14.5 129 405-538 15-175 (197)
391 TIGR00957 MRP_assoc_pro multi 98.7 5.4E-08 1.2E-12 120.4 11.6 113 401-515 652-796 (1522)
392 PF07015 VirC1: VirC1 protein; 98.7 5.6E-08 1.2E-12 96.8 9.4 86 416-510 2-96 (231)
393 PHA02518 ParA-like protein; Pr 98.7 2.2E-07 4.7E-12 90.1 13.3 84 417-509 2-88 (211)
394 COG1703 ArgK Putative periplas 98.7 2E-07 4.4E-12 95.4 12.9 103 412-514 48-160 (323)
395 COG5265 ATM1 ABC-type transpor 98.7 8.7E-08 1.9E-12 101.7 10.3 114 397-512 273-432 (497)
396 PLN03140 ABC transporter G fam 98.7 4.7E-08 1E-12 120.0 9.5 53 398-452 176-231 (1470)
397 PF03308 ArgK: ArgK protein; 98.7 7.2E-08 1.6E-12 97.3 8.9 103 412-514 26-138 (266)
398 cd02037 MRP-like MRP (Multiple 98.7 3E-07 6.5E-12 86.9 12.4 79 417-510 1-80 (169)
399 smart00382 AAA ATPases associa 98.6 4.6E-07 9.9E-12 79.4 12.6 96 417-518 4-99 (148)
400 COG4172 ABC-type uncharacteriz 98.6 1.6E-07 3.5E-12 99.3 11.1 126 396-523 19-201 (534)
401 KOG0062 ATPase component of AB 98.6 8.2E-08 1.8E-12 103.9 8.6 134 402-541 95-257 (582)
402 PF09140 MipZ: ATPase MipZ; I 98.6 2.6E-07 5.6E-12 92.8 11.3 120 417-546 2-138 (261)
403 COG4136 ABC-type uncharacteriz 98.6 1.5E-07 3.2E-12 87.9 8.6 117 401-523 16-177 (213)
404 KOG0054 Multidrug resistance-a 98.6 2.4E-07 5.1E-12 111.4 12.6 110 401-512 1154-1308(1381)
405 TIGR00956 3a01205 Pleiotropic 98.6 2.1E-07 4.7E-12 114.2 12.5 124 400-525 74-255 (1394)
406 KOG0066 eIF2-interacting prote 98.6 1.6E-07 3.5E-12 99.7 9.6 104 417-524 615-748 (807)
407 COG4148 ModC ABC-type molybdat 98.6 2E-07 4.3E-12 94.7 9.8 117 405-523 16-175 (352)
408 cd03272 ABC_SMC3_euk Eukaryoti 98.6 1.1E-06 2.4E-11 87.6 14.4 23 417-439 25-47 (243)
409 cd02040 NifH NifH gene encodes 98.5 4.1E-07 8.9E-12 91.9 9.7 40 416-455 2-41 (270)
410 PF01656 CbiA: CobQ/CobB/MinD/ 98.5 5.3E-07 1.1E-11 85.9 9.2 92 418-510 1-107 (195)
411 PRK13185 chlL protochlorophyll 98.5 1.1E-06 2.5E-11 89.1 11.8 39 416-454 3-41 (270)
412 cd01120 RecA-like_NTPases RecA 98.5 1.7E-06 3.6E-11 79.1 11.7 93 417-509 1-97 (165)
413 cd03281 ABC_MSH5_euk MutS5 hom 98.5 7.1E-07 1.5E-11 88.3 9.4 99 410-514 24-125 (213)
414 TIGR02858 spore_III_AA stage I 98.4 3.8E-07 8.3E-12 93.4 7.6 91 416-509 112-206 (270)
415 cd03280 ABC_MutS2 MutS2 homolo 98.4 2.4E-07 5.3E-12 90.2 5.9 31 405-436 19-49 (200)
416 KOG0061 Transporter, ABC super 98.4 1.5E-06 3.2E-11 98.6 13.1 123 399-523 42-217 (613)
417 COG4178 ABC-type uncharacteriz 98.4 8.4E-07 1.8E-11 99.1 10.5 120 393-515 400-551 (604)
418 KOG0927 Predicted transporter 98.4 9.2E-07 2E-11 96.5 10.4 46 399-446 87-132 (614)
419 cd03273 ABC_SMC2_euk Eukaryoti 98.4 5.6E-06 1.2E-10 83.5 15.6 58 480-538 167-228 (251)
420 COG1245 Predicted ATPase, RNas 98.4 1.2E-06 2.6E-11 93.9 10.8 118 405-526 354-502 (591)
421 cd02117 NifH_like This family 98.4 8.7E-07 1.9E-11 87.0 9.0 39 417-455 2-40 (212)
422 PRK13230 nitrogenase reductase 98.4 9.3E-07 2E-11 90.4 9.5 39 416-454 2-40 (279)
423 KOG0927 Predicted transporter 98.4 1E-06 2.2E-11 96.1 10.0 118 403-523 406-552 (614)
424 KOG2355 Predicted ABC-type tra 98.4 1E-06 2.2E-11 86.1 8.5 121 401-523 28-191 (291)
425 TIGR03371 cellulose_yhjQ cellu 98.4 4.7E-06 1E-10 82.9 13.5 40 416-455 2-42 (246)
426 cd02032 Bchl_like This family 98.4 2E-06 4.4E-11 87.2 11.1 38 417-454 2-39 (267)
427 cd03243 ABC_MutS_homologs The 98.4 6.6E-07 1.4E-11 87.3 6.7 30 407-438 23-52 (202)
428 cd03271 ABC_UvrA_II The excisi 98.4 9.3E-06 2E-10 82.9 15.3 35 400-436 8-42 (261)
429 PRK06067 flagellar accessory p 98.4 1.1E-05 2.4E-10 80.4 15.5 93 410-508 22-131 (234)
430 cd03283 ABC_MutS-like MutS-lik 98.4 1.2E-06 2.6E-11 85.8 8.2 40 402-445 16-57 (199)
431 cd03276 ABC_SMC6_euk Eukaryoti 98.3 9.6E-06 2.1E-10 79.2 14.4 111 406-520 15-154 (198)
432 PRK09841 cryptic autophosphory 98.3 3.3E-06 7.1E-11 97.8 12.9 101 411-512 527-655 (726)
433 TIGR01281 DPOR_bchL light-inde 98.3 1.8E-06 3.9E-11 87.5 9.6 38 417-454 2-39 (268)
434 PRK13232 nifH nitrogenase redu 98.3 1.2E-06 2.6E-11 89.4 8.2 40 416-455 2-41 (273)
435 cd03275 ABC_SMC1_euk Eukaryoti 98.3 4.6E-06 9.9E-11 84.0 12.3 24 417-440 24-47 (247)
436 cd03282 ABC_MSH4_euk MutS4 hom 98.3 2.1E-06 4.5E-11 84.5 9.3 37 401-439 17-53 (204)
437 PRK10818 cell division inhibit 98.3 4.2E-06 9.2E-11 84.9 11.9 39 416-454 3-42 (270)
438 PRK11670 antiporter inner memb 98.3 1.3E-05 2.9E-10 85.6 16.2 44 415-458 107-151 (369)
439 cd02042 ParA ParA and ParB of 98.3 4.4E-06 9.5E-11 72.3 10.3 38 417-454 1-39 (104)
440 PRK13235 nifH nitrogenase redu 98.3 1.5E-06 3.3E-11 88.6 8.6 39 416-454 2-40 (274)
441 TIGR01007 eps_fam capsular exo 98.3 9.7E-06 2.1E-10 78.9 13.6 43 415-457 17-60 (204)
442 PRK12337 2-phosphoglycerate ki 98.3 1.3E-06 2.7E-11 95.1 8.0 106 339-455 180-291 (475)
443 COG4615 PvdE ABC-type sideroph 98.3 3E-06 6.6E-11 89.6 10.5 109 403-513 339-482 (546)
444 PRK11519 tyrosine kinase; Prov 98.3 2.8E-06 6.2E-11 98.2 11.3 100 411-511 522-649 (719)
445 cd01130 VirB11-like_ATPase Typ 98.3 5.9E-07 1.3E-11 86.6 4.7 91 408-507 20-110 (186)
446 TIGR03029 EpsG chain length de 98.3 3.5E-06 7.6E-11 85.8 10.4 98 412-510 100-225 (274)
447 PRK08533 flagellar accessory p 98.3 9.6E-06 2.1E-10 81.2 13.3 95 410-510 21-130 (230)
448 COG1192 Soj ATPases involved i 98.3 4.5E-06 9.7E-11 84.2 11.0 40 415-454 2-43 (259)
449 cd03274 ABC_SMC4_euk Eukaryoti 98.3 3.6E-06 7.7E-11 83.2 9.9 32 400-438 17-48 (212)
450 TIGR01969 minD_arch cell divis 98.3 4.8E-06 1E-10 82.9 10.9 38 417-454 2-40 (251)
451 TIGR01968 minD_bact septum sit 98.3 6.4E-06 1.4E-10 82.4 11.6 39 416-454 2-41 (261)
452 TIGR01005 eps_transp_fam exopo 98.3 8.3E-06 1.8E-10 94.7 13.8 100 410-510 541-668 (754)
453 PRK10037 cell division protein 98.3 2.1E-06 4.5E-11 86.6 7.6 40 416-455 2-42 (250)
454 COG4138 BtuD ABC-type cobalami 98.3 6.1E-06 1.3E-10 79.0 10.1 52 406-460 18-69 (248)
455 PRK13768 GTPase; Provisional 98.3 3.1E-06 6.6E-11 85.9 8.8 40 415-454 2-41 (253)
456 cd03240 ABC_Rad50 The catalyti 98.2 9.6E-06 2.1E-10 79.6 11.9 52 487-538 129-182 (204)
457 CHL00175 minD septum-site dete 98.2 8.3E-06 1.8E-10 83.4 11.8 42 414-455 14-56 (281)
458 TIGR01287 nifH nitrogenase iro 98.2 5.3E-06 1.2E-10 84.5 10.3 38 417-454 2-39 (275)
459 COG2401 ABC-type ATPase fused 98.2 3.2E-06 6.9E-11 89.9 8.6 125 400-526 396-554 (593)
460 PRK13233 nifH nitrogenase redu 98.2 7.9E-06 1.7E-10 83.3 11.1 40 416-455 3-43 (275)
461 cd03227 ABC_Class2 ABC-type Cl 98.2 1.2E-05 2.7E-10 75.8 11.6 98 416-522 22-124 (162)
462 PRK09183 transposase/IS protei 98.2 1E-05 2.2E-10 82.5 11.7 113 405-540 95-207 (259)
463 TIGR03018 pepcterm_TyrKin exop 98.2 2.8E-05 6E-10 76.2 14.3 42 415-456 35-78 (207)
464 CHL00072 chlL photochlorophyll 98.2 6.5E-06 1.4E-10 85.2 10.4 38 418-455 3-40 (290)
465 cd01124 KaiC KaiC is a circadi 98.2 1.7E-05 3.6E-10 75.4 12.3 91 417-511 1-109 (187)
466 cd03279 ABC_sbcCD SbcCD and ot 98.2 2.9E-05 6.3E-10 76.4 14.2 31 406-438 20-51 (213)
467 TIGR00073 hypB hydrogenase acc 98.2 6.1E-06 1.3E-10 80.9 9.1 93 412-509 19-114 (207)
468 COG1618 Predicted nucleotide k 98.2 8.2E-06 1.8E-10 77.0 9.4 95 415-516 5-119 (179)
469 cd03287 ABC_MSH3_euk MutS3 hom 98.2 6E-06 1.3E-10 82.4 9.0 44 401-446 19-63 (222)
470 PRK13869 plasmid-partitioning 98.2 5.2E-06 1.1E-10 89.8 9.1 41 415-455 121-162 (405)
471 PRK04220 2-phosphoglycerate ki 98.2 5E-06 1.1E-10 86.2 8.5 103 344-455 24-128 (301)
472 PRK13231 nitrogenase reductase 98.2 4.3E-06 9.4E-11 84.7 8.0 40 415-455 2-41 (264)
473 cd01131 PilT Pilus retraction 98.2 1.1E-05 2.4E-10 78.8 10.2 80 417-507 3-84 (198)
474 PHA02519 plasmid partition pro 98.2 1.1E-05 2.3E-10 86.9 11.1 41 414-454 105-147 (387)
475 cd02034 CooC The accessory pro 98.2 7.6E-06 1.6E-10 73.5 8.4 86 418-508 2-97 (116)
476 PF06564 YhjQ: YhjQ protein; 98.2 9.2E-06 2E-10 81.9 9.8 40 415-454 1-41 (243)
477 PRK13234 nifH nitrogenase redu 98.1 4.2E-06 9.2E-11 86.7 7.2 41 415-455 4-44 (295)
478 cd03111 CpaE_like This protein 98.1 2E-05 4.4E-10 69.3 10.5 41 417-457 1-43 (106)
479 cd02035 ArsA ArsA ATPase funct 98.1 1.5E-05 3.2E-10 78.8 10.6 39 417-455 1-39 (217)
480 PRK06526 transposase; Provisio 98.1 1.3E-05 2.9E-10 81.4 10.4 103 417-540 100-202 (254)
481 cd03285 ABC_MSH2_euk MutS2 hom 98.1 8E-06 1.7E-10 81.3 8.6 34 402-437 19-52 (222)
482 PF03029 ATP_bind_1: Conserved 98.1 1.7E-06 3.6E-11 87.2 3.7 34 420-453 1-34 (238)
483 PF13401 AAA_22: AAA domain; P 98.1 1.6E-05 3.6E-10 70.9 9.6 104 416-524 5-113 (131)
484 PF02881 SRP54_N: SRP54-type p 98.1 2.5E-05 5.5E-10 64.3 9.8 73 315-390 3-75 (75)
485 KOG0054 Multidrug resistance-a 98.1 1.3E-05 2.8E-10 96.9 11.1 108 400-509 534-673 (1381)
486 COG0003 ArsA Predicted ATPase 98.1 7E-06 1.5E-10 86.1 7.9 38 416-453 3-40 (322)
487 PRK13705 plasmid-partitioning 98.1 2.6E-05 5.6E-10 84.0 12.4 42 414-455 105-148 (388)
488 PRK13236 nitrogenase reductase 98.1 9.2E-06 2E-10 84.2 8.4 39 416-454 7-45 (296)
489 COG1245 Predicted ATPase, RNas 98.1 8E-06 1.7E-10 87.8 7.9 125 411-537 98-271 (591)
490 PRK04296 thymidine kinase; Pro 98.1 1.1E-05 2.3E-10 78.4 8.1 85 417-509 4-90 (190)
491 cd03284 ABC_MutS1 MutS1 homolo 98.1 7.6E-06 1.6E-10 81.1 7.1 33 402-437 20-52 (216)
492 cd00820 PEPCK_HprK Phosphoenol 98.1 4.1E-06 8.9E-11 74.3 4.5 46 401-454 3-48 (107)
493 cd00550 ArsA_ATPase Oxyanion-t 98.1 2.9E-05 6.2E-10 78.8 11.3 38 417-454 2-39 (254)
494 COG3640 CooC CO dehydrogenase 98.1 2.6E-05 5.6E-10 77.7 10.5 37 417-453 2-39 (255)
495 cd02036 MinD Bacterial cell di 98.1 1.9E-05 4.2E-10 74.2 9.4 39 418-456 2-41 (179)
496 TIGR02788 VirB11 P-type DNA tr 98.1 1.2E-05 2.6E-10 83.9 8.6 90 407-508 138-229 (308)
497 TIGR03453 partition_RepA plasm 98.1 1.3E-05 2.8E-10 86.1 9.0 41 415-455 104-145 (387)
498 COG0489 Mrp ATPases involved i 98.1 1.2E-05 2.6E-10 82.3 8.3 96 415-510 57-179 (265)
499 cd03110 Fer4_NifH_child This p 98.0 3.3E-05 7.2E-10 73.4 10.8 37 418-458 2-39 (179)
500 PF02374 ArsA_ATPase: Anion-tr 98.0 9.1E-06 2E-10 84.8 7.4 39 416-454 2-40 (305)
No 1
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-87 Score=696.62 Aligned_cols=483 Identities=45% Similarity=0.693 Sum_probs=361.6
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhhhhcccCCCceeeccCCCceeeEEEEecccceEEEEEeccccc
Q 008816 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (552)
Q Consensus 1 MlD~~~IftkgGiVLWs~~~~~~~~~~~~in~lI~~vlleer~~~~~~~~~~~~~~y~lkw~~~ne~~Lvfv~vyq~il~ 80 (552)
|||+|.||||||+|||.|+.....+.+ |||+||++||++||++..+|.+ +.|||+|+++|+++||||||||+|++
T Consensus 1 Mld~faIFtkgG~vLw~~~~~~~~~~~-~in~lI~~~ll~er~~~~~~~~----~~yTlk~q~~N~~~lvfvvvfqki~~ 75 (587)
T KOG0781|consen 1 MLDQFAIFTKGGLVLWCYQEVGDNLKG-PINALIRSVLLSERGGVNSFTF----EAYTLKYQLDNQYSLVFVVVFQKILT 75 (587)
T ss_pred CcceeeeecCCcEEEEEecccchhccc-hHHHHHHHHHHHhhcCcccCch----hheeEeeeecCCccEEEEEEEeccch
Confidence 999999999999999987766666667 9999999999999999999999 99999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcCC--CCcchHHHHHHHHHHHHHHHHHH---hhhhcccccccccccccCCccCCCCCCC
Q 008816 81 LLYVDDLLAMMKQSFSEIYDPKRT--DYSDFDEMFRQLRKEAEARAEEL---KKSKQVTKPMNNLKKQGGQLQKGGFERG 155 (552)
Q Consensus 81 l~yvd~ll~~v~~~F~~~y~~~~~--~~~~f~~~f~~~l~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (552)
|.|+|+||++++..|+..|.+... .+-+|.+.+..+|+......... .+.+..++.++++++....
T Consensus 76 L~yv~~ll~~v~~~f~e~~~~~~~~~l~~n~~~~~~e~lk~rq~~ne~t~~k~~~pi~~~~~~~~~K~~~~--------- 146 (587)
T KOG0781|consen 76 LTYVDKLLNDVLNLFREKYDTQSALSLLNNTFDFQEELLKLRQVANEATEYKIRAPITMKKSEDLEKAKDP--------- 146 (587)
T ss_pred hhhHHHHHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHHhhcccccchhhhcccchhhhhhcchhhhhh---------
Confidence 999999999999999999987532 34456666666666544322111 1111112223333322110
Q ss_pred CCCCCCCCCCCCCCCC-cccCcccCCCCCCCCCcccccccccccCCCCCCCCCCcchhhhHHHHHhhhcCCCCcccccCC
Q 008816 156 SNRSGGGSANDDGDSD-NMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSK 234 (552)
Q Consensus 156 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (552)
+. ...+++++.. ....+.+.+++.+. + +. ..++++-+..+++. +..
T Consensus 147 -v~---~~~e~~~d~s~kk~~nt~kng~~~~--------------------~-h~-----~~~kk~~~~tkkKg---~~s 193 (587)
T KOG0781|consen 147 -VR---SPIETNGDKSAKKKKNTKKNGAKKE--------------------G-HD-----EEFKKKHRETKKKG---NKS 193 (587)
T ss_pred -hc---cccccccccchhcccccccCCCccc--------------------c-hh-----hhhhhhhccccccc---ccC
Confidence 11 1111111110 00000011111111 0 01 11122212111111 112
Q ss_pred CCCCCCCccccccCccCCCCC--CCCccccCCCCCCCCCch-hhhhhhcCCCccccccc---cCCCCcchhhhhhccCCC
Q 008816 235 GSNPDPKKKITKKNRVWDDSP--PESKLDFTDPAGGNGSNI-EVEAADHGESMMDKEEV---FSSDSESEEDEEVGKHNK 308 (552)
Q Consensus 235 ~~~~~~~~k~~K~~r~W~~~~--~~~~Ld~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 308 (552)
++.+.|++|.+|++|+||+.+ +...||||++..+++.+. +.+...++.++.+-.+. +++++++.++. ...++.
T Consensus 194 ~~~~~p~kKGkk~~RvWdd~g~~d~~~ld~sss~sn~e~a~~e~vn~~~~~s~~~~~~~l~~~~~d~~~s~~~-~~~~~~ 272 (587)
T KOG0781|consen 194 TKVDAPKKKGKKAPRVWDDAGCEDEKVLDYSSSTSNGENALSETVNLDQGESMGGQLQDLDKDSSDDEGSADN-STDPAA 272 (587)
T ss_pred CCCCCchhhcccccchhhhccchhhcccccCCccccccchhHHHhhhhhhccccccccccccccccccccccc-ccchhh
Confidence 233455566667799999855 778999999885554332 22333333333221111 11111111111 111223
Q ss_pred CCchhhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHH
Q 008816 309 PDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEE 388 (552)
Q Consensus 309 ~~~~~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~ 388 (552)
..+..++||+ +|+++.|++.|.++|+.|++++|++|||.+||++++|++||++|...|.|+++++|+++...++++|++
T Consensus 273 ~~k~~g~aFg-~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~d 351 (587)
T KOG0781|consen 273 TKKTVGGAFG-LFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRD 351 (587)
T ss_pred hhcchhhHHH-HHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 3445567776 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHH
Q 008816 389 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARR 468 (552)
Q Consensus 389 ~L~~il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~ 468 (552)
+|++||+|.+++|+|++|.-...+++||+|+|||+|||||||+|++||+||.+++.+|+|++|||||.||+|||++|.++
T Consensus 352 aLvQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~r 431 (587)
T KOG0781|consen 352 ALVQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVER 431 (587)
T ss_pred HHHHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred c------CCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEE
Q 008816 469 L------QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFV 532 (552)
Q Consensus 469 l------~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~ 532 (552)
+ .|++|++||+.|++.++++||++|..+++||||||||||||++++||..|.+++.+....+.+
T Consensus 432 l~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~ 501 (587)
T KOG0781|consen 432 LSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLIL 501 (587)
T ss_pred HHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEE
Confidence 8 789999999999999999999999999999999999999999999999999998765554443
No 2
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=100.00 E-value=1.2e-39 Score=332.92 Aligned_cols=115 Identities=53% Similarity=0.838 Sum_probs=71.0
Q ss_pred CCcHHHHHHHhhhhcccCCCceeeccCCCceeeEEEEecccceEEEEEeccccchhhHHHHHHHHHHHHHHhcCCcCC--
Q 008816 27 GSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRT-- 104 (552)
Q Consensus 27 ~~~in~lI~~vlleer~~~~~~~~~~~~~~y~lkw~~~ne~~Lvfv~vyq~il~l~yvd~ll~~v~~~F~~~y~~~~~-- 104 (552)
++|||+||++||||||+++.+|.| |+|+|||+|+||||||||||||+||||+|||+||++|+++|+++|++.+.
T Consensus 1 ~~~in~LI~~vlleeR~~~~~~~~----d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~ 76 (279)
T PF04086_consen 1 TSPINALIRDVLLEERSGNSSFTY----DNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQL 76 (279)
T ss_dssp --HHHHHHHHTGGG-----------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSS
T ss_pred CchHHHHHHHhheeeccCCCceeE----cCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 489999999999999999999999 99999999999999999999999999999999999999999999988631
Q ss_pred -------CCcchHHHHHHHHHHHHHHHHHHhhhhcccccccccccccC
Q 008816 105 -------DYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGG 145 (552)
Q Consensus 105 -------~~~~f~~~f~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 145 (552)
.|++|+++|+++|+++|+++...++....|++|+++.+++.
T Consensus 77 ~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~~~~~~~~~~~~s~k~~~ 124 (279)
T PF04086_consen 77 KPNTSINEYFDFDEEFDQLLKELEARSKSQKRSPKAMRSFEESKKSKK 124 (279)
T ss_dssp STHHHHT-----HHHHHHHHHHHCCCTT--------------------
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 46799999999999999988765566667889988777654
No 3
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-34 Score=293.05 Aligned_cols=192 Identities=39% Similarity=0.551 Sum_probs=169.1
Q ss_pred cCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HcCCCCCCccchhHHHHHHHHHHHHHHhCCCCccccccccc
Q 008816 329 NLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAAS-LEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH 407 (552)
Q Consensus 329 ~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~-l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~ 407 (552)
.+.+.+.++++++|++.|+++||+.++++.||+.++.. ...+.+.+ ...++.+|.+.|..++.|....+....+
T Consensus 59 ~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~~----~~~v~~~l~~~l~~il~~~~~~~~~~~~- 133 (340)
T COG0552 59 KIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKIKD----EETVKEALREALIEILRPVDKVDLPLEI- 133 (340)
T ss_pred ccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccCCC----HHHHHHHHHHHHHHHhcccccccchhhh-
Confidence 44566778899999999999999999999999999986 33333322 6788999999999999976554332222
Q ss_pred ccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHH
Q 008816 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (552)
Q Consensus 408 ~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar 487 (552)
...++|++|+|||+||+||||++++||+++...|.+|+|++|||||++|+|||+.|++++|++++...++.||+.+++
T Consensus 134 --~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVaf 211 (340)
T COG0552 134 --PKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAF 211 (340)
T ss_pred --ccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHH
Confidence 235679999999999999999999999999999999999999999999999999999999999998779999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhc
Q 008816 488 EAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTV 527 (552)
Q Consensus 488 ~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~ 527 (552)
+||..|..+++|+||||||||+|++.+||.||.||..+..
T Consensus 212 DAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~ 251 (340)
T COG0552 212 DAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIK 251 (340)
T ss_pred HHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987653
No 4
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-33 Score=293.20 Aligned_cols=216 Identities=27% Similarity=0.445 Sum_probs=195.1
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~ 392 (552)
++..|++.++++.|...+++++++.++++++.+|+++||+..++..|+++|++++.|..+..-.++.+.+..+++++|++
T Consensus 5 L~~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~ 84 (451)
T COG0541 5 LSDRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVK 84 (451)
T ss_pred HHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999999999988765555667777899999999
Q ss_pred HhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCc
Q 008816 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (552)
Q Consensus 393 il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~ 472 (552)
+|+.. .. .++ +....|.+|++||..|+||||++++||.||...+.+|++++||+||++|++||++++++.+++
T Consensus 85 llG~~-~~----~~~--l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 85 LLGGE-NS----ELN--LAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred HhCCC-Cc----ccc--cCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 99962 11 122 335678999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 473 ~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
+|..+.+.+|..+++.++..|....+|+||||||||+|.++.+|+||..|..+..+...+.++
T Consensus 158 ~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVv 220 (451)
T COG0541 158 FFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVV 220 (451)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEE
Confidence 998878899999999999999999999999999999999999999999999887766555554
No 5
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.97 E-value=4.4e-30 Score=274.73 Aligned_cols=216 Identities=23% Similarity=0.406 Sum_probs=190.3
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~ 392 (552)
++..|++.|+++.|.+.|+++++++++++|+.+|+++||+.+++..|+++|++.+.|.++.........+...+.+.|++
T Consensus 5 L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~ 84 (429)
T TIGR01425 5 LGSSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCN 84 (429)
T ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999999998888766666677888999999999
Q ss_pred HhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCc
Q 008816 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (552)
Q Consensus 393 il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~ 472 (552)
++.+.... +....++|++|+|+|++||||||++++||.++...|.+|+++++|+||++|.+||+.++++.++|
T Consensus 85 ~l~~~~~~-------~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 85 LVDPGVEA-------FTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred HhCCCCcc-------ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 99864321 22345668899999999999999999999999988999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 473 ~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
++......+|..+++.++..+...++|+||||||||++.+..+|++|.++.....+...+.++
T Consensus 158 ~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVl 220 (429)
T TIGR01425 158 FYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVM 220 (429)
T ss_pred EEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEe
Confidence 987666778999999999998888999999999999999999999999998665444333333
No 6
>PRK14974 cell division protein FtsY; Provisional
Probab=99.97 E-value=1e-28 Score=257.99 Aligned_cols=216 Identities=40% Similarity=0.596 Sum_probs=185.5
Q ss_pred hhhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHH
Q 008816 312 KKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALV 391 (552)
Q Consensus 312 ~~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~ 391 (552)
...|||.++... .|+++++++.+++|+.+|+++||+.++++.|++.+++.+.|.++..+......++.++.+.|.
T Consensus 45 ~~~~~~~~~~~~-----~~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 119 (336)
T PRK14974 45 EKPGFFDKAKIT-----EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALL 119 (336)
T ss_pred cccCHHHHHHhc-----ccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHH
Confidence 356888866533 389999999999999999999999999999999999999998888777778888999999999
Q ss_pred HHhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCC
Q 008816 392 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 471 (552)
Q Consensus 392 ~il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v 471 (552)
+++.+....+.+..+ ...++|++|+|+|+||+||||++++||.++...|.+|+++++|+||.++.+||+.|++.+++
T Consensus 120 ~~l~~~~~~~~~~~~---~~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 120 EVLSVGDLFDLIEEI---KSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred HHhCCCcchhhhhhh---hccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCC
Confidence 999764322222111 13456889999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 472 ~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
+++...++.+|..+++.++..+...++|+|||||||+++.+..+|.+|.++.........+.++
T Consensus 197 ~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl 260 (336)
T PRK14974 197 KVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVG 260 (336)
T ss_pred ceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEee
Confidence 9988888889999999999988888999999999999999999999999997655444434443
No 7
>PRK10867 signal recognition particle protein; Provisional
Probab=99.97 E-value=9.5e-29 Score=265.66 Aligned_cols=216 Identities=31% Similarity=0.477 Sum_probs=187.5
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~ 392 (552)
++..|++.++++.|.+.++++++++.+++++.+|+++||+.+++..|++.|++.+.+.++....+..+.+..++.++|.+
T Consensus 5 l~~~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~ 84 (433)
T PRK10867 5 LSDRLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVE 84 (433)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999988877655444566788899999999
Q ss_pred HhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-CceEEEeeecCCcchHHHHHHHHHHHcCC
Q 008816 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQV 471 (552)
Q Consensus 393 il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-ggkVll~~~D~~r~ga~eqL~~~~~~l~v 471 (552)
++.+... .+ .+..+.|.+|+|+|++||||||++++||.++... |.+|+++++|+||+++++||+.|++..++
T Consensus 85 ~l~~~~~-----~~--~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv 157 (433)
T PRK10867 85 ILGGENS-----EL--NLAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGV 157 (433)
T ss_pred HhCCCcc-----ee--eecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCC
Confidence 9975321 12 2335668899999999999999999999999888 89999999999999999999999999999
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 472 ~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
+++..+...+|..+++.++..+...++|+||||||||++.+..+|++|..+.........+.++
T Consensus 158 ~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVl 221 (433)
T PRK10867 158 PVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVV 221 (433)
T ss_pred eEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEE
Confidence 9987767789999999999888888999999999999999999999999998765554444444
No 8
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.6e-28 Score=250.33 Aligned_cols=214 Identities=28% Similarity=0.464 Sum_probs=193.4
Q ss_pred hhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHH
Q 008816 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (552)
Q Consensus 314 ~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~i 393 (552)
.+.+.+.|+.+.....+++..|+.+|++|+.+|+++||++.++.+|.++|++.+...++..--.....|.+++.++|+++
T Consensus 7 GrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl 86 (483)
T KOG0780|consen 7 GRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKL 86 (483)
T ss_pred chhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHH
Confidence 45667778788888889999999999999999999999999999999999999888777655556788999999999999
Q ss_pred hCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCce
Q 008816 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 473 (552)
Q Consensus 394 l~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~ 473 (552)
+.|... .|....++|.||+|||.+|+||||+|.++|+++...|.++++++.|+||++|.+||++++.+.++|+
T Consensus 87 ~dp~~~-------~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ 159 (483)
T KOG0780|consen 87 LDPGKS-------ALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPF 159 (483)
T ss_pred hCCCCc-------ccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCee
Confidence 998544 3456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEE
Q 008816 474 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNI 534 (552)
Q Consensus 474 ~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~i 534 (552)
|..+...+|+.++.+++.++...+||+||+||.||++.+..+++|+..+.........+-+
T Consensus 160 ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~V 220 (483)
T KOG0780|consen 160 YGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFV 220 (483)
T ss_pred EecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEE
Confidence 9888889999999999999999999999999999999999999999999877665544433
No 9
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.96 E-value=9.9e-28 Score=257.66 Aligned_cols=216 Identities=26% Similarity=0.458 Sum_probs=187.1
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~ 392 (552)
++..|+++++++.|.+.++++++++.+++|+.+|+++||+.+++..|++.|++.+.|.++.........+...+.++|++
T Consensus 4 L~~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ 83 (428)
T TIGR00959 4 LSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVA 83 (428)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHH
Confidence 46678889999999999999999999999999999999999999999999999988877654444556677899999999
Q ss_pred HhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-hCCceEEEeeecCCcchHHHHHHHHHHHcCC
Q 008816 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQV 471 (552)
Q Consensus 393 il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v 471 (552)
++.+... .+....+.|++++|+|++|+||||++++||.++. ..|.+|++++||+||+++.+||+.+++..++
T Consensus 84 ~l~~~~~-------~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gv 156 (428)
T TIGR00959 84 ILGGENA-------SLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGV 156 (428)
T ss_pred HhCCCCc-------ccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCC
Confidence 9986421 1223356789999999999999999999999876 5789999999999999999999999999999
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 472 ~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
+++......+|..+++.++..+...++|+|||||||+++.+..+|.+|.++.....+...+.++
T Consensus 157 p~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVv 220 (428)
T TIGR00959 157 PVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVV 220 (428)
T ss_pred ceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEE
Confidence 9987666788999998899888889999999999999999999999999998766554444444
No 10
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.95 E-value=1.7e-26 Score=248.75 Aligned_cols=211 Identities=24% Similarity=0.364 Sum_probs=179.8
Q ss_pred hHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHh
Q 008816 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (552)
Q Consensus 315 ~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il 394 (552)
..|++.|+++.|.+.|+++++++++++++.+|+++||+.+++++|++.|++.+.+..+.........+...+.++|.+++
T Consensus 3 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l 82 (437)
T PRK00771 3 ESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLL 82 (437)
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHh
Confidence 45677889999999999999999999999999999999999999999999998887665444455666789999999999
Q ss_pred CCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCcee
Q 008816 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (552)
Q Consensus 395 ~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~ 474 (552)
++.... +. .. +.|.+|+|+|++|+||||++++||.++...|.+|+++++|+||+++.+||+.+++.++++++
T Consensus 83 ~~~~~~-----~~--~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~ 154 (437)
T PRK00771 83 GEETEP-----LV--LP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY 154 (437)
T ss_pred CCCccc-----cc--cC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 764321 11 12 46889999999999999999999999998899999999999999999999999999999988
Q ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 475 ~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
......+|..+++.++..+. ++|+|||||||+++.+..+|++|..+.....+...+.++
T Consensus 155 ~~~~~~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVv 213 (437)
T PRK00771 155 GDPDNKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVI 213 (437)
T ss_pred ecCCccCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEE
Confidence 66556788888888888763 469999999999999999999999997765554444444
No 11
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.95 E-value=4.1e-26 Score=237.29 Aligned_cols=191 Identities=34% Similarity=0.505 Sum_probs=161.2
Q ss_pred HHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCc
Q 008816 320 MFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRS 399 (552)
Q Consensus 320 ~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~ 399 (552)
-+.++.+.+.++++ .+++++++|+++||+++++++|++.++..+.+....+ ...++..+.+.|.+++.+...
T Consensus 34 ~~~~l~~~~~~~~~----~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~ 105 (318)
T PRK10416 34 GINGLFAKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKRKNLKD----PEELKELLKEELAEILEPVEK 105 (318)
T ss_pred HHHHHhCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHHHhCcCCc
Confidence 34455556677775 4579999999999999999999999998876655432 345778888999999874221
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCC
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~ 479 (552)
.+. ...++|.+|+|+||||+||||++++||+++.+.|++|+++++|+||.++++|+..|+.+.+++++....+
T Consensus 106 -----~~~--~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~ 178 (318)
T PRK10416 106 -----PLN--IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEG 178 (318)
T ss_pred -----ccc--ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCC
Confidence 112 2334567999999999999999999999999999999999999999999999999999999999887778
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhh
Q 008816 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLH 525 (552)
Q Consensus 480 ~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~ 525 (552)
.+|...++.++..+...++|+|||||||+++.+..+|++|.++..+
T Consensus 179 ~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v 224 (318)
T PRK10416 179 ADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRV 224 (318)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 8898888888888888999999999999999999999999998754
No 12
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.94 E-value=8.8e-25 Score=222.89 Aligned_cols=183 Identities=39% Similarity=0.525 Sum_probs=155.6
Q ss_pred chHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccCC
Q 008816 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR 413 (552)
Q Consensus 334 ~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g 413 (552)
.+++++++|+..|+++||+++++++|++++.+.+.+.+.... ..+...+.+.|.+++.+... .+....+
T Consensus 2 ~~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~e~l~~~~~~~~~-------~~~~~~~ 70 (272)
T TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDA----ELLKEILKEYLKEILKETDL-------ELIVEEN 70 (272)
T ss_pred ccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCH----HHHHHHHHHHHHHHHcccch-------hhcccCC
Confidence 356789999999999999999999999999998877665532 34556777888888764211 1222345
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a 493 (552)
++++|+|+||+|+||||++++||.++...|++|+++++|+||.++.+||+.|+++.+++++......+|...+..++..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999887777788988888888888
Q ss_pred HhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhc
Q 008816 494 TRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTV 527 (552)
Q Consensus 494 ~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~ 527 (552)
...++|+|||||||+++.+..+|++|.++.....
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~ 184 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIK 184 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999986544
No 13
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.88 E-value=5.4e-22 Score=193.25 Aligned_cols=121 Identities=38% Similarity=0.502 Sum_probs=106.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
|++|+||||+||||||+++|||.++...+.+|.++++|+||.||++||+.|++.+++|++......+|..+++.++..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 78999999999999999999999998889999999999999999999999999999999887777789999999999888
Q ss_pred hCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 495 RNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 495 ~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
..++|+|||||||+++.+..++++|.++...........++
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVl 121 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVL 121 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEE
Confidence 88999999999999999999999999988766444333333
No 14
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.85 E-value=3.7e-20 Score=209.34 Aligned_cols=176 Identities=27% Similarity=0.312 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccCCCc
Q 008816 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (552)
Q Consensus 336 ~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g~p 415 (552)
+|...++++.|++.||+.+++++|++.+.... . ...+...+.+.|.+.+. ++.+.++.+..|+
T Consensus 124 ~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~---------~-~~~~~~~l~~~L~~~l~------il~~~~~~~~~g~- 186 (767)
T PRK14723 124 DPLRASLFRWLLGAGFSGQLARALLERLPVGY---------D-RPAAMAWIRNELATHLP------VLRDEDALLAQGG- 186 (767)
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC---------C-HHHHHHHHHHHHHHHhh------hccCCCcccCCCe-
Confidence 56778899999999999999999999986421 1 12355667777777663 2334455455555
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHh-hCC-ceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLL-QHK-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~-~~g-gkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a 493 (552)
+|+|||||||||||++++||+++. ..| .+|.++++|+||+++++||+.|++.++++++.. .++..+ +.++..
T Consensus 187 -Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~---~~~~~l-~~al~~- 260 (767)
T PRK14723 187 -VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAV---KDAADL-RFALAA- 260 (767)
T ss_pred -EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcccc---CCHHHH-HHHHHH-
Confidence 999999999999999999998885 455 499999999999999999999999999988642 356664 567765
Q ss_pred HhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 494 TRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 494 ~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
..++|+||||||||++.+..+|+++.++.........+.++
T Consensus 261 -~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVL 301 (767)
T PRK14723 261 -LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLL 301 (767)
T ss_pred -hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEE
Confidence 46889999999999999999999999987544333344444
No 15
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.85 E-value=1e-19 Score=191.91 Aligned_cols=173 Identities=20% Similarity=0.258 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccCCCcE
Q 008816 337 PALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 416 (552)
Q Consensus 337 ~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g~p~ 416 (552)
..+..+.+.|++.+|.++++..|++.+..........+ ...+...+.+.|..++.... . ....|+
T Consensus 178 ~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~-------~----~~~~~~ 242 (436)
T PRK11889 178 FIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMIT----EEEVIEYILEDMRSHFNTEN-------V----FEKEVQ 242 (436)
T ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCC----HHHHHHHHHHHHHHHhcccc-------c----cccCCc
Confidence 34556889999999999999999999876543322211 23344555666666664311 0 122356
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh-
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR- 495 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~- 495 (552)
+|+|+|||||||||++++||..+...|.+|.++++|+||.++++||+.|++.++++++.. .++..+. .+|..+..
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~---~d~~~L~-~aL~~lk~~ 318 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAMT-RALTYFKEE 318 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEec---CCHHHHH-HHHHHHHhc
Confidence 999999999999999999999999889999999999999999999999999999998742 4666665 56766543
Q ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHhhhhcc
Q 008816 496 NGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVC 528 (552)
Q Consensus 496 ~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~ 528 (552)
.++|+|||||||+++.+..+|++|..+......
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~P 351 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEP 351 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCC
Confidence 479999999999999999999999988764433
No 16
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.84 E-value=2.4e-19 Score=191.05 Aligned_cols=182 Identities=25% Similarity=0.368 Sum_probs=140.9
Q ss_pred CCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccc
Q 008816 327 KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDV 406 (552)
Q Consensus 327 ~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di 406 (552)
.++|+++++.+.+..+++.|++.||+.+++++|++.+...+.+.....+ ..+...+.+.|.+.+.... +.+..
T Consensus 145 ~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~----~~~~~~l~~~L~~~l~~~~--~~~~~- 217 (432)
T PRK12724 145 ETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRN----HNVTERAVTYLEERVSVDS--DLFSG- 217 (432)
T ss_pred cccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccch----HHHHHHHHHHHHHhcccch--hhhhh-
Confidence 5678999999999999999999999999999999999987766554432 2344556666766664321 11110
Q ss_pred cccccCCCcEEEEEEcCCCCChhHHHHHHHHHH-hhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHH
Q 008816 407 HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIV 485 (552)
Q Consensus 407 ~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l-~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~i 485 (552)
....++.+++|+||+||||||++.+||..+ ...|.+|.++++|+||.++.+|++.|++.++++++.. .++
T Consensus 218 ---~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~--- 288 (432)
T PRK12724 218 ---TGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDI--- 288 (432)
T ss_pred ---cccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHH---
Confidence 011335699999999999999999999755 5678899999999999999999999999999987532 112
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhh
Q 008816 486 AKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLH 525 (552)
Q Consensus 486 ar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~ 525 (552)
..+...+...++|+|||||||+++.+...+++|.++...
T Consensus 289 -~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 289 -KKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHh
Confidence 223333334789999999999999999999999998754
No 17
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.83 E-value=3.7e-19 Score=189.44 Aligned_cols=172 Identities=22% Similarity=0.290 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccCCCc
Q 008816 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (552)
Q Consensus 336 ~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g~p 415 (552)
.+.++++++.|++.||+++++++|++.+...+....... ...+++.+.+.|.+.+...... .....|
T Consensus 108 ~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~----~~~v~~~l~~~l~~~i~~~~~~---------~~~~~~ 174 (388)
T PRK12723 108 HPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDD----YDKVRDSVIIYIAKTIKCSGSI---------IDNLKK 174 (388)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCC----HHHHHHHHHHHHHHHhhccCcc---------ccCCCC
Confidence 467889999999999999999999999988764443322 2345555555566655321110 112346
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhh----CCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~----~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa 491 (552)
.+|+|+||||+||||++++||.++.. .+.+|.++++|+||.++.+||+.|++.+++|+... .++..+ ..++.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~---~~~~~l-~~~L~ 250 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAI---ESFKDL-KEEIT 250 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEee---CcHHHH-HHHHH
Confidence 79999999999999999999988763 47899999999999999999999999999997542 233333 34444
Q ss_pred HHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhh
Q 008816 492 EATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHT 526 (552)
Q Consensus 492 ~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~ 526 (552)
. ..++|+|||||||+++.+...+.+|..+....
T Consensus 251 ~--~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 251 Q--SKDFDLVLVDTIGKSPKDFMKLAEMKELLNAC 283 (388)
T ss_pred H--hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhc
Confidence 4 47899999999999998877788888876543
No 18
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.83 E-value=2.2e-19 Score=188.81 Aligned_cols=170 Identities=25% Similarity=0.299 Sum_probs=134.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccCCCcEEEE
Q 008816 340 KALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVV 419 (552)
Q Consensus 340 ~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g~p~vI~ 419 (552)
.++.+.|.+.||..+++..|++.+...+......++ ..+...+.+.|.+.+.... .+.+..+ ++++
T Consensus 145 ~~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~~----~~v~~~~~~~L~~~l~~~~--------~~~~~~~--~ii~ 210 (407)
T PRK12726 145 SDFVKFLKGRGISDTYVADFMQAGRKQFKQVETAHL----DDITDWFVPYLSGKLAVED--------SFDLSNH--RIIS 210 (407)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccH----HHHHHHHHHHhcCcEeeCC--------CceecCC--eEEE
Confidence 388999999999999999999999776444332222 3454555566655554321 1223344 4999
Q ss_pred EEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH-hCCC
Q 008816 420 FVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT-RNGS 498 (552)
Q Consensus 420 lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~-~~~~ 498 (552)
|+||+||||||++++||.++...+.+|.++++|+||.+|++||+.|++.++++++. ..+|..+ ..++..+. ..++
T Consensus 211 lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~---~~dp~dL-~~al~~l~~~~~~ 286 (407)
T PRK12726 211 LIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV---ATSPAEL-EEAVQYMTYVNCV 286 (407)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEe---cCCHHHH-HHHHHHHHhcCCC
Confidence 99999999999999999998888999999999999999999999999999999864 3567776 56776653 3679
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHhhhhc
Q 008816 499 DVVLVDTAGRMQVIIEYYLFLLHIYLHTV 527 (552)
Q Consensus 499 DvVIIDtpGr~~~~~~lm~eL~kl~~~~~ 527 (552)
|+|||||||+++.+..+|.+|..+.....
T Consensus 287 D~VLIDTAGr~~~d~~~l~EL~~l~~~~~ 315 (407)
T PRK12726 287 DHILIDTVGRNYLAEESVSEISAYTDVVH 315 (407)
T ss_pred CEEEEECCCCCccCHHHHHHHHHHhhccC
Confidence 99999999999999999999999875543
No 19
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.83 E-value=4.1e-19 Score=193.15 Aligned_cols=186 Identities=23% Similarity=0.282 Sum_probs=132.5
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~ 392 (552)
+.+.|...+.++.. .......|.+.+++++|++.||+.+++++|++.+...... ..+...+.+.|.+
T Consensus 175 lr~~l~~~~~~l~~---~~~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~----------~~~~~~l~~~l~~ 241 (484)
T PRK06995 175 LRGMLEEQLASLAW---GERQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDA----------EAALDWVQSALAK 241 (484)
T ss_pred HHHHHHHHHHHHhc---cccccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhch----------hHHHHHHHHHHHH
Confidence 34555555555432 2223346888999999999999999999999999765321 1223444455555
Q ss_pred HhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-CC-ceEEEeeecCCcchHHHHHHHHHHHcC
Q 008816 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HK-VSVMMAACDTFRSGAVEQLRTHARRLQ 470 (552)
Q Consensus 393 il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-~g-gkVll~~~D~~r~ga~eqL~~~~~~l~ 470 (552)
.+.. +.+.++.+..|. +|+||||||||||||+++||+++.. .| .+|.++++|+||.++.+||+.|++.++
T Consensus 242 ~l~~------~~~~~~~~~~g~--Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG 313 (484)
T PRK06995 242 NLPV------LDSEDALLDRGG--VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG 313 (484)
T ss_pred HHhh------ccCccccccCCc--EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC
Confidence 5432 222333344555 9999999999999999999998854 44 489999999999999999999999999
Q ss_pred CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhh
Q 008816 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLH 525 (552)
Q Consensus 471 v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~ 525 (552)
+++.... ++.... +......++|+++|||+|+++.+..+++.+..+...
T Consensus 314 Vpv~~~~---~~~Dl~---~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~ 362 (484)
T PRK06995 314 VPVHAVK---DAADLR---LALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGA 362 (484)
T ss_pred CCeeccC---CchhHH---HHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhcc
Confidence 9876432 222222 223345788999999999999887777777666533
No 20
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.82 E-value=9.6e-19 Score=188.80 Aligned_cols=170 Identities=33% Similarity=0.403 Sum_probs=135.4
Q ss_pred ChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccc
Q 008816 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAK 410 (552)
Q Consensus 331 ~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~ 410 (552)
....++|.+..+++.|++.||+++++.+|++.+......... .+...+.+.|.+++..... + + +
T Consensus 155 ~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~-~------~-~ 218 (424)
T PRK05703 155 QVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVE-D------I-L 218 (424)
T ss_pred ccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccc-c------c-c
Confidence 445778899999999999999999999999999776432211 3556777888888864321 1 1 2
Q ss_pred cCCCcEEEEEEcCCCCChhHHHHHHHHHHh--hCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHH
Q 008816 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 488 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTll~kLA~~l~--~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~ 488 (552)
..|+ +++|+||+||||||++.+||..+. ..+.+|.++++|+||.++++||+.|++.+++++... .++..+. .
T Consensus 219 ~~~~--~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~---~~~~~l~-~ 292 (424)
T PRK05703 219 KQGG--VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVV---YDPKELA-K 292 (424)
T ss_pred cCCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEcc---CCHHhHH-H
Confidence 3455 999999999999999999998887 457899999999999999999999999999998642 2333333 3
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 489 AIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 489 aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
++.. ..++|+|||||||+.+.+...+.+|..++.
T Consensus 293 ~l~~--~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 293 ALEQ--LRDCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred HHHH--hCCCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 4443 357999999999999999999999999876
No 21
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.80 E-value=2.1e-18 Score=181.72 Aligned_cols=116 Identities=39% Similarity=0.463 Sum_probs=96.7
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHh--hCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHH
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~--~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~a 489 (552)
+++ +|+||||+|||||||+++||..+. ....+|.|+..|+||.||+|||++|++.+++|+.. ..+|.++. .+
T Consensus 202 ~~~--vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v---v~~~~el~-~a 275 (407)
T COG1419 202 QKR--VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV---VYSPKELA-EA 275 (407)
T ss_pred cCc--EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE---ecCHHHHH-HH
Confidence 355 999999999999999999998776 66789999999999999999999999999999864 34566664 34
Q ss_pred HHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 490 IQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 490 Ia~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
|.. ..++|+|||||+||++.|...+.+|..+......-+...++
T Consensus 276 i~~--l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvl 319 (407)
T COG1419 276 IEA--LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVL 319 (407)
T ss_pred HHH--hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEE
Confidence 443 57899999999999999999999999988665444444444
No 22
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.79 E-value=7.3e-18 Score=178.41 Aligned_cols=181 Identities=20% Similarity=0.239 Sum_probs=130.1
Q ss_pred chHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccCC
Q 008816 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR 413 (552)
Q Consensus 334 ~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g 413 (552)
...|....+.++|+..||++.+++.|++.+..... ..+. ......+...|... +.+++..++.+..|
T Consensus 71 ~~~p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~---~~~~----~~~~~~~~~~l~~~------l~~~~~~~~~~~~g 137 (374)
T PRK14722 71 RRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEG---YDTL----DAAADWAQSVLAAN------LPVLDSEDALMERG 137 (374)
T ss_pred ccCcHHHHHHHHHHHCCCCHHHHHHHHHhhhhhcc---cCCH----HHHHHHHHHHHHhc------chhhcCCCccccCC
Confidence 34577789999999999999999999998865211 1111 11222222222222 23344455556677
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHh-hCC-ceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLL-QHK-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~-~~g-gkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa 491 (552)
. +++|+|||||||||++++||..+. ..| .+|.++.+|+||.++++||+.|++.+++++.......+.. .++.
T Consensus 138 ~--ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~----~~l~ 211 (374)
T PRK14722 138 G--VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ----LALA 211 (374)
T ss_pred c--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH----HHHH
Confidence 7 999999999999999999998765 345 5899999999999999999999999999987543333322 2333
Q ss_pred HHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 492 EATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 492 ~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
...++|+|||||||+.+.+..+++++..+.........+.++
T Consensus 212 --~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVL 253 (374)
T PRK14722 212 --ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLL 253 (374)
T ss_pred --HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEe
Confidence 357899999999999999999999999886443333333444
No 23
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.75 E-value=8.6e-17 Score=172.63 Aligned_cols=169 Identities=24% Similarity=0.264 Sum_probs=124.7
Q ss_pred hchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccC
Q 008816 333 ADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQ 412 (552)
Q Consensus 333 ~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~ 412 (552)
....|....+.++|++.||+++++.+|++.+....... .....++..|.+.|..+ .. . ++ +..
T Consensus 128 ~~~~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~------~~~~~~~~~l~~~l~~~-~~--~-~~-------~~~ 190 (420)
T PRK14721 128 SQRDPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRDFE------QSLKKTISLLTLNLRTI-GG--D-EI-------IEQ 190 (420)
T ss_pred cccCcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHhc-CC--c-cc-------cCC
Confidence 34456668899999999999999999999987653211 12233444444444321 11 0 11 235
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHHHHHh-hC-CceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHH
Q 008816 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLL-QH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490 (552)
Q Consensus 413 g~p~vI~lvG~nGvGKTTll~kLA~~l~-~~-ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aI 490 (552)
|+ +|+||||||||||||+++||+.+. .. +.+|.++.+|+||.++.+|+..+++.+|+++... .++.... .++
T Consensus 191 g~--vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v---~~~~dl~-~al 264 (420)
T PRK14721 191 GG--VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSI---KDIADLQ-LML 264 (420)
T ss_pred Cc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecC---CCHHHHH-HHH
Confidence 65 999999999999999999998653 22 4689999999999999999999999999998642 3344432 233
Q ss_pred HHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhh
Q 008816 491 QEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHT 526 (552)
Q Consensus 491 a~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~ 526 (552)
. ...++|+|+|||+|+.+.+..++++|..+....
T Consensus 265 ~--~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~ 298 (420)
T PRK14721 265 H--ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCG 298 (420)
T ss_pred H--HhcCCCEEEecCCCCCcchHHHHHHHHHHhccC
Confidence 3 357899999999999999999999999986543
No 24
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.74 E-value=7.6e-17 Score=165.48 Aligned_cols=150 Identities=34% Similarity=0.490 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccCC
Q 008816 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR 413 (552)
Q Consensus 334 ~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g 413 (552)
...|.+.+++++|++.||+.+++++|++.+... .+ ...+...+.+.|.+.+..... ...+ ...
T Consensus 131 ~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~---------~~-~~~~~~~~~~~l~~~l~~~~~-----~~~~-~~~- 193 (282)
T TIGR03499 131 QRDPEGAKLLERLLRAGVSPELARELLEKLPER---------AD-AEDAWRWLREALEKMLPVKPE-----EDEI-LEQ- 193 (282)
T ss_pred ccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhcc---------CC-HHHHHHHHHHHHHHHhccCCc-----cccc-cCC-
Confidence 456788999999999999999999999988642 11 233456677888888752111 0111 123
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhC-C-ceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQH-K-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~-g-gkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa 491 (552)
+++|+|+||+||||||++.+||.++... | .+|.++++|+||.++++||..|++.+++++.. ..++..+ ..++.
T Consensus 194 -~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~---~~~~~~l-~~~l~ 268 (282)
T TIGR03499 194 -GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKV---ARDPKEL-RKALD 268 (282)
T ss_pred -CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceec---cCCHHHH-HHHHH
Confidence 4599999999999999999999988865 4 89999999999999999999999999998854 2345444 35555
Q ss_pred HHHhCCCCEEEEeCCC
Q 008816 492 EATRNGSDVVLVDTAG 507 (552)
Q Consensus 492 ~a~~~~~DvVIIDtpG 507 (552)
.. .++|+|||||||
T Consensus 269 ~~--~~~d~vliDt~G 282 (282)
T TIGR03499 269 RL--RDKDLILIDTAG 282 (282)
T ss_pred Hc--cCCCEEEEeCCC
Confidence 43 579999999998
No 25
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.73 E-value=2.2e-16 Score=172.18 Aligned_cols=191 Identities=20% Similarity=0.228 Sum_probs=136.6
Q ss_pred hchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccC
Q 008816 333 ADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQ 412 (552)
Q Consensus 333 ~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~ 412 (552)
..-+|.-..+.++|++.||+.+++..|++.+..... . ......+.+.|.+.+.- ...+. +..
T Consensus 288 ~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~------~----~~~~~~l~~~L~~~l~v-~~~~~-------l~~ 349 (559)
T PRK12727 288 LRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADTE------L----HRGRGLMLGLLSKRLPV-APVDP-------LER 349 (559)
T ss_pred hccChHHHHHHHHHHHCCCCHHHHHHHHHhhhcccc------h----hhHHHHHHHHHHHhcCc-Ccccc-------ccC
Confidence 444578888999999999999999999998865321 0 11123344555555531 11111 245
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHHHHHhhC--CceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHH
Q 008816 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490 (552)
Q Consensus 413 g~p~vI~lvG~nGvGKTTll~kLA~~l~~~--ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aI 490 (552)
|+ +|+|+||+|+||||++.+|+.++... +++|.++++|+||.++.+|++.+++.+++++... .++..+ ...+
T Consensus 350 G~--vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a---~d~~~L-~~aL 423 (559)
T PRK12727 350 GG--VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEA---DSAESL-LDLL 423 (559)
T ss_pred CC--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEec---CcHHHH-HHHH
Confidence 66 99999999999999999999877654 5789999999999999999999999999887642 233333 3344
Q ss_pred HHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEecCcccHHHHHHH
Q 008816 491 QEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFRGMWSFDCLKRK 549 (552)
Q Consensus 491 a~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~~~f~~~~l~~~ 549 (552)
.. ..++|+|||||||+++.+..++++|..|........++.+....+.-+...++++
T Consensus 424 ~~--l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~ 480 (559)
T PRK12727 424 ER--LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRR 480 (559)
T ss_pred HH--hccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHH
Confidence 43 3679999999999999999999988877654444455455455555555555443
No 26
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.71 E-value=2.9e-16 Score=160.03 Aligned_cols=177 Identities=19% Similarity=0.275 Sum_probs=127.3
Q ss_pred hhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCccccccccccccc
Q 008816 332 KADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKE 411 (552)
Q Consensus 332 ~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~ 411 (552)
.+.+.+.+.+++..|++.||+.+++.++.+.......... +. ...+...+.+.+...+.+. .++ ..
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~---~~--~~~vl~~v~~~l~~~~~~~---~~~------~~ 73 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT---MI--TEEVIEYILEDMSSHFNTE---NVF------EK 73 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCCC---cc--ccHHHHHHhcccEEeeCCc---ccc------cC
Confidence 4567778899999999999999999999986533222111 11 1111111112221111111 011 11
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHH
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa 491 (552)
++. +++|+|+||+||||++.+|++.+...+.+|.++++|.+|.++++|++.+++.++++++.. .++..+. .++.
T Consensus 74 ~~~--~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~---~~~~~l~-~~l~ 147 (270)
T PRK06731 74 EVQ--TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAMT-RALT 147 (270)
T ss_pred CCC--EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec---CCHHHHH-HHHH
Confidence 344 999999999999999999999988888999999999999999999999999999888642 4565553 4565
Q ss_pred HHH-hCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhcc
Q 008816 492 EAT-RNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVC 528 (552)
Q Consensus 492 ~a~-~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~ 528 (552)
.+. ..++|+|||||||+++.+.++|++|.++......
T Consensus 148 ~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~ 185 (270)
T PRK06731 148 YFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEP 185 (270)
T ss_pred HHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC
Confidence 543 2579999999999999999999999998765443
No 27
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.62 E-value=4.2e-15 Score=143.36 Aligned_cols=148 Identities=23% Similarity=0.215 Sum_probs=109.8
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC---------------------cch
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------------------RSG 457 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~---------------------r~g 457 (552)
.+..++|++|.++.|+ |++++|+||+||||+++.||.++.|+.|+|.+.++|+. |..
T Consensus 14 ~v~AvrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT 91 (245)
T COG4555 14 KVQAVRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLT 91 (245)
T ss_pred HHhhhhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhh
Confidence 4457889999999999 99999999999999999999999999999999999975 344
Q ss_pred HHHHHHHHHHHcCCceee-------------------cC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHH
Q 008816 458 AVEQLRTHARRLQVPIFE-------------------KG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYL 517 (552)
Q Consensus 458 a~eqL~~~~~~l~v~~~~-------------------~~-~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~ 517 (552)
+.|.|+.+++..++.-.. .. .+....-..+.+|++|+.++|+++++|+|... .+.....
T Consensus 92 ~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sG-LDi~~~r 170 (245)
T COG4555 92 ARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSG-LDIRTRR 170 (245)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCC-ccHHHHH
Confidence 555566555544322110 00 00111112268999999999999999999854 5666667
Q ss_pred HHHHHhhhhccccEEEEEEecCcccHHHHHHH
Q 008816 518 FLLHIYLHTVCEHFVNIITFRGMWSFDCLKRK 549 (552)
Q Consensus 518 eL~kl~~~~~~~~~~~ii~~~~~f~~~~l~~~ 549 (552)
.+.+++.....+....+.+...+=+...||++
T Consensus 171 ~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 171 KFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred HHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 77777766666666667777777777778775
No 28
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.60 E-value=1.8e-14 Score=136.54 Aligned_cols=120 Identities=39% Similarity=0.586 Sum_probs=102.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~ 495 (552)
|+++|+|++|+||||++.+++..+...+.+|+++++|++|++..+|+..+++..+++++......++..+....+..+..
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999999988899999999999999999999999999999988766667888888777777777
Q ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 496 NGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 496 ~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
.++|+|||||||.++.+...+.++..+.........+.++
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv 120 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVV 120 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEE
Confidence 8999999999999888888899998877654444444444
No 29
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.58 E-value=1.5e-14 Score=145.02 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhCCCC-cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----
Q 008816 384 AAMEEALVRILTPRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----- 457 (552)
Q Consensus 384 ~~l~~~L~~il~~~~-~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----- 457 (552)
..+...|..++.++. +++++.||+|.+++|. +++|+|+||+|||||+.+|.|.+.+.+|+|.+.+.|+|+..
T Consensus 20 pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~--ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~ 97 (325)
T COG4586 20 PGLKGSLNHFFHRKERSIEAVQDISFEIPKGE--IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97 (325)
T ss_pred chhHHHHHhhcCchhhhhhhhheeeeecCCCc--EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH
Confidence 345677777887754 7889999999999999 99999999999999999999999999999999999999621
Q ss_pred -------H----------HHH------------------HHHHHHHcCCc--eeecCCCCCHHHHHHHHHHHHHhCCCCE
Q 008816 458 -------A----------VEQ------------------LRTHARRLQVP--IFEKGYEKDPAIVAKEAIQEATRNGSDV 500 (552)
Q Consensus 458 -------a----------~eq------------------L~~~~~~l~v~--~~~~~~~~dp~~iar~aIa~a~~~~~Dv 500 (552)
. .+. +..+.+.+++. +-.+-...+..+..|.-+++++.++|++
T Consensus 98 ~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~V 177 (325)
T COG4586 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKV 177 (325)
T ss_pred HHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcE
Confidence 0 000 11111222322 1111112233445577788999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHhhh-hccccEEEEEEecCcccHHHHHHH
Q 008816 501 VLVDTAGRMQVIIEYYLFLLHIYLH-TVCEHFVNIITFRGMWSFDCLKRK 549 (552)
Q Consensus 501 VIIDtpGr~~~~~~lm~eL~kl~~~-~~~~~~~~ii~~~~~f~~~~l~~~ 549 (552)
+++|+|+...+- ..-..+...... ........+.+...|-|.-.||++
T Consensus 178 LfLDEpTvgLDV-~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 178 LFLDEPTVGLDV-NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred EEecCCccCcch-hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhh
Confidence 999999976543 332333333322 222334444566677777777776
No 30
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.55 E-value=4.2e-14 Score=137.94 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=88.0
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHH----------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL---------------- 462 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL---------------- 462 (552)
...+|++|++.+.+|+ +++||||+||||||+++||.++-.+++|.|.+.+.++.....+.++
T Consensus 14 ~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH 91 (240)
T COG1126 14 DKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPH 91 (240)
T ss_pred CeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccccccccc
Confidence 4578999999999999 9999999999999999999999999999999988655322111111
Q ss_pred --------------------------HHHHHHcCCceeecCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 463 --------------------------RTHARRLQVPIFEKGY--EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 463 --------------------------~~~~~~l~v~~~~~~~--~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+++|+.-....| ..+-.+-.|.||++|+..+|+++|+|+|+... |.+
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSAL-DPE 170 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL-DPE 170 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccC-CHH
Confidence 1122233333211111 22334445899999999999999999999665 445
Q ss_pred HHHHHHHHhhh
Q 008816 515 YYLFLLHIYLH 525 (552)
Q Consensus 515 lm~eL~kl~~~ 525 (552)
+..+.-.+...
T Consensus 171 lv~EVL~vm~~ 181 (240)
T COG1126 171 LVGEVLDVMKD 181 (240)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 31
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.54 E-value=2.5e-14 Score=144.22 Aligned_cols=126 Identities=19% Similarity=0.123 Sum_probs=89.3
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHH--------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-------------- 464 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~-------------- 464 (552)
...++++++|.+++|+ +++|+|||||||||++++|++++++..|.|.+.+.++.+....+--+.
T Consensus 14 ~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 14 GKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred CeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 3468999999999999 999999999999999999999999999999999998865443331110
Q ss_pred ------------------------------HHHHcCCceeecC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 465 ------------------------------HARRLQVPIFEKG--YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 465 ------------------------------~~~~l~v~~~~~~--~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+.+++.-+... ...+-.+..+..|++|+.++++++|+|||+...|-
T Consensus 92 tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi 171 (258)
T COG1120 92 TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI 171 (258)
T ss_pred EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCH
Confidence 0011111111000 01222333478899999999999999999987776
Q ss_pred HHHHHHHHHHhhhh
Q 008816 513 IEYYLFLLHIYLHT 526 (552)
Q Consensus 513 ~~lm~eL~kl~~~~ 526 (552)
...++.|.-+....
T Consensus 172 ~~Q~evl~ll~~l~ 185 (258)
T COG1120 172 AHQIEVLELLRDLN 185 (258)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555554443
No 32
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.46 E-value=7.6e-13 Score=131.19 Aligned_cols=122 Identities=21% Similarity=0.144 Sum_probs=88.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------- 457 (552)
+.+|++++|.+++|+ +++|+||+||||||++..|+++..+++|.|.+.+.|+....
T Consensus 18 ~~~L~~v~l~i~~Ge--~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGE--FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 678999999999999 99999999999999999999999999999999998865322
Q ss_pred ----HHHHHH------------------HHHHHcCCceee---cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 458 ----AVEQLR------------------THARRLQVPIFE---KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 458 ----a~eqL~------------------~~~~~l~v~~~~---~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
+.|++. .+.+.+|+.-.. ......-.+-.|.||++|+..+|++||.|||+-..+.
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~ 175 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCCh
Confidence 112211 112222332111 1223344555699999999999999999999977666
Q ss_pred HHHHHHHHHHh
Q 008816 513 IEYYLFLLHIY 523 (552)
Q Consensus 513 ~~lm~eL~kl~ 523 (552)
..--..+..+.
T Consensus 176 ~t~~~V~~ll~ 186 (226)
T COG1136 176 KTAKEVLELLR 186 (226)
T ss_pred HHHHHHHHHHH
Confidence 54444443333
No 33
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.46 E-value=4.4e-13 Score=138.45 Aligned_cols=145 Identities=15% Similarity=0.078 Sum_probs=95.6
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------------------chH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------------------SGA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------------------~ga 458 (552)
..+|++|+|.+++|+ +++|+||||||||||+++|++.+.+.+|+|.+.+.|..+ ..+
T Consensus 18 ~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~ 95 (293)
T COG1131 18 KTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTV 95 (293)
T ss_pred CEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccH
Confidence 568999999999999 999999999999999999999999999999999887643 112
Q ss_pred HHHHHHHHHHcC------------------Cceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHH
Q 008816 459 VEQLRTHARRLQ------------------VPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLF 518 (552)
Q Consensus 459 ~eqL~~~~~~l~------------------v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~e 518 (552)
.|.|..++...+ +.-... ....+.....|..|+.|+..+|+++|+|||+...|... ..+
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~-~~~ 174 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES-RRE 174 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHH-HHH
Confidence 333444333333 221000 11122333447889999999999999999997665543 344
Q ss_pred HHHHhhhhcccc-EEEEEEecCcccHHHHH
Q 008816 519 LLHIYLHTVCEH-FVNIITFRGMWSFDCLK 547 (552)
Q Consensus 519 L~kl~~~~~~~~-~~~ii~~~~~f~~~~l~ 547 (552)
+.+++....... ...+++..-.=+...+|
T Consensus 175 ~~~~l~~l~~~g~~tvlissH~l~e~~~~~ 204 (293)
T COG1131 175 IWELLRELAKEGGVTILLSTHILEEAEELC 204 (293)
T ss_pred HHHHHHHHHhCCCcEEEEeCCcHHHHHHhC
Confidence 444433332222 34444444443333333
No 34
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.44 E-value=1.3e-12 Score=123.29 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=81.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 480 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~ 480 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+.......+ .. +..+.+..+ .
T Consensus 14 ~vl~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~----~~-~~~i~~~~q---L 83 (163)
T cd03216 14 KALDGVSLSVRRGE--VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD----AR-RAGIAMVYQ---L 83 (163)
T ss_pred EEEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHH----HH-hcCeEEEEe---c
Confidence 47899999999999 99999999999999999999999999999999887764332211 11 112333322 5
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 481 dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
...+..+.++++|+..+|+++|+|||....+...
T Consensus 84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 84 SVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 6667778999999999999999999997665543
No 35
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=2.8e-13 Score=136.16 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=81.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC------CcchHHHHHHH----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLRT---------- 464 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~------~r~ga~eqL~~---------- 464 (552)
.+|+||+|.+++|+ +++|+||||+||||+++.|.+++++..|+|.+.+... .|.|.+.|-..
T Consensus 18 ~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~ 95 (254)
T COG1121 18 PVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVK 95 (254)
T ss_pred eeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHH
Confidence 58999999999999 9999999999999999999999999999999876542 23344433221
Q ss_pred ---------------------------HHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 465 ---------------------------HARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 465 ---------------------------~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+++|+.-+.. -...+-.+..|..||+|+.++||++|+|||...-|...
T Consensus 96 d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~ 174 (254)
T COG1121 96 DVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174 (254)
T ss_pred HHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHH
Confidence 111222221110 11234445558899999999999999999987666543
No 36
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.43 E-value=5e-13 Score=139.66 Aligned_cols=140 Identities=17% Similarity=0.088 Sum_probs=95.5
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc-------------------------
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------- 456 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------- 456 (552)
+++++++.+.+|+ +++|+||+||||||++++|||+..+++|.|.|.+.|.-..
T Consensus 18 ~l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 7899999999999 9999999999999999999999999999999998875310
Q ss_pred -------------hHHHHHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH---HHHHH
Q 008816 457 -------------GAVEQLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII---EYYLF 518 (552)
Q Consensus 457 -------------ga~eqL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~---~lm~e 518 (552)
...+..+..++.+++.-+-. ....+-.+..|.||++|+..+|+++|+|||-.+.+.. .+..+
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e 175 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHH
Confidence 00112223444555543221 2234445566899999999999999999998766443 23334
Q ss_pred HHHHhhhhccccEEEEEEecCcccHHHH
Q 008816 519 LLHIYLHTVCEHFVNIITFRGMWSFDCL 546 (552)
Q Consensus 519 L~kl~~~~~~~~~~~ii~~~~~f~~~~l 546 (552)
|.++.. .-....|.-+.+.++.+.|
T Consensus 176 i~~lh~---~l~~T~IYVTHDq~EAmtl 200 (338)
T COG3839 176 IKKLHE---RLGTTTIYVTHDQVEAMTL 200 (338)
T ss_pred HHHHHH---hcCCcEEEEcCCHHHHHhh
Confidence 444332 1222333344555555544
No 37
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.41 E-value=1.7e-12 Score=124.19 Aligned_cols=120 Identities=19% Similarity=0.189 Sum_probs=87.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH------HHHHHHHHHHcCCcee
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA------VEQLRTHARRLQVPIF 474 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga------~eqL~~~~~~l~v~~~ 474 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++..... +-.+.++.+.+++.-.
T Consensus 13 ~~l~~~~~~i~~G~--~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 13 TVLDDLSLSIEAGE--IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred eeEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 47899999999999 999999999999999999999999999999998776542211 1111113455555422
Q ss_pred e--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 475 E--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 475 ~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
. ...........+.+|++|+..+|+++|+|+|....+.. ..+.+.+++
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~-~~~~~~~~l 140 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIA-HQIELLELL 140 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH-HHHHHHHHH
Confidence 1 12334566777899999999999999999999766543 344444433
No 38
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.41 E-value=2e-12 Score=128.26 Aligned_cols=125 Identities=15% Similarity=0.108 Sum_probs=91.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec--------------------CCc-----
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD--------------------TFR----- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D--------------------~~r----- 455 (552)
.++++|+|++.+|+ +++|+|++||||||+++.|+++..+..|.|.+.+.. ++.
T Consensus 21 ~~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 47889999999999 999999999999999999999999999999987732 110
Q ss_pred ------------c----hHHHHHHHHHHHcCCce---eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHH
Q 008816 456 ------------S----GAVEQLRTHARRLQVPI---FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYY 516 (552)
Q Consensus 456 ------------~----ga~eqL~~~~~~l~v~~---~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm 516 (552)
. ....+...+.+.+|++- ........-.+..|.||++|+.-+|.++|+|||+.+.|.....
T Consensus 99 ~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa 178 (252)
T COG1124 99 RTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178 (252)
T ss_pred hhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHH
Confidence 0 00011223344455541 1122334556777999999999999999999999888776666
Q ss_pred HHHHHHhhhhc
Q 008816 517 LFLLHIYLHTV 527 (552)
Q Consensus 517 ~eL~kl~~~~~ 527 (552)
+.|.-+..+..
T Consensus 179 ~IlnlL~~l~~ 189 (252)
T COG1124 179 QILNLLLELKK 189 (252)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 39
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.40 E-value=1.9e-12 Score=134.52 Aligned_cols=147 Identities=14% Similarity=0.052 Sum_probs=94.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga 458 (552)
..+|++++|.+.+|+ +++|+||||+|||||++.|++.+.++.|+|.+.+.|+.+. ..
T Consensus 20 ~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 97 (306)
T PRK13537 20 KLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTV 97 (306)
T ss_pred eEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcH
Confidence 458999999999999 9999999999999999999999999999999887765321 11
Q ss_pred HHHHHHHHH------------------HcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHH
Q 008816 459 VEQLRTHAR------------------RLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLF 518 (552)
Q Consensus 459 ~eqL~~~~~------------------~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~e 518 (552)
.+.+..++. .+++.-.. ...........+.+|++|+..+|+++|+|+|+...+..... +
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~-~ 176 (306)
T PRK13537 98 RENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH-L 176 (306)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHH-H
Confidence 222222221 11221100 01122334444789999999999999999999776654433 3
Q ss_pred HHHHhhhhccccEEEEEEecCcccHHHHHHH
Q 008816 519 LLHIYLHTVCEHFVNIITFRGMWSFDCLKRK 549 (552)
Q Consensus 519 L~kl~~~~~~~~~~~ii~~~~~f~~~~l~~~ 549 (552)
+..++..........++.....-+...+|++
T Consensus 177 l~~~l~~l~~~g~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 177 MWERLRSLLARGKTILLTTHFMEEAERLCDR 207 (306)
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 3333322222233444444444444555543
No 40
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.40 E-value=1.9e-12 Score=136.45 Aligned_cols=146 Identities=10% Similarity=0.010 Sum_probs=92.5
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------------------chH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------------------SGA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------------------~ga 458 (552)
..+|++++|.+.+|+ +++|+||||+|||||++.|++.+.+..|.|.+.+.++.. ...
T Consensus 54 ~~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 131 (340)
T PRK13536 54 KAVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131 (340)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcH
Confidence 358999999999999 999999999999999999999999999999988776421 011
Q ss_pred HHHHHHHH------------------HHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHH
Q 008816 459 VEQLRTHA------------------RRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLF 518 (552)
Q Consensus 459 ~eqL~~~~------------------~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~e 518 (552)
.+.+..++ +.++++-.. ...........+.+|++|+..+|+++|+|+|+...|... ...
T Consensus 132 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~-r~~ 210 (340)
T PRK13536 132 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA-RHL 210 (340)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH-HHH
Confidence 22222211 122222110 111233344557899999999999999999997665543 333
Q ss_pred HHHHhhhhccccEEEEEEecCcccHHHHHH
Q 008816 519 LLHIYLHTVCEHFVNIITFRGMWSFDCLKR 548 (552)
Q Consensus 519 L~kl~~~~~~~~~~~ii~~~~~f~~~~l~~ 548 (552)
+.+++..........++.....-....+|+
T Consensus 211 l~~~l~~l~~~g~tilisSH~l~e~~~~~d 240 (340)
T PRK13536 211 IWERLRSLLARGKTILLTTHFMEEAERLCD 240 (340)
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 333332221123334444444444444443
No 41
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=2e-12 Score=128.90 Aligned_cols=111 Identities=21% Similarity=0.238 Sum_probs=83.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------ 455 (552)
..+|+++++.+.+|+ +++|+||+||||||+++.|||+..+..|.|.+.+....+
T Consensus 16 ~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV 93 (248)
T COG1116 16 VEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNV 93 (248)
T ss_pred eEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhh
Confidence 678999999999999 999999999999999999999999999999987654210
Q ss_pred -----------chHHHHHHHHHHHcCCceeecCCC--CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 456 -----------SGAVEQLRTHARRLQVPIFEKGYE--KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 456 -----------~ga~eqL~~~~~~l~v~~~~~~~~--~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+.+....+.+.+|+.-+...|. .+-....|.||++|+..+|+++++|||-...|.
T Consensus 94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDa 163 (248)
T COG1116 94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA 163 (248)
T ss_pred eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhH
Confidence 011223334445556554443332 233444589999999999999999999755443
No 42
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.38 E-value=2.8e-12 Score=127.13 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=104.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC------------------cchHHHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------------RSGAVEQ 461 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~------------------r~ga~eq 461 (552)
..+++|++|.+++|+ +.+|+|+||+||||++++|.+++.++.|+|.+.+.+.. +....+|
T Consensus 15 k~av~~isf~v~~G~--i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dq 92 (300)
T COG4152 15 KKAVDNISFEVPPGE--IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ 92 (300)
T ss_pred eeeecceeeeecCCe--EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHH
Confidence 457889999999999 99999999999999999999999999999999886642 1234456
Q ss_pred HHHHHHHcCCceee--------------cCCCCCHH-HHH-----HHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHH
Q 008816 462 LRTHARRLQVPIFE--------------KGYEKDPA-IVA-----KEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLH 521 (552)
Q Consensus 462 L~~~~~~l~v~~~~--------------~~~~~dp~-~ia-----r~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~k 521 (552)
|..+++.-|++-.+ .++..++. .++ +..+-.++.+.|++||+|+|-...++ --.+.|++
T Consensus 93 l~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDP-VN~elLk~ 171 (300)
T COG4152 93 LKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKD 171 (300)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCCh-hhHHHHHH
Confidence 65555444333211 01111111 111 23344467899999999999865543 44455666
Q ss_pred HhhhhccccEEEEEEecCcccHHHHHHHh
Q 008816 522 IYLHTVCEHFVNIITFRGMWSFDCLKRKE 550 (552)
Q Consensus 522 l~~~~~~~~~~~ii~~~~~f~~~~l~~~~ 550 (552)
.+.........++.+..-|=+...||++.
T Consensus 172 ~I~~lk~~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 172 AIFELKEEGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred HHHHHHhcCCEEEEecchHHHHHHHhhhh
Confidence 66666666677777888888899999874
No 43
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.38 E-value=2.4e-12 Score=127.41 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=86.5
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCC-------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV------- 471 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v------- 471 (552)
..-++++++|.+.+|+ +++|+|++|+||||+++.|.++++++.|.|.+.+.|+......++. ...+++|+
T Consensus 20 ~~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~-~ir~r~GvlFQ~gAL 96 (263)
T COG1127 20 DRVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY-EIRKRMGVLFQQGAL 96 (263)
T ss_pred CEEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHH-HHHhheeEEeecccc
Confidence 3457899999999999 9999999999999999999999999999999999997655443322 22223222
Q ss_pred ------------ceeecC------------------------CCCCHHHHH-----HHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 472 ------------PIFEKG------------------------YEKDPAIVA-----KEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 472 ------------~~~~~~------------------------~~~dp~~ia-----r~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
|+.+.. ...-|.++. |.|+++|+.-+|+++++|||+..+
T Consensus 97 FssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGL 176 (263)
T COG1127 97 FSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGL 176 (263)
T ss_pred ccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence 111100 011222222 789999999999999999999776
Q ss_pred ChHHHHHHHHHHh
Q 008816 511 VIIEYYLFLLHIY 523 (552)
Q Consensus 511 ~~~~lm~eL~kl~ 523 (552)
++. .+..+.+|+
T Consensus 177 DPI-~a~~~~~LI 188 (263)
T COG1127 177 DPI-SAGVIDELI 188 (263)
T ss_pred Ccc-hHHHHHHHH
Confidence 653 334444443
No 44
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.38 E-value=1.9e-12 Score=127.51 Aligned_cols=123 Identities=18% Similarity=0.187 Sum_probs=85.3
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHH----------H----
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR----------T---- 464 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~----------~---- 464 (552)
.+.+|++++|.++.|+ +++++|+||+|||||++.|++...+..|+|.+.+.|+-+..+.+..+ .
T Consensus 15 ~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 15 KIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred ceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 3679999999999999 99999999999999999999999999999999999976544333111 0
Q ss_pred --HHHHcCCceeec---------------------------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 465 --HARRLQVPIFEK---------------------------GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 465 --~~~~l~v~~~~~---------------------------~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+-+..+.. +...+-.+-.+.||++|+..+|.++++|||+. ......
T Consensus 93 LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~-GLaP~i 171 (237)
T COG0410 93 LTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE-GLAPKI 171 (237)
T ss_pred CcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCcc-CcCHHH
Confidence 001111100000 00111222236899999999999999999984 444455
Q ss_pred HHHHHHHhh
Q 008816 516 YLFLLHIYL 524 (552)
Q Consensus 516 m~eL~kl~~ 524 (552)
.+++-.++.
T Consensus 172 v~~I~~~i~ 180 (237)
T COG0410 172 VEEIFEAIK 180 (237)
T ss_pred HHHHHHHHH
Confidence 555544443
No 45
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.37 E-value=7.2e-12 Score=119.14 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=79.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCC-
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE- 479 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~- 479 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++..... .. +.+. +.++.+...
T Consensus 16 ~~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~---~~~~--i~~~~q~~~~ 87 (173)
T cd03246 16 PVLRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP-NE---LGDH--VGYLPQDDEL 87 (173)
T ss_pred cceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH-HH---HHhh--eEEECCCCcc
Confidence 47899999999999 999999999999999999999999999999998776643222 11 1122 212111110
Q ss_pred ---------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 480 ---------KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 480 ---------~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
....+..+.+|++|+..+++++|+|+|+...+...
T Consensus 88 ~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~ 131 (173)
T cd03246 88 FSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131 (173)
T ss_pred ccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH
Confidence 34455568899999999999999999997665543
No 46
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=6.3e-13 Score=129.47 Aligned_cols=147 Identities=17% Similarity=0.189 Sum_probs=95.6
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-----CceEEEeeecCCcch-HHHHHHHHHHHc---
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTFRSG-AVEQLRTHARRL--- 469 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-----ggkVll~~~D~~r~g-a~eqL~~~~~~l--- 469 (552)
...+|++|++.+++++ |.+|+||+||||||++++|.+..... .|+|.+.+.|+|... -+-.||.....+
T Consensus 19 ~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 19 DKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred chhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 4568899999999998 99999999999999999999876544 489999999988542 111222211110
Q ss_pred -------------------CCc----------------e--------eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 470 -------------------QVP----------------I--------FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 470 -------------------~v~----------------~--------~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
|+. + -..+.+....+-.|..|++|+.-.|+|+|+|+|
T Consensus 97 PnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEP 176 (253)
T COG1117 97 PNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEP 176 (253)
T ss_pred CCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCc
Confidence 000 0 001112223333478899999999999999999
Q ss_pred CCCCCh------HHHHHHHHHHhhhhccccEEEEE----EecCcccHHHHH
Q 008816 507 GRMQVI------IEYYLFLLHIYLHTVCEHFVNII----TFRGMWSFDCLK 547 (552)
Q Consensus 507 Gr~~~~------~~lm~eL~kl~~~~~~~~~~~ii----~~~~~f~~~~l~ 547 (552)
+...++ +++|.+|++-..+...+|.+... .++.||....|+
T Consensus 177 tSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~Lv 227 (253)
T COG1117 177 TSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELV 227 (253)
T ss_pred ccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEE
Confidence 987766 45566665544333333333222 566666655443
No 47
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.37 E-value=3.5e-12 Score=132.01 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=78.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.+|++++|.+.+|+ +++|+||||+||||++++|++++.+..|.|.+.+.++.+. ...
T Consensus 7 ~~l~~vs~~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 7 KAVDGVNFKVREGE--VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 47899999999999 9999999999999999999999999999999877654211 111
Q ss_pred HHHHH------------------HHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQLRT------------------HARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL~~------------------~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+.. +.+.+++.-.. ...........+.+|++|+..+|+++|+|+|+...+...
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 11111 11222222110 011123344447899999999999999999997766543
No 48
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=5.2e-12 Score=119.90 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=81.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecC---
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKG--- 477 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~--- 477 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++....... +.+.++ ++.+.
T Consensus 16 ~~l~~i~~~i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~----~~~~i~--~~~~~~~~ 87 (171)
T cd03228 16 PVLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLES----LRKNIA--YVPQDPFL 87 (171)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHH----HHhhEE--EEcCCchh
Confidence 47889999999999 99999999999999999999999999999998887653322111 111211 11110
Q ss_pred CC-------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 478 YE-------KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 478 ~~-------~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
.. ....+..+.+|++|+..+|+++|+|+|+...+.. ....+.++.
T Consensus 88 ~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~-~~~~l~~~l 139 (171)
T cd03228 88 FSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPE-TEALILEAL 139 (171)
T ss_pred ccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH-HHHHHHHHH
Confidence 00 2334555788999999999999999999766553 344444443
No 49
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=4.7e-12 Score=123.93 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=79.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------c-------------hHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------S-------------GAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------~-------------ga~e 460 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|+|.+.+.++.. . ...+
T Consensus 14 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 14 RALDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eeecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 47899999999999 999999999999999999999999999999886654311 0 0111
Q ss_pred HH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 461 QL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 461 qL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~ 165 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 11 1112223332111 011234455558899999999999999999997766544
No 50
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.36 E-value=5.6e-12 Score=122.80 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=81.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC------cch--------------HHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSG--------------AVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~------r~g--------------a~e 460 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.++. +.+ ..+
T Consensus 14 ~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 14 EILDDLSLDLYAGE--IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred ceeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 47899999999999 99999999999999999999999999998887665431 000 011
Q ss_pred H--------------HHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 461 Q--------------LRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 461 q--------------L~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
. ...+.+.+++.-+.. .......+..+.+|++|+..+|+++|+|||+...+.. ..+.+.+++
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~-~~~~l~~~l 169 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK-NMERVGELI 169 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH-HHHHHHHHH
Confidence 1 111222233321111 1123344555889999999999999999999766554 334444433
No 51
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=5.2e-12 Score=129.04 Aligned_cols=148 Identities=18% Similarity=0.121 Sum_probs=98.2
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHc---------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--------- 469 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l--------- 469 (552)
.+.+++++++.+++|+ +++|||.+|+|||||+++|.++-.|+.|+|.+.+.|+......+ |+...++.
T Consensus 18 ~~~al~~vsL~I~~Ge--I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~-Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSLEIPKGE--IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE-LRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceEEEcCCc--EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHH-HHHHHhhccEEeccccc
Confidence 4678999999999999 99999999999999999999999999999999998875433222 22222221
Q ss_pred -----------------------------------CCceeecCCC--CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 470 -----------------------------------QVPIFEKGYE--KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 470 -----------------------------------~v~~~~~~~~--~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
|++-....|. .+..+..|.+|++|+..+|+++|.|||+...|+
T Consensus 95 LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP 174 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174 (339)
T ss_pred cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCCh
Confidence 2221111111 111223389999999999999999999987777
Q ss_pred HHHHHHHHHHhhhhccccEEEEEEecCcccHHHHHHH
Q 008816 513 IEYYLFLLHIYLHTVCEHFVNIITFRGMWSFDCLKRK 549 (552)
Q Consensus 513 ~~lm~eL~kl~~~~~~~~~~~ii~~~~~f~~~~l~~~ 549 (552)
+.--..|..|..+-..-.+.+++-+..|==...+|+|
T Consensus 175 ~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~r 211 (339)
T COG1135 175 ETTQSILELLKDINRELGLTIVLITHEMEVVKRICDR 211 (339)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhh
Confidence 5544444444433333333344434444333444443
No 52
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.36 E-value=4.9e-12 Score=133.43 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=81.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--------------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga--------------------- 458 (552)
..+|++++|.+.+|+ +++|+|+||||||||+++|++++.++.|+|.+.+.++.....
T Consensus 18 ~~~L~~vsl~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 458999999999999 999999999999999999999999999999998876542111
Q ss_pred ----HHHH------------------HHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 ----VEQL------------------RTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 ----~eqL------------------~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+ ..+.+.+++.-... ....+..+..|.+|++|+..+|+++|+|||+...|...
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t 175 (343)
T TIGR02314 96 SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175 (343)
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 0000 01111222221111 11223344458999999999999999999997766544
Q ss_pred H
Q 008816 515 Y 515 (552)
Q Consensus 515 l 515 (552)
.
T Consensus 176 ~ 176 (343)
T TIGR02314 176 T 176 (343)
T ss_pred H
Confidence 3
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.36 E-value=6e-12 Score=123.07 Aligned_cols=114 Identities=19% Similarity=0.151 Sum_probs=79.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------c-------------hHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------S-------------GAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------~-------------ga~e 460 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+.+|+|.+.+.++.. . ...+
T Consensus 14 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 14 TALDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 47899999999999 999999999999999999999999999988876554311 0 0111
Q ss_pred HH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHH
Q 008816 461 QL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYY 516 (552)
Q Consensus 461 qL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm 516 (552)
.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|||+...+.....
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~ 167 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRV 167 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 11 1112233332110 11123444555789999999999999999999777655433
No 54
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.35 E-value=6.3e-12 Score=123.01 Aligned_cols=113 Identities=19% Similarity=0.108 Sum_probs=78.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++++.+..|+|.+.+.++....
T Consensus 16 ~il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 16 AALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred eeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 48899999999999 99999999999999999999999999999988765542110
Q ss_pred --HHHHHH------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 458 --AVEQLR------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 458 --a~eqL~------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+. .+.+.+++.-.. ........+..+.+|++|+..+|+++|+|||+...+....
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 011111 111122222110 0112333455588999999999999999999976655443
No 55
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.35 E-value=7.9e-12 Score=122.59 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=79.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++++.+..|+|.+.+.++...
T Consensus 17 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 17 PALDNLNFHITKGE--MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred eEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 48899999999999 9999999999999999999999999999998876543110
Q ss_pred -hHHHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 457 -GAVEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 457 -ga~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
...+.+ ..+.+.+++.-+. ........+..|.+|++|+..+|+++|+|||+...+....
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 174 (216)
T TIGR00960 95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 (216)
T ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 001111 1111222332110 1112334455589999999999999999999977665443
No 56
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.35 E-value=9e-12 Score=119.93 Aligned_cols=113 Identities=20% Similarity=0.181 Sum_probs=77.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-----------ch------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-----------SG------------ 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-----------~g------------ 457 (552)
.+|++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.+... .+
T Consensus 6 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 6 EVLKGLNFAAERGE--VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ceecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 47899999999999 999999999999999999999999999988876654310 00
Q ss_pred --HHHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 458 --AVEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 458 --a~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|+|+...+....
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 00111 0111122222110 0112233444578999999999999999999977665443
No 57
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=6.6e-12 Score=123.61 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=80.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC----------------c-chHHHHH-
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------------R-SGAVEQL- 462 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~----------------r-~ga~eqL- 462 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.+.. . ....+.+
T Consensus 18 ~il~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 18 TALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred EEEeceeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHH
Confidence 58899999999999 99999999999999999999999998998877554421 0 0111111
Q ss_pred -----------------HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 463 -----------------RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 463 -----------------~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+.+++.-+ . ........+..+.+|++|+..+|+++|+|||+...+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 167 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence 112233343211 1 1123455566689999999999999999999976655433
No 58
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.34 E-value=2.5e-12 Score=123.29 Aligned_cols=115 Identities=11% Similarity=0.051 Sum_probs=80.3
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCC--------ce
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV--------PI 473 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v--------~~ 473 (552)
++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.+.......+ +..++ .+
T Consensus 15 ~l~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~---~~i~~~~q~~~~~~~ 89 (182)
T cd03215 15 AVRDVSFEVRAGE--IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR---AGIAYVPEDRKREGL 89 (182)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHh---CCeEEecCCcccCcc
Confidence 7889999999999 99999999999999999999999999999999887765432211111 11110 01
Q ss_pred eecCC---------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 474 FEKGY---------EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 474 ~~~~~---------~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
+.... .....+..+.+|++|+..+|+++|+|||....+.. ..+.+.++
T Consensus 90 ~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~-~~~~l~~~ 146 (182)
T cd03215 90 VLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG-AKAEIYRL 146 (182)
T ss_pred cCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH-HHHHHHHH
Confidence 10000 02333445788999999999999999999766543 33344333
No 59
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.34 E-value=1.3e-11 Score=120.07 Aligned_cols=135 Identities=19% Similarity=0.140 Sum_probs=87.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.
T Consensus 12 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 12 IILDDLNLTIEKGK--MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred EEEeceEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 47899999999999 9999999999999999999999999999998877653110
Q ss_pred --hHHHH------------------HHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 457 --GAVEQ------------------LRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 457 --ga~eq------------------L~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
...+. ...+.+.+++.-+. ........+..+.+|++|+..+|+++|+|+|+...+...
T Consensus 90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~ 169 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN 169 (206)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence 00010 11122222332110 111234455558899999999999999999997665543
Q ss_pred HHHHHHHHhh-hhccccEEEEEEec
Q 008816 515 YYLFLLHIYL-HTVCEHFVNIITFR 538 (552)
Q Consensus 515 lm~eL~kl~~-~~~~~~~~~ii~~~ 538 (552)
...+.+++. .......+.++++.
T Consensus 170 -~~~l~~~l~~~~~~~~tii~~sh~ 193 (206)
T TIGR03608 170 -RDEVLDLLLELNDEGKTIIIVTHD 193 (206)
T ss_pred -HHHHHHHHHHHHhcCCEEEEEeCC
Confidence 334433332 22223344444444
No 60
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.34 E-value=1.3e-11 Score=120.58 Aligned_cols=119 Identities=19% Similarity=0.156 Sum_probs=80.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc-----------------------h
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS-----------------------G 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~-----------------------g 457 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++... .
T Consensus 15 ~il~~vs~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 15 PALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 47899999999999 9999999999999999999999999999888765442110 0
Q ss_pred HHHHHH------------------HHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHH
Q 008816 458 AVEQLR------------------THARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYL 517 (552)
Q Consensus 458 a~eqL~------------------~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~ 517 (552)
..+.+. .+.+.+++.-. . ........+..+.+|++|+..+|+++|+|||+...+.. ...
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~-~~~ 171 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA-GRR 171 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH-HHH
Confidence 111111 11122233211 0 11223445555889999999999999999999765544 333
Q ss_pred HHHHH
Q 008816 518 FLLHI 522 (552)
Q Consensus 518 eL~kl 522 (552)
.+.++
T Consensus 172 ~~~~~ 176 (211)
T cd03225 172 ELLEL 176 (211)
T ss_pred HHHHH
Confidence 43333
No 61
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.34 E-value=9.6e-12 Score=119.35 Aligned_cols=112 Identities=22% Similarity=0.155 Sum_probs=81.6
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceee----
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE---- 475 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~---- 475 (552)
..+|+|++|.+++|+ ++.++||+|+||||+++.|.+...++.|+|.+.++|+-+....+ +..+.++.|+-+..
T Consensus 15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~-iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGRE-IPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccc-cchhhheeeeEeeecccc
Confidence 568999999999999 99999999999999999999999999999999999975432211 11111221111100
Q ss_pred ---------------cCC---------------------------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 476 ---------------KGY---------------------------EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 476 ---------------~~~---------------------------~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.++ ..+..+-.|.+|++|..+.|+++|-|||+-+.++.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~ 171 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD 171 (223)
T ss_pred ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH
Confidence 000 11122333799999999999999999999776664
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 172 ~ 172 (223)
T COG2884 172 L 172 (223)
T ss_pred H
Confidence 4
No 62
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.34 E-value=7e-12 Score=132.76 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=81.6
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAV 459 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~ 459 (552)
..+|++++|.+.+|+ +++|+|||||||||++++||+++.++.|+|.+.+.+... ....
T Consensus 17 ~~~l~~vs~~i~~Ge--~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 17 FTALKDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred eEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 347899999999999 999999999999999999999999999999987655321 0011
Q ss_pred H------------------HHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 460 E------------------QLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 460 e------------------qL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+ ....+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|||....+..
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~ 168 (353)
T TIGR03265 95 DNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168 (353)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 1 1222333444432211 1234445566899999999999999999999766543
No 63
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.34 E-value=1.4e-11 Score=119.97 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=79.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+.... ...
T Consensus 14 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (201)
T cd03231 14 ALFSGLSFTLAAGE--ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVL 91 (201)
T ss_pred eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHH
Confidence 47889999999999 9999999999999999999999999999998876553210 011
Q ss_pred HH------------HHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQ------------LRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eq------------L~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+. +..+.+.+++.-+.. ..........+.+|++|+..+|+++|+|+|+...+...
T Consensus 92 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 160 (201)
T cd03231 92 ENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG 160 (201)
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 11 111222333321111 11234455558899999999999999999997766544
No 64
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.34 E-value=1.4e-11 Score=120.12 Aligned_cols=119 Identities=15% Similarity=0.058 Sum_probs=81.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++... ...
T Consensus 15 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 15 ILFSGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL 92 (204)
T ss_pred EEEecceEEECCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHH
Confidence 47899999999999 9999999999999999999999999999998876553210 111
Q ss_pred HHH---------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 460 EQL---------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 460 eqL---------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
+.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|+|+...+.. ....+.++
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~-~~~~l~~~ 171 (204)
T PRK13538 93 ENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ-GVARLEAL 171 (204)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH-HHHHHHHH
Confidence 111 1122223332110 11123444555889999999999999999999765544 33333333
No 65
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.33 E-value=3.5e-12 Score=134.00 Aligned_cols=123 Identities=14% Similarity=0.120 Sum_probs=85.5
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHH-------------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV------------------- 459 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~------------------- 459 (552)
...+++|+++.+.+|+ +++|+||+||||||++++|||+..+++|+|.|.+.|+....+.
T Consensus 17 ~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 17 DFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred CeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcH
Confidence 4568899999999999 9999999999999999999999999999999999986532110
Q ss_pred ----------------H----HHHHHHHHcCCceeecCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh---HH
Q 008816 460 ----------------E----QLRTHARRLQVPIFEKGY--EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI---IE 514 (552)
Q Consensus 460 ----------------e----qL~~~~~~l~v~~~~~~~--~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~---~~ 514 (552)
+ ....+.+.+++.-+...+ ...-.+..|.|+++|+..+|+++|+|+|=...+. ..
T Consensus 95 ~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~ 174 (352)
T COG3842 95 EENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174 (352)
T ss_pred HHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHH
Confidence 0 111122222333222111 1222334489999999999999999999754433 23
Q ss_pred HHHHHHHHh
Q 008816 515 YYLFLLHIY 523 (552)
Q Consensus 515 lm~eL~kl~ 523 (552)
+..+|..+.
T Consensus 175 mr~Elk~lq 183 (352)
T COG3842 175 MRKELKELQ 183 (352)
T ss_pred HHHHHHHHH
Confidence 444444444
No 66
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=9.6e-12 Score=122.48 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=80.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------------------chHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------------------SGAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------------------~ga~ 459 (552)
.++++++|.+.+|+ +++|+|+||+|||||++.|++.+.+..|+|.+.+.+... ....
T Consensus 14 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (220)
T cd03265 14 EAVRGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGW 91 (220)
T ss_pred EeeeceeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHH
Confidence 48899999999999 999999999999999999999999998988876544210 0011
Q ss_pred HHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHH
Q 008816 460 EQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFL 519 (552)
Q Consensus 460 eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL 519 (552)
+.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|+|+...+.. ..+.+
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~-~~~~l 170 (220)
T cd03265 92 ENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ-TRAHV 170 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHH-HHHHH
Confidence 111 1112222332110 01123334455789999999999999999999766554 34444
Q ss_pred HHH
Q 008816 520 LHI 522 (552)
Q Consensus 520 ~kl 522 (552)
.++
T Consensus 171 ~~~ 173 (220)
T cd03265 171 WEY 173 (220)
T ss_pred HHH
Confidence 443
No 67
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=7.6e-12 Score=132.66 Aligned_cols=111 Identities=19% Similarity=0.140 Sum_probs=80.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc--------------------hHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--------------------GAV 459 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~--------------------ga~ 459 (552)
..+|++++|.+.+|+ +++|+|||||||||++++||+++.+..|+|.+.+.++... ...
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 17 TQVIKGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CEEEeeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 347899999999999 9999999999999999999999999999999877654210 111
Q ss_pred HHH------------------HHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 460 EQL------------------RTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 460 eqL------------------~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
+.+ ..+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|||....|.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~ 167 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 111 12223334432111 123344556689999999999999999999966554
No 68
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.33 E-value=1.1e-11 Score=121.19 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=78.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+.
T Consensus 14 ~~l~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (213)
T cd03262 14 HVLKGIDLTVKKGE--VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL 91 (213)
T ss_pred EeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCC
Confidence 47899999999999 9999999999999999999999999999998876554210
Q ss_pred hHHHHH-------------------HHHHHHcCCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 457 GAVEQL-------------------RTHARRLQVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 457 ga~eqL-------------------~~~~~~l~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
...+.+ ..+.+.+++.-. ............+.+|++|+..+|+++|+|+|....+...
T Consensus 92 t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 170 (213)
T cd03262 92 TVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL 170 (213)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 001111 111122233211 0111233445557899999999999999999997665543
No 69
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.3e-11 Score=123.55 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=81.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.+. ...
T Consensus 17 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (241)
T PRK14250 17 EILKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVK 94 (241)
T ss_pred eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHH
Confidence 47899999999999 9999999999999999999999999999998877653210 000
Q ss_pred --------------HHHHHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 --------------EQLRTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 --------------eqL~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+...+.+.++++ +.. ........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 95 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 166 (241)
T PRK14250 95 DNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166 (241)
T ss_pred HHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 1112223334443 111 122345566668999999999999999999997766543
No 70
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=1.1e-11 Score=121.19 Aligned_cols=112 Identities=17% Similarity=0.199 Sum_probs=78.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC-----------------c-chHHHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------------R-SGAVEQL 462 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~-----------------r-~ga~eqL 462 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++. . ....+.+
T Consensus 14 ~~l~~v~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 14 TALDDISFSVEKGE--IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EEEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHH
Confidence 47899999999999 99999999999999999999999998998887654320 0 0111221
Q ss_pred H------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 463 R------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 463 ~------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
. .+.+.+++.-.. ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~ 163 (210)
T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN 163 (210)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 1 122223332110 112234455568899999999999999999997665543
No 71
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=1e-11 Score=123.49 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=78.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++...
T Consensus 14 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (235)
T cd03261 14 TVLKGVDLDVRRGE--ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDS 91 (235)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCC
Confidence 48899999999999 9999999999999999999999999999998876553211
Q ss_pred -hHHHHHH-------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 457 -GAVEQLR-------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 457 -ga~eqL~-------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
...+.+. .+.+.+++.-+. ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~ 171 (235)
T cd03261 92 LTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIA 171 (235)
T ss_pred CcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 0011110 011122322110 011233344558899999999999999999997766543
No 72
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.33 E-value=1.4e-11 Score=120.39 Aligned_cols=113 Identities=17% Similarity=0.089 Sum_probs=78.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|.|.+.+.++....
T Consensus 15 ~~l~~~sl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 15 AALDGINISISAGE--FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 47899999999999 99999999999999999999999999999988766542110
Q ss_pred --HHHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 458 --AVEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 458 --a~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+ ..+.+.+++.-.. ........+..+.+|++|+..+|+++|+|||+...+....
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 172 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 01111 1111122222110 0112333455578999999999999999999976665443
No 73
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.33 E-value=8.5e-12 Score=129.22 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=78.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------------------chHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------------------SGAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------------------~ga~ 459 (552)
.+|++++|.+.+|+ +++|+||||+|||||++.|++.+.+..|.|.+.+.+... ....
T Consensus 18 ~~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 95 (303)
T TIGR01288 18 VVVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVR 95 (303)
T ss_pred EEEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHH
Confidence 48899999999999 999999999999999999999999999999887655310 0111
Q ss_pred HHHHHH------------------HHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQLRTH------------------ARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL~~~------------------~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+..+ .+.+++.-.. ...........+.+|++|+..+|+++|+|+|+...+...
T Consensus 96 e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 170 (303)
T TIGR01288 96 ENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170 (303)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 222111 1112221100 011223344557899999999999999999997665543
No 74
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1e-11 Score=125.57 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=81.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC----------------c-chHHHH--
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------------R-SGAVEQ-- 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~----------------r-~ga~eq-- 461 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++++.+..|+|.+.+.++. . ....+.
T Consensus 15 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 92 (255)
T PRK11248 15 PALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVA 92 (255)
T ss_pred eeEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHH
Confidence 47899999999999 99999999999999999999999999999887554421 0 011111
Q ss_pred ----------------HHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 462 ----------------LRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 462 ----------------L~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
...+.+.+++.-.. ...........+.+|++|+..+|+++|+|+|+...+... ...+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~-~~~l~~~ 170 (255)
T PRK11248 93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT-REQMQTL 170 (255)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH-HHHHHHH
Confidence 11222333432111 112234455568899999999999999999997665543 3344333
No 75
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.33 E-value=1.2e-11 Score=121.49 Aligned_cols=135 Identities=19% Similarity=0.129 Sum_probs=86.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.+.....
T Consensus 18 ~il~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 18 QALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eEEeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 58999999999999 99999999999999999999999999999988665432100
Q ss_pred ---HHHHH------------------HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 ---AVEQL------------------RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 ---a~eqL------------------~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+ ..+.+.+++.-. . ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 00111 111122233211 0 011233344557899999999999999999997665544
Q ss_pred HHHHHHHHhh-hhc-cccEEEEEEec
Q 008816 515 YYLFLLHIYL-HTV-CEHFVNIITFR 538 (552)
Q Consensus 515 lm~eL~kl~~-~~~-~~~~~~ii~~~ 538 (552)
...+.+++. ... ....+.++++.
T Consensus 176 -~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 176 -GKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred -HHHHHHHHHHHHHhcCCeEEEEECC
Confidence 334444333 222 13344444443
No 76
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.33 E-value=1.1e-11 Score=121.89 Aligned_cols=114 Identities=17% Similarity=0.116 Sum_probs=79.3
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga 458 (552)
..+|++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.++.+. ..
T Consensus 15 ~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 348899999999999 9999999999999999999999999999988766553210 01
Q ss_pred HHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 459 VEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 459 ~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
.+.+ ..+.+.+++.-.. ........+..+.+|++|+..+|+++|+|||....+....
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~ 169 (220)
T cd03263 93 REHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHH
Confidence 1111 1112222332110 0112333445578999999999999999999977665443
No 77
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=9.5e-12 Score=131.25 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=80.9
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------- 457 (552)
..+|++++|.+.+|+ +++|+||||||||||+++|++.+.+..|+|.+.+.++....
T Consensus 18 ~~il~~vsl~i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 18 IHALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 458999999999999 99999999999999999999999999999998876643211
Q ss_pred ---HHHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 ---AVEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 ---a~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|+|+...+...
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~ 175 (343)
T PRK11153 96 SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175 (343)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 11111 1112222332111 111233445558999999999999999999997766544
No 78
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.33 E-value=1.5e-11 Score=121.74 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=77.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc-----------------------h
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS-----------------------G 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~-----------------------g 457 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+..+. .
T Consensus 14 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (232)
T cd03218 14 KVVNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLT 91 (232)
T ss_pred EeeccceeEecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCc
Confidence 47899999999999 9999999999999999999999999999988865543110 0
Q ss_pred HHHHHH------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 AVEQLR------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 a~eqL~------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+. .+.+.+++.-.. ........+..+.+|++|+..+|+++|+|+|+...+...
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 168 (232)
T cd03218 92 VEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168 (232)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 011111 111122222110 011223344457899999999999999999997766544
No 79
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.32 E-value=1e-11 Score=119.33 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=72.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 480 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~ 480 (552)
.++.++ +.+++|+ +++|+||||+||||+++.|++++.+.+|+|.+.+.++. +..+....
T Consensus 14 ~~l~~~-~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~------------------~~~q~~~L 72 (177)
T cd03222 14 FLLVEL-GVVKEGE--VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV------------------YKPQYIDL 72 (177)
T ss_pred EEEccC-cEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEE------------------EEcccCCC
Confidence 356664 7889999 99999999999999999999999999999998764421 11111114
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 481 dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
...+..+.++++++..+++++|+|||....+...
T Consensus 73 SgGq~qrv~laral~~~p~lllLDEPts~LD~~~ 106 (177)
T cd03222 73 SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ 106 (177)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 5566678899999999999999999997665543
No 80
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.2e-11 Score=123.55 Aligned_cols=112 Identities=12% Similarity=0.139 Sum_probs=80.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc----------------------chH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----------------------SGA 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r----------------------~ga 458 (552)
.+|++++|.+.+|+ +++|+||||+||||+++.|++.+.+.+|+|.+.+.++.+ ...
T Consensus 15 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 15 KAVNNLNLEIAKGE--FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred eEeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 47899999999999 999999999999999999999999999998876544210 001
Q ss_pred HHHH------------------HHHHHHcCCce---eec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 VEQL------------------RTHARRLQVPI---FEK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 ~eqL------------------~~~~~~l~v~~---~~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+ ..+.+.+++.- ... ..........+.+|++|+..+|+++|+|+|+...+...
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 170 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence 1111 12223344431 111 12334455668999999999999999999997666544
No 81
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=6.3e-12 Score=125.95 Aligned_cols=127 Identities=19% Similarity=0.144 Sum_probs=85.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHH--------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV-------------------- 459 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~-------------------- 459 (552)
..+++++++.+.+|+ .++|+|+|||||||++..|++++.+..|.|.+.+.++......
T Consensus 17 ~~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKGE--RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 568999999999999 9999999999999999999999999999998877664310000
Q ss_pred ----------------------HHHHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 460 ----------------------EQLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 460 ----------------------eqL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
.........+++.-+. ..+..+-.+.-|.||+-++..+|+++|+|||+.+.+....
T Consensus 95 ~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~ 174 (235)
T COG1122 95 PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGR 174 (235)
T ss_pred CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHH
Confidence 0011111122222111 0011111222378999999999999999999988877654
Q ss_pred HHHHHHHhhhhcc
Q 008816 516 YLFLLHIYLHTVC 528 (552)
Q Consensus 516 m~eL~kl~~~~~~ 528 (552)
-+.+.-+......
T Consensus 175 ~~l~~~l~~L~~~ 187 (235)
T COG1122 175 RELLELLKKLKEE 187 (235)
T ss_pred HHHHHHHHHHHhc
Confidence 4444444444444
No 82
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.32 E-value=1.7e-11 Score=116.98 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=78.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCC-----ceee
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV-----PIFE 475 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v-----~~~~ 475 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++... .. .+.+..++ .++.
T Consensus 16 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--~~---~~~~~i~~~~q~~~~~~ 88 (178)
T cd03247 16 QVLKNLSLELKQGE--KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EK---ALSSLISVLNQRPYLFD 88 (178)
T ss_pred cceEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH--HH---HHHhhEEEEccCCeeec
Confidence 47899999999999 9999999999999999999999999999999887765221 11 11121111 0110
Q ss_pred c------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 476 K------GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 476 ~------~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
. .......+..+.+|++|+..+|+++|+|+|....+...
T Consensus 89 ~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~ 133 (178)
T cd03247 89 TTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT 133 (178)
T ss_pred ccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 0 11234456668899999999999999999997665543
No 83
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.32 E-value=1.3e-11 Score=125.25 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=79.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC----------------Cc-chHHH---
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------------FR-SGAVE--- 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~----------------~r-~ga~e--- 460 (552)
.+|++++|.+.+|+ +++|+||||+|||||++.|++++.+..|+|.+.+.+. |. ....+
T Consensus 26 ~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 103 (257)
T PRK11247 26 TVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVG 103 (257)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHH
Confidence 47899999999999 9999999999999999999999999999887644321 00 01111
Q ss_pred ---------HHHHHHHHcCCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 461 ---------QLRTHARRLQVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 461 ---------qL~~~~~~l~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
....+.+.+++.-. .........+..+.+|++|+..+++++|+|||+...+...
T Consensus 104 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~ 168 (257)
T PRK11247 104 LGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168 (257)
T ss_pred hcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 11223334444321 1112344556668999999999999999999997665543
No 84
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=6.9e-12 Score=139.72 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=83.8
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH--------------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA-------------------- 458 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga-------------------- 458 (552)
...+|+|++|.+++|+ ++++|||+|+||||++..|-+++.|.+|+|++.+.|+.....
T Consensus 480 ~~~Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~s 557 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGS 557 (716)
T ss_pred CchhhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeeccc
Confidence 5679999999999999 999999999999999999999999999999999988642211
Q ss_pred -------------HHHHHHHHHHc-------------CCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 459 -------------VEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 459 -------------~eqL~~~~~~l-------------~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
.|.+..-++.. +-.+-++|......+..|.||++|+..+|.++|+|||+...|.
T Consensus 558 I~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDa 637 (716)
T KOG0058|consen 558 IRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA 637 (716)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcch
Confidence 01111111111 1112223333444566689999999999999999999976654
No 85
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.2e-11 Score=118.17 Aligned_cols=108 Identities=23% Similarity=0.229 Sum_probs=79.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecC---
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKG--- 477 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~--- 477 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+...... ....+.+. +.+..+.
T Consensus 14 ~~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~~~~--i~~~~q~~~~ 87 (178)
T cd03229 14 TVLNDVSLNIEAGE--IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED--ELPPLRRR--IGMVFQDFAL 87 (178)
T ss_pred EEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccch--hHHHHhhc--EEEEecCCcc
Confidence 47899999999999 999999999999999999999999999999998876533210 00111111 1111110
Q ss_pred -----------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 478 -----------YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 478 -----------~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.........+.+|++|+..+|+++|+|+|....+...
T Consensus 88 ~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~ 135 (178)
T cd03229 88 FPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135 (178)
T ss_pred CCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 0034456668899999999999999999997665543
No 86
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.3e-11 Score=117.48 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=79.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCC--
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY-- 478 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~-- 478 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|+|.+.+.+..... .. +... +.+..+..
T Consensus 14 ~~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~---~~~~--i~~~~q~~~~ 84 (173)
T cd03230 14 TALDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EE---VKRR--IGYLPEEPSL 84 (173)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--Hh---hhcc--EEEEecCCcc
Confidence 47899999999999 99999999999999999999999999999999877654321 11 1111 22211110
Q ss_pred --C--------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 479 --E--------KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 479 --~--------~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
. ....+..+.+|++|+..+|+++|+|+|+...+....
T Consensus 85 ~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 131 (173)
T cd03230 85 YENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESR 131 (173)
T ss_pred ccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 1 234455688999999999999999999977665443
No 87
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.31 E-value=1.6e-11 Score=120.14 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=80.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC-------------------CcchHHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------------FRSGAVEQ 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~-------------------~r~ga~eq 461 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++++.+..|.|.+.+.+. +.....+.
T Consensus 13 ~~l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 13 PVLEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred EeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 47899999999999 9999999999999999999999999889887765432 00011111
Q ss_pred ----------------------HHHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHH
Q 008816 462 ----------------------LRTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYL 517 (552)
Q Consensus 462 ----------------------L~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~ 517 (552)
...+.+.+++.-. . ...........+.+|++|+..+|+++|+|||+...+... ..
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~-~~ 169 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT-QE 169 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH-HH
Confidence 1112222333211 0 112334455568899999999999999999997665543 33
Q ss_pred HHHHH
Q 008816 518 FLLHI 522 (552)
Q Consensus 518 eL~kl 522 (552)
.+.++
T Consensus 170 ~l~~~ 174 (213)
T cd03235 170 DIYEL 174 (213)
T ss_pred HHHHH
Confidence 44333
No 88
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.5e-11 Score=122.08 Aligned_cols=111 Identities=18% Similarity=0.114 Sum_probs=77.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++++.+..|+|.+.+.++....
T Consensus 19 ~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 58899999999999 99999999999999999999999999999988766542110
Q ss_pred --HHHHHH------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 458 --AVEQLR------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 458 --a~eqL~------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
..+.+. .+.+.+++.-.. ........+..+.+|++|+..+|+++|+|+|....+..
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~ 174 (233)
T cd03258 97 RTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174 (233)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHH
Confidence 111111 111122222110 01122334445789999999999999999999766544
No 89
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=132.04 Aligned_cols=112 Identities=21% Similarity=0.137 Sum_probs=80.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~e 460 (552)
.+|++++|.+.+|+ +++|+||||||||||++.|++++.+..|+|.+.+.+... ....+
T Consensus 17 ~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 17 VISKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH
Confidence 47899999999999 999999999999999999999999999999886654311 01111
Q ss_pred H------------------HHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 461 Q------------------LRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 461 q------------------L~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
. ...+.+.+++.-+. ........+..|.+|++|+..+|+++|+|||....|...
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~ 168 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 1 12223334443211 112344556668999999999999999999997665543
No 90
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.31 E-value=2.7e-11 Score=116.31 Aligned_cols=133 Identities=15% Similarity=0.098 Sum_probs=86.6
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC-C---cchHHHHHHHHHHHcCCce-
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-F---RSGAVEQLRTHARRLQVPI- 473 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~-~---r~ga~eqL~~~~~~l~v~~- 473 (552)
...+|++++|.+.+|+ +++|+|||||||||+++.|.. ..|.|.+.+... + +...+.|+ .+.+.+++..
T Consensus 7 ~~~~l~~isl~i~~G~--~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~-~~l~~~~L~~~ 79 (176)
T cd03238 7 NVHNLQNLDVSIPLNV--LVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQL-QFLIDVGLGYL 79 (176)
T ss_pred eeeeecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhHH-HHHHHcCCCcc
Confidence 4568899999999999 999999999999999998852 467777654421 1 12233443 3445566542
Q ss_pred --eecCCCCCHHHHHHHHHHHHHhCC--CCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEec
Q 008816 474 --FEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 474 --~~~~~~~dp~~iar~aIa~a~~~~--~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
.............+.++++|+..+ ++++|+|||....+.......+..|.........+.++++.
T Consensus 80 ~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 80 TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 122234556677789999999999 99999999997666544333333333222223444444444
No 91
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.31 E-value=1.8e-11 Score=120.11 Aligned_cols=112 Identities=22% Similarity=0.211 Sum_probs=77.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------------------chHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------------------SGAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------------------~ga~ 459 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.. ....
T Consensus 19 ~il~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 48899999999999 999999999999999999999999999999886654311 0111
Q ss_pred HHHH------------------HHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQLR------------------THARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL~------------------~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+. .+.+.+++.-+ . ........+..+.+|++|+..+|+++|+|+|+...+...
T Consensus 97 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 171 (218)
T cd03266 97 ENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171 (218)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHH
Confidence 1111 11122233211 0 011223344447899999999999999999997666543
No 92
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.31 E-value=1.1e-11 Score=114.78 Aligned_cols=100 Identities=21% Similarity=0.203 Sum_probs=78.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 480 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~ 480 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+. ..+.+..+ .
T Consensus 14 ~~l~~~~~~~~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------------~~i~~~~~---l 71 (144)
T cd03221 14 LLLKDISLTINPGD--RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------------VKIGYFEQ---L 71 (144)
T ss_pred eEEEeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------------EEEEEEcc---C
Confidence 47899999999999 99999999999999999999999999999988652 11222221 4
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 481 dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
...+..+.+|++|+..+++++|+|+|....+. .....+.+++
T Consensus 72 S~G~~~rv~laral~~~p~illlDEP~~~LD~-~~~~~l~~~l 113 (144)
T cd03221 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDL-ESIEALEEAL 113 (144)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH-HHHHHHHHHH
Confidence 56667788999999999999999999966554 3344444433
No 93
>PRK10908 cell division protein FtsE; Provisional
Probab=99.31 E-value=1.6e-11 Score=121.14 Aligned_cols=112 Identities=15% Similarity=0.076 Sum_probs=77.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++++.+..|+|.+.+.++....
T Consensus 16 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 16 QALQGVTFHMRPGE--MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred eEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 57899999999999 99999999999999999999999999999988765532110
Q ss_pred --HHHHHH------------------HHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 --AVEQLR------------------THARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 --a~eqL~------------------~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+. .+.+.+++.-. . ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 011110 11112222110 0 011223344457899999999999999999997766543
No 94
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.31 E-value=1.3e-11 Score=127.80 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=93.5
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga 458 (552)
..+|++++|.+.+|+ +++|+||||+||||++++|++.+.+..|+|.+.+.+..+. ..
T Consensus 15 ~~~l~~is~~i~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 15 QNALDEVSFEAQKGR--IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred EEEEEEeEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 358999999999999 9999999999999999999999999999998877654210 11
Q ss_pred HHHHHHHH------------------HHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHH
Q 008816 459 VEQLRTHA------------------RRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLF 518 (552)
Q Consensus 459 ~eqL~~~~------------------~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~e 518 (552)
.+.+..++ +.+++.-.. ...........+.+|++|+..+|+++|+|+|+...+... .+.
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~-~~~ 171 (301)
T TIGR03522 93 REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQ-LVE 171 (301)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH-HHH
Confidence 22222211 112222110 011223344457899999999999999999997665543 334
Q ss_pred HHHHhhhhccccEEEEEEecCcccHHHHHHH
Q 008816 519 LLHIYLHTVCEHFVNIITFRGMWSFDCLKRK 549 (552)
Q Consensus 519 L~kl~~~~~~~~~~~ii~~~~~f~~~~l~~~ 549 (552)
+.+++..... ....++.....-+...+|++
T Consensus 172 l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 172 IRNVIKNIGK-DKTIILSTHIMQEVEAICDR 201 (301)
T ss_pred HHHHHHHhcC-CCEEEEEcCCHHHHHHhCCE
Confidence 4333322222 23444444444455555543
No 95
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.4e-11 Score=130.29 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=83.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc--------------------hHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--------------------GAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~--------------------ga~e 460 (552)
.+|++++|.+.+|+ +++|+||||||||||+++||+++.++.|+|.+.+.++... ...+
T Consensus 20 ~~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~e 97 (351)
T PRK11432 20 TVIDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGE 97 (351)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHH
Confidence 47899999999999 9999999999999999999999999999998877653210 0011
Q ss_pred ------------------HHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHH
Q 008816 461 ------------------QLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLL 520 (552)
Q Consensus 461 ------------------qL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~ 520 (552)
....+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|+|....+. ....++.
T Consensus 98 Ni~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~-~~r~~l~ 176 (351)
T PRK11432 98 NVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA-NLRRSMR 176 (351)
T ss_pred HHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH-HHHHHHH
Confidence 1112333334432211 123445566689999999999999999999966544 4333443
Q ss_pred H
Q 008816 521 H 521 (552)
Q Consensus 521 k 521 (552)
.
T Consensus 177 ~ 177 (351)
T PRK11432 177 E 177 (351)
T ss_pred H
Confidence 3
No 96
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=2e-11 Score=120.65 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=89.4
Q ss_pred CcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCce----
Q 008816 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI---- 473 (552)
Q Consensus 398 ~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~---- 473 (552)
....+|++|+|.+++|+ .|+|||++|+||||++++|++...+..|.|.+.+.++...... +++.+.+..|+-+
T Consensus 15 ~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k-~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK-ELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH-HHHHHHHhceeEeccCC
Confidence 34568999999999999 9999999999999999999999999999999998876433221 1333322221100
Q ss_pred ----------------------------e----------------------ecCCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 008816 474 ----------------------------F----------------------EKGYEKDPAIVAKEAIQEATRNGSDVVLV 503 (552)
Q Consensus 474 ----------------------------~----------------------~~~~~~dp~~iar~aIa~a~~~~~DvVII 503 (552)
+ .+.......+-.|.+|++|+.+++.+||-
T Consensus 92 Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILA 171 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA 171 (258)
T ss_pred cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEec
Confidence 0 00111222333489999999999999999
Q ss_pred eCCCCCCChH---HHHHHHHHHhh
Q 008816 504 DTAGRMQVII---EYYLFLLHIYL 524 (552)
Q Consensus 504 DtpGr~~~~~---~lm~eL~kl~~ 524 (552)
|||....++. ..|+.|.++..
T Consensus 172 DEPvasLDp~~a~~Vm~~l~~in~ 195 (258)
T COG3638 172 DEPVASLDPESAKKVMDILKDINQ 195 (258)
T ss_pred CCcccccChhhHHHHHHHHHHHHH
Confidence 9999877765 46666766654
No 97
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2e-11 Score=125.58 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=80.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|.|.+.+.++..
T Consensus 21 ~~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 21 KALDNVNIEIEDGE--FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 48999999999999 999999999999999999999999999988776644311
Q ss_pred chHHHHH------------------HHHHHHcCCc---eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 456 SGAVEQL------------------RTHARRLQVP---IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 456 ~ga~eqL------------------~~~~~~l~v~---~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
....+.+ ....+.+++. +.. ...........|.+|++|+..+|+++|+|+|+...+..
T Consensus 99 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~ 178 (287)
T PRK13637 99 ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178 (287)
T ss_pred ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence 0011111 1122233443 111 12234455666899999999999999999999776654
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 179 ~ 179 (287)
T PRK13637 179 G 179 (287)
T ss_pred H
Confidence 3
No 98
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.30 E-value=3.3e-11 Score=114.76 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=93.6
Q ss_pred HHHHHhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC---------cchHH
Q 008816 389 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAV 459 (552)
Q Consensus 389 ~L~~il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~---------r~ga~ 459 (552)
.|.+-++ ..++|+++++....|. +|.|+|.+|+||||+++||..+-.+..|+|.+.+..+. .++..
T Consensus 11 dlHK~~G---~~eVLKGvSL~A~~Gd--VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 11 DLHKRYG---EHEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred HHHhhcc---cchhhcceeeecCCCC--EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 3445554 4679999999999999 99999999999999999999999999999988765432 11122
Q ss_pred HHHHH---------------------------------------------HHHHcCCceeecCCC--CCHHHHHHHHHHH
Q 008816 460 EQLRT---------------------------------------------HARRLQVPIFEKGYE--KDPAIVAKEAIQE 492 (552)
Q Consensus 460 eqL~~---------------------------------------------~~~~l~v~~~~~~~~--~dp~~iar~aIa~ 492 (552)
.|++. +..++|+.-....|. ....+-.|.+|++
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence 23322 222222221111111 1223334789999
Q ss_pred HHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhh-hccccEEEEE
Q 008816 493 ATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLH-TVCEHFVNII 535 (552)
Q Consensus 493 a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~-~~~~~~~~ii 535 (552)
|+...|+++++|+|+... +.++..+.-+++.. ......+.++
T Consensus 166 aLameP~vmLFDEPTSAL-DPElVgEVLkv~~~LAeEgrTMv~V 208 (256)
T COG4598 166 ALAMEPEVMLFDEPTSAL-DPELVGEVLKVMQDLAEEGRTMVVV 208 (256)
T ss_pred HHhcCCceEeecCCcccC-CHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 999999999999999654 55666666665543 3333343333
No 99
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.30 E-value=2.4e-11 Score=121.31 Aligned_cols=121 Identities=15% Similarity=0.207 Sum_probs=80.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc----------------------ch
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----------------------SG 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r----------------------~g 457 (552)
..+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.+... ..
T Consensus 34 ~~il~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 34 VEALKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred eeeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCc
Confidence 458999999999999 999999999999999999999999988888775543210 00
Q ss_pred HHHHHH------------------HHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHH
Q 008816 458 AVEQLR------------------THARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYL 517 (552)
Q Consensus 458 a~eqL~------------------~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~ 517 (552)
..+.+. .+.+.+++.-. . ........+..+.+|++|+..+|+++|+|+|+...+... .+
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~-~~ 190 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA-QE 190 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH-HH
Confidence 111111 11111222210 0 011233344557889999999999999999997665543 33
Q ss_pred HHHHHh
Q 008816 518 FLLHIY 523 (552)
Q Consensus 518 eL~kl~ 523 (552)
.+.+++
T Consensus 191 ~l~~~l 196 (236)
T cd03267 191 NIRNFL 196 (236)
T ss_pred HHHHHH
Confidence 444433
No 100
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.30 E-value=1.7e-11 Score=119.55 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=78.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc--------------------hHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--------------------GAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~--------------------ga~e 460 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++... ...+
T Consensus 14 ~~l~~~~~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 14 RVLDDISLHVKKGE--IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARE 91 (208)
T ss_pred EeEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHH
Confidence 48899999999999 9999999999999999999999999999998876553210 0111
Q ss_pred HHH--------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 461 QLR--------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 461 qL~--------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
.+. .+.+.+++.-.. ........+..+.+|++|+..+|+++|+|+|+...+....
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 162 (208)
T cd03268 92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGI 162 (208)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHH
Confidence 111 111222221110 0112233444478899999999999999999977665443
No 101
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=2.2e-11 Score=118.80 Aligned_cols=112 Identities=20% Similarity=0.074 Sum_probs=79.4
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh---hCCceEEEeeecCCcch------------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTFRSG------------------ 457 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~---~~ggkVll~~~D~~r~g------------------ 457 (552)
...++++++|.+.+|+ +++|+|+||+||||+++.|++.+. +..|.|.+.+.++....
T Consensus 19 ~~~il~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (202)
T cd03233 19 KIPILKDFSGVVKPGE--MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFP 96 (202)
T ss_pred CceeeeeEEEEECCCc--EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCC
Confidence 3468999999999999 999999999999999999999998 78999998777653211
Q ss_pred ---HHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 458 ---AVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 458 ---a~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+.... ... .-.........+..+.+|++|+..+|+++|+|||....+....
T Consensus 97 ~~tv~~~l~~~~-~~~--~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~ 154 (202)
T cd03233 97 TLTVRETLDFAL-RCK--GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154 (202)
T ss_pred CCcHHHHHhhhh-hhc--cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHH
Confidence 001111100 000 0001112344556688999999999999999999977665433
No 102
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=2e-11 Score=121.84 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=78.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~e 460 (552)
.+|++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+ ....+
T Consensus 16 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 16 VALDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred EeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence 48899999999999 999999999999999999999999888988876544210 00111
Q ss_pred HH----------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 461 QL----------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 461 qL----------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 171 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 11 1112222332110 111234455558899999999999999999997766543
No 103
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.30 E-value=2e-11 Score=121.53 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=78.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------------------chHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------------------SGAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------------------~ga~ 459 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|.|.+.+.++.. ....
T Consensus 15 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~ 92 (236)
T TIGR03864 15 RALDDVSFTVRPGE--FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVR 92 (236)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHH
Confidence 48899999999999 999999999999999999999999999999876654310 0011
Q ss_pred HHH------------------HHHHHHcCCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQL------------------RTHARRLQVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL------------------~~~~~~l~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+ ..+.+.+++.-. .........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 167 (236)
T TIGR03864 93 QNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167 (236)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH
Confidence 111 111222233211 0111234455558899999999999999999997766543
No 104
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.29 E-value=2.2e-11 Score=120.72 Aligned_cols=113 Identities=19% Similarity=0.085 Sum_probs=79.8
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc----------chHHHHHHH-----
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----------SGAVEQLRT----- 464 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r----------~ga~eqL~~----- 464 (552)
..++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+.+. ....+.+..
T Consensus 35 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~ 112 (224)
T cd03220 35 FWALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLL 112 (224)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHc
Confidence 458999999999999 999999999999999999999999999999887654321 011122211
Q ss_pred -------------HHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 465 -------------HARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 465 -------------~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+++.-.. ........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 113 GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11122222110 011233445557899999999999999999997776654
No 105
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=3.2e-11 Score=122.84 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=79.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc-----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------------------- 456 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------------------- 456 (552)
..+|++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.++...
T Consensus 37 ~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 114 (269)
T cd03294 37 TVGVNDVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114 (269)
T ss_pred ceEeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccC
Confidence 457899999999999 9999999999999999999999999999888765443110
Q ss_pred ---hHHHHH------------------HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 457 ---GAVEQL------------------RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 457 ---ga~eqL------------------~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
...+.+ ..+.+.+++.-+ . ........+..+.+|++|+..+|+++|+|||+...+..
T Consensus 115 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~ 194 (269)
T cd03294 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194 (269)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 001111 111222333211 1 11233445556889999999999999999999766554
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 195 ~ 195 (269)
T cd03294 195 I 195 (269)
T ss_pred H
Confidence 3
No 106
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.29 E-value=3.8e-11 Score=116.73 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=81.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+..+. ...
T Consensus 15 ~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 15 PLLQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLR 92 (200)
T ss_pred eEEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHH
Confidence 48899999999999 9999999999999999999999999999998866543210 011
Q ss_pred HHH-------------HHHHHHcCCcee-ec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 460 EQL-------------RTHARRLQVPIF-EK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 460 eqL-------------~~~~~~l~v~~~-~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
+.+ ..+.+.++++.. .. .......+..+.+|++|+..+|+++|+|+|....+.. ..+.+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~-~~~~l~~~ 169 (200)
T PRK13540 93 ENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL-SLLTIITK 169 (200)
T ss_pred HHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH-HHHHHHHH
Confidence 111 112222233211 11 1123445555889999999999999999999766544 33344333
No 107
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.29 E-value=2.6e-11 Score=120.95 Aligned_cols=51 Identities=22% Similarity=0.351 Sum_probs=47.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.++++++|.+.+|+ +++|+|||||||||+++.|++++.+..|+|.+.+.++
T Consensus 16 ~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (243)
T TIGR02315 16 QALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI 66 (243)
T ss_pred ceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEh
Confidence 47899999999999 9999999999999999999999999999998877654
No 108
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.29 E-value=3.2e-11 Score=118.60 Aligned_cols=113 Identities=19% Similarity=0.133 Sum_probs=78.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++....
T Consensus 19 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 19 RVLKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred EeEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 48899999999999 99999999999999999999999999999988765432110
Q ss_pred ---HHHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 ---AVEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 ---a~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+ ..+.+.+++.-.. ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 176 (221)
T TIGR02211 97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 (221)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence 01111 0111122322110 011233344457899999999999999999997665544
Q ss_pred H
Q 008816 515 Y 515 (552)
Q Consensus 515 l 515 (552)
.
T Consensus 177 ~ 177 (221)
T TIGR02211 177 A 177 (221)
T ss_pred H
Confidence 3
No 109
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.29 E-value=3.1e-11 Score=118.64 Aligned_cols=145 Identities=13% Similarity=0.096 Sum_probs=90.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------------chHHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------------------SGAVEQ 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------------------~ga~eq 461 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.. ....+.
T Consensus 25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~ 102 (214)
T PRK13543 25 PVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLEN 102 (214)
T ss_pred eeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHH
Confidence 47899999999999 999999999999999999999999998988876543210 011111
Q ss_pred H---------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 462 L---------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 462 L---------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
+ ..+...+++.-.. ........+..+.++++++..+|+++|+|+|+...+. ...+.+.++..
T Consensus 103 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~-~~~~~l~~~l~ 181 (214)
T PRK13543 103 LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL-EGITLVNRMIS 181 (214)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-HHHHHHHHHHH
Confidence 1 1122223332110 0112344455688999999999999999999966554 34444444433
Q ss_pred hhccccEEEEEEecCcccHHHHHH
Q 008816 525 HTVCEHFVNIITFRGMWSFDCLKR 548 (552)
Q Consensus 525 ~~~~~~~~~ii~~~~~f~~~~l~~ 548 (552)
.........++......+...+++
T Consensus 182 ~~~~~~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 182 AHLRGGGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred HHHhCCCEEEEEecChhhhhhhcc
Confidence 221222334444444444444443
No 110
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.29 E-value=1.7e-11 Score=122.22 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=80.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHH-------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE------------------- 460 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~e------------------- 460 (552)
..++++++|.++.|+ +++|+||+||||||++++|.+++.++.|+|.+.+.|+.....++
T Consensus 14 ~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T 91 (309)
T COG1125 14 KKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT 91 (309)
T ss_pred ceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCcc
Confidence 457889999999999 99999999999999999999999999999999999875333322
Q ss_pred ---------HHHH------------HHHHcCCce--eecCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 461 ---------QLRT------------HARRLQVPI--FEKGY--EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 461 ---------qL~~------------~~~~l~v~~--~~~~~--~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
+|.. +...++++- |...| ..+..+-.|..+++|+..+|+++|+|+|-...+.
T Consensus 92 v~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDp 168 (309)
T COG1125 92 VAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168 (309)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccCh
Confidence 1111 111123321 11111 1122233388999999999999999999765554
No 111
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2.7e-11 Score=123.91 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=78.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc-----------------------h
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS-----------------------G 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~-----------------------g 457 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.+. .
T Consensus 18 ~~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 18 EALNNINFIAPRNS--RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred ceeeEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 48899999999999 9999999999999999999999999999998866553211 0
Q ss_pred HHHHHH------------------HHHHHcCCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 AVEQLR------------------THARRLQVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 a~eqL~------------------~~~~~l~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+. .+.+.+++.-. ............+.+|++|+..+|+++|+|+|+...+...
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~ 172 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 111111 11111222110 0112234445558899999999999999999997766543
No 112
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.29 E-value=3.7e-11 Score=118.80 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=81.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.++++++|.+.+|+ +++|+|+||+|||||++.|++++.+..|.|.+.+.++...
T Consensus 24 ~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 24 SILTGVELVVKRGE--TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEEeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 48999999999999 9999999999999999999999999889888765543210
Q ss_pred --hHHHHH------------------HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 457 --GAVEQL------------------RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 457 --ga~eqL------------------~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
...+.+ ..+.+.+++.-. . ........+..+.+|++|+..+++++|+|+|+...+..
T Consensus 102 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~- 180 (228)
T PRK10584 102 TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ- 180 (228)
T ss_pred CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-
Confidence 001111 111122233211 0 11123344555789999999999999999999766554
Q ss_pred HHHHHHHHh
Q 008816 515 YYLFLLHIY 523 (552)
Q Consensus 515 lm~eL~kl~ 523 (552)
..+.+.+++
T Consensus 181 ~~~~l~~~l 189 (228)
T PRK10584 181 TGDKIADLL 189 (228)
T ss_pred HHHHHHHHH
Confidence 344444433
No 113
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.28 E-value=3.5e-11 Score=119.53 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=77.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+..
T Consensus 14 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (236)
T cd03219 14 VALDDVSFSVRPGE--IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELT 91 (236)
T ss_pred EEecCceEEecCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCC
Confidence 48899999999999 99999999999999999999999998998887665432100
Q ss_pred HHHHH----------------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 458 AVEQL----------------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 458 a~eqL----------------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
..+.+ ..+.+.+++.-.. ...........+.+|++|+..+|+++|+|||+
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 01111 1111122222110 01122334445789999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 172 ~~LD~~~ 178 (236)
T cd03219 172 AGLNPEE 178 (236)
T ss_pred ccCCHHH
Confidence 7766543
No 114
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.28 E-value=4e-11 Score=116.32 Aligned_cols=120 Identities=15% Similarity=0.110 Sum_probs=81.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.++... ...
T Consensus 14 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 14 MLFEGLSFTLNAGE--ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSAL 91 (198)
T ss_pred EEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHH
Confidence 47899999999999 9999999999999999999999999999888766543100 011
Q ss_pred HHH--------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 460 EQL--------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 460 eqL--------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
+.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|+|+...+.. ....+.+++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~-~~~~l~~~l 170 (198)
T TIGR01189 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKA-GVALLAGLL 170 (198)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH-HHHHHHHHH
Confidence 111 1111222332110 01122334455789999999999999999999776654 334444433
No 115
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=3.1e-11 Score=120.09 Aligned_cols=112 Identities=19% Similarity=0.169 Sum_probs=77.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++++.+..|.|.+.+.++.+..
T Consensus 15 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 15 KALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred EEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 47899999999999 99999999999999999999999999999888765532111
Q ss_pred --HHHHHH--------------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 458 --AVEQLR--------------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 458 --a~eqL~--------------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
..+.+. .+.+.+++.-.. ........+..+.+|++|+..+|+++|+|||+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 001110 011112221110 11123334444789999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 173 ~~LD~~~ 179 (241)
T cd03256 173 ASLDPAS 179 (241)
T ss_pred ccCCHHH
Confidence 7766543
No 116
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.28 E-value=1.1e-11 Score=123.10 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=50.4
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
...++++++|.+.+|+ ++++|||||+||||++++|.+++++++|+|.+.+.|+-
T Consensus 16 Gl~Al~~Vsl~v~~Ge--i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it 69 (250)
T COG0411 16 GLTAVNDVSLEVRPGE--IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT 69 (250)
T ss_pred CEEEEeceeEEEcCCe--EEEEECCCCCCceeeeeeecccccCCCceEEECCcccC
Confidence 3567899999999999 99999999999999999999999999999999998864
No 117
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.28 E-value=2.9e-11 Score=120.26 Aligned_cols=110 Identities=17% Similarity=0.166 Sum_probs=76.9
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-----------------chHHHHHH--
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-----------------SGAVEQLR-- 463 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-----------------~ga~eqL~-- 463 (552)
+++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++.. ....+.+.
T Consensus 1 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGE--FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence 467899999999 999999999999999999999999999999886654310 01112111
Q ss_pred ------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 464 ------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 464 ------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+.+++.-.. ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 112222332110 112234455568899999999999999999997665543
No 118
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=3.9e-11 Score=119.27 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=81.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.+..
T Consensus 23 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 23 DVLHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 58999999999999 99999999999999999999999999999988765542111
Q ss_pred ---HHHHHH------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 ---AVEQLR------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 ---a~eqL~------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+. .+.+.+++.-.. ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 111111 111222332110 011223344457889999999999999999997766544
Q ss_pred HHHHHHHHh
Q 008816 515 YYLFLLHIY 523 (552)
Q Consensus 515 lm~eL~kl~ 523 (552)
...+.+++
T Consensus 181 -~~~l~~~l 188 (233)
T PRK11629 181 -ADSIFQLL 188 (233)
T ss_pred -HHHHHHHH
Confidence 33343333
No 119
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.28 E-value=2.7e-11 Score=130.34 Aligned_cols=113 Identities=21% Similarity=0.192 Sum_probs=79.8
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHH-------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE------------------- 460 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~e------------------- 460 (552)
..+|++++|.+.+|+ +++|+||||+||||+++.|++++.+..|+|.+.+.++.+....+
T Consensus 16 ~~vL~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 16 TTVLDGVDLSVREGS--LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred EEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC
Confidence 358999999999999 99999999999999999999999999999998877654211110
Q ss_pred -------------------------HHHHHHHHcCCceee-c-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 461 -------------------------QLRTHARRLQVPIFE-K-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 461 -------------------------qL~~~~~~l~v~~~~-~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
......+.+++.-+. . .......+..|.+|++|+.++|+++|+|||+...+..
T Consensus 94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~ 173 (402)
T PRK09536 94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173 (402)
T ss_pred HHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 001111122221100 0 1122334444789999999999999999999776654
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 174 ~ 174 (402)
T PRK09536 174 H 174 (402)
T ss_pred H
Confidence 3
No 120
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.28 E-value=1.7e-11 Score=139.88 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=94.9
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------- 457 (552)
.++|+|+++.+++|+ .|+|||++||||||+++.|.+++.+..|+|.+.+.|.-...
T Consensus 486 ~~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI 563 (709)
T COG2274 486 PPVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSI 563 (709)
T ss_pred cchhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcH
Confidence 478999999999999 99999999999999999999999999999999888753111
Q ss_pred -----------HHHHHHHHHHH-------------cCCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 458 -----------AVEQLRTHARR-------------LQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 458 -----------a~eqL~~~~~~-------------l~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
..|++..-++. ++.++-+.+....-.+..|.+|++|+..+|.++|+|||+...|++
T Consensus 564 ~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~ 643 (709)
T COG2274 564 RENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPE 643 (709)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHh
Confidence 11222222221 123344555666777788999999999999999999999888776
Q ss_pred HHHHHHHHHhhhh
Q 008816 514 EYYLFLLHIYLHT 526 (552)
Q Consensus 514 ~lm~eL~kl~~~~ 526 (552)
.....+..|....
T Consensus 644 sE~~I~~~L~~~~ 656 (709)
T COG2274 644 TEAIILQNLLQIL 656 (709)
T ss_pred HHHHHHHHHHHHh
Confidence 6555555554433
No 121
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.28 E-value=6.1e-11 Score=117.46 Aligned_cols=120 Identities=17% Similarity=0.139 Sum_probs=83.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+. ...
T Consensus 21 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 98 (225)
T PRK10247 21 KILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVY 98 (225)
T ss_pred eeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHH
Confidence 48899999999999 9999999999999999999999999999888766543110 011
Q ss_pred HH----------------HHHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHH
Q 008816 460 EQ----------------LRTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLL 520 (552)
Q Consensus 460 eq----------------L~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~ 520 (552)
+. ...+.+.+++. +.. ...........+.+|++|+..+|+++|+|+|+...+.. ..+.+.
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~-~~~~l~ 177 (225)
T PRK10247 99 DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES-NKHNVN 177 (225)
T ss_pred HHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH-HHHHHH
Confidence 11 11222333442 111 11234445566889999999999999999999766554 344444
Q ss_pred HHh
Q 008816 521 HIY 523 (552)
Q Consensus 521 kl~ 523 (552)
++.
T Consensus 178 ~~l 180 (225)
T PRK10247 178 EII 180 (225)
T ss_pred HHH
Confidence 443
No 122
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=4.1e-11 Score=122.40 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=78.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------h--------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------G-------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------g-------------- 457 (552)
.++++++|.+.+|+ +++|+|+||+||||++..|++++.+..|.|.+.+.++... +
T Consensus 19 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 19 KALKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred eeeeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 48999999999999 9999999999999999999999999999998876553110 0
Q ss_pred HHHHHH------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 458 AVEQLR------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 458 a~eqL~------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+. .+.+.+++.-+. ...........+.+|++|+..+|+++|+|+|+...+....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 174 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ 174 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 011111 111112221100 0112333444588999999999999999999977665443
No 123
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.28 E-value=3.2e-11 Score=119.79 Aligned_cols=111 Identities=12% Similarity=0.182 Sum_probs=76.4
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh----CCceEEEeeecCCc-------c--------------
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTFR-------S-------------- 456 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~----~ggkVll~~~D~~r-------~-------------- 456 (552)
++++++|.+.+|+ +++|+||||+||||+++.|++.+.+ ..|+|.+.+.++.+ .
T Consensus 1 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGE--VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcc
Confidence 4678999999999 9999999999999999999999988 78888776644210 0
Q ss_pred -hHHHHH------------------HHHHHHcCCc----eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 457 -GAVEQL------------------RTHARRLQVP----IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 457 -ga~eqL------------------~~~~~~l~v~----~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
...+.+ ..+.+.++++ +.. ........+..+.+|++|+..+|+++|+|+|+...+.
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 000111 0111222332 111 1122344555688999999999999999999987765
Q ss_pred HH
Q 008816 513 IE 514 (552)
Q Consensus 513 ~~ 514 (552)
..
T Consensus 159 ~~ 160 (230)
T TIGR02770 159 VN 160 (230)
T ss_pred HH
Confidence 44
No 124
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.27 E-value=2.9e-11 Score=128.06 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=79.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc--------------------hHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--------------------GAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~--------------------ga~e 460 (552)
.+|++++|.+.+|+ +++|+||||||||||+++|++++.+..|+|.+.+.|+... ...+
T Consensus 16 ~~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 16 QVLNDISLDIPSGQ--MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFD 93 (353)
T ss_pred EEEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHH
Confidence 47899999999999 9999999999999999999999999999999877654210 0111
Q ss_pred H----------------------HHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 461 Q----------------------LRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 461 q----------------------L~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
. ...+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|+|....+..
T Consensus 94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~ 170 (353)
T PRK10851 94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170 (353)
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 1 111222333321111 1123445555899999999999999999999766553
No 125
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.27 E-value=5.1e-11 Score=115.52 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=78.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH--hhCCceEEEeeecCCcchHHHHHHHHHHHcCC-----c
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTFRSGAVEQLRTHARRLQV-----P 472 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l--~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v-----~ 472 (552)
..++++++|.+.+|+ +++|+||||+||||++..|++.+ .+..|.|.+.+.++... +. .+.+++ .
T Consensus 22 ~~~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~----~~---~~~i~~~~q~~~ 92 (194)
T cd03213 22 KQLLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR----SF---RKIIGYVPQDDI 92 (194)
T ss_pred ccceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH----hh---hheEEEccCccc
Confidence 358899999999999 99999999999999999999999 89999999887765320 00 011100 0
Q ss_pred eee------------cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 473 IFE------------KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 473 ~~~------------~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
++. ........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 93 ~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 146 (194)
T cd03213 93 LHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146 (194)
T ss_pred CCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 000 000234455667899999999999999999997665543
No 126
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.27 E-value=2.7e-11 Score=129.33 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=80.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc--------------------hHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--------------------GAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~--------------------ga~e 460 (552)
.++++++|.+..|+ +++|+||||||||||+++||+++.+..|+|.+.+.++... ...+
T Consensus 28 ~~l~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e 105 (375)
T PRK09452 28 EVISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE 105 (375)
T ss_pred EEEeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHH
Confidence 47889999999999 9999999999999999999999999999998877654210 0111
Q ss_pred ------------------HHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 461 ------------------QLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 461 ------------------qL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+..+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|+|....+..
T Consensus 106 Ni~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~ 178 (375)
T PRK09452 106 NVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178 (375)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHH
Confidence 1122233334432111 1223445556899999999999999999999766543
No 127
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.27 E-value=5e-11 Score=116.60 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=77.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------------chHHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------------------SGAVEQ 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------------------~ga~eq 461 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+... ....+.
T Consensus 16 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 16 VLFSGLSFTLAAGE--ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAEN 93 (207)
T ss_pred EEEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHH
Confidence 47899999999999 999999999999999999999999999999886654210 001111
Q ss_pred HH--------------HHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 462 LR--------------THARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 462 L~--------------~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+. .+.+.+++.-... ..........+.+|++|+..+|+++|+|+|+...+..
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 161 (207)
T PRK13539 94 LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161 (207)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 11 1122223321100 1123344555889999999999999999999766554
No 128
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=4.7e-11 Score=122.31 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=79.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA---------------------- 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga---------------------- 458 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|.|.+.+.++.+...
T Consensus 21 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 21 YTLNDVSFHVKQGE--WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred eeeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence 48899999999999 999999999999999999999999999999887766421110
Q ss_pred -HHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 -VEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 -~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|+|+...+...
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 175 (279)
T PRK13650 99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175 (279)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 0000 0111112222110 011233344558899999999999999999997776643
No 129
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=4.3e-11 Score=122.26 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=78.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+..+..
T Consensus 16 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 16 PALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred ceeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 48999999999999 99999999999999999999999999999988765542110
Q ss_pred -HHHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 458 -AVEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 458 -a~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+ ....+.+++.-+. ...........+.+|++|+..+|+++|+|+|+...+....
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~ 172 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 00000 0011112221110 1112334455578999999999999999999987766543
No 130
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.27 E-value=2.9e-11 Score=128.52 Aligned_cols=111 Identities=15% Similarity=0.214 Sum_probs=79.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHH---------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV--------------------- 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~--------------------- 459 (552)
.++++++|.+.+|+ +++|+||||||||||+++|++++.+..|+|.+.+.|+......
T Consensus 7 ~~l~~vs~~i~~Ge--i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 7 KGVNDADLAIAKGE--IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred eeEEeeEEEEcCCC--EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 47899999999999 9999999999999999999999999999999988765422111
Q ss_pred -----HHH------------------HHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 460 -----EQL------------------RTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 460 -----eqL------------------~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+.+ ..+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|+|....+..
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111 11122223321111 1122334445899999999999999999999766553
No 131
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.27 E-value=3.3e-11 Score=118.49 Aligned_cols=112 Identities=19% Similarity=0.105 Sum_probs=76.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.+.....
T Consensus 14 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (222)
T cd03224 14 QILFGVSLTVPEGE--IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELT 91 (222)
T ss_pred eEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCc
Confidence 47899999999999 99999999999999999999999999999988765532110
Q ss_pred HHHHHHH----------------HHHHc-CCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 AVEQLRT----------------HARRL-QVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 a~eqL~~----------------~~~~l-~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+.. +.+.+ ++.-. . ...........+.+|++|+..+|+++|+|+|+...+...
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 167 (222)
T cd03224 92 VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 167 (222)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHH
Confidence 1111110 00111 01000 0 001123344447889999999999999999997665543
No 132
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.27 E-value=3.7e-11 Score=122.15 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=81.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------ch--------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SG-------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------~g-------------- 457 (552)
.+|++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+ .+
T Consensus 27 ~~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 27 EAVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred ceeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence 58899999999999 999999999999999999999999999998886654321 00
Q ss_pred -HHHH-------------------HHHHHHHcCCc-eeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 -AVEQ-------------------LRTHARRLQVP-IFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 -a~eq-------------------L~~~~~~l~v~-~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+. ...+.+.+++. .... .......+..+.+|++|+..+|+++|+|||....+..
T Consensus 105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~- 183 (267)
T PRK15112 105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMS- 183 (267)
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHH-
Confidence 0000 11112223431 1111 1223445566889999999999999999999766553
Q ss_pred HHHHHHH
Q 008816 515 YYLFLLH 521 (552)
Q Consensus 515 lm~eL~k 521 (552)
....+.+
T Consensus 184 ~~~~l~~ 190 (267)
T PRK15112 184 MRSQLIN 190 (267)
T ss_pred HHHHHHH
Confidence 3334433
No 133
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.27 E-value=6.4e-11 Score=117.06 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=79.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH-----hhCCceEEEeeecCCcc-------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-----LQHKVSVMMAACDTFRS------------------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l-----~~~ggkVll~~~D~~r~------------------- 456 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++++ .+..|+|.+.+.++.+.
T Consensus 14 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 14 HALKDISLDIPKGE--ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 47899999999999 99999999999999999999999 88889888866543110
Q ss_pred ----hHHHHH-------------------HHHHHHcCCcee-ec---CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 457 ----GAVEQL-------------------RTHARRLQVPIF-EK---GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 457 ----ga~eqL-------------------~~~~~~l~v~~~-~~---~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
...+.+ ....+.+++.-. .. .......+..+.+|++|+..+|+++|+|||+..
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 001111 111222233211 11 123455566688999999999999999999977
Q ss_pred CChHHH
Q 008816 510 QVIIEY 515 (552)
Q Consensus 510 ~~~~~l 515 (552)
.+....
T Consensus 172 LD~~~~ 177 (227)
T cd03260 172 LDPIST 177 (227)
T ss_pred CCHHHH
Confidence 665443
No 134
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.27 E-value=3.1e-11 Score=119.50 Aligned_cols=120 Identities=21% Similarity=0.161 Sum_probs=79.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++....
T Consensus 14 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 14 HILRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred EEecceeeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 47899999999999 99999999999999999999999999999988765542111
Q ss_pred HHHHHHHH---------------HHHcC-Ccee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHH
Q 008816 458 AVEQLRTH---------------ARRLQ-VPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFL 519 (552)
Q Consensus 458 a~eqL~~~---------------~~~l~-v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL 519 (552)
..+.+... .+.++ +.-. ............+.+|++|+..+|+++|+|+|+...+.. ....+
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~-~~~~l 170 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS-IIKDI 170 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH-HHHHH
Confidence 01111100 00001 0000 000112333444788999999999999999999766544 33344
Q ss_pred HHHh
Q 008816 520 LHIY 523 (552)
Q Consensus 520 ~kl~ 523 (552)
.+++
T Consensus 171 ~~~l 174 (230)
T TIGR03410 171 GRVI 174 (230)
T ss_pred HHHH
Confidence 4433
No 135
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=4.1e-11 Score=123.49 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=80.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------ch----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------------SG---------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------------~g---------- 457 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|.|.+.+.++.. .+
T Consensus 21 ~~L~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 21 RALYDVNVSIPSGS--YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred cceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 48999999999999 999999999999999999999999999988876654310 00
Q ss_pred ----HHHHH------------------HHHHHHcCCc-ee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 458 ----AVEQL------------------RTHARRLQVP-IF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 458 ----a~eqL------------------~~~~~~l~v~-~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+.+ ..+.+.+++. .. . ........+..+.+|++|+..+|+++|+|+|+...+.
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 00000 1112233442 11 1 1123344555689999999999999999999977766
Q ss_pred HHHH
Q 008816 513 IEYY 516 (552)
Q Consensus 513 ~~lm 516 (552)
....
T Consensus 179 ~~~~ 182 (290)
T PRK13634 179 KGRK 182 (290)
T ss_pred HHHH
Confidence 4433
No 136
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.26 E-value=5.9e-11 Score=112.42 Aligned_cols=112 Identities=16% Similarity=0.072 Sum_probs=79.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee--------ecCCcchHHHHHHHHHHHcCCc
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA--------CDTFRSGAVEQLRTHARRLQVP 472 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~--------~D~~r~ga~eqL~~~~~~l~v~ 472 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+ .+.+-. .. +..+.+...
T Consensus 15 ~~l~~i~l~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~----~~-tv~~nl~~~ 87 (166)
T cd03223 15 VLLKDLSFEIKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP----LG-TLREQLIYP 87 (166)
T ss_pred eeeecCeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc----cc-cHHHHhhcc
Confidence 47899999999999 9999999999999999999999999888877643 111100 00 111111110
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 473 ~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
........+..+.++++|+..+|+++|+|||....+. .....+.++.
T Consensus 88 ---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~-~~~~~l~~~l 134 (166)
T cd03223 88 ---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE-ESEDRLYQLL 134 (166)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH-HHHHHHHHHH
Confidence 1234556677789999999999999999999976554 3344444443
No 137
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=4.2e-11 Score=125.57 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=82.5
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--------------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga--------------------- 458 (552)
..++++|+|.+.+|+ +++|+|+||+||||+++.|++++.+..|+|.+.+.|+.+...
T Consensus 28 ~~~l~~vsl~i~~Ge--~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 28 VKALDGVSFTLERGK--TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSL 105 (327)
T ss_pred eeEEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhc
Confidence 468999999999999 999999999999999999999999999999888776432110
Q ss_pred ------HHHH-------------------HHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 459 ------VEQL-------------------RTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 459 ------~eqL-------------------~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
.+++ ..+.+.+++. .+. ...........|.+|++|+..+|+++|+|||+.+.
T Consensus 106 ~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~L 185 (327)
T PRK11308 106 NPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL 185 (327)
T ss_pred CCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccC
Confidence 1111 1112223442 111 11234445566899999999999999999999877
Q ss_pred ChHHH
Q 008816 511 VIIEY 515 (552)
Q Consensus 511 ~~~~l 515 (552)
+....
T Consensus 186 D~~~~ 190 (327)
T PRK11308 186 DVSVQ 190 (327)
T ss_pred CHHHH
Confidence 65443
No 138
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.26 E-value=6.3e-11 Score=115.37 Aligned_cols=112 Identities=17% Similarity=0.101 Sum_probs=79.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHH--HhhCCceEEEeeecCCcchHHHHHHHHHHH-------c-C
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTFRSGAVEQLRTHARR-------L-Q 470 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~--l~~~ggkVll~~~D~~r~ga~eqL~~~~~~-------l-~ 470 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++. +.+..|+|.+.+.++.+.......+..... + +
T Consensus 14 ~~l~~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 14 EILKGVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred EeeeccceEECCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 48899999999999 9999999999999999999998 467899999988776443221100000000 0 0
Q ss_pred Ccee---ec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 471 VPIF---EK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 471 v~~~---~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+. .. .......+..+.+|++|+..+|+++|+|+|+...+...
T Consensus 92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 139 (200)
T cd03217 92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139 (200)
T ss_pred ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 0000 01 11345566668899999999999999999997666543
No 139
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=5.1e-11 Score=118.94 Aligned_cols=112 Identities=16% Similarity=0.168 Sum_probs=77.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++....
T Consensus 17 ~~l~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 94 (241)
T PRK10895 17 RVVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLS 94 (241)
T ss_pred EEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCc
Confidence 48899999999999 99999999999999999999999999999988765532110
Q ss_pred HHHHHH-------------------HHHHHcCCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 AVEQLR-------------------THARRLQVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 a~eqL~-------------------~~~~~l~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+. .+.+.+++.-. ............+.+|++|+..+|+++|+|+|+...+...
T Consensus 95 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (241)
T PRK10895 95 VYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172 (241)
T ss_pred HHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 001110 01111122110 0011223334447899999999999999999997665543
No 140
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.26 E-value=5.6e-11 Score=119.81 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=79.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh----CCceEEEeeecC--------------------Ccc
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDT--------------------FRS 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~----~ggkVll~~~D~--------------------~r~ 456 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++ |..
T Consensus 17 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 17 PLVHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred ceecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 47899999999999 9999999999999999999999988 778877654332 100
Q ss_pred --hH----------------HHHHHHHHHHcCCce----ee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 457 --GA----------------VEQLRTHARRLQVPI----FE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 457 --ga----------------~eqL~~~~~~l~v~~----~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.. .+++..+.+.+++.- .. ........+..+.+|++|+..+|+++|+|+|+...+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 174 (254)
T PRK10418 95 LHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVV 174 (254)
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 00 011112223334431 11 12234556666899999999999999999999877664
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 175 ~ 175 (254)
T PRK10418 175 A 175 (254)
T ss_pred H
Confidence 4
No 141
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=3.4e-11 Score=128.59 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=80.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~e 460 (552)
.+|++++|.+..|+ +++|+|||||||||++++||++..+..|+|.+.+.++.. ....+
T Consensus 33 ~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e 110 (377)
T PRK11607 33 HAVDDVSLTIYKGE--IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQ 110 (377)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHH
Confidence 47889999999999 999999999999999999999999999999887655311 00111
Q ss_pred ------------------HHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 461 ------------------QLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 461 ------------------qL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+..+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|+|....|..
T Consensus 111 Ni~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~ 183 (377)
T PRK11607 111 NIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 1112223334432111 1234455666899999999999999999999766543
No 142
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.26 E-value=4.9e-11 Score=121.05 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=78.9
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------- 457 (552)
..++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.+..
T Consensus 24 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 24 APVLTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred eEEeeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 358899999999999 99999999999999999999999999998887665432110
Q ss_pred -----HHHHH-------------------HHHHHHcCCc-ee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 458 -----AVEQL-------------------RTHARRLQVP-IF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 458 -----a~eqL-------------------~~~~~~l~v~-~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
..+.+ ..+.+.+++. .+ . ........+..+.+|++|+..+|+++|+|+|....
T Consensus 102 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~L 181 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181 (265)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 00000 0111222332 11 1 11223344555789999999999999999999777
Q ss_pred ChHH
Q 008816 511 VIIE 514 (552)
Q Consensus 511 ~~~~ 514 (552)
+...
T Consensus 182 D~~~ 185 (265)
T TIGR02769 182 DMVL 185 (265)
T ss_pred CHHH
Confidence 6644
No 143
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.26 E-value=3.3e-11 Score=128.11 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=82.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCC--ceEEEeeecCCcc--------------------hH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK--VSVMMAACDTFRS--------------------GA 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~g--gkVll~~~D~~r~--------------------ga 458 (552)
.+|++++|.+..|+ +++|+|||||||||++++||+++.+.. |+|.+.+.++... ..
T Consensus 19 ~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 19 TVLDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred EEEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH
Confidence 47899999999999 999999999999999999999999999 9998876653210 01
Q ss_pred HHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHH
Q 008816 459 VEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLF 518 (552)
Q Consensus 459 ~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~e 518 (552)
.+.+ ..+.+.+++.-+. ........+..|.+|++|+..+|+++|+|||....+. ....+
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~-~~r~~ 175 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDA-NIRAN 175 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH-HHHHH
Confidence 1111 1122333433211 1122344555689999999999999999999976655 33333
Q ss_pred HHH
Q 008816 519 LLH 521 (552)
Q Consensus 519 L~k 521 (552)
|..
T Consensus 176 l~~ 178 (362)
T TIGR03258 176 MRE 178 (362)
T ss_pred HHH
Confidence 333
No 144
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=4.7e-11 Score=121.60 Aligned_cols=112 Identities=17% Similarity=0.067 Sum_probs=77.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-----------ch------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-----------SG------------ 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-----------~g------------ 457 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++.. .+
T Consensus 15 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (271)
T PRK13638 15 PVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY 92 (271)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence 47899999999999 999999999999999999999999999999887665310 00
Q ss_pred --HHHHHHH------------------HHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 --AVEQLRT------------------HARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 --a~eqL~~------------------~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+.. +.+.+++.-+. ...........+.+|++|+..+|+++|+|||+...+...
T Consensus 93 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~ 171 (271)
T PRK13638 93 TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171 (271)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 0001100 01111221100 011223344457899999999999999999997766543
No 145
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=4e-11 Score=119.08 Aligned_cols=112 Identities=22% Similarity=0.203 Sum_probs=78.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch---------------------HH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------AV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------a~ 459 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.+.. ..
T Consensus 15 ~~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 15 PVLKDVSFTIPAGK--KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 37899999999999 99999999999999999999999999999988665432100 00
Q ss_pred HHH------------HHHHHHcCCc-------------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQL------------RTHARRLQVP-------------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL------------~~~~~~l~v~-------------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+ .......++. +..........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 101 0000111110 000112344556668999999999999999999997666544
No 146
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=5.7e-11 Score=121.71 Aligned_cols=112 Identities=20% Similarity=0.154 Sum_probs=78.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA---------------------- 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga---------------------- 458 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++.+.+..|+|.+.+.++.....
T Consensus 21 ~~l~~vsl~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 21 YALKDVSFSVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 48899999999999 999999999999999999999999999999987766422110
Q ss_pred -HHHHH------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 -VEQLR------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 -~eqL~------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+. .+...+++.-+. ...........+.+|++|+..+|+++|+|+|+...+...
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~ 175 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRG 175 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 11110 011111221110 011223344447899999999999999999997776543
No 147
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.26 E-value=2.6e-11 Score=134.49 Aligned_cols=134 Identities=19% Similarity=0.134 Sum_probs=93.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.+|+|++|.+++|+ .++||||+||||||+++.|++++.+..|+|.+.+.|....
T Consensus 349 ~vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~e 426 (529)
T TIGR02868 349 PVLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRD 426 (529)
T ss_pred ceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHH
Confidence 48999999999999 9999999999999999999999999999998877554211
Q ss_pred --------hHHHHHHHHHHHcCC-------------ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 457 --------GAVEQLRTHARRLQV-------------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 457 --------ga~eqL~~~~~~l~v-------------~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
...+++...++..++ .+-+.+......+..|.+|+||+..+++++|+|||+...|.+..
T Consensus 427 NI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te 506 (529)
T TIGR02868 427 NLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTE 506 (529)
T ss_pred HHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 011223322332222 11123344566777899999999999999999999987766554
Q ss_pred HHHHHHHhhhhccccEEEEEEe
Q 008816 516 YLFLLHIYLHTVCEHFVNIITF 537 (552)
Q Consensus 516 m~eL~kl~~~~~~~~~~~ii~~ 537 (552)
-...+.+.. ......+.++++
T Consensus 507 ~~I~~~l~~-~~~~~TvIiItH 527 (529)
T TIGR02868 507 SELLEDLLA-ALSGKTVVVITH 527 (529)
T ss_pred HHHHHHHHH-hcCCCEEEEEec
Confidence 444444332 223344455544
No 148
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=6e-11 Score=123.27 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=44.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++++.+..|.|.+.+
T Consensus 21 ~~l~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g 68 (305)
T PRK13651 21 KALDNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIF 68 (305)
T ss_pred cceeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEec
Confidence 48999999999999 9999999999999999999999999989887753
No 149
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=4.6e-11 Score=119.09 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=79.3
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAVEQ 461 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~eq 461 (552)
++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++.. ....+.
T Consensus 14 ~l~~is~~i~~Ge--~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGD--YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 6899999999999 999999999999999999999999999988876544321 011111
Q ss_pred H------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 462 L------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 462 L------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+ ..+.+.+++.-.. ...........+.+|++|+..+++++|+|+|....+...
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~ 164 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRT 164 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHH
Confidence 1 1222233332111 112345566668999999999999999999997665543
No 150
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=7.6e-11 Score=117.24 Aligned_cols=133 Identities=20% Similarity=0.156 Sum_probs=87.9
Q ss_pred HHHHHHHHhCC---CCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC--------C
Q 008816 386 MEEALVRILTP---RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------F 454 (552)
Q Consensus 386 l~~~L~~il~~---~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~--------~ 454 (552)
+...+...+.+ .....+|+||+|.+.+|+ .++|||+||+||||+++.||+.+.|+.|+|.+.+.=. |
T Consensus 23 ~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf 100 (249)
T COG1134 23 LKKRLKGLAKGGRKVAEFWALKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGF 100 (249)
T ss_pred HHHHHHHHhcCCCCcceEEEecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCC
Confidence 34445555533 345789999999999999 9999999999999999999999999999987643211 1
Q ss_pred c--chHHHHH------------------------HHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 455 R--SGAVEQL------------------------RTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 455 r--~ga~eqL------------------------~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
. ....+.+ ..+.+.++.|+. .| ...-.+|.|++.|...+||++|+|+.-.
T Consensus 101 ~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~Pvk--tY--SSGM~aRLaFsia~~~~pdILllDEvla 176 (249)
T COG1134 101 DPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVK--TY--SSGMYARLAFSVATHVEPDILLLDEVLA 176 (249)
T ss_pred CcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchh--hc--cHHHHHHHHHhhhhhcCCCEEEEehhhh
Confidence 0 0011111 122223344432 12 2234557777778889999999999876
Q ss_pred CCChHHHHHHHHHHhh
Q 008816 509 MQVIIEYYLFLLHIYL 524 (552)
Q Consensus 509 ~~~~~~lm~eL~kl~~ 524 (552)
..+..-.-..+.++..
T Consensus 177 vGD~~F~~K~~~rl~e 192 (249)
T COG1134 177 VGDAAFQEKCLERLNE 192 (249)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6665444444444443
No 151
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=4.3e-11 Score=121.48 Aligned_cols=113 Identities=16% Similarity=0.074 Sum_probs=78.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc----------------------hH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------------------GA 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------------------ga 458 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|+|.+.+.++.+. ..
T Consensus 25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (265)
T PRK10575 25 TLLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTV 102 (265)
T ss_pred EEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccH
Confidence 58999999999999 9999999999999999999999999999988876553110 00
Q ss_pred HHHH----------------------HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 VEQL----------------------RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 ~eqL----------------------~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+ ..+.+.+++.-. . ...........+.+|++|+..+|+++|+|+|+...+...
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1111 111122222110 0 011233344457899999999999999999997766544
Q ss_pred H
Q 008816 515 Y 515 (552)
Q Consensus 515 l 515 (552)
.
T Consensus 183 ~ 183 (265)
T PRK10575 183 Q 183 (265)
T ss_pred H
Confidence 3
No 152
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.26 E-value=4.7e-11 Score=121.52 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=76.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++.+.
T Consensus 21 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 98 (269)
T PRK11831 21 CIFDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTD 98 (269)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCC
Confidence 47899999999999 9999999999999999999999999899988876543210
Q ss_pred -hHHHHHHH-------------------HHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 457 -GAVEQLRT-------------------HARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 457 -ga~eqL~~-------------------~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
...+.+.. ....+++.-.. ........+..+.+|++|+..+|+++|+|+|+...+...
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 178 (269)
T PRK11831 99 MNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178 (269)
T ss_pred CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 00111110 01111221100 001223344457899999999999999999997665543
No 153
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=2.9e-11 Score=124.27 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=79.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------ch----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------------SG---------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------------~g---------- 457 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.. .+
T Consensus 21 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 21 QAIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred CceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence 48999999999999 999999999999999999999999999999887655321 00
Q ss_pred ----HHHHH------------------HHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 458 ----AVEQL------------------RTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 458 ----a~eqL------------------~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+.+ ..+.+.+++. ... ........+..+.+|++|+..+|+++|+|+|+...+.
T Consensus 99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 00000 0111122332 111 1223344555589999999999999999999977665
Q ss_pred HH
Q 008816 513 IE 514 (552)
Q Consensus 513 ~~ 514 (552)
..
T Consensus 179 ~~ 180 (286)
T PRK13646 179 QS 180 (286)
T ss_pred HH
Confidence 44
No 154
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4.1e-11 Score=120.51 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=46.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++
T Consensus 19 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 69 (255)
T PRK11300 19 LAVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69 (255)
T ss_pred EEEEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEEC
Confidence 58899999999999 9999999999999999999999999999998877654
No 155
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=5.6e-11 Score=116.20 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=75.7
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc--------------------hHHHH---
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--------------------GAVEQ--- 461 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~--------------------ga~eq--- 461 (552)
+++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+. ...+.
T Consensus 16 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGE--ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 7899999999 9999999999999999999999999999888766543110 01111
Q ss_pred ---------------HHHHHHHcCCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHH
Q 008816 462 ---------------LRTHARRLQVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYY 516 (552)
Q Consensus 462 ---------------L~~~~~~l~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm 516 (552)
+....+.+++.-. ............+.+|++|+..+|+++|+|||+...+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 1111222233211 011233445555889999999999999999999776654433
No 156
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.25 E-value=6.2e-11 Score=118.25 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=77.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++...
T Consensus 15 ~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (240)
T PRK09493 15 QVLHNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL 92 (240)
T ss_pred EEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCC
Confidence 47899999999999 9999999999999999999999999999998876554210
Q ss_pred hHHHHHH-------------------HHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 457 GAVEQLR-------------------THARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 457 ga~eqL~-------------------~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
...+.+. .+.+.+++.-. . ........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 171 (240)
T PRK09493 93 TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171 (240)
T ss_pred cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0001110 11112222110 0 011233344457899999999999999999997765543
No 157
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=6.8e-11 Score=121.59 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=79.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------c-----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------------S----------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------------~----------- 456 (552)
.++++++|.+.+|+ +++|+|+||+|||||++.|++.+.+..|+|.+.+.++.. .
T Consensus 21 ~~l~~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 98 (287)
T PRK13641 21 KGLDNISFELEEGS--FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL 98 (287)
T ss_pred cceeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence 48999999999999 999999999999999999999999999988886654311 0
Q ss_pred ---hHHHHH------------------HHHHHHcCCc--eeec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 457 ---GAVEQL------------------RTHARRLQVP--IFEK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 457 ---ga~eqL------------------~~~~~~l~v~--~~~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
...+.+ ..+.+.+++. +... ..........+.+|++|+..+|+++|+|||+...+.
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~ 178 (287)
T PRK13641 99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178 (287)
T ss_pred ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 011111 1111222332 1111 123344555688999999999999999999977665
Q ss_pred HH
Q 008816 513 IE 514 (552)
Q Consensus 513 ~~ 514 (552)
..
T Consensus 179 ~~ 180 (287)
T PRK13641 179 EG 180 (287)
T ss_pred HH
Confidence 43
No 158
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4.6e-11 Score=125.22 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=83.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh----CCceEEEeeecCCcchH-----------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTFRSGA----------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~----~ggkVll~~~D~~r~ga----------------- 458 (552)
..+|++|+|.+.+|+ +++|+|+||||||||++.|++++.+ ..|+|.+.+.|+.....
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~ 97 (326)
T PRK11022 20 FRAVDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQD 97 (326)
T ss_pred EEEEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 458999999999999 9999999999999999999998863 67888887766421100
Q ss_pred -----------HHHH-------------------HHHHHHcCCce----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 008816 459 -----------VEQL-------------------RTHARRLQVPI----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLV 503 (552)
Q Consensus 459 -----------~eqL-------------------~~~~~~l~v~~----~-~~~~~~dp~~iar~aIa~a~~~~~DvVII 503 (552)
.+++ ..+.+.++++- . ............|.+|++|+..+|+++|+
T Consensus 98 ~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llil 177 (326)
T PRK11022 98 PMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIA 177 (326)
T ss_pred chhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 0111 11122334421 0 01122344555589999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHh
Q 008816 504 DTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 504 DtpGr~~~~~~lm~eL~kl~ 523 (552)
|||+...|.......+..|.
T Consensus 178 DEPts~LD~~~~~~il~lL~ 197 (326)
T PRK11022 178 DEPTTALDVTIQAQIIELLL 197 (326)
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99998877654444433333
No 159
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.25 E-value=5.7e-11 Score=117.13 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=80.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+..
T Consensus 19 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 47899999999999 99999999999999999999999999898887665432100
Q ss_pred ----HHHHHH--------------------HHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 458 ----AVEQLR--------------------THARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 458 ----a~eqL~--------------------~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
..+.+. .+...+++. +.. ........+..+.+|++|+..+|+++|+|||+...
T Consensus 97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~L 176 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSAL 176 (228)
T ss_pred CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence 000000 011222331 111 11123334555889999999999999999999766
Q ss_pred ChHHHHHHHHHHh
Q 008816 511 VIIEYYLFLLHIY 523 (552)
Q Consensus 511 ~~~~lm~eL~kl~ 523 (552)
+.. ..+.+.+++
T Consensus 177 D~~-~~~~l~~~l 188 (228)
T cd03257 177 DVS-VQAQILDLL 188 (228)
T ss_pred CHH-HHHHHHHHH
Confidence 554 344444433
No 160
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.25 E-value=7.4e-11 Score=116.39 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=79.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe--ee--cCCc-------------ch-----
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--AC--DTFR-------------SG----- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~--~~--D~~r-------------~g----- 457 (552)
..++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+. +. +..+ .+
T Consensus 21 ~~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 358999999999999 999999999999999999999999988988875 21 2100 00
Q ss_pred --------HHHH------------------HHHHHHHcCCce-e-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 458 --------AVEQ------------------LRTHARRLQVPI-F-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 458 --------a~eq------------------L~~~~~~l~v~~-~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
..+. ...+.+.+++.- + . ........+..+.+|++|+..+|+++|+|+|+.
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 178 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTA 178 (224)
T ss_pred cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 0001 111222234321 1 1 122345556668899999999999999999997
Q ss_pred CCChHHH
Q 008816 509 MQVIIEY 515 (552)
Q Consensus 509 ~~~~~~l 515 (552)
..+....
T Consensus 179 ~LD~~~~ 185 (224)
T TIGR02324 179 SLDAANR 185 (224)
T ss_pred cCCHHHH
Confidence 6655443
No 161
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=7e-11 Score=120.41 Aligned_cols=112 Identities=15% Similarity=0.201 Sum_probs=77.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------h--------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------G-------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------g-------------- 457 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++++.+..|.|.+.+.++... +
T Consensus 23 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 23 NALKNVSFEINEGE--YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 47899999999999 9999999999999999999999999999888766553210 0
Q ss_pred HHHHHH------------------HHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 AVEQLR------------------THARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 a~eqL~------------------~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+. .+.+.+++.-+ . ........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~ 177 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKG 177 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 001110 01112222110 0 111233445557899999999999999999997766543
No 162
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.25 E-value=8.6e-11 Score=117.09 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=78.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH--hhCCceEEEeeecCCc----------ch-----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTFR----------SG----------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l--~~~ggkVll~~~D~~r----------~g----------- 457 (552)
.+|++++|.+.+|+ +++|+||||+||||+++.|++.+ .+..|.|.+.+.++.+ .+
T Consensus 14 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 14 EILKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred EEEeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 47899999999999 99999999999999999999984 5778888876654311 00
Q ss_pred --HHH-------------------------HHHHHHHHcCCc--eeecCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 458 --AVE-------------------------QLRTHARRLQVP--IFEKGY--EKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 458 --a~e-------------------------qL~~~~~~l~v~--~~~~~~--~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
..+ .+....+.++++ ...... .....+..+.+|++|+..+|+++|+|+|
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 000 011111223443 111211 2556667789999999999999999999
Q ss_pred CCCCChHH
Q 008816 507 GRMQVIIE 514 (552)
Q Consensus 507 Gr~~~~~~ 514 (552)
+...+...
T Consensus 172 t~~LD~~~ 179 (243)
T TIGR01978 172 DSGLDIDA 179 (243)
T ss_pred cccCCHHH
Confidence 97665543
No 163
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.25 E-value=5.5e-11 Score=116.93 Aligned_cols=119 Identities=17% Similarity=0.144 Sum_probs=80.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch---------------------HH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------AV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------a~ 459 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|+|.+.+.++.+.. ..
T Consensus 18 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 95 (221)
T cd03244 18 PVLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIR 95 (221)
T ss_pred ccccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHH
Confidence 47899999999999 99999999999999999999999999999988665432100 00
Q ss_pred H-----------HHHHHHHHcCCce-------------eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 460 E-----------QLRTHARRLQVPI-------------FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 460 e-----------qL~~~~~~l~v~~-------------~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
+ .+....+.+++.- ..........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 96 enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~- 174 (221)
T cd03244 96 SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET- 174 (221)
T ss_pred HHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH-
Confidence 0 0111111112110 01122344556668899999999999999999997665543
Q ss_pred HHHHHHH
Q 008816 516 YLFLLHI 522 (552)
Q Consensus 516 m~eL~kl 522 (552)
...+.++
T Consensus 175 ~~~l~~~ 181 (221)
T cd03244 175 DALIQKT 181 (221)
T ss_pred HHHHHHH
Confidence 3333333
No 164
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=8.4e-11 Score=122.98 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=80.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.+|++++|.+.+|+ +++|+|+||||||||++.|++++.+..|+|.+.+.++...
T Consensus 40 ~~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 40 VALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 48999999999999 9999999999999999999999999999998865432110
Q ss_pred ---------------hHHH------------------HHHHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCE
Q 008816 457 ---------------GAVE------------------QLRTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDV 500 (552)
Q Consensus 457 ---------------ga~e------------------qL~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~Dv 500 (552)
...+ +...+...++++ +.. ........+..|.+|++|+..+|++
T Consensus 118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i 197 (320)
T PRK13631 118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197 (320)
T ss_pred EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 0000 001112223442 111 1223455566689999999999999
Q ss_pred EEEeCCCCCCChHH
Q 008816 501 VLVDTAGRMQVIIE 514 (552)
Q Consensus 501 VIIDtpGr~~~~~~ 514 (552)
+|+|+|+...+...
T Consensus 198 LLLDEPtsgLD~~~ 211 (320)
T PRK13631 198 LIFDEPTAGLDPKG 211 (320)
T ss_pred EEEECCccCCCHHH
Confidence 99999998776544
No 165
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.25 E-value=6.2e-11 Score=119.93 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=76.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc----------------------hH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------------------GA 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------------------ga 458 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++.+. ..
T Consensus 16 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (258)
T PRK13548 16 TLLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTV 93 (258)
T ss_pred eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCH
Confidence 47899999999999 9999999999999999999999999999988866543210 00
Q ss_pred HHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHh------CCCCEEEEeCCCCCCCh
Q 008816 459 VEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATR------NGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 459 ~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~------~~~DvVIIDtpGr~~~~ 512 (552)
.+.+ ..+.+.+++.-.. ........+..+.+|++|+. .+|+++|+|+|+...+.
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 1111 1111122222100 11123334455788999988 48999999999977665
Q ss_pred HH
Q 008816 513 IE 514 (552)
Q Consensus 513 ~~ 514 (552)
..
T Consensus 174 ~~ 175 (258)
T PRK13548 174 AH 175 (258)
T ss_pred HH
Confidence 44
No 166
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.25 E-value=5.4e-11 Score=119.62 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=78.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+.+|.|.+.+.++...
T Consensus 14 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 14 TVLDGLNFSVAAGE--KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred eEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 58899999999999 9999999999999999999999999999988866543210
Q ss_pred -----------hHHHHH-------------------HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Q 008816 457 -----------GAVEQL-------------------RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVD 504 (552)
Q Consensus 457 -----------ga~eqL-------------------~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIID 504 (552)
...+.+ ..+.+.+++.-. . ........+..+.+|++|+..+|+++|+|
T Consensus 92 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (252)
T TIGR03005 92 VFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFD 171 (252)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 000111 111122232211 0 11223444555889999999999999999
Q ss_pred CCCCCCChHH
Q 008816 505 TAGRMQVIIE 514 (552)
Q Consensus 505 tpGr~~~~~~ 514 (552)
+|....+...
T Consensus 172 EP~~~LD~~~ 181 (252)
T TIGR03005 172 EVTSALDPEL 181 (252)
T ss_pred CCcccCCHHH
Confidence 9997665543
No 167
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=6.9e-11 Score=117.50 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=79.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~e 460 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.+... ....+
T Consensus 14 ~il~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 91 (232)
T cd03300 14 VALDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFE 91 (232)
T ss_pred eeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHH
Confidence 48899999999999 999999999999999999999999999998886554321 01111
Q ss_pred HH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 461 QL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 461 qL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~ 165 (232)
T cd03300 92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKL 165 (232)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 11 1122223432111 112234455568899999999999999999997665543
No 168
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.24 E-value=9.2e-11 Score=117.58 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=79.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-----CceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-----ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+. .|+|.+.+.++..
T Consensus 15 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 15 EALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred eeecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 47899999999999 99999999999999999999999887 8999886654321
Q ss_pred ---chHHHHHH-------------------HHHHHcCCc-----eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLR-------------------THARRLQVP-----IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~-------------------~~~~~l~v~-----~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+. .+.+.+++. ... ........+..+.+|++|+..+|+++|+|+|+
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 172 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00111111 111222332 111 11234455666899999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 173 ~~LD~~~ 179 (247)
T TIGR00972 173 SALDPIA 179 (247)
T ss_pred ccCCHHH
Confidence 8776543
No 169
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.24 E-value=6.1e-11 Score=116.53 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=78.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------------------chHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------------------SGAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------------------~ga~ 459 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.++.. ....
T Consensus 18 ~~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 95 (220)
T cd03245 18 PALDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLR 95 (220)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHH
Confidence 47899999999999 999999999999999999999999888988876544210 0011
Q ss_pred HHH------------HHHHHHcCCce-ee------------cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQL------------RTHARRLQVPI-FE------------KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL------------~~~~~~l~v~~-~~------------~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+ ..+...+++.- .. ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 96 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~ 175 (220)
T cd03245 96 DNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175 (220)
T ss_pred HHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 111 11111222210 00 012344556668899999999999999999997665544
Q ss_pred H
Q 008816 515 Y 515 (552)
Q Consensus 515 l 515 (552)
.
T Consensus 176 ~ 176 (220)
T cd03245 176 E 176 (220)
T ss_pred H
Confidence 3
No 170
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.24 E-value=6e-11 Score=118.40 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=82.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~e 460 (552)
.++++++|.+.+|+ +++|+|+||+||||++..|++++.+..|+|.+.+.++.. ....+
T Consensus 14 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 14 QALDDVNLEVPTGS--LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHH
Confidence 48899999999999 999999999999999999999999988988876544321 01111
Q ss_pred HHH------------------HHHHHcCCcee-ec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHH
Q 008816 461 QLR------------------THARRLQVPIF-EK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLL 520 (552)
Q Consensus 461 qL~------------------~~~~~l~v~~~-~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~ 520 (552)
.+. .+.+.+++.-+ .. ..........+.+|++++..+|+++|+|+|....+.......+.
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~ 171 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS 171 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 111 11122232210 00 11234455558899999999999999999997766654443333
Q ss_pred HHh
Q 008816 521 HIY 523 (552)
Q Consensus 521 kl~ 523 (552)
.|.
T Consensus 172 ~l~ 174 (237)
T TIGR00968 172 WLR 174 (237)
T ss_pred HHH
Confidence 333
No 171
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.24 E-value=1.8e-11 Score=123.58 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=90.0
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch---HHHHHHHHHHHcCCce--
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---AVEQLRTHARRLQVPI-- 473 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---a~eqL~~~~~~l~v~~-- 473 (552)
.+.++++|+|.+.+|+ +++|||.+||||||+.+.|.+++.+.+|+|.+.+.|..... ..+.+..+.+.+|.+-
T Consensus 25 ~v~avd~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~ 102 (268)
T COG4608 25 YVKAVDGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEF 102 (268)
T ss_pred ceEEecceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHH
Confidence 3578899999999999 99999999999999999999999999999999998865433 2334444555555431
Q ss_pred -eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHH
Q 008816 474 -FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLF 518 (552)
Q Consensus 474 -~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~e 518 (552)
........-.+..|.+|++|+.-+|++++.|+|..+.+..-..+.
T Consensus 103 ~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqI 148 (268)
T COG4608 103 LYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI 148 (268)
T ss_pred hhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHH
Confidence 111122334556689999999999999999999988776433333
No 172
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=6.4e-11 Score=117.50 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=77.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+. ...
T Consensus 16 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (234)
T cd03251 16 PVLRDISLDIPAGE--TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVA 93 (234)
T ss_pred cceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHH
Confidence 47899999999999 9999999999999999999999999999998866443110 001
Q ss_pred HHHH------------HH---------HHHc--CCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQLR------------TH---------ARRL--QVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL~------------~~---------~~~l--~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+. .. .+.+ ++.-. .........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 1110 00 0000 11100 0112344456668899999999999999999997665543
No 173
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.24 E-value=6.5e-11 Score=118.67 Aligned_cols=112 Identities=15% Similarity=0.109 Sum_probs=77.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++..
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 17 TVLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 48899999999999 999999999999999999999999888988776543210
Q ss_pred -----chHHHHHH-------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 456 -----SGAVEQLR-------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 456 -----~ga~eqL~-------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
....+.+. .+.+.+++.-.. ........+..+.+|++|+..+|+++|+|+|+..
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~ 174 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 00111111 111112322110 1112333455578999999999999999999977
Q ss_pred CChHH
Q 008816 510 QVIIE 514 (552)
Q Consensus 510 ~~~~~ 514 (552)
.+...
T Consensus 175 LD~~~ 179 (250)
T PRK11264 175 LDPEL 179 (250)
T ss_pred CCHHH
Confidence 65543
No 174
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=5.5e-11 Score=117.58 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=76.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------h------------HH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------G------------AV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------g------------a~ 459 (552)
.++++++|.+..|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.++... + ..
T Consensus 17 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (229)
T cd03254 17 PVLKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM 94 (229)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHH
Confidence 47899999999999 9999999999999999999999999999998866443110 0 00
Q ss_pred HHH------------HHHHHHcCCcee-------------ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 460 EQL------------RTHARRLQVPIF-------------EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 460 eqL------------~~~~~~l~v~~~-------------~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+.+ ....+.+++.-+ ............+.+|++|+..+|+++|+|+|....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~ 173 (229)
T cd03254 95 ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173 (229)
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 000 000011111000 001234455666889999999999999999999766543
No 175
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=9.1e-11 Score=120.78 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=79.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------ch----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------------SG---------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------------~g---------- 457 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++.+ .+
T Consensus 20 ~~l~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 20 RALFDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 48999999999999 999999999999999999999999999998887665310 00
Q ss_pred ----HHHHH------------------HHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 458 ----AVEQL------------------RTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 458 ----a~eqL------------------~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+.+ ..+.+.+++. +.. ........+..+.+|++++..+|+++|+|+|+...+.
T Consensus 98 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~ 177 (288)
T PRK13643 98 FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177 (288)
T ss_pred ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCH
Confidence 00111 0111222432 111 1123444556689999999999999999999977765
Q ss_pred HH
Q 008816 513 IE 514 (552)
Q Consensus 513 ~~ 514 (552)
..
T Consensus 178 ~~ 179 (288)
T PRK13643 178 KA 179 (288)
T ss_pred HH
Confidence 43
No 176
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=6.3e-11 Score=127.41 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=79.6
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------- 457 (552)
..+|++++|.+.+|+ +++|+||||||||||+++|++++.+..|+|.+.+.|+....
T Consensus 41 ~~~L~~isl~i~~Ge--i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 347899999999999 99999999999999999999999999999988776542110
Q ss_pred ----HHHHH------------------HHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 458 ----AVEQL------------------RTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 458 ----a~eqL------------------~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
..+.+ ..+.+.+++.-+.. .......+..+.+|++|+..+|+++|+|||....+..
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 01111 11122223321111 1123444555899999999999999999999766554
No 177
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.24 E-value=5.5e-11 Score=118.27 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=77.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch---------------------HH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------AV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------a~ 459 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.... ..
T Consensus 16 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 16 VILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred cceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 47899999999999 99999999999999999999999999999988765431100 00
Q ss_pred HHH------------HHHHHHcCCc---------e----eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQL------------RTHARRLQVP---------I----FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL------------~~~~~~l~v~---------~----~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+ ....+..++. + -.........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 100 0000101100 0 00112334455568899999999999999999997766544
Q ss_pred H
Q 008816 515 Y 515 (552)
Q Consensus 515 l 515 (552)
.
T Consensus 174 ~ 174 (237)
T cd03252 174 E 174 (237)
T ss_pred H
Confidence 3
No 178
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=6.2e-11 Score=121.63 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=79.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-----------ch------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-----------SG------------ 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-----------~g------------ 457 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|+|.+.+.+... .+
T Consensus 20 ~~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 20 HALKGININIKKGE--VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 48999999999999 999999999999999999999999999999887765420 00
Q ss_pred --HHHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 458 --AVEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 458 --a~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+ ..+.+.+++.-+. ...........+.+|++|+..+|+++|+|+|+...+....
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 00111 0111112221110 1112334444578999999999999999999987766543
No 179
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.24 E-value=8.1e-11 Score=118.79 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=80.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++..
T Consensus 19 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (257)
T PRK10619 19 EVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96 (257)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence 48899999999999 999999999999999999999999999988877654310
Q ss_pred ----------chHHHHH-------------------HHHHHHcCCcee--e-cCCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 008816 456 ----------SGAVEQL-------------------RTHARRLQVPIF--E-KGYEKDPAIVAKEAIQEATRNGSDVVLV 503 (552)
Q Consensus 456 ----------~ga~eqL-------------------~~~~~~l~v~~~--~-~~~~~dp~~iar~aIa~a~~~~~DvVII 503 (552)
....+.+ ..+.+.+++.-. . ...........+.+|++|+..+|+++|+
T Consensus 97 v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (257)
T PRK10619 97 VFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLF 176 (257)
T ss_pred EecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0111211 112223344321 1 1123444556688999999999999999
Q ss_pred eCCCCCCChHH
Q 008816 504 DTAGRMQVIIE 514 (552)
Q Consensus 504 DtpGr~~~~~~ 514 (552)
|+|+...+...
T Consensus 177 DEPt~~LD~~~ 187 (257)
T PRK10619 177 DEPTSALDPEL 187 (257)
T ss_pred eCCcccCCHHH
Confidence 99997766543
No 180
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.24 E-value=1e-10 Score=113.31 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=80.3
Q ss_pred ccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------chHHHHHH--
Q 008816 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------SGAVEQLR-- 463 (552)
Q Consensus 404 ~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------~ga~eqL~-- 463 (552)
.+++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.+..+ ....+.+.
T Consensus 17 ~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~ 94 (195)
T PRK13541 17 FDLSITFLPSA--ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFW 94 (195)
T ss_pred EEEEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHH
Confidence 34999999999 999999999999999999999999999999887755311 01111111
Q ss_pred -----------HHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 464 -----------THARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 464 -----------~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
.+.+.+++.-. . ........+..+.++++|+..+|+++|+|+|....+... .+.+.+++
T Consensus 95 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~-~~~l~~~l 166 (195)
T PRK13541 95 SEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN-RDLLNNLI 166 (195)
T ss_pred HHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH-HHHHHHHH
Confidence 11122233211 1 112334455668899999999999999999997665544 45554444
No 181
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.24 E-value=8.2e-11 Score=117.11 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=76.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------H
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA---------------------V 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga---------------------~ 459 (552)
.++++++|.+++|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++..... .
T Consensus 17 ~~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (238)
T cd03249 17 PILKGLSLTIPPGK--TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94 (238)
T ss_pred cceeceEEEecCCC--EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence 47899999999999 999999999999999999999999999999887755321000 0
Q ss_pred HHH------------HHHHHHcCCc-------------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQL------------RTHARRLQVP-------------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL------------~~~~~~l~v~-------------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+ ....+..++. .-............+.+|++|+..+|+++|+|+|....+...
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~ 174 (238)
T cd03249 95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174 (238)
T ss_pred HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 000 0000000110 000011234455567889999999999999999997665543
No 182
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.24 E-value=7.9e-11 Score=116.19 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=77.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC-----------------c-chHHHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------------R-SGAVEQL 462 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~-----------------r-~ga~eqL 462 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.+.. . ....+.+
T Consensus 14 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 14 TAVNNISLTVPKNS--VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENL 91 (223)
T ss_pred EEEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHH
Confidence 47899999999999 99999999999999999999999998888877553321 0 0111222
Q ss_pred H--------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 463 R--------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 463 ~--------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
. .+.+.+++.-.. ........+..+.++++|+..+|+++|+|+|....+...
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 92 KVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 1 122223332110 011234455558899999999999999999997665543
No 183
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.24 E-value=9.4e-11 Score=115.99 Aligned_cols=119 Identities=16% Similarity=0.098 Sum_probs=80.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh---hCCceEEEeeecCC----c---------------ch
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTF----R---------------SG 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~---~~ggkVll~~~D~~----r---------------~g 457 (552)
..++++++|.+.+|+ +++|+||||+||||+++.|++.+. +..|+|.+.+.+.. | ..
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 97 (226)
T cd03234 20 ARILNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLT 97 (226)
T ss_pred cccccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCc
Confidence 458899999999999 999999999999999999999998 78888887665431 0 01
Q ss_pred HHHHHHH----------------------HHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 458 AVEQLRT----------------------HARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 458 a~eqL~~----------------------~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
..+.+.. ..+.+++..+. ........+..+.+|++++..+|+++|+|+|....+..
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~ 177 (226)
T cd03234 98 VRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177 (226)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHH
Confidence 1111111 01111111100 01123344555789999999999999999999777655
Q ss_pred HHHHHHH
Q 008816 514 EYYLFLL 520 (552)
Q Consensus 514 ~lm~eL~ 520 (552)
.....+.
T Consensus 178 ~~~~~~~ 184 (226)
T cd03234 178 TALNLVS 184 (226)
T ss_pred HHHHHHH
Confidence 4433333
No 184
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.24 E-value=5.2e-11 Score=133.70 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=84.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------ 455 (552)
..+|++++|.+++|+ .++|||++|+||||++..|++++ +..|+|.+.+.|...
T Consensus 363 ~~vL~~i~l~i~~G~--~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI 439 (588)
T PRK11174 363 KTLAGPLNFTLPAGQ--RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTL 439 (588)
T ss_pred CeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCH
Confidence 458999999999999 99999999999999999999999 888999888765421
Q ss_pred --------c-hHHHHHHHHHHHc-------------CCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 456 --------S-GAVEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 456 --------~-ga~eqL~~~~~~l-------------~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+ ...+++...++.. +-.+-+.+......+..|.+|+||+..+++++|+|||+...|.+
T Consensus 440 ~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 440 RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 1 1112222222221 11222334456677788999999999999999999999877665
Q ss_pred HHH
Q 008816 514 EYY 516 (552)
Q Consensus 514 ~lm 516 (552)
..-
T Consensus 520 te~ 522 (588)
T PRK11174 520 SEQ 522 (588)
T ss_pred HHH
Confidence 433
No 185
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1e-10 Score=119.98 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=77.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCC---ceEEEeeecCCcch--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK---VSVMMAACDTFRSG-------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~g---gkVll~~~D~~r~g-------------------- 457 (552)
.++++++|.+.+|+ +++|+|+||+||||++..|++++.+.. |.|.+.+.+.....
T Consensus 21 ~~l~~v~l~i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~ 98 (282)
T PRK13640 21 PALNDISFSIPRGS--WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFV 98 (282)
T ss_pred cceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhc
Confidence 48899999999999 999999999999999999999998765 78877665532110
Q ss_pred ---HHHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 ---AVEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 ---a~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+ ..+.+.+++.-+. ...........+.+|++|+..+|+++|+|+|....+...
T Consensus 99 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~ 178 (282)
T PRK13640 99 GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAG 178 (282)
T ss_pred cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 00111 1111222222110 111233344557899999999999999999997766544
No 186
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=8.8e-11 Score=117.30 Aligned_cols=112 Identities=18% Similarity=0.130 Sum_probs=78.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------- 455 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++..
T Consensus 16 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 16 QALFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred eeEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 48899999999999 999999999999999999999999999999886654310
Q ss_pred ---chHHHHH-------------------HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 456 ---SGAVEQL-------------------RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 456 ---~ga~eqL-------------------~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
....+.+ ..+.+.++++-+ . ........+..+.+|++|+..+|+++|+|||....+
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD 173 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence 0001111 111122233211 1 112234455558899999999999999999997666
Q ss_pred hHH
Q 008816 512 IIE 514 (552)
Q Consensus 512 ~~~ 514 (552)
...
T Consensus 174 ~~~ 176 (242)
T PRK11124 174 PEI 176 (242)
T ss_pred HHH
Confidence 543
No 187
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.2e-10 Score=116.90 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=76.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCcc-------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFRS------------------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r~------------------- 456 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.+.
T Consensus 17 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 17 EVLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 47899999999999 9999999999999999999999874 578888766543210
Q ss_pred ---hHHHHH--------------------HHHHHHcCCce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 457 ---GAVEQL--------------------RTHARRLQVPI-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 457 ---ga~eqL--------------------~~~~~~l~v~~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
...+.+ ..+.+.+++.- . ............+.+|++|+..+|+++|+|+|.
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~ 174 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 011111 11112223210 0 011223445556899999999999999999999
Q ss_pred CCCChH
Q 008816 508 RMQVII 513 (552)
Q Consensus 508 r~~~~~ 513 (552)
...+..
T Consensus 175 ~~LD~~ 180 (250)
T PRK14247 175 ANLDPE 180 (250)
T ss_pred ccCCHH
Confidence 766554
No 188
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.23 E-value=5.7e-11 Score=135.91 Aligned_cols=119 Identities=23% Similarity=0.122 Sum_probs=89.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------ 455 (552)
..+|++++|.+++|+ .++|+|+|||||||+++.|++++.+..|+|.+.+.|...
T Consensus 466 ~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI 543 (686)
T TIGR03797 466 PLILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSI 543 (686)
T ss_pred ccceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccH
Confidence 468999999999999 999999999999999999999999999999988776421
Q ss_pred --------chHHHHHHHHHHHcCCc-------------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 456 --------SGAVEQLRTHARRLQVP-------------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 456 --------~ga~eqL~~~~~~l~v~-------------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+...+++...++..++. +-+.+......+..|.+|++|+..+|+++|+|||+...|...
T Consensus 544 ~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 544 FENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 11123333333333221 222344566778889999999999999999999998777654
Q ss_pred HHHHHH
Q 008816 515 YYLFLL 520 (552)
Q Consensus 515 lm~eL~ 520 (552)
....+.
T Consensus 624 e~~i~~ 629 (686)
T TIGR03797 624 QAIVSE 629 (686)
T ss_pred HHHHHH
Confidence 433333
No 189
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.23 E-value=7.5e-11 Score=120.23 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=77.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------chHH---------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------SGAV--------------- 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------~ga~--------------- 459 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+ .+.+
T Consensus 21 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 21 TALRDASFTVPGGS--IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred EEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchh
Confidence 48899999999999 999999999999999999999999888888765543210 0000
Q ss_pred ----------------------HHHHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 ----------------------EQLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 ----------------------eqL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+....+.+.+++.-.. ...........+.+|++|+..+|+++|+|+|....+...
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~ 177 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT 177 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 0111122223332110 111234445558899999999999999999997765543
No 190
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1e-10 Score=118.92 Aligned_cols=112 Identities=15% Similarity=0.051 Sum_probs=78.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA---------------------- 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga---------------------- 458 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|+|.+.+.++.....
T Consensus 23 ~~l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 100 (269)
T PRK13648 23 FTLKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100 (269)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc
Confidence 37899999999999 999999999999999999999999999988887655321000
Q ss_pred -HH------------------HHHHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 -VE------------------QLRTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 -~e------------------qL~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+ .+..+.+.+++.-+ . ...........+.+|++|+..+|+++|+|+|....+...
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~ 177 (269)
T PRK13648 101 VKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177 (269)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 00 01111122233211 1 112334455568899999999999999999997766543
No 191
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=1.2e-10 Score=108.72 Aligned_cols=111 Identities=22% Similarity=0.198 Sum_probs=82.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 480 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~ 480 (552)
.+++++++.+.+|+ +++|+|+||+||||++..|++.+.+..|+|.+.+.+........ +.. .+.+..+ .
T Consensus 13 ~~l~~~~~~i~~g~--~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~----~~~--~i~~~~q---l 81 (157)
T cd00267 13 TALDNVSLTLKAGE--IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEE----LRR--RIGYVPQ---L 81 (157)
T ss_pred eeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHH----HHh--ceEEEee---C
Confidence 47889999999999 99999999999999999999999999999998877653211111 111 2333222 4
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 481 dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
...+..+.+|++++..+++++|+|||....+... ...+..++
T Consensus 82 S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~-~~~l~~~l 123 (157)
T cd00267 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS-RERLLELL 123 (157)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH-HHHHHHHH
Confidence 4556678889999999999999999997665443 44444443
No 192
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.23 E-value=7.4e-11 Score=116.26 Aligned_cols=137 Identities=15% Similarity=0.086 Sum_probs=89.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------- 457 (552)
..++++++|.+..|+ +++|+|+||+||||++..|++.+.+..|+|.+.+.+.....
T Consensus 18 ~~il~~vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGE--IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 358999999999999 99999999999999999999999999999988665432100
Q ss_pred ---HHHH-------------------HHHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 458 ---AVEQ-------------------LRTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 458 ---a~eq-------------------L~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
..+. ...+.+.+++.-. . ...........+.+|++++..+|+++|+|+|....+..
T Consensus 96 ~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 175 (220)
T TIGR02982 96 FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSK 175 (220)
T ss_pred CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHH
Confidence 0000 1111122232211 0 11123344555789999999999999999999877665
Q ss_pred HHHHHHHHHhhhhcc-ccEEEEEEec
Q 008816 514 EYYLFLLHIYLHTVC-EHFVNIITFR 538 (552)
Q Consensus 514 ~lm~eL~kl~~~~~~-~~~~~ii~~~ 538 (552)
....-+..|...... ...+.++++.
T Consensus 176 ~~~~l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 176 SGRDVVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 544444444333321 3444444444
No 193
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.23 E-value=8.6e-11 Score=117.27 Aligned_cols=112 Identities=16% Similarity=0.072 Sum_probs=78.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+.....
T Consensus 16 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 16 KALNDLSLYVDPGE--LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred EEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 47899999999999 99999999999999999999999999999888765532100
Q ss_pred HHHHH--------------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 458 AVEQL--------------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 458 a~eqL--------------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
..+.+ ..+.+.+++.-.. ...........+.+|++|+..+|+++|+|+|+..
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~ 173 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 01111 1111122222110 0112233445578999999999999999999977
Q ss_pred CChHH
Q 008816 510 QVIIE 514 (552)
Q Consensus 510 ~~~~~ 514 (552)
.+...
T Consensus 174 LD~~~ 178 (242)
T TIGR03411 174 MTDEE 178 (242)
T ss_pred CCHHH
Confidence 66544
No 194
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=1.1e-10 Score=119.49 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=78.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------ch----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------------SG---------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------------~g---------- 457 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++++.+..|+|.+.+.++.. .+
T Consensus 21 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 21 RALFDVNLTIEDGS--YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred ceeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 48899999999999 999999999999999999999999998988876644210 00
Q ss_pred ----HHHHHH------------------HHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 458 ----AVEQLR------------------THARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 458 ----a~eqL~------------------~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+.+. .+.+.+++. ... ........+..+.+|++|+..+|+++|+|+|+...+.
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 178 (280)
T PRK13649 99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178 (280)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 011110 111122332 111 1122344555688999999999999999999976655
Q ss_pred HH
Q 008816 513 IE 514 (552)
Q Consensus 513 ~~ 514 (552)
..
T Consensus 179 ~~ 180 (280)
T PRK13649 179 KG 180 (280)
T ss_pred HH
Confidence 43
No 195
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=1e-10 Score=113.25 Aligned_cols=117 Identities=10% Similarity=0.031 Sum_probs=79.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH--hhCCceEEEeeecCCcchHHHHHHHHHHHc-C-Cceee
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTFRSGAVEQLRTHARRL-Q-VPIFE 475 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l--~~~ggkVll~~~D~~r~ga~eqL~~~~~~l-~-v~~~~ 475 (552)
..++++++|.+.+|+ +++|+|+||+||||+++.|++.+ .+..|.|.+.+.++. ..++.....+ . ..++.
T Consensus 20 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~~~~~i~~~~q~~~~~~ 92 (192)
T cd03232 20 RQLLNNISGYVKPGT--LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KNFQRSTGYVEQQDVHSP 92 (192)
T ss_pred eEeEEccEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HHhhhceEEecccCcccc
Confidence 358999999999999 99999999999999999999865 367899988776642 0110000000 0 00000
Q ss_pred c------------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 476 K------------GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 476 ~------------~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
. .......+..+.+|++|+..+|+++|+|+|....+.......+..+.
T Consensus 93 ~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~ 152 (192)
T cd03232 93 NLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLK 152 (192)
T ss_pred CCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 0 00234455568889999999999999999998776654443333333
No 196
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.22 E-value=8.7e-11 Score=116.01 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=80.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------h------------HH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------G------------AV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------g------------a~ 459 (552)
.++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.++.+. + ..
T Consensus 28 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 105 (226)
T cd03248 28 LVLQDVSFTLHPGE--VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQ 105 (226)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHH
Confidence 48899999999999 9999999999999999999999999999988766442100 0 00
Q ss_pred HHH---------------------HHHHHHc--CCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQL---------------------RTHARRL--QVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL---------------------~~~~~~l--~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+ ..+.+.+ ++.-. ............+.+|++++..+|+++|+|+|....+...
T Consensus 106 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 185 (226)
T cd03248 106 DNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185 (226)
T ss_pred HHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 000 0111111 12110 1112344556668999999999999999999997665543
Q ss_pred HHHHHHHHh
Q 008816 515 YYLFLLHIY 523 (552)
Q Consensus 515 lm~eL~kl~ 523 (552)
.+.+.+++
T Consensus 186 -~~~l~~~l 193 (226)
T cd03248 186 -EQQVQQAL 193 (226)
T ss_pred -HHHHHHHH
Confidence 34444433
No 197
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.22 E-value=7.5e-12 Score=120.94 Aligned_cols=132 Identities=16% Similarity=0.179 Sum_probs=89.5
Q ss_pred HHHHHhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHH--------
Q 008816 389 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE-------- 460 (552)
Q Consensus 389 ~L~~il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~e-------- 460 (552)
.|.+.+. .-.++++++|.+.+|+ +++++||||+||||++.++.++..++.|+|++.+.|+-...-..
T Consensus 9 ~l~K~y~---kr~Vv~~Vsl~v~~GE--iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 9 NLAKSYK---KRKVVNDVSLEVNSGE--IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred hhhHhhC---CeeeeeeeeEEEcCCc--EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccc
Confidence 3455554 2357889999999999 99999999999999999999999999999999999864211100
Q ss_pred ---------------H--------------------HHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 008816 461 ---------------Q--------------------LRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLV 503 (552)
Q Consensus 461 ---------------q--------------------L~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVII 503 (552)
. +..+.+.+++.-.. .++..+-.+.-|.-|++|+..+|.++|+
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLL 163 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILL 163 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEe
Confidence 0 00111111221111 1222233334467899999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHhhhh
Q 008816 504 DTAGRMQVIIEYYLFLLHIYLHT 526 (552)
Q Consensus 504 DtpGr~~~~~~lm~eL~kl~~~~ 526 (552)
|+|-.. .+.-.+.++++|+...
T Consensus 164 DEPFAG-VDPiaV~dIq~iI~~L 185 (243)
T COG1137 164 DEPFAG-VDPIAVIDIQRIIKHL 185 (243)
T ss_pred cCCccC-CCchhHHHHHHHHHHH
Confidence 999754 4445566666666443
No 198
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.22 E-value=1e-10 Score=117.63 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=76.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec-----CCcch------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-----TFRSG------------------ 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D-----~~r~g------------------ 457 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+ +.+..
T Consensus 17 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (253)
T TIGR02323 17 KGCRDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQN 94 (253)
T ss_pred eEeecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeC
Confidence 47899999999999 999999999999999999999999988888876543 11000
Q ss_pred ----------HHHHH-------------------HHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Q 008816 458 ----------AVEQL-------------------RTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDT 505 (552)
Q Consensus 458 ----------a~eqL-------------------~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDt 505 (552)
..+.+ ..+.+.+++. ... ........+..+.+|++|+..+|+++|+|+
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDE 174 (253)
T TIGR02323 95 PRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174 (253)
T ss_pred cccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 00010 1111222331 110 111233345558999999999999999999
Q ss_pred CCCCCChHH
Q 008816 506 AGRMQVIIE 514 (552)
Q Consensus 506 pGr~~~~~~ 514 (552)
|....+...
T Consensus 175 P~~~LD~~~ 183 (253)
T TIGR02323 175 PTGGLDVSV 183 (253)
T ss_pred CCccCCHHH
Confidence 997665543
No 199
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=1.2e-10 Score=119.09 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=78.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC-------------------------c
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------------------R 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~-------------------------r 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|+|.+.+.+.. .
T Consensus 16 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 16 EALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 47899999999999 99999999999999999999999999898887665431 0
Q ss_pred chHHHHH------------------HHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 456 SGAVEQL------------------RTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 456 ~ga~eqL------------------~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
....+.+ ..+.+.+++.-+.. .......+..+.+|++|+..+|+++|+|+|+...+....
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 173 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 0001111 11112223321110 112333445578999999999999999999987766543
Q ss_pred H
Q 008816 516 Y 516 (552)
Q Consensus 516 m 516 (552)
.
T Consensus 174 ~ 174 (275)
T PRK13639 174 S 174 (275)
T ss_pred H
Confidence 3
No 200
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.22 E-value=2.5e-11 Score=110.06 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=77.5
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-------------------------
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG------------------------- 457 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g------------------------- 457 (552)
|+++++.+.+|+ +++|+|+||+||||+++.|++...+..|.|.+.+.++....
T Consensus 1 L~~v~~~i~~g~--~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGE--IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTS--EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCC--EEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999999 99999999999999999999999999999998877654210
Q ss_pred --HHHHHHHHHHHcCCcee-e-----cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 458 --AVEQLRTHARRLQVPIF-E-----KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 458 --a~eqL~~~~~~l~v~~~-~-----~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
..++...+.+.+++.-+ . ........+..+.+|++|+..+++++|+|+|+
T Consensus 79 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 79 NESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred ccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 01122233333332211 1 11345667777899999999999999999997
No 201
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=8e-11 Score=118.70 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=77.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc----------------------hH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------------------GA 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------------------ga 458 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++.+. ..
T Consensus 16 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 93 (255)
T PRK11231 16 RILNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITV 93 (255)
T ss_pred EEEeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccH
Confidence 48899999999999 9999999999999999999999999889888765442110 00
Q ss_pred HHHH----------------------HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 VEQL----------------------RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 ~eqL----------------------~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+ ....+.+++.-+ . ...........+.+|++|+..+|+++|+|+|....+...
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 0101 011111222110 0 111233344557899999999999999999997766543
No 202
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.22 E-value=1.2e-10 Score=117.56 Aligned_cols=119 Identities=17% Similarity=0.122 Sum_probs=81.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec-----CCcchH-----------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-----TFRSGA----------------- 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D-----~~r~ga----------------- 458 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.+ +.+...
T Consensus 20 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 20 KGCRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred eeeeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 47899999999999 999999999999999999999999999988877655 221000
Q ss_pred -----------HHHH-------------------HHHHHHcCCc--ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Q 008816 459 -----------VEQL-------------------RTHARRLQVP--IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDT 505 (552)
Q Consensus 459 -----------~eqL-------------------~~~~~~l~v~--~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDt 505 (552)
.+.+ ..+.+.+++. .. .........+..+.+|++|+..+|+++|+|+
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0000 0112222332 11 1122334455568999999999999999999
Q ss_pred CCCCCChHHHHHHHHHH
Q 008816 506 AGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 506 pGr~~~~~~lm~eL~kl 522 (552)
|+...+.. ....+.++
T Consensus 178 Pt~~LD~~-~~~~l~~~ 193 (258)
T PRK11701 178 PTGGLDVS-VQARLLDL 193 (258)
T ss_pred CcccCCHH-HHHHHHHH
Confidence 99766543 34444443
No 203
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.22 E-value=1.1e-10 Score=118.86 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=79.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc-----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------------------- 456 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------------------- 456 (552)
..++++++|.+.+|+ +++|+|+||+|||||++.|++.+.+..|+|.+.+.++...
T Consensus 25 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 358999999999999 9999999999999999999999999999888766543110
Q ss_pred ----hHHHH-------------------HHHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 457 ----GAVEQ-------------------LRTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 457 ----ga~eq-------------------L~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
...+. +..+...+++. +.. ........+..+.+|++|+..+|+++|+|+|....
T Consensus 103 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~L 182 (268)
T PRK10419 103 NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182 (268)
T ss_pred CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 00011 11112223432 111 12234556666899999999999999999999766
Q ss_pred ChH
Q 008816 511 VII 513 (552)
Q Consensus 511 ~~~ 513 (552)
+..
T Consensus 183 D~~ 185 (268)
T PRK10419 183 DLV 185 (268)
T ss_pred CHH
Confidence 554
No 204
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.22 E-value=1e-10 Score=122.88 Aligned_cols=114 Identities=13% Similarity=0.051 Sum_probs=81.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------- 457 (552)
..++++++|.+.+|+ +++|+|+||+||||++..|++++.+..|+|.+.+.|+....
T Consensus 34 ~~~l~~vsl~i~~Ge--~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l 111 (331)
T PRK15079 34 LKAVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASL 111 (331)
T ss_pred eEEEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhc
Confidence 468999999999999 99999999999999999999999999999988776642111
Q ss_pred -----HHHHHH--------------------HHHHHcCCc--ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 458 -----AVEQLR--------------------THARRLQVP--IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 458 -----a~eqL~--------------------~~~~~l~v~--~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
..+++. .+.+.++++ +. ............|.+|++|+..+|+++|+|||+..
T Consensus 112 ~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~ 191 (331)
T PRK15079 112 NPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSA 191 (331)
T ss_pred CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 111111 011122331 10 11122344555589999999999999999999987
Q ss_pred CChHHH
Q 008816 510 QVIIEY 515 (552)
Q Consensus 510 ~~~~~l 515 (552)
.+....
T Consensus 192 LD~~~~ 197 (331)
T PRK15079 192 LDVSIQ 197 (331)
T ss_pred CCHHHH
Confidence 765443
No 205
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.21 E-value=9.6e-11 Score=118.92 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=77.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------H
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------A 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------a 458 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++.... .
T Consensus 21 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 98 (265)
T PRK10253 21 TVAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITV 98 (265)
T ss_pred EEeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcH
Confidence 48899999999999 99999999999999999999999999999888765432100 0
Q ss_pred HHHH----------------------HHHHHHcCCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 VEQL----------------------RTHARRLQVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 ~eqL----------------------~~~~~~l~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+ ..+.+.+++.-+ ............+.+|++|+..+|+++|+|+|+...+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 0111 011111222110 0011223334447899999999999999999997665543
No 206
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.2e-10 Score=117.53 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=76.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.+
T Consensus 18 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 18 HAVEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred eeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 48899999999999 9999999999999999999998864 57888886644310
Q ss_pred ----chHHHHHH-------------------HHHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 456 ----SGAVEQLR-------------------THARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 456 ----~ga~eqL~-------------------~~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
....+.+. .+.+.+++. .. .........+..+.+|++|+..+|+++|+|+|
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 01111111 111122321 00 01122344555689999999999999999999
Q ss_pred CCCCChHH
Q 008816 507 GRMQVIIE 514 (552)
Q Consensus 507 Gr~~~~~~ 514 (552)
+...+...
T Consensus 176 t~~LD~~~ 183 (258)
T PRK14241 176 CSALDPIS 183 (258)
T ss_pred CccCCHHH
Confidence 97665543
No 207
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=1.2e-10 Score=113.96 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=76.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.++++++|.+.+| +++|+||||+||||+++.|++.+.+..|+|.+.+.++.+. ...
T Consensus 14 ~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 14 RALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred EEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence 4789999999885 8999999999999999999999999999998876543210 011
Q ss_pred HHH------------------HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQL------------------RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL------------------~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+ ..+.+.+++.-+ . ........+..+.+|++|+..+|+++|+|+|+...+...
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 165 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 111 111222233211 0 111233344558899999999999999999997665543
No 208
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.21 E-value=1.3e-10 Score=113.99 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=77.6
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAVEQ 461 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~eq 461 (552)
++.+++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.+ ....+.
T Consensus 13 ~~~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGE--IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3468999999999 999999999999999999999999999999886655311 011111
Q ss_pred H------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 462 L------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 462 L------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
+ ..+.+.+++.-.. ........+..+.+|++|+..+|+++|+|+|+...+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~ 164 (213)
T TIGR01277 91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164 (213)
T ss_pred HHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 1 1112222332110 1112344555688999999999999999999976655433
No 209
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=2.1e-10 Score=116.63 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=78.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++.+.+ ..|.|.+.+.++.+
T Consensus 33 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 33 QALFDVDLDIPEKT--VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred EEEEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 58999999999999 9999999999999999999999874 78888876644310
Q ss_pred ---chHHHHH--------------------HHHHHHcCCce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 456 ---SGAVEQL--------------------RTHARRLQVPI-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 456 ---~ga~eqL--------------------~~~~~~l~v~~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
....+.+ ..+.+.+++.- . .........+..+.+|++|+..+|+++|+|+|
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 190 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0111111 11112223310 0 11223455666689999999999999999999
Q ss_pred CCCCChHH
Q 008816 507 GRMQVIIE 514 (552)
Q Consensus 507 Gr~~~~~~ 514 (552)
....+...
T Consensus 191 t~~LD~~~ 198 (267)
T PRK14235 191 CSALDPIA 198 (267)
T ss_pred CcCCCHHH
Confidence 97766544
No 210
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.21 E-value=8.6e-11 Score=131.71 Aligned_cols=116 Identities=22% Similarity=0.196 Sum_probs=85.9
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC-------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------------------- 454 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~------------------------- 454 (552)
..+|+++++.+++|+ .++|+|+||+||||+++.|++++.+..|+|.+.+.|.-
T Consensus 356 ~~il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti 433 (582)
T PRK11176 356 VPALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTI 433 (582)
T ss_pred CccccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchH
Confidence 458999999999999 99999999999999999999999999999998776531
Q ss_pred -------cch--HHHHHHHHHHHcC-------------CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 455 -------RSG--AVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 455 -------r~g--a~eqL~~~~~~l~-------------v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
+.. ..+.+....+..+ ..+-+.+......+..|.+|++|+..+++++|+|||+...|.
T Consensus 434 ~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~ 513 (582)
T PRK11176 434 ANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513 (582)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCH
Confidence 010 1122222222221 112223344566778899999999999999999999987776
Q ss_pred HHHHH
Q 008816 513 IEYYL 517 (552)
Q Consensus 513 ~~lm~ 517 (552)
+....
T Consensus 514 ~t~~~ 518 (582)
T PRK11176 514 ESERA 518 (582)
T ss_pred HHHHH
Confidence 54433
No 211
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=5.5e-11 Score=118.37 Aligned_cols=112 Identities=18% Similarity=0.119 Sum_probs=76.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+.+|+|.+.+.+.....
T Consensus 19 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (237)
T PRK11614 19 QALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT 96 (237)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence 48899999999999 99999999999999999999999999999988765532111
Q ss_pred HHHHHHH----------------HHHHc-CCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 AVEQLRT----------------HARRL-QVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 a~eqL~~----------------~~~~l-~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+.. +.+.+ ++.-. ............+.+|++|+..+|+++|+|+|+...+...
T Consensus 97 v~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~ 172 (237)
T PRK11614 97 VEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172 (237)
T ss_pred HHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHH
Confidence 0111100 00001 01000 0011123344447889999999999999999997766543
No 212
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=2.1e-10 Score=115.02 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=78.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh---hCCceEEEeeecCCcc---------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTFRS--------------------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~---~~ggkVll~~~D~~r~--------------------- 456 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+. +..|+|.+.+.++...
T Consensus 16 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~ 93 (246)
T PRK14269 16 QALFDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93 (246)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccc
Confidence 58899999999999 999999999999999999999874 5778888766543210
Q ss_pred hHHHH--------------------HHHHHHHcCCce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 457 GAVEQ--------------------LRTHARRLQVPI-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 457 ga~eq--------------------L~~~~~~l~v~~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
...+. ...+.+.+++.- . .........+..+.+|++|+..+|+++|+|+|....
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L 173 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL 173 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 00111 111223334420 1 112234556667899999999999999999999776
Q ss_pred ChHH
Q 008816 511 VIIE 514 (552)
Q Consensus 511 ~~~~ 514 (552)
+...
T Consensus 174 D~~~ 177 (246)
T PRK14269 174 DPIS 177 (246)
T ss_pred CHHH
Confidence 6543
No 213
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.21 E-value=1.1e-10 Score=136.68 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=87.0
Q ss_pred CCC-cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch---------H-------
Q 008816 396 PRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------A------- 458 (552)
Q Consensus 396 ~~~-~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------a------- 458 (552)
|.+ ++.+|++++|.++.|+ +++|||++||||||++..|.+++.|..|.|+|.+.|..... -
T Consensus 361 PsRpdv~Il~g~sl~i~~G~--~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl 438 (1228)
T KOG0055|consen 361 PSRPDVKILKGVSLKIPSGQ--TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL 438 (1228)
T ss_pred CCCCcchhhCCeEEEeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh
Confidence 444 4789999999999999 99999999999999999999999999999999988864211 0
Q ss_pred -----------------HHHHHHHH-------------HHcCCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 459 -----------------VEQLRTHA-------------RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 459 -----------------~eqL~~~~-------------~~l~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
.+.....+ +.++..+-+.+....-.+..|.||++|+..+|.++|+|||+.
T Consensus 439 F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTS 518 (1228)
T KOG0055|consen 439 FATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATS 518 (1228)
T ss_pred hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCccc
Confidence 11111111 111222233344455566679999999999999999999998
Q ss_pred CCChH
Q 008816 509 MQVII 513 (552)
Q Consensus 509 ~~~~~ 513 (552)
..|.+
T Consensus 519 aLD~~ 523 (1228)
T KOG0055|consen 519 ALDAE 523 (1228)
T ss_pred ccCHH
Confidence 77654
No 214
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.21 E-value=6.5e-11 Score=135.91 Aligned_cols=122 Identities=14% Similarity=0.070 Sum_probs=89.3
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc-----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------------------- 456 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------------------- 456 (552)
..+|++++|.+++|+ .++|+|++||||||+++.|++++.+..|+|.+.+.|....
T Consensus 492 ~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi 569 (710)
T TIGR03796 492 PPLIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569 (710)
T ss_pred CCcccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccH
Confidence 458999999999999 9999999999999999999999999999999877664210
Q ss_pred ----------hHHHHHHHHHHHcC-------------CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 457 ----------GAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 457 ----------ga~eqL~~~~~~l~-------------v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
...+.+...++..+ ..+-+.+......+..|.+|++|+..+|+++|+|||+...|..
T Consensus 570 ~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~ 649 (710)
T TIGR03796 570 RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPE 649 (710)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHH
Confidence 01122222222211 1122334456667788999999999999999999999877765
Q ss_pred HHHHHHHHHh
Q 008816 514 EYYLFLLHIY 523 (552)
Q Consensus 514 ~lm~eL~kl~ 523 (552)
.....+..+.
T Consensus 650 te~~i~~~l~ 659 (710)
T TIGR03796 650 TEKIIDDNLR 659 (710)
T ss_pred HHHHHHHHHH
Confidence 5444444443
No 215
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.7e-10 Score=116.01 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=76.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+. +..|.|.+.+.++..
T Consensus 20 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 20 QALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred eeecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 47899999999999 999999999999999999999864 467888776544310
Q ss_pred ---chHHHHHH-------------------HHHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLR-------------------THARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~-------------------~~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+. ...+.+++. .. .........+..+.+|++|+..+|+++|+|+|+
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt 177 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPA 177 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00111111 111122221 00 011223445566889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 178 ~~LD~~~ 184 (253)
T PRK14242 178 SALDPIA 184 (253)
T ss_pred ccCCHHH
Confidence 7766543
No 216
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.21 E-value=1.7e-10 Score=115.87 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=77.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHH--HhhCCceEEEeeecCCcc----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTFRS---------------------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~--l~~~ggkVll~~~D~~r~---------------------- 456 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++. +.+..|+|.+.+.++.+.
T Consensus 21 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 98 (252)
T CHL00131 21 EILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPG 98 (252)
T ss_pred EeeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccc
Confidence 48999999999999 9999999999999999999997 457788887755432100
Q ss_pred -hHHHHH-------------------------HHHHHHcCCc--eeecCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 457 -GAVEQL-------------------------RTHARRLQVP--IFEKGY--EKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 457 -ga~eqL-------------------------~~~~~~l~v~--~~~~~~--~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
...+.+ ..+...++++ ...... ........+.+|++|+..+|+++|+|+|
T Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 178 (252)
T CHL00131 99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178 (252)
T ss_pred ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 001111 1112223332 111111 2455667789999999999999999999
Q ss_pred CCCCChHH
Q 008816 507 GRMQVIIE 514 (552)
Q Consensus 507 Gr~~~~~~ 514 (552)
+...+...
T Consensus 179 t~~LD~~~ 186 (252)
T CHL00131 179 DSGLDIDA 186 (252)
T ss_pred cccCCHHH
Confidence 97665543
No 217
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.20 E-value=1e-10 Score=118.11 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=77.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe--------eecCCcc-----hHH--------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--------ACDTFRS-----GAV-------- 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~--------~~D~~r~-----ga~-------- 459 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+. ..+.+-. ...
T Consensus 18 ~vl~~vs~~i~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~ 95 (251)
T PRK09544 18 RVLSDVSLELKPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPG 95 (251)
T ss_pred eEEEeEEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcccc
Confidence 47899999999999 999999999999999999999999888877543 2221100 111
Q ss_pred ---HHHHHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 ---EQLRTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 ---eqL~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+..+.+.+++.-. . ........+..+.+|++|+..+|+++|+|+|+...+...
T Consensus 96 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 155 (251)
T PRK09544 96 TKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNG 155 (251)
T ss_pred ccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 112222333444311 1 112344556668999999999999999999997766543
No 218
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.20 E-value=1.6e-10 Score=116.66 Aligned_cols=111 Identities=17% Similarity=0.136 Sum_probs=76.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------H
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------A 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------a 458 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.... .
T Consensus 15 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (256)
T TIGR03873 15 LIVDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTV 92 (256)
T ss_pred EEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCH
Confidence 58999999999999 99999999999999999999999999998888665432100 0
Q ss_pred HHHH----------------------HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 VEQL----------------------RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 ~eqL----------------------~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+.+ ....+.+++.-. . ...........+.+|++|+..+|+++|+|+|+...+..
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 171 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 1111 011111222110 0 11123334445788999999999999999999776554
No 219
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.20 E-value=1.2e-10 Score=124.44 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=79.5
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee----cCCcc------------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC----DTFRS------------------ 456 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~----D~~r~------------------ 456 (552)
...++++++|.+.+|+ +++|+|+||+|||||+++|++.+.+..|+|.+.+. |+...
T Consensus 36 ~~~~l~~vsf~i~~Ge--i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 36 LVVGVANASLDIEEGE--ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred CEEEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 3457899999999999 99999999999999999999999999999998763 32110
Q ss_pred --------hHHHHH------------------HHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 457 --------GAVEQL------------------RTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 457 --------ga~eqL------------------~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
...+.+ ..+.+.+++.-+.. ..........+.+|++|+..+|+++|+|+|..
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts 193 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFS 193 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 001111 11122223321111 11233344558999999999999999999997
Q ss_pred CCChHH
Q 008816 509 MQVIIE 514 (552)
Q Consensus 509 ~~~~~~ 514 (552)
..+...
T Consensus 194 ~LD~~~ 199 (382)
T TIGR03415 194 ALDPLI 199 (382)
T ss_pred cCCHHH
Confidence 766544
No 220
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.20 E-value=1.3e-10 Score=119.12 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=82.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA---------------------- 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga---------------------- 458 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++++. ..|+|.+.+.++.+...
T Consensus 18 ~~l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~ 94 (275)
T cd03289 18 AVLENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFR 94 (275)
T ss_pred cceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHH
Confidence 47999999999999 999999999999999999999987 78989887766421100
Q ss_pred ----------HHHHHHHHHHcCCcee-------------ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 459 ----------VEQLRTHARRLQVPIF-------------EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 459 ----------~eqL~~~~~~l~v~~~-------------~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
.+.+....+.+++.-+ +.+.........+.+|++|+..+++++|+|+|+...+....
T Consensus 95 ~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~ 174 (275)
T cd03289 95 KNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174 (275)
T ss_pred HHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 1111222233333211 11122556667789999999999999999999976655433
Q ss_pred HHHHHHHh
Q 008816 516 YLFLLHIY 523 (552)
Q Consensus 516 m~eL~kl~ 523 (552)
..+.+++
T Consensus 175 -~~l~~~l 181 (275)
T cd03289 175 -QVIRKTL 181 (275)
T ss_pred -HHHHHHH
Confidence 3444433
No 221
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.20 E-value=1.1e-10 Score=117.56 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=73.9
Q ss_pred cccccccccc-----CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee-------ecC---CcchHHHHHH---
Q 008816 402 ILRDVHAAKE-----QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA-------CDT---FRSGAVEQLR--- 463 (552)
Q Consensus 402 iL~di~~~~~-----~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~-------~D~---~r~ga~eqL~--- 463 (552)
.+.++++.+. +|+ +++|+|+||+||||+++.|++++.+..|.|.+.+ .+. +.....+.+.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge--~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 9 TLGEFTLEVEGGSISESE--VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred ccCcEEEEEecCCcCCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHh
Confidence 3445555554 677 9999999999999999999999999888776543 221 1111222221
Q ss_pred -----------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHH
Q 008816 464 -----------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYY 516 (552)
Q Consensus 464 -----------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm 516 (552)
.+.+.+++.-.. ........+..+.+|++|+..+++++|+|||+...+.....
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~ 152 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRL 152 (246)
T ss_pred hhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 112233332111 11233445666899999999999999999999776665443
No 222
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.20 E-value=1.7e-10 Score=117.57 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=78.9
Q ss_pred CcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec------C-Cc--chHHHHHH-----
Q 008816 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD------T-FR--SGAVEQLR----- 463 (552)
Q Consensus 398 ~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D------~-~r--~ga~eqL~----- 463 (552)
....++++++|.+.+|+ +++|+|+||+||||++.+|++.+.+..|.|.+.+.. . +. ....+.+.
T Consensus 35 ~~~~il~~is~~i~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~ 112 (264)
T PRK13546 35 KTFFALDDISLKAYEGD--VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLC 112 (264)
T ss_pred CceEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHH
Confidence 34568999999999999 999999999999999999999999998888765421 1 00 01111111
Q ss_pred -------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 464 -------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 464 -------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+.+.+++.-.. ........+..+.+|++|+..+|+++|+|+|....+..
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 113 MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 011122222110 11234556666889999999999999999999776654
No 223
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.20 E-value=1.4e-10 Score=128.42 Aligned_cols=112 Identities=15% Similarity=0.130 Sum_probs=79.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+.+|+ +++|+||||+|||||++.|++.+.+..|.|.+.+.++.+..
T Consensus 25 ~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 102 (510)
T PRK15439 25 EVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLS 102 (510)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCc
Confidence 48899999999999 99999999999999999999999999999988765432110
Q ss_pred HH--------------HHHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 AV--------------EQLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 a~--------------eqL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.. +++..+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|||+...+...
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~ 175 (510)
T PRK15439 103 VKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAE 175 (510)
T ss_pred HHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 00 11122233334432111 11233445568999999999999999999997665543
No 224
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.20 E-value=1e-10 Score=128.62 Aligned_cols=112 Identities=15% Similarity=0.064 Sum_probs=77.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHH--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE-------------------- 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~e-------------------- 460 (552)
.+|++++|.+.+|+ +++|+|||||||||+++.|++.+.+..|.|.+.+.+........
T Consensus 17 ~il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 17 KTLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPG 94 (490)
T ss_pred eecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccc
Confidence 48899999999999 99999999999999999999999999999887554432110000
Q ss_pred --------------------HHHHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 461 --------------------QLRTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 461 --------------------qL~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+...+.+.+++.-. . ........+..|.+|++|+..+|+++|+|||+...|...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 170 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVAS 170 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 01111222233211 0 111233344558899999999999999999996665543
No 225
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.20 E-value=8.2e-11 Score=132.27 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=86.3
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------ 455 (552)
..+|++++|.+++|+ .++|+|++|+||||+++.|++++.+.+|+|.+.+.|...
T Consensus 354 ~~il~~i~l~i~~Ge--~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti 431 (592)
T PRK10790 354 NLVLQNINLSVPSRG--FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTF 431 (592)
T ss_pred CceeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchH
Confidence 358999999999999 999999999999999999999999999999987765320
Q ss_pred --------chHHHHHHHHHHHcCC-------------ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 456 --------SGAVEQLRTHARRLQV-------------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 456 --------~ga~eqL~~~~~~l~v-------------~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
....+++...++..++ .+-+.+......+..|.+|++|+..+++++|+|||+...|...
T Consensus 432 ~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t 511 (592)
T PRK10790 432 LANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511 (592)
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 1011223333333321 1222334456678889999999999999999999998777655
Q ss_pred HH
Q 008816 515 YY 516 (552)
Q Consensus 515 lm 516 (552)
..
T Consensus 512 ~~ 513 (592)
T PRK10790 512 EQ 513 (592)
T ss_pred HH
Confidence 43
No 226
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.20 E-value=9.6e-11 Score=129.95 Aligned_cols=135 Identities=19% Similarity=0.133 Sum_probs=93.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|+++++.+++|+ .++|+|++|+||||+++.|++++.+..|+|.+.+.|.....
T Consensus 336 ~il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 336 PALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413 (529)
T ss_pred ccccceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence 58999999999999 99999999999999999999999999999998877642110
Q ss_pred ----------HHHHHHHHHHHcCC-------------ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 ----------AVEQLRTHARRLQV-------------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 ----------a~eqL~~~~~~l~v-------------~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+++....+..++ .+-+.+......+..|.+|++|+..+++++|+|||+...|...
T Consensus 414 ~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~ 493 (529)
T TIGR02857 414 ENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 11222222222222 1112233455667779999999999999999999998776654
Q ss_pred HHHHHHHHhhhhccccEEEEEEec
Q 008816 515 YYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 515 lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
.-..+..+.... ....+.++++.
T Consensus 494 ~~~i~~~l~~~~-~~~t~i~itH~ 516 (529)
T TIGR02857 494 EALVTEALRALA-QGRTVLLVTHR 516 (529)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecC
Confidence 443333333222 23444555444
No 227
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.20 E-value=9.1e-11 Score=129.08 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=79.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC--------c-chHHHHH---------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------R-SGAVEQL--------- 462 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~--------r-~ga~eqL--------- 462 (552)
.+|++++|.+.+|+ +++|+|+||+|||||+++|++.+.+..|.|.+.+.+.+ . ....+.+
T Consensus 38 ~IL~nVSfsI~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~ 115 (549)
T PRK13545 38 YALNNISFEVPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGL 115 (549)
T ss_pred eEEeeeEEEEeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCC
Confidence 48999999999999 99999999999999999999999999999987554311 0 0111111
Q ss_pred ---------HHHHHHcCCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 463 ---------RTHARRLQVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 463 ---------~~~~~~l~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+.+++.-+ ............|.+|++|+..+|+++|+|+|+...|...
T Consensus 116 ~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 116 TKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF 178 (549)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 112223343211 1112345556668899999999999999999997666543
No 228
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.20 E-value=1.3e-10 Score=114.47 Aligned_cols=111 Identities=10% Similarity=-0.037 Sum_probs=74.5
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE-EeeecC--------Cc-chHHHHHHHHHHHcC-
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-MAACDT--------FR-SGAVEQLRTHARRLQ- 470 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl-l~~~D~--------~r-~ga~eqL~~~~~~l~- 470 (552)
+|++++|.+++|+ +++|+||||+||||+++.|++.+.+..|.|. +.+... +. ....+.+.......+
T Consensus 2 vl~~vs~~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~ 79 (213)
T PRK15177 2 VLDKTDFVMGYHE--HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGL 79 (213)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCC
Confidence 5789999999999 9999999999999999999999999999986 433211 10 112233322222111
Q ss_pred --------------Cceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 471 --------------VPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 471 --------------v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
++... ...........+.++++|+..+|+++|+|+|....++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 80 DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 11000 001123344457889999999999999999976665544
No 229
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.3e-10 Score=123.14 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=76.2
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------c-------------hH
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------------S-------------GA 458 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------------~-------------ga 458 (552)
+++|.+.+|+ +++|+|||||||||+++.|++.+.+..|+|.+.+.++.. . ..
T Consensus 16 ~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQG--ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 7899999999 999999999999999999999999999999886654210 0 01
Q ss_pred HHH------------HHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 VEQ------------LRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 ~eq------------L~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+. ...+.+.+++.-+. ........+..|.+|++|+..+|+++|+|+|....+..
T Consensus 94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~ 162 (352)
T PRK11144 94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHH
Confidence 111 11223333443111 11234445566899999999999999999999766553
No 230
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=2e-10 Score=117.45 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=78.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.++++++|.+.+|+ +++|+|+||+||||++..|++++.+..|+|.+.+.++....
T Consensus 21 ~~l~~v~l~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (277)
T PRK13642 21 NQLNGVSFSITKGE--WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT 98 (277)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCC
Confidence 47899999999999 99999999999999999999999999999988765532100
Q ss_pred HHHHHH------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 458 AVEQLR------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 458 a~eqL~------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+. ...+.+++.-+. ...........+.+|++|+..+|+++|+|+|....+....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~ 176 (277)
T PRK13642 99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176 (277)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 011111 011111221110 0112333445578999999999999999999977665443
No 231
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.19 E-value=1.4e-10 Score=121.80 Aligned_cols=119 Identities=14% Similarity=0.093 Sum_probs=82.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC---CceEEEeeecCCcch-------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTFRSG------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~---ggkVll~~~D~~r~g------------------- 457 (552)
..++++++|.+.+|+ +++|+|+||+||||++..|++++.+. .|+|.+.+.|+.+..
T Consensus 29 ~~~l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 29 VTAVNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 468999999999999 99999999999999999999999875 788888776642110
Q ss_pred ---------HHHHHH-------------------HHHHHcCCcee-----ecCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Q 008816 458 ---------AVEQLR-------------------THARRLQVPIF-----EKGYEKDPAIVAKEAIQEATRNGSDVVLVD 504 (552)
Q Consensus 458 ---------a~eqL~-------------------~~~~~l~v~~~-----~~~~~~dp~~iar~aIa~a~~~~~DvVIID 504 (552)
..+++. .+.+.++++-. ............|.+|++|+..+|++||+|
T Consensus 107 ~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilD 186 (330)
T PRK09473 107 MTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIAD 186 (330)
T ss_pred hhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 011111 01112233210 011123444556899999999999999999
Q ss_pred CCCCCCChHHHHHHHH
Q 008816 505 TAGRMQVIIEYYLFLL 520 (552)
Q Consensus 505 tpGr~~~~~~lm~eL~ 520 (552)
||+...|.......+.
T Consensus 187 EPts~LD~~~~~~i~~ 202 (330)
T PRK09473 187 EPTTALDVTVQAQIMT 202 (330)
T ss_pred CCCccCCHHHHHHHHH
Confidence 9998776654433333
No 232
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.19 E-value=2.2e-10 Score=114.57 Aligned_cols=119 Identities=17% Similarity=0.103 Sum_probs=79.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH--hhCCceEEEeeecCCc----------chH----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTFR----------SGA---------- 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l--~~~ggkVll~~~D~~r----------~ga---------- 458 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+ .+..|.|.+.+.++.+ .+.
T Consensus 15 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 15 AILRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 47899999999999 99999999999999999999984 5788888776654321 000
Q ss_pred ---HHH-------------------------HHHHHHHcCCc--eeecC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 459 ---VEQ-------------------------LRTHARRLQVP--IFEKG--YEKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 459 ---~eq-------------------------L~~~~~~l~v~--~~~~~--~~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
... +..+.+.++++ +.... .........+.+|++|+..+|+++|+|+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEP 172 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 000 00011111221 00111 13455666789999999999999999999
Q ss_pred CCCCChHHHHHHHHHH
Q 008816 507 GRMQVIIEYYLFLLHI 522 (552)
Q Consensus 507 Gr~~~~~~lm~eL~kl 522 (552)
+...+.. ....+.++
T Consensus 173 t~~LD~~-~~~~l~~~ 187 (248)
T PRK09580 173 DSGLDID-ALKIVADG 187 (248)
T ss_pred CccCCHH-HHHHHHHH
Confidence 9665554 34444443
No 233
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=1.7e-10 Score=114.69 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=74.2
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc--------------------hHHHHH--
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--------------------GAVEQL-- 462 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~--------------------ga~eqL-- 462 (552)
+++|.+.+|+ +++|+|+||+||||+++.|++.+.+.+|+|.+.+.++... ...+.+
T Consensus 17 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGE--RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 6899999999 9999999999999999999999999999888766542110 001111
Q ss_pred ----------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 463 ----------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 463 ----------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|+|....+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1111222222100 0112333445578899999999999999999977665443
No 234
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=1.4e-10 Score=119.19 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=77.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC------------c--ch---------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------R--SG--------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~------------r--~g--------- 457 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++.+.+..|.|.+.+.++. | .+
T Consensus 25 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 48999999999999 99999999999999999999999998888877654321 0 00
Q ss_pred -----HHHHHH------------------HHHHHcCCc--eeec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 458 -----AVEQLR------------------THARRLQVP--IFEK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 458 -----a~eqL~------------------~~~~~l~v~--~~~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
..+.+. .+.+.++++ +... .......+..+.+|++|+..+|+++|+|+|+...+
T Consensus 103 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 182 (289)
T PRK13645 103 LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182 (289)
T ss_pred hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 001110 011122331 1111 11233445558899999999999999999997766
Q ss_pred hHHH
Q 008816 512 IIEY 515 (552)
Q Consensus 512 ~~~l 515 (552)
....
T Consensus 183 ~~~~ 186 (289)
T PRK13645 183 PKGE 186 (289)
T ss_pred HHHH
Confidence 5443
No 235
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.19 E-value=9.2e-11 Score=134.66 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=86.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------ 455 (552)
..+|+++++.+++|+ .++|+|++||||||+++.|++++.+..|+|.+.+.|...
T Consensus 487 ~~iL~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI 564 (708)
T TIGR01193 487 SNILSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564 (708)
T ss_pred CcceeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHH
Confidence 358999999999999 999999999999999999999999999999988766310
Q ss_pred ---------ch-HHHHHHHHHHHcC-------------CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 456 ---------SG-AVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 456 ---------~g-a~eqL~~~~~~l~-------------v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
.. ..+++...++..+ ..+-+.+......+..|.+|++|+..+|+++|+|||+...|.
T Consensus 565 ~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~ 644 (708)
T TIGR01193 565 LENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644 (708)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCH
Confidence 10 1222332232222 122233445677788899999999999999999999987776
Q ss_pred HHHH
Q 008816 513 IEYY 516 (552)
Q Consensus 513 ~~lm 516 (552)
....
T Consensus 645 ~te~ 648 (708)
T TIGR01193 645 ITEK 648 (708)
T ss_pred HHHH
Confidence 5433
No 236
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.19 E-value=2.5e-10 Score=111.39 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=77.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------H
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA---------------------V 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga---------------------~ 459 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++++.+..|.|.+.+.++..... .
T Consensus 22 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 99 (207)
T cd03369 22 PVLKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR 99 (207)
T ss_pred ccccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHH
Confidence 47899999999999 999999999999999999999999999999887665421100 0
Q ss_pred HHHHH--------HHHHcCCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 EQLRT--------HARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 eqL~~--------~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+.. ....+. +-.........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 100 ~~l~~~~~~~~~~~~~~l~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 160 (207)
T cd03369 100 SNLDPFDEYSDEEIYGALR--VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160 (207)
T ss_pred HHhcccCCCCHHHHHHHhh--ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 10100 000011 001112234455568899999999999999999997665543
No 237
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=2e-10 Score=117.74 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=77.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHH---------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV--------------------- 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~--------------------- 459 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+.+.++......
T Consensus 24 ~vl~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 24 LALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 48999999999999 9999999999999999999999999999998876654211000
Q ss_pred ---HHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 ---EQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 ---eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+ ..+.+.+++.-+. ........+..+.+|++|+..+|+++|+|+|....+...
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~ 179 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSG 179 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 000 0001111221100 011223334447899999999999999999997766544
No 238
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2.8e-10 Score=114.52 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=76.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+|||||++.|++.+.+ ..|+|.+.+.++..
T Consensus 21 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (254)
T PRK14273 21 KALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98 (254)
T ss_pred eeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence 48899999999999 9999999999999999999999886 37888876544210
Q ss_pred ---chHHHHHHH-------------------HHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRT-------------------HARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~-------------------~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+.. ..+.+++. .. .........+..+.+|++|+..+|+++|+|||+
T Consensus 99 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt 178 (254)
T PRK14273 99 PFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178 (254)
T ss_pred cccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 001111110 01111210 00 011223445556889999999999999999999
Q ss_pred CCCChHHH
Q 008816 508 RMQVIIEY 515 (552)
Q Consensus 508 r~~~~~~l 515 (552)
...+....
T Consensus 179 ~~LD~~~~ 186 (254)
T PRK14273 179 SALDPIST 186 (254)
T ss_pred cccCHHHH
Confidence 77665443
No 239
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2.5e-10 Score=116.28 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=75.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCCc-----------c--------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTFR-----------S-------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~r-----------~-------- 456 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++.+. +..|+|.+.+.++.. .
T Consensus 27 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 27 EAVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred EEEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 48999999999999 999999999999999999999876 477888876654310 0
Q ss_pred ----hHHHHHH-----------------HHHHHcCCce-----ee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 457 ----GAVEQLR-----------------THARRLQVPI-----FE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 457 ----ga~eqL~-----------------~~~~~l~v~~-----~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
...+.+. ...+.+++.. .. ........+..+.+|++|+..+|+++|+|+|+..
T Consensus 105 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~g 184 (269)
T PRK14259 105 PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSA 184 (269)
T ss_pred cchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 0111111 0111112110 00 0112344555588999999999999999999976
Q ss_pred CChHH
Q 008816 510 QVIIE 514 (552)
Q Consensus 510 ~~~~~ 514 (552)
.+...
T Consensus 185 LD~~~ 189 (269)
T PRK14259 185 LDPIS 189 (269)
T ss_pred CCHHH
Confidence 66543
No 240
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9.2e-11 Score=128.44 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=86.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC--------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------------------- 454 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~-------------------------- 454 (552)
.++.+++|.+++|+ .++|||++||||||++..|+|++.+..|.+.+.+.|..
T Consensus 335 ~~l~~l~~t~~~g~--~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTir 412 (559)
T COG4988 335 PALSDLNLTIKAGQ--LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412 (559)
T ss_pred cccCCceeEecCCc--EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHH
Confidence 68899999999999 99999999999999999999999999999998877642
Q ss_pred ------cc-hHHHHHHHHHHHcC------------CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 455 ------RS-GAVEQLRTHARRLQ------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 455 ------r~-ga~eqL~~~~~~l~------------v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
++ ...+++....+..+ ..+-+.+.+....+..|.+++||+..+++++|+|||+.+.|-+
T Consensus 413 eNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~e 490 (559)
T COG4988 413 ENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490 (559)
T ss_pred HHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHh
Confidence 11 11233433333322 1233445667788888999999999999999999999655443
No 241
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.18 E-value=3.3e-10 Score=114.59 Aligned_cols=112 Identities=15% Similarity=0.223 Sum_probs=76.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCC---------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF--------------------- 454 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~--------------------- 454 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+. +..|+|.+.+.++.
T Consensus 27 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 27 HALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred EEeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 48999999999999 999999999999999999999886 36788877654431
Q ss_pred --cchHHHHH-------------------HHHHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 455 --RSGAVEQL-------------------RTHARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 455 --r~ga~eqL-------------------~~~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
.....+.+ ..+.+.+++. .. .........+..+.+|++|+..+|+++|+|+|+
T Consensus 105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 184 (260)
T PRK10744 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC 184 (260)
T ss_pred cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 00001111 1111222321 00 111234445666889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 185 ~~LD~~~ 191 (260)
T PRK10744 185 SALDPIS 191 (260)
T ss_pred ccCCHHH
Confidence 7766544
No 242
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.18 E-value=1.5e-10 Score=112.73 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=76.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee------ecC--CcchHHH-----------H
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA------CDT--FRSGAVE-----------Q 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~------~D~--~r~ga~e-----------q 461 (552)
.++++++|.+++|+ +++|+||||+||||+++.|++.+.+..|.|.+.+ .+. +.....+ .
T Consensus 19 ~il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~ 96 (204)
T cd03250 19 FTLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEER 96 (204)
T ss_pred ceeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHH
Confidence 48899999999999 9999999999999999999999999988876532 221 1000011 1
Q ss_pred HHHHHHHcCCc-------------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 462 LRTHARRLQVP-------------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 462 L~~~~~~l~v~-------------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.....+.+++. +.............+.+|++|+..+|+++|+|+|+...+..
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 161 (204)
T cd03250 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161 (204)
T ss_pred HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 11111111110 01112345566777899999999999999999999766554
No 243
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=3e-10 Score=114.21 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=76.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCC--c------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF--R------------------ 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~--r------------------ 455 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++. +
T Consensus 18 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 18 HVIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 47899999999999 9999999999999999999999876 3788887655431 0
Q ss_pred ----chHHHHHH--------------------HHHHHcCCce-----ee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Q 008816 456 ----SGAVEQLR--------------------THARRLQVPI-----FE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDT 505 (552)
Q Consensus 456 ----~ga~eqL~--------------------~~~~~l~v~~-----~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDt 505 (552)
....+.+. .+.+.+++.- .. ........+..+.+|++|+..+|+++|+|+
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 00111111 1111122210 00 011233344558899999999999999999
Q ss_pred CCCCCChHH
Q 008816 506 AGRMQVIIE 514 (552)
Q Consensus 506 pGr~~~~~~ 514 (552)
|+...+...
T Consensus 176 P~~~LD~~~ 184 (253)
T PRK14267 176 PTANIDPVG 184 (253)
T ss_pred CCccCCHHH
Confidence 997766543
No 244
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.18 E-value=2.4e-10 Score=108.32 Aligned_cols=131 Identities=17% Similarity=0.107 Sum_probs=88.5
Q ss_pred HHHHhCC-CCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHH-------
Q 008816 390 LVRILTP-RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ------- 461 (552)
Q Consensus 390 L~~il~~-~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eq------- 461 (552)
+.+.++. ...+.||+++++.+..|+ .++||||+|+||||++..||++-.+++|.|.+.+.+.++...-..
T Consensus 12 l~ktvg~~~~~l~IL~~V~L~v~~Ge--~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~ 89 (228)
T COG4181 12 LSKTVGQGEGELSILKGVELVVKRGE--TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARH 89 (228)
T ss_pred hhhhhcCCCcceeEeecceEEecCCc--eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccc
Confidence 3344442 356789999999999999 999999999999999999999999999999999988764321110
Q ss_pred -------------------------------------HHHHHHHcCCceeecCC--CCCHHHHHHHHHHHHHhCCCCEEE
Q 008816 462 -------------------------------------LRTHARRLQVPIFEKGY--EKDPAIVAKEAIQEATRNGSDVVL 502 (552)
Q Consensus 462 -------------------------------------L~~~~~~l~v~~~~~~~--~~dp~~iar~aIa~a~~~~~DvVI 502 (552)
-+.+...+|+.-.-..| ...-.+-.|.||++|....|+++|
T Consensus 90 vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 90 VGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEe
Confidence 11111122211100001 111223337999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHh
Q 008816 503 VDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 503 IDtpGr~~~~~~lm~eL~kl~ 523 (552)
-|+|+-+.+ ..--+.+..+.
T Consensus 170 ADEPTGNLD-~~Tg~~iaDLl 189 (228)
T COG4181 170 ADEPTGNLD-RATGDKIADLL 189 (228)
T ss_pred ccCCCCCcc-hhHHHHHHHHH
Confidence 999985544 34444444444
No 245
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.7e-10 Score=117.90 Aligned_cols=122 Identities=19% Similarity=0.187 Sum_probs=80.9
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee---cCCcchHHH----------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC---DTFRSGAVE---------------- 460 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~---D~~r~ga~e---------------- 460 (552)
..+++||++.++.|+ .++++|||||||||++++|||+..++.|+|.+.+. |.-+....+
T Consensus 15 ~~a~~di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hm 92 (345)
T COG1118 15 FGALDDISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHM 92 (345)
T ss_pred ccccccceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccc
Confidence 445678999999999 99999999999999999999999999999999988 653211000
Q ss_pred --------------------HHHH----HHHHcCCceeecCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh--
Q 008816 461 --------------------QLRT----HARRLQVPIFEKGY--EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI-- 512 (552)
Q Consensus 461 --------------------qL~~----~~~~l~v~~~~~~~--~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~-- 512 (552)
..+. +.+.+++.-+...| ..+..+..|.|+++|+.-.|+++|+|||-...+.
T Consensus 93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~v 172 (345)
T COG1118 93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172 (345)
T ss_pred hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHH
Confidence 0000 00111111111111 1222334489999999999999999999754433
Q ss_pred -HHHHHHHHHHh
Q 008816 513 -IEYYLFLLHIY 523 (552)
Q Consensus 513 -~~lm~eL~kl~ 523 (552)
.++-++|.++.
T Consensus 173 r~~lr~wLr~~~ 184 (345)
T COG1118 173 RKELRRWLRKLH 184 (345)
T ss_pred HHHHHHHHHHHH
Confidence 23444444544
No 246
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.17 E-value=1.5e-10 Score=132.66 Aligned_cols=114 Identities=20% Similarity=0.143 Sum_probs=85.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------ 455 (552)
..+|++++|.+++|+ .++|+|+||+||||+++.|++++.+..|.|.+.+.|...
T Consensus 478 ~~vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI 555 (694)
T TIGR03375 478 TPALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTL 555 (694)
T ss_pred ccceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhH
Confidence 358999999999999 999999999999999999999999999999988765421
Q ss_pred --------c-hHHHHHHHHHHHcCC-------------ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 456 --------S-GAVEQLRTHARRLQV-------------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 456 --------~-ga~eqL~~~~~~l~v-------------~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+ ...+++...++..++ .+-+.+......+..|.+|++|+..+|+++|+|||+...|..
T Consensus 556 ~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~ 635 (694)
T TIGR03375 556 RDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635 (694)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 1 112222222222211 122334456667788999999999999999999999877665
Q ss_pred HH
Q 008816 514 EY 515 (552)
Q Consensus 514 ~l 515 (552)
..
T Consensus 636 te 637 (694)
T TIGR03375 636 SE 637 (694)
T ss_pred HH
Confidence 43
No 247
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.17 E-value=1.4e-10 Score=130.39 Aligned_cols=115 Identities=20% Similarity=0.201 Sum_probs=84.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------ 455 (552)
..+|+++++.+++|+ .++|+|+||+||||+++.|++++.+..|.|.+.+.|...
T Consensus 348 ~~iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti 425 (588)
T PRK13657 348 RQGVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425 (588)
T ss_pred CceecceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccH
Confidence 358999999999999 999999999999999999999999999999887765321
Q ss_pred --------ch-HHHHHHHHHHHcC-----------Cc--eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 456 --------SG-AVEQLRTHARRLQ-----------VP--IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 456 --------~g-a~eqL~~~~~~l~-----------v~--~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+. ..+.+....+..+ .. +-+.+......+..|.+|++|+..+++++|+|||+...|..
T Consensus 426 ~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~ 505 (588)
T PRK13657 426 EDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505 (588)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 00 0111221112111 11 22223345667788999999999999999999999877664
Q ss_pred HHH
Q 008816 514 EYY 516 (552)
Q Consensus 514 ~lm 516 (552)
..-
T Consensus 506 t~~ 508 (588)
T PRK13657 506 TEA 508 (588)
T ss_pred HHH
Confidence 433
No 248
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.17 E-value=2.4e-10 Score=115.70 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=44.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC---CceEEEeeecC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDT 453 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~---ggkVll~~~D~ 453 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+. +|.|.+.+.++
T Consensus 18 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 18 QALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred EEEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 47899999999999 99999999999999999999998765 37887766543
No 249
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.17 E-value=1.7e-10 Score=131.04 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=44.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
.+|++++|.+.+|+ +++|+||||||||||+++|++.+.+..|.|.+.+
T Consensus 17 ~il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 17 PLLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred eeEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 58999999999999 9999999999999999999999999999987643
No 250
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.17 E-value=1.2e-10 Score=133.79 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=84.3
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------ 455 (552)
..+|++++|.+++|+ +++||||||+||||+++.|++++.+.+|+|.+.+.|+..
T Consensus 494 ~~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTI 571 (711)
T TIGR00958 494 VPVLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSV 571 (711)
T ss_pred CccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCH
Confidence 458999999999999 999999999999999999999999999999987765321
Q ss_pred --------c-hHHHHHHHHHHHcCC-------------ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 456 --------S-GAVEQLRTHARRLQV-------------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 456 --------~-ga~eqL~~~~~~l~v-------------~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
. ...+++...++..++ .+-+.+......+..|.+|++|+..+++++|+|||+...|.+
T Consensus 572 reNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~ 651 (711)
T TIGR00958 572 RENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651 (711)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHH
Confidence 0 011223222222221 122233445667788999999999999999999999776653
No 251
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.17 E-value=3.4e-10 Score=114.82 Aligned_cols=111 Identities=19% Similarity=0.123 Sum_probs=75.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE-----------EeeecCCcch------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTFRSG------------ 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl-----------l~~~D~~r~g------------ 457 (552)
.+++++++ +.+|+ +++|+||||+||||+++.|++++.+..|+|. +.+.+.....
T Consensus 15 ~~l~~i~~-i~~Ge--~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLPV-PREGQ--VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCCC-CCCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 46788884 88999 9999999999999999999999999999995 4344321100
Q ss_pred ------------------------HHHHHHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 458 ------------------------AVEQLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 458 ------------------------a~eqL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
..+....+.+.+++.-.. ...........+.+|++++..+++++|+|+|+...+
T Consensus 92 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD 171 (255)
T cd03236 92 KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171 (255)
T ss_pred ecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 000111122233332111 112234455568899999999999999999998776
Q ss_pred hHH
Q 008816 512 IIE 514 (552)
Q Consensus 512 ~~~ 514 (552)
...
T Consensus 172 ~~~ 174 (255)
T cd03236 172 IKQ 174 (255)
T ss_pred HHH
Confidence 654
No 252
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=3.6e-10 Score=116.23 Aligned_cols=112 Identities=17% Similarity=0.217 Sum_probs=77.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++.+. +..|+|.+.+.++.+
T Consensus 53 ~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 53 QALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred eeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 48899999999999 999999999999999999999886 467888775544210
Q ss_pred ---chHHHHHH-----------------HHHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 456 ---SGAVEQLR-----------------THARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 456 ---~ga~eqL~-----------------~~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
....+.+. .+.+.+++. .. .........+..+.+|++|+..+++++|+|||...
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~ 210 (285)
T PRK14254 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASA 210 (285)
T ss_pred cCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 01111111 112222331 00 11223445566689999999999999999999977
Q ss_pred CChHH
Q 008816 510 QVIIE 514 (552)
Q Consensus 510 ~~~~~ 514 (552)
.+...
T Consensus 211 LD~~~ 215 (285)
T PRK14254 211 LDPVA 215 (285)
T ss_pred CCHHH
Confidence 66543
No 253
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.16 E-value=2.8e-10 Score=125.63 Aligned_cols=112 Identities=19% Similarity=0.140 Sum_probs=78.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc----------hH------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------GA------------ 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------ga------------ 458 (552)
.+|++++|.+.+|+ +++|+|||||||||+++.|++.+.+..|.|.+.+.++... +.
T Consensus 18 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK10762 18 KALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT 95 (501)
T ss_pred EEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence 48899999999999 9999999999999999999999999999998876554211 00
Q ss_pred -HHH----------------------HHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 -VEQ----------------------LRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 -~eq----------------------L~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+. ...+.+.+++.-... ....+..+..+.+|++|+..+|+++|+|||+...|..
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 010 011112222221100 1122334445889999999999999999999766654
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 176 ~ 176 (501)
T PRK10762 176 E 176 (501)
T ss_pred H
Confidence 3
No 254
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=2.7e-10 Score=119.55 Aligned_cols=114 Identities=17% Similarity=0.108 Sum_probs=78.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh----hCCceEEEeeecCCcch------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL----QHKVSVMMAACDTFRSG------------------ 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~----~~ggkVll~~~D~~r~g------------------ 457 (552)
..++++++|.+.+|+ +++|+|+||+||||+++.|++++. +..|+|.+.+.|+.+..
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~ 97 (330)
T PRK15093 20 VKAVDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred EEEEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 458999999999999 999999999999999999999986 36788877665532100
Q ss_pred ----------HHHHHH------------------------HHHHHcCCcee-----ecCCCCCHHHHHHHHHHHHHhCCC
Q 008816 458 ----------AVEQLR------------------------THARRLQVPIF-----EKGYEKDPAIVAKEAIQEATRNGS 498 (552)
Q Consensus 458 ----------a~eqL~------------------------~~~~~l~v~~~-----~~~~~~dp~~iar~aIa~a~~~~~ 498 (552)
..+++. .+.+.+++.-. ............|.+|++|+..+|
T Consensus 98 ~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P 177 (330)
T PRK15093 98 PQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQP 177 (330)
T ss_pred cchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCC
Confidence 011111 11122233210 011123344555899999999999
Q ss_pred CEEEEeCCCCCCChHHH
Q 008816 499 DVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 499 DvVIIDtpGr~~~~~~l 515 (552)
+++|+|||+...|....
T Consensus 178 ~llilDEPts~LD~~~~ 194 (330)
T PRK15093 178 RLLIADEPTNAMEPTTQ 194 (330)
T ss_pred CEEEEeCCCCcCCHHHH
Confidence 99999999987765443
No 255
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=4.7e-10 Score=113.99 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=75.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+. +..|+|.+.+.++..
T Consensus 35 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 35 RAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred eeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 48999999999999 999999999999999999999764 467888776544310
Q ss_pred ---chHHHHHHH-------------------HHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRT-------------------HARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~-------------------~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+.. ....+++. .. ............+.+|++|+..+|+++|+|+|+
T Consensus 113 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 192 (268)
T PRK14248 113 PFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192 (268)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 001111110 00111111 00 011223445556889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 193 ~~LD~~~ 199 (268)
T PRK14248 193 SALDPIS 199 (268)
T ss_pred cccCHHH
Confidence 7665543
No 256
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=4e-10 Score=113.93 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=77.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.+
T Consensus 21 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 21 KAIEGISMDIYRNK--VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred EeecceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 47899999999999 9999999999999999999998874 36778776544310
Q ss_pred ---chHHHHH-------------------HHHHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQL-------------------RTHARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL-------------------~~~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+ ....+.+++. .. ............+.+|++|+..+++++|+|+|+
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 178 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0001111 1111122221 00 111234445666899999999999999999999
Q ss_pred CCCChHHHH
Q 008816 508 RMQVIIEYY 516 (552)
Q Consensus 508 r~~~~~~lm 516 (552)
...+.....
T Consensus 179 ~~LD~~~~~ 187 (259)
T PRK14260 179 SALDPIATM 187 (259)
T ss_pred ccCCHHHHH
Confidence 877654433
No 257
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=4.5e-10 Score=112.80 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=76.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+||||++..|++.+. +..|+|.+.+.++..
T Consensus 18 ~~l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 18 EALHGISLDFEEKE--LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 58899999999999 999999999999999999999886 367888877655310
Q ss_pred ---chHHHHHH-------------------HHHHHcCCc-----e-eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLR-------------------THARRLQVP-----I-FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~-------------------~~~~~l~v~-----~-~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+. ...+.+++. . -.........+..+.+|++|+..+|+++|+|+|.
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~ 175 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 00111111 111112221 0 0011123344555889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 176 ~~LD~~~ 182 (251)
T PRK14251 176 SALDPIS 182 (251)
T ss_pred ccCCHHH
Confidence 7766543
No 258
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.16 E-value=3.2e-10 Score=126.49 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=85.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.+|++++|.+++|+ .++|+|+||+||||++..|++++.+..|.|.+.+.|....
T Consensus 337 ~~l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 414 (547)
T PRK10522 337 FSVGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLG 414 (547)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhc
Confidence 48999999999999 9999999999999999999999999999999887764311
Q ss_pred -----hHHHHHHHHHHHcCCcee----e---cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 457 -----GAVEQLRTHARRLQVPIF----E---KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 457 -----ga~eqL~~~~~~l~v~~~----~---~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
...+.+..+.+.+++... . .+......+..|.+|++|+..+++++|+|||+...|.+..
T Consensus 415 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~ 485 (547)
T PRK10522 415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFR 485 (547)
T ss_pred cccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 011223333444443321 0 1234566778899999999999999999999987766543
No 259
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=2.8e-10 Score=111.64 Aligned_cols=115 Identities=17% Similarity=0.099 Sum_probs=77.5
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------------chH
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------------SGA 458 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------------~ga 458 (552)
+++|.+.+ + +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.. ...
T Consensus 16 ~vsl~i~~-e--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-E--VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-e--eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 88999988 8 999999999999999999999999999988876544210 001
Q ss_pred HHH----------------HHHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHH
Q 008816 459 VEQ----------------LRTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLL 520 (552)
Q Consensus 459 ~eq----------------L~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~ 520 (552)
.+. ...+.+.+++.-. . ...........+.+|++|+..+|+++|+|+|+...+... .+.+.
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~-~~~l~ 171 (214)
T cd03297 93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL-RLQLL 171 (214)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH-HHHHH
Confidence 111 1112223333211 0 112234455568899999999999999999997665543 44444
Q ss_pred HHh
Q 008816 521 HIY 523 (552)
Q Consensus 521 kl~ 523 (552)
+++
T Consensus 172 ~~l 174 (214)
T cd03297 172 PEL 174 (214)
T ss_pred HHH
Confidence 443
No 260
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=4.2e-10 Score=113.11 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=77.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|.|.+.+.++.+
T Consensus 18 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 18 QALNDINLPIYENK--ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred eeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 47899999999999 9999999999999999999998764 57888876655321
Q ss_pred ---chHHHHHHH-------------------HHHHcCCc-----eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRT-------------------HARRLQVP-----IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~-------------------~~~~l~v~-----~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+.. +.+.+++. ... ........+..+.+|++|+..+++++|+|+|.
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 175 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 000111110 11112221 000 11233445556889999999999999999999
Q ss_pred CCCChHHHH
Q 008816 508 RMQVIIEYY 516 (552)
Q Consensus 508 r~~~~~~lm 516 (552)
...+.....
T Consensus 176 ~~LD~~~~~ 184 (251)
T PRK14270 176 SALDPISTL 184 (251)
T ss_pred ccCCHHHHH
Confidence 877664433
No 261
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.16 E-value=2.1e-10 Score=128.23 Aligned_cols=116 Identities=19% Similarity=0.192 Sum_probs=86.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC--------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------------------- 454 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~-------------------------- 454 (552)
.+|+++++.+++|+ .++|+|+||+||||+++.|++++.+..|+|.+.+.|.-
T Consensus 346 ~il~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 346 PALDSISLVIEPGE--TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred ccccCeeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 48999999999999 99999999999999999999999999999998775521
Q ss_pred ------cc--hHHHHHHHHHHHcCC-------------ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 455 ------RS--GAVEQLRTHARRLQV-------------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 455 ------r~--ga~eqL~~~~~~l~v-------------~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+. ...+++....+..++ .+-+.+......+..|.+|+||+..+++++|+|||+...|..
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 11 111222222222221 122334456778888999999999999999999999776665
Q ss_pred HHHHH
Q 008816 514 EYYLF 518 (552)
Q Consensus 514 ~lm~e 518 (552)
.....
T Consensus 504 ~~~~i 508 (571)
T TIGR02203 504 SERLV 508 (571)
T ss_pred HHHHH
Confidence 43333
No 262
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.3e-10 Score=126.06 Aligned_cols=122 Identities=19% Similarity=0.154 Sum_probs=88.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------- 457 (552)
..+|++++|++++|+ .++|+|+|||||||+++.|-+++. ..|+|++.+.|+.+..
T Consensus 365 ~~iL~gvsf~I~kGe--kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTI 441 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGE--KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTI 441 (591)
T ss_pred CceecceeEEecCCC--EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhH
Confidence 348999999999999 999999999999999999999999 8899999999864211
Q ss_pred -----------HHHHHHHHHHHcCCc----eeecC---------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 458 -----------AVEQLRTHARRLQVP----IFEKG---------YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 458 -----------a~eqL~~~~~~l~v~----~~~~~---------~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
..+.....|++.++. -++.+ ......+..+.++++|...+++++++|+|+...|.+
T Consensus 442 l~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~ 521 (591)
T KOG0057|consen 442 LYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSE 521 (591)
T ss_pred HHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchh
Confidence 112222234443332 11122 223334556899999999999999999999877766
Q ss_pred HHHHHHHHHhh
Q 008816 514 EYYLFLLHIYL 524 (552)
Q Consensus 514 ~lm~eL~kl~~ 524 (552)
...+.+..+..
T Consensus 522 TE~~i~~~i~~ 532 (591)
T KOG0057|consen 522 TEREILDMIMD 532 (591)
T ss_pred hHHHHHHHHHH
Confidence 55555555544
No 263
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.15 E-value=1.9e-10 Score=128.82 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=86.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC-------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------------------- 454 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~------------------------- 454 (552)
..++++++|.+++|+ .++||||+||||||++..|.+++.+..|+|.+.+.|+.
T Consensus 342 ~~vl~~is~~i~~Ge--~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI 419 (567)
T COG1132 342 KPVLKDISFSIEPGE--KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTI 419 (567)
T ss_pred CccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccH
Confidence 458999999999999 99999999999999999999999999999999666642
Q ss_pred -------cc-hHHHHHHHHHHHc-------------CCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 455 -------RS-GAVEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 455 -------r~-ga~eqL~~~~~~l-------------~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
++ ...+++..-++.. +..+-+.|......+..|.+|++|+..+++++|+|+|+...|..
T Consensus 420 ~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~ 499 (567)
T COG1132 420 RENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE 499 (567)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence 11 1112332222221 11122234456677888999999999999999999999877765
Q ss_pred HH
Q 008816 514 EY 515 (552)
Q Consensus 514 ~l 515 (552)
..
T Consensus 500 tE 501 (567)
T COG1132 500 TE 501 (567)
T ss_pred hH
Confidence 53
No 264
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.15 E-value=1.9e-10 Score=129.16 Aligned_cols=114 Identities=15% Similarity=0.108 Sum_probs=86.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------- 455 (552)
.+|++++|.+++|+ +++|+||||+||||+++.|++++.+..|+|.+.+.|...
T Consensus 354 ~il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 431 (574)
T PRK11160 354 PVLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431 (574)
T ss_pred cceecceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence 58999999999999 999999999999999999999999999999988776421
Q ss_pred -------c-hHHHHHHHHHHHcCCce------------eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 456 -------S-GAVEQLRTHARRLQVPI------------FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 456 -------~-ga~eqL~~~~~~l~v~~------------~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
+ ...+++....+..++.- -+.+......+..|.+|++|+..+++++|+|||+...|....
T Consensus 432 ~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 432 DNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred HHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 0 11123333333433321 112334566777799999999999999999999987766543
Q ss_pred H
Q 008816 516 Y 516 (552)
Q Consensus 516 m 516 (552)
.
T Consensus 512 ~ 512 (574)
T PRK11160 512 R 512 (574)
T ss_pred H
Confidence 3
No 265
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.15 E-value=2.5e-10 Score=127.32 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=82.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc-----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------------------- 456 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------------------- 456 (552)
..++++++|.+++|+ .++|+|+||+||||+++.|++++.+..|+|.+.+.|....
T Consensus 331 ~~~l~~~~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti 408 (544)
T TIGR01842 331 KPTLRGISFRLQAGE--ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTV 408 (544)
T ss_pred ccccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccH
Confidence 358999999999999 9999999999999999999999999999998876553210
Q ss_pred ----------hHHHHHHHHHH---------Hc--CCc--eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 457 ----------GAVEQLRTHAR---------RL--QVP--IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 457 ----------ga~eqL~~~~~---------~l--~v~--~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
...+++....+ .+ |.. +-+.+......+..|.+|++|+..+|+++|+|||+...|..
T Consensus 409 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~ 488 (544)
T TIGR01842 409 AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488 (544)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHH
Confidence 01112211111 11 111 11223345667777999999999999999999999776654
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 489 ~ 489 (544)
T TIGR01842 489 G 489 (544)
T ss_pred H
Confidence 3
No 266
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.15 E-value=3.3e-10 Score=114.50 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=78.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA---------------------- 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga---------------------- 458 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.....
T Consensus 35 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~ 112 (257)
T cd03288 35 PVLKHVKAYIKPGQ--KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIR 112 (257)
T ss_pred cceeEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHH
Confidence 48999999999999 999999999999999999999999999999886654321000
Q ss_pred ----------HHHHHHHHHHcCC-----------ce--eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 ----------VEQLRTHARRLQV-----------PI--FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 ----------~eqL~~~~~~l~v-----------~~--~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+....+..++ .- -............+.+|++|+..+|+++|+|+|+...+...
T Consensus 113 ~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~ 191 (257)
T cd03288 113 FNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191 (257)
T ss_pred HhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 0000000011111 00 00112344456668899999999999999999998776654
No 267
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=4.8e-10 Score=113.30 Aligned_cols=112 Identities=13% Similarity=0.210 Sum_probs=76.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh--h---CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~--~---~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++.+. + ..|.|.+.+.++..
T Consensus 26 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 26 HALKNINLSIPENE--VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred eeEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 58999999999999 999999999999999999999886 3 47888776554310
Q ss_pred ---chHHHHHH-------------------HHHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLR-------------------THARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~-------------------~~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+. .+.+.+++. .. .........+..+.+|++++..+|+++|+|+|+
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 183 (259)
T PRK14274 104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT 183 (259)
T ss_pred ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 00011110 011122221 00 111223445566889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 184 ~~LD~~~ 190 (259)
T PRK14274 184 SALDPVS 190 (259)
T ss_pred ccCCHHH
Confidence 7766543
No 268
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.15 E-value=4e-10 Score=113.37 Aligned_cols=49 Identities=33% Similarity=0.325 Sum_probs=43.5
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
+|++++|.+..|+ +++|+|+||+||||+++.|++.+. ..|.|.+.+.++
T Consensus 11 ~l~~vsl~i~~Ge--i~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i 59 (248)
T PRK03695 11 RLGPLSAEVRAGE--ILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPL 59 (248)
T ss_pred eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEec
Confidence 6789999999999 999999999999999999999875 478888876654
No 269
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.15 E-value=2.9e-10 Score=125.16 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=78.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc----------hH------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------GA------------ 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------ga------------ 458 (552)
.+|++++|.+.+|+ +++|+|+||||||||++.|++.+.+..|.|.+.+.++... +.
T Consensus 12 ~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 12 KALDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred EeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 48899999999999 9999999999999999999999999999998876543210 00
Q ss_pred -HH---------------------HHHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 -VE---------------------QLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 -~e---------------------qL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+ ....+.+.+++.... ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~ 169 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKE 169 (491)
T ss_pred HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Confidence 00 011111222322110 111233345558899999999999999999997766543
No 270
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.15 E-value=5.1e-10 Score=110.09 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=78.5
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC-----------c--c----------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------R--S---------- 456 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~-----------r--~---------- 456 (552)
..++++++|.+.+|+ +++|+|+||+||||++..|++.+.+..|.|.+.+.++. | .
T Consensus 14 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQ--LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 458999999999999 99999999999999999999999888898887554321 0 0
Q ss_pred --hHHHHH-----------HHHHHHcCCc-ee------------ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 457 --GAVEQL-----------RTHARRLQVP-IF------------EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 457 --ga~eqL-----------~~~~~~l~v~-~~------------~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
...+.+ ....+.+++. .+ .........+..+.+|++|+..+|+++|+|+|+...
T Consensus 92 ~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 171 (218)
T cd03290 92 NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSAL 171 (218)
T ss_pred cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccc
Confidence 001111 1111222211 00 011234556666899999999999999999999766
Q ss_pred ChHH
Q 008816 511 VIIE 514 (552)
Q Consensus 511 ~~~~ 514 (552)
+...
T Consensus 172 D~~~ 175 (218)
T cd03290 172 DIHL 175 (218)
T ss_pred CHHH
Confidence 6543
No 271
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.7e-10 Score=114.15 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=76.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++..
T Consensus 26 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 26 QALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 47899999999999 9999999999999999999998864 57888775544210
Q ss_pred ---chHHHHHH------------------HHHHHcCCc-----eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 456 ---SGAVEQLR------------------THARRLQVP-----IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 456 ---~ga~eqL~------------------~~~~~l~v~-----~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
....+.+. .+.+.+++. ... ........+..+.+|++|+..+|+++|+|+|+.
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 00011111 111122221 000 111233455568999999999999999999997
Q ss_pred CCChHHH
Q 008816 509 MQVIIEY 515 (552)
Q Consensus 509 ~~~~~~l 515 (552)
..+....
T Consensus 184 ~LD~~~~ 190 (258)
T PRK14268 184 ALDPIST 190 (258)
T ss_pred ccCHHHH
Confidence 7665443
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.6e-10 Score=125.03 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=77.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc----------hH------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------GA------------ 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------ga------------ 458 (552)
.++++++|.+..|+ +++|+||||||||||++.|++.+.+..|+|.+.+.++... +.
T Consensus 19 ~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 96 (510)
T PRK09700 19 HALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELT 96 (510)
T ss_pred EEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCc
Confidence 48899999999999 9999999999999999999999999999998876553211 00
Q ss_pred -HHHH-------------------------HHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 459 -VEQL-------------------------RTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 459 -~eqL-------------------------~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
.+.+ ..+.+.+++.-... .......+..|.+|++|+..+|+++|+|||+...
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~L 176 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 0100 01111122221100 0122333444889999999999999999999766
Q ss_pred ChHH
Q 008816 511 VIIE 514 (552)
Q Consensus 511 ~~~~ 514 (552)
|...
T Consensus 177 D~~~ 180 (510)
T PRK09700 177 TNKE 180 (510)
T ss_pred CHHH
Confidence 5543
No 273
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.15 E-value=3e-10 Score=120.38 Aligned_cols=108 Identities=15% Similarity=0.067 Sum_probs=75.5
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------------chH
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------------SGA 458 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------------~ga 458 (552)
+++|.+.+|+ +++|+||||+||||+++.|++++.+..|+|.+.+.++.. ...
T Consensus 15 ~isl~i~~Ge--i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQG--VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 7999999999 999999999999999999999999999998876654310 001
Q ss_pred HHHH----------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 VEQL----------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 ~eqL----------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+ ..+.+.+++.-+. ........+..|.+|++|+..+|+++|+|+|....+...
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~ 166 (354)
T TIGR02142 93 RGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPR 166 (354)
T ss_pred HHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 1111 1122223332111 111234445558999999999999999999997766644
No 274
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.14 E-value=1.4e-10 Score=127.25 Aligned_cols=124 Identities=18% Similarity=0.112 Sum_probs=86.8
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC------------------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------------------ 454 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~------------------------ 454 (552)
.+.++++|+|.+.+|+ +++|||.+||||||+++.|++++.+.+|.|.+.+.|+-
T Consensus 303 ~~~Av~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SL 380 (539)
T COG1123 303 EVKAVDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380 (539)
T ss_pred ceeeeeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCccccc
Confidence 4678999999999999 99999999999999999999999999999999887610
Q ss_pred --cchHHH-------------------HHHHHHHHcCCce-e--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 455 --RSGAVE-------------------QLRTHARRLQVPI-F--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 455 --r~ga~e-------------------qL~~~~~~l~v~~-~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
|..-.+ .+....+..+++- + .......-.+..|.+|++|+..+|.+||.|||....
T Consensus 381 nPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaL 460 (539)
T COG1123 381 NPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460 (539)
T ss_pred CccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCcccc
Confidence 000000 0111112223331 0 111122334455899999999999999999999887
Q ss_pred ChHHHHHHHHHHhh
Q 008816 511 VIIEYYLFLLHIYL 524 (552)
Q Consensus 511 ~~~~lm~eL~kl~~ 524 (552)
|..-..+.+.-|..
T Consensus 461 Dvsvqa~VlnLl~~ 474 (539)
T COG1123 461 DVSVQAQVLNLLKD 474 (539)
T ss_pred CHHHHHHHHHHHHH
Confidence 77655555554443
No 275
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.14 E-value=2.4e-10 Score=126.66 Aligned_cols=136 Identities=18% Similarity=0.107 Sum_probs=90.8
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE--------eeecCCcch---HH---------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM--------AACDTFRSG---AV--------- 459 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll--------~~~D~~r~g---a~--------- 459 (552)
-.++.++++.+.+|. .|+|||+||+||||+++.|++.+.+..|.|.. ...++.... ..
T Consensus 16 ~~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 16 RPLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred ceeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence 357889999999999 99999999999999999999999888776654 333332110 00
Q ss_pred --------HHHH-------------------------------HHHHHcCCceee-cCCCCCHHHHHHHHHHHHHhCCCC
Q 008816 460 --------EQLR-------------------------------THARRLQVPIFE-KGYEKDPAIVAKEAIQEATRNGSD 499 (552)
Q Consensus 460 --------eqL~-------------------------------~~~~~l~v~~~~-~~~~~dp~~iar~aIa~a~~~~~D 499 (552)
+.+. .....++++-.. .-.........|.++++|+..+||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pD 173 (530)
T COG0488 94 LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPD 173 (530)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 0000 000011222211 112234455668999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEecCc
Q 008816 500 VVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFRGM 540 (552)
Q Consensus 500 vVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~~~ 540 (552)
++|+|||+ +|.|...+..|......... .+++|+++-.
T Consensus 174 lLLLDEPT-NHLD~~~i~WLe~~L~~~~g--tviiVSHDR~ 211 (530)
T COG0488 174 LLLLDEPT-NHLDLESIEWLEDYLKRYPG--TVIVVSHDRY 211 (530)
T ss_pred EEEEcCCC-cccCHHHHHHHHHHHHhCCC--cEEEEeCCHH
Confidence 99999999 88899999999887642222 4444444433
No 276
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=4.4e-10 Score=114.03 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=78.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc-------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR------------------- 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r------------------- 455 (552)
..++++++|.+.+|+ +++|+|+||+|||||++.|++.+.+ ..|+|.+.+.++..
T Consensus 21 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 21 FMAVRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 358899999999999 9999999999999999999999875 57888887665421
Q ss_pred ----chHHHHHH-----------------HHHHHcCCce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 456 ----SGAVEQLR-----------------THARRLQVPI-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 456 ----~ga~eqL~-----------------~~~~~l~v~~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
....+.+. .+.+.+++.- . ............+.+|++|+..+|+++|+|+|+.
T Consensus 99 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPts 178 (261)
T PRK14263 99 NPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCS 178 (261)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 00111111 1112222210 0 0011234455668899999999999999999997
Q ss_pred CCChHH
Q 008816 509 MQVIIE 514 (552)
Q Consensus 509 ~~~~~~ 514 (552)
..+...
T Consensus 179 gLD~~~ 184 (261)
T PRK14263 179 ALDPIA 184 (261)
T ss_pred cCCHHH
Confidence 766544
No 277
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=2.5e-10 Score=129.71 Aligned_cols=120 Identities=21% Similarity=0.173 Sum_probs=80.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec--------C--C-c--chHHHH------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD--------T--F-R--SGAVEQ------ 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D--------~--~-r--~ga~eq------ 461 (552)
.+|++++|.+.+|+ +++|+||||||||||+++|++.+.++.|.|.+.+.. . + + .+.+.+
T Consensus 15 ~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~ 92 (638)
T PRK10636 15 VLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYR 92 (638)
T ss_pred eeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHH
Confidence 47899999999999 999999999999999999999999999988764321 1 0 1 011110
Q ss_pred -H-----------------------------------HHHHHHcCCc--eeec-CCCCCHHHHHHHHHHHHHhCCCCEEE
Q 008816 462 -L-----------------------------------RTHARRLQVP--IFEK-GYEKDPAIVAKEAIQEATRNGSDVVL 502 (552)
Q Consensus 462 -L-----------------------------------~~~~~~l~v~--~~~~-~~~~dp~~iar~aIa~a~~~~~DvVI 502 (552)
+ ..+...+|+. .... ....+.....|.+|++++..+||++|
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLL 172 (638)
T PRK10636 93 QLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL 172 (638)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEE
Confidence 0 0011112321 1111 11233455558999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHh
Q 008816 503 VDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 503 IDtpGr~~~~~~lm~eL~kl~ 523 (552)
+|+|+. +.|......|..+.
T Consensus 173 LDEPtn-~LD~~~~~~L~~~L 192 (638)
T PRK10636 173 LDEPTN-HLDLDAVIWLEKWL 192 (638)
T ss_pred EcCCCC-cCCHHHHHHHHHHH
Confidence 999995 55555555665554
No 278
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.14 E-value=2.8e-10 Score=122.33 Aligned_cols=135 Identities=14% Similarity=0.136 Sum_probs=96.3
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC------------------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------------------ 454 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~------------------------ 454 (552)
.+-+.++|+|.+..|+ +.+++|.||+|||||+.+|.+++.|+.|.|.+.+....
T Consensus 16 ~~~And~V~l~v~~Ge--IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~ 93 (501)
T COG3845 16 GVVANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93 (501)
T ss_pred CEEecCceeeeecCCc--EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccc
Confidence 4557789999999999 99999999999999999999999999999988655431
Q ss_pred --------------------cchHHHHHHHHHHHcCCceeecCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 455 --------------------RSGAVEQLRTHARRLQVPIFEKGY--EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 455 --------------------r~ga~eqL~~~~~~l~v~~~~~~~--~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
+..+...+...++++|+++-...+ ......-.|.-|-.++..+++++|+|||+....+
T Consensus 94 lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP 173 (501)
T COG3845 94 LTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173 (501)
T ss_pred cchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 123445566677777777643222 2222334466777889999999999999988777
Q ss_pred HHHHHHHHHHhhhhccccEEEEE
Q 008816 513 IEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 513 ~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
.+.-+-+.-+.....+...+.+|
T Consensus 174 ~E~~~lf~~l~~l~~~G~tIi~I 196 (501)
T COG3845 174 QEADELFEILRRLAAEGKTIIFI 196 (501)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE
Confidence 55433333333334444444444
No 279
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.14 E-value=2.5e-10 Score=122.93 Aligned_cols=140 Identities=20% Similarity=0.153 Sum_probs=98.4
Q ss_pred hCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHc--CC
Q 008816 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--QV 471 (552)
Q Consensus 394 l~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l--~v 471 (552)
..|.....++++++|.+..|+ .++||||+|+||||+++.|.+...+..|.|.+.+.|.++.. .++|..|..++ +|
T Consensus 343 ~PPg~~~pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd-~e~lG~hiGYLPQdV 419 (580)
T COG4618 343 APPGQKKPILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD-REQLGRHIGYLPQDV 419 (580)
T ss_pred cCCCCCCcceecceeEecCCc--eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCC-HHHhccccCcCcccc
Confidence 446667789999999999999 99999999999999999999999999999999999876542 23343333332 12
Q ss_pred ceee------------------------------------cC---------CCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 472 PIFE------------------------------------KG---------YEKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 472 ~~~~------------------------------------~~---------~~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
++|+ ++ ......+..|.++++|+..+|-+|++|||
T Consensus 420 eLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEP 499 (580)
T COG4618 420 ELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEP 499 (580)
T ss_pred eecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCC
Confidence 2221 12 22333444589999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhhhccccEEEEEE
Q 008816 507 GRMQVIIEYYLFLLHIYLHTVCEHFVNIIT 536 (552)
Q Consensus 507 Gr~~~~~~lm~eL~kl~~~~~~~~~~~ii~ 536 (552)
-.+.|.+....-..-|..+......+.+|+
T Consensus 500 NsNLD~~GE~AL~~Ai~~~k~rG~~vvvia 529 (580)
T COG4618 500 NSNLDSEGEAALAAAILAAKARGGTVVVIA 529 (580)
T ss_pred CCCcchhHHHHHHHHHHHHHHcCCEEEEEe
Confidence 987776543333333333333334444443
No 280
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=4.3e-10 Score=112.99 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=75.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCC---------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF--------------------- 454 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~--------------------- 454 (552)
.++++++|.+.+|+ +++|+|+||+|||||++.|++... +..|+|.+.+.++.
T Consensus 19 ~~l~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 19 QILFDINLDIYKRE--VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 57899999999999 999999999999999999999875 35787777543321
Q ss_pred --cchHHHHHH--------------------HHHHHcCCce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 455 --RSGAVEQLR--------------------THARRLQVPI-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 455 --r~ga~eqL~--------------------~~~~~l~v~~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
.....+.+. .+.+.+++.- . .........+..+.+|++|+..+++++|+|+|
T Consensus 97 ~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 176 (251)
T PRK14244 97 PFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176 (251)
T ss_pred cccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000111111 1122223310 0 01122344555688999999999999999999
Q ss_pred CCCCChHH
Q 008816 507 GRMQVIIE 514 (552)
Q Consensus 507 Gr~~~~~~ 514 (552)
+...+...
T Consensus 177 t~~LD~~~ 184 (251)
T PRK14244 177 CSALDPVA 184 (251)
T ss_pred CccCCHHH
Confidence 98776543
No 281
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=4.6e-10 Score=113.71 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=76.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-----CceEEEeeecCC---------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF--------------------- 454 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-----ggkVll~~~D~~--------------------- 454 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++.+.+. .|+|.+.+.|+.
T Consensus 21 ~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 21 KILEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred eEeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 47899999999999 99999999999999999999998874 577777665431
Q ss_pred --cchHHHHHHH-------------------HHHHcCCc-----eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 455 --RSGAVEQLRT-------------------HARRLQVP-----IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 455 --r~ga~eqL~~-------------------~~~~l~v~-----~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
.....+.+.. +.+.+++. ... ........+..+.+|++++..+|+++|+|+|.
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~ 178 (261)
T PRK14258 99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178 (261)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0001111110 11112221 001 11234455566889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 179 ~~LD~~~ 185 (261)
T PRK14258 179 FGLDPIA 185 (261)
T ss_pred ccCCHHH
Confidence 7665543
No 282
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=5.4e-10 Score=113.68 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=76.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+. +..|+|.+.+.++.+
T Consensus 34 ~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 34 EAIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred eeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 47899999999999 999999999999999999999885 467888776544310
Q ss_pred ---chHHHHHHH-------------------HHHHcCCc-----eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRT-------------------HARRLQVP-----IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~-------------------~~~~l~v~-----~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+.. ..+.+++. ... ...........+.+|++|+..+++++|+|+|.
T Consensus 112 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt 191 (267)
T PRK14237 112 PFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPA 191 (267)
T ss_pred cccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 001111110 01122221 001 11233445566889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 192 ~~LD~~~ 198 (267)
T PRK14237 192 SALDPIS 198 (267)
T ss_pred ccCCHHH
Confidence 7766544
No 283
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=4.7e-10 Score=112.79 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=76.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh--h---CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~--~---~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+|||||||+++.|++.+. + ..|+|.+.+.++.+
T Consensus 18 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 18 HAVKDVSMDFPENS--VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 48999999999999 999999999999999999999875 3 46778776544311
Q ss_pred ----chHHHHHH-------------------HHHHHcCCce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 456 ----SGAVEQLR-------------------THARRLQVPI-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 456 ----~ga~eqL~-------------------~~~~~l~v~~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
....+.+. ...+.+++.- . .........+..+.+|++|+..+|+++|+|+|
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 175 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP 175 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00111111 1111223210 0 01122344556688999999999999999999
Q ss_pred CCCCChHH
Q 008816 507 GRMQVIIE 514 (552)
Q Consensus 507 Gr~~~~~~ 514 (552)
....+...
T Consensus 176 ~~gLD~~~ 183 (252)
T PRK14256 176 ASALDPIS 183 (252)
T ss_pred cccCCHHH
Confidence 97766543
No 284
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.14 E-value=3e-10 Score=130.24 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=85.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc-----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------------------- 456 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------------------- 456 (552)
..+|++++|.+++|+ .++|+|+||+||||+++.|++++.+..|+|.+.+.|....
T Consensus 470 ~~il~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti 547 (694)
T TIGR01846 470 PEVLSNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSI 547 (694)
T ss_pred ccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhH
Confidence 358999999999999 9999999999999999999999999999999987764210
Q ss_pred ----------hHHHHHHHHHHHcC-----------Cc--eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 457 ----------GAVEQLRTHARRLQ-----------VP--IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 457 ----------ga~eqL~~~~~~l~-----------v~--~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
...+++...++..+ +. +-+.+......+..|.+|++|+..+|+++|+|||+...|..
T Consensus 548 ~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~ 627 (694)
T TIGR01846 548 RDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE 627 (694)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence 01122222222211 11 22233456667777999999999999999999999877765
Q ss_pred HHH
Q 008816 514 EYY 516 (552)
Q Consensus 514 ~lm 516 (552)
...
T Consensus 628 ~~~ 630 (694)
T TIGR01846 628 SEA 630 (694)
T ss_pred HHH
Confidence 433
No 285
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=4.4e-10 Score=108.60 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=50.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
..+++++++.+++|+ +.+|+||||+|||||+..++++++.+.|.|.+.+.|.-.
T Consensus 14 ~~vl~~isl~i~~g~--iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~ 67 (252)
T COG4604 14 KVVLDDVSLDIPKGG--ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS 67 (252)
T ss_pred EEeeccceeeecCCc--eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeeccc
Confidence 457889999999999 999999999999999999999999999999999988643
No 286
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=4.5e-10 Score=115.51 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=75.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCCc-----------c--------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTFR-----------S-------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~r-----------~-------- 456 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++.+. +..|.|.+.+.++.. .
T Consensus 53 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 53 EAVKKVNADILSKY--VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 48899999999999 999999999999999999999754 378888876544210 0
Q ss_pred ----hHHHHH-------------------HHHHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 457 ----GAVEQL-------------------RTHARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 457 ----ga~eqL-------------------~~~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
...+.+ ..+.+.+++. .. .........+..+.+|++|+..+++++|+|+|.
T Consensus 131 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt 210 (286)
T PRK14275 131 PFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPT 210 (286)
T ss_pred CCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 000111 1111122221 00 011223445556889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 211 ~gLD~~~ 217 (286)
T PRK14275 211 SALDPKA 217 (286)
T ss_pred ccCCHHH
Confidence 7665543
No 287
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.13 E-value=7.1e-10 Score=112.62 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=74.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+|||||++.|++++. +..|.|.+.+.++.+
T Consensus 24 ~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 24 LAVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred EEeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 57899999999999 999999999999999999999875 257888776544310
Q ss_pred ---chHHHHHHH-----------------HHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 456 ---SGAVEQLRT-----------------HARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 456 ---~ga~eqL~~-----------------~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
....+.+.. ..+.+++. .. .........+..+.+|++|+..+|+++|+|+|...
T Consensus 102 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 181 (264)
T PRK14243 102 PFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSA 181 (264)
T ss_pred cccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 001111110 00111110 00 01112334455588999999999999999999977
Q ss_pred CChHHH
Q 008816 510 QVIIEY 515 (552)
Q Consensus 510 ~~~~~l 515 (552)
.+....
T Consensus 182 LD~~~~ 187 (264)
T PRK14243 182 LDPIST 187 (264)
T ss_pred CCHHHH
Confidence 665443
No 288
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.4e-10 Score=122.70 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=97.2
Q ss_pred CCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------
Q 008816 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------- 457 (552)
Q Consensus 395 ~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------- 457 (552)
.|..+..+|++++|.+.+|+ .|+|+|++||||||++..|++.+.++.|+|.+.+.++....
T Consensus 346 y~~~~~~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl 423 (573)
T COG4987 346 YPGQQTKALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423 (573)
T ss_pred cCCCccchhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence 46667789999999999999 99999999999999999999999999999999987764211
Q ss_pred ----------------HHHHHHHHHHHcC-------------CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 458 ----------------AVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 458 ----------------a~eqL~~~~~~l~-------------v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
..|++....+.++ ..+-+.|...+-.+.-|.||++++.++.+++|+|||+-
T Consensus 424 F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTe 503 (573)
T COG4987 424 FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTE 503 (573)
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcc
Confidence 1122222222221 12223444555567778999999999999999999998
Q ss_pred CCChHHHHHHHHHHhhhhc
Q 008816 509 MQVIIEYYLFLLHIYLHTV 527 (552)
Q Consensus 509 ~~~~~~lm~eL~kl~~~~~ 527 (552)
..|....-+.|..+-....
T Consensus 504 gLD~~TE~~vL~ll~~~~~ 522 (573)
T COG4987 504 GLDPITERQVLALLFEHAE 522 (573)
T ss_pred cCChhhHHHHHHHHHHHhc
Confidence 8877766666665554333
No 289
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=6.1e-10 Score=111.75 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=74.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.+
T Consensus 17 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 17 KAVKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred eeEeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 47899999999999 9999999999999999999998873 67888876654321
Q ss_pred ---chHHHHHHHH-------------------HHHcCCce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRTH-------------------ARRLQVPI-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~~-------------------~~~l~v~~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+... .+.+++.- . .........+..+.+|++|+..+++++|+|+|.
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 0011111110 01111100 0 001122334455889999999999999999999
Q ss_pred CCCChH
Q 008816 508 RMQVII 513 (552)
Q Consensus 508 r~~~~~ 513 (552)
...+..
T Consensus 175 ~~LD~~ 180 (250)
T PRK14262 175 SALDPI 180 (250)
T ss_pred cccCHH
Confidence 766554
No 290
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=5.9e-10 Score=111.99 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=76.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH---hh--CCceEEEeeecCCcc-------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL---LQ--HKVSVMMAACDTFRS------------------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l---~~--~ggkVll~~~D~~r~------------------- 456 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|+++. .+ ..|+|.+.+.++.+.
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 17 HALKGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred eEEeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 47899999999999 99999999999999999999863 33 378887765543210
Q ss_pred ----hHHHHHH-------------------HHHHHcCCce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 457 ----GAVEQLR-------------------THARRLQVPI-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 457 ----ga~eqL~-------------------~~~~~l~v~~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
...+.+. .+.+.+++.- . .........+..+.+|++|+..+|+++|+|+|.
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0111111 1112223210 0 111234445566889999999999999999999
Q ss_pred CCCChHHH
Q 008816 508 RMQVIIEY 515 (552)
Q Consensus 508 r~~~~~~l 515 (552)
...+....
T Consensus 175 ~~LD~~~~ 182 (250)
T PRK14245 175 SALDPIST 182 (250)
T ss_pred ccCCHHHH
Confidence 77665443
No 291
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=5.1e-10 Score=114.37 Aligned_cols=119 Identities=21% Similarity=0.176 Sum_probs=78.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++++.+ ..|+|.+.+.++..
T Consensus 34 ~~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 34 LALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred EEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 48899999999999 9999999999999999999998753 46888776654321
Q ss_pred ---chHHHHHHH-----------------HHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 456 ---SGAVEQLRT-----------------HARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 456 ---~ga~eqL~~-----------------~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
....+.+.. ..+.+++. .. .........+..+.+|++|+..+|+++|+|+|...
T Consensus 112 l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~ 191 (274)
T PRK14265 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191 (274)
T ss_pred cccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 001111110 01111210 00 01122344556689999999999999999999976
Q ss_pred CChHHHHHHHHHH
Q 008816 510 QVIIEYYLFLLHI 522 (552)
Q Consensus 510 ~~~~~lm~eL~kl 522 (552)
.+. .....+.++
T Consensus 192 LD~-~~~~~l~~~ 203 (274)
T PRK14265 192 LDP-ISTRQVEEL 203 (274)
T ss_pred CCH-HHHHHHHHH
Confidence 654 333344333
No 292
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.13 E-value=7.3e-10 Score=112.97 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=77.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.+
T Consensus 39 ~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 39 QALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred eEeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 47899999999999 9999999999999999999998763 67888876655321
Q ss_pred ---chHHHHHHH-------------------HHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRT-------------------HARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~-------------------~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+.. ..+.+++. .. .........+..+.+|++|+..+++++|+|+|+
T Consensus 117 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 196 (272)
T PRK14236 117 PFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196 (272)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 001111110 11111221 00 011223445566899999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 197 ~gLD~~~ 203 (272)
T PRK14236 197 SALDPIS 203 (272)
T ss_pred ccCCHHH
Confidence 8766543
No 293
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.8e-10 Score=107.58 Aligned_cols=138 Identities=17% Similarity=0.070 Sum_probs=95.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC--c-------------------chHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--R-------------------SGAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~--r-------------------~ga~ 459 (552)
-++.+++|.+..|+ .+.|.||||+||||+++.||+++.+..|+|.+.++.+. | ..+.
T Consensus 16 ~lf~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 16 TLFSDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred eeecceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 46788999999999 99999999999999999999999999999999866542 1 2345
Q ss_pred HHHHHHHHHcCC---------------ceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 460 EQLRTHARRLQV---------------PIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 460 eqL~~~~~~l~v---------------~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
|.|+.|.+..+- .-+. ..+..+..+--|.||++-.....++.|+|||... .+..-...|..+
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta-LDk~g~a~l~~l 172 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA-LDKEGVALLTAL 172 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc-cCHHHHHHHHHH
Confidence 566655543321 0000 0112233334478888888899999999999854 455666666666
Q ss_pred hhhh-ccccEEEEEEecCcc
Q 008816 523 YLHT-VCEHFVNIITFRGMW 541 (552)
Q Consensus 523 ~~~~-~~~~~~~ii~~~~~f 541 (552)
.... ....++...++.+..
T Consensus 173 ~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 173 MAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHhcCCCEEEEecCCccC
Confidence 5443 344555555555443
No 294
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.13 E-value=4.7e-10 Score=114.75 Aligned_cols=51 Identities=33% Similarity=0.331 Sum_probs=45.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC--------CceEEEeeecC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--------KVSVMMAACDT 453 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~--------ggkVll~~~D~ 453 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+. .|.|.+.+.+.
T Consensus 15 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 15 AILRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEc
Confidence 47899999999999 99999999999999999999999886 78888866543
No 295
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=9.5e-10 Score=110.31 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=75.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCC---------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF--------------------- 454 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~--------------------- 454 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|.|.+.+.++.
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 17 QALKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred eeeecceEEecCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 47899999999999 9999999999999999999998875 3677777654431
Q ss_pred -cchHHHHHHH-------------------HHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 455 -RSGAVEQLRT-------------------HARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 455 -r~ga~eqL~~-------------------~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
.....+.+.. ..+.+++. .. .........+..+.+|++|+..+|+++|+|+|+.
T Consensus 95 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 174 (249)
T PRK14253 95 FPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTS 174 (249)
T ss_pred CcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 0000111110 00111211 00 0111234455568899999999999999999997
Q ss_pred CCChHH
Q 008816 509 MQVIIE 514 (552)
Q Consensus 509 ~~~~~~ 514 (552)
..+...
T Consensus 175 ~LD~~~ 180 (249)
T PRK14253 175 ALDPIA 180 (249)
T ss_pred cCCHHH
Confidence 766543
No 296
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=6e-10 Score=115.66 Aligned_cols=51 Identities=25% Similarity=0.263 Sum_probs=44.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDT 453 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~ 453 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+. +..|+|.+.+.++
T Consensus 59 ~iL~~is~~i~~Ge--~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 59 HALKGVSMDIPEKS--VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 (305)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 37889999999999 999999999999999999999875 4688888766543
No 297
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.13 E-value=5.3e-10 Score=125.06 Aligned_cols=136 Identities=16% Similarity=0.141 Sum_probs=94.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+++|+ +++|+||||+||||++..|++++.++.|+|.+.+.|+....
T Consensus 356 ~~l~~vs~~i~~G~--~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~ 433 (555)
T TIGR01194 356 FALGPIDLRIAQGD--IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG 433 (555)
T ss_pred ceeccceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhh
Confidence 48999999999999 99999999999999999999999999999999876643111
Q ss_pred -------HHHHHHHHHHHcCCce----eecCC----CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 458 -------AVEQLRTHARRLQVPI----FEKGY----EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 458 -------a~eqL~~~~~~l~v~~----~~~~~----~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
..+++...++.+++.- .+.++ .....+..|.+|++|+..+++++|+|||+...|..........+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 1122333444444432 12222 34566777899999999999999999999777665433332333
Q ss_pred hh-hhccccEEEEEEec
Q 008816 523 YL-HTVCEHFVNIITFR 538 (552)
Q Consensus 523 ~~-~~~~~~~~~ii~~~ 538 (552)
.. .......+.++++.
T Consensus 514 ~~~~~~~~~tiiiisH~ 530 (555)
T TIGR01194 514 LPDLKRQGKTIIIISHD 530 (555)
T ss_pred HHHHHhCCCEEEEEecc
Confidence 21 11223455555543
No 298
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=8.1e-10 Score=111.06 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=75.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-----CceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-----ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++.+.+. .|.|.+.+.++..
T Consensus 18 ~il~~~s~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 18 QVLKNINMDFPERQ--ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred eEecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 48899999999999 99999999999999999999998876 5888776544311
Q ss_pred ---chHHHHHHHH-------------------HHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRTH-------------------ARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~~-------------------~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+... .+.+++. .. .........+..+.+|++|+..+|+++|+|+|.
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 175 (251)
T PRK14249 96 PFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175 (251)
T ss_pred cCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0011111100 0111211 00 111223445556889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 176 ~~LD~~~ 182 (251)
T PRK14249 176 SALDPVS 182 (251)
T ss_pred ccCCHHH
Confidence 7665543
No 299
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.12 E-value=3.5e-10 Score=126.87 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=83.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------ 455 (552)
..+|+++++.+++|+ .++|+||||+||||++..|++++.+..|+|.+.+.|...
T Consensus 328 ~~~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti 405 (569)
T PRK10789 328 HPALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTV 405 (569)
T ss_pred CccccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccH
Confidence 358999999999999 999999999999999999999999999999887655310
Q ss_pred --------c-hHHHHHHHHHHHcCCc-------------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 456 --------S-GAVEQLRTHARRLQVP-------------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 456 --------~-ga~eqL~~~~~~l~v~-------------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
. ...+++....+..++. +-+.+......+..|.+|++|+..+++++|+|+|+...|..
T Consensus 406 ~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~ 485 (569)
T PRK10789 406 ANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGR 485 (569)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHH
Confidence 0 0112222222222211 11122345566777899999999999999999999877665
Q ss_pred HHH
Q 008816 514 EYY 516 (552)
Q Consensus 514 ~lm 516 (552)
...
T Consensus 486 ~~~ 488 (569)
T PRK10789 486 TEH 488 (569)
T ss_pred HHH
Confidence 433
No 300
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.12 E-value=4.6e-10 Score=123.94 Aligned_cols=112 Identities=20% Similarity=0.126 Sum_probs=78.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc----------h-------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------G------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------g------------- 457 (552)
.+|++++|.+.+|+ +++|+|+||+|||||++.|++.+.+..|.|.+.+.++... +
T Consensus 18 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (501)
T PRK11288 18 KALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMT 95 (501)
T ss_pred EEEeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCC
Confidence 48899999999999 9999999999999999999999999999998866553210 0
Q ss_pred HHH---------------------HHHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 AVE---------------------QLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 a~e---------------------qL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+ .+..+.+.+++.... ........+..+.+|++|+..+|+++|+|||+...+...
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 001 111112222332110 011233345558899999999999999999997766543
No 301
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.12 E-value=3.5e-10 Score=127.34 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=81.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------- 455 (552)
.++++++|.+++|+ .++|+|+||+||||+++.|++++.+..|+|.+.+.|...
T Consensus 349 ~~l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 349 QGVFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426 (585)
T ss_pred ccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHH
Confidence 47999999999999 999999999999999999999999999999887654321
Q ss_pred -------ch-HHHHHHHHHHHcC-----------Cc--eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 456 -------SG-AVEQLRTHARRLQ-----------VP--IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 456 -------~g-a~eqL~~~~~~l~-----------v~--~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.. ..+++...++..+ .. +-+.+......+..|.+|++|+..+|+++|+|||+...|...
T Consensus 427 ~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 00 0112221111111 11 112233456677779999999999999999999997666543
No 302
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.12 E-value=3.1e-10 Score=127.01 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=83.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC-------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------------------- 454 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~------------------------- 454 (552)
..+|++++|.+++|+ .++|+|+||+||||+++.|++++.+..|.|.+.+.|..
T Consensus 353 ~~iL~~inl~i~~Ge--~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti 430 (576)
T TIGR02204 353 QPALDGLNLTVRPGE--TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASV 430 (576)
T ss_pred CccccceeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccH
Confidence 358999999999999 99999999999999999999999999999988765421
Q ss_pred -------cc-hHHHHHHHHHHHcC-------------CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 455 -------RS-GAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 455 -------r~-ga~eqL~~~~~~l~-------------v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
++ ...+.+....+..+ ..+-+.+......+..|.++++|+..+++++|+|||+...|..
T Consensus 431 ~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~ 510 (576)
T TIGR02204 431 MENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510 (576)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHH
Confidence 00 01122222222221 1122233445667788999999999999999999999876665
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 511 ~ 511 (576)
T TIGR02204 511 S 511 (576)
T ss_pred H
Confidence 4
No 303
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.12 E-value=4e-10 Score=127.74 Aligned_cols=113 Identities=13% Similarity=0.028 Sum_probs=80.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------h----------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------G---------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------g---------- 457 (552)
..++++++|.+..|+ +++|+|+||||||||++.|++++.+..|+|.+.+.++... +
T Consensus 337 ~~~l~~vs~~i~~Ge--~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l 414 (623)
T PRK10261 337 VHAVEKVSFDLWPGE--TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414 (623)
T ss_pred eEEEeeeEeEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc
Confidence 358999999999999 9999999999999999999999999999998866543110 0
Q ss_pred -----HHHHH-------------------HHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 458 -----AVEQL-------------------RTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 458 -----a~eqL-------------------~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
..+.+ ..+.+.+++. ... ........+..|.+|++|+..+|+++|+|||+...
T Consensus 415 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~L 494 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSAL 494 (623)
T ss_pred CCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 01111 1112223442 111 11233445556899999999999999999999776
Q ss_pred ChHH
Q 008816 511 VIIE 514 (552)
Q Consensus 511 ~~~~ 514 (552)
|...
T Consensus 495 D~~~ 498 (623)
T PRK10261 495 DVSI 498 (623)
T ss_pred CHHH
Confidence 6543
No 304
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.12 E-value=4.9e-10 Score=122.19 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=80.1
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHH------------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE------------------ 460 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~e------------------ 460 (552)
.+.+|++++|.+.+|+ |++++|.||+|||||++.|++.+.++.|.|.+.+.........+
T Consensus 20 gV~AL~~v~l~v~~GE--V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~ 97 (500)
T COG1129 20 GVKALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPN 97 (500)
T ss_pred CceeeccceeEEeCce--EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCC
Confidence 4678999999999999 99999999999999999999999999999998765432111111
Q ss_pred -----------------------HHH----HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 461 -----------------------QLR----THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 461 -----------------------qL~----~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
.++ .....+++.... .-.....++....+|++|+..+..+||+|||+....
T Consensus 98 LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt 177 (500)
T COG1129 98 LSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALT 177 (500)
T ss_pred ccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 111 111222332100 011233344446889999999999999999997665
Q ss_pred hHH
Q 008816 512 IIE 514 (552)
Q Consensus 512 ~~~ 514 (552)
..+
T Consensus 178 ~~E 180 (500)
T COG1129 178 VKE 180 (500)
T ss_pred HHH
Confidence 543
No 305
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.12 E-value=9.2e-10 Score=110.48 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=75.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++..
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 17 QALKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 47899999999999 9999999999999999999998652 47888776544321
Q ss_pred ---chHHHHHHH-------------------HHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRT-------------------HARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~-------------------~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+.. ..+.+++. .. .........+..+.+|++|+..+|+++|+|+|.
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 001111111 01111210 00 111234455666899999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 175 ~~LD~~~ 181 (250)
T PRK14240 175 SALDPIS 181 (250)
T ss_pred ccCCHHH
Confidence 7765543
No 306
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.12 E-value=3.2e-10 Score=125.41 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=45.4
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
+|++++|.+..|+ +++|+||||||||||++.|++++.+..|+|.+.+.+
T Consensus 278 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 326 (510)
T PRK09700 278 KVRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD 326 (510)
T ss_pred cccceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE
Confidence 7899999999999 999999999999999999999999999999886654
No 307
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=5.1e-10 Score=123.79 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=77.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh--CCceEEEeeecCCcc----------h-----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTFRS----------G----------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~--~ggkVll~~~D~~r~----------g----------- 457 (552)
.+|++++|.+.+|+ +++|+||||||||||++.|++.+.+ ..|.|.+.+.++... +
T Consensus 19 ~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 19 KALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred EeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 58999999999999 9999999999999999999999885 688888766543110 0
Q ss_pred --HHH---------------------HHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 458 --AVE---------------------QLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 458 --a~e---------------------qL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+ .+..+.+.+++.-... .......+..|.+|++|+..+|+++|+|||+...+.
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 001 1111222233321110 112333445589999999999999999999976665
Q ss_pred HH
Q 008816 513 IE 514 (552)
Q Consensus 513 ~~ 514 (552)
..
T Consensus 177 ~~ 178 (506)
T PRK13549 177 SE 178 (506)
T ss_pred HH
Confidence 43
No 308
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.12 E-value=5.7e-10 Score=111.07 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=84.2
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHH------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA------------ 466 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~------------ 466 (552)
.-.+|.+|++.+++|+ -.+|+||||+||||+++.|++...+..+.+.+.+.-.-+......++...
T Consensus 43 gk~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~ 120 (257)
T COG1119 43 GKKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120 (257)
T ss_pred CEeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcc
Confidence 4468999999999999 99999999999999999999999998888888765332211112222211
Q ss_pred ------------------------------------HHcCCc-eeecCC-CCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 467 ------------------------------------RRLQVP-IFEKGY-EKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 467 ------------------------------------~~l~v~-~~~~~~-~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
+.++.. +..+.+ .....+..+..|++|+..+|.++|+|||..
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~ 200 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200 (257)
T ss_pred cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence 111111 000000 111122236789999999999999999998
Q ss_pred CCChHHHHHHHHHHhhhh
Q 008816 509 MQVIIEYYLFLLHIYLHT 526 (552)
Q Consensus 509 ~~~~~~lm~eL~kl~~~~ 526 (552)
..+....+.-+..+..+.
T Consensus 201 GLDl~~re~ll~~l~~~~ 218 (257)
T COG1119 201 GLDLIAREQLLNRLEELA 218 (257)
T ss_pred cCChHHHHHHHHHHHHHh
Confidence 777766655555555443
No 309
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.12 E-value=4.5e-10 Score=115.57 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=77.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe------eecCC--cchHHHHH----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA------ACDTF--RSGAVEQL---------- 462 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~------~~D~~--r~ga~eqL---------- 462 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|.|.+. ..+.+ .....+.+
T Consensus 51 ~vL~~vs~~i~~Ge--~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~ 128 (282)
T cd03291 51 PVLKNINLKIEKGE--MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYR 128 (282)
T ss_pred cceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHH
Confidence 48899999999999 999999999999999999999999888887652 22211 10111111
Q ss_pred -HHHHHHcCCc-------e-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 463 -RTHARRLQVP-------I-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 463 -~~~~~~l~v~-------~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
....+..++. . . ............+.+|++++..+|+++|+|+|....+...
T Consensus 129 ~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~ 194 (282)
T cd03291 129 YKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194 (282)
T ss_pred HHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 1111111211 0 0 0112455677778999999999999999999997766544
No 310
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.11 E-value=3.2e-10 Score=124.88 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=47.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.+|++++|.+..|+ +++|+|+|||||||+++.|++.+.+..|+|.+.+.++
T Consensus 262 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 312 (491)
T PRK10982 262 PSIRDVSFDLHKGE--ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKI 312 (491)
T ss_pred cccceeeEEEeCCc--EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEEC
Confidence 47899999999999 9999999999999999999999999999999877664
No 311
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.11 E-value=4.4e-10 Score=124.94 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=76.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc-------------chH---
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------SGA--- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------~ga--- 458 (552)
..+|++++|.+..|+ +++|+||||||||||++.|++.+.+ ..|.|.+.+.++.. .+.
T Consensus 22 ~~~l~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q 99 (529)
T PRK15134 22 RTVVNDVSLQIEAGE--TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQ 99 (529)
T ss_pred eeeeeceEEEEeCCC--EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEec
Confidence 358999999999999 9999999999999999999999875 57777765544210 000
Q ss_pred ------------HHH-------------------HHHHHHHcCCce-----eecCCCCCHHHHHHHHHHHHHhCCCCEEE
Q 008816 459 ------------VEQ-------------------LRTHARRLQVPI-----FEKGYEKDPAIVAKEAIQEATRNGSDVVL 502 (552)
Q Consensus 459 ------------~eq-------------------L~~~~~~l~v~~-----~~~~~~~dp~~iar~aIa~a~~~~~DvVI 502 (552)
.+. +....+.+++.- ..........+..|.+|++|+..+|+++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~lll 179 (529)
T PRK15134 100 EPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179 (529)
T ss_pred CchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 000 001111223321 00112334445558899999999999999
Q ss_pred EeCCCCCCChHH
Q 008816 503 VDTAGRMQVIIE 514 (552)
Q Consensus 503 IDtpGr~~~~~~ 514 (552)
+|||+...+...
T Consensus 180 lDEPt~~LD~~~ 191 (529)
T PRK15134 180 ADEPTTALDVSV 191 (529)
T ss_pred EcCCCCccCHHH
Confidence 999997666543
No 312
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.11 E-value=6.1e-10 Score=106.48 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=82.1
Q ss_pred ccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------------
Q 008816 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------------ 455 (552)
Q Consensus 406 i~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------------ 455 (552)
+++.++.|+ +++|+||+|+||||+++.||++..+..|.|.|.+.|.-.
T Consensus 18 fdl~v~~ge--~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 18 FDLTVPAGE--IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEeecCCc--EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence 566788999 999999999999999999999999999999999888421
Q ss_pred ------chHH--HHHHHHHHHcCCceeecC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 456 ------SGAV--EQLRTHARRLQVPIFEKG--YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 456 ------~ga~--eqL~~~~~~l~v~~~~~~--~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
..+. +++...+.++|+.-+... ....-.+..|.|+++++..+-.++++|+|-... +..+-.++..++.
T Consensus 96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsAL-dP~LR~eMl~Lv~ 173 (231)
T COG3840 96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL-DPALRAEMLALVS 173 (231)
T ss_pred CCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhc-CHHHHHHHHHHHH
Confidence 1122 222233444454433221 123334556899999999999999999998554 4455555555443
No 313
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1.1e-09 Score=111.82 Aligned_cols=112 Identities=15% Similarity=0.252 Sum_probs=76.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~r-------------------- 455 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+. +..|+|.+.+.++..
T Consensus 38 ~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 38 HALKNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 47899999999999 999999999999999999999986 477888876654321
Q ss_pred ---chHHHHHHH-------------------HHHHcCC--ce----eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRT-------------------HARRLQV--PI----FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~-------------------~~~~l~v--~~----~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+.. ..+.+++ .+ -............+.+|++++..+++++|+|+|.
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt 195 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT 195 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 000111110 0000110 00 0011223445556889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 196 ~~LD~~~ 202 (271)
T PRK14238 196 SALDPIS 202 (271)
T ss_pred CcCCHHH
Confidence 7766543
No 314
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.11 E-value=7.9e-10 Score=111.00 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=74.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh--h---CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~--~---~ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++... + ..|+|.+.+.++..
T Consensus 19 ~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 19 KALNSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred eeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 47899999999999 999999999999999999999743 4 37888876654310
Q ss_pred ---chHHHHHHH-------------------HHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRT-------------------HARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~-------------------~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+.. +.+.+++. .. .........+..+.+|++|+..+|+++|+|+|.
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 011111110 01111110 00 011123344555889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 177 ~~LD~~~ 183 (252)
T PRK14239 177 SALDPIS 183 (252)
T ss_pred cccCHHH
Confidence 7766544
No 315
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=8.7e-10 Score=110.69 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=74.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-----CceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-----ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+. .|.|.+.+.++..
T Consensus 18 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 18 QAVKNVNLDVQRGT--VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred EeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 48899999999999 99999999999999999999998753 5777776544310
Q ss_pred ----chHHHHHHHH---------------H----HHcCCc-----eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 456 ----SGAVEQLRTH---------------A----RRLQVP-----IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 456 ----~ga~eqL~~~---------------~----~~l~v~-----~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
....+.+... + ..+++. ... ........+..+.+|++|+..+|+++|+|+|
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0111111100 0 011110 000 0112344555688999999999999999999
Q ss_pred CCCCChHH
Q 008816 507 GRMQVIIE 514 (552)
Q Consensus 507 Gr~~~~~~ 514 (552)
....+...
T Consensus 176 ~~~LD~~~ 183 (252)
T PRK14272 176 TSALDPAS 183 (252)
T ss_pred CccCCHHH
Confidence 97666543
No 316
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.10 E-value=4.4e-10 Score=124.10 Aligned_cols=119 Identities=12% Similarity=0.056 Sum_probs=80.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------- 455 (552)
.++++++|.+.+|+ +++|+||||||||||++.|++.+.+..|.|.+.+.++..
T Consensus 267 ~~l~~isl~i~~Ge--~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGE--IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCc--EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 37899999999999 999999999999999999999999999999886543210
Q ss_pred -chHHHHH------------------------HHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 -SGAVEQL------------------------RTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 -~ga~eqL------------------------~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+ ..+...+++. ... ........+..|.+|++|+..+|+++|+|||+
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt 424 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPT 424 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCC
Confidence 0011111 1112223331 111 11233445556889999999999999999999
Q ss_pred CCCChHHHHHHHHHH
Q 008816 508 RMQVIIEYYLFLLHI 522 (552)
Q Consensus 508 r~~~~~~lm~eL~kl 522 (552)
...+.. ....+.++
T Consensus 425 ~~LD~~-~~~~l~~~ 438 (501)
T PRK11288 425 RGIDVG-AKHEIYNV 438 (501)
T ss_pred CCCCHh-HHHHHHHH
Confidence 665543 33333333
No 317
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.10 E-value=6.7e-10 Score=122.67 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=77.9
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc----------ch--------------
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----------SG-------------- 457 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r----------~g-------------- 457 (552)
++++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.++.. .+
T Consensus 267 ~l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGE--ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCc--EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 5889999999999 999999999999999999999999999999886644210 00
Q ss_pred --HHHH------------------------HHHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 458 --AVEQ------------------------LRTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 458 --a~eq------------------------L~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
..+. ...+...+++. ... ........+..|.+|++|+..+|+++|+|||+.
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 0010 11122223331 111 112234455568999999999999999999997
Q ss_pred CCChHH
Q 008816 509 MQVIIE 514 (552)
Q Consensus 509 ~~~~~~ 514 (552)
..|...
T Consensus 425 ~LD~~~ 430 (501)
T PRK10762 425 GVDVGA 430 (501)
T ss_pred CCCHhH
Confidence 766543
No 318
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1e-09 Score=111.15 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=74.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe------eecCCc------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA------ACDTFR------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~------~~D~~r------------------ 455 (552)
..++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+. +.++.+
T Consensus 23 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 23 KAILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred ceeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 357899999999999 999999999999999999999988776544332 222110
Q ss_pred ----chHHHHH-------------------HHHHHHcCCce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Q 008816 456 ----SGAVEQL-------------------RTHARRLQVPI-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTA 506 (552)
Q Consensus 456 ----~ga~eqL-------------------~~~~~~l~v~~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtp 506 (552)
....+.+ ..+.+.+++.- . ............+.+|++|+..+|+++|+|+|
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP 180 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0011111 11122233320 0 11122344566688999999999999999999
Q ss_pred CCCCChH
Q 008816 507 GRMQVII 513 (552)
Q Consensus 507 Gr~~~~~ 513 (552)
+...+..
T Consensus 181 t~~LD~~ 187 (257)
T PRK14246 181 TSMIDIV 187 (257)
T ss_pred CccCCHH
Confidence 9766554
No 319
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=1.2e-09 Score=111.96 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=76.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++..
T Consensus 35 ~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 35 TVLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred EEeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 58899999999999 9999999999999999999998875 57888776543210
Q ss_pred --chHHHHHH-------------------HHHHHcCCce-----e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 456 --SGAVEQLR-------------------THARRLQVPI-----F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 456 --~ga~eqL~-------------------~~~~~l~v~~-----~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
....+.+. .....+++.- . .........+..+.+|++|+..+|+++|+|+|+.
T Consensus 113 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~ 192 (276)
T PRK14271 113 FPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTS 192 (276)
T ss_pred CCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 00111111 0111223221 0 0112234456668999999999999999999997
Q ss_pred CCChHH
Q 008816 509 MQVIIE 514 (552)
Q Consensus 509 ~~~~~~ 514 (552)
..+...
T Consensus 193 ~LD~~~ 198 (276)
T PRK14271 193 ALDPTT 198 (276)
T ss_pred cCCHHH
Confidence 766543
No 320
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=6.1e-10 Score=123.83 Aligned_cols=120 Identities=17% Similarity=0.157 Sum_probs=80.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee--------cC--Cc-chHHH---------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--------DT--FR-SGAVE--------- 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~--------D~--~r-~ga~e--------- 460 (552)
.+|++++|.+.+|+ +++|+|||||||||+++.|++.+.+..|.|.+.+. +. +. ....+
T Consensus 15 ~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 92 (530)
T PRK15064 15 PLFENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTEL 92 (530)
T ss_pred EeEeCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHH
Confidence 48899999999999 99999999999999999999999988888776421 11 10 00000
Q ss_pred -----------------------------------------HHHHHHHHcCCcee--e-cCCCCCHHHHHHHHHHHHHhC
Q 008816 461 -----------------------------------------QLRTHARRLQVPIF--E-KGYEKDPAIVAKEAIQEATRN 496 (552)
Q Consensus 461 -----------------------------------------qL~~~~~~l~v~~~--~-~~~~~dp~~iar~aIa~a~~~ 496 (552)
......+.++++-. . ...........+.+|++++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~ 172 (530)
T PRK15064 93 WEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhc
Confidence 11112223344311 0 112334455668999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 497 GSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 497 ~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
+|+++|+|||+...+. .....|.+++
T Consensus 173 ~p~lLlLDEPt~~LD~-~~~~~l~~~l 198 (530)
T PRK15064 173 NPDILLLDEPTNNLDI-NTIRWLEDVL 198 (530)
T ss_pred CCCEEEEcCCCcccCH-HHHHHHHHHH
Confidence 9999999999965554 4444444443
No 321
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.09 E-value=5.2e-10 Score=123.43 Aligned_cols=111 Identities=13% Similarity=0.064 Sum_probs=77.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeecCCc----------chHH----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFR----------SGAV---------- 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D~~r----------~ga~---------- 459 (552)
.++++++|.+.+|+ +++|+||||||||||++.|++.+.+ ..|.|.+.+.++.. .+.+
T Consensus 274 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 274 KRVDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred cccccceeEEeCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 48899999999999 9999999999999999999999985 78888876543310 0000
Q ss_pred -----------------------------HHHHHHHHHcCCce--ee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 460 -----------------------------EQLRTHARRLQVPI--FE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 460 -----------------------------eqL~~~~~~l~v~~--~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
+....+.+.+++.- .. ........+..|.+|++|+..+|+++|+|||+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 01111222333321 01 11233445556899999999999999999999
Q ss_pred CCCChH
Q 008816 508 RMQVII 513 (552)
Q Consensus 508 r~~~~~ 513 (552)
...|..
T Consensus 432 ~~LD~~ 437 (500)
T TIGR02633 432 RGVDVG 437 (500)
T ss_pred CCcCHh
Confidence 766554
No 322
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.09 E-value=6.1e-10 Score=126.28 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=79.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC--------------------Cc---c
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------------------FR---S 456 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~--------------------~r---~ 456 (552)
..++++|+|.+.+|+ +++|+|+||||||||++.|++++.+.+|.|.+.+.+. +| .
T Consensus 29 ~~~l~~is~~v~~Ge--~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i 106 (623)
T PRK10261 29 IAAVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM 106 (623)
T ss_pred eeEEEeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE
Confidence 458999999999999 9999999999999999999999988888776543200 00 0
Q ss_pred ---------------hHHHHHH-------------------HHHHHcCCce----e-ecCCCCCHHHHHHHHHHHHHhCC
Q 008816 457 ---------------GAVEQLR-------------------THARRLQVPI----F-EKGYEKDPAIVAKEAIQEATRNG 497 (552)
Q Consensus 457 ---------------ga~eqL~-------------------~~~~~l~v~~----~-~~~~~~dp~~iar~aIa~a~~~~ 497 (552)
...+++. .+.+.++++- . ............|.+|++|+..+
T Consensus 107 g~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~ 186 (623)
T PRK10261 107 AMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCR 186 (623)
T ss_pred EEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCC
Confidence 1111111 1122334431 1 11223455566689999999999
Q ss_pred CCEEEEeCCCCCCChHH
Q 008816 498 SDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 498 ~DvVIIDtpGr~~~~~~ 514 (552)
|+++|+|||+...+...
T Consensus 187 P~lLllDEPt~~LD~~~ 203 (623)
T PRK10261 187 PAVLIADEPTTALDVTI 203 (623)
T ss_pred CCEEEEeCCCCccCHHH
Confidence 99999999997776655
No 323
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=6e-10 Score=123.18 Aligned_cols=112 Identities=11% Similarity=0.065 Sum_probs=76.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-hCCceEEEeeecCCc----------ch------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFR----------SG------------ 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-~~ggkVll~~~D~~r----------~g------------ 457 (552)
.++++++|.+.+|+ +++|+|+||+|||||++.|++++. +..|+|.+.+.++.. .+
T Consensus 276 ~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 276 KRVDDVSFSLRRGE--ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccceeeEEcCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 48899999999999 999999999999999999999998 488888876544210 00
Q ss_pred ----HHHH-----------------------HHHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 458 ----AVEQ-----------------------LRTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 458 ----a~eq-----------------------L~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
..+. ...+.+.+++. ... ........+..|.+|++|+..+|+++|+|||+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 0010 11111222331 100 11123334555889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 434 ~~LD~~~ 440 (506)
T PRK13549 434 RGIDVGA 440 (506)
T ss_pred CCcCHhH
Confidence 7766543
No 324
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=4.9e-10 Score=127.39 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=80.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe--------eecC---Ccc--hHHHH------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--------ACDT---FRS--GAVEQ------ 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~--------~~D~---~r~--ga~eq------ 461 (552)
.+|++++|.+.+|+ +++|+|||||||||+++.|++.+.+..|.|.+. ..+. ... ...+.
T Consensus 326 ~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~ 403 (638)
T PRK10636 326 IILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAP 403 (638)
T ss_pred eeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCc
Confidence 48899999999999 999999999999999999999999888887653 1111 000 01111
Q ss_pred ------HHHHHHHcCCc--ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 462 ------LRTHARRLQVP--IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 462 ------L~~~~~~l~v~--~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
.+.+...+++. .. ............|.+|++++..+|+++|+|+|+... |......|.+++
T Consensus 404 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L-D~~~~~~l~~~L 473 (638)
T PRK10636 404 QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL-DLDMRQALTEAL 473 (638)
T ss_pred hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC-CHHHHHHHHHHH
Confidence 11222333442 11 112234555666899999999999999999999655 444444444433
No 325
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.08 E-value=5e-10 Score=137.31 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=84.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh---------------------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--------------------------------------- 441 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~--------------------------------------- 441 (552)
.+|++++|.+++|+ .++|||++||||||+++.|.+++.+
T Consensus 1182 ~vL~~lsl~i~~G~--~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKK--TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred ccccCeeEEEcCCC--EEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 57899999999999 9999999999999999999999987
Q ss_pred ---------------CCceEEEeeecCCcc---------------------------------hHHHHHHHHHHHcCC--
Q 008816 442 ---------------HKVSVMMAACDTFRS---------------------------------GAVEQLRTHARRLQV-- 471 (552)
Q Consensus 442 ---------------~ggkVll~~~D~~r~---------------------------------ga~eqL~~~~~~l~v-- 471 (552)
..|+|.+.+.|+... ...+++...++..++
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDE 1339 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 589999988775311 112233333332221
Q ss_pred -----------ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 472 -----------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 472 -----------~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+-+.+......+..|.+|+||+..+|+++|+|||+...|.+.
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1222334456677789999999999999999999998776644
No 326
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=1.2e-09 Score=110.01 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=73.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCCcc-------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTFRS------------------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~r~------------------- 456 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.++.+.
T Consensus 20 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 20 HALYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred eeeeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 48899999999999 9999999999999999999997642 367777765443210
Q ss_pred ----hHHHHHH-------------------HHHHHcCCc--e---e-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 457 ----GAVEQLR-------------------THARRLQVP--I---F-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 457 ----ga~eqL~-------------------~~~~~l~v~--~---~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
...+.+. ...+.+++. + . .........+..+.+|++|+..+|+++|+|+|.
T Consensus 98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 177 (253)
T PRK14261 98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177 (253)
T ss_pred cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0001010 001111110 0 0 011123344555789999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 178 ~gLD~~~ 184 (253)
T PRK14261 178 SALDPIA 184 (253)
T ss_pred ccCCHHH
Confidence 7766543
No 327
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.08 E-value=1e-09 Score=121.13 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=77.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh--CCceEEEeeecCCc----------chH----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTFR----------SGA---------- 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~--~ggkVll~~~D~~r----------~ga---------- 458 (552)
.++++++|.+.+|+ +++|+|||||||||+++.|++.+.+ ..|.|.+.+.++.+ .+.
T Consensus 15 ~il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 15 KALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred EeecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 47899999999999 9999999999999999999998875 57888776544211 000
Q ss_pred ---HH----------------------HHHHHHHHcCCcee--ec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 459 ---VE----------------------QLRTHARRLQVPIF--EK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 459 ---~e----------------------qL~~~~~~l~v~~~--~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
.+ ....+.+.+++.-. .. .......+..+.+|++|+..+|+++|+|||+...
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 00 11112223333211 01 1233445556899999999999999999999766
Q ss_pred ChHH
Q 008816 511 VIIE 514 (552)
Q Consensus 511 ~~~~ 514 (552)
+...
T Consensus 173 D~~~ 176 (500)
T TIGR02633 173 TEKE 176 (500)
T ss_pred CHHH
Confidence 5543
No 328
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.08 E-value=9.5e-10 Score=121.96 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=78.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe-eec---C----------Cc--c--------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA-ACD---T----------FR--S-------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~-~~D---~----------~r--~-------- 456 (552)
.+|++++|.+.+|+ +++|+|||||||||+++.|++.+.+..|+|.+. +.+ + .+ .
T Consensus 298 ~il~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 298 KAVDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred eEEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 58999999999999 999999999999999999999999989999884 311 0 00 0
Q ss_pred -----hHHHHH-----------------HHHHHHcCCce------ee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 457 -----GAVEQL-----------------RTHARRLQVPI------FE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 457 -----ga~eqL-----------------~~~~~~l~v~~------~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
...+.+ ..+.+.+++.- .. ........+..|.+|++|+..+|+++|+|||+
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 011111 11223334431 11 11233445556899999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 456 ~~LD~~~ 462 (520)
T TIGR03269 456 GTMDPIT 462 (520)
T ss_pred ccCCHHH
Confidence 7665543
No 329
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=2.1e-09 Score=107.93 Aligned_cols=114 Identities=15% Similarity=0.201 Sum_probs=76.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh--h---CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~--~---~ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+. + ..|+|.+.+.++..
T Consensus 17 ~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 17 HILKNVNLDIPKNS--VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 47899999999999 999999999999999999999864 2 67888876655321
Q ss_pred ---chHHHHHH-------------------HHHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLR-------------------THARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~-------------------~~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+. ...+.+++. .. .........+..+.+|++|+..+++++|+|+|.
T Consensus 95 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14266 95 PFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPC 174 (250)
T ss_pred cCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 00011111 001111220 00 011223445556889999999999999999999
Q ss_pred CCCChHHHH
Q 008816 508 RMQVIIEYY 516 (552)
Q Consensus 508 r~~~~~~lm 516 (552)
...+.....
T Consensus 175 ~gLD~~~~~ 183 (250)
T PRK14266 175 SALDPISTT 183 (250)
T ss_pred ccCCHHHHH
Confidence 877664433
No 330
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.07 E-value=6.6e-10 Score=123.08 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=76.6
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc----------ch--------------
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----------SG-------------- 457 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r----------~g-------------- 457 (552)
+|++++|.+.+|+ +++|+||||+||||+++.|++.+.+..|.|.+.+.++.+ .+
T Consensus 278 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGE--ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5889999999999 999999999999999999999999888999876643211 00
Q ss_pred --HHHHH---------------------HHHHHHcCCc--eeec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 458 --AVEQL---------------------RTHARRLQVP--IFEK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 458 --a~eqL---------------------~~~~~~l~v~--~~~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
..+.+ ..+...+++. .... ..........+.+|++|+..+|+++|+|||+...+
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD 435 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcC
Confidence 01111 1111222332 1111 11233344558899999999999999999997665
Q ss_pred hHH
Q 008816 512 IIE 514 (552)
Q Consensus 512 ~~~ 514 (552)
...
T Consensus 436 ~~~ 438 (510)
T PRK15439 436 VSA 438 (510)
T ss_pred hhH
Confidence 543
No 331
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.07 E-value=1.3e-09 Score=120.88 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=43.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH--hhCCceEEEe
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMA 449 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l--~~~ggkVll~ 449 (552)
.+|++++|.+.+|+ +++|+||||||||||++.|++.+ .+..|+|.+.
T Consensus 14 ~~l~~is~~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~ 62 (520)
T TIGR03269 14 EVLKNISFTIEEGE--VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62 (520)
T ss_pred EeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEe
Confidence 48899999999999 99999999999999999999986 6788888774
No 332
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.06 E-value=2.1e-09 Score=106.40 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=69.5
Q ss_pred cccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC----cc---------------hHHHH--------
Q 008816 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----RS---------------GAVEQ-------- 461 (552)
Q Consensus 409 ~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~----r~---------------ga~eq-------- 461 (552)
.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++. +. ...+.
T Consensus 2 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 2 SADKGE--LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred ccCCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 456888 99999999999999999999999999998887665421 00 01111
Q ss_pred --------------HHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 462 --------------LRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 462 --------------L~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.....+.+++.-+. ...........+.+|++|+..+|+++|+|+|....+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~ 148 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11112222332111 011233445558899999999999999999997765543
No 333
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.06 E-value=8.1e-10 Score=125.55 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=79.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe--------eecC--Cc--chHHHHHH-----
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--------ACDT--FR--SGAVEQLR----- 463 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~--------~~D~--~r--~ga~eqL~----- 463 (552)
.+|++++|.+.+|+ +++|+||||+|||||+++|++.+.+..|.|.+. ..+. +. ....+.+.
T Consensus 333 ~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~ 410 (635)
T PRK11147 333 QLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQE 410 (635)
T ss_pred EEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhccc
Confidence 48899999999999 999999999999999999999999888887652 1111 00 01122111
Q ss_pred -----------HHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 464 -----------THARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 464 -----------~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
.+...+++. ... .....+.....|.+|++++..+|+++|+|+|+... +......|..++
T Consensus 411 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~L-D~~~~~~l~~~l 483 (635)
T PRK11147 411 VMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDL-DVETLELLEELL 483 (635)
T ss_pred ccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC-CHHHHHHHHHHH
Confidence 112222321 001 11234445566899999999999999999999655 444445555544
No 334
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=8e-10 Score=122.90 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=81.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee--------ecC---Cc--chHHHH------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA--------CDT---FR--SGAVEQ------ 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~--------~D~---~r--~ga~eq------ 461 (552)
.+|++++|.+.+|+ +++|+||||+||||+++.|++++.+..|.|.+.+ .+. +. ....+.
T Consensus 333 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 410 (530)
T PRK15064 333 PLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQ 410 (530)
T ss_pred eeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhcc
Confidence 48899999999999 9999999999999999999999998888776532 221 11 111221
Q ss_pred -------HHHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 462 -------LRTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 462 -------L~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
...+.+.+++. ... .....+..+..+.+|++++..+|+++|+|||+...+... ...|.++
T Consensus 411 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~-~~~l~~~ 480 (530)
T PRK15064 411 EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES-IESLNMA 480 (530)
T ss_pred CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH-HHHHHHH
Confidence 22233344442 111 122345566678999999999999999999997665543 3333333
No 335
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.8e-09 Score=113.48 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=80.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-----hCCceEEEeeecCC---------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF--------------------- 454 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-----~~ggkVll~~~D~~--------------------- 454 (552)
.+|++++|.+.+|+ +++|+|+||+||||++..|++... +..|.|.+.+.|+.
T Consensus 96 ~~L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 96 HVLHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 48999999999999 999999999999999999999875 35788877665542
Q ss_pred --cchHHHHHH-------------------HHHHHcCCc------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 455 --RSGAVEQLR-------------------THARRLQVP------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 455 --r~ga~eqL~-------------------~~~~~l~v~------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
.....+.+. ...+..++. +-..+......+..+.+|++|+..+++++|+|+|.
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt 253 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPT 253 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 000111111 011122221 11223344556677899999999999999999999
Q ss_pred CCCChHHHHHHHHHHh
Q 008816 508 RMQVIIEYYLFLLHIY 523 (552)
Q Consensus 508 r~~~~~~lm~eL~kl~ 523 (552)
...+... ...+.+++
T Consensus 254 s~LD~~~-~~~i~~~i 268 (329)
T PRK14257 254 SALDPIA-TAKIEELI 268 (329)
T ss_pred ccCCHHH-HHHHHHHH
Confidence 7765543 33344433
No 336
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.06 E-value=1.2e-09 Score=121.33 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=76.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------ch-----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------SG----------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------~g----------- 457 (552)
.+|++++|.+.+|+ +++|+||||||||||++.|++++. ..|+|.+.+.++.. .+
T Consensus 300 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 300 VVVKNISFTLRPGE--TLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 58999999999999 999999999999999999999885 77888776543210 00
Q ss_pred ----HHHHH--------------------HHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 458 ----AVEQL--------------------RTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 458 ----a~eqL--------------------~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
..+.+ ..+.+.+++. ... ........+..|.+|++|+..+|+++|+|||+...
T Consensus 377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 456 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456 (529)
T ss_pred CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCcccc
Confidence 01111 1111222332 111 11233445555899999999999999999999776
Q ss_pred ChHHH
Q 008816 511 VIIEY 515 (552)
Q Consensus 511 ~~~~l 515 (552)
+....
T Consensus 457 D~~~~ 461 (529)
T PRK15134 457 DKTVQ 461 (529)
T ss_pred CHHHH
Confidence 65443
No 337
>PLN03130 ABC transporter C family member; Provisional
Probab=99.06 E-value=7.6e-10 Score=136.91 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=84.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+++|+ .|+|||++|+||||++..|.+++.+..|+|.|.+.|+...+
T Consensus 1253 ~VL~~is~~I~~Ge--kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130 1253 PVLHGLSFEISPSE--KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred ceecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence 47999999999999 99999999999999999999999999999999888764221
Q ss_pred ---------HHHHHHHHHHHcC-------------CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 ---------AVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 ---------a~eqL~~~~~~l~-------------v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+++...++..+ ..+-+.+......+..+.+|+||+..+++++|+|||+...|.+.
T Consensus 1331 eNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1331 FNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred HHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 1122222222211 12223344556677778999999999999999999997765543
No 338
>PLN03232 ABC transporter C family member; Provisional
Probab=99.05 E-value=7e-10 Score=136.67 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=83.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|+|++|.+++|+ .|+|||++|+||||++..|.+++.+..|+|.+.+.|+...+
T Consensus 1250 ~vL~~isl~I~~Ge--kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232 1250 PVLHGLSFFVSPSE--KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred cccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHH
Confidence 47899999999999 99999999999999999999999999999999888753211
Q ss_pred ---------HHHHHHHHHHHcC-------------CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 458 ---------AVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 458 ---------a~eqL~~~~~~l~-------------v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
..+++....+..+ ..+-+.+......+..+.+|+||+..+++++|+|||+...|.+
T Consensus 1328 ~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~ 1405 (1495)
T PLN03232 1328 FNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR 1405 (1495)
T ss_pred HHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 1122222222211 1122233445667777899999999999999999999776654
No 339
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.05 E-value=1.3e-09 Score=119.92 Aligned_cols=113 Identities=16% Similarity=0.022 Sum_probs=74.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeecCCc----------chHHHH--------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFR----------SGAVEQ-------- 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D~~r----------~ga~eq-------- 461 (552)
.+|++++|.+.+|+ +++|+||||+||||+++.|++.+.+ ..|+|.+.+.+... .+.+.|
T Consensus 274 ~il~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 274 PILHNLSWQVNPGE--HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred eEEeeceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 48899999999999 9999999999999999999997654 47888776543210 000000
Q ss_pred -----------------------------HHHHHHHcCCce-e-ec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 462 -----------------------------LRTHARRLQVPI-F-EK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 462 -----------------------------L~~~~~~l~v~~-~-~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
...+.+.+++.- . .. .......+..|.+|++|+..+|+++|+|||+..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 011111222221 1 00 012233344478999999999999999999977
Q ss_pred CChHHH
Q 008816 510 QVIIEY 515 (552)
Q Consensus 510 ~~~~~l 515 (552)
.+....
T Consensus 432 LD~~~~ 437 (490)
T PRK10938 432 LDPLNR 437 (490)
T ss_pred CCHHHH
Confidence 665443
No 340
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=3.4e-09 Score=106.46 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=73.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh--h---CCceEEEeeecCCc--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTFR-------------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~--~---~ggkVll~~~D~~r-------------------- 455 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|++.+. + ..|.|.+.+.++..
T Consensus 19 ~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 19 EALKGIDLDFNQNE--ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 47899999999999 999999999999999999999764 3 36777665543210
Q ss_pred ---chHHHHHHH-------------------HHHHcCCc-----eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 456 ---SGAVEQLRT-------------------HARRLQVP-----IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 456 ---~ga~eqL~~-------------------~~~~l~v~-----~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
....+.+.. ..+.+++. ... ........+..+.+|++|+..+|+++|+|+|+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14255 97 PFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176 (252)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 011111110 01111110 000 11123445555889999999999999999999
Q ss_pred CCCChHH
Q 008816 508 RMQVIIE 514 (552)
Q Consensus 508 r~~~~~~ 514 (552)
...+...
T Consensus 177 ~~LD~~~ 183 (252)
T PRK14255 177 SALDPIS 183 (252)
T ss_pred ccCCHHH
Confidence 7666543
No 341
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=1.2e-09 Score=128.41 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=83.4
Q ss_pred CcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHH-------------
Q 008816 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT------------- 464 (552)
Q Consensus 398 ~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~------------- 464 (552)
+.+.+|+|+++.++.|+ .++||||+||||||.+..|-+++.+..|.|.|.+.|+.... ...||.
T Consensus 1001 P~~~Il~~l~l~i~~Gq--TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ln-l~~LR~~i~lVsQEP~LF~ 1077 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQ--TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLN-LKWLRKQIGLVSQEPVLFN 1077 (1228)
T ss_pred CCchhhcCCcEEecCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCC-HHHHHHhcceeccCchhhc
Confidence 45678999999999999 99999999999999999999999999999999888864321 111111
Q ss_pred ---------------------HHHHc-------------CCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 465 ---------------------HARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 465 ---------------------~~~~l-------------~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
-++.. +-.+-+++....-.+..|.||+||+..+|.++|+|||+...
T Consensus 1078 ~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSAL 1157 (1228)
T KOG0055|consen 1078 GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 (1228)
T ss_pred ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhh
Confidence 11110 11112223344455666999999999999999999999766
Q ss_pred Ch
Q 008816 511 VI 512 (552)
Q Consensus 511 ~~ 512 (552)
|.
T Consensus 1158 Ds 1159 (1228)
T KOG0055|consen 1158 DS 1159 (1228)
T ss_pred hh
Confidence 54
No 342
>PLN03211 ABC transporter G-25; Provisional
Probab=99.03 E-value=1.4e-09 Score=124.10 Aligned_cols=136 Identities=14% Similarity=0.096 Sum_probs=87.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC--CceEEEeeecCC----c--------------chHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDTF----R--------------SGAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~--ggkVll~~~D~~----r--------------~ga~e 460 (552)
.+|+++++.+.+|+ +++|+||||+||||+++.|++.+.+. .|.|.+.+.+.. + ....|
T Consensus 82 ~iL~~vs~~i~~Ge--~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 82 TILNGVTGMASPGE--ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred eeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 47899999999999 99999999999999999999988764 688887665421 0 00111
Q ss_pred HH---------------------HHHHHHcCCceee-------cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 461 QL---------------------RTHARRLQVPIFE-------KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 461 qL---------------------~~~~~~l~v~~~~-------~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
.+ ..+.+.+++.-.. ...+....+.-|.+|++++..+|+++|+|||+...|.
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 11 1122233432111 0123445556688999999999999999999987766
Q ss_pred HHHHHHHHHHhhhhccccEEEEEEec
Q 008816 513 IEYYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 513 ~~lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
......+..|.........+.++.+.
T Consensus 240 ~~~~~l~~~L~~l~~~g~TvI~~sH~ 265 (659)
T PLN03211 240 TAAYRLVLTLGSLAQKGKTIVTSMHQ 265 (659)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 54333333333222223444444443
No 343
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.03 E-value=2.1e-09 Score=120.27 Aligned_cols=47 Identities=26% Similarity=0.193 Sum_probs=43.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll 448 (552)
..+|++++|.+..|+ +++|+|||||||||+++.|++.+.+..|.|.+
T Consensus 20 ~~il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~ 66 (556)
T PRK11819 20 KQILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP 66 (556)
T ss_pred CeeeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 348999999999999 99999999999999999999999988888765
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=99.02 E-value=2e-09 Score=123.68 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=80.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe--------eecCCc---c--h----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--------ACDTFR---S--G---------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~--------~~D~~r---~--g---------- 457 (552)
.+|++++|.+..|+ +++|+|||||||||+++.|++.+.+..|.|.+. ..+.+. . .
T Consensus 523 ~il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~ 600 (718)
T PLN03073 523 LLFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFP 600 (718)
T ss_pred eeEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcC
Confidence 37899999999999 999999999999999999999999988877642 111100 0 0
Q ss_pred --HHHHHHHHHHHcCCc--ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 --AVEQLRTHARRLQVP--IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 --a~eqL~~~~~~l~v~--~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.++.+...+++. .. .........+..|.+|++++..+|+++|+|||+...+...
T Consensus 601 ~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s 662 (718)
T PLN03073 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA 662 (718)
T ss_pred CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 011223334445553 11 1223456677778999999999999999999997666543
No 345
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=2.8e-09 Score=108.19 Aligned_cols=112 Identities=14% Similarity=0.180 Sum_probs=74.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-----CCceEEEeeecCC---------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF--------------------- 454 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-----~ggkVll~~~D~~--------------------- 454 (552)
.+|++++|.+.+|+ +++|+|+||+||||+++.|++.+.+ ..|+|.+.+.+..
T Consensus 30 ~vl~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 30 QALKNINMMVHEKQ--VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 48999999999999 9999999999999999999998864 5677777432210
Q ss_pred ----cchHHHHHH-------------------HHHHHcCCc-----ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Q 008816 455 ----RSGAVEQLR-------------------THARRLQVP-----IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDT 505 (552)
Q Consensus 455 ----r~ga~eqL~-------------------~~~~~l~v~-----~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDt 505 (552)
.....+.+. ...+.+++. .. ............+.+|++|+..+|+++|+|+
T Consensus 108 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 187 (265)
T PRK14252 108 PNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187 (265)
T ss_pred CcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 000011111 011111210 00 0111234455568899999999999999999
Q ss_pred CCCCCChHH
Q 008816 506 AGRMQVIIE 514 (552)
Q Consensus 506 pGr~~~~~~ 514 (552)
|+...+...
T Consensus 188 Pt~gLD~~~ 196 (265)
T PRK14252 188 PTSALDPIA 196 (265)
T ss_pred CCccCCHHH
Confidence 997766543
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.02 E-value=1.4e-09 Score=122.68 Aligned_cols=111 Identities=19% Similarity=0.127 Sum_probs=76.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE-----------EeeecCCc--------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTFR-------------- 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl-----------l~~~D~~r-------------- 455 (552)
.+|++++ .+.+|+ +++|+||||+||||+++.|++.+.++.|+|. +.+.|+..
T Consensus 88 ~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 88 FKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred eeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 4688888 788999 9999999999999999999999999999986 44433210
Q ss_pred -chH------------HHHH---------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 456 -SGA------------VEQL---------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 456 -~ga------------~eqL---------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
+.. .+.+ ..+.+.+++.... .....+..+..+.+|++|+..+++++|+|||+...+
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD 244 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 000 0101 1122233433211 112344556668999999999999999999997766
Q ss_pred hHH
Q 008816 512 IIE 514 (552)
Q Consensus 512 ~~~ 514 (552)
...
T Consensus 245 ~~~ 247 (590)
T PRK13409 245 IRQ 247 (590)
T ss_pred HHH
Confidence 554
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=99.02 E-value=1.6e-09 Score=122.13 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=77.4
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe------eecCC---cchHHHHH----------
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA------ACDTF---RSGAVEQL---------- 462 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~------~~D~~---r~ga~eqL---------- 462 (552)
.|+++++.+..|+ +++|+||||+||||+++.|++.+.+..|.|.+. ..+.. .....+.+
T Consensus 354 ~l~~~s~~i~~Ge--iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 431 (590)
T PRK13409 354 SLEVEGGEIYEGE--VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSS 431 (590)
T ss_pred EEEecceEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChH
Confidence 3678889999999 999999999999999999999999998888642 11210 11111111
Q ss_pred ---HHHHHHcCCcee-e-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHH
Q 008816 463 ---RTHARRLQVPIF-E-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYY 516 (552)
Q Consensus 463 ---~~~~~~l~v~~~-~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm 516 (552)
..+.+.+++.-. . .....+..+..|.+|++|+..+++++|+|||+...+.....
T Consensus 432 ~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~ 490 (590)
T PRK13409 432 YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRL 490 (590)
T ss_pred HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 122233343211 1 11234556667899999999999999999999766554433
No 348
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.02 E-value=1.6e-09 Score=121.15 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=78.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE--------eeecC---C-cchHHHHH------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM--------AACDT---F-RSGAVEQL------ 462 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll--------~~~D~---~-r~ga~eqL------ 462 (552)
.+|++++|.+..|+ +++|+||||||||||++.|++.+.+..|.|.+ +..+. + .....+.+
T Consensus 336 ~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 413 (552)
T TIGR03719 336 LLIDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDI 413 (552)
T ss_pred eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccc
Confidence 48999999999999 99999999999999999999999888887755 22221 1 01122211
Q ss_pred ----------HHHHHHcCCce--ee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 463 ----------RTHARRLQVPI--FE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 463 ----------~~~~~~l~v~~--~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+.+.+++.- .. .....+.....+.+|++++..+|+++|+|||+...+...
T Consensus 414 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~ 478 (552)
T TIGR03719 414 IQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478 (552)
T ss_pred cccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 12233445421 11 122345566668999999999999999999997665543
No 349
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.02 E-value=1.2e-09 Score=112.13 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=83.5
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHH-------------
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARR------------- 468 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~------------- 468 (552)
-+.+++|.+..|+ +.+|.|.+|||||||+++|.++..+..|+|++.+.|+.+..+.+ |+.+.++
T Consensus 43 Gv~~~sl~v~~Ge--IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~-Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 43 GVNDASLDVEEGE--IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAE-LRELRRKKISMVFQSFALLP 119 (386)
T ss_pred eeccceeeecCCe--EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHH-HHHHHhhhhhhhhhhhcccc
Confidence 4578999999999 99999999999999999999999999999999999987665433 2222111
Q ss_pred --------------------------------cCCceeecCCC--CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH-
Q 008816 469 --------------------------------LQVPIFEKGYE--KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII- 513 (552)
Q Consensus 469 --------------------------------l~v~~~~~~~~--~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~- 513 (552)
.|+.-|...|. ....--.|..+++|+..++|++|+|+|-...++-
T Consensus 120 hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI 199 (386)
T COG4175 120 HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI 199 (386)
T ss_pred chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH
Confidence 11111111111 1111122789999999999999999998765542
Q ss_pred --HHHHHHHHHh
Q 008816 514 --EYYLFLLHIY 523 (552)
Q Consensus 514 --~lm~eL~kl~ 523 (552)
++-.+|-+|.
T Consensus 200 R~~mQdeLl~Lq 211 (386)
T COG4175 200 RTEMQDELLELQ 211 (386)
T ss_pred HHHHHHHHHHHH
Confidence 3334444443
No 350
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.02 E-value=1.5e-09 Score=133.93 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=84.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+++|+ .|+|||++|+||||++..|.+++.+..|+|.+.+.|+...+
T Consensus 1300 ~vL~~is~~I~~Ge--kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957 1300 LVLRHINVTIHGGE--KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred ccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHH
Confidence 48999999999999 99999999999999999999999999999999888754211
Q ss_pred ---------HHHHHHHHHHHcC-------------CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 ---------AVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 ---------a~eqL~~~~~~l~-------------v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+++....+..+ -.+-+.+......+..+.+|+||+..+++++|+|||+..-|.+.
T Consensus 1378 ~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1378 MNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred HHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 1122222122111 11222334556677778999999999999999999997766543
No 351
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.01 E-value=1.5e-09 Score=120.34 Aligned_cols=121 Identities=18% Similarity=0.077 Sum_probs=86.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE--------eeecCCc----chH---------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM--------AACDTFR----SGA--------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll--------~~~D~~r----~ga--------- 458 (552)
..++++++|.+..|. .|+||||||+||||+++.|++.+.+..|.|.+ .+++.-. ...
T Consensus 335 ~~l~~~~s~~i~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~ 412 (530)
T COG0488 335 RLLLKDLSFRIDRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFP 412 (530)
T ss_pred ceeecCceEEecCCC--EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCc
Confidence 357889999999999 99999999999999999999988877665543 3333210 011
Q ss_pred ---HHHHHHHHHHcCCcee---ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 459 ---VEQLRTHARRLQVPIF---EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 459 ---~eqL~~~~~~l~v~~~---~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
...++.+..+++.+-- ......+..+.+|.+++..+...++++|+|+|+ +|.+...++.|....
T Consensus 413 ~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT-NhLDi~s~~aLe~aL 482 (530)
T COG0488 413 DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT-NHLDIESLEALEEAL 482 (530)
T ss_pred cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC-ccCCHHHHHHHHHHH
Confidence 2233444444443311 111234456667889999999999999999999 788888888888765
No 352
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.01 E-value=1.2e-09 Score=112.58 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=83.9
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-h----CCceEEEeeecCCcchHH--------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-Q----HKVSVMMAACDTFRSGAV-------------- 459 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-~----~ggkVll~~~D~~r~ga~-------------- 459 (552)
.+.++++|+|.+.+|+ +++|||.+||||||++..|.+++. + .+|+|.+.+.|.++....
T Consensus 17 ~v~av~~vs~~i~~GE--~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIf 94 (316)
T COG0444 17 VVKAVDGVSFELKKGE--ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94 (316)
T ss_pred cEEEEeceeEEEcCCc--EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEE
Confidence 4678999999999999 999999999999999999999997 3 467888888876532211
Q ss_pred ------------------HHHHHH----------------HHHcCCceeec-----CCCCCHHHHHHHHHHHHHhCCCCE
Q 008816 460 ------------------EQLRTH----------------ARRLQVPIFEK-----GYEKDPAIVAKEAIQEATRNGSDV 500 (552)
Q Consensus 460 ------------------eqL~~~----------------~~~l~v~~~~~-----~~~~dp~~iar~aIa~a~~~~~Dv 500 (552)
|-++.| .+.++++--.. .....-....|.+|+.|+..+|++
T Consensus 95 Q~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 95 QDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred cCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE
Confidence 111111 11223331110 011122233478899999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHhh
Q 008816 501 VLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 501 VIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
||.|||+...|-....+.|..|..
T Consensus 175 lIADEPTTALDvt~QaqIl~Ll~~ 198 (316)
T COG0444 175 LIADEPTTALDVTVQAQILDLLKE 198 (316)
T ss_pred EEeCCCcchhhHHHHHHHHHHHHH
Confidence 999999987766544444444433
No 353
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.01 E-value=2e-09 Score=120.48 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=80.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe--------eecC--Cc--chHHHHH------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--------ACDT--FR--SGAVEQL------ 462 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~--------~~D~--~r--~ga~eqL------ 462 (552)
.+|++++|.+..|+ +++|+|+|||||||+++.|++.+.+..|+|.+. ..+. +. ....+.+
T Consensus 338 ~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~ 415 (556)
T PRK11819 338 LLIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDI 415 (556)
T ss_pred eeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhccc
Confidence 48999999999999 999999999999999999999999888887652 1121 10 0112211
Q ss_pred ----------HHHHHHcCCce--ee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHH
Q 008816 463 ----------RTHARRLQVPI--FE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLH 521 (552)
Q Consensus 463 ----------~~~~~~l~v~~--~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~k 521 (552)
+.+.+.+++.- .. ...........+.+|++|+..+|+++|+|||+...+.. ....|.+
T Consensus 416 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~-~~~~l~~ 486 (556)
T PRK11819 416 IKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVE-TLRALEE 486 (556)
T ss_pred ccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH-HHHHHHH
Confidence 12233344421 11 12234556666899999999999999999999766543 3333333
No 354
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.00 E-value=1.3e-09 Score=119.72 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=88.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC----CceEEEeeecCCcchH-----------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----KVSVMMAACDTFRSGA----------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~----ggkVll~~~D~~r~ga----------------- 458 (552)
..++++|+|.+.+|+ +++|||.+||||||++..|-+++... +|+|++.+.|......
T Consensus 22 ~~~v~~vsf~v~~GE--~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~ 99 (539)
T COG1123 22 VPAVRDVSFEVEPGE--ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQD 99 (539)
T ss_pred eeeeecceEEecCCc--EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecC
Confidence 568999999999999 99999999999999999999999877 7999988776431111
Q ss_pred -----------HHHHH-------------------HHHHHcCCceeecC--C--CCCHHHHHHHHHHHHHhCCCCEEEEe
Q 008816 459 -----------VEQLR-------------------THARRLQVPIFEKG--Y--EKDPAIVAKEAIQEATRNGSDVVLVD 504 (552)
Q Consensus 459 -----------~eqL~-------------------~~~~~l~v~~~~~~--~--~~dp~~iar~aIa~a~~~~~DvVIID 504 (552)
-.|+. .+.+.++++--... | ...-....|..|++|+..+|+++|.|
T Consensus 100 p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaD 179 (539)
T COG1123 100 PMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIAD 179 (539)
T ss_pred chhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEEC
Confidence 11211 12223344422211 2 12334445889999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHhhhh
Q 008816 505 TAGRMQVIIEYYLFLLHIYLHT 526 (552)
Q Consensus 505 tpGr~~~~~~lm~eL~kl~~~~ 526 (552)
||+...+.....+.|.-|....
T Consensus 180 EPTTaLDvt~q~qIL~llk~l~ 201 (539)
T COG1123 180 EPTTALDVTTQAQILDLLKDLQ 201 (539)
T ss_pred CCccccCHHHHHHHHHHHHHHH
Confidence 9998887766555555555443
No 355
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.99 E-value=6e-09 Score=98.62 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=50.5
Q ss_pred CcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 398 ~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
....+|++++|.+.+|+ .|+|+||+||||||+++.+|.+..++.|.+++-+.|..
T Consensus 14 ~~a~il~~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs 68 (223)
T COG4619 14 GDAKILNNISLSVRAGE--FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68 (223)
T ss_pred CCCeeecceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccc
Confidence 45568999999999999 99999999999999999999999999999999888753
No 356
>PTZ00243 ABC transporter; Provisional
Probab=98.99 E-value=1.9e-09 Score=133.19 Aligned_cols=110 Identities=19% Similarity=0.121 Sum_probs=82.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA---------------------- 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga---------------------- 458 (552)
.+|++++|.+++|+ .|+|||++|+||||++..|.+++.+.+|+|.|.+.|+...+.
T Consensus 1324 ~vL~~vsf~I~~Ge--kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1324 LVLRGVSFRIAPRE--KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred ceeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 38999999999999 999999999999999999999999999999999888643211
Q ss_pred ----------HHHHHHHHHHcCC-------------ceeecCCCCCHHHHHHHHHHHHHhCC-CCEEEEeCCCCCCCh
Q 008816 459 ----------VEQLRTHARRLQV-------------PIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQVI 512 (552)
Q Consensus 459 ----------~eqL~~~~~~l~v-------------~~~~~~~~~dp~~iar~aIa~a~~~~-~DvVIIDtpGr~~~~ 512 (552)
.+++...++..++ .+-+.+......+..+.+|++|+..+ +.++|+|||+...|.
T Consensus 1402 eNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~ 1479 (1560)
T PTZ00243 1402 QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP 1479 (1560)
T ss_pred HHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCH
Confidence 1222222222221 12223344566777789999999985 899999999976554
No 357
>PLN03073 ABC transporter F family; Provisional
Probab=98.98 E-value=3.3e-09 Score=121.92 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=43.5
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH---hhCCceEEEeeec
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL---LQHKVSVMMAACD 452 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l---~~~ggkVll~~~D 452 (552)
.+|++++|.+..|+ .++|||+||+|||||++.|++.. .+.+++|.++..+
T Consensus 191 ~ll~~isl~i~~Ge--~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 191 DLIVDASVTLAFGR--HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred EEEECCEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 48999999999999 99999999999999999999753 4677888876554
No 358
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.98 E-value=4.1e-09 Score=109.32 Aligned_cols=114 Identities=21% Similarity=0.177 Sum_probs=73.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch---HHH--H--HHHHHHHcCCce
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---AVE--Q--LRTHARRLQVPI 473 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---a~e--q--L~~~~~~l~v~~ 473 (552)
++++++++.... +.+|+|+|++|+||||++..|+..+...|.+|.++++|+.... ++. . +......-++.+
T Consensus 22 ~~~~~~~~~~~~--~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (300)
T TIGR00750 22 QLLDRIMPYTGN--AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFI 99 (300)
T ss_pred HHHHhCCcccCC--ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCcee
Confidence 345555554444 4599999999999999999999999999999999999976542 211 1 111111112222
Q ss_pred eecC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHH
Q 008816 474 FEKG---YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYY 516 (552)
Q Consensus 474 ~~~~---~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm 516 (552)
.... .........+.++......+||+|||||||..+.....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i~ 145 (300)
T TIGR00750 100 RSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQSEVDIA 145 (300)
T ss_pred eecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHHH
Confidence 1111 111223334556666666899999999999887665443
No 359
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.98 E-value=4.2e-09 Score=101.77 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=75.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH-----------------HHH-
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA-----------------VEQ- 461 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga-----------------~eq- 461 (552)
..+++++++.+..|+ .++++||+||||||+++.+|++..+..|+|.+.+..+--+++ ++.
T Consensus 18 ~~~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNv 95 (259)
T COG4525 18 RSALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNV 95 (259)
T ss_pred hhhhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHH
Confidence 457889999999999 999999999999999999999999999999987764321111 110
Q ss_pred -------------HH----HHHHHcCCceeecCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 462 -------------LR----THARRLQVPIFEKGY--EKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 462 -------------L~----~~~~~l~v~~~~~~~--~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
-+ +....+|+.-+...| ..+-....|..|++|+.-+|+++++|+|-.
T Consensus 96 afgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfg 161 (259)
T COG4525 96 AFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG 161 (259)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchh
Confidence 01 111222333322211 222334457899999999999999999963
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.98 E-value=3.3e-09 Score=130.67 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=82.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+++|+ .|+|||++|+||||++..|.+++. ..|+|.|.+.|+.+.+
T Consensus 1233 ~vL~~is~~I~~Ge--kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR 1309 (1490)
T TIGR01271 1233 AVLQDLSFSVEGGQ--RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR 1309 (1490)
T ss_pred ceeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHH
Confidence 58999999999999 999999999999999999999986 7899999888754221
Q ss_pred ---------HHHHHHHHHHHcC-------------CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 ---------AVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 ---------a~eqL~~~~~~l~-------------v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+++....+..+ ..+-+.|......+..+.+|++|+..+++++|+|||+..-|.+.
T Consensus 1310 ~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~T 1388 (1490)
T TIGR01271 1310 KNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT 1388 (1490)
T ss_pred HHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence 1122222222221 12222334456677778999999999999999999997665543
No 361
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.97 E-value=6.8e-09 Score=97.64 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=82.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee--cCCcchHHHHHHHHHHHcCCceee--
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--DTFRSGAVEQLRTHARRLQVPIFE-- 475 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~--D~~r~ga~eqL~~~~~~l~v~~~~-- 475 (552)
..+|.||++.-+.|+ .++++||+|+||||+++.|.-+-.+.+|...|++. |..+...-.+.+.+.+.+|+-+..
T Consensus 15 ~q~lfdi~l~~~~ge--tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~ 92 (242)
T COG4161 15 HQALFDITLDCPEGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92 (242)
T ss_pred chheeeeeecCCCCC--EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence 456788999999999 99999999999999999999888888888777643 333332223333333332221100
Q ss_pred ------------------cCCC---------------------------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 476 ------------------KGYE---------------------------KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 476 ------------------~~~~---------------------------~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
.+.. ....+-.|.||++|+...|+++++|+|+...
T Consensus 93 lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaal 172 (242)
T COG4161 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCccccc
Confidence 0000 0111222789999999999999999999665
Q ss_pred ChHHHHHHHHHHhhhhcc
Q 008816 511 VIIEYYLFLLHIYLHTVC 528 (552)
Q Consensus 511 ~~~~lm~eL~kl~~~~~~ 528 (552)
++ +.-..+-+|+.....
T Consensus 173 dp-eitaqvv~iikel~~ 189 (242)
T COG4161 173 DP-EITAQIVSIIKELAE 189 (242)
T ss_pred CH-HHHHHHHHHHHHHHh
Confidence 54 444444444444333
No 362
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.97 E-value=4.4e-09 Score=120.10 Aligned_cols=119 Identities=9% Similarity=0.064 Sum_probs=83.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE--------eeecCC--cch-------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM--------AACDTF--RSG------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll--------~~~D~~--r~g------------- 457 (552)
.++++++|.+++|+ +++|+||||+||||+++.|++++.+.+|.|.+ +..+++ ...
T Consensus 466 ~il~~isl~i~~Ge--~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 543 (659)
T TIGR00954 466 VLIESLSFEVPSGN--HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543 (659)
T ss_pred eeeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhh
Confidence 58999999999999 99999999999999999999998888886643 333322 000
Q ss_pred ------HHHHHHHHHHHcCCcee-ec----------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHH
Q 008816 458 ------AVEQLRTHARRLQVPIF-EK----------GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLL 520 (552)
Q Consensus 458 ------a~eqL~~~~~~l~v~~~-~~----------~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~ 520 (552)
..+.+....+.+++.-+ .. +......+..|.+|++|+..+|+++|+|||+...+.. ..+.+.
T Consensus 544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~-~~~~l~ 622 (659)
T TIGR00954 544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD-VEGYMY 622 (659)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH-HHHHHH
Confidence 11233333444444321 11 1235566777899999999999999999999766554 333444
Q ss_pred HH
Q 008816 521 HI 522 (552)
Q Consensus 521 kl 522 (552)
++
T Consensus 623 ~~ 624 (659)
T TIGR00954 623 RL 624 (659)
T ss_pred HH
Confidence 43
No 363
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.97 E-value=2.6e-09 Score=133.03 Aligned_cols=147 Identities=16% Similarity=0.089 Sum_probs=93.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------------------chH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------------------SGA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------------------~ga 458 (552)
..++++++|.+.+|+ +++|+||||+|||||++.|++.+.++.|.|.+.+.++.+ ...
T Consensus 1952 ~~aL~~ISf~I~~GE--i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGE--CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCc--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCH
Confidence 358999999999999 999999999999999999999999999999998776521 011
Q ss_pred HHHHHHHHHH------------------cCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHH
Q 008816 459 VEQLRTHARR------------------LQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLF 518 (552)
Q Consensus 459 ~eqL~~~~~~------------------l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~e 518 (552)
.|.+..++.. +++.-+.. ..........|.++++|+..+|+++|+|||+...|.... +.
T Consensus 2030 ~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr-~~ 2108 (2272)
T TIGR01257 2030 REHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR-RM 2108 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH-HH
Confidence 2222222211 12111000 011223334478899999999999999999977665443 33
Q ss_pred HHHHhhhhccccEEEEEEecCcccHHHHHHH
Q 008816 519 LLHIYLHTVCEHFVNIITFRGMWSFDCLKRK 549 (552)
Q Consensus 519 L~kl~~~~~~~~~~~ii~~~~~f~~~~l~~~ 549 (552)
+-+++..........++....+=....||++
T Consensus 2109 l~~lL~~l~~~g~TIILtTH~mee~e~lcDr 2139 (2272)
T TIGR01257 2109 LWNTIVSIIREGRAVVLTSHSMEECEALCTR 2139 (2272)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 3333222111233344444555455555543
No 364
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.97 E-value=2.5e-09 Score=102.31 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=47.1
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
..++++.++|.+..|+ .++|+|.||+||||++++|++...+.+|++++.+..
T Consensus 25 ~~~AV~~vSFtL~~~Q--TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~ 76 (267)
T COG4167 25 TVEAVKPVSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHP 76 (267)
T ss_pred hhhcccceEEEecCCc--EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcc
Confidence 3456778999999999 999999999999999999999999999999987654
No 365
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.96 E-value=3.1e-09 Score=132.28 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=80.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.++++++|.+.+|+ +++|+|+||+||||+++.|+|.+.+..|+|.+.+.|+.+. ...
T Consensus 944 ~aL~~lsl~I~~Ge--i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 944 PAVDRLNITFYENQ--ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred eEEEeeEEEEcCCc--EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 48899999999999 9999999999999999999999999999999887765210 011
Q ss_pred HHHHH------------------HHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 460 EQLRT------------------HARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 460 eqL~~------------------~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
+.+.. +.+.+++.-.. ...........|.+|++|+..+++++|+|||+...|....
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr 1097 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR 1097 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 11211 11222222110 0112333444578999999999999999999977665443
No 366
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.96 E-value=4.6e-09 Score=98.09 Aligned_cols=122 Identities=21% Similarity=0.165 Sum_probs=73.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---HHH----HHHHHHHcCCceeecC---CCCCHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA---VEQ----LRTHARRLQVPIFEKG---YEKDPAIVA 486 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga---~eq----L~~~~~~l~v~~~~~~---~~~dp~~ia 486 (552)
+++++|++|+||||++.+|+.++.+.+++|.++++|+..... +.. +.......++.+.... ....+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence 478999999999999999999999999999999999743321 110 1111111122111111 111223334
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEecCcccHHHHHH
Q 008816 487 KEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFRGMWSFDCLKR 548 (552)
Q Consensus 487 r~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~~~f~~~~l~~ 548 (552)
..++..+...+||+|||||||+.+.... . ....+...++..++..|.+-|+.
T Consensus 81 ~~~~~~~~~~~~D~iiIDtaG~~~~~~~-~---------~~~Ad~~ivv~tpe~~D~y~~~k 132 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEVD-I---------ASMADTTVVVMAPGAGDDIQAIK 132 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCccChhhhh-H---------HHhCCEEEEEECCCchhHHHHhh
Confidence 5566666567899999999997643322 1 12234555666666666665554
No 367
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.96 E-value=5.1e-09 Score=117.15 Aligned_cols=46 Identities=26% Similarity=0.222 Sum_probs=42.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll 448 (552)
.+|++++|.+..|+ +++|+|+||||||||++.|++.+.+..|.|.+
T Consensus 19 ~il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~ 64 (552)
T TIGR03719 19 EILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP 64 (552)
T ss_pred eeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 48899999999999 99999999999999999999999888887765
No 368
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.93 E-value=5.3e-09 Score=128.41 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=45.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~ 449 (552)
..+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|.|.+.
T Consensus 398 ~~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~ 445 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGK--TYAFVGESGCGKSTILKLIERLYDPTEGDIIIN 445 (1466)
T ss_pred CceeccceEEEcCCC--EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEe
Confidence 358999999999999 999999999999999999999999999999994
No 369
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3.4e-09 Score=113.60 Aligned_cols=124 Identities=22% Similarity=0.255 Sum_probs=87.7
Q ss_pred CcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc----------------------
Q 008816 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------------------- 455 (552)
Q Consensus 398 ~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------------------- 455 (552)
....+|+||+|.+.+|+ ++++|||+|+||||+++.|-+++.-+.|.|.+.+.|+..
T Consensus 549 p~k~vl~disF~v~pGk--tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd 626 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGK--TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND 626 (790)
T ss_pred CCCceeecceEEecCCc--EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc
Confidence 34568999999999999 999999999999999999999999999999999988631
Q ss_pred ----------chH--------HHHHHHHHHHcCCc------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 456 ----------SGA--------VEQLRTHARRLQVP------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 456 ----------~ga--------~eqL~~~~~~l~v~------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
++| ...-..|.+.++.| +-++|......+..|.||++++...|.+|++|+|+...+
T Consensus 627 TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALD 706 (790)
T KOG0056|consen 627 TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALD 706 (790)
T ss_pred eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcC
Confidence 111 01111222333322 112222333345558999999999999999999997543
Q ss_pred h---HHHHHHHHHHh
Q 008816 512 I---IEYYLFLLHIY 523 (552)
Q Consensus 512 ~---~~lm~eL~kl~ 523 (552)
. ...-..|.++.
T Consensus 707 T~tER~IQaaL~rlc 721 (790)
T KOG0056|consen 707 TNTERAIQAALARLC 721 (790)
T ss_pred CccHHHHHHHHHHHh
Confidence 2 33444566665
No 370
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=7e-09 Score=101.41 Aligned_cols=53 Identities=25% Similarity=0.245 Sum_probs=48.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
.+++++++.+..|+ +.+|+||||+||||+++.|++.+.+.+|+|.+.+.+.-.
T Consensus 15 ~ll~~vsl~~~pGe--v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~ 67 (259)
T COG4559 15 RLLDGVSLDLRPGE--VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS 67 (259)
T ss_pred eeccCcceeccCCc--EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence 46788999999999 999999999999999999999999999999999887643
No 371
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.91 E-value=8.5e-09 Score=101.06 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=50.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g 457 (552)
.+|+++++.+..|+ ++.|+|.||+||||++..||+.+.+.+|+|.|.+.|+-+..
T Consensus 20 ~~l~~~sL~I~~g~--FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~ 74 (263)
T COG1101 20 RALNGLSLEIAEGD--FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS 74 (263)
T ss_pred HHHhcCceeecCCc--eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCC
Confidence 46778999999999 99999999999999999999999999999999999976543
No 372
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.2e-08 Score=100.88 Aligned_cols=135 Identities=17% Similarity=0.130 Sum_probs=86.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH--hhCCceEEEeeecCCcchH-------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTFRSGA------------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l--~~~ggkVll~~~D~~r~ga------------------- 458 (552)
..+|+++++.+..|+ +.+|+||||+|||||+..|++.- ....|+|++.+.|+--...
T Consensus 17 keILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~ 94 (251)
T COG0396 17 KEILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP 94 (251)
T ss_pred hhhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC
Confidence 368999999999999 99999999999999999999864 5679999999888631111
Q ss_pred -------------------------HHHHHHHHHHcCCce--eec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 459 -------------------------VEQLRTHARRLQVPI--FEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 459 -------------------------~eqL~~~~~~l~v~~--~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
..+++..++.++++- ..+ ..+-+-.+.-|.-|..++..+|+++|+|+|-..
T Consensus 95 GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSG 174 (251)
T COG0396 95 GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSG 174 (251)
T ss_pred CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcC
Confidence 122222233333321 011 011122223355566677889999999999855
Q ss_pred CChHHHHHHHHHHhhh-hccccEEEEEEe
Q 008816 510 QVIIEYYLFLLHIYLH-TVCEHFVNIITF 537 (552)
Q Consensus 510 ~~~~~lm~eL~kl~~~-~~~~~~~~ii~~ 537 (552)
. +...++.+++.+.. ......+.+|++
T Consensus 175 L-DIdalk~V~~~i~~lr~~~~~~liITH 202 (251)
T COG0396 175 L-DIDALKIVAEGINALREEGRGVLIITH 202 (251)
T ss_pred c-cHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 4 44555555554433 334445555543
No 373
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.90 E-value=9.4e-09 Score=117.21 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=82.8
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--------------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga--------------------- 458 (552)
..++++++|.+.+|+ +++|+|+||+||||+++.|++.+.+..|+|.+.+.++.....
T Consensus 21 ~~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~ 98 (648)
T PRK10535 21 VEVLKGISLDIYAGE--MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLL 98 (648)
T ss_pred eeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccC
Confidence 358999999999999 999999999999999999999999999999887766432111
Q ss_pred -----HHHHH------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 -----VEQLR------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 -----~eqL~------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+.+. .+.+.+++.-.. ........+..+.+|++|+..+|+++|+|||....|.
T Consensus 99 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~- 177 (648)
T PRK10535 99 SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDS- 177 (648)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH-
Confidence 11111 011122222110 1112344455578999999999999999999976654
Q ss_pred HHHHHHHHHh
Q 008816 514 EYYLFLLHIY 523 (552)
Q Consensus 514 ~lm~eL~kl~ 523 (552)
...+.+.+++
T Consensus 178 ~s~~~l~~ll 187 (648)
T PRK10535 178 HSGEEVMAIL 187 (648)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 374
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.87 E-value=1.2e-08 Score=115.80 Aligned_cols=137 Identities=12% Similarity=0.094 Sum_probs=87.9
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC---CceEEEeeecCCc------------------c-h
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTFR------------------S-G 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~---ggkVll~~~D~~r------------------~-g 457 (552)
..+|+++++.+++|+ +++|+||||+||||+++.|++...+. .|+|.+.+.+... . .
T Consensus 38 ~~iL~~vs~~i~~Ge--~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 38 KHLLKNVSGVAKPGE--LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred cccccCCEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 458999999999999 99999999999999999999987653 5788877654210 0 0
Q ss_pred HHHH---------------------HHHHHHHcCCceee-c--C-----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 458 AVEQ---------------------LRTHARRLQVPIFE-K--G-----YEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 458 a~eq---------------------L~~~~~~l~v~~~~-~--~-----~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
..|. .....+.+++.-.. . + .+....+..|.+|++++..+|+++++|+|+.
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 1111 11222233332110 0 1 1345556668899999999999999999998
Q ss_pred CCChHHHHHHHHHHhhhhccccEEEEEEec
Q 008816 509 MQVIIEYYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 509 ~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
..|.......+..+.........+.++.+.
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq 225 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQ 225 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 776654443333333332223333444343
No 375
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.87 E-value=9.3e-09 Score=107.81 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=63.9
Q ss_pred EEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc--------------------hHHHH------------------
Q 008816 420 FVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--------------------GAVEQ------------------ 461 (552)
Q Consensus 420 lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~--------------------ga~eq------------------ 461 (552)
|+||||||||||++.|++++.+..|+|.+.+.++... ...+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 5899999999999999999999999998876553210 01111
Q ss_pred HHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 462 LRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 462 L~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+..+.+.+++.-+.. .......+..+.+|++|+..+|+++|+|+|....+...
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~ 135 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL 135 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH
Confidence 112223334432111 12234455568999999999999999999997766543
No 376
>PLN03232 ABC transporter C family member; Provisional
Probab=98.83 E-value=1.2e-08 Score=125.85 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=80.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCc-------eEEEeeecCC-------------cchHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-------SVMMAACDTF-------------RSGAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~gg-------kVll~~~D~~-------------r~ga~e 460 (552)
.+|+|++|.+++|+ .++|+|++||||||++..|.+.+.+..| .|.++..+++ +....+
T Consensus 631 ~vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e 708 (1495)
T PLN03232 631 PTLSDINLEIPVGS--LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708 (1495)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHH
Confidence 47999999999999 9999999999999999999999988654 4566666643 111111
Q ss_pred HHHHHHHHc-------------CCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 461 QLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 461 qL~~~~~~l-------------~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
......+.. .-.+-+.|......+..|.+|+||+..++|++|+|+|....|...
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t 775 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHV 775 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 222211111 111223444567788889999999999999999999998776543
No 377
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=98.83 E-value=6.6e-08 Score=96.82 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=59.8
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHc---C-CceeecCCCCCHHHHHHHHH
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL---Q-VPIFEKGYEKDPAIVAKEAI 490 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l---~-v~~~~~~~~~dp~~iar~aI 490 (552)
++|+|.+. .||||||++..||.++...|.+|+++++|+.+... . |.++. + .+.................+
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~-~----w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 76 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLT-R----WKENALRSNTWDPACEVYAADELPLLEAAY 76 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHH-H----HHHhhccccCCCccceecCCCHHHHHHHHH
Confidence 47888866 99999999999999999999999999999976632 1 22211 1 11100011112223344555
Q ss_pred HHHHhCCCCEEEEeCCCCC
Q 008816 491 QEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 491 a~a~~~~~DvVIIDtpGr~ 509 (552)
..+...+||+|||||||..
T Consensus 77 ~~~~~~~yD~iiID~pp~~ 95 (231)
T PRK13849 77 EDAELQGFDYALADTHGGS 95 (231)
T ss_pred HHHhhCCCCEEEEeCCCCc
Confidence 5554467999999999965
No 378
>PLN03130 ABC transporter C family member; Provisional
Probab=98.83 E-value=2.1e-08 Score=124.37 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=80.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCC-ceE------EEeeecCC--c-----------chHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK-VSV------MMAACDTF--R-----------SGAVE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~g-gkV------ll~~~D~~--r-----------~ga~e 460 (552)
.+|+++++.+++|+ .++||||+||||||++..|.+.+.+.. |.| .++..+++ . +...+
T Consensus 631 ~vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e 708 (1622)
T PLN03130 631 PTLSNINLDVPVGS--LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPE 708 (1622)
T ss_pred ceeeceeEEecCCC--EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHH
Confidence 37999999999999 999999999999999999999999887 655 44555543 1 11111
Q ss_pred HHHHHHH---------Hc----CCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 461 QLRTHAR---------RL----QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 461 qL~~~~~---------~l----~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
......+ .+ ...+-+.|......+..|.+|+||+..++|++|+|+|....|...
T Consensus 709 ~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~ 775 (1622)
T PLN03130 709 RYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV 775 (1622)
T ss_pred HHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHH
Confidence 1221111 11 112223445567788889999999999999999999997766543
No 379
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.81 E-value=6.2e-08 Score=96.38 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=30.2
Q ss_pred CcccccccccccccCCCcEEEEEEcCCCCChhHHH
Q 008816 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL 432 (552)
Q Consensus 398 ~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll 432 (552)
....+|++++|.+++|+ +++|+|+|||||||++
T Consensus 6 ~~~~~l~~vsl~i~~Ge--~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 6 AREHNLKNVDVDIPRNK--LVVITGVSGSGKSSLA 38 (226)
T ss_pred chhhccccceeecCCCc--EEEEEcCCCCCHHHHH
Confidence 44568899999999999 9999999999999996
No 380
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.80 E-value=4.2e-08 Score=93.39 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=50.0
Q ss_pred HHHHHhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 389 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 389 ~L~~il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
.|.+.+++... .++++|.+-+|+ +++|||.+|+||||++++|++.+.++.|.|.+..
T Consensus 11 ~lsk~Yg~~~g---c~~vsF~l~PGe--VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~ 67 (258)
T COG4107 11 GLSKLYGPGKG---CRDVSFDLYPGE--VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRM 67 (258)
T ss_pred hhhhhhCCCcC---ccccceeecCCc--EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEc
Confidence 46677776543 468999999999 9999999999999999999999999999998865
No 381
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.79 E-value=2.7e-08 Score=122.02 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=80.3
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh---hCCceEEEeeecCC---c--c-------------hH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTF---R--S-------------GA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~---~~ggkVll~~~D~~---r--~-------------ga 458 (552)
..+|+++++.+.+|+ +++|+||||+|||||++.|++.+. +..|.|.+.+.+.. | . ..
T Consensus 776 ~~iL~~vs~~i~~Ge--~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 776 RVILNNVDGWVKPGT--LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred cEeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCH
Confidence 458999999999999 999999999999999999999886 56688888765531 0 0 01
Q ss_pred HHHHH---------------------HHHHHcCCcee-ec-----CCCCCHHHHHHHHHHHHHhCCCC-EEEEeCCCCCC
Q 008816 459 VEQLR---------------------THARRLQVPIF-EK-----GYEKDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQ 510 (552)
Q Consensus 459 ~eqL~---------------------~~~~~l~v~~~-~~-----~~~~dp~~iar~aIa~a~~~~~D-vVIIDtpGr~~ 510 (552)
.|.|. ...+.+++.-. .. +.+....+..|.+|++++..+|+ ++|+|||+...
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence 11111 11222233211 11 11355666778899999999997 99999999877
Q ss_pred ChHHHH
Q 008816 511 VIIEYY 516 (552)
Q Consensus 511 ~~~~lm 516 (552)
|.....
T Consensus 934 D~~~~~ 939 (1394)
T TIGR00956 934 DSQTAW 939 (1394)
T ss_pred CHHHHH
Confidence 765433
No 382
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.79 E-value=2.5e-08 Score=94.65 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=48.3
Q ss_pred CCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 397 ~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
.-...++++++|.++.|+ ++++-||+|+||||++++|-+.+.+++|+|++--.+
T Consensus 21 Gi~LpV~~~vslsV~aGE--CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g 74 (235)
T COG4778 21 GVRLPVLRNVSLSVNAGE--CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEG 74 (235)
T ss_pred CEEeeeeeceeEEecCcc--EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCc
Confidence 345678999999999999 999999999999999999999999999999885443
No 383
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.78 E-value=2.3e-08 Score=105.05 Aligned_cols=103 Identities=25% Similarity=0.297 Sum_probs=71.7
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---hHHH----HHHHHHHHcCCceee---cCCCCC
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---GAVE----QLRTHARRLQVPIFE---KGYEKD 481 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---ga~e----qL~~~~~~l~v~~~~---~~~~~d 481 (552)
.|.+.+|+|+|++|+||||++..|+..+...|.+|.+++.|+... |++- .+..+...-++.+.. .+....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 356789999999999999999999999998899999999998432 3321 111111111211211 122223
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 482 p~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.....++......++|+|||||+|..+....
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~ 165 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA 165 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH
Confidence 456667778777788999999999998865544
No 384
>PLN03140 ABC transporter G family member; Provisional
Probab=98.77 E-value=3.9e-08 Score=120.73 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=86.6
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh--CCceEEEeeecCC----c--c-------------hH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTF----R--S-------------GA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~--~ggkVll~~~D~~----r--~-------------ga 458 (552)
..+|+++++.+.+|+ +++|+||||+|||||++.|++.... ..|.|.+.+.+.. + . ..
T Consensus 893 ~~iL~~vs~~i~~Ge--l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 893 LQLLREVTGAFRPGV--LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred ceEeeCcEEEEECCe--EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 368999999999999 9999999999999999999997642 3577777654321 0 0 01
Q ss_pred HHHHH---------------------HHHHHcCCceee-cC------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 459 VEQLR---------------------THARRLQVPIFE-KG------YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 459 ~eqL~---------------------~~~~~l~v~~~~-~~------~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
.|.|. ...+.+++.-.. .. .+....+..|.+|++++..+|+++|+|||+...
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 11111 111222332111 10 234556677899999999999999999999887
Q ss_pred ChHHHHHHHHHHhhhhccccEEEEEEec
Q 008816 511 VIIEYYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 511 ~~~~lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
|.......+..|.........+.++.+.
T Consensus 1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq 1078 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQ 1078 (1470)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 7654433333333322223344444444
No 385
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.77 E-value=2.9e-08 Score=122.51 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=78.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee------ecC--CcchHHHH-----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA------CDT--FRSGAVEQ----------- 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~------~D~--~r~ga~eq----------- 461 (552)
.+|++++|.+++|+ +++|+|||||||||+++.|++.+.+..|.|.+.+ .++ |.....+.
T Consensus 440 ~~l~~i~l~i~~G~--~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 440 PVLKNISFKLEKGQ--LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred cceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 47999999999999 9999999999999999999999999888776532 222 11001110
Q ss_pred ----HH-----HHHHHcC----CceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 462 ----LR-----THARRLQ----VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 462 ----L~-----~~~~~l~----v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
++ .....+. ..+-+.+......+..|.+|++|+..+++++|+|+|....|...
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~ 583 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 00 0111110 01112234566778889999999999999999999997766543
No 386
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.76 E-value=9.7e-09 Score=99.32 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=49.7
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee-ecCCcc
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA-CDTFRS 456 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~-~D~~r~ 456 (552)
...++++++|.+..|+ .-++|||||+||||++-.|.+...+..|+|++.+ .|+.+.
T Consensus 17 GF~Aln~ls~~v~~Ge--lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 17 GFKALNDLSFSVDPGE--LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceeeeeeeEEEecCCe--EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccC
Confidence 3457889999999999 8899999999999999999999999999999988 776543
No 387
>PTZ00243 ABC transporter; Provisional
Probab=98.76 E-value=4.6e-08 Score=121.11 Aligned_cols=112 Identities=23% Similarity=0.223 Sum_probs=78.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE------eeecCC--cchHHHH-----------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM------AACDTF--RSGAVEQ----------- 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll------~~~D~~--r~ga~eq----------- 461 (552)
.+|++++|.+++|+ +++|+||||+||||+++.|++.+.+..|.|.+ +..++. .....+.
T Consensus 674 ~iL~~isl~i~~G~--~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~ 751 (1560)
T PTZ00243 674 VLLRDVSVSVPRGK--LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAAR 751 (1560)
T ss_pred eeEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHH
Confidence 47999999999999 99999999999999999999999988777643 333321 1001110
Q ss_pred ---------HHHHHHHc--CCc--eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 462 ---------LRTHARRL--QVP--IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 462 ---------L~~~~~~l--~v~--~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
|....+.+ |.. +-+.+......+..|.+|++|+..+++++|+|+|....|...
T Consensus 752 ~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 752 LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 11111111 111 112344566678889999999999999999999997776543
No 388
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.72 E-value=6.2e-08 Score=114.07 Aligned_cols=147 Identities=18% Similarity=0.119 Sum_probs=101.9
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-----------------------chH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-----------------------SGA 458 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-----------------------~ga 458 (552)
+++++++.+++|+ +.++.|+||+||||++++|.|...+.+|.+.+.+.|.-. ...
T Consensus 580 Av~~ls~~V~~ge--cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGE--CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCc--eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 6789999999999 999999999999999999999999999999996666421 112
Q ss_pred HHHHHHHHHHcCCceee--------------cCCCCCHH------HHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHH
Q 008816 459 VEQLRTHARRLQVPIFE--------------KGYEKDPA------IVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLF 518 (552)
Q Consensus 459 ~eqL~~~~~~l~v~~~~--------------~~~~~dp~------~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~e 518 (552)
.|.|..+++.-|++-.. ..+...+. ..-+..++.|+..+|.+|++|+|+.+-|+ .-.+.
T Consensus 658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP-~arr~ 736 (885)
T KOG0059|consen 658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDP-KARRH 736 (885)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCH-HHHHH
Confidence 34455555544443110 00000000 11145566778899999999999976655 44555
Q ss_pred HHHHhhhhccccEEEEEEecCcccHHHHHHHhh
Q 008816 519 LLHIYLHTVCEHFVNIITFRGMWSFDCLKRKEA 551 (552)
Q Consensus 519 L~kl~~~~~~~~~~~ii~~~~~f~~~~l~~~~~ 551 (552)
+=.++..........+.+..++=....||+|.|
T Consensus 737 lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 737 LWDIIARLRKNGKAIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhh
Confidence 555554433332277778899999999999865
No 389
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.71 E-value=6.4e-08 Score=102.26 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=75.5
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeec---
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK--- 476 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~--- 476 (552)
+.+++++++.+..|+ .++|||.+||||||+-..|.+++... |.|.+.+.|+.... ..+++.+.+++++-+...
T Consensus 300 ~~AVd~isl~L~~gq--TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~-~~~mrplR~~mQvVFQDPygS 375 (534)
T COG4172 300 LRAVDGISLTLRRGQ--TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS-RKEMRPLRRRMQVVFQDPYGS 375 (534)
T ss_pred eEEeccceeEecCCC--eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC-hhhhhhhhhhceEEEeCCCCC
Confidence 456789999999999 99999999999999999999988877 88998887764221 111222222221111100
Q ss_pred ------------------------------------CCCCCH------------HHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 477 ------------------------------------GYEKDP------------AIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 477 ------------------------------------~~~~dp------------~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
..+.|| .+..|.||++|+.-+|.+|++|+|+.
T Consensus 376 LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTS 455 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTS 455 (534)
T ss_pred CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCch
Confidence 001122 22337899999999999999999997
Q ss_pred CCCh
Q 008816 509 MQVI 512 (552)
Q Consensus 509 ~~~~ 512 (552)
..+-
T Consensus 456 ALD~ 459 (534)
T COG4172 456 ALDR 459 (534)
T ss_pred HhhH
Confidence 6554
No 390
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.71 E-value=2.7e-07 Score=90.03 Aligned_cols=129 Identities=14% Similarity=0.031 Sum_probs=68.0
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCC-------------------------ceEEEeeecC--C-cc
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK-------------------------VSVMMAACDT--F-RS 456 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~g-------------------------gkVll~~~D~--~-r~ 456 (552)
++++.+.+| +++|+||||+||||++..|++++.+.. .+|.++-.+. + ..
T Consensus 15 ~~~l~~~~g---~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~ 91 (197)
T cd03278 15 KTTIPFPPG---LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI 91 (197)
T ss_pred CeeeecCCC---cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence 355666554 899999999999999999998764321 1222222221 1 01
Q ss_pred hHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh----CCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEE
Q 008816 457 GAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR----NGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFV 532 (552)
Q Consensus 457 ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~----~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~ 532 (552)
...+.+..+.+..+. ..............+.+|++++. ..++++|+|||....+.......+..|..... ...+
T Consensus 92 ~~~~~~~~~l~~~~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~ti 169 (197)
T cd03278 92 ISQGDVSEIIEAPGK-KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQF 169 (197)
T ss_pred EehhhHHHHHhCCCc-cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEE
Confidence 111222222222110 00111223444555777877764 56799999999976655443333333332222 2344
Q ss_pred EEEEec
Q 008816 533 NIITFR 538 (552)
Q Consensus 533 ~ii~~~ 538 (552)
.++++.
T Consensus 170 IiitH~ 175 (197)
T cd03278 170 IVITHR 175 (197)
T ss_pred EEEECC
Confidence 444444
No 391
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.70 E-value=5.4e-08 Score=120.44 Aligned_cols=113 Identities=18% Similarity=0.117 Sum_probs=79.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe------eecCC--cchHH-----------HH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA------ACDTF--RSGAV-----------EQ 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~------~~D~~--r~ga~-----------eq 461 (552)
.+|++++|.+++|+ +++|+|||||||||+++.|++.+.+..|.|.+. ..+++ ..... +.
T Consensus 652 ~~l~~isl~i~~G~--~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 729 (1522)
T TIGR00957 652 PTLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKY 729 (1522)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHH
Confidence 37899999999999 999999999999999999999999988877543 33321 10001 11
Q ss_pred HHHHHH---------Hc--CC--ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 462 LRTHAR---------RL--QV--PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 462 L~~~~~---------~l--~v--~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
.....+ .+ |. .+-+.+......+..|.+|++|+..+++++|+|+|....|....
T Consensus 730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~ 796 (1522)
T TIGR00957 730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796 (1522)
T ss_pred HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 111111 11 00 11223445666788899999999999999999999977766443
No 392
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=98.70 E-value=5.6e-08 Score=96.76 Aligned_cols=86 Identities=27% Similarity=0.354 Sum_probs=63.2
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHc---C-----CceeecCCCCCHHHHH
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL---Q-----VPIFEKGYEKDPAIVA 486 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l---~-----v~~~~~~~~~dp~~ia 486 (552)
.+|.|+-+ .|+||||++..||..+...|.+|.|+++|+.++-+ .|.++- + +.++ ..+-....
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~-----~W~~~a~~~~~~~~~~~V~----~~~e~~~l 72 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA-----KWAENAQRPGAWPDRIEVY----EADELTIL 72 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH-----HHHHhccccCCCCCCeeEE----eccchhhH
Confidence 37777754 99999999999999999999999999999987633 344332 1 1222 22334455
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 487 KEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 487 r~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
..++..+....||+||||++|...
T Consensus 73 ~~~~e~a~~~~~d~VlvDleG~as 96 (231)
T PF07015_consen 73 EDAYEAAEASGFDFVLVDLEGGAS 96 (231)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCc
Confidence 667777666789999999998543
No 393
>PHA02518 ParA-like protein; Provisional
Probab=98.70 E-value=2.2e-07 Score=90.14 Aligned_cols=84 Identities=21% Similarity=0.298 Sum_probs=56.3
Q ss_pred EEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHc--CCceeecCCCCCHHHHHHHHHHHH
Q 008816 417 VVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--QVPIFEKGYEKDPAIVAKEAIQEA 493 (552)
Q Consensus 417 vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l--~v~~~~~~~~~dp~~iar~aIa~a 493 (552)
+|+|++. .||||||++..||.++...|.+|+++++|+++.... |.... +.+++... .. .......+..
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~-----~~~~~~~~~~~i~~~-~~--~~~~~~~l~~- 72 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTD-----WAEAREEGEPLIPVV-RM--GKSIRADLPK- 72 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHH-----HHHhcccCCCCCchh-hc--cHHHHHHHHH-
Confidence 7888877 899999999999999999999999999999765432 22211 11111110 00 0112233333
Q ss_pred HhCCCCEEEEeCCCCC
Q 008816 494 TRNGSDVVLVDTAGRM 509 (552)
Q Consensus 494 ~~~~~DvVIIDtpGr~ 509 (552)
+...||+|||||||..
T Consensus 73 ~~~~~d~viiD~p~~~ 88 (211)
T PHA02518 73 VASGYDYVVVDGAPQD 88 (211)
T ss_pred HhccCCEEEEeCCCCc
Confidence 3578999999999864
No 394
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.68 E-value=2e-07 Score=95.35 Aligned_cols=103 Identities=25% Similarity=0.264 Sum_probs=73.3
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---chHHH----HHHHHHHHcCCceeecCCCCCH--
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAVE----QLRTHARRLQVPIFEKGYEKDP-- 482 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---~ga~e----qL~~~~~~l~v~~~~~~~~~dp-- 482 (552)
.|.+.+|+|.|++|+||||++-.|...+...|.+|.+++.|+-. .|++- .+..+....++.+.+....-..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 57778999999999999999999999999999999999999753 33321 2222333334444333222222
Q ss_pred -HHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 483 -AIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 483 -~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..-.++++......+||+|||.|-|..|.+..
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~ 160 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVD 160 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH
Confidence 33335666666678999999999999886644
No 395
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=8.7e-08 Score=101.71 Aligned_cols=114 Identities=20% Similarity=0.199 Sum_probs=81.1
Q ss_pred CCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc--------------------
Q 008816 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS-------------------- 456 (552)
Q Consensus 397 ~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~-------------------- 456 (552)
...-.+|++++|.++.|+ .+++||+.|+||||+++.|-+++..+.|.|.+.+.|+.-.
T Consensus 273 ~~~r~iL~~isf~i~~g~--tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFN 350 (497)
T COG5265 273 DPRRPILNGISFTIPLGK--TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN 350 (497)
T ss_pred cccchhhcCccccccCcc--EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehh
Confidence 344568899999999999 9999999999999999999999999999999998886411
Q ss_pred ------------hH--------H--HHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 457 ------------GA--------V--EQLRTHARRL----QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 457 ------------ga--------~--eqL~~~~~~l----~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
.+ . .|+..+.+.+ ...+-+.+......+..|.||++++..+|.++++|||+...
T Consensus 351 Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsal 430 (497)
T COG5265 351 DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSAL 430 (497)
T ss_pred hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHh
Confidence 00 0 0111111111 11111222223334455899999999999999999999765
Q ss_pred Ch
Q 008816 511 VI 512 (552)
Q Consensus 511 ~~ 512 (552)
+.
T Consensus 431 dt 432 (497)
T COG5265 431 DT 432 (497)
T ss_pred hh
Confidence 44
No 396
>PLN03140 ABC transporter G family member; Provisional
Probab=98.67 E-value=4.7e-08 Score=120.02 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=47.2
Q ss_pred CcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC---CceEEEeeec
Q 008816 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACD 452 (552)
Q Consensus 398 ~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~---ggkVll~~~D 452 (552)
....+|+++++.+++|+ +++|+||||||||||++.|++.+.+. .|+|.+.+.+
T Consensus 176 ~~~~IL~~vs~~i~~Ge--~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~ 231 (1470)
T PLN03140 176 TKLTILKDASGIIKPSR--MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYR 231 (1470)
T ss_pred ccceeccCCeEEEeCCe--EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEe
Confidence 45679999999999999 99999999999999999999998876 7888876654
No 397
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.66 E-value=7.2e-08 Score=97.26 Aligned_cols=103 Identities=22% Similarity=0.260 Sum_probs=67.1
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---chHH----HHHHHHHHHcCCceeecCCCCCHHH
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAV----EQLRTHARRLQVPIFEKGYEKDPAI 484 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---~ga~----eqL~~~~~~l~v~~~~~~~~~dp~~ 484 (552)
.|+.++|+|.||+|+||||++..|+..+...|.+|.+++.|+-. -|++ -.+..+...-++.+.+.........
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 35667999999999999999999999999999999999999742 2221 1223344444565555444444545
Q ss_pred HH---HHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 485 VA---KEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 485 ia---r~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
++ ++++......+||+|||-|.|..|.+..
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~ 138 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD 138 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH
Confidence 44 4566666678999999999998885543
No 398
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=98.65 E-value=3e-07 Score=86.94 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=54.7
Q ss_pred EEEEEc-CCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh
Q 008816 417 VVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (552)
Q Consensus 417 vI~lvG-~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~ 495 (552)
+|+|++ ..|+||||++..||.++...|.+|++++.|+++..... + +. . .......+..+.....
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~-~--~~----~--------~~~~~~l~~~~~~~~~ 65 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPK-M--WR----G--------PMKMGAIKQFLTDVDW 65 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchH-H--Hh----C--------cchHHHHHHHHHHhhc
Confidence 356664 49999999999999999999999999999998754221 1 10 0 0112223333333334
Q ss_pred CCCCEEEEeCCCCCC
Q 008816 496 NGSDVVLVDTAGRMQ 510 (552)
Q Consensus 496 ~~~DvVIIDtpGr~~ 510 (552)
.+||+||||+|+...
T Consensus 66 ~~yD~VIiD~pp~~~ 80 (169)
T cd02037 66 GELDYLVIDMPPGTG 80 (169)
T ss_pred CCCCEEEEeCCCCCc
Confidence 789999999999653
No 399
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.64 E-value=4.6e-07 Score=79.38 Aligned_cols=96 Identities=20% Similarity=0.166 Sum_probs=64.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~ 496 (552)
.++|+||+|+||||++..|+..+...+..+.+++++........+.. .................+..+..+...
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999988877666777777765433222111 111111122334445556667777666
Q ss_pred CCCEEEEeCCCCCCChHHHHHH
Q 008816 497 GSDVVLVDTAGRMQVIIEYYLF 518 (552)
Q Consensus 497 ~~DvVIIDtpGr~~~~~~lm~e 518 (552)
.+++|+||++++..........
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~ 99 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALL 99 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHH
Confidence 7899999999987766554433
No 400
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.64 E-value=1.6e-07 Score=99.27 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=86.8
Q ss_pred CCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-----CceEEEeeecCCcch-------------
Q 008816 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTFRSG------------- 457 (552)
Q Consensus 396 ~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-----ggkVll~~~D~~r~g------------- 457 (552)
.....+++++|+|.+..|+ ++++||.+|||||-++..|.++|... .|+|.+.+.|+.+..
T Consensus 19 ~~~~~~aVk~isf~i~~GE--tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~ 96 (534)
T COG4172 19 EGGTVEAVKGISFDIEAGE--TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIG 96 (534)
T ss_pred CCcceEeeccceeeecCCC--EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceE
Confidence 3456778999999999999 99999999999999999999988762 568888877753211
Q ss_pred ----------------------------------HHHHHHHHHHHcCCceeecCC-----CCCHHHHHHHHHHHHHhCCC
Q 008816 458 ----------------------------------AVEQLRTHARRLQVPIFEKGY-----EKDPAIVAKEAIQEATRNGS 498 (552)
Q Consensus 458 ----------------------------------a~eqL~~~~~~l~v~~~~~~~-----~~dp~~iar~aIa~a~~~~~ 498 (552)
|.+....+.+..|++--+... .....+..|.+|++|+..+|
T Consensus 97 MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P 176 (534)
T COG4172 97 MIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEP 176 (534)
T ss_pred EEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCC
Confidence 111111122333555322222 22333445889999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 499 DVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 499 DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
|++|-|+|+...+-.-..+.|.-|.
T Consensus 177 ~lLIADEPTTALDVtvQaQIL~Ll~ 201 (534)
T COG4172 177 DLLIADEPTTALDVTVQAQILDLLK 201 (534)
T ss_pred CeEeecCCcchhhhhhHHHHHHHHH
Confidence 9999999997665544444444443
No 401
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=8.2e-08 Score=103.92 Aligned_cols=134 Identities=18% Similarity=0.135 Sum_probs=77.9
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceE--EEeeecC-----------CcchHHH--------
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV--MMAACDT-----------FRSGAVE-------- 460 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkV--ll~~~D~-----------~r~ga~e-------- 460 (552)
+|.+-++.+..|+ .+++||+||+|||||++.||.. .-.+..| -+.++|+ .|...+.
T Consensus 95 LL~~a~L~L~~Gr--RYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~ 171 (582)
T KOG0062|consen 95 LLNKANLTLSRGR--RYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAG 171 (582)
T ss_pred hhcCCceeeeccc--ccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhcc
Confidence 4556677788888 8999999999999999999971 1122222 1233333 2211110
Q ss_pred -HHH-HHHHHc-CCceee----cC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEE
Q 008816 461 -QLR-THARRL-QVPIFE----KG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFV 532 (552)
Q Consensus 461 -qL~-~~~~~l-~v~~~~----~~-~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~ 532 (552)
.+. .+.+.+ ++.+-. +. ......-.+|.++++|+..+||++|+|+|+ ++.+..-+..|..-... ....+
T Consensus 172 ~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPT-NhLDv~av~WLe~yL~t--~~~T~ 248 (582)
T KOG0062|consen 172 LTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPT-NHLDVVAVAWLENYLQT--WKITS 248 (582)
T ss_pred chHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCc-ccchhHHHHHHHHHHhh--CCceE
Confidence 001 111111 222110 00 011112234889999999999999999999 66777777888764422 22455
Q ss_pred EEEEecCcc
Q 008816 533 NIITFRGMW 541 (552)
Q Consensus 533 ~ii~~~~~f 541 (552)
.+++++.-|
T Consensus 249 liVSHDr~F 257 (582)
T KOG0062|consen 249 LIVSHDRNF 257 (582)
T ss_pred EEEeccHHH
Confidence 566666554
No 402
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=98.62 E-value=2.6e-07 Score=92.77 Aligned_cols=120 Identities=19% Similarity=0.156 Sum_probs=63.7
Q ss_pred EEEEE-cCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHH---HHHHHcCCceeecCC----------CCC-
Q 008816 417 VVVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR---THARRLQVPIFEKGY----------EKD- 481 (552)
Q Consensus 417 vI~lv-G~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~---~~~~~l~v~~~~~~~----------~~d- 481 (552)
+|++. |..|+||||++..||-.|...|.+|.+++.|++....-..+. .+.+.-++++....+ ...
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~gi~Lp~p~~~~L~~~~~~v~~~~ 81 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRDGIELPVPSHFFLPPDQASVWEGE 81 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSSHHHHTTS-H
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhcCcccCCccceeecccccccccCc
Confidence 45554 889999999999999999999999999999997654322221 122222332211110 011
Q ss_pred HHH--HHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEecCcccHHHH
Q 008816 482 PAI--VAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFRGMWSFDCL 546 (552)
Q Consensus 482 p~~--iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~~~f~~~~l 546 (552)
+.. ....++.. ...++|+|||||||... .+++.. ....+.+...-+++|.||+.|
T Consensus 82 ~~~~~~L~q~l~~-l~~~~DfLVID~PGtd~---~lsr~A------hs~ADtLiTPlNdSfvDfDll 138 (261)
T PF09140_consen 82 NVEDKRLEQALAD-LEGDLDFLVIDTPGTDD---RLSRVA------HSMADTLITPLNDSFVDFDLL 138 (261)
T ss_dssp HHHHHHHHHHHHH-HHHH-SEEEEEE-SSS----HHHHHH------HHT-SEEEEEEESSHHHHCCC
T ss_pred chhHHHHHHHHHH-HhcCCCEEEEeCCCCCc---HHHHHH------HHhCCEEEccCchhHHhHHHH
Confidence 111 11234433 34689999999998543 333211 122244456678899888754
No 403
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.61 E-value=1.5e-07 Score=87.88 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=79.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC---CceEEEeeecCCcchH-HHHH--------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTFRSGA-VEQL-------------- 462 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~---ggkVll~~~D~~r~ga-~eqL-------------- 462 (552)
-+|-++++++.+|+ |+.++||+||||||++.-+++++... .|++.+.+.+.-...+ ..|.
T Consensus 16 cLLa~~n~Tia~Ge--ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 16 CLLANVNFTIAKGE--IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred eEEEeeeEEecCCc--EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 46778999999999 99999999999999999999999865 5778777666432111 1110
Q ss_pred ------------------HHH----HHHcCCceeecCCCCCHH-----HHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 463 ------------------RTH----ARRLQVPIFEKGYEKDPA-----IVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 463 ------------------~~~----~~~l~v~~~~~~~~~dp~-----~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
+.. .++.++.- -...+|. +.+|.++.+++...|..+++|+|- ...+..+
T Consensus 94 Vg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g---~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPF-S~LD~AL 169 (213)
T COG4136 94 VGQNLLFALPATLKGNARRNAANAALERSGLDG---AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPF-SRLDVAL 169 (213)
T ss_pred cccceEEecCcccccHHHHhhHHHHHHHhccch---hhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCch-hHHHHHH
Confidence 000 01112111 1123443 445889999999999999999997 4456666
Q ss_pred HHHHHHHh
Q 008816 516 YLFLLHIY 523 (552)
Q Consensus 516 m~eL~kl~ 523 (552)
.+..++.+
T Consensus 170 R~qfR~wV 177 (213)
T COG4136 170 RDQFRQWV 177 (213)
T ss_pred HHHHHHHH
Confidence 66665554
No 404
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=2.4e-07 Score=111.42 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=83.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHH--------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE-------------------- 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~e-------------------- 460 (552)
.+|++|+|.+.+|+ .|+|||.+|+||||++..|-++..+.+|+|.|.++|+...|-++
T Consensus 1154 ~VLk~is~~I~p~e--KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGE--KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred chhcCceEEEcCCc--eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence 57999999999999 99999999999999999999999999999999999976443222
Q ss_pred ---------------------HHHHHHHH----cCCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 461 ---------------------QLRTHARR----LQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 461 ---------------------qL~~~~~~----l~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
||+.+... ++..+.+.|....-.+..-..++||+..+..++++|||+.+-|.
T Consensus 1232 ~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~ 1308 (1381)
T KOG0054|consen 1232 FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP 1308 (1381)
T ss_pred cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCCh
Confidence 22233322 12223333444444455557889999999999999999976544
No 405
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.60 E-value=2.1e-07 Score=114.19 Aligned_cols=124 Identities=18% Similarity=0.131 Sum_probs=82.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH----hhCCceEEEeeecC------Cc--ch----------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL----LQHKVSVMMAACDT------FR--SG---------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l----~~~ggkVll~~~D~------~r--~g---------- 457 (552)
..+|+++++.+.+|+ +++|+||||+|||||++.|++.+ .+..|.|.+.+.+. +| .+
T Consensus 74 ~~iL~~vs~~i~~Ge--~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGE--LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred ceeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 458999999999999 99999999999999999999976 34678888766542 11 00
Q ss_pred ---HHHHHH--------------------------HHHHHcCCceeec-------CCCCCHHHHHHHHHHHHHhCCCCEE
Q 008816 458 ---AVEQLR--------------------------THARRLQVPIFEK-------GYEKDPAIVAKEAIQEATRNGSDVV 501 (552)
Q Consensus 458 ---a~eqL~--------------------------~~~~~l~v~~~~~-------~~~~dp~~iar~aIa~a~~~~~DvV 501 (552)
..|.|. ...+.+++.-... ..+....+.-|.+|++++..+++++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 011110 1122233321110 0122334445788999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHhhh
Q 008816 502 LVDTAGRMQVIIEYYLFLLHIYLH 525 (552)
Q Consensus 502 IIDtpGr~~~~~~lm~eL~kl~~~ 525 (552)
++|||++..|......-++.|...
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~l 255 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTS 255 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHH
Confidence 999999888776555544444443
No 406
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.6e-07 Score=99.75 Aligned_cols=104 Identities=26% Similarity=0.240 Sum_probs=64.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCc------eEEEeeecCCc-------chHHHHHHHHHHHcCCceeec-------
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKV------SVMMAACDTFR-------SGAVEQLRTHARRLQVPIFEK------- 476 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~gg------kVll~~~D~~r-------~ga~eqL~~~~~~l~v~~~~~------- 476 (552)
.|+|||||||||||++..|.+-+.++.| +..|.-.|-.. -.+++. +.+.+++|+...
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~Ey---Lqr~FNlpyq~ARK~LG~f 691 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEY---LQRKFNLPYQEARKQLGTF 691 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHH---HHHhcCCChHHHHHHhhhh
Confidence 7999999999999999999998877644 22222222110 112222 223333332210
Q ss_pred ----------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 477 ----------GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 477 ----------~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
.......+.+|.+++......|||+|+|+|+. ..+.+.+..|..-+.
T Consensus 692 GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTN-NLDIESIDALaEAIn 748 (807)
T KOG0066|consen 692 GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTN-NLDIESIDALAEAIN 748 (807)
T ss_pred hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCC-CcchhhHHHHHHHHH
Confidence 00112234457777776789999999999994 556677777776553
No 407
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.59 E-value=2e-07 Score=94.66 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=77.6
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC-------------cc---------------
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RS--------------- 456 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~-------------r~--------------- 456 (552)
+++|..+... +.++.|++|+||||++++||++.+++.|.|.+.+.-.+ |.
T Consensus 16 ~a~~~~p~~G--vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARG--ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCc--eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 4566665544 99999999999999999999999999998877543211 11
Q ss_pred ----------hHHHHHHHHHHHcCCceeecCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH---HHHHHHHH
Q 008816 457 ----------GAVEQLRTHARRLQVPIFEKGY--EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII---EYYLFLLH 521 (552)
Q Consensus 457 ----------ga~eqL~~~~~~l~v~~~~~~~--~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~---~lm~eL~k 521 (552)
....++......+||.-.-..+ ...-.+..|.||.+|+...|+++++|||=...+.. ++|--|..
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylER 173 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER 173 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHH
Confidence 1122333444445554222111 22334555899999999999999999997655543 34444444
Q ss_pred Hh
Q 008816 522 IY 523 (552)
Q Consensus 522 l~ 523 (552)
|.
T Consensus 174 L~ 175 (352)
T COG4148 174 LR 175 (352)
T ss_pred HH
Confidence 44
No 408
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.56 E-value=1.1e-06 Score=87.62 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+++|+||||+||||++..|++.+
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998553
No 409
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=98.51 E-value=4.1e-07 Score=91.87 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
++|+|+|..||||||++..||..+...|.+|+++++|+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~ 41 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKA 41 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 4788899999999999999999999999999999999863
No 410
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=98.48 E-value=5.3e-07 Score=85.95 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=54.5
Q ss_pred EEEE-cCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHH--HHHH---------cCCcee--ecC-CCCCH
Q 008816 418 VVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT--HARR---------LQVPIF--EKG-YEKDP 482 (552)
Q Consensus 418 I~lv-G~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~--~~~~---------l~v~~~--~~~-~~~dp 482 (552)
|+|+ +..|+||||++..||..+...|.+|+++++|.......-.... ..+. -.+... ..+ .. ..
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEY-LD 79 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHC-HH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhh-hH
Confidence 3455 5599999999999999999999999999999865433221100 0000 000000 000 00 12
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 483 AIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 483 ~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
....+..+.......||+||||+|+...
T Consensus 80 ~~~l~~~l~~l~~~~yD~iiiD~~~~~~ 107 (195)
T PF01656_consen 80 PELLREILESLIKSDYDYIIIDTPPGLS 107 (195)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEECSSSS
T ss_pred HHHHHHHHHHhhhccccceeeccccccc
Confidence 2234455555444569999999998554
No 411
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=98.47 E-value=1.1e-06 Score=89.10 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=36.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
++|+|.|..||||||++..||+.+...|++|+++++|+.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq 41 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 589999999999999999999999999999999999975
No 412
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.47 E-value=1.7e-06 Score=79.14 Aligned_cols=93 Identities=18% Similarity=0.224 Sum_probs=59.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHH---cCCceeecCCC-CCHHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARR---LQVPIFEKGYE-KDPAIVAKEAIQE 492 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~---l~v~~~~~~~~-~dp~~iar~aIa~ 492 (552)
+++|+|++|+||||++..|++.+...++.|++++++........++...... -.+.++..... .........+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 4789999999999999999999998999999999886543333222111111 11222222111 1222222334555
Q ss_pred HHhCCCCEEEEeCCCCC
Q 008816 493 ATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 493 a~~~~~DvVIIDtpGr~ 509 (552)
+...+++++|||++...
T Consensus 81 ~~~~~~~~lviDe~~~~ 97 (165)
T cd01120 81 RERGGDDLIILDELTRL 97 (165)
T ss_pred HhCCCCEEEEEEcHHHH
Confidence 66789999999999854
No 413
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.45 E-value=7.1e-07 Score=88.26 Aligned_cols=99 Identities=21% Similarity=0.201 Sum_probs=56.7
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHH--HHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCc-eeecCCCCCHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVA--YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP-IFEKGYEKDPAIVA 486 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA--~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~-~~~~~~~~dp~~ia 486 (552)
+..+.+++++|+||||+||||+++.|+ .++...|.-|. ++..+.+..+|+... ++.. -...+...-..++.
T Consensus 24 l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~---a~~~~~~~~d~i~~~---l~~~~si~~~~S~f~~el~ 97 (213)
T cd03281 24 IGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVP---ADSATIGLVDKIFTR---MSSRESVSSGQSAFMIDLY 97 (213)
T ss_pred ecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeE---cCCcEEeeeeeeeee---eCCccChhhccchHHHHHH
Confidence 344434699999999999999999999 44544444222 222223322222111 1100 00111122234444
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 487 KEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 487 r~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.++..+...++.+||+|||++..+...
T Consensus 98 ~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 98 QVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred HHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 5555566678899999999998877644
No 414
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.45 E-value=3.8e-07 Score=93.43 Aligned_cols=91 Identities=20% Similarity=0.141 Sum_probs=56.1
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHc-CCceeecCC---CCCHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-QVPIFEKGY---EKDPAIVAKEAIQ 491 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l-~v~~~~~~~---~~dp~~iar~aIa 491 (552)
+.++|+||||+||||+++.|++.+.+..|+|.+.+.++...... ..++... +++-...+. ..+....+...+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~---~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~ 188 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDER---SEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMM 188 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhH---HHHHHHhcccccccccccccccccchHHHHHHH
Confidence 48999999999999999999999999999999988877432111 1122221 122111111 0111111111222
Q ss_pred HHHhCCCCEEEEeCCCCC
Q 008816 492 EATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 492 ~a~~~~~DvVIIDtpGr~ 509 (552)
.++..+|+++|+|||+..
T Consensus 189 ~i~~~~P~villDE~~~~ 206 (270)
T TIGR02858 189 LIRSMSPDVIVVDEIGRE 206 (270)
T ss_pred HHHhCCCCEEEEeCCCcH
Confidence 333479999999999853
No 415
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.45 E-value=2.4e-07 Score=90.24 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=26.8
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHH
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA 436 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA 436 (552)
++++.+..|+ ++++|+||||+||||+++.|+
T Consensus 19 ~~~~~i~~~~-~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 19 PLDIQLGENK-RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred cceEEECCCc-eEEEEECCCCCChHHHHHHHH
Confidence 4677787773 489999999999999999998
No 416
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.45 E-value=1.5e-06 Score=98.62 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=79.7
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh---CCceEEEeeecC-----------------C--cc
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ---HKVSVMMAACDT-----------------F--RS 456 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~---~ggkVll~~~D~-----------------~--r~ 456 (552)
...+|++|+....+|+ +.+|+||+|+||||++..||+.... ..|.|++.+.-. + ..
T Consensus 42 ~k~iL~~vsg~~~~Ge--l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE--LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred cceeeeCcEEEEecCe--EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccc
Confidence 3568999999999999 9999999999999999999998864 578898877211 0 00
Q ss_pred hHHHHHHH---------------------HHHHcCCceeec---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 457 GAVEQLRT---------------------HARRLQVPIFEK---G----YEKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 457 ga~eqL~~---------------------~~~~l~v~~~~~---~----~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
...|.|.. ....+++.-... + .+....+.-|.+|+.=+..+|.++++|||+.
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTS 199 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTS 199 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCC
Confidence 11122211 122223221110 0 1222334446667666789999999999998
Q ss_pred CCChHH---HHHHHHHHh
Q 008816 509 MQVIIE---YYLFLLHIY 523 (552)
Q Consensus 509 ~~~~~~---lm~eL~kl~ 523 (552)
..|... +++.|+++.
T Consensus 200 GLDS~sA~~vv~~Lk~lA 217 (613)
T KOG0061|consen 200 GLDSFSALQVVQLLKRLA 217 (613)
T ss_pred CcchhhHHHHHHHHHHHH
Confidence 877654 444454444
No 417
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.44 E-value=8.4e-07 Score=99.05 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=78.2
Q ss_pred HhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe--------eecCCcch-------
Q 008816 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--------ACDTFRSG------- 457 (552)
Q Consensus 393 il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~--------~~D~~r~g------- 457 (552)
+.+|... -+++++++.+++|+ -+.|.|++||||||+++.||++-+-..|++.+- ..-+|-+.
T Consensus 400 l~~p~~~-~ll~~l~~~v~~G~--~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l 476 (604)
T COG4178 400 LRTPDGQ-TLLSELNFEVRPGE--RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREAL 476 (604)
T ss_pred EECCCCC-eeeccceeeeCCCC--EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHH
Confidence 3344433 57889999999999 999999999999999999999877666665443 33333110
Q ss_pred ---------HHHHHHHHHHHcCCceeec--------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 458 ---------AVEQLRTHARRLQVPIFEK--------GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 458 ---------a~eqL~~~~~~l~v~~~~~--------~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
..++|...-...+++-+.. ....++.+..|.|+++.+.+.|+++++||++...+.+..
T Consensus 477 ~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e 551 (604)
T COG4178 477 CYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETE 551 (604)
T ss_pred hCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHH
Confidence 1122222222222221110 112345556689999999999999999999966554433
No 418
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.43 E-value=9.2e-07 Score=96.45 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=39.6
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceE
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkV 446 (552)
...+++|..|++..|+ .++|+|+||+||||++++|++...|..-++
T Consensus 87 g~~l~kd~~~El~~g~--rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGR--RYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred CceeeeeeeEEecCCc--eEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 4568899999999999 999999999999999999998777654433
No 419
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.43 E-value=5.6e-06 Score=83.45 Aligned_cols=58 Identities=7% Similarity=-0.043 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHh----CCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEec
Q 008816 480 KDPAIVAKEAIQEATR----NGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 480 ~dp~~iar~aIa~a~~----~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
.......+.+|++++. ..++++|+|||+...+.......+..|... .....+.++++.
T Consensus 167 lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~g~~ii~iSH~ 228 (251)
T cd03273 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FKGSQFIVVSLK 228 (251)
T ss_pred cCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECC
Confidence 3445555778888765 578999999999777655444433433333 234456666655
No 420
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.42 E-value=1.2e-06 Score=93.90 Aligned_cols=118 Identities=25% Similarity=0.258 Sum_probs=75.9
Q ss_pred ccccccc-----CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCce-----EEE----eeecCCcchHHHHHHHHHHH--
Q 008816 405 DVHAAKE-----QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS-----VMM----AACDTFRSGAVEQLRTHARR-- 468 (552)
Q Consensus 405 di~~~~~-----~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggk-----Vll----~~~D~~r~ga~eqL~~~~~~-- 468 (552)
++.+.+. .|+ ||+++||||-||||++..||+.+.++.|. |.+ +..| -.+.++++-..+..
T Consensus 354 ~F~L~V~~G~i~~gE--vigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~--~~gtV~~~l~~~~~~~ 429 (591)
T COG1245 354 DFKLEVEEGEIYDGE--VIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPD--YDGTVEDLLRSAIRSA 429 (591)
T ss_pred ceEEEecCCeeecce--EEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCC--CCCcHHHHHHHhhhhh
Confidence 4455544 455 99999999999999999999999988663 111 1112 12344444322111
Q ss_pred -------------cCCc-eeec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhh
Q 008816 469 -------------LQVP-IFEK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHT 526 (552)
Q Consensus 469 -------------l~v~-~~~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~ 526 (552)
+++. ++++ -......++.|.||+.++..+.|+.|+|+|....+-+..+..-+-|..+.
T Consensus 430 ~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~ 502 (591)
T COG1245 430 FGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFI 502 (591)
T ss_pred cccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHH
Confidence 1221 1111 12345567789999999999999999999997776666665555554443
No 421
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=98.42 E-value=8.7e-07 Score=87.03 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=36.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
+|+++|..||||||++..||..+...|++|+++++|+..
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~ 40 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 789999999999999999999999999999999999764
No 422
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=98.41 E-value=9.3e-07 Score=90.42 Aligned_cols=39 Identities=31% Similarity=0.499 Sum_probs=37.2
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
++|+|+|..||||||++..||..+...|.+|+++++|+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence 589999999999999999999999999999999999986
No 423
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.41 E-value=1e-06 Score=96.05 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=73.9
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC-------------------------Cc-c
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------------------FR-S 456 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~-------------------------~r-~ 456 (552)
+++++|.+..+. -|++|||||+||||++..+.+.+.+..|.|.--.--. |. .
T Consensus 406 y~~l~fgid~~s--rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~ 483 (614)
T KOG0927|consen 406 YKKLNFGIDLDS--RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDE 483 (614)
T ss_pred hhhhhcccCccc--ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhcccc
Confidence 334445555556 7999999999999999999999999877664211110 01 1
Q ss_pred hHHHHHHHHHHHcCCceeec---CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 457 GAVEQLRTHARRLQVPIFEK---GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 457 ga~eqL~~~~~~l~v~~~~~---~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
...+..+.+..++|+.--.+ -.........|.++++.....|.++|+|+|+ +|.+.+-|..|.+-+
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt-nhLDi~tid~laeai 552 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT-NHLDIETIDALAEAI 552 (614)
T ss_pred chHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCC-cCCCchhHHHHHHHH
Confidence 12233344444444331000 0011222334677777778999999999999 677777777777655
No 424
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.39 E-value=1e-06 Score=86.05 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=79.8
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHH------HHH-HHH-------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE------QLR-THA------- 466 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~e------qL~-~~~------- 466 (552)
.++-|+++.++.|. ...+||.||+||||++..|++-....++.|.+.+.|.|+-...+ .|. .|+
T Consensus 28 P~~~Dfnldlp~gs--RcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag 105 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGS--RCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG 105 (291)
T ss_pred ceEEEEeeccCCCc--eEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccc
Confidence 57788999999998 88999999999999999999877777899999999988622111 000 011
Q ss_pred -----------------------------HHcCCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHH
Q 008816 467 -----------------------------RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYL 517 (552)
Q Consensus 467 -----------------------------~~l~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~ 517 (552)
+.++|.+.-+-......+.-|..|.+.+.+.+.++++|+-+.-.+-...++
T Consensus 106 evplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARad 185 (291)
T KOG2355|consen 106 EVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARAD 185 (291)
T ss_pred cccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHH
Confidence 111222111000011112225778888999999999999997665555555
Q ss_pred HHHHHh
Q 008816 518 FLLHIY 523 (552)
Q Consensus 518 eL~kl~ 523 (552)
-|.=+.
T Consensus 186 LLeFlk 191 (291)
T KOG2355|consen 186 LLEFLK 191 (291)
T ss_pred HHHHHH
Confidence 544443
No 425
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.39 E-value=4.7e-06 Score=82.93 Aligned_cols=40 Identities=33% Similarity=0.308 Sum_probs=36.3
Q ss_pred EEEEEEc-CCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 416 YVVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 416 ~vI~lvG-~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
++|+|++ ..|+||||++..||..+...|.+|+++++|++.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 4788887 599999999999999999999999999999864
No 426
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=98.39 E-value=2e-06 Score=87.20 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=35.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+|+|.|..||||||++..||..+...|.+|+++++|+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 68888999999999999999999999999999999974
No 427
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.36 E-value=6.6e-07 Score=87.27 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=24.9
Q ss_pred cccccCCCcEEEEEEcCCCCChhHHHHHHHHH
Q 008816 407 HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 407 ~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
++.+..|+ +++|+||||+||||+++.|+..
T Consensus 23 ~~~l~~~~--~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 23 DINLGSGR--LLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEcCCe--EEEEECCCCCccHHHHHHHHHH
Confidence 34455666 9999999999999999999943
No 428
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.36 E-value=9.3e-06 Score=82.91 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=30.8
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA 436 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA 436 (552)
..-|+++++.++.|. +++|+|++|||||||+..+.
T Consensus 8 ~~nl~~v~~~ip~g~--~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 8 ENNLKNIDVDIPLGV--LTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred hhcCCCceeeccCCc--EEEEECCCCCchHHHHHHHH
Confidence 345788999999999 99999999999999998663
No 429
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.36 E-value=1.1e-05 Score=80.37 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=59.0
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceee-----------c--
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE-----------K-- 476 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~-----------~-- 476 (552)
++.|. ++.|.|++|+||||++..++......|.+|++++.+-- .+++...+..+++.+.. .
T Consensus 22 ~~~g~--~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~----~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~ 95 (234)
T PRK06067 22 IPFPS--LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT----SKSYLKQMESVKIDISDFFLWGYLRIFPLNT 95 (234)
T ss_pred CcCCc--EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC----HHHHHHHHHHCCCChhHHHhCCCceEEeccc
Confidence 35666 99999999999999999998766667999999998742 23343344444433211 0
Q ss_pred -CC---CCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 477 -GY---EKDPAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 477 -~~---~~dp~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
.. ..+...+...........++++|+||+++.
T Consensus 96 ~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~ 131 (234)
T PRK06067 96 EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTI 131 (234)
T ss_pred cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHH
Confidence 00 111123332233333335899999999984
No 430
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.35 E-value=1.2e-06 Score=85.78 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=30.5
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH--hhCCce
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVS 445 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l--~~~ggk 445 (552)
+++++++. .|+ +++|+||||+||||+++.|++.. ...|..
T Consensus 16 v~n~i~l~--~g~--~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~ 57 (199)
T cd03283 16 VANDIDME--KKN--GILITGSNMSGKSTFLRTIGVNVILAQAGAP 57 (199)
T ss_pred ecceEEEc--CCc--EEEEECCCCCChHHHHHHHHHHHHHHHcCCE
Confidence 55666654 466 99999999999999999999755 334443
No 431
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.35 E-value=9.6e-06 Score=79.24 Aligned_cols=111 Identities=13% Similarity=0.001 Sum_probs=58.5
Q ss_pred ccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC----------------C---ceEE--EeeecCCc--ch--HHH
Q 008816 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----------------K---VSVM--MAACDTFR--SG--AVE 460 (552)
Q Consensus 406 i~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~----------------g---gkVl--l~~~D~~r--~g--a~e 460 (552)
+.+.+.+| +.+|+|+||+||||++..|...+... + ..|. +.....+. .. ...
T Consensus 15 ~~l~f~~g---l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (198)
T cd03276 15 LQIEFGPR---VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD 91 (198)
T ss_pred eEEecCCC---eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence 44444444 78999999999999999998644221 1 1111 11111111 10 112
Q ss_pred HHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH----hCCCCEEEEeCCCCCCChHHHHHHHH
Q 008816 461 QLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT----RNGSDVVLVDTAGRMQVIIEYYLFLL 520 (552)
Q Consensus 461 qL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~----~~~~DvVIIDtpGr~~~~~~lm~eL~ 520 (552)
++..+.+. .-...............+.+|++|+ ..+++++|+|||....+.......+.
T Consensus 92 ~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~ 154 (198)
T cd03276 92 MARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD 154 (198)
T ss_pred HHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH
Confidence 22222222 1000011112233444566777776 58999999999998776654433333
No 432
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=98.35 E-value=3.3e-06 Score=97.75 Aligned_cols=101 Identities=16% Similarity=0.225 Sum_probs=67.9
Q ss_pred cCCCcEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHH-----HHHH----------------
Q 008816 411 EQRKPYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-----HARR---------------- 468 (552)
Q Consensus 411 ~~g~p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~-----~~~~---------------- 468 (552)
....+++|+|+|+ +|+||||++..||..+...|.+|+++++|++++.....+.. +.+.
T Consensus 527 ~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~ 606 (726)
T PRK09841 527 METENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGK 606 (726)
T ss_pred cCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCC
Confidence 3445679999998 79999999999999999999999999999987643322110 0010
Q ss_pred cCCceeecC-CCCCHHHHH-----HHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 469 LQVPIFEKG-YEKDPAIVA-----KEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 469 l~v~~~~~~-~~~dp~~ia-----r~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
-++.++..+ ...+|..+. ...+.. +...||+||||||+.+...
T Consensus 607 ~~l~vl~~g~~~~~p~ell~~~~~~~ll~~-l~~~yD~IIIDtPP~~~~~ 655 (726)
T PRK09841 607 GGFDVITRGQVPPNPSELLMRDRMRQLLEW-ANDHYDLVIVDTPPMLAVS 655 (726)
T ss_pred CCEEEEeCCCCCCCHHHHhCcHHHHHHHHH-HHhcCCEEEEeCCCccccc
Confidence 133344332 234555442 233333 4578999999999876643
No 433
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=98.34 E-value=1.8e-06 Score=87.54 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=35.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+|++.|..||||||++..||..+...|.+|+++++|+.
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 57888999999999999999999999999999999985
No 434
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=98.34 E-value=1.2e-06 Score=89.36 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
++|+|+|..||||||++..||..+...|.+|+++++|++.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~ 41 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKA 41 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccc
Confidence 4888899999999999999999999999999999999864
No 435
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.34 E-value=4.6e-06 Score=84.03 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
+++|+||||+||||++..|++.+.
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~ 47 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLG 47 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999998775
No 436
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.33 E-value=2.1e-06 Score=84.48 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=32.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
-+.+++++....|+ +++|+||||+||||+++.|++..
T Consensus 17 ~v~~~~~~~~~~~~--~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 17 FIPNDIYLTRGSSR--FHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEEeeeEEeeCCCc--EEEEECCCCCCHHHHHHHHHHHH
Confidence 46778898888877 99999999999999999998643
No 437
>PRK10818 cell division inhibitor MinD; Provisional
Probab=98.33 E-value=4.2e-06 Score=84.86 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=36.1
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
++|+|++. .||||||++..||..+...|.+|+++++|..
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 48899965 9999999999999999999999999999985
No 438
>PRK11670 antiporter inner membrane protein; Provisional
Probab=98.33 E-value=1.3e-05 Score=85.62 Aligned_cols=44 Identities=23% Similarity=0.340 Sum_probs=39.3
Q ss_pred cEEEEEE-cCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH
Q 008816 415 PYVVVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA 458 (552)
Q Consensus 415 p~vI~lv-G~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga 458 (552)
.++|+|. |..|+||||++..||..+...|.+|+++++|++.+..
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~ 151 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSI 151 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence 4588887 7799999999999999999999999999999987653
No 439
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=98.33 E-value=4.4e-06 Score=72.33 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=34.4
Q ss_pred EEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 417 VVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 417 vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+|+|+|. .|+||||++..||..+...|.+|+++++|..
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4778886 8999999999999999988999999999985
No 440
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=98.33 E-value=1.5e-06 Score=88.62 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=36.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
++|+|+|..||||||++..||..+...|.+|+++++|+.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq 40 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPK 40 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 488999999999999999999999999999999999986
No 441
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=98.32 E-value=9.7e-06 Score=78.91 Aligned_cols=43 Identities=28% Similarity=0.242 Sum_probs=38.7
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcch
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG 457 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g 457 (552)
+++|+|++. .|+||||++..||..+...|.+|+++++|++.+.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~ 60 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSV 60 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChh
Confidence 569999977 7999999999999999999999999999987643
No 442
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.31 E-value=1.3e-06 Score=95.10 Aligned_cols=106 Identities=25% Similarity=0.433 Sum_probs=72.6
Q ss_pred HHH--HHHHHHHCCCCHHHHHHHHHHHHHHHc--CCCCCCccchhHHHHHHHHHHHHHHhCCC--CcccccccccccccC
Q 008816 339 LKA--LKDRLMTKNVAEEIAEKLCESVAASLE--GKKLASFTRISSIVQAAMEEALVRILTPR--RSIDILRDVHAAKEQ 412 (552)
Q Consensus 339 l~~--l~~~Ll~~~V~~~va~~l~~~v~~~l~--g~~~~~f~~~~~~v~~~l~~~L~~il~~~--~~~diL~di~~~~~~ 412 (552)
+.+ |.+.|+++||++++|.+|++.++..+. |..... ...++..+.+.|.+.+.+. ...+....+ ...
T Consensus 180 FSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~----ra~VR~~V~~~L~~~l~~~~a~~y~la~~i---~~~ 252 (475)
T PRK12337 180 FSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVR----RDQLRRKVEALLLEEAGEEVARRYRLLRSI---RRP 252 (475)
T ss_pred CchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccccc----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHh---hcc
Confidence 444 788999999999999999999998884 444332 3445666666666655421 011111001 122
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 413 g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
.+|.+|+|+|+||+||||++.+||..+.. ..++..|+.|
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~----~~ii~tD~iR 291 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGI----TRIVSTDAVR 291 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC----cEEeehhHHH
Confidence 46899999999999999999999977643 3367888754
No 443
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.31 E-value=3e-06 Score=89.57 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=72.4
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC-------cc-------------------
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RS------------------- 456 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~-------r~------------------- 456 (552)
+..||+.+.+|+ ++.++|.|||||||++..|.|+++|+.|.|++.+..+- |.
T Consensus 339 vgPiNl~ikrGe--lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 339 VGPINLTIKRGE--LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred ecceeeEEecCc--EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 457899999999 99999999999999999999999999999999876431 10
Q ss_pred --hHHHHHHHHHHHcCC----ceeecC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 457 --GAVEQLRTHARRLQV----PIFEKG---YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 457 --ga~eqL~~~~~~l~v----~~~~~~---~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
++-+....|-+++.+ .+-... ......+.-|.|+-.|+.++.|++++|+=..-|++.
T Consensus 417 ~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPa 482 (546)
T COG4615 417 GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPA 482 (546)
T ss_pred cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChH
Confidence 011111222222211 110000 011112223677777889999999999966566654
No 444
>PRK11519 tyrosine kinase; Provisional
Probab=98.31 E-value=2.8e-06 Score=98.15 Aligned_cols=100 Identities=24% Similarity=0.333 Sum_probs=67.2
Q ss_pred cCCCcEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHH-----HH----------HH------
Q 008816 411 EQRKPYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-----HA----------RR------ 468 (552)
Q Consensus 411 ~~g~p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~-----~~----------~~------ 468 (552)
....+++|+|+++ +|+||||++..||..+...|.+|+++++|+.++.....+.. +. +.
T Consensus 522 ~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~ 601 (719)
T PRK11519 522 MQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSI 601 (719)
T ss_pred cCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCc
Confidence 3344579999996 89999999999999999999999999999987643222210 00 10
Q ss_pred cCCceeecCC-CCCHHHHH-----HHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 469 LQVPIFEKGY-EKDPAIVA-----KEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 469 l~v~~~~~~~-~~dp~~ia-----r~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
-++.++..+. ..+|..+. ...|.. +...||+||||||+.+..
T Consensus 602 ~~l~~lp~g~~~~~~~ell~s~~~~~ll~~-l~~~yD~ViiDtpP~~~v 649 (719)
T PRK11519 602 ANFDLIPRGQVPPNPSELLMSERFAELVNW-ASKNYDLVLIDTPPILAV 649 (719)
T ss_pred CCEEEEeCCCCCCCHHHHhhHHHHHHHHHH-HHhcCCEEEEeCCCcccc
Confidence 1333444332 34555433 233333 457899999999987654
No 445
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.30 E-value=5.9e-07 Score=86.61 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=56.0
Q ss_pred ccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHH
Q 008816 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (552)
Q Consensus 408 ~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar 487 (552)
+.+..|. .++|+||||+||||+++.|++++.+..+.|.+-+...+... +....++..........+..-..
T Consensus 20 ~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 20 LAVEARK--NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP-------HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHhCCC--EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC-------CCCEEEEEEecCCCCCCCccCHH
Confidence 3445677 99999999999999999999999887777766433222110 11111111111111111111224
Q ss_pred HHHHHHHhCCCCEEEEeCCC
Q 008816 488 EAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 488 ~aIa~a~~~~~DvVIIDtpG 507 (552)
.++..++..+||+|+++|-.
T Consensus 91 ~~l~~~lR~~pd~i~igEir 110 (186)
T cd01130 91 DLLRSALRMRPDRIIVGEVR 110 (186)
T ss_pred HHHHHHhccCCCEEEEEccC
Confidence 56667778899999999874
No 446
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=98.29 E-value=3.5e-06 Score=85.82 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=63.4
Q ss_pred CCCcEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHH-----HHH----------------Hc
Q 008816 412 QRKPYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-----HAR----------------RL 469 (552)
Q Consensus 412 ~g~p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~-----~~~----------------~l 469 (552)
.+.+++|+|+++ .|+||||++..||..+...|.+|+++++|+.++.....+.. +.+ .-
T Consensus 100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~ 179 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALE 179 (274)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCC
Confidence 344679999977 89999999999999999999999999999876542211100 000 01
Q ss_pred CCceeecCCC-CCHHHHH-----HHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 470 QVPIFEKGYE-KDPAIVA-----KEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 470 ~v~~~~~~~~-~dp~~ia-----r~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
++.++..+.. .++..+. ...+.. +...||+||||+|+...
T Consensus 180 ~l~~lp~g~~~~~~~~~~~~~~~~~~l~~-l~~~yD~ViiD~pp~~~ 225 (274)
T TIGR03029 180 NLSVLPAGAIPPNPQELLARPAFTDLLNK-VMGDYDVVIVDTPSAEH 225 (274)
T ss_pred CEEEEeCcCCCCCHHHHhCcHHHHHHHHH-HHhcCCEEEEeCCCccc
Confidence 2333333221 2333221 334443 46789999999998643
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.29 E-value=9.6e-06 Score=81.17 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=57.5
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCce--------------ee
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI--------------FE 475 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~--------------~~ 475 (552)
+++|. +++|+|++|+||||++..++..+.+.|.+++++..+.......+++ ..++..+ ++
T Consensus 21 i~~g~--~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~----~~~g~~~~~~~~~~~l~~~~~~~ 94 (230)
T PRK08533 21 IPAGS--LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM----MSLGYDINKKLISGKLLYIPVYP 94 (230)
T ss_pred CCCCc--EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH----HHhCCchHHHhhcCcEEEEEecc
Confidence 46777 9999999999999997776665656678888888776443333333 3333211 10
Q ss_pred cCCC-CCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 476 KGYE-KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 476 ~~~~-~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
.... .+....+...+......+++++++|+|+...
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 0000 1112222333333334689999999998644
No 448
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.29 E-value=4.5e-06 Score=84.17 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=35.9
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHh-hCCceEEEeeecCC
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLL-QHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~-~~ggkVll~~~D~~ 454 (552)
+++|+|+.. .||||||++..||+++. ..|.+|++++.|+.
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ 43 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQ 43 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 468999987 89999999999999999 55589999999986
No 449
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.29 E-value=3.6e-06 Score=83.18 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=25.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
..+++++++ + +++|+||||+||||++..|...
T Consensus 17 ~~~l~~~~~-----~--i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 17 EQVIGPFHK-----S--FSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CeeeccCCC-----C--eEEEECCCCCCHHHHHHHHHHH
Confidence 345555554 3 9999999999999999999843
No 450
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=98.28 E-value=4.8e-06 Score=82.91 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=34.5
Q ss_pred EEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 417 VVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 417 vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+|+|++. .||||||++..||..+...|.+|+++++|+.
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6777754 9999999999999999999999999999985
No 451
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=98.28 E-value=6.4e-06 Score=82.36 Aligned_cols=39 Identities=28% Similarity=0.304 Sum_probs=35.5
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
++|+|++. .|+||||++..||..+...|.+|+++++|+.
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 48888865 9999999999999999999999999999985
No 452
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=98.26 E-value=8.3e-06 Score=94.74 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=66.4
Q ss_pred ccCCCcEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHH---------------HHH------
Q 008816 410 KEQRKPYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT---------------HAR------ 467 (552)
Q Consensus 410 ~~~g~p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~---------------~~~------ 467 (552)
.....+++|+|+++ .|+||||++..||..+...|.+|+++++|++++.....+.. +..
T Consensus 541 ~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~ 620 (754)
T TIGR01005 541 KSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASG 620 (754)
T ss_pred ccCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCC
Confidence 34445679999988 99999999999999999999999999999986643332210 000
Q ss_pred HcCCceeecCC-CCCHHHHH-----HHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 468 RLQVPIFEKGY-EKDPAIVA-----KEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 468 ~l~v~~~~~~~-~~dp~~ia-----r~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
.-++.++..+. ..+|..+. +..+.. +...||+||||||+.+.
T Consensus 621 ~~~l~~l~~g~~~~~~~~ll~~~~~~~~l~~-l~~~yD~IiID~pp~~~ 668 (754)
T TIGR01005 621 AASLPMLDSGLFPHGITELLASPAMFSLVIH-ARLYSDCVVVDVGTADP 668 (754)
T ss_pred CCCeeEecCCCCCCCHHHHhccHHHHHHHHH-HHhhCCEEEEcCCCcch
Confidence 01333443332 22333332 233443 45789999999999764
No 453
>PRK10037 cell division protein; Provisional
Probab=98.26 E-value=2.1e-06 Score=86.56 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=36.2
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
++|+|++- .||||||++..||..+...|.+|+++++|+..
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~ 42 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDN 42 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhh
Confidence 47888855 99999999999999999999999999999864
No 454
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.25 E-value=6.1e-06 Score=78.98 Aligned_cols=52 Identities=29% Similarity=0.252 Sum_probs=42.9
Q ss_pred ccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHH
Q 008816 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE 460 (552)
Q Consensus 406 i~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~e 460 (552)
++..+..|+ ++-+|||||+||||+++.+|+.+. -.|.|.+.+.+.......|
T Consensus 18 lS~qv~aGe--~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~e 69 (248)
T COG4138 18 LSGEVRAGE--ILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATE 69 (248)
T ss_pred cccccccce--EEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhH
Confidence 556677888 999999999999999999999766 5688999999876554444
No 455
>PRK13768 GTPase; Provisional
Probab=98.25 E-value=3.1e-06 Score=85.92 Aligned_cols=40 Identities=30% Similarity=0.535 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+++++|.|+.|+||||++..++.++...|.+|++++.|+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 4689999999999999999999999999999999999974
No 456
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.25 E-value=9.6e-06 Score=79.56 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhcc--ccEEEEEEec
Q 008816 487 KEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVC--EHFVNIITFR 538 (552)
Q Consensus 487 r~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~--~~~~~ii~~~ 538 (552)
+.++++++..+++++|+|+|....+.....+.+.+++..... ...+.++++.
T Consensus 129 rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 129 RLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred HHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 357788888999999999999766554433144444433222 2344455443
No 457
>CHL00175 minD septum-site determining protein; Validated
Probab=98.24 E-value=8.3e-06 Score=83.36 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=37.5
Q ss_pred CcEEEEEEc-CCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 414 KPYVVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 414 ~p~vI~lvG-~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
..++|+|+| ..|+||||++..||..+...|.+|+++++|+..
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~ 56 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGL 56 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 345899996 599999999999999999999999999999863
No 458
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=98.24 E-value=5.3e-06 Score=84.52 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=36.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+|+|.|..||||||++..||..+...|.+|+++++|+.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q 39 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPK 39 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 78999999999999999999999999999999999975
No 459
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.23 E-value=3.2e-06 Score=89.86 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=80.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh--------hCCceEEEe---------eecC--Cc-chHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--------QHKVSVMMA---------ACDT--FR-SGAV 459 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~--------~~ggkVll~---------~~D~--~r-~ga~ 459 (552)
--+++|+++.+++|+ +++++|++|+||||++++|++... ++.|+|-+. +.+- |+ ...+
T Consensus 396 ryvlr~vNL~ikpGd--vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~til 473 (593)
T COG2401 396 RYVLRNLNLEIKPGD--VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL 473 (593)
T ss_pred eeeeeceeeEecCCC--eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHH
Confidence 357899999999999 999999999999999999998664 344555432 1111 11 0122
Q ss_pred HHHHHHH----------HHcCCc---eeec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhh
Q 008816 460 EQLRTHA----------RRLQVP---IFEK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLH 525 (552)
Q Consensus 460 eqL~~~~----------~~l~v~---~~~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~ 525 (552)
+|+..-. .+.|+. ++.. -....+.+.-+.-|+.++..++.++++|+.+...+....|..+++|...
T Consensus 474 ehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel 553 (593)
T COG2401 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL 553 (593)
T ss_pred HHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH
Confidence 3332211 111211 1111 1112222333556778888999999999999888888888888887755
Q ss_pred h
Q 008816 526 T 526 (552)
Q Consensus 526 ~ 526 (552)
.
T Consensus 554 a 554 (593)
T COG2401 554 A 554 (593)
T ss_pred H
Confidence 4
No 460
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=98.22 E-value=7.9e-06 Score=83.28 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=36.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeecCCc
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFR 455 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D~~r 455 (552)
++|+|+|..||||||++..||+.+.. .|.+|+++++|+.-
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~ 43 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKA 43 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCc
Confidence 48899999999999999999999997 69999999999874
No 461
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.22 E-value=1.2e-05 Score=75.77 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcC-CceeecCCCCCHHHHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ-VPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~-v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
.+++|+||||+||||+++.++..+-...+++.- ..+. +.+... -+.... +... . ........+.++++++
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~-~~g~~~----~~~~~~~i~~~-~--~lS~G~~~~~~la~~L 92 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV-KAGCIV----AAVSAELIFTR-L--QLSGGEKELSALALIL 92 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc-cCCCcc----eeeEEEEehhe-e--eccccHHHHHHHHHHH
Confidence 499999999999999999998766544322221 1110 000000 000000 0000 0 1111233345566655
Q ss_pred hC----CCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 495 RN----GSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 495 ~~----~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
.. +++++|+|||++..+.......+..+
T Consensus 93 ~~~~~~~~~llllDEp~~gld~~~~~~l~~~l 124 (162)
T cd03227 93 ALASLKPRPLYILDEIDRGLDPRDGQALAEAI 124 (162)
T ss_pred HhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 43 78999999999877765544433333
No 462
>PRK09183 transposase/IS protein; Provisional
Probab=98.22 E-value=1e-05 Score=82.48 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=71.9
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHH
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI 484 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~ 484 (552)
.++| +..|. .++|+||+|+||||++..|+..+...|.+|.++.+.. ....+...... ....
T Consensus 95 ~~~~-i~~~~--~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~----l~~~l~~a~~~-----------~~~~- 155 (259)
T PRK09183 95 SLSF-IERNE--NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAAD----LLLQLSTAQRQ-----------GRYK- 155 (259)
T ss_pred cCCc-hhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHH----HHHHHHHHHHC-----------CcHH-
Confidence 3445 56677 8899999999999999999988778888998775321 12222111100 0011
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEecCc
Q 008816 485 VAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFRGM 540 (552)
Q Consensus 485 iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~~~ 540 (552)
..+... ...+|+++||.-|....+......|-.++...+....+++.++.++
T Consensus 156 ---~~~~~~-~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~~ 207 (259)
T PRK09183 156 ---TTLQRG-VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPF 207 (259)
T ss_pred ---HHHHHH-hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCCH
Confidence 112121 3678999999999877776666677777766665555555544443
No 463
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=98.21 E-value=2.8e-05 Score=76.22 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=36.9
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhh-CCceEEEeeecCCcc
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRS 456 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~-~ggkVll~~~D~~r~ 456 (552)
.++|+|+|+ .|+||||++..||..+.. .|.+|+++++|++..
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~ 78 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRP 78 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCCh
Confidence 459999976 899999999999999886 599999999998753
No 464
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=98.21 E-value=6.5e-06 Score=85.17 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=36.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 418 VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 418 I~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
|+|.|..||||||++..||..+...|.+|+++++|+..
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 89999999999999999999999999999999999863
No 465
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.21 E-value=1.7e-05 Score=75.41 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=58.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCcee-----------ecC-CCCCHH-
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF-----------EKG-YEKDPA- 483 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~-----------~~~-~~~dp~- 483 (552)
+++|.|++|+||||++..++......|.+|+++..+. ..+++...+..+|+++- ... ....+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~----~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~ 76 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE----SPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAE 76 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC----CHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhh
Confidence 3678999999999999999988888899999998875 24444444554444321 100 000111
Q ss_pred -----HHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 484 -----IVAKEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 484 -----~iar~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
.+.......+...++++|+||+|+...+
T Consensus 77 ~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 77 SSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred hhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1222233333457899999999986543
No 466
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.20 E-value=2.9e-05 Score=76.41 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=24.6
Q ss_pred cccccc-CCCcEEEEEEcCCCCChhHHHHHHHHH
Q 008816 406 VHAAKE-QRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 406 i~~~~~-~g~p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
++|... .|+ +++|+|+||+||||++..|++.
T Consensus 20 i~~~~~~~~~--~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 20 IDFTGLDNNG--LFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred EeCCCCCccC--EEEEECCCCCCHHHHHHHheee
Confidence 445432 356 9999999999999999999853
No 467
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.19 E-value=6.1e-06 Score=80.88 Aligned_cols=93 Identities=19% Similarity=0.296 Sum_probs=59.6
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCC---CCHHHHHHH
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE---KDPAIVAKE 488 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~---~dp~~iar~ 488 (552)
.+.+++|+|+|+.|+||||++..++..+. .+.+|.++..|.......++++. .+.+++.-..+ .........
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~----~~~~~~~l~~gcic~~~~~~~~~ 93 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRK----YGAPAIQINTGKECHLDAHMVAH 93 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHH----cCCcEEEEcCCCcccCChHHHHH
Confidence 44578999999999999999999998764 34688998888764434444432 33333321111 111112224
Q ss_pred HHHHHHhCCCCEEEEeCCCCC
Q 008816 489 AIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 489 aIa~a~~~~~DvVIIDtpGr~ 509 (552)
++......++|+|||+|.|..
T Consensus 94 ~l~~~~~~~~d~IiIEt~G~l 114 (207)
T TIGR00073 94 ALEDLPLDDIDLLFIENVGNL 114 (207)
T ss_pred HHHHhccCCCCEEEEecCCCc
Confidence 555444457899999999943
No 468
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.19 E-value=8.2e-06 Score=76.99 Aligned_cols=95 Identities=24% Similarity=0.315 Sum_probs=57.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE-----------------EeeecCCcchH---HHHHHHHHHHcCCcee
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------------MAACDTFRSGA---VEQLRTHARRLQVPIF 474 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl-----------------l~~~D~~r~ga---~eqL~~~~~~l~v~~~ 474 (552)
+..|+|.|++||||||++.+|+..|...|.+|. +++.++-+.+. +..-+....+++|.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v- 83 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV- 83 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH-
Confidence 347899999999999999999999998877764 22222221110 000000000111111
Q ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHH
Q 008816 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYY 516 (552)
Q Consensus 475 ~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm 516 (552)
.....++-.+|.+|. ...|+||||+-|-|.....-.
T Consensus 84 -----~~le~i~~~al~rA~-~~aDvIIIDEIGpMElks~~f 119 (179)
T COG1618 84 -----EGLEEIAIPALRRAL-EEADVIIIDEIGPMELKSKKF 119 (179)
T ss_pred -----HHHHHHhHHHHHHHh-hcCCEEEEecccchhhccHHH
Confidence 123345667788875 448999999999987655433
No 469
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.19 E-value=6e-06 Score=82.36 Aligned_cols=44 Identities=25% Similarity=0.270 Sum_probs=35.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHH-HHhhCCceE
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY-WLLQHKVSV 446 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~-~l~~~ggkV 446 (552)
-+..++++.+..|+ +++|+||||+||||+++.|+. .+....|..
T Consensus 19 ~v~n~i~~~~~~g~--~~~itG~N~~GKStll~~i~~~~~la~~G~~ 63 (222)
T cd03287 19 FVPNDIHLSAEGGY--CQIITGPNMGGKSSYIRQVALITIMAQIGSF 63 (222)
T ss_pred EEEEeEEEEecCCc--EEEEECCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 35678888888888 999999999999999999998 555555543
No 470
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=98.18 E-value=5.2e-06 Score=89.81 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=37.0
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
+++|+|+.. .||||||++..||..+...|.+|+++++|+..
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~ 162 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA 162 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 468888854 99999999999999999999999999999863
No 471
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.18 E-value=5e-06 Score=86.19 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=64.3
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCC--CCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccCCCcEEEEEE
Q 008816 344 DRLMTKNVAEEIAEKLCESVAASLEGK--KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFV 421 (552)
Q Consensus 344 ~~Ll~~~V~~~va~~l~~~v~~~l~g~--~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g~p~vI~lv 421 (552)
+.|..+|+.+++|-.+...|.+.+... ...+...+...|.+.|.+..-..+.+ ..+++..+. ....|.+|+|.
T Consensus 24 rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~~--~y~~~~~i~---~~~~p~iIlI~ 98 (301)
T PRK04220 24 RSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVAE--KYLLWRRIR---KSKEPIIILIG 98 (301)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHHH--HHHHHHHHh---cCCCCEEEEEE
Confidence 457777777777776666666665443 33343444445555554444333322 133332221 22468899999
Q ss_pred cCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 422 GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 422 G~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
|++||||||++..||..+ +.. .++.+|++|
T Consensus 99 G~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 99 GASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CCCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 999999999999999887 343 356799876
No 472
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=98.17 E-value=4.3e-06 Score=84.68 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=36.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
+++|+|+|..||||||++..||+.+...| +|+++++|+..
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~ 41 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKA 41 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCc
Confidence 35889999999999999999999999888 99999999763
No 473
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.16 E-value=1.1e-05 Score=78.76 Aligned_cols=80 Identities=23% Similarity=0.346 Sum_probs=50.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhC-CceEEEeeecCCcchHHHHHHHHHHHcCCceeec-CCCCCHHHHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK-GYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~-ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~-~~~~dp~~iar~aIa~a~ 494 (552)
+|+|+||+||||||+++.|++++... +++|..+.. + ++.... . ...++.+ ..+.+... ...++..++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-~-----~E~~~~--~--~~~~i~q~~vg~~~~~-~~~~i~~aL 71 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-P-----IEFVHE--S--KRSLINQREVGLDTLS-FENALKAAL 71 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-C-----cccccc--C--ccceeeecccCCCccC-HHHHHHHHh
Confidence 79999999999999999999888754 556655433 2 121110 0 1111111 11222222 245778888
Q ss_pred hCCCCEEEEeCCC
Q 008816 495 RNGSDVVLVDTAG 507 (552)
Q Consensus 495 ~~~~DvVIIDtpG 507 (552)
..+||+|++|++.
T Consensus 72 r~~pd~ii~gEir 84 (198)
T cd01131 72 RQDPDVILVGEMR 84 (198)
T ss_pred cCCcCEEEEcCCC
Confidence 8999999999985
No 474
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=98.16 E-value=1.1e-05 Score=86.87 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=36.6
Q ss_pred CcEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeee-cCC
Q 008816 414 KPYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAAC-DTF 454 (552)
Q Consensus 414 ~p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~-D~~ 454 (552)
++++|+|+.. .||||||++..||..+...|.+|+++++ |+.
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ 147 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQ 147 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 3579999855 9999999999999999999999999996 875
No 475
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.16 E-value=7.6e-06 Score=73.48 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=56.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcC-Cce-eecCCC--------CCHHHHHH
Q 008816 418 VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ-VPI-FEKGYE--------KDPAIVAK 487 (552)
Q Consensus 418 I~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~-v~~-~~~~~~--------~dp~~iar 487 (552)
|+|.|.+|+||||+...|+.++...+.+|+++++|+ . .....+..... ..+ ...+.. -......+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~---~~~~~~~~~~~~~~~~i~~g~~~~~~~g~~~~~n~~~~ 76 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--D---DLPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENALLN 76 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--h---hhHHHHhhccCCceEEEEecccccCCCCCEehhhHHHH
Confidence 789999999999999999999998999999999998 1 12222222211 111 111110 01112445
Q ss_pred HHHHHHHhCCCCEEEEeCCCC
Q 008816 488 EAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 488 ~aIa~a~~~~~DvVIIDtpGr 508 (552)
..+......++|++++||++.
T Consensus 77 ~~l~~~~~~~~~~vivDt~ag 97 (116)
T cd02034 77 ALLRHLVLTRDEQVVVDTEAG 97 (116)
T ss_pred HHHHHeEccCCCEEEEecHHH
Confidence 556665578899999999864
No 476
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=98.16 E-value=9.2e-06 Score=81.93 Aligned_cols=40 Identities=33% Similarity=0.331 Sum_probs=37.1
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+++|+|+|+ .|+||||+.+.||..|...|.+|+.+++|+.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpq 41 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQ 41 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcH
Confidence 358999999 8999999999999999999999999999963
No 477
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=98.14 E-value=4.2e-06 Score=86.68 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=37.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
.++|+|.|..|+||||++..||..+.+.|.+|+++++|+..
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~ 44 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKA 44 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 35888889999999999999999999999999999999853
No 478
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=98.14 E-value=2e-05 Score=69.26 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=35.5
Q ss_pred EEEEEcC-CCCChhHHHHHHHHHHhhC-CceEEEeeecCCcch
Q 008816 417 VVVFVGV-NGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSG 457 (552)
Q Consensus 417 vI~lvG~-nGvGKTTll~kLA~~l~~~-ggkVll~~~D~~r~g 457 (552)
+|+++|. +|+||||+...||..+... |.+|+++++|+.+..
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~ 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC
Confidence 3667655 9999999999999999987 999999999997653
No 479
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=98.13 E-value=1.5e-05 Score=78.82 Aligned_cols=39 Identities=33% Similarity=0.474 Sum_probs=36.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
++.+.|.+|+||||+...+|.++...|.+|+++++|+.+
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH 39 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 367889999999999999999999999999999999877
No 480
>PRK06526 transposase; Provisional
Probab=98.13 E-value=1.3e-05 Score=81.42 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=67.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~ 496 (552)
.+.|+||+|+|||+++..|+..+...|.+|.+..... .++++.... .. ... ...+.. ..
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~----l~~~l~~~~--------~~---~~~----~~~l~~--l~ 158 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQ----WVARLAAAH--------HA---GRL----QAELVK--LG 158 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHH----HHHHHHHHH--------hc---CcH----HHHHHH--hc
Confidence 7899999999999999999998888888887754321 122222110 00 011 112222 35
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEecCc
Q 008816 497 GSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFRGM 540 (552)
Q Consensus 497 ~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~~~ 540 (552)
++|+||||+.|....+......|-.++...+....++++++..+
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~ 202 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPF 202 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCH
Confidence 78999999999887777777777777766655544555544433
No 481
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.13 E-value=8e-06 Score=81.31 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=29.3
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+..++++....++ +++|+||||+||||+++.|+-
T Consensus 19 v~~~~~~~~~~~~--~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 19 IPNDVTLTRGKSR--FLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred EEeeEEEeecCCe--EEEEECCCCCChHHHHHHHHH
Confidence 5677888776666 999999999999999999884
No 482
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.12 E-value=1.7e-06 Score=87.17 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=28.4
Q ss_pred EEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 420 FVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 420 lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
|+||.||||||+++.+..|+...+.++.++..|+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 6899999999999999999999999999999998
No 483
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.11 E-value=1.6e-05 Score=70.94 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=65.5
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhC-----CceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~-----ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aI 490 (552)
.++.|.|++|+||||++..++..+... ...++.+.+.... ....-.....+.++.+... ......+....+
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~l~~~~~ 80 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLKS---RQTSDELRSLLI 80 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSSS---TS-HHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccccc---cCCHHHHHHHHH
Confidence 389999999999999999999887653 5677777766544 3334445566666655432 234444443333
Q ss_pred HHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 491 QEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 491 a~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
.........+|+||++-.+. +...++.|..+..
T Consensus 81 ~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF-SDEFLEFLRSLLN 113 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH-THHHHHHHHHHTC
T ss_pred HHHHhcCCeEEEEeChHhcC-CHHHHHHHHHHHh
Confidence 33333444599999997652 5777888877665
No 484
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=98.11 E-value=2.5e-05 Score=64.26 Aligned_cols=73 Identities=29% Similarity=0.391 Sum_probs=57.6
Q ss_pred hHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHH
Q 008816 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390 (552)
Q Consensus 315 ~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L 390 (552)
..|++.++++.+...++++++++++++|+++|+++||+.+++.+|++.++....+. ........++.++.++|
T Consensus 3 ~~l~kt~~~l~~~~~~~~~~i~~~l~ele~~Li~aDVg~~~a~~i~~~ik~~~~~~---~~~~~~~~v~~~l~~~L 75 (75)
T PF02881_consen 3 KGLSKTFKKLSGSIFLTEKDIEEFLEELEEALIEADVGVEVAEKIIENIKKKLIKK---KGINPREEVKKALKEEL 75 (75)
T ss_dssp HHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCT---TSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccHHhHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhcc---cCCCcHHHHHHHHHHHC
Confidence 34566788888887789999999999999999999999999999999999954441 22334566767776654
No 485
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=1.3e-05 Score=96.87 Aligned_cols=108 Identities=22% Similarity=0.269 Sum_probs=78.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------chHH-HH----------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------SGAV-EQ---------- 461 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------~ga~-eq---------- 461 (552)
.+.|+||+|.+++|+ .++|||+.|+|||+++..|.|.+....|.|.+.+.=-|- .|.+ +.
T Consensus 534 ~~tL~dIn~~i~~G~--lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~ 611 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQ--LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEE 611 (1381)
T ss_pred cccccceeEEecCCC--EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHH
Confidence 348999999999999 999999999999999999999999888877765432110 0100 00
Q ss_pred ----------HHHHHHHc----CCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 462 ----------LRTHARRL----QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 462 ----------L~~~~~~l----~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
|..-.+.+ ...+-++|......+.+|.++|||..++.|+.|+|-|-..
T Consensus 612 rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 612 RYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred HHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 00000111 1223345667778889999999999999999999999643
No 486
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.10 E-value=7e-06 Score=86.09 Aligned_cols=38 Identities=34% Similarity=0.464 Sum_probs=35.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
+++.|+|..||||||+.+.+|.++...|.+|+++.+|+
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 58999999999999999999999999998899999986
No 487
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=98.10 E-value=2.6e-05 Score=83.99 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=37.0
Q ss_pred CcEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeee-cCCc
Q 008816 414 KPYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAAC-DTFR 455 (552)
Q Consensus 414 ~p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~-D~~r 455 (552)
.+++|+|+.. .||||||++..||..+...|.+|+++++ |+..
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~ 148 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQG 148 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCC
Confidence 3568999855 9999999999999999999999999996 8753
No 488
>PRK13236 nitrogenase reductase; Reviewed
Probab=98.09 E-value=9.2e-06 Score=84.20 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
++|+|.|..||||||++..||..|...|.+|+++++|+.
T Consensus 7 ~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q 45 (296)
T PRK13236 7 RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPK 45 (296)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 599999999999999999999999999999999999975
No 489
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.08 E-value=8e-06 Score=87.78 Aligned_cols=125 Identities=23% Similarity=0.193 Sum_probs=73.9
Q ss_pred cCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE----Eee-ecCCcchH---------------------HHH---
Q 008816 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM----MAA-CDTFRSGA---------------------VEQ--- 461 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl----l~~-~D~~r~ga---------------------~eq--- 461 (552)
.+|+ |++|+|+||.||||.++.||+.+.|+=|+.- +.. .+-||-.. ++.
T Consensus 98 r~G~--V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk 175 (591)
T COG1245 98 RPGK--VVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK 175 (591)
T ss_pred CCCc--EEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence 4566 9999999999999999999999998744331 000 00122110 000
Q ss_pred ---------HH---------HHHHHcCCce-eec-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHH
Q 008816 462 ---------LR---------THARRLQVPI-FEK-GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLH 521 (552)
Q Consensus 462 ---------L~---------~~~~~l~v~~-~~~-~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~k 521 (552)
|+ .+.+++++.- +.+ .......++.+.||+.++..+.|+.++|+|....+-.+.+..-.-
T Consensus 176 ~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~ 255 (591)
T COG1245 176 VVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV 255 (591)
T ss_pred HhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHH
Confidence 00 0111112110 000 012233456689999999999999999999977766666655554
Q ss_pred HhhhhccccEEEEEEe
Q 008816 522 IYLHTVCEHFVNIITF 537 (552)
Q Consensus 522 l~~~~~~~~~~~ii~~ 537 (552)
|..+......++++++
T Consensus 256 Irel~~~~k~ViVVEH 271 (591)
T COG1245 256 IRELAEDGKYVIVVEH 271 (591)
T ss_pred HHHHhccCCeEEEEec
Confidence 4444443455566554
No 490
>PRK04296 thymidine kinase; Provisional
Probab=98.07 E-value=1.1e-05 Score=78.39 Aligned_cols=85 Identities=25% Similarity=0.266 Sum_probs=54.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe--eecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--ACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~--~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
++.++|+.|+||||++..++..+...+.+|+++ ..|+ |.+. .....++++++.... ...+..+.. .+.. .
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~-~~~~----~~i~~~lg~~~~~~~-~~~~~~~~~-~~~~-~ 75 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD-RYGE----GKVVSRIGLSREAIP-VSSDTDIFE-LIEE-E 75 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc-cccC----CcEecCCCCcccceE-eCChHHHHH-HHHh-h
Confidence 889999999999999999998888889999988 3354 2221 123445555442210 112222322 1222 3
Q ss_pred hCCCCEEEEeCCCCC
Q 008816 495 RNGSDVVLVDTAGRM 509 (552)
Q Consensus 495 ~~~~DvVIIDtpGr~ 509 (552)
..++|+|+||++..+
T Consensus 76 ~~~~dvviIDEaq~l 90 (190)
T PRK04296 76 GEKIDCVLIDEAQFL 90 (190)
T ss_pred CCCCCEEEEEccccC
Confidence 458999999999765
No 491
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.07 E-value=7.6e-06 Score=81.13 Aligned_cols=33 Identities=33% Similarity=0.447 Sum_probs=27.0
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+..++++.... .+++|+||||+||||+++.|+.
T Consensus 20 v~n~~~l~~~~---~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 20 VPNDTELDPER---QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred EeeeEEecCCc---eEEEEECCCCCChHHHHHHHHH
Confidence 45667766544 4999999999999999999985
No 492
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.07 E-value=4.1e-06 Score=74.25 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=40.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
.+|+++++.+..|+ +++|+||+|+||||++..|. .+.+.+.+.|..
T Consensus 3 ~aL~~vsl~i~~ge--~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~ 48 (107)
T cd00820 3 TSLHGVLVDVYGKV--GVLITGDSGIGKTELALELI------KRKHRLVGDDNV 48 (107)
T ss_pred eEEEeeEEEEcCCE--EEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHH
Confidence 36789999999998 99999999999999999986 677888887763
No 493
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=98.06 E-value=2.9e-05 Score=78.80 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=36.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
++.+.|.+|+||||+.+.+|..+...|.+|+++++|+.
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 78899999999999999999999999999999999984
No 494
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.06 E-value=2.6e-05 Score=77.71 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=32.2
Q ss_pred EEEEEcCCCCChhHHHHHHH-HHHhhCCceEEEeeecC
Q 008816 417 VVVFVGVNGVGKSTNLAKVA-YWLLQHKVSVMMAACDT 453 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA-~~l~~~ggkVll~~~D~ 453 (552)
.|+|+|..|+||||+.+.|+ .++...|.+|+.+++|.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 69999999999999999966 45555669999999997
No 495
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.06 E-value=1.9e-05 Score=74.23 Aligned_cols=39 Identities=31% Similarity=0.338 Sum_probs=34.3
Q ss_pred EEEE-cCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 418 VVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 418 I~lv-G~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
|+|+ +..|+||||++..||..+...|.+|+++++|++..
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~ 41 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLR 41 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 4555 45999999999999999999999999999999654
No 496
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.06 E-value=1.2e-05 Score=83.88 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=55.1
Q ss_pred cccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCC--CCCHHH
Q 008816 407 HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY--EKDPAI 484 (552)
Q Consensus 407 ~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~--~~dp~~ 484 (552)
.+.+..|. .++|+|++|+||||+++.|++++.+..+-|.+- |+...... +... +.++.... +....
T Consensus 138 ~~~v~~~~--~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~-----~~~~--~~l~~~~~~~~~~~~- 205 (308)
T TIGR02788 138 RLAIASRK--NIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLP-----HPNY--VHLFYSKGGQGLAKV- 205 (308)
T ss_pred HHHhhCCC--EEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCC-----CCCE--EEEEecCCCCCcCcc-
Confidence 34456677 999999999999999999999887766544442 43211110 0111 11211111 11111
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 485 VAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 485 iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
-...++..++..+||+|++||+..
T Consensus 206 ~~~~~l~~~Lr~~pd~ii~gE~r~ 229 (308)
T TIGR02788 206 TPKDLLQSCLRMRPDRIILGELRG 229 (308)
T ss_pred CHHHHHHHHhcCCCCeEEEeccCC
Confidence 123566777889999999999973
No 497
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=98.05 E-value=1.3e-05 Score=86.05 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=36.7
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
+++|+|++. .||||||++..||..+...|.+|+++++|+..
T Consensus 104 ~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~ 145 (387)
T TIGR03453 104 LQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA 145 (387)
T ss_pred ceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 468888855 99999999999999999999999999999853
No 498
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.05 E-value=1.2e-05 Score=82.27 Aligned_cols=96 Identities=22% Similarity=0.210 Sum_probs=61.6
Q ss_pred cEEEEEE-cCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHH---------HHH-c-------CCceeec
Q 008816 415 PYVVVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH---------ARR-L-------QVPIFEK 476 (552)
Q Consensus 415 p~vI~lv-G~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~---------~~~-l-------~v~~~~~ 476 (552)
.++|+++ |..|+||||+...||..+...|.+|+++++|.+.+.....+..- ... + ++.....
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi 136 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSI 136 (265)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEE
Confidence 3466666 88999999999999999999999999999999866543322210 000 0 1111110
Q ss_pred ----CCCCCHHHH-----HHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 477 ----GYEKDPAIV-----AKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 477 ----~~~~dp~~i-----ar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
....++... .+..|..+...+||+||||+|....
T Consensus 137 ~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g 179 (265)
T COG0489 137 LPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTG 179 (265)
T ss_pred EecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCch
Confidence 111233222 2455666666669999999997554
No 499
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.05 E-value=3.3e-05 Score=73.42 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=31.2
Q ss_pred EEEE-cCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH
Q 008816 418 VVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA 458 (552)
Q Consensus 418 I~lv-G~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga 458 (552)
|+|+ |..|+||||++..||..+ .+|+++++|.+++..
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~ 39 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNL 39 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCch
Confidence 4444 669999999999999888 789999999987654
No 500
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=98.04 E-value=9.1e-06 Score=84.75 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+++.|.|..||||||+++.+|.++...|.+|+++..|+-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 489999999999999999999999999999999999974
Done!