Query 008816
Match_columns 552
No_of_seqs 461 out of 3076
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:22:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fh5_A Signal recognition part 100.0 1.1E-43 3.8E-48 337.2 11.5 138 1-145 10-156 (185)
2 3dm5_A SRP54, signal recogniti 100.0 5.1E-27 1.7E-31 252.2 29.7 215 313-535 6-220 (443)
3 1j8m_F SRP54, signal recogniti 100.0 3.1E-26 1.1E-30 234.8 28.7 216 313-536 3-221 (297)
4 3kl4_A SRP54, signal recogniti 100.0 1.6E-26 5.6E-31 247.9 26.9 213 316-535 5-219 (433)
5 3e70_C DPA, signal recognition 99.9 1.1E-26 3.7E-31 241.4 24.4 208 325-535 42-249 (328)
6 2ffh_A Protein (FFH); SRP54, s 99.9 4.8E-26 1.6E-30 243.9 29.2 214 313-535 5-218 (425)
7 2xxa_A Signal recognition part 99.9 1.2E-25 4.3E-30 241.5 28.4 216 313-535 5-221 (433)
8 1zu4_A FTSY; GTPase, signal re 99.9 1.3E-25 4.4E-30 232.5 23.0 197 317-525 18-219 (320)
9 3b9q_A Chloroplast SRP recepto 99.9 1.1E-23 3.7E-28 216.4 26.9 190 323-524 20-210 (302)
10 1vma_A Cell division protein F 99.9 5.3E-24 1.8E-28 219.2 23.9 181 320-525 33-214 (306)
11 1ls1_A Signal recognition part 99.9 2E-23 6.9E-28 213.6 27.4 215 313-536 5-219 (295)
12 2yhs_A FTSY, cell division pro 99.9 5.4E-24 1.9E-28 230.9 23.9 183 328-525 221-403 (503)
13 2og2_A Putative signal recogni 99.9 3.6E-23 1.2E-27 217.3 28.4 182 334-524 85-267 (359)
14 2j37_W Signal recognition part 99.9 7.5E-24 2.6E-28 231.3 23.4 215 314-535 7-221 (504)
15 2v3c_C SRP54, signal recogniti 99.9 1E-23 3.5E-28 226.6 21.8 213 313-535 4-218 (432)
16 1rj9_A FTSY, signal recognitio 99.9 1.1E-23 3.7E-28 216.6 20.2 197 317-525 11-212 (304)
17 2px0_A Flagellar biosynthesis 99.8 1.9E-20 6.5E-25 191.7 19.4 174 331-524 34-209 (296)
18 3tif_A Uncharacterized ABC tra 99.5 2.3E-13 7.9E-18 134.5 12.1 118 400-519 18-185 (235)
19 4g1u_C Hemin import ATP-bindin 99.5 2E-13 6.8E-18 137.6 11.2 115 400-516 24-184 (266)
20 3fvq_A Fe(3+) IONS import ATP- 99.5 2E-13 6.8E-18 143.2 11.4 113 400-514 17-173 (359)
21 3tui_C Methionine import ATP-b 99.4 2.3E-13 7.7E-18 143.1 11.5 119 400-520 41-204 (366)
22 3gfo_A Cobalt import ATP-bindi 99.4 2.3E-13 7.9E-18 137.8 11.1 113 401-515 22-179 (275)
23 3rlf_A Maltose/maltodextrin im 99.4 2.5E-13 8.4E-18 143.5 11.1 113 400-514 16-168 (381)
24 1vpl_A ABC transporter, ATP-bi 99.4 6.5E-13 2.2E-17 133.1 12.5 114 400-515 28-182 (256)
25 2pcj_A ABC transporter, lipopr 99.4 5.5E-13 1.9E-17 130.8 11.5 137 400-538 17-199 (224)
26 1z47_A CYSA, putative ABC-tran 99.4 6E-13 2.1E-17 139.4 11.8 112 400-513 28-179 (355)
27 2yyz_A Sugar ABC transporter, 99.4 6.6E-13 2.3E-17 139.3 11.1 112 400-513 16-167 (359)
28 1ji0_A ABC transporter; ATP bi 99.4 1.4E-12 4.7E-17 129.3 12.4 112 401-514 20-174 (240)
29 2olj_A Amino acid ABC transpor 99.4 9.7E-13 3.3E-17 132.4 11.4 113 401-515 38-195 (263)
30 2vx8_A Nucleoporin-like protei 99.4 3.5E-13 1.2E-17 127.1 7.6 113 1-123 44-159 (169)
31 2it1_A 362AA long hypothetical 99.4 7.2E-13 2.5E-17 139.2 10.6 113 400-514 16-168 (362)
32 1g6h_A High-affinity branched- 99.4 1.7E-12 5.8E-17 129.9 12.7 113 401-515 21-189 (257)
33 2ff7_A Alpha-hemolysin translo 99.4 1.3E-12 4.4E-17 130.1 11.2 115 400-516 22-182 (247)
34 1b0u_A Histidine permease; ABC 99.4 8.8E-13 3E-17 132.5 10.0 113 401-515 20-189 (262)
35 1v43_A Sugar-binding transport 99.4 8.1E-13 2.8E-17 139.3 9.9 113 400-514 24-176 (372)
36 3d31_A Sulfate/molybdate ABC t 99.4 1E-12 3.6E-17 137.3 10.6 111 402-514 15-162 (348)
37 2yz2_A Putative ABC transporte 99.4 1.6E-12 5.5E-17 130.7 11.4 115 400-516 20-175 (266)
38 3nh6_A ATP-binding cassette SU 99.4 6.2E-13 2.1E-17 136.7 8.5 113 400-514 67-225 (306)
39 1sgw_A Putative ABC transporte 99.4 1.1E-12 3.6E-17 128.3 9.6 111 401-513 23-167 (214)
40 1g29_1 MALK, maltose transport 99.4 1.5E-12 5.2E-17 137.2 10.9 112 400-513 16-173 (372)
41 2onk_A Molybdate/tungstate ABC 99.4 1.3E-12 4.5E-17 129.6 9.8 110 402-514 14-161 (240)
42 1oxx_K GLCV, glucose, ABC tran 99.4 1.1E-12 3.8E-17 137.3 9.1 110 402-513 20-174 (353)
43 2ihy_A ABC transporter, ATP-bi 99.3 2.8E-12 9.6E-17 130.1 11.4 112 401-514 35-196 (279)
44 2d2e_A SUFC protein; ABC-ATPas 99.3 2.2E-12 7.4E-17 128.6 10.1 114 400-515 16-179 (250)
45 2pjz_A Hypothetical protein ST 99.3 3.3E-12 1.1E-16 128.5 11.4 118 400-522 18-170 (263)
46 1mv5_A LMRA, multidrug resista 99.3 1.6E-12 5.6E-17 128.9 8.7 121 400-522 15-185 (243)
47 2nq2_C Hypothetical ABC transp 99.3 4.4E-12 1.5E-16 126.8 11.8 114 400-515 18-164 (253)
48 2qi9_C Vitamin B12 import ATP- 99.3 3.7E-12 1.3E-16 127.1 10.6 112 401-515 14-169 (249)
49 2ixe_A Antigen peptide transpo 99.3 3.7E-12 1.3E-16 128.6 10.4 115 400-516 32-193 (271)
50 2zu0_C Probable ATP-dependent 99.3 6.1E-12 2.1E-16 126.7 11.5 120 400-522 33-206 (267)
51 2ghi_A Transport protein; mult 99.3 5.8E-12 2E-16 126.3 11.2 111 401-514 34-190 (260)
52 2pze_A Cystic fibrosis transme 99.3 1.1E-11 3.7E-16 122.0 11.3 119 400-521 21-171 (229)
53 3gd7_A Fusion complex of cysti 99.3 6.4E-12 2.2E-16 133.2 9.7 134 400-537 34-212 (390)
54 2cbz_A Multidrug resistance-as 99.3 7.7E-12 2.6E-16 123.7 9.6 121 400-522 18-170 (237)
55 3b5x_A Lipid A export ATP-bind 99.2 3.5E-11 1.2E-15 133.5 12.4 114 400-515 356-516 (582)
56 3qf4_A ABC transporter, ATP-bi 99.2 2.1E-11 7.1E-16 135.6 9.7 114 400-515 356-515 (587)
57 2bbs_A Cystic fibrosis transme 99.2 4.8E-11 1.6E-15 121.7 11.6 118 401-521 52-200 (290)
58 4a82_A Cystic fibrosis transme 99.2 1.4E-11 4.8E-16 136.7 8.2 113 400-514 354-512 (578)
59 2yl4_A ATP-binding cassette SU 99.2 5E-11 1.7E-15 132.6 12.0 112 401-514 358-518 (595)
60 3b60_A Lipid A export ATP-bind 99.2 3.7E-11 1.3E-15 133.3 10.8 114 400-515 356-516 (582)
61 3qf4_B Uncharacterized ABC tra 99.2 2.4E-11 8.4E-16 135.3 9.3 113 400-514 368-526 (598)
62 4f4c_A Multidrug resistance pr 99.1 1.1E-10 3.7E-15 140.8 9.8 112 401-514 1093-1252(1321)
63 3ozx_A RNAse L inhibitor; ATP 99.0 2E-10 7E-15 126.5 8.4 110 404-515 285-421 (538)
64 3g5u_A MCG1178, multidrug resi 99.0 2.4E-10 8.2E-15 137.4 9.7 112 400-513 403-560 (1284)
65 4f4c_A Multidrug resistance pr 99.0 3.3E-10 1.1E-14 136.6 10.1 113 399-513 430-588 (1321)
66 2w0m_A SSO2452; RECA, SSPF, un 99.0 2E-09 6.7E-14 103.0 13.4 104 401-510 10-136 (235)
67 2i3b_A HCR-ntpase, human cance 99.0 9.7E-12 3.3E-16 119.1 -3.0 100 417-524 3-133 (189)
68 3j16_B RLI1P; ribosome recycli 99.0 1E-09 3.6E-14 122.4 11.3 111 402-514 362-502 (608)
69 3g5u_A MCG1178, multidrug resi 99.0 3.2E-10 1.1E-14 136.3 7.4 112 401-514 1047-1206(1284)
70 1yqt_A RNAse L inhibitor; ATP- 99.0 1.3E-09 4.5E-14 120.0 11.1 119 401-522 36-204 (538)
71 4gp7_A Metallophosphoesterase; 99.0 2.1E-10 7.4E-15 107.1 4.0 100 405-512 1-116 (171)
72 3j16_B RLI1P; ribosome recycli 99.0 9.8E-10 3.3E-14 122.7 9.8 105 409-515 99-257 (608)
73 3bk7_A ABC transporter ATP-bin 99.0 1.5E-09 5.2E-14 121.1 10.7 109 404-514 373-506 (607)
74 2eyu_A Twitching motility prot 99.0 2.6E-09 8.8E-14 107.1 11.2 116 401-538 15-132 (261)
75 3ux8_A Excinuclease ABC, A sub 98.9 2.5E-09 8.6E-14 120.5 12.3 32 399-432 30-61 (670)
76 1yqt_A RNAse L inhibitor; ATP- 98.9 1.8E-09 6.1E-14 118.9 10.4 110 403-514 302-436 (538)
77 3bk7_A ABC transporter ATP-bin 98.9 2.3E-09 7.8E-14 119.7 10.8 110 402-514 107-263 (607)
78 2iw3_A Elongation factor 3A; a 98.9 1.8E-09 6.1E-14 125.8 9.6 47 401-449 687-733 (986)
79 1cr0_A DNA primase/helicase; R 98.9 1.2E-08 4E-13 102.9 14.5 109 399-509 21-159 (296)
80 2qm8_A GTPase/ATPase; G protei 98.9 2E-09 6.9E-14 111.7 8.2 109 402-512 44-162 (337)
81 2iw3_A Elongation factor 3A; a 98.8 8E-09 2.7E-13 120.3 11.9 120 401-523 449-591 (986)
82 3ozx_A RNAse L inhibitor; ATP 98.8 3.1E-09 1.1E-13 117.1 8.0 102 411-514 23-173 (538)
83 2pt7_A CAG-ALFA; ATPase, prote 98.8 1.6E-09 5.5E-14 112.2 4.6 92 402-508 160-251 (330)
84 2ehv_A Hypothetical protein PH 98.8 1.5E-08 5.3E-13 98.2 10.3 42 409-452 26-68 (251)
85 3ec2_A DNA replication protein 98.7 7.2E-08 2.5E-12 89.8 12.4 109 410-541 35-145 (180)
86 4a74_A DNA repair and recombin 98.7 3.1E-08 1.1E-12 94.8 8.9 30 410-441 22-51 (231)
87 3ux8_A Excinuclease ABC, A sub 98.7 1.3E-07 4.3E-12 106.6 14.2 34 401-436 336-369 (670)
88 2kjq_A DNAA-related protein; s 98.7 8.7E-08 3E-12 87.8 10.6 100 412-550 35-139 (149)
89 2cvh_A DNA repair and recombin 98.7 2.1E-07 7.2E-12 88.5 13.0 93 410-511 17-119 (220)
90 3p32_A Probable GTPase RV1496/ 98.6 1E-07 3.4E-12 99.3 11.2 98 413-510 77-184 (355)
91 3jvv_A Twitching mobility prot 98.6 3.3E-08 1.1E-12 103.5 7.3 109 410-538 120-230 (356)
92 2p67_A LAO/AO transport system 98.6 8.9E-08 3E-12 99.3 9.7 50 405-456 48-97 (341)
93 4dzz_A Plasmid partitioning pr 98.6 4.6E-07 1.6E-11 85.4 13.7 83 416-509 2-87 (206)
94 2ewv_A Twitching motility prot 98.6 5.4E-08 1.9E-12 102.3 7.5 85 410-507 133-219 (372)
95 1ye8_A Protein THEP1, hypothet 98.6 4.1E-08 1.4E-12 92.7 6.0 121 417-549 2-152 (178)
96 3la6_A Tyrosine-protein kinase 98.6 1.9E-07 6.4E-12 94.7 10.8 97 414-511 91-215 (286)
97 1tf7_A KAIC; homohexamer, hexa 98.6 2.7E-07 9.1E-12 101.0 12.3 53 399-453 24-79 (525)
98 2npi_A Protein CLP1; CLP1-PCF1 98.6 5.6E-09 1.9E-13 112.9 -1.3 44 405-450 130-175 (460)
99 1pzn_A RAD51, DNA repair and r 98.5 6.6E-07 2.3E-11 93.2 14.0 148 348-510 73-244 (349)
100 3b85_A Phosphate starvation-in 98.5 4.3E-09 1.5E-13 102.1 -2.7 35 411-448 20-54 (208)
101 3bfv_A CAPA1, CAPB2, membrane 98.5 1.5E-07 5.2E-12 94.5 8.4 97 414-511 81-205 (271)
102 2dr3_A UPF0273 protein PH0284; 98.5 1.2E-06 4E-11 84.6 13.2 43 409-453 19-61 (247)
103 1tq4_A IIGP1, interferon-induc 98.5 4.8E-09 1.7E-13 111.9 -4.1 131 416-550 70-247 (413)
104 3cio_A ETK, tyrosine-protein k 98.5 2.5E-07 8.7E-12 94.2 8.5 97 414-511 103-227 (299)
105 1htw_A HI0065; nucleotide-bind 98.5 4E-08 1.4E-12 91.3 2.0 49 402-453 22-70 (158)
106 2vf7_A UVRA2, excinuclease ABC 98.5 3.8E-07 1.3E-11 105.1 10.3 37 402-440 512-549 (842)
107 4aby_A DNA repair protein RECN 98.4 4.4E-07 1.5E-11 95.5 10.0 38 400-440 48-85 (415)
108 1hyq_A MIND, cell division inh 98.4 1.5E-06 5.3E-11 85.4 13.0 41 416-456 3-44 (263)
109 3end_A Light-independent proto 98.4 3.7E-06 1.3E-10 84.9 16.0 42 414-455 40-81 (307)
110 2ph1_A Nucleotide-binding prot 98.4 7.8E-07 2.7E-11 88.1 10.5 44 415-458 18-62 (262)
111 1tf7_A KAIC; homohexamer, hexa 98.4 1.2E-06 4.3E-11 95.7 13.1 93 409-509 277-382 (525)
112 1nlf_A Regulatory protein REPA 98.4 1.9E-06 6.6E-11 86.0 13.3 43 409-453 26-78 (279)
113 2gza_A Type IV secretion syste 98.4 4.9E-08 1.7E-12 102.2 1.4 96 402-507 164-262 (361)
114 3ea0_A ATPase, para family; al 98.4 1.1E-06 3.9E-11 85.0 10.4 40 415-454 4-45 (245)
115 1cp2_A CP2, nitrogenase iron p 98.4 1.7E-06 5.8E-11 85.4 11.8 41 416-456 2-42 (269)
116 3q9l_A Septum site-determining 98.4 1.3E-06 4.3E-11 85.5 10.8 41 416-456 3-44 (260)
117 1n0w_A DNA repair protein RAD5 98.4 1.8E-06 6.1E-11 83.3 11.6 97 410-511 21-133 (243)
118 3aez_A Pantothenate kinase; tr 98.4 1.1E-07 3.9E-12 97.6 3.3 43 410-454 87-131 (312)
119 3k9g_A PF-32 protein; ssgcid, 98.4 1.6E-06 5.5E-11 85.7 11.5 42 414-456 26-68 (267)
120 3kjh_A CO dehydrogenase/acetyl 98.4 6.3E-07 2.2E-11 86.6 8.4 38 417-454 2-39 (254)
121 1z6g_A Guanylate kinase; struc 98.3 2.2E-07 7.5E-12 90.1 3.9 42 402-448 12-53 (218)
122 3pih_A Uvrabc system protein A 98.3 3.7E-06 1.3E-10 97.7 14.2 29 402-432 599-627 (916)
123 3thx_B DNA mismatch repair pro 98.3 6.6E-07 2.3E-11 104.0 7.9 36 401-438 661-696 (918)
124 1g3q_A MIND ATPase, cell divis 98.3 2.5E-06 8.5E-11 82.3 10.7 41 416-456 3-44 (237)
125 2r6a_A DNAB helicase, replicat 98.3 7.4E-05 2.5E-09 80.1 23.1 78 373-453 157-242 (454)
126 2www_A Methylmalonic aciduria 98.3 7.8E-07 2.7E-11 92.6 7.1 42 415-456 74-115 (349)
127 2o8b_B DNA mismatch repair pro 98.3 1.9E-07 6.3E-12 109.9 2.6 99 401-514 770-885 (1022)
128 2afh_E Nitrogenase iron protei 98.3 3.1E-06 1.1E-10 84.8 11.2 42 415-456 2-43 (289)
129 3qf7_A RAD50; ABC-ATPase, ATPa 98.3 8.2E-06 2.8E-10 85.4 14.6 59 480-538 280-344 (365)
130 3cwq_A Para family chromosome 98.3 4.4E-06 1.5E-10 80.2 11.3 76 417-508 2-78 (209)
131 2xj4_A MIPZ; replication, cell 98.3 4.3E-06 1.5E-10 84.0 11.6 45 416-460 5-50 (286)
132 3thx_A DNA mismatch repair pro 98.3 1.3E-06 4.5E-11 101.7 8.8 34 402-437 651-684 (934)
133 2ygr_A Uvrabc system protein A 98.2 5.8E-06 2E-10 96.3 13.7 33 402-436 657-689 (993)
134 1wcv_1 SOJ, segregation protei 98.2 4E-06 1.4E-10 82.6 10.6 40 415-454 6-46 (257)
135 2oze_A ORF delta'; para, walke 98.2 6E-06 2E-10 82.9 12.0 40 417-456 36-78 (298)
136 2r6f_A Excinuclease ABC subuni 98.2 6.1E-06 2.1E-10 95.8 13.5 33 402-436 639-671 (972)
137 3hr8_A Protein RECA; alpha and 98.2 1.5E-05 5.1E-10 83.4 14.9 92 410-510 58-152 (356)
138 3fkq_A NTRC-like two-domain pr 98.2 2.6E-05 8.8E-10 81.5 16.6 41 412-452 140-181 (373)
139 1ewq_A DNA mismatch repair pro 98.2 3.6E-06 1.2E-10 96.2 10.9 39 401-444 567-606 (765)
140 3pg5_A Uncharacterized protein 98.2 5.6E-06 1.9E-10 86.3 11.1 41 416-456 2-43 (361)
141 3fwy_A Light-independent proto 98.2 6E-06 2.1E-10 84.8 10.8 40 415-454 48-87 (314)
142 1wb9_A DNA mismatch repair pro 98.2 4.7E-06 1.6E-10 95.8 10.9 35 402-439 597-631 (800)
143 3ez2_A Plasmid partition prote 98.2 1.1E-05 3.7E-10 84.8 12.6 42 413-454 106-154 (398)
144 3lda_A DNA repair protein RAD5 98.1 1.5E-05 5E-10 84.7 13.0 148 348-511 121-287 (400)
145 3iqw_A Tail-anchored protein t 98.1 4.7E-06 1.6E-10 86.4 8.4 40 415-454 16-55 (334)
146 2zr9_A Protein RECA, recombina 98.1 1.3E-05 4.4E-10 83.6 11.6 93 410-510 58-152 (349)
147 1sq5_A Pantothenate kinase; P- 98.1 1.3E-06 4.5E-11 89.1 4.0 41 415-455 80-122 (308)
148 3ug7_A Arsenical pump-driving 98.1 9.1E-06 3.1E-10 84.5 10.1 38 417-454 28-65 (349)
149 2jeo_A Uridine-cytidine kinase 98.1 2E-06 7E-11 84.3 4.8 52 400-453 12-68 (245)
150 2v9p_A Replication protein E1; 98.1 1.7E-06 5.8E-11 88.7 4.3 43 401-448 114-156 (305)
151 3zq6_A Putative arsenical pump 98.1 1.4E-05 4.8E-10 82.0 11.1 38 416-453 15-52 (324)
152 2woo_A ATPase GET3; tail-ancho 98.1 3E-05 1E-09 79.8 13.4 39 416-454 20-58 (329)
153 1yrb_A ATP(GTP)binding protein 98.1 2.7E-06 9.2E-11 83.3 5.3 39 415-454 14-52 (262)
154 3euj_A Chromosome partition pr 98.1 1.4E-06 4.8E-11 94.6 3.2 52 400-454 17-68 (483)
155 1nrj_A Signal recognition part 98.0 1.2E-05 4.1E-10 72.4 6.8 77 1-77 1-93 (158)
156 2wsm_A Hydrogenase expression/ 98.0 1.3E-05 4.4E-10 76.3 7.6 86 415-508 30-119 (221)
157 3io3_A DEHA2D07832P; chaperone 97.9 9.8E-06 3.3E-10 84.5 7.1 39 415-453 18-58 (348)
158 1sxj_E Activator 1 40 kDa subu 97.9 5.6E-06 1.9E-10 84.7 5.0 35 418-452 39-74 (354)
159 2r8r_A Sensor protein; KDPD, P 97.9 3.7E-06 1.3E-10 82.7 3.4 44 412-456 4-47 (228)
160 3tqc_A Pantothenate kinase; bi 97.9 1.6E-05 5.6E-10 82.0 8.3 45 412-456 89-135 (321)
161 2oap_1 GSPE-2, type II secreti 97.9 1.8E-06 6E-11 94.6 1.0 91 402-507 249-343 (511)
162 1e69_A Chromosome segregation 97.9 7.1E-05 2.4E-09 76.6 12.8 31 406-439 18-48 (322)
163 2obl_A ESCN; ATPase, hydrolase 97.9 4.3E-06 1.5E-10 87.1 3.7 50 400-452 59-108 (347)
164 1byi_A Dethiobiotin synthase; 97.9 3.8E-05 1.3E-09 73.3 10.1 35 416-450 2-37 (224)
165 1v5w_A DMC1, meiotic recombina 97.9 4.5E-05 1.5E-09 78.9 11.3 149 347-509 64-231 (343)
166 3tr0_A Guanylate kinase, GMP k 97.9 6.2E-06 2.1E-10 77.6 4.3 31 408-440 2-32 (205)
167 3c8u_A Fructokinase; YP_612366 97.9 8.9E-06 3.1E-10 77.6 5.2 42 411-454 20-61 (208)
168 3ez9_A Para; DNA binding, wing 97.9 9.5E-06 3.3E-10 85.5 5.9 43 413-455 109-158 (403)
169 2z43_A DNA repair and recombin 97.9 3.1E-05 1.1E-09 79.3 9.7 93 410-509 104-215 (324)
170 1u94_A RECA protein, recombina 97.9 7.3E-05 2.5E-09 78.1 12.5 93 410-511 60-155 (356)
171 3igf_A ALL4481 protein; two-do 97.9 1.2E-05 4.2E-10 84.6 6.5 36 416-451 3-38 (374)
172 1znw_A Guanylate kinase, GMP k 97.9 6.2E-06 2.1E-10 78.7 3.8 35 402-440 11-45 (207)
173 2i1q_A DNA repair and recombin 97.8 6.7E-05 2.3E-09 76.4 11.2 146 348-509 41-216 (322)
174 1fnn_A CDC6P, cell division co 97.8 0.00023 7.8E-09 73.0 15.1 102 417-524 46-150 (389)
175 3lnc_A Guanylate kinase, GMP k 97.8 4.8E-06 1.6E-10 80.7 2.3 35 403-439 17-52 (231)
176 1rz3_A Hypothetical protein rb 97.8 1.5E-05 5.2E-10 75.7 5.7 42 415-456 22-63 (201)
177 2dpy_A FLII, flagellum-specifi 97.8 7.6E-06 2.6E-10 87.9 3.8 49 400-451 145-193 (438)
178 2x8a_A Nuclear valosin-contain 97.8 3.1E-05 1E-09 77.7 7.6 49 399-453 32-80 (274)
179 1xp8_A RECA protein, recombina 97.8 0.00018 6.2E-09 75.4 13.2 90 410-510 71-165 (366)
180 2qag_B Septin-6, protein NEDD5 97.8 5.6E-05 1.9E-09 80.8 9.4 35 403-439 30-66 (427)
181 3asz_A Uridine kinase; cytidin 97.8 1.8E-05 6.2E-10 75.0 5.1 36 416-454 7-42 (211)
182 1ihu_A Arsenical pump-driving 97.7 6.7E-05 2.3E-09 83.0 9.9 39 415-453 8-46 (589)
183 3bos_A Putative DNA replicatio 97.7 4.9E-05 1.7E-09 72.3 7.7 37 417-453 54-90 (242)
184 2q6t_A DNAB replication FORK h 97.7 0.0019 6.6E-08 68.9 20.5 49 403-453 190-239 (444)
185 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 8.1E-05 2.8E-09 73.7 8.9 40 415-454 4-43 (260)
186 1sxj_C Activator 1 40 kDa subu 97.7 2.8E-05 9.5E-10 79.7 5.7 102 408-535 39-146 (340)
187 2woj_A ATPase GET3; tail-ancho 97.7 8.2E-05 2.8E-09 77.5 9.3 38 417-454 20-59 (354)
188 3sop_A Neuronal-specific septi 97.7 1.8E-05 6.1E-10 79.5 4.0 38 416-453 3-40 (270)
189 3a00_A Guanylate kinase, GMP k 97.7 1.4E-05 4.9E-10 74.8 2.8 26 416-441 2-27 (186)
190 3szr_A Interferon-induced GTP- 97.7 9.3E-06 3.2E-10 90.6 1.6 36 417-452 47-83 (608)
191 2b8t_A Thymidine kinase; deoxy 97.7 2.9E-05 9.9E-10 76.1 4.7 100 412-523 11-113 (223)
192 1p9r_A General secretion pathw 97.7 2.5E-05 8.4E-10 83.4 4.4 40 412-453 166-205 (418)
193 3bh0_A DNAB-like replicative h 97.7 0.0002 7E-09 73.1 11.1 49 403-453 58-106 (315)
194 3vaa_A Shikimate kinase, SK; s 97.7 2.7E-05 9.1E-10 73.7 4.2 41 397-439 9-49 (199)
195 1zp6_A Hypothetical protein AT 97.6 2E-05 6.7E-10 73.4 3.1 37 410-450 6-42 (191)
196 2hf9_A Probable hydrogenase ni 97.6 6.5E-05 2.2E-09 71.6 6.2 90 414-509 37-130 (226)
197 4a1f_A DNAB helicase, replicat 97.6 0.00044 1.5E-08 71.7 12.7 104 410-522 43-150 (338)
198 2z4s_A Chromosomal replication 97.6 0.00015 5.2E-09 77.5 9.5 89 415-523 130-220 (440)
199 1l8q_A Chromosomal replication 97.6 0.00016 5.6E-09 73.3 9.2 86 417-523 39-124 (324)
200 1s96_A Guanylate kinase, GMP k 97.6 2.5E-05 8.4E-10 76.1 2.8 41 410-452 13-55 (219)
201 2qby_A CDC6 homolog 1, cell di 97.6 0.00013 4.5E-09 74.4 8.4 92 415-509 45-140 (386)
202 3syl_A Protein CBBX; photosynt 97.6 0.0026 8.7E-08 63.5 17.7 99 416-537 68-177 (309)
203 3uie_A Adenylyl-sulfate kinase 97.6 4E-05 1.4E-09 72.5 4.1 41 410-452 22-62 (200)
204 4fcw_A Chaperone protein CLPB; 97.6 0.00077 2.6E-08 67.3 13.7 97 416-524 48-144 (311)
205 4eun_A Thermoresistant glucoki 97.6 8.4E-05 2.9E-09 70.3 6.2 37 411-453 27-63 (200)
206 1xx6_A Thymidine kinase; NESG, 97.5 5.7E-05 2E-09 72.1 4.8 95 416-523 9-105 (191)
207 4eaq_A DTMP kinase, thymidylat 97.5 0.0013 4.4E-08 64.1 14.2 33 416-449 27-59 (229)
208 2w58_A DNAI, primosome compone 97.5 6.3E-05 2.2E-09 70.8 4.6 37 416-452 55-91 (202)
209 1iy2_A ATP-dependent metallopr 97.5 7.3E-05 2.5E-09 74.4 5.2 43 401-449 63-105 (278)
210 1gvn_B Zeta; postsegregational 97.5 0.00016 5.5E-09 73.0 7.7 62 380-456 10-71 (287)
211 3qkt_A DNA double-strand break 97.5 0.0015 5.2E-08 67.1 15.3 53 487-539 262-314 (339)
212 2yvu_A Probable adenylyl-sulfa 97.5 9.1E-05 3.1E-09 68.9 5.1 40 415-454 13-52 (186)
213 1knq_A Gluconate kinase; ALFA/ 97.5 0.00025 8.4E-09 65.1 7.9 24 416-439 9-32 (175)
214 1lvg_A Guanylate kinase, GMP k 97.5 5.3E-05 1.8E-09 72.0 3.4 27 412-440 3-29 (198)
215 1pui_A ENGB, probable GTP-bind 97.5 0.00018 6.3E-09 67.4 7.0 34 402-439 17-50 (210)
216 2p5t_B PEZT; postsegregational 97.4 0.00027 9.2E-09 69.6 8.5 41 414-457 31-71 (253)
217 3bgw_A DNAB-like replicative h 97.4 0.002 6.9E-08 69.0 15.8 43 409-453 193-235 (444)
218 1lw7_A Transcriptional regulat 97.4 3.8E-05 1.3E-09 79.9 2.1 44 403-448 158-207 (365)
219 3llm_A ATP-dependent RNA helic 97.4 0.00067 2.3E-08 65.7 10.6 109 412-524 75-204 (235)
220 3cmw_A Protein RECA, recombina 97.4 0.0055 1.9E-07 75.3 20.6 90 410-510 729-823 (1706)
221 2j41_A Guanylate kinase; GMP, 97.4 7.7E-05 2.6E-09 70.0 3.2 30 410-441 3-32 (207)
222 2ce7_A Cell division protein F 97.4 0.00063 2.1E-08 73.7 10.7 69 417-508 51-119 (476)
223 2bdt_A BH3686; alpha-beta prot 97.4 0.00014 4.8E-09 67.7 4.9 32 416-450 3-34 (189)
224 1xjc_A MOBB protein homolog; s 97.4 0.00018 6.1E-09 67.5 5.5 40 415-454 4-43 (169)
225 2v1u_A Cell division control p 97.4 0.00087 3E-08 68.4 11.2 93 414-510 43-143 (387)
226 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.0045 1.5E-07 59.9 15.7 72 415-509 39-110 (262)
227 3kta_A Chromosome segregation 97.3 0.00012 4E-09 67.7 4.1 36 404-442 18-53 (182)
228 2f1r_A Molybdopterin-guanine d 97.3 6.2E-05 2.1E-09 70.6 2.0 39 416-454 3-44 (171)
229 3b9p_A CG5977-PA, isoform A; A 97.3 0.001 3.5E-08 66.2 11.1 71 416-509 55-125 (297)
230 3d8b_A Fidgetin-like protein 1 97.3 0.0015 5.1E-08 67.6 12.3 70 415-507 117-186 (357)
231 3m6a_A ATP-dependent protease 97.3 0.00029 9.8E-09 77.5 7.2 41 404-447 100-140 (543)
232 1u0l_A Probable GTPase ENGC; p 97.3 5.9E-05 2E-09 76.6 1.6 41 412-454 168-211 (301)
233 1kgd_A CASK, peripheral plasma 97.3 0.00013 4.5E-09 67.9 3.7 27 412-440 4-30 (180)
234 2xau_A PRE-mRNA-splicing facto 97.2 0.00036 1.2E-08 79.9 7.7 108 412-523 108-235 (773)
235 1ixz_A ATP-dependent metallopr 97.2 0.00011 3.9E-09 71.7 3.0 44 401-450 39-82 (254)
236 2pez_A Bifunctional 3'-phospho 97.2 0.00018 6.2E-09 66.5 4.1 37 416-452 6-42 (179)
237 3nwj_A ATSK2; P loop, shikimat 97.2 8.8E-05 3E-09 73.7 2.1 39 400-440 32-73 (250)
238 1q57_A DNA primase/helicase; d 97.2 0.003 1E-07 68.3 14.3 42 410-453 239-281 (503)
239 2zts_A Putative uncharacterize 97.2 0.0017 6E-08 62.1 11.2 42 410-453 27-69 (251)
240 1odf_A YGR205W, hypothetical 3 97.2 0.00018 6.1E-09 73.0 4.1 43 413-455 29-74 (290)
241 2vp4_A Deoxynucleoside kinase; 97.2 0.00012 4.1E-09 71.0 2.6 37 411-453 18-54 (230)
242 1qhl_A Protein (cell division 97.2 2.4E-05 8.3E-10 76.8 -2.4 37 417-453 29-65 (227)
243 3t61_A Gluconokinase; PSI-biol 97.2 0.00055 1.9E-08 64.4 6.8 36 415-455 18-53 (202)
244 2qby_B CDC6 homolog 3, cell di 97.2 0.00095 3.3E-08 68.4 9.2 92 415-509 45-145 (384)
245 2yv5_A YJEQ protein; hydrolase 97.2 0.00014 4.7E-09 74.0 2.5 39 412-453 164-205 (302)
246 3tau_A Guanylate kinase, GMP k 97.1 0.00019 6.5E-09 68.5 3.2 28 412-441 7-34 (208)
247 1np6_A Molybdopterin-guanine d 97.1 0.00047 1.6E-08 64.8 5.6 38 416-453 7-44 (174)
248 3io5_A Recombination and repai 97.1 0.0014 4.8E-08 67.6 9.4 86 417-509 30-123 (333)
249 1svm_A Large T antigen; AAA+ f 97.1 0.00028 9.6E-09 74.3 4.3 43 401-448 157-199 (377)
250 2chg_A Replication factor C sm 97.1 0.00082 2.8E-08 62.4 7.1 27 417-443 40-66 (226)
251 3cr8_A Sulfate adenylyltranfer 97.1 0.00027 9.4E-09 77.9 4.2 43 410-454 366-409 (552)
252 3h4m_A Proteasome-activating n 97.1 0.0015 5.2E-08 64.5 9.2 69 417-508 53-121 (285)
253 2qag_C Septin-7; cell cycle, c 97.1 0.00066 2.3E-08 72.4 6.9 32 401-440 25-56 (418)
254 4afi_A AP-3 complex subunit de 97.1 0.0077 2.6E-07 56.6 13.4 104 4-120 57-166 (173)
255 1nks_A Adenylate kinase; therm 97.0 0.0005 1.7E-08 63.3 5.1 36 416-451 2-37 (194)
256 1t9h_A YLOQ, probable GTPase E 97.0 0.0001 3.5E-09 75.5 0.4 37 410-448 170-206 (307)
257 1kag_A SKI, shikimate kinase I 97.0 0.00025 8.5E-09 64.7 2.9 24 417-440 6-29 (173)
258 1m7g_A Adenylylsulfate kinase; 97.0 0.00029 9.8E-09 67.1 3.4 39 416-454 26-65 (211)
259 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.0017 6E-08 66.9 9.4 37 410-451 120-156 (331)
260 1lv7_A FTSH; alpha/beta domain 97.0 0.0011 3.7E-08 64.8 7.5 24 417-440 47-70 (257)
261 3cmu_A Protein RECA, recombina 97.0 0.0025 8.7E-08 79.2 12.2 90 410-507 1424-1515(2050)
262 3ice_A Transcription terminati 97.0 0.0024 8.1E-08 67.6 10.3 113 406-524 167-305 (422)
263 2bbw_A Adenylate kinase 4, AK4 97.0 0.00037 1.3E-08 68.0 3.8 24 415-438 27-50 (246)
264 3te6_A Regulatory protein SIR3 97.0 0.0052 1.8E-07 63.1 12.6 105 412-522 42-156 (318)
265 1g5t_A COB(I)alamin adenosyltr 97.0 0.0031 1E-07 60.5 10.1 88 417-508 30-131 (196)
266 2qgz_A Helicase loader, putati 97.0 0.00055 1.9E-08 69.7 5.1 36 417-452 154-190 (308)
267 1sxj_D Activator 1 41 kDa subu 97.0 0.00064 2.2E-08 68.9 5.4 24 417-440 60-83 (353)
268 3t15_A Ribulose bisphosphate c 97.0 0.0016 5.4E-08 65.6 8.2 33 415-450 36-68 (293)
269 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.0058 2E-07 62.4 12.4 72 416-509 46-117 (322)
270 1njg_A DNA polymerase III subu 96.9 0.0038 1.3E-07 58.3 10.3 28 416-443 46-73 (250)
271 2qt1_A Nicotinamide riboside k 96.9 0.00038 1.3E-08 65.8 3.2 36 415-454 21-56 (207)
272 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00086 2.9E-08 73.1 5.9 46 401-452 54-99 (499)
273 4e22_A Cytidylate kinase; P-lo 96.9 0.00014 4.9E-09 71.7 -0.4 24 411-436 25-48 (252)
274 3lv8_A DTMP kinase, thymidylat 96.8 0.0078 2.7E-07 59.1 12.0 34 416-449 28-62 (236)
275 1kht_A Adenylate kinase; phosp 96.8 0.00072 2.5E-08 62.2 4.2 35 416-450 4-38 (192)
276 2rcn_A Probable GTPase ENGC; Y 96.8 0.00036 1.2E-08 72.9 2.4 36 412-449 214-250 (358)
277 1gtv_A TMK, thymidylate kinase 96.8 0.00039 1.3E-08 65.6 2.3 33 417-449 2-34 (214)
278 3ney_A 55 kDa erythrocyte memb 96.8 0.00064 2.2E-08 65.3 3.9 27 412-440 18-44 (197)
279 1ly1_A Polynucleotide kinase; 96.8 0.00056 1.9E-08 62.3 3.3 23 415-437 2-24 (181)
280 1uj2_A Uridine-cytidine kinase 96.8 0.0009 3.1E-08 65.6 4.9 43 412-454 19-66 (252)
281 1cke_A CK, MSSA, protein (cyti 96.8 0.00071 2.4E-08 64.4 3.8 24 416-439 6-29 (227)
282 1ihu_A Arsenical pump-driving 96.8 0.00069 2.4E-08 74.8 4.0 38 417-454 329-366 (589)
283 3e1s_A Exodeoxyribonuclease V, 96.7 0.0024 8.1E-08 70.7 8.0 38 417-455 206-243 (574)
284 1in4_A RUVB, holliday junction 96.7 0.00034 1.2E-08 71.8 1.0 24 416-439 52-75 (334)
285 2j9r_A Thymidine kinase; TK1, 96.7 0.0016 5.6E-08 63.2 5.7 95 416-523 29-125 (214)
286 1jjv_A Dephospho-COA kinase; P 96.7 0.00085 2.9E-08 63.2 3.7 22 416-437 3-24 (206)
287 3eie_A Vacuolar protein sortin 96.7 0.0053 1.8E-07 62.3 9.8 72 415-509 51-122 (322)
288 2qp9_X Vacuolar protein sortin 96.7 0.0056 1.9E-07 63.4 10.1 71 417-510 86-156 (355)
289 2qnr_A Septin-2, protein NEDD5 96.7 0.00049 1.7E-08 69.9 2.0 32 417-449 20-52 (301)
290 1nij_A Hypothetical protein YJ 96.7 0.00054 1.9E-08 70.0 2.3 37 416-452 5-49 (318)
291 2orv_A Thymidine kinase; TP4A 96.7 0.0039 1.3E-07 61.4 8.2 82 416-510 20-103 (234)
292 3v9p_A DTMP kinase, thymidylat 96.7 0.013 4.3E-07 57.3 11.8 36 412-449 24-63 (227)
293 3uk6_A RUVB-like 2; hexameric 96.6 0.013 4.5E-07 59.8 12.3 37 416-452 71-107 (368)
294 1a7j_A Phosphoribulokinase; tr 96.6 0.00085 2.9E-08 67.8 3.2 41 415-455 5-45 (290)
295 2axn_A 6-phosphofructo-2-kinas 96.6 0.0055 1.9E-07 67.0 9.9 43 413-455 33-75 (520)
296 3kb2_A SPBC2 prophage-derived 96.6 0.0011 3.8E-08 59.8 3.7 34 416-454 2-35 (173)
297 2if2_A Dephospho-COA kinase; a 96.6 0.001 3.4E-08 62.5 3.4 22 416-437 2-23 (204)
298 3cmw_A Protein RECA, recombina 96.6 0.0099 3.4E-07 73.1 12.9 93 410-510 380-474 (1706)
299 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0013 4.4E-08 59.8 4.0 24 416-439 24-47 (149)
300 3u61_B DNA polymerase accessor 96.6 0.0096 3.3E-07 59.9 10.8 36 415-453 48-83 (324)
301 1y63_A LMAJ004144AAA protein; 96.6 0.0014 4.8E-08 61.0 4.2 31 406-438 3-33 (184)
302 1oix_A RAS-related protein RAB 96.6 0.0008 2.7E-08 62.7 2.5 26 415-440 29-54 (191)
303 3vfd_A Spastin; ATPase, microt 96.6 0.0083 2.8E-07 62.6 10.5 71 416-509 149-219 (389)
304 2f6r_A COA synthase, bifunctio 96.6 0.0043 1.5E-07 62.2 7.9 36 412-453 72-107 (281)
305 2gk6_A Regulator of nonsense t 96.6 0.0095 3.2E-07 66.4 11.5 53 417-472 197-250 (624)
306 2z0h_A DTMP kinase, thymidylat 96.5 0.0022 7.5E-08 59.4 5.3 33 417-449 2-34 (197)
307 2e87_A Hypothetical protein PH 96.5 0.00074 2.5E-08 69.9 2.2 25 414-438 166-190 (357)
308 2plr_A DTMP kinase, probable t 96.5 0.0024 8.2E-08 59.7 5.4 32 416-448 5-36 (213)
309 2grj_A Dephospho-COA kinase; T 96.5 0.0079 2.7E-07 57.1 8.8 35 415-454 12-46 (192)
310 3ld9_A DTMP kinase, thymidylat 96.5 0.0032 1.1E-07 61.5 6.1 39 414-452 20-59 (223)
311 1nn5_A Similar to deoxythymidy 96.5 0.0024 8.1E-08 60.0 5.1 35 415-449 9-43 (215)
312 2wwf_A Thymidilate kinase, put 96.5 0.0045 1.5E-07 58.0 7.0 34 415-448 10-43 (212)
313 2qor_A Guanylate kinase; phosp 96.5 0.0013 4.4E-08 62.2 3.2 28 411-440 10-37 (204)
314 1ypw_A Transitional endoplasmi 96.5 0.0051 1.8E-07 70.7 8.7 72 410-507 235-307 (806)
315 2o5v_A DNA replication and rep 96.5 0.0015 5.1E-08 68.2 3.9 33 403-438 17-49 (359)
316 1d2n_A N-ethylmaleimide-sensit 96.5 0.01 3.4E-07 58.4 9.7 25 415-439 64-88 (272)
317 3cmu_A Protein RECA, recombina 96.4 0.011 3.8E-07 73.5 12.0 126 402-538 1068-1216(2050)
318 2rhm_A Putative kinase; P-loop 96.4 0.0019 6.4E-08 59.6 4.1 25 415-439 5-29 (193)
319 1w5s_A Origin recognition comp 96.4 0.012 4.1E-07 60.7 10.5 91 415-509 50-150 (412)
320 3t34_A Dynamin-related protein 96.4 0.00069 2.4E-08 70.1 1.0 31 402-437 26-56 (360)
321 3cf0_A Transitional endoplasmi 96.4 0.0043 1.5E-07 62.5 6.8 68 417-507 51-118 (301)
322 2v54_A DTMP kinase, thymidylat 96.4 0.0031 1E-07 58.8 5.4 33 416-450 5-37 (204)
323 3cm0_A Adenylate kinase; ATP-b 96.4 0.0019 6.6E-08 59.4 3.9 24 416-439 5-28 (186)
324 1tev_A UMP-CMP kinase; ploop, 96.4 0.0021 7.2E-08 59.1 4.2 25 415-439 3-27 (196)
325 2pbr_A DTMP kinase, thymidylat 96.4 0.003 1E-07 58.2 5.2 33 417-449 2-34 (195)
326 3izq_1 HBS1P, elongation facto 96.4 0.0022 7.4E-08 71.6 4.8 103 319-437 43-189 (611)
327 3k1j_A LON protease, ATP-depen 96.4 0.0013 4.3E-08 73.1 2.9 48 402-451 49-96 (604)
328 1qhx_A CPT, protein (chloramph 96.4 0.0018 6E-08 59.3 3.4 25 416-440 4-28 (178)
329 3pxi_A Negative regulator of g 96.4 0.019 6.4E-07 65.2 12.5 81 417-523 523-603 (758)
330 2f9l_A RAB11B, member RAS onco 96.4 0.002 6.8E-08 60.1 3.7 23 416-438 6-28 (199)
331 1jbk_A CLPB protein; beta barr 96.3 0.0024 8.2E-08 57.7 4.1 36 416-451 44-86 (195)
332 3of5_A Dethiobiotin synthetase 96.3 0.012 4.1E-07 57.3 9.3 35 415-449 4-39 (228)
333 3n70_A Transport activator; si 96.3 0.0076 2.6E-07 53.9 7.1 36 417-453 26-61 (145)
334 2orw_A Thymidine kinase; TMTK, 96.3 0.0044 1.5E-07 58.2 5.8 95 417-524 5-101 (184)
335 1sxj_B Activator 1 37 kDa subu 96.3 0.0046 1.6E-07 61.5 6.1 25 417-441 44-68 (323)
336 3lw7_A Adenylate kinase relate 96.3 0.0029 1E-07 56.7 4.2 20 416-435 2-21 (179)
337 3e2i_A Thymidine kinase; Zn-bi 96.2 0.0042 1.4E-07 60.5 5.3 95 416-523 29-125 (219)
338 1qf9_A UMP/CMP kinase, protein 96.2 0.003 1E-07 58.0 4.1 25 415-439 6-30 (194)
339 3trf_A Shikimate kinase, SK; a 96.2 0.0027 9.2E-08 58.5 3.8 24 416-439 6-29 (185)
340 2ze6_A Isopentenyl transferase 96.2 0.0028 9.6E-08 62.5 4.2 24 416-439 2-25 (253)
341 2c95_A Adenylate kinase 1; tra 96.2 0.0027 9.1E-08 58.8 3.8 25 415-439 9-33 (196)
342 1ukz_A Uridylate kinase; trans 96.2 0.003 1E-07 59.1 4.2 28 412-439 12-39 (203)
343 1iqp_A RFCS; clamp loader, ext 96.2 0.0061 2.1E-07 60.7 6.6 25 417-441 48-72 (327)
344 2bwj_A Adenylate kinase 5; pho 96.2 0.0028 9.5E-08 58.8 3.8 24 416-439 13-36 (199)
345 3zvl_A Bifunctional polynucleo 96.2 0.009 3.1E-07 63.3 8.1 38 413-455 256-293 (416)
346 1uf9_A TT1252 protein; P-loop, 96.2 0.0031 1.1E-07 58.7 4.0 35 413-453 6-40 (203)
347 4b4t_M 26S protease regulatory 96.2 0.0055 1.9E-07 65.6 6.4 69 415-506 215-283 (434)
348 1w36_D RECD, exodeoxyribonucle 96.2 0.0056 1.9E-07 68.1 6.8 38 417-455 166-207 (608)
349 2wjy_A Regulator of nonsense t 96.2 0.019 6.5E-07 66.0 11.3 53 417-472 373-426 (800)
350 1w1w_A Structural maintenance 96.2 0.0027 9.3E-08 67.3 4.0 30 410-441 23-52 (430)
351 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0026 8.8E-08 66.4 3.7 34 407-440 16-49 (359)
352 2cdn_A Adenylate kinase; phosp 96.1 0.0036 1.2E-07 58.7 4.3 28 412-439 17-44 (201)
353 2jaq_A Deoxyguanosine kinase; 96.1 0.003 1E-07 58.6 3.7 24 417-440 2-25 (205)
354 3pvs_A Replication-associated 96.1 0.0082 2.8E-07 64.3 7.6 29 412-440 47-75 (447)
355 3upu_A ATP-dependent DNA helic 96.1 0.016 5.5E-07 61.9 9.8 33 417-449 47-80 (459)
356 1via_A Shikimate kinase; struc 96.1 0.0027 9.1E-08 58.2 3.1 24 417-440 6-29 (175)
357 3d3q_A TRNA delta(2)-isopenten 96.1 0.0048 1.6E-07 64.0 5.3 34 416-454 8-41 (340)
358 3sr0_A Adenylate kinase; phosp 96.1 0.0055 1.9E-07 58.9 5.4 37 417-457 2-38 (206)
359 3hu3_A Transitional endoplasmi 96.1 0.015 5E-07 63.1 9.3 69 415-506 238-306 (489)
360 4b4t_I 26S protease regulatory 96.1 0.0093 3.2E-07 63.7 7.4 69 415-506 216-284 (437)
361 3umf_A Adenylate kinase; rossm 96.1 0.0039 1.3E-07 60.6 4.1 39 414-456 28-66 (217)
362 4b4t_K 26S protease regulatory 96.0 0.021 7.3E-07 60.9 10.2 69 415-506 206-274 (428)
363 2p65_A Hypothetical protein PF 96.0 0.0051 1.7E-07 55.6 4.6 25 417-441 45-69 (187)
364 3qks_A DNA double-strand break 96.0 0.0042 1.4E-07 59.2 4.2 26 415-440 23-48 (203)
365 4b4t_L 26S protease subunit RP 96.0 0.016 5.6E-07 62.0 9.1 69 415-506 215-283 (437)
366 2zan_A Vacuolar protein sortin 96.0 0.006 2.1E-07 65.1 5.7 72 416-509 168-239 (444)
367 2vli_A Antibiotic resistance p 96.0 0.0027 9.3E-08 58.1 2.5 26 415-440 5-30 (183)
368 4dhe_A Probable GTP-binding pr 96.0 0.012 4.1E-07 55.4 7.0 23 415-437 29-51 (223)
369 1ni3_A YCHF GTPase, YCHF GTP-b 96.0 0.0034 1.2E-07 66.4 3.4 26 410-437 17-42 (392)
370 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0057 2E-07 63.8 5.1 35 417-451 37-71 (392)
371 1udx_A The GTP-binding protein 95.9 0.0016 5.4E-08 69.4 0.7 33 404-438 148-180 (416)
372 2gno_A DNA polymerase III, gam 95.9 0.018 6.2E-07 58.5 8.5 97 413-536 16-119 (305)
373 1jr3_A DNA polymerase III subu 95.9 0.015 5.2E-07 59.1 8.0 27 416-442 39-65 (373)
374 1aky_A Adenylate kinase; ATP:A 95.9 0.0048 1.6E-07 58.8 3.9 25 415-439 4-28 (220)
375 1zak_A Adenylate kinase; ATP:A 95.9 0.0039 1.3E-07 59.5 3.2 26 415-440 5-30 (222)
376 3qxc_A Dethiobiotin synthetase 95.9 0.034 1.2E-06 54.8 10.1 36 415-450 21-57 (242)
377 1vht_A Dephospho-COA kinase; s 95.9 0.0048 1.6E-07 58.6 3.8 23 415-437 4-26 (218)
378 3iij_A Coilin-interacting nucl 95.9 0.0051 1.8E-07 56.5 3.9 24 416-439 12-35 (180)
379 4edh_A DTMP kinase, thymidylat 95.9 0.0082 2.8E-07 57.9 5.5 34 416-449 7-40 (213)
380 3fgn_A Dethiobiotin synthetase 95.8 0.026 8.8E-07 56.0 9.0 36 415-450 26-62 (251)
381 1e6c_A Shikimate kinase; phosp 95.8 0.0044 1.5E-07 56.2 3.2 24 416-439 3-26 (173)
382 1um8_A ATP-dependent CLP prote 95.8 0.014 4.8E-07 60.3 7.5 34 417-453 74-107 (376)
383 2wji_A Ferrous iron transport 95.8 0.0039 1.3E-07 56.3 2.9 22 416-437 4-25 (165)
384 4b4t_J 26S protease regulatory 95.8 0.009 3.1E-07 63.3 5.9 67 417-506 184-250 (405)
385 1zd8_A GTP:AMP phosphotransfer 95.8 0.0045 1.5E-07 59.3 3.3 25 415-439 7-31 (227)
386 4tmk_A Protein (thymidylate ki 95.8 0.017 6E-07 55.7 7.3 33 417-449 5-38 (213)
387 1ofh_A ATP-dependent HSL prote 95.8 0.016 5.5E-07 57.3 7.3 36 415-453 50-85 (310)
388 3r20_A Cytidylate kinase; stru 95.7 0.0056 1.9E-07 60.1 3.8 25 415-439 9-33 (233)
389 1a5t_A Delta prime, HOLB; zinc 95.7 0.046 1.6E-06 55.7 10.8 114 415-536 24-145 (334)
390 2iyv_A Shikimate kinase, SK; t 95.7 0.0047 1.6E-07 56.8 3.0 23 417-439 4-26 (184)
391 2xzl_A ATP-dependent helicase 95.7 0.039 1.3E-06 63.4 11.1 53 417-472 377-430 (802)
392 3crm_A TRNA delta(2)-isopenten 95.7 0.0086 2.9E-07 61.7 5.0 34 415-453 5-38 (323)
393 2wjg_A FEOB, ferrous iron tran 95.7 0.0052 1.8E-07 56.0 3.1 23 415-437 7-29 (188)
394 1ltq_A Polynucleotide kinase; 95.7 0.0045 1.5E-07 61.7 2.8 36 415-454 2-37 (301)
395 2r62_A Cell division protease 95.7 0.0014 4.8E-08 64.2 -1.0 24 417-440 46-69 (268)
396 3hjn_A DTMP kinase, thymidylat 95.6 0.024 8.3E-07 53.8 7.7 49 417-466 2-50 (197)
397 3cf2_A TER ATPase, transitiona 95.6 0.028 9.7E-07 64.5 9.6 69 415-506 238-306 (806)
398 1qvr_A CLPB protein; coiled co 95.6 0.04 1.4E-06 63.6 10.9 97 416-524 589-685 (854)
399 2dy1_A Elongation factor G; tr 95.6 0.0074 2.5E-07 67.9 4.7 29 411-441 7-35 (665)
400 3tlx_A Adenylate kinase 2; str 95.6 0.0077 2.6E-07 58.8 4.2 26 414-439 28-53 (243)
401 1m2o_B GTP-binding protein SAR 95.6 0.0069 2.3E-07 56.1 3.6 32 403-437 14-45 (190)
402 1q3t_A Cytidylate kinase; nucl 95.6 0.0085 2.9E-07 57.9 4.3 25 415-439 16-40 (236)
403 3pfi_A Holliday junction ATP-d 95.6 0.028 9.7E-07 56.7 8.4 33 417-452 57-89 (338)
404 1zuh_A Shikimate kinase; alpha 95.5 0.0082 2.8E-07 54.5 3.7 26 415-440 7-32 (168)
405 2ged_A SR-beta, signal recogni 95.5 0.014 4.9E-07 53.4 5.4 24 415-438 48-71 (193)
406 2qen_A Walker-type ATPase; unk 95.4 0.053 1.8E-06 54.2 9.8 31 417-452 33-63 (350)
407 4b4t_H 26S protease regulatory 95.4 0.068 2.3E-06 57.6 11.0 70 415-507 243-312 (467)
408 2chq_A Replication factor C sm 95.4 0.005 1.7E-07 61.1 2.1 26 417-442 40-65 (319)
409 2pt5_A Shikimate kinase, SK; a 95.4 0.0095 3.3E-07 53.7 3.8 23 417-439 2-24 (168)
410 3fb4_A Adenylate kinase; psych 95.4 0.0094 3.2E-07 56.3 3.9 23 417-439 2-24 (216)
411 3be4_A Adenylate kinase; malar 95.4 0.0086 2.9E-07 57.1 3.5 24 416-439 6-29 (217)
412 3ake_A Cytidylate kinase; CMP 95.3 0.01 3.5E-07 55.3 3.9 32 417-453 4-35 (208)
413 1z6t_A APAF-1, apoptotic prote 95.3 0.066 2.2E-06 58.3 10.9 93 413-506 145-245 (591)
414 4b3f_X DNA-binding protein smu 95.3 0.027 9.3E-07 62.8 8.0 55 417-474 207-261 (646)
415 1c9k_A COBU, adenosylcobinamid 95.3 0.011 3.7E-07 55.9 4.0 83 417-508 1-84 (180)
416 3foz_A TRNA delta(2)-isopenten 95.3 0.013 4.3E-07 60.2 4.7 34 415-453 10-43 (316)
417 1qvr_A CLPB protein; coiled co 95.3 0.034 1.2E-06 64.1 8.8 35 417-451 193-234 (854)
418 1r6b_X CLPA protein; AAA+, N-t 95.3 0.19 6.7E-06 56.7 14.9 92 417-524 490-582 (758)
419 2gj8_A MNME, tRNA modification 95.3 0.0094 3.2E-07 54.3 3.3 23 416-438 5-27 (172)
420 1hqc_A RUVB; extended AAA-ATPa 95.2 0.05 1.7E-06 54.3 8.8 35 416-453 39-73 (324)
421 3pxg_A Negative regulator of g 95.2 0.018 6.1E-07 61.9 5.9 25 417-441 203-227 (468)
422 1x6v_B Bifunctional 3'-phospho 95.2 0.011 3.8E-07 66.0 4.3 42 414-455 51-92 (630)
423 1ak2_A Adenylate kinase isoenz 95.2 0.011 3.9E-07 56.9 3.8 26 415-440 16-41 (233)
424 3dl0_A Adenylate kinase; phosp 95.2 0.01 3.4E-07 56.1 3.4 23 417-439 2-24 (216)
425 2c9o_A RUVB-like 1; hexameric 95.2 0.016 5.4E-07 61.9 5.3 26 416-441 64-89 (456)
426 3hws_A ATP-dependent CLP prote 95.2 0.052 1.8E-06 55.7 9.0 33 416-451 52-84 (363)
427 2xb4_A Adenylate kinase; ATP-b 95.1 0.012 4.2E-07 56.4 3.8 23 417-439 2-24 (223)
428 1ex7_A Guanylate kinase; subst 95.1 0.0087 3E-07 56.7 2.6 23 417-439 3-25 (186)
429 3exa_A TRNA delta(2)-isopenten 95.1 0.015 5.2E-07 59.7 4.5 34 415-453 3-36 (322)
430 2zej_A Dardarin, leucine-rich 95.0 0.0079 2.7E-07 55.2 2.1 22 416-437 3-24 (184)
431 1f6b_A SAR1; gtpases, N-termin 95.0 0.008 2.7E-07 56.1 2.1 33 402-437 15-47 (198)
432 2gks_A Bifunctional SAT/APS ki 95.0 0.013 4.4E-07 64.5 3.9 40 415-454 372-411 (546)
433 1e4v_A Adenylate kinase; trans 95.0 0.015 5E-07 55.2 3.8 23 417-439 2-24 (214)
434 2fz4_A DNA repair protein RAD2 95.0 0.23 8E-06 48.0 12.5 88 417-512 110-207 (237)
435 4b93_A Vesicle-associated memb 95.0 0.32 1.1E-05 46.0 13.0 105 5-121 6-115 (189)
436 2a5y_B CED-4; apoptosis; HET: 94.9 0.1 3.5E-06 56.8 10.9 93 414-507 151-253 (549)
437 3a8t_A Adenylate isopentenyltr 94.9 0.023 7.8E-07 58.9 5.1 34 415-453 40-73 (339)
438 3auy_A DNA double-strand break 94.8 0.015 5E-07 60.5 3.7 23 416-438 26-48 (371)
439 1g41_A Heat shock protein HSLU 94.8 0.053 1.8E-06 58.1 7.9 25 416-440 51-75 (444)
440 2dyk_A GTP-binding protein; GT 94.8 0.02 6.7E-07 50.4 3.8 22 416-437 2-23 (161)
441 4i1u_A Dephospho-COA kinase; s 94.8 0.071 2.4E-06 51.5 8.0 34 414-453 8-41 (210)
442 2ce2_X GTPase HRAS; signaling 94.7 0.019 6.4E-07 50.4 3.6 23 416-438 4-26 (166)
443 1m8p_A Sulfate adenylyltransfe 94.7 0.015 5.2E-07 64.3 3.6 40 415-454 396-436 (573)
444 2fn4_A P23, RAS-related protei 94.7 0.022 7.4E-07 51.1 4.0 25 414-438 8-32 (181)
445 3lxx_A GTPase IMAP family memb 94.7 0.016 5.4E-07 55.9 3.2 26 414-439 28-53 (239)
446 2bjv_A PSP operon transcriptio 94.7 0.022 7.4E-07 55.7 4.2 39 417-455 31-69 (265)
447 1ypw_A Transitional endoplasmi 94.6 0.0089 3.1E-07 68.7 1.5 24 417-440 513-536 (806)
448 1ega_A Protein (GTP-binding pr 94.6 0.012 4.1E-07 59.4 2.3 23 416-438 9-31 (301)
449 1kao_A RAP2A; GTP-binding prot 94.6 0.021 7.1E-07 50.2 3.6 22 416-437 4-25 (167)
450 1bif_A 6-phosphofructo-2-kinas 94.6 0.02 6.7E-07 61.5 4.1 37 414-450 38-74 (469)
451 1z2a_A RAS-related protein RAB 94.6 0.021 7.2E-07 50.5 3.6 24 415-438 5-28 (168)
452 3vkw_A Replicase large subunit 94.6 0.043 1.5E-06 58.9 6.6 22 416-437 162-183 (446)
453 1u8z_A RAS-related protein RAL 94.6 0.022 7.6E-07 50.1 3.6 22 416-437 5-26 (168)
454 2h92_A Cytidylate kinase; ross 94.5 0.017 5.7E-07 54.6 2.9 25 415-439 3-27 (219)
455 1e9r_A Conjugal transfer prote 94.5 0.049 1.7E-06 57.4 6.8 36 416-451 54-89 (437)
456 4ad8_A DNA repair protein RECN 94.5 0.0089 3.1E-07 65.0 1.1 34 402-438 50-83 (517)
457 4dcu_A GTP-binding protein ENG 94.4 0.018 6.1E-07 61.5 3.2 22 416-437 24-45 (456)
458 4hlc_A DTMP kinase, thymidylat 94.4 0.039 1.3E-06 52.7 5.3 34 416-450 3-36 (205)
459 1svi_A GTP-binding protein YSX 94.4 0.022 7.5E-07 52.1 3.4 24 414-437 22-45 (195)
460 2nut_C Vesicle-trafficking pro 94.4 0.37 1.3E-05 45.6 12.1 95 1-102 2-103 (196)
461 1h65_A Chloroplast outer envel 94.4 0.037 1.3E-06 54.5 5.2 49 374-437 13-61 (270)
462 3eph_A TRNA isopentenyltransfe 94.4 0.035 1.2E-06 58.8 5.3 25 416-440 3-27 (409)
463 1g16_A RAS-related protein SEC 94.4 0.025 8.6E-07 50.1 3.6 22 416-437 4-25 (170)
464 2ocp_A DGK, deoxyguanosine kin 94.4 0.023 7.9E-07 54.9 3.6 26 415-440 2-27 (241)
465 3k53_A Ferrous iron transport 94.3 0.021 7.1E-07 56.4 3.2 23 416-438 4-26 (271)
466 1nrj_B SR-beta, signal recogni 94.3 0.026 9E-07 52.9 3.8 26 414-439 11-36 (218)
467 1ky3_A GTP-binding protein YPT 94.3 0.026 9E-07 50.6 3.6 24 415-438 8-31 (182)
468 1r2q_A RAS-related protein RAB 94.3 0.027 9.4E-07 49.7 3.6 23 415-437 6-28 (170)
469 1z08_A RAS-related protein RAB 94.3 0.027 9.2E-07 50.0 3.6 24 415-438 6-29 (170)
470 3pxi_A Negative regulator of g 94.3 0.02 6.7E-07 65.1 3.3 25 417-441 203-227 (758)
471 1c1y_A RAS-related protein RAP 94.3 0.028 9.4E-07 49.7 3.6 22 416-437 4-25 (167)
472 1ek0_A Protein (GTP-binding pr 94.3 0.028 9.5E-07 49.7 3.6 23 416-438 4-26 (170)
473 1z0j_A RAB-22, RAS-related pro 94.3 0.027 9.4E-07 49.8 3.6 23 416-438 7-29 (170)
474 2jlq_A Serine protease subunit 94.3 0.23 7.7E-06 52.8 11.4 88 417-509 21-122 (451)
475 3clv_A RAB5 protein, putative; 94.3 0.035 1.2E-06 50.4 4.4 24 415-438 7-30 (208)
476 2nzj_A GTP-binding protein REM 94.2 0.027 9.2E-07 50.2 3.4 23 415-437 4-26 (175)
477 3sfz_A APAF-1, apoptotic pepti 94.2 0.093 3.2E-06 61.6 8.9 93 414-507 146-246 (1249)
478 2erx_A GTP-binding protein DI- 94.2 0.024 8.3E-07 50.2 3.1 22 416-437 4-25 (172)
479 3con_A GTPase NRAS; structural 94.2 0.029 9.8E-07 51.2 3.6 24 415-438 21-44 (190)
480 2lkc_A Translation initiation 94.2 0.023 7.9E-07 51.0 2.9 23 415-437 8-30 (178)
481 1upt_A ARL1, ADP-ribosylation 94.2 0.032 1.1E-06 49.5 3.9 23 415-437 7-29 (171)
482 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.029 1E-06 50.2 3.6 23 415-437 7-29 (177)
483 3co5_A Putative two-component 94.2 0.044 1.5E-06 48.8 4.7 23 417-439 29-51 (143)
484 2z83_A Helicase/nucleoside tri 94.1 0.17 5.7E-06 54.0 10.0 44 411-458 19-63 (459)
485 4dsu_A GTPase KRAS, isoform 2B 94.1 0.03 1E-06 50.6 3.6 24 415-438 4-27 (189)
486 3tmk_A Thymidylate kinase; pho 94.0 0.092 3.1E-06 50.7 7.0 28 412-441 4-31 (216)
487 3bc1_A RAS-related protein RAB 94.0 0.033 1.1E-06 50.4 3.6 23 415-437 11-33 (195)
488 3pqc_A Probable GTP-binding pr 94.0 0.031 1.1E-06 50.8 3.4 23 416-438 24-46 (195)
489 2a9k_A RAS-related protein RAL 94.0 0.034 1.2E-06 50.0 3.6 23 415-437 18-40 (187)
490 2ck3_D ATP synthase subunit be 94.0 0.36 1.2E-05 52.1 12.1 55 409-465 149-204 (482)
491 2r2a_A Uncharacterized protein 93.9 0.039 1.3E-06 52.7 4.1 38 415-452 5-48 (199)
492 2y8e_A RAB-protein 6, GH09086P 93.9 0.034 1.2E-06 49.6 3.6 22 416-437 15-36 (179)
493 1wp9_A ATP-dependent RNA helic 93.9 0.91 3.1E-05 46.5 14.9 33 418-450 26-59 (494)
494 2oil_A CATX-8, RAS-related pro 93.9 0.034 1.2E-06 50.9 3.6 23 415-437 25-47 (193)
495 3tw8_B RAS-related protein RAB 93.9 0.031 1.1E-06 50.0 3.2 23 415-437 9-31 (181)
496 1fzq_A ADP-ribosylation factor 93.9 0.033 1.1E-06 50.9 3.5 23 415-437 16-38 (181)
497 1z0f_A RAB14, member RAS oncog 93.9 0.036 1.2E-06 49.5 3.6 24 415-438 15-38 (179)
498 1r6b_X CLPA protein; AAA+, N-t 93.9 0.13 4.6E-06 58.1 9.1 25 417-441 209-233 (758)
499 1moz_A ARL1, ADP-ribosylation 93.9 0.026 8.9E-07 51.0 2.6 23 414-436 17-39 (183)
500 2hxs_A RAB-26, RAS-related pro 93.8 0.037 1.3E-06 49.6 3.6 23 415-437 6-28 (178)
No 1
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=100.00 E-value=1.1e-43 Score=337.23 Aligned_cols=138 Identities=35% Similarity=0.559 Sum_probs=103.6
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhhhhcccCCCceeeccCCCceeeEEEEecccceEEEEEeccccc
Q 008816 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (552)
Q Consensus 1 MlD~~~IftkgGiVLWs~~~~~~~~~~~~in~lI~~vlleer~~~~~~~~~~~~~~y~lkw~~~ne~~Lvfv~vyq~il~ 80 (552)
|.|+|+|||||||||||++ +.++++++|||+||++||||||+++++|.+ |+|+|||+|+||||||||||||+|||
T Consensus 10 ~~D~~~IfTkGGvVLWs~~-~~~~~~~~~IN~LIr~VlLEER~~~~~y~~----d~ytlkW~l~NEl~LVFVvVYQ~iL~ 84 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQ-GVSDSCTGPVNALIRSVLLQERGGNNSFTH----EALTLKYKLDNQFELVFVVGFQKILT 84 (185)
T ss_dssp SCSEEEEEETTSBEEEEEB-TTTBSCCCHHHHHHHHTGGGC-------CC----CCCEEEEEEETTTTEEEEEEESCGGG
T ss_pred ceeEEEEEeCCeEEEEeec-CCcccccchHHHHHHHhhhccccCCCceeE----cCeEEEEEEeccCCEEEEEEEccccc
Confidence 8999999999999999753 445689999999999999999999999999 99999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcCC---------CCcchHHHHHHHHHHHHHHHHHHhhhhcccccccccccccC
Q 008816 81 LLYVDDLLAMMKQSFSEIYDPKRT---------DYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGG 145 (552)
Q Consensus 81 l~yvd~ll~~v~~~F~~~y~~~~~---------~~~~f~~~f~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 145 (552)
|+|||+||++|++.|+++|++.+. .+.+||++|+++|+++|+.++..+ +..|++|+++.++++
T Consensus 85 L~YiD~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~--~k~mr~fees~ks~k 156 (185)
T 2fh5_A 85 LTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRA--PTTMKKFEDSEKAKK 156 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC--------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhh--HHhhccHhhhhhhhh
Confidence 999999999999999999976521 345899999999999998875433 345899998887543
No 2
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.96 E-value=5.1e-27 Score=252.16 Aligned_cols=215 Identities=23% Similarity=0.325 Sum_probs=187.7
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~ 392 (552)
++..+++.|+++.|...|+++++++++++|+++|+++||+.+++..|++.+++.+.+..+.........+..++.++|.+
T Consensus 6 l~~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~ 85 (443)
T 3dm5_A 6 LGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTK 85 (443)
T ss_dssp HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999988877654444567788899999999
Q ss_pred HhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCc
Q 008816 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (552)
Q Consensus 393 il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~ 472 (552)
+|.+... . +. ..++|++|+|+|++||||||++.+||.++...|.+|+++++|+||+++++||+.|++..+++
T Consensus 86 ~L~~~~~-~----~~---~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvp 157 (443)
T 3dm5_A 86 FLGTEAK-P----IE---IKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIE 157 (443)
T ss_dssp HTTSSCC-C----CC---CCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCE
T ss_pred HhcCccc-c----cc---cCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCc
Confidence 9986321 1 11 12357899999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 473 ~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
++......+|..+++.++..+...++|+|||||||+++.+..+|.+|.++.....+...+.++
T Consensus 158 v~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVv 220 (443)
T 3dm5_A 158 VFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVI 220 (443)
T ss_dssp EECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEE
Confidence 998777889999999999999888999999999999999999999999987766554444444
No 3
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.95 E-value=3.1e-26 Score=234.78 Aligned_cols=216 Identities=22% Similarity=0.342 Sum_probs=184.6
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~ 392 (552)
++..|++.|+++.|.+.++++++++.+++++++|+++||+.+++++|++.+++.+.|.++.........+...+.+.|.+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (297)
T 1j8m_F 3 LLDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSN 82 (297)
T ss_dssp CHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999988877644344556777888999999
Q ss_pred HhCCCCccccccc-ccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCC
Q 008816 393 ILTPRRSIDILRD-VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 471 (552)
Q Consensus 393 il~~~~~~diL~d-i~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v 471 (552)
++++.. .+ +++... +.+|+|+|++|+||||++.+||+++.+.|++|+++++|++|+++.+|++.++++.++
T Consensus 83 ~~~~~~-----~~~i~~~~~---~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v 154 (297)
T 1j8m_F 83 LFGGDK-----EPKVIPDKI---PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGV 154 (297)
T ss_dssp HTTCSC-----CCCCSCSSS---SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTC
T ss_pred Hhcccc-----ccccccCCC---CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCe
Confidence 997542 23 555432 569999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC--ChHHHHHHHHHHhhhhccccEEEEEE
Q 008816 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ--VIIEYYLFLLHIYLHTVCEHFVNIIT 536 (552)
Q Consensus 472 ~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~--~~~~lm~eL~kl~~~~~~~~~~~ii~ 536 (552)
+++......+|..+++.++..+...+||+|||||||+++ .+..+|.+|.++.....+...+.++.
T Consensus 155 ~v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvd 221 (297)
T 1j8m_F 155 PVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVID 221 (297)
T ss_dssp CEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 998766667899988888888766899999999999999 88889999988866555555555553
No 4
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.95 E-value=1.6e-26 Score=247.93 Aligned_cols=213 Identities=20% Similarity=0.334 Sum_probs=184.0
Q ss_pred HHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhC
Q 008816 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (552)
Q Consensus 316 ~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~ 395 (552)
.+++.|+++.|.+.|+++++++++++|+.+|+++||+.+++..|++++++.+.+..+.........+..++.++|.++|+
T Consensus 5 ~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~ 84 (433)
T 3kl4_A 5 NIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFG 84 (433)
T ss_dssp THHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcC
Confidence 46678889999999999999999999999999999999999999999999988877654444567778899999999998
Q ss_pred CCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceee
Q 008816 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE 475 (552)
Q Consensus 396 ~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~ 475 (552)
+..... + ...+.|.+|+|+|++||||||++++||.++.+.|++|+++++|+||+++++||..+++..+++++.
T Consensus 85 ~~~~~~----~---~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~ 157 (433)
T 3kl4_A 85 GDKEPN----V---NPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG 157 (433)
T ss_dssp SSSCCC----C---SCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC
T ss_pred cccccc----c---cccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceee
Confidence 643211 1 112357799999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC--ChHHHHHHHHHHhhhhccccEEEEE
Q 008816 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ--VIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 476 ~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~--~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
.....+|..+++.+++.+...++|+|||||||+++ .+..+|.++..+.........+.++
T Consensus 158 ~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVl 219 (433)
T 3kl4_A 158 EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVI 219 (433)
T ss_dssp CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEE
Confidence 77778999999999998877899999999999999 9999999999987766554444444
No 5
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.95 E-value=1.1e-26 Score=241.40 Aligned_cols=208 Identities=39% Similarity=0.572 Sum_probs=178.4
Q ss_pred ccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccc
Q 008816 325 AGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILR 404 (552)
Q Consensus 325 ~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~ 404 (552)
.+...++++++++++++|+++|+++||+.+++.+|++.|++.+.++++..+..+.+.+..++.+.|.++|.+...+++..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 121 (328)
T 3e70_C 42 ILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIE 121 (328)
T ss_dssp CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHHSCCSSCCCHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 45778999999999999999999999999999999999999999988877777788899999999999998765443311
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHH
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI 484 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~ 484 (552)
+.....+|.+++|+|||||||||++++||+++.+.+|+|.+.++|+||.++.+|++.|+++++++++.+.+..+|..
T Consensus 122 ---~~~~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~ 198 (328)
T 3e70_C 122 ---EIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA 198 (328)
T ss_dssp ---HHHSSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH
T ss_pred ---hcccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHH
Confidence 11123345699999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 485 VAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 485 iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
.+++++..+...++|++++||+|+.+....+|++|..+.........+.+.
T Consensus 199 ~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvL 249 (328)
T 3e70_C 199 VAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVG 249 (328)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999988888999999999999999999999999887655444333333
No 6
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.95 E-value=4.8e-26 Score=243.91 Aligned_cols=214 Identities=24% Similarity=0.324 Sum_probs=186.4
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~ 392 (552)
.+..|++.++++.|.+.|+++++++.+++++.+|+++||+.+++..|++.|++.+.|..+.........+..++.+.|..
T Consensus 5 l~~~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~ 84 (425)
T 2ffh_A 5 LSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKE 84 (425)
T ss_dssp HHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999988755555667788899999999
Q ss_pred HhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCc
Q 008816 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (552)
Q Consensus 393 il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~ 472 (552)
++++.. .++++. .+.+|+|+|++|+||||++.+||+++.+.+++|+++++|++|+++++||+.+++..+++
T Consensus 85 ~~~~~~-----~~i~l~----~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 85 ALGGEA-----RLPVLK----DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp HTTSSC-----CCCCCC----SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred HhCCCc-----ccccCC----CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCcc
Confidence 997542 345664 45599999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 473 ~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
++..+...+|..+++.++..+...+||+|||||||+++.+..+|.+|..+.....+...+.++
T Consensus 156 v~~~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVv 218 (425)
T 2ffh_A 156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVL 218 (425)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred EEecCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEE
Confidence 998776788999888888887678999999999999999999999998887655554444444
No 7
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.94 E-value=1.2e-25 Score=241.50 Aligned_cols=216 Identities=22% Similarity=0.347 Sum_probs=184.8
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~ 392 (552)
.+..|++.++++.|.+.|+++++++.+++++.+|+++||+.+++..|++.|++.+.|..+.........+..++.++|++
T Consensus 5 l~~~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (433)
T 2xxa_A 5 LTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVA 84 (433)
T ss_dssp HHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999987755444556677888999999
Q ss_pred HhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-CceEEEeeecCCcchHHHHHHHHHHHcCC
Q 008816 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQV 471 (552)
Q Consensus 393 il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-ggkVll~~~D~~r~ga~eqL~~~~~~l~v 471 (552)
++++... .+. ...+.|++|+|+|++||||||++.+||.++... |.+|+++++|+||+++++|+..++...++
T Consensus 85 ~l~~~~~-----~~~--~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l 157 (433)
T 2xxa_A 85 AMGEENQ-----TLN--LAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGV 157 (433)
T ss_dssp HHCSSSC-----CCC--CCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTC
T ss_pred Hhccccc-----ccc--ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCe
Confidence 9986421 122 234567899999999999999999999999998 99999999999999999999999999999
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 472 ~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
+++..+...+|..+++.++..+...+||+|||||||+++.+..++.+|..+.....+...+.++
T Consensus 158 ~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVv 221 (433)
T 2xxa_A 158 DFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVV 221 (433)
T ss_dssp EECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEe
Confidence 9988776778999888888887668999999999999998889999998886555544444444
No 8
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.94 E-value=1.3e-25 Score=232.52 Aligned_cols=197 Identities=26% Similarity=0.370 Sum_probs=163.1
Q ss_pred HHHHHHHhcc-CCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhC
Q 008816 317 FSSMFQSIAG-KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (552)
Q Consensus 317 ~~~~~~~~~g-~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~ 395 (552)
|+..++++.+ .+.++++ .+++|+++|+++||+.+++.+|++.|++.+.+.++.. .++.++.+.|.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~l~ 87 (320)
T 1zu4_A 18 FSKDIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFE------NIKDALVESLYQAYT 87 (320)
T ss_dssp HHHHHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHH------HHHHHHHHHHHHHhC
Confidence 4444555544 4678864 6889999999999999999999999999887765532 278899999999998
Q ss_pred CCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHH---HcCCc
Q 008816 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR---RLQVP 472 (552)
Q Consensus 396 ~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~---~l~v~ 472 (552)
+....+++.+++|...+++ +|+|+|+||+||||++++||+++.+.+++|+++++|++|.++.+|+..|++ +.+++
T Consensus 88 ~~~~~~~~~~l~~~~~~~~--vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~ 165 (320)
T 1zu4_A 88 DNDWTNKKYRIDFKENRLN--IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVD 165 (320)
T ss_dssp CSCC----CCCCCCTTSCE--EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEE
T ss_pred cccccccccCccccCCCCe--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCce
Confidence 7654444467787765554 999999999999999999999999999999999999999999999999987 67888
Q ss_pred ee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhh
Q 008816 473 IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLH 525 (552)
Q Consensus 473 ~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~ 525 (552)
++ .+....+|...++.++..++..+||+|||||||+++.+..+|.+|..+..+
T Consensus 166 vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~v 219 (320)
T 1zu4_A 166 LVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKI 219 (320)
T ss_dssp EECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHH
Confidence 87 555677888888888888888999999999999999888999999877543
No 9
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.92 E-value=1.1e-23 Score=216.40 Aligned_cols=190 Identities=28% Similarity=0.382 Sum_probs=161.0
Q ss_pred HhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccc
Q 008816 323 SIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDI 402 (552)
Q Consensus 323 ~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~di 402 (552)
-+.|.+.++ +++.+++++++|+++||+.+++.+|++.+++.+.+..+.. ...+..++.+.|.+++.+...
T Consensus 20 ~~~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~--- 89 (302)
T 3b9q_A 20 LLLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKESVLEMLAKKNS--- 89 (302)
T ss_dssp HHTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCS----HHHHHHHHHHHHHHHHCC--C---
T ss_pred HHcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHHHhCCccc---
Confidence 334566666 6789999999999999999999999999999988876532 456778999999999986432
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCC-CC
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE-KD 481 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~-~d 481 (552)
+..++|.+.+|+ +++|+|||||||||++++||+++.+.+|+|.+.++|+||.++.+|++.|+++.+++++.+... .+
T Consensus 90 ~~~l~~~~~~g~--vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPA--VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCE--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCc--EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 234677777776 999999999999999999999999999999999999999999999999988888998877766 78
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 482 p~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
|...+++++..+...++|++++|++|+.+....+|.+|++...
T Consensus 168 ~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~ 210 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKK 210 (302)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHH
Confidence 8888888888877778899999999999999999999996654
No 10
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.92 E-value=5.3e-24 Score=219.18 Aligned_cols=181 Identities=30% Similarity=0.442 Sum_probs=153.8
Q ss_pred HHHHhc-cCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCC
Q 008816 320 MFQSIA-GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRR 398 (552)
Q Consensus 320 ~~~~~~-g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~ 398 (552)
.++++. |. .+++ +.+++++++|+++||+.+++++|++.+++ .+ . . ++.++.+.|.+++.+..
T Consensus 33 ~~~~~~~~~-~~~~----~~~~~l~~~L~~~dv~~~~~~~~~~~~~~---------~~-~-~-~~~~~~~~l~~~l~~~~ 95 (306)
T 1vma_A 33 RVVKLLKGK-KLDD----ETREELEELLIQADVGVETTEYILERLEE---------KD-G-D-ALESLKEIILEILNFDT 95 (306)
T ss_dssp HHHHHHTTC-CCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHTT---------CC-S-C-HHHHHHHHHHHHTCSCC
T ss_pred HHHHHhcCC-CCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHh---------cC-H-H-HHHHHHHHHHHHhCCCC
Confidence 344443 45 7876 57889999999999999999999999965 11 1 2 67888999999998643
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCC
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 478 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~ 478 (552)
. +++.. +.+.+|+|+|+|||||||++++||+++.+.+++|+++++|+||+++++|+..|+++.+++++....
T Consensus 96 ~------~~~~~--~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s 167 (306)
T 1vma_A 96 K------LNVPP--EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSE 167 (306)
T ss_dssp C------CCCCS--SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCST
T ss_pred C------CcccC--CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCC
Confidence 2 23333 345599999999999999999999999999999999999999999999999999999999887777
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhh
Q 008816 479 EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLH 525 (552)
Q Consensus 479 ~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~ 525 (552)
+.+|..+++.++++++..+||+|||||||+.+....+|++|.++..+
T Consensus 168 ~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~ 214 (306)
T 1vma_A 168 GADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRV 214 (306)
T ss_dssp TCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHH
Confidence 78899888889999889999999999999999999999999887654
No 11
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.92 E-value=2e-23 Score=213.56 Aligned_cols=215 Identities=25% Similarity=0.334 Sum_probs=179.1
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~ 392 (552)
.+..|++.++++.+.+.++++++.+.+++|+..|+.+++..+++..|++++.....|+.+.........+...+.+.|..
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 84 (295)
T 1ls1_A 5 LSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKE 84 (295)
T ss_dssp HHHHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHH
Confidence 44557778889999999999999999999999999999999999999999998877776643223335566677788888
Q ss_pred HhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCc
Q 008816 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (552)
Q Consensus 393 il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~ 472 (552)
.+.+.. +++++. .+ .+++|+|+||+||||++.+||+++.+.+++|+++++|++|+++.+|+..+.+..+++
T Consensus 85 ~~~~~~-----~~i~~~--~~--~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~ 155 (295)
T 1ls1_A 85 ALGGEA-----RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 155 (295)
T ss_dssp HTTSSC-----CCCCCC--SS--EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCC
T ss_pred HHCCCC-----ceeecC--CC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeE
Confidence 886432 456665 44 499999999999999999999999999999999999999999999999998888999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEE
Q 008816 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIIT 536 (552)
Q Consensus 473 ~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~ 536 (552)
++..+...+|..+.+.+++.+...+||+|||||||+++.+..+|.++..+.....+...+.++.
T Consensus 156 ~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 156 VLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9876666789998888998887789999999999999988899999988876655544444443
No 12
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.92 E-value=5.4e-24 Score=230.87 Aligned_cols=183 Identities=31% Similarity=0.417 Sum_probs=159.2
Q ss_pred CcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCccccccccc
Q 008816 328 ANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH 407 (552)
Q Consensus 328 ~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~ 407 (552)
+.|++ +.+++|+++|+++||+.+++.+|++.|+..+.++.+.. ...++.+|.+.|.++|.+. .++++
T Consensus 221 ~~ide----~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~-----~~~Is 287 (503)
T 2yhs_A 221 KKIDD----DLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRD----AEALYGLLKEEMGEILAKV-----DEPLN 287 (503)
T ss_dssp CBCSH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCB----GGGHHHHHHHHHHHHHHTT-----BCCCC
T ss_pred CCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHhCCC-----CCCce
Confidence 45654 57889999999999999999999999999887755433 2456678888999999753 24678
Q ss_pred ccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHH
Q 008816 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (552)
Q Consensus 408 ~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar 487 (552)
|.+..|. +|+|+|+||||||||+++|++++.+.+|+|+|.++|+||.++.+||+.|+.+.+++++.+....++...++
T Consensus 288 l~i~~Ge--VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~ 365 (503)
T 2yhs_A 288 VEGKAPF--VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIF 365 (503)
T ss_dssp CCSCTTE--EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHH
T ss_pred eeccCCe--EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHH
Confidence 8877776 99999999999999999999999999999999999999999999999998888899888777778888889
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhh
Q 008816 488 EAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLH 525 (552)
Q Consensus 488 ~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~ 525 (552)
.+|..++..++|+|||||+|+++.+..+|.+|++++.+
T Consensus 366 e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~i 403 (503)
T 2yhs_A 366 DAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRV 403 (503)
T ss_dssp HHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHH
Confidence 99999888999999999999999999999999988654
No 13
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.92 E-value=3.6e-23 Score=217.26 Aligned_cols=182 Identities=29% Similarity=0.423 Sum_probs=159.2
Q ss_pred chHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccccccccCC
Q 008816 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR 413 (552)
Q Consensus 334 ~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g 413 (552)
++++.+++++++|+++||+.+++.+|++.|++.+.+..+.. ...+..++.+.|.+++.+... ...++|.+.+|
T Consensus 85 ~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~---~~~l~l~~~~g 157 (359)
T 2og2_A 85 ETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKESVLEMLAKKNS---KTELQLGFRKP 157 (359)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCS----HHHHHHHHHHHHHHHHCCC------CSCCCCSSSS
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHHHhCCccc---CCCcceecCCC
Confidence 47899999999999999999999999999999988876632 467788999999999986532 12466766666
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCC-CCHHHHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE-KDPAIVAKEAIQE 492 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~-~dp~~iar~aIa~ 492 (552)
+ +|+|+|||||||||++++||+++.+.+|+|.+.++|+||.++++|++.|+.+.+++++.+... .+|...+++++..
T Consensus 158 ~--vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 158 A--VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp E--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred e--EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 6 999999999999999999999999999999999999999999999999988888999887777 7898888899988
Q ss_pred HHhCCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 493 ATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 493 a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
+...++|++++||+|+.+....+|.+|++...
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~ 267 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKK 267 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHhcCCChhhhhHHHHHHHHHH
Confidence 77778899999999999999999999997654
No 14
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.92 E-value=7.5e-24 Score=231.34 Aligned_cols=215 Identities=24% Similarity=0.415 Sum_probs=177.7
Q ss_pred hhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHH
Q 008816 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (552)
Q Consensus 314 ~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~i 393 (552)
+..|++.|+++.|.+.|+++++++++++++.+|+++||+.+++..|++.|++.+.+..+.........+..++.++|+++
T Consensus 7 ~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~l 86 (504)
T 2j37_W 7 GRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKL 86 (504)
T ss_dssp -CTTTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHH
Confidence 33455567788888899999999999999999999999999999999999998888776544445567778999999999
Q ss_pred hCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCce
Q 008816 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 473 (552)
Q Consensus 394 l~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~ 473 (552)
+.+... .+.+..++|++|+|+|++||||||++.+||.++...|.+|+++++|+||+++++||..++.+.++++
T Consensus 87 l~~~~~-------~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v 159 (504)
T 2j37_W 87 VDPGVK-------AWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 (504)
T ss_dssp HCCCCC-------CCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE
T ss_pred hccccc-------hhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE
Confidence 986432 1122335678999999999999999999999999889999999999999999999999999999998
Q ss_pred eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 474 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 474 ~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
+......+|..+++.++..+...++|++||||||+.+.+..++.++..+.....+...+.++
T Consensus 160 ~~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVv 221 (504)
T 2j37_W 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVM 221 (504)
T ss_dssp EECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred EccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEE
Confidence 87666789999988888887668999999999999998888898888776543333333444
No 15
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.91 E-value=1e-23 Score=226.60 Aligned_cols=213 Identities=23% Similarity=0.356 Sum_probs=176.0
Q ss_pred hhhHHHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCC-CccchhHHHHHHHHHHHH
Q 008816 313 KTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLA-SFTRISSIVQAAMEEALV 391 (552)
Q Consensus 313 ~~~~~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~-~f~~~~~~v~~~l~~~L~ 391 (552)
++..|++.|+++.|.+.|+++++++.+++++.+|++++|+..++.++++.+++...+.++. +++ ....+...+.+.|.
T Consensus 4 l~~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 82 (432)
T 2v3c_C 4 LGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLS-KKEHIIKIVYEELV 82 (432)
T ss_dssp HHHHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCC-hHHHHHHHHHHHHH
Confidence 5667888999999999999999999999999999999999999999999999988776543 444 34557788899999
Q ss_pred HHhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCC
Q 008816 392 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 471 (552)
Q Consensus 392 ~il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v 471 (552)
+++++... .+.+..+.|++|+|+|++||||||++.+||+++...|.+|+++++|+||+++++||+.++...++
T Consensus 83 ~ll~~~~~-------~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv 155 (432)
T 2v3c_C 83 KLLGEEAK-------KLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHV 155 (432)
T ss_dssp HHHCCSCC-------CCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSC
T ss_pred HHhCCCCc-------CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCc
Confidence 99986422 12234456779999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 472 PIFEKG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 472 ~~~~~~-~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
+++... ...+|..+++.++..+ .++|+|||||||+.+.+..++.+|..+.....+...+.++
T Consensus 156 ~v~~~~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVv 218 (432)
T 2v3c_C 156 PIYGDETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVI 218 (432)
T ss_dssp CEECCSSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEE
T ss_pred ceEecCCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEe
Confidence 998765 5567666666677664 8899999999999998889999998766544444433343
No 16
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.91 E-value=1.1e-23 Score=216.61 Aligned_cols=197 Identities=29% Similarity=0.393 Sum_probs=149.9
Q ss_pred HHHHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCC
Q 008816 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP 396 (552)
Q Consensus 317 ~~~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~ 396 (552)
+++.++++.+...+++ ++++.+++++++|+++||+.+++.+|++.+++.+. ..+..++.+.|.+++.+
T Consensus 11 l~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~l~~ 78 (304)
T 1rj9_A 11 LAKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKEKLVGMLEP 78 (304)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHHHHTTTTCT
T ss_pred HHHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCc
Confidence 4445555666555777 78999999999999999999999999999987543 23456778899999986
Q ss_pred CCcccccccccccc-----cCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCC
Q 008816 397 RRSIDILRDVHAAK-----EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 471 (552)
Q Consensus 397 ~~~~diL~di~~~~-----~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v 471 (552)
....+....+++.- ..+++.+|+|+|||||||||++++||+++.+.+|+|.+.++|++|.++.+|+..|+++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i 158 (304)
T 1rj9_A 79 DERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSI 158 (304)
T ss_dssp TCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTC
T ss_pred ccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCc
Confidence 53210000111110 1223459999999999999999999999999999999999999999999999999888889
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhh
Q 008816 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLH 525 (552)
Q Consensus 472 ~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~ 525 (552)
+++.+....+|...+++++..+...++|++++||+|+.+....+|.+|++....
T Consensus 159 ~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~ 212 (304)
T 1rj9_A 159 PVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRA 212 (304)
T ss_dssp CEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHH
Confidence 988888888998888888888777889999999999999999999999876643
No 17
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.85 E-value=1.9e-20 Score=191.73 Aligned_cols=174 Identities=27% Similarity=0.276 Sum_probs=136.7
Q ss_pred ChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCccccccccccc
Q 008816 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESV-AASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAA 409 (552)
Q Consensus 331 ~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v-~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~ 409 (552)
...++++.+++++++|+++||+.+++.+|++.+ +..+.+... + ...+..++.+.|.+++.+... +.+.
T Consensus 34 ~~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~l~~~l~~~~~------~~~~ 102 (296)
T 2px0_A 34 YQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGL---T--EENVVGKLQEILCDMLPSADK------WQEP 102 (296)
T ss_dssp -----CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSSCC---C--TTTHHHHHHHHHHTTSCCGGG------SCCC
T ss_pred cccccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhcccCC---C--HHHHHHHHHHHHHHHhCCccc------cccc
Confidence 344667889999999999999999999999999 555554422 2 245677888999999976432 1121
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 488 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~ 488 (552)
.+|+ +|+|+|+|||||||++++||+++.+ .|.+|+++++|+||.++.+||..+++..+++++.. .++..+ +.
T Consensus 103 -~~g~--vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~~l-~~ 175 (296)
T 2px0_A 103 -IHSK--YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKEEF-QQ 175 (296)
T ss_dssp -CCSS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHHHH-HH
T ss_pred -CCCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHHHH-HH
Confidence 2344 9999999999999999999999986 67799999999999999999999999988887542 245443 45
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 489 AIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 489 aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
+++. ..+||+|||||||+.+.+..+|.+|.++..
T Consensus 176 al~~--~~~~dlvIiDT~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 176 AKEL--FSEYDHVFVDTAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp HHHH--GGGSSEEEEECCCCCTTSHHHHHHHHHHSC
T ss_pred HHHH--hcCCCEEEEeCCCCChhhHHHHHHHHHHHh
Confidence 6664 488999999999999999999999988754
No 18
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.46 E-value=2.3e-13 Score=134.49 Aligned_cols=118 Identities=19% Similarity=0.137 Sum_probs=84.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------- 457 (552)
..+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|+|.+.+.|+....
T Consensus 18 ~~~L~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGE--FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 358999999999999 99999999999999999999999999999998776542111
Q ss_pred ----HHHHH---------------------HHHHHHcCCcee---ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 458 ----AVEQL---------------------RTHARRLQVPIF---EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 458 ----a~eqL---------------------~~~~~~l~v~~~---~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
..+.+ ..+.+.+++.-. ......+..+..|.+|++|+..+|+++|+|||+..
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~ 175 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWA 175 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 11111 112222333211 11223445566689999999999999999999977
Q ss_pred CChHHHHHHH
Q 008816 510 QVIIEYYLFL 519 (552)
Q Consensus 510 ~~~~~lm~eL 519 (552)
.+.......+
T Consensus 176 LD~~~~~~i~ 185 (235)
T 3tif_A 176 LDSKTGEKIM 185 (235)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7665443333
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.45 E-value=2e-13 Score=137.58 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=83.8
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--------------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga--------------------- 458 (552)
..+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|.|.+.+.|+.....
T Consensus 24 ~~vL~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (266)
T 4g1u_C 24 QALINDVSLHIASGE--MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFS 101 (266)
T ss_dssp EEEEEEEEEEEETTC--EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCB
T ss_pred eeEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCC
Confidence 458999999999999 999999999999999999999999999999998776532111
Q ss_pred -H----------------HHHHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhC------CCCEEEEeCCCCCCChH
Q 008816 459 -V----------------EQLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRN------GSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 -~----------------eqL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~------~~DvVIIDtpGr~~~~~ 513 (552)
. +......+.+++.-+. .....+..+..|.+|++|+.. +|+++|+|||+...+..
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 102 VSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp HHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 1 1112222333332111 112344555668999999998 99999999999777665
Q ss_pred HHH
Q 008816 514 EYY 516 (552)
Q Consensus 514 ~lm 516 (552)
...
T Consensus 182 ~~~ 184 (266)
T 4g1u_C 182 HQQ 184 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 20
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.45 E-value=2e-13 Score=143.20 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=84.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC----------c-c------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------R-S------------ 456 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~----------r-~------------ 456 (552)
..+|++++|.+.+|+ +++|+||||||||||+++|++++.+..|+|.+.+.|++ | .
T Consensus 17 ~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ 94 (359)
T 3fvq_A 17 TPVLNDISLSLDPGE--ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94 (359)
T ss_dssp EEEEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTT
T ss_pred EEEEEeeEEEEcCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCC
Confidence 458999999999999 99999999999999999999999999999998776541 0 0
Q ss_pred -hH------------------HHHHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 457 -GA------------------VEQLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 457 -ga------------------~eqL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.. .+....+.+.+++.-+.. ....+..+..|.+|++|+..+|+++|+|||....+...
T Consensus 95 ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~ 173 (359)
T 3fvq_A 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL 173 (359)
T ss_dssp SCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 01 112223334445442211 22345566678999999999999999999997766543
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.45 E-value=2.3e-13 Score=143.05 Aligned_cols=119 Identities=17% Similarity=0.090 Sum_probs=86.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--------------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga--------------------- 458 (552)
..+|++|+|.+++|+ +++|+||||||||||+++|++++.+..|+|.+.+.|+.....
T Consensus 41 ~~aL~~vsl~i~~Ge--i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~ 118 (366)
T 3tui_C 41 IQALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118 (366)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCT
T ss_pred eEEEEeeEEEEcCCC--EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCC
Confidence 468999999999999 999999999999999999999999999999998877542211
Q ss_pred ----HHHH------------------HHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 ----VEQL------------------RTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 ----~eqL------------------~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+.+ ..+.+.+++.-+.. ....+..+..|.+|++|+..+|+++|+|||+...+...
T Consensus 119 ~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~ 198 (366)
T 3tui_C 119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198 (366)
T ss_dssp TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 1111 11122223332111 12344455668999999999999999999998777654
Q ss_pred HHHHHH
Q 008816 515 YYLFLL 520 (552)
Q Consensus 515 lm~eL~ 520 (552)
....+.
T Consensus 199 ~~~i~~ 204 (366)
T 3tui_C 199 TRSILE 204 (366)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
No 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.45 E-value=2.3e-13 Score=137.83 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=81.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|.|.+.+.|+...
T Consensus 22 ~~L~~isl~i~~Ge--~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 22 HALKGINMNIKRGE--VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99 (275)
T ss_dssp EEEEEEEEEEETTS--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS
T ss_pred eEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc
Confidence 48999999999999 9999999999999999999999999999999887765210
Q ss_pred -hHHHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 457 -GAVEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 457 -ga~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
...+.+ ..+.+.+++.-+. .....+..+..|.+|++|+..+|+++|+|||+...+....
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~ 179 (275)
T 3gfo_A 100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179 (275)
T ss_dssp SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 011111 1112222332111 1122344555589999999999999999999987776543
No 23
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.44 E-value=2.5e-13 Score=143.52 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=85.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAV 459 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~ 459 (552)
..+|++++|.+.+|+ +++|+||||||||||+++|++++.+..|+|.+.+.|... ....
T Consensus 16 ~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 16 VVVSKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVA 93 (381)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHH
T ss_pred EEEEeeeEEEECCCC--EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHH
Confidence 458999999999999 999999999999999999999999999999987766421 0111
Q ss_pred H------------------HHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 E------------------QLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 e------------------qL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+ ....+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|||....+...
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~ 168 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence 1 2223344445543221 22345566779999999999999999999997766543
No 24
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.42 E-value=6.5e-13 Score=133.13 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=83.3
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------------------chH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------------------SGA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------------------~ga 458 (552)
..+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|+|.+.+.++.. ...
T Consensus 28 ~~vl~~vsl~i~~Ge--i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 105 (256)
T 1vpl_A 28 KEILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105 (256)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBH
T ss_pred EEEEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcH
Confidence 358999999999999 999999999999999999999999999999887655321 011
Q ss_pred HHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 459 VEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 459 ~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
.+.+ ..+.+.+++.-+. .....+..+..|.+|++|+..+|+++|+|||+...+....
T Consensus 106 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~ 182 (256)
T 1vpl_A 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182 (256)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHH
Confidence 1111 1222333443211 1223455666789999999999999999999977766443
No 25
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.42 E-value=5.5e-13 Score=130.82 Aligned_cols=137 Identities=16% Similarity=0.112 Sum_probs=90.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--------------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga--------------------- 458 (552)
..+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|+|.+.+.++.....
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 17 YEILKGISLSVKKGE--FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94 (224)
T ss_dssp EEEEEEEEEEEETTC--EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC
T ss_pred EeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC
Confidence 358999999999999 999999999999999999999999999999987766432111
Q ss_pred -----HHHH------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 -----VEQL------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 -----~eqL------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+.+ ..+.+.+++.-+. ........+..|.+|++|+..+|+++|+|||+...|..
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (224)
T 2pcj_A 95 PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174 (224)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHH
T ss_pred CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 1111 1111222332111 11123445555899999999999999999999777665
Q ss_pred HHHHHHHHHhhhhccccEEEEEEec
Q 008816 514 EYYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 514 ~lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
.....+..|.........+.++++.
T Consensus 175 ~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 175 NTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4333333333332223444444444
No 26
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.41 E-value=6e-13 Score=139.41 Aligned_cols=112 Identities=18% Similarity=0.136 Sum_probs=83.3
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAV 459 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~ 459 (552)
..+|++++|.+++|+ +++|+||||||||||+++|++++.+..|+|.+.+.++.. ....
T Consensus 28 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 28 ARSVRGVSFQIREGE--MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TTCEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred CEEEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 358999999999999 999999999999999999999999999999987765310 0111
Q ss_pred H------------------HHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 460 E------------------QLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 460 e------------------qL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+ ....+.+.+++.-+.. ....+..+..|.+|++|+..+|+++|+|||....|..
T Consensus 106 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 179 (355)
T 1z47_A 106 DNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179 (355)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1 1222334445532211 2234556677899999999999999999999776654
No 27
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.40 E-value=6.6e-13 Score=139.32 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=83.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAV 459 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~ 459 (552)
..+|++++|.+++|+ +++|+||||||||||+++|++++.+..|+|.+.+.+... ....
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGE--FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVF 93 (359)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHH
T ss_pred EEEEeeeEEEEcCCC--EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 357899999999999 999999999999999999999999999999987765310 0011
Q ss_pred ------------------HHHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 460 ------------------EQLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 460 ------------------eqL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+....+.+.+++.-+.. ....+..+..|.+|++|+..+|+++|+|||....|..
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 167 (359)
T 2yyz_A 94 ENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167 (359)
T ss_dssp HHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 12223344445532211 2234556667899999999999999999999766554
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.39 E-value=1.4e-12 Score=129.26 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=80.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|+|.+.+.++....
T Consensus 20 ~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~lt 97 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELT 97 (240)
T ss_dssp EEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSB
T ss_pred eEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCc
Confidence 58999999999999 99999999999999999999999999999988765542110
Q ss_pred HHHH-----------------HHHHHHHcC-Ccee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 458 AVEQ-----------------LRTHARRLQ-VPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 458 a~eq-----------------L~~~~~~l~-v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+. +..+.+.++ +.-+ .........+..|.+|++|+..+|+++|+|||+...+...
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 174 (240)
T 1ji0_A 98 VYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174 (240)
T ss_dssp HHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 0111 111112221 2110 1122344555668899999999999999999997776644
No 29
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.39 E-value=9.7e-13 Score=132.42 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=81.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC--c----------------------c
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--R----------------------S 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~--r----------------------~ 456 (552)
.+|++++|.+.+|+ +++|+||||||||||++.|++++.+..|+|.+.+.++. . .
T Consensus 38 ~vL~~vsl~i~~Ge--i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 115 (263)
T 2olj_A 38 EVLKGINVHIREGE--VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM 115 (263)
T ss_dssp EEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTS
T ss_pred EEEEeeEEEEcCCC--EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCC
Confidence 58999999999999 99999999999999999999999999999998776542 0 0
Q ss_pred hHHHHHH-------------------HHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 457 GAVEQLR-------------------THARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 457 ga~eqL~-------------------~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
...+.+. .+.+.+++.-+. ........+..|.+|++|+..+|+++|+|||+...|....
T Consensus 116 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~ 195 (263)
T 2olj_A 116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195 (263)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence 0111111 112222332111 1123444555689999999999999999999977766443
No 30
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.39 E-value=3.5e-13 Score=127.14 Aligned_cols=113 Identities=12% Similarity=0.181 Sum_probs=92.0
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhhhhcccCCCceeeccCCCceeeEEEEecccceEEEEEeccccc
Q 008816 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (552)
Q Consensus 1 MlD~~~IftkgGiVLWs~~~~~~~~~~~~in~lI~~vlleer~~~~~~~~~~~~~~y~lkw~~~ne~~Lvfv~vyq~il~ 80 (552)
|++.+++|+|||+|||.++.. ...+..+++.+|+.+.. +.+..+|++ ++|+++|..+| ||+|++|+++.+.
T Consensus 44 M~ilYa~VaRG~~VLae~t~~-~gnf~~iak~ll~kl~~--~~~r~s~~~----~~y~fHyl~~n--gl~yl~I~D~~yp 114 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWC-GGNFLEVTEQILAKIPS--ENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDFE 114 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESS-CBSHHHHHHHHHTTSCS--SCEEEEEEE----TTEEEEEEEET--TEEEEEEEETTSC
T ss_pred CceEEEEEEcCCEEEEEeccC-CCCHHHHHHHHHhhCCC--CCCceEEEE----CCEEEEEEEEC--CEEEEEEEccccc
Confidence 999999999999999986433 34566677777777765 334467999 99999999987 8999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcCC---CCcchHHHHHHHHHHHHHH
Q 008816 81 LLYVDDLLAMMKQSFSEIYDPKRT---DYSDFDEMFRQLRKEAEAR 123 (552)
Q Consensus 81 l~yvd~ll~~v~~~F~~~y~~~~~---~~~~f~~~f~~~l~~~e~~ 123 (552)
..++..||++|+.+|.+.|++... .| .|++.|+..|++.+..
T Consensus 115 ~r~AF~fLedI~~eF~~~y~~~~~~a~py-sf~~eF~~~Lk~~~~~ 159 (169)
T 2vx8_A 115 RSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQLKH 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGTCCTT-TTHHHHHHHHSCC---
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccCCc-chhHHHHHHHHHHHHH
Confidence 999999999999999999976532 34 7989999988776554
No 31
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.39 E-value=7.2e-13 Score=139.20 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=83.6
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc--------------------chHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------------------SGAV 459 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r--------------------~ga~ 459 (552)
..+|++++|.+.+|+ +++|+||||||||||+++|++++.+..|+|.+.+.++.. ....
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 16 FTALNNINLKIKDGE--FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp SEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHH
T ss_pred EEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHH
Confidence 358899999999999 999999999999999999999999999999987765320 0111
Q ss_pred H------------------HHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 E------------------QLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 e------------------qL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+ ....+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|||....|...
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 168 (362)
T 2it1_A 94 KNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL 168 (362)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 1222334445532211 22345566778999999999999999999997666543
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.39 E-value=1.7e-12 Score=129.88 Aligned_cols=113 Identities=18% Similarity=0.119 Sum_probs=79.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHH---------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAV--------------------- 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~--------------------- 459 (552)
.+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|.|.+.+.++......
T Consensus 21 ~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 98 (257)
T 1g6h_A 21 KALDGVSISVNKGD--VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMT 98 (257)
T ss_dssp EEEEEECCEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSB
T ss_pred eeEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCc
Confidence 58999999999999 9999999999999999999999999999999877664221110
Q ss_pred --HH-------------------------------HHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Q 008816 460 --EQ-------------------------------LRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVD 504 (552)
Q Consensus 460 --eq-------------------------------L~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIID 504 (552)
+. ...+.+.+++.-+. ........+..|.+|++|+..+|+++|+|
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD 178 (257)
T 1g6h_A 99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178 (257)
T ss_dssp HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 00 11111122221110 01123334444789999999999999999
Q ss_pred CCCCCCChHHH
Q 008816 505 TAGRMQVIIEY 515 (552)
Q Consensus 505 tpGr~~~~~~l 515 (552)
||+...+....
T Consensus 179 EPts~LD~~~~ 189 (257)
T 1g6h_A 179 EPIAGVAPGLA 189 (257)
T ss_dssp STTTTCCHHHH
T ss_pred CCccCCCHHHH
Confidence 99977766443
No 33
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.38 E-value=1.3e-12 Score=130.14 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=82.8
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch---------------------H
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------A 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------a 458 (552)
..+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|+|.+.+.++.... .
T Consensus 22 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 99 (247)
T 2ff7_A 22 PVILDNINLSIKQGE--VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 99 (247)
T ss_dssp CEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBH
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccH
Confidence 358999999999999 99999999999999999999999999999998776642111 0
Q ss_pred HHH------------HHHHHHHcCCcee-------------ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 VEQ------------LRTHARRLQVPIF-------------EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 ~eq------------L~~~~~~l~v~~~-------------~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+. +....+.+++.-+ .........+..|.+|++|+..+|+++|+|||+...+..
T Consensus 100 ~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~ 179 (247)
T 2ff7_A 100 IDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179 (247)
T ss_dssp HHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111 1111111222100 011245566777899999999999999999999877665
Q ss_pred HHH
Q 008816 514 EYY 516 (552)
Q Consensus 514 ~lm 516 (552)
...
T Consensus 180 ~~~ 182 (247)
T 2ff7_A 180 SEH 182 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 34
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.38 E-value=8.8e-13 Score=132.47 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=81.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc----------c--------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----------S-------------- 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r----------~-------------- 456 (552)
.+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|+|.+.+.++.. .
T Consensus 20 ~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (262)
T 1b0u_A 20 EVLKGVSLQARAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTM 97 (262)
T ss_dssp EEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEE
T ss_pred EEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEE
Confidence 58999999999999 999999999999999999999999999999887655420 0
Q ss_pred -----------hHHHHHH-------------------HHHHHcCCcee-e--cCCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 008816 457 -----------GAVEQLR-------------------THARRLQVPIF-E--KGYEKDPAIVAKEAIQEATRNGSDVVLV 503 (552)
Q Consensus 457 -----------ga~eqL~-------------------~~~~~l~v~~~-~--~~~~~dp~~iar~aIa~a~~~~~DvVII 503 (552)
...+.+. .+.+.+++.-+ . ........+..|.+|++|+..+|+++|+
T Consensus 98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 177 (262)
T 1b0u_A 98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF 177 (262)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0111111 11222333221 1 1123444555688999999999999999
Q ss_pred eCCCCCCChHHH
Q 008816 504 DTAGRMQVIIEY 515 (552)
Q Consensus 504 DtpGr~~~~~~l 515 (552)
|||+...+....
T Consensus 178 DEPts~LD~~~~ 189 (262)
T 1b0u_A 178 DEPTSALDPELV 189 (262)
T ss_dssp ESTTTTSCHHHH
T ss_pred eCCCccCCHHHH
Confidence 999977766443
No 35
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.37 E-value=8.1e-13 Score=139.28 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=80.5
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc-------h-------------H-
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS-------G-------------A- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~-------g-------------a- 458 (552)
..+|++++|.+.+|+ +++|+||||||||||+++|++++.+..|+|.+.+.++... + .
T Consensus 24 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 101 (372)
T 1v43_A 24 FTAVNKLNLTIKDGE--FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 101 (372)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred EEEEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 357899999999999 9999999999999999999999999999999877654210 0 0
Q ss_pred -----------------HHHHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 -----------------VEQLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 -----------------~eqL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+....+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|||....|...
T Consensus 102 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 176 (372)
T 1v43_A 102 ENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 176 (372)
T ss_dssp HHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 011222333344432111 11122233447899999999999999999997665543
No 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.37 E-value=1e-12 Score=137.28 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=82.5
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc--------------------hHHH-
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--------------------GAVE- 460 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~--------------------ga~e- 460 (552)
+|++++|.+++|+ +++|+||||||||||+++|++++.+..|+|.+.+.+.... ...+
T Consensus 15 ~l~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGE--YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTC--EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCC--EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHH
Confidence 8999999999999 9999999999999999999999999999999877664210 1111
Q ss_pred --------------HHHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 461 --------------QLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 461 --------------qL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
....+.+.+++.-+. .....+..+..|.+|++|+..+|+++|+|||....|...
T Consensus 93 l~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~ 162 (348)
T 3d31_A 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162 (348)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 122233344443221 112345566678999999999999999999997665543
No 37
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.37 E-value=1.6e-12 Score=130.74 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=83.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC--------------------cchHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------------------RSGAV 459 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~--------------------r~ga~ 459 (552)
..+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|+|.+.+.++. .....
T Consensus 20 ~~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGE--CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 358999999999999 99999999999999999999999999999887654421 00111
Q ss_pred HH-----------------HHHHHHHcCCc--eee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHH
Q 008816 460 EQ-----------------LRTHARRLQVP--IFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYY 516 (552)
Q Consensus 460 eq-----------------L~~~~~~l~v~--~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm 516 (552)
+. ...+.+.+++. -+. ........+..|.+|++|+..+|+++|+|||+...|.....
T Consensus 98 enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~ 175 (266)
T 2yz2_A 98 DEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175 (266)
T ss_dssp HHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHH
Confidence 11 22233344543 111 12234556667899999999999999999999777664433
No 38
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.37 E-value=6.2e-13 Score=136.68 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=83.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch---------------------H
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------A 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------a 458 (552)
..+|++++|.+++|+ +++|||||||||||+++.|++++.+..|.|.+.+.|+.... .
T Consensus 67 ~~vL~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv 144 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQ--TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144 (306)
T ss_dssp CEEEEEEEEEECTTC--EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEH
T ss_pred CceeeeeeEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccH
Confidence 458999999999999 99999999999999999999999999999998877653211 0
Q ss_pred H------------HHHHHHHHHcCCc-------------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 V------------EQLRTHARRLQVP-------------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 ~------------eqL~~~~~~l~v~-------------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
. +.+....+..++. +-..+......+..|.+|++|+..+|+++|+|+|+...+..
T Consensus 145 ~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred HHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 1 1111111111111 11123345667777999999999999999999999877664
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 225 ~ 225 (306)
T 3nh6_A 225 N 225 (306)
T ss_dssp H
T ss_pred H
Confidence 4
No 39
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.37 E-value=1.1e-12 Score=128.25 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=82.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC----------------Cc-chHHHH--
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------------FR-SGAVEQ-- 461 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~----------------~r-~ga~eq-- 461 (552)
.+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|+|.+.+.+. |. ....+.
T Consensus 23 ~il~~vsl~i~~Ge--~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 100 (214)
T 1sgw_A 23 PVLERITMTIEKGN--VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLK 100 (214)
T ss_dssp EEEEEEEEEEETTC--CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred eEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHH
Confidence 58999999999999 9999999999999999999999999999998866442 10 111222
Q ss_pred --------------HHHHHHHcCCcee-ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 462 --------------LRTHARRLQVPIF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 462 --------------L~~~~~~l~v~~~-~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
+..+.+.+++.-+ .........+..|.+|++|+..+|+++|+|||+...+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~ 167 (214)
T 1sgw_A 101 AVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 167 (214)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred HHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence 2223344454322 112235667777899999999999999999999876654
No 40
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.36 E-value=1.5e-12 Score=137.22 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=81.9
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------------------ 455 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------------------ 455 (552)
..+|++++|.+.+|+ +++|+||||||||||+++|++++.+..|+|.+.+.++..
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~ 93 (372)
T 1g29_1 16 VTAVREMSLEVKDGE--FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (372)
T ss_dssp EEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccC
Confidence 358899999999999 999999999999999999999999999999886544210
Q ss_pred --chHHHH------------------HHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 456 --SGAVEQ------------------LRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 456 --~ga~eq------------------L~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
....+. ...+.+.+++.-+.. .......+..|.+|++|+..+|+++|+|||....|..
T Consensus 94 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 173 (372)
T 1g29_1 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173 (372)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 011111 122233344432211 2234556667899999999999999999999766554
No 41
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.36 E-value=1.3e-12 Score=129.62 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=80.7
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-------c-------------hHH--
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------S-------------GAV-- 459 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r-------~-------------ga~-- 459 (552)
+|++++|.+++ + +++|+|||||||||+++.|++++.+..|.|.+.+.++.. . ...
T Consensus 14 ~l~~isl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-D--YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-S--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-E--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 48899999999 8 999999999999999999999999999999987655310 0 011
Q ss_pred --------------HHHHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 --------------EQLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 --------------eqL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+....+.+.+++.-+. ........+..|.+|++|+..+|+++|+|||+...|...
T Consensus 91 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~ 161 (240)
T 2onk_A 91 IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT 161 (240)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 1122233344443211 122345566778999999999999999999997776644
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.35 E-value=1.1e-12 Score=137.33 Aligned_cols=110 Identities=16% Similarity=0.089 Sum_probs=81.4
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc------------c-------------
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------------S------------- 456 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r------------~------------- 456 (552)
+|++++|.+++|+ +++|+||||||||||+++|++++.+..|+|.+.+.++.. .
T Consensus 20 vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGE--RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTC--EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 7899999999999 999999999999999999999999999999886544210 0
Q ss_pred hH------------------HHHHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 457 GA------------------VEQLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 457 ga------------------~eqL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.. .+....+.+.+++.-+.. ....+..+..|.+|++|+..+|+++|+|||....|..
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~ 174 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 00 112223334445532211 1234556667899999999999999999999776653
No 43
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.35 E-value=2.8e-12 Score=130.06 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=79.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC--c---------ch------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--R---------SG------------ 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~--r---------~g------------ 457 (552)
.+|++++|.+.+|+ +++|+||||||||||++.|++++.+..|+|.+.+.++. . .+
T Consensus 35 ~vL~~isl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (279)
T 2ihy_A 35 TILKKISWQIAKGD--KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQE 112 (279)
T ss_dssp EEEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCT
T ss_pred EEEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCC
Confidence 58999999999999 99999999999999999999999999999998776542 1 00
Q ss_pred ---HHHHH----------------------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 458 ---AVEQL----------------------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 458 ---a~eqL----------------------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
..+.+ ..+.+.+++.-+. ........+..|.+|++|+..+|+++|+|||+...
T Consensus 113 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~L 192 (279)
T 2ihy_A 113 GERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192 (279)
T ss_dssp TSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred CCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence 01111 1111122221110 01123344455889999999999999999999777
Q ss_pred ChHH
Q 008816 511 VIIE 514 (552)
Q Consensus 511 ~~~~ 514 (552)
|...
T Consensus 193 D~~~ 196 (279)
T 2ihy_A 193 DFIA 196 (279)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6644
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.34 E-value=2.2e-12 Score=128.59 Aligned_cols=114 Identities=16% Similarity=0.092 Sum_probs=79.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHH--HhhCCceEEEeeecCCcc---------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTFRS--------------------- 456 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~--l~~~ggkVll~~~D~~r~--------------------- 456 (552)
..+|++++|.+.+|+ +++|+|||||||||+++.|+++ +.+..|+|.+.+.++...
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 16 ETILKGVNLVVPKGE--VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp EEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred EEEEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 358999999999999 9999999999999999999998 678889998876553100
Q ss_pred --hHHHHH---------------------HHHHHHcCCc--eeecC-CC-CCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 457 --GAVEQL---------------------RTHARRLQVP--IFEKG-YE-KDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 457 --ga~eqL---------------------~~~~~~l~v~--~~~~~-~~-~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
...+.+ ....+.+++. +.... .. ....+..|.+|++|+..+|+++|+|||+..
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~ 173 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSG 173 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGT
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC
Confidence 011111 1122233542 11111 22 455667789999999999999999999977
Q ss_pred CChHHH
Q 008816 510 QVIIEY 515 (552)
Q Consensus 510 ~~~~~l 515 (552)
.|....
T Consensus 174 LD~~~~ 179 (250)
T 2d2e_A 174 LDIDAL 179 (250)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 766443
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.34 E-value=3.3e-12 Score=128.53 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=84.6
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC------cch------------HHHH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSG------------AVEQ 461 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~------r~g------------a~eq 461 (552)
..+|++++|.+. |+ +++|+|||||||||+++.|++++ +..|+|.+.+.+.. +.+ ..+.
T Consensus 18 ~~il~~vsl~i~-Ge--~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~en 93 (263)
T 2pjz_A 18 RFSLENINLEVN-GE--KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDI 93 (263)
T ss_dssp EEEEEEEEEEEC-SS--EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHH
T ss_pred ceeEEeeeEEEC-CE--EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHH
Confidence 358999999999 99 99999999999999999999999 99999988664421 111 1122
Q ss_pred H--------------HHHHHHcCCc-ee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 462 L--------------RTHARRLQVP-IF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 462 L--------------~~~~~~l~v~-~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
+ ..+.+.+++. -. .........+..|.+|++|+..+|+++|+|||+...+... ...+.++
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~-~~~l~~~ 170 (263)
T 2pjz_A 94 VYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR-RHVISRY 170 (263)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHH-HHHHHHH
T ss_pred HHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHH-HHHHHHH
Confidence 2 2233444554 21 1223456677779999999999999999999997665543 3333333
No 46
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.33 E-value=1.6e-12 Score=128.87 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=86.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc---------c------------hH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------S------------GA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r---------~------------ga 458 (552)
..+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|+|.+.+.++.. . ..
T Consensus 15 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv 92 (243)
T 1mv5_A 15 EQILRDISFEAQPNS--IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTI 92 (243)
T ss_dssp SCSEEEEEEEECTTE--EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEH
T ss_pred CceEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccH
Confidence 358999999999999 999999999999999999999999999999987654310 0 00
Q ss_pred -------------HHHHHHHHHHcCCcee-------------ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 459 -------------VEQLRTHARRLQVPIF-------------EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 459 -------------~eqL~~~~~~l~v~~~-------------~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
.+.+....+.+++.-+ .........+..|.+|++|+..+|+++|+|||+...+.
T Consensus 93 ~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~ 172 (243)
T 1mv5_A 93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172 (243)
T ss_dssp HHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCS
T ss_pred HHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 1112222223332211 11234566777799999999999999999999977655
Q ss_pred H---HHHHHHHHH
Q 008816 513 I---EYYLFLLHI 522 (552)
Q Consensus 513 ~---~lm~eL~kl 522 (552)
. .+++.|..+
T Consensus 173 ~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 173 ESESMVQKALDSL 185 (243)
T ss_dssp SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3 344445444
No 47
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.33 E-value=4.4e-12 Score=126.78 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=82.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE------EeeecC--C-cchH------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM------MAACDT--F-RSGA------------ 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl------l~~~D~--~-r~ga------------ 458 (552)
..+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|+|. ++..+. + ....
T Consensus 18 ~~vl~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 95 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGD--ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHI 95 (253)
T ss_dssp TEEEEEEEEEEETTC--EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGS
T ss_pred CeEEEEEEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhc
Confidence 358999999999999 9999999999999999999999999888774 232321 1 0001
Q ss_pred ----------HHHHHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 459 ----------VEQLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 459 ----------~eqL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
.+....+.+.+++.-+. .....+..+..|.+|++|+..+|+++|+|||+...|....
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~ 164 (253)
T 2nq2_C 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164 (253)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 12233344455554221 1234566777789999999999999999999977665443
No 48
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.32 E-value=3.7e-12 Score=127.11 Aligned_cols=112 Identities=18% Similarity=0.079 Sum_probs=80.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc----------------------hH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS----------------------GA 458 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~----------------------ga 458 (552)
.+|++++|.+.+|+ +++|+|||||||||+++.|++++.+. |+|.+.+.++... ..
T Consensus 14 ~vl~~vsl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGE--ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 47899999999999 99999999999999999999999999 9998876553210 01
Q ss_pred H-------------HHHHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCC-------EEEEeCCCCCCChHHH
Q 008816 459 V-------------EQLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSD-------VVLVDTAGRMQVIIEY 515 (552)
Q Consensus 459 ~-------------eqL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~D-------vVIIDtpGr~~~~~~l 515 (552)
. +....+.+.+++.-+. ........+..|.+|++|+..+|+ ++|+|||+...+....
T Consensus 91 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~ 169 (249)
T 2qi9_C 91 WHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 169 (249)
T ss_dssp HHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHH
T ss_pred HHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHH
Confidence 1 1122223333432111 122344555668999999999999 9999999977766443
No 49
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.32 E-value=3.7e-12 Score=128.58 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=81.8
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hH
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GA 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga 458 (552)
..+|++++|.+.+|+ +++|+||||||||||++.|++++.+..|+|.+.+.++... ..
T Consensus 32 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv 109 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGK--VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109 (271)
T ss_dssp SCCEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBH
T ss_pred ceeeEeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccH
Confidence 458999999999999 9999999999999999999999999999999877654211 01
Q ss_pred HHHHH----------------------HHHHHc--CCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 459 VEQLR----------------------THARRL--QVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 459 ~eqL~----------------------~~~~~l--~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
.+.+. .+.+.+ ++.-+ .........+..|.+|++|+..+|+++|+|||+...|.
T Consensus 110 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 189 (271)
T 2ixe_A 110 RENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189 (271)
T ss_dssp HHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred HHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 11110 011111 11100 11233455666789999999999999999999977766
Q ss_pred HHHH
Q 008816 513 IEYY 516 (552)
Q Consensus 513 ~~lm 516 (552)
....
T Consensus 190 ~~~~ 193 (271)
T 2ixe_A 190 GNQL 193 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 50
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.31 E-value=6.1e-12 Score=126.67 Aligned_cols=120 Identities=17% Similarity=0.112 Sum_probs=83.9
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH--hhCCceEEEeeecCCc----------c-----------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTFR----------S----------- 456 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l--~~~ggkVll~~~D~~r----------~----------- 456 (552)
..+|++++|.+.+|+ +++|+|||||||||+++.|++++ .+..|+|.+.+.++.. .
T Consensus 33 ~~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~ 110 (267)
T 2zu0_C 33 KAILRGLSLDVHPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP 110 (267)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccc
Confidence 358999999999999 99999999999999999999984 5678888876654310 0
Q ss_pred --hHHH-------------------------HHHHHHHHcCCc--eeecCC--CCCHHHHHHHHHHHHHhCCCCEEEEeC
Q 008816 457 --GAVE-------------------------QLRTHARRLQVP--IFEKGY--EKDPAIVAKEAIQEATRNGSDVVLVDT 505 (552)
Q Consensus 457 --ga~e-------------------------qL~~~~~~l~v~--~~~~~~--~~dp~~iar~aIa~a~~~~~DvVIIDt 505 (552)
...+ .+..+.+.+++. +..... .....+..|.+|++|+..+|+++|+||
T Consensus 111 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDE 190 (267)
T 2zu0_C 111 GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 190 (267)
T ss_dssp TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0001 111223334553 112221 266777789999999999999999999
Q ss_pred CCCCCChHHHHHHHHHH
Q 008816 506 AGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 506 pGr~~~~~~lm~eL~kl 522 (552)
|+...|.... ..+.++
T Consensus 191 Pts~LD~~~~-~~l~~~ 206 (267)
T 2zu0_C 191 SDSGLDIDAL-KVVADG 206 (267)
T ss_dssp TTTTCCHHHH-HHHHHH
T ss_pred CCCCCCHHHH-HHHHHH
Confidence 9977665443 333333
No 51
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.31 E-value=5.8e-12 Score=126.31 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=79.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------------------hHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------------GAV 459 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------------------ga~ 459 (552)
.+|++++|.+++|+ +++|+|||||||||+++.|++++.+ .|.|.+.+.|+... ...
T Consensus 34 ~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 110 (260)
T 2ghi_A 34 RTLKSINFFIPSGT--TCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110 (260)
T ss_dssp CSEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred ceeEeeEEEECCCC--EEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHH
Confidence 58999999999999 9999999999999999999999876 68888876553110 011
Q ss_pred H------------HHHHHHHHcCCce-------------eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 460 E------------QLRTHARRLQVPI-------------FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 460 e------------qL~~~~~~l~v~~-------------~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+ ++....+.+++.- -.........+..|.+|++|+..+|+++|+|||+...+...
T Consensus 111 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 190 (260)
T 2ghi_A 111 YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190 (260)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 1 1111122222210 01123456677789999999999999999999997776654
No 52
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.29 E-value=1.1e-11 Score=121.97 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=82.3
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee------ecC--CcchHHHHH---------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA------CDT--FRSGAVEQL--------- 462 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~------~D~--~r~ga~eqL--------- 462 (552)
..+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|.|.+.+ .+. |.....+.+
T Consensus 21 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~ 98 (229)
T 2pze_A 21 TPVLKDINFKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEY 98 (229)
T ss_dssp CCSEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHH
T ss_pred ceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChH
Confidence 358999999999999 9999999999999999999999999888886632 221 111111111
Q ss_pred --HHHHHHcCCc-------e------eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHH
Q 008816 463 --RTHARRLQVP-------I------FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLH 521 (552)
Q Consensus 463 --~~~~~~l~v~-------~------~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~k 521 (552)
....+..++. . -.........+..|.+|++|+..+|+++|+|||+...+. .....+.+
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~-~~~~~i~~ 171 (229)
T 2pze_A 99 RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV-LTEKEIFE 171 (229)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH-HHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH-HHHHHHHH
Confidence 1111122221 0 001235667777899999999999999999999976655 44444444
No 53
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.28 E-value=6.4e-12 Score=133.24 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=90.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--------------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga--------------------- 458 (552)
..+|++++|.+.+|+ +++|+||||||||||+++|++++. ..|+|.+.+.|+.....
T Consensus 34 ~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv 110 (390)
T 3gd7_A 34 NAILENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTF 110 (390)
T ss_dssp CCSEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEH
T ss_pred eEEeeceeEEEcCCC--EEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCH
Confidence 458999999999999 999999999999999999999987 88999998876532111
Q ss_pred -----------HHHHHHHHHHcCCceeec-------------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 459 -----------VEQLRTHARRLQVPIFEK-------------GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 459 -----------~eqL~~~~~~l~v~~~~~-------------~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+......+.+++.-+.. +......+..|.+|++|+..+|+++|+|||....+. .
T Consensus 111 ~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~-~ 189 (390)
T 3gd7_A 111 RKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP-V 189 (390)
T ss_dssp HHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCH-H
T ss_pred HHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH-H
Confidence 111122223333321111 111566777799999999999999999999976654 4
Q ss_pred HHHHHHHHhhhhccccEEEEEEe
Q 008816 515 YYLFLLHIYLHTVCEHFVNIITF 537 (552)
Q Consensus 515 lm~eL~kl~~~~~~~~~~~ii~~ 537 (552)
....+..++........+.++++
T Consensus 190 ~~~~l~~~l~~~~~~~tvi~vtH 212 (390)
T 3gd7_A 190 TYQIIRRTLKQAFADCTVILCEA 212 (390)
T ss_dssp HHHHHHHHHHTTTTTSCEEEECS
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc
Confidence 44444443332222333444433
No 54
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.27 E-value=7.7e-12 Score=123.69 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=83.1
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe------eecCC--cchHHHHH---------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA------ACDTF--RSGAVEQL--------- 462 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~------~~D~~--r~ga~eqL--------- 462 (552)
..+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|+|.+. ..+.+ .....+.+
T Consensus 18 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~ 95 (237)
T 2cbz_A 18 PPTLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEP 95 (237)
T ss_dssp CCSEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTT
T ss_pred CceeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHH
Confidence 358999999999999 999999999999999999999999988888653 22221 11111111
Q ss_pred --HHHHHHcCC-------c------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 463 --RTHARRLQV-------P------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 463 --~~~~~~l~v-------~------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
....+.+++ + +-.........+..|.+|++|+..+|+++|+|||+...+.......+..|
T Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 96 YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 111111111 0 11123356677788999999999999999999999776654444333333
No 55
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.22 E-value=3.5e-11 Score=133.53 Aligned_cols=114 Identities=24% Similarity=0.176 Sum_probs=83.3
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---------h-------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------G------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---------g------------- 457 (552)
..+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|+|.+.+.|.... +
T Consensus 356 ~~~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 433 (582)
T 3b5x_A 356 KPALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433 (582)
T ss_pred ccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccH
Confidence 458999999999999 9999999999999999999999999999999887664210 0
Q ss_pred ------------HHHHHHHHHHHcCCc-------------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 458 ------------AVEQLRTHARRLQVP-------------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 458 ------------a~eqL~~~~~~l~v~-------------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+++....+..++. +-+.+......+..|.+|++|+..+|+++|+|||+...|.
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b5x_A 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513 (582)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 011122222222221 0111234455667789999999999999999999987766
Q ss_pred HHH
Q 008816 513 IEY 515 (552)
Q Consensus 513 ~~l 515 (552)
...
T Consensus 514 ~~~ 516 (582)
T 3b5x_A 514 ESE 516 (582)
T ss_pred HHH
Confidence 543
No 56
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.21 E-value=2.1e-11 Score=135.62 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=84.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--------------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga--------------------- 458 (552)
..+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|+|.+.+.|+.....
T Consensus 356 ~~~l~~isl~i~~Ge--~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 433 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGS--LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTI 433 (587)
T ss_dssp CCSEEEEEEEECTTC--EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEH
T ss_pred CcceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccH
Confidence 458999999999999 999999999999999999999999999999998776531110
Q ss_pred ------------HHHHHHHHHHcCC-----------c--eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 ------------VEQLRTHARRLQV-----------P--IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 ------------~eqL~~~~~~l~v-----------~--~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+++....+..++ . +-+.+......+..|.+|++|+..+|+++|+|||+...|..
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~ 513 (587)
T 3qf4_A 434 KENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513 (587)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 1111111111111 1 11223456677788999999999999999999999777664
Q ss_pred HH
Q 008816 514 EY 515 (552)
Q Consensus 514 ~l 515 (552)
..
T Consensus 514 ~~ 515 (587)
T 3qf4_A 514 TE 515 (587)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 57
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.21 E-value=4.8e-11 Score=121.68 Aligned_cols=118 Identities=15% Similarity=0.176 Sum_probs=81.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe------eecC--CcchHHHHHH---------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA------ACDT--FRSGAVEQLR--------- 463 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~------~~D~--~r~ga~eqL~--------- 463 (552)
.+|++++|.+.+|+ +++|+|||||||||+++.|++++.+..|+|.+. ..+. |.....+.+.
T Consensus 52 ~vl~~isl~i~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 129 (290)
T 2bbs_A 52 PVLKDINFKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRY 129 (290)
T ss_dssp CSEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHH
T ss_pred eEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHH
Confidence 58999999999999 999999999999999999999999888877653 2221 2111222221
Q ss_pred -HHHHHcCCce-------------eecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHH
Q 008816 464 -THARRLQVPI-------------FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLH 521 (552)
Q Consensus 464 -~~~~~l~v~~-------------~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~k 521 (552)
...+..++.- -.........+..|.+|++|+..+|+++|+|||+...+... ...+.+
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~-~~~i~~ 200 (290)
T 2bbs_A 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT-EKEIFE 200 (290)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH-HHHHHH
T ss_pred HHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHH-HHHHHH
Confidence 1111222210 00113456677789999999999999999999997665544 444444
No 58
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.21 E-value=1.4e-11 Score=136.66 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=83.6
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch---------------------H
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------A 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------a 458 (552)
..+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|+|.+.+.|..... .
T Consensus 354 ~~~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv 431 (578)
T 4a82_A 354 APILKDINLSIEKGE--TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTV 431 (578)
T ss_dssp CCSEEEEEEEECTTC--EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBH
T ss_pred CcceeeeEEEECCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccH
Confidence 458999999999999 99999999999999999999999999999998876642110 0
Q ss_pred ------------HHHHHHHHHHcCC-------c------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 ------------VEQLRTHARRLQV-------P------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 ------------~eqL~~~~~~l~v-------~------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+.+...++..++ | +-+.+......+..|.+|++|+..+|+++|+|||+...|..
T Consensus 432 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~ 511 (578)
T 4a82_A 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511 (578)
T ss_dssp HHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 1112222222211 1 11223345667778999999999999999999999877665
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 512 ~ 512 (578)
T 4a82_A 512 S 512 (578)
T ss_dssp H
T ss_pred H
Confidence 3
No 59
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.19 E-value=5e-11 Score=132.61 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=84.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc------------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------------------------ 456 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~------------------------ 456 (552)
.+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|+|.+.+.|+...
T Consensus 358 ~vl~~isl~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 435 (595)
T 2yl4_A 358 PIFQDFSLSIPSGS--VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIA 435 (595)
T ss_dssp EEEEEEEEEECTTC--EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHH
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHH
Confidence 58999999999999 9999999999999999999999999999999877654211
Q ss_pred ------------hHHHHHHHHHHHcCCc-------------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 457 ------------GAVEQLRTHARRLQVP-------------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 457 ------------ga~eqL~~~~~~l~v~-------------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
...+++....+..++. +-+.+......+..|.+|++|+..+|+++|+|||+...|
T Consensus 436 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD 515 (595)
T 2yl4_A 436 ENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515 (595)
T ss_dssp HHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCC
T ss_pred HHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCC
Confidence 0112222223333221 111224456677889999999999999999999998776
Q ss_pred hHH
Q 008816 512 IIE 514 (552)
Q Consensus 512 ~~~ 514 (552)
...
T Consensus 516 ~~~ 518 (595)
T 2yl4_A 516 AEN 518 (595)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 60
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.19 E-value=3.7e-11 Score=133.29 Aligned_cols=114 Identities=23% Similarity=0.198 Sum_probs=84.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch----------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------- 457 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------- 457 (552)
..+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|+|.+.+.|+....
T Consensus 356 ~~~l~~v~~~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 433 (582)
T 3b60_A 356 VPALRNINLKIPAGK--TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433 (582)
T ss_dssp CCSEEEEEEEECTTC--EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBH
T ss_pred CccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCH
Confidence 458999999999999 99999999999999999999999999999998776642110
Q ss_pred ------------HHHHHHHHHHHcCCc-------------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 458 ------------AVEQLRTHARRLQVP-------------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 458 ------------a~eqL~~~~~~l~v~-------------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+++....+..++. +-+.+......+..|.+|++|+..+|+++|+|||+...|.
T Consensus 434 ~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b60_A 434 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513 (582)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCH
Confidence 011122222222221 1112334566777799999999999999999999987766
Q ss_pred HHH
Q 008816 513 IEY 515 (552)
Q Consensus 513 ~~l 515 (552)
...
T Consensus 514 ~~~ 516 (582)
T 3b60_A 514 ESE 516 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 61
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.19 E-value=2.4e-11 Score=135.27 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=81.9
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH---------------------
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--------------------- 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga--------------------- 458 (552)
..+|++++|.+++|+ +++|+|||||||||+++.|++++.+..|+|.+.+.|+.....
T Consensus 368 ~~~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 445 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQ--KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTV 445 (598)
T ss_dssp SCSCCSEEEECCTTC--EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBH
T ss_pred CccccceEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccH
Confidence 358999999999999 999999999999999999999999999999998877532211
Q ss_pred HHHH------------HHHHHHcCCc-------------eeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 VEQL------------RTHARRLQVP-------------IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 ~eqL------------~~~~~~l~v~-------------~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+.+ ....+..++. +-+.+......+..|.+|++|+..+|+++|+|||+...|..
T Consensus 446 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~ 525 (598)
T 3qf4_B 446 KENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525 (598)
T ss_dssp HHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 1111 1111111110 00111234556667899999999999999999999877664
Q ss_pred H
Q 008816 514 E 514 (552)
Q Consensus 514 ~ 514 (552)
.
T Consensus 526 ~ 526 (598)
T 3qf4_B 526 T 526 (598)
T ss_dssp H
T ss_pred H
Confidence 4
No 62
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.10 E-value=1.1e-10 Score=140.76 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=86.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+++|+ .|+|||++||||||++..|.+++.+..|+|.+.+.|+....
T Consensus 1093 ~VL~~isl~I~~Ge--~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQ--TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIA 1170 (1321)
T ss_dssp CSEEEEEEEECTTC--EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred ccccceeEEECCCC--EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHH
Confidence 58999999999999 99999999999999999999999999999999888753211
Q ss_pred ------------HHHHHHHHHHHcCC-------------ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 458 ------------AVEQLRTHARRLQV-------------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 458 ------------a~eqL~~~~~~l~v-------------~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+++...++..++ .+-+.|......+..+.+|+||+..+++++|+|||+...|.
T Consensus 1171 eNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1171 ENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250 (1321)
T ss_dssp HHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTS
T ss_pred HHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCH
Confidence 12233333332221 22233455667778899999999999999999999987766
Q ss_pred HH
Q 008816 513 IE 514 (552)
Q Consensus 513 ~~ 514 (552)
+.
T Consensus 1251 ~t 1252 (1321)
T 4f4c_A 1251 ES 1252 (1321)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.05 E-value=2e-10 Score=126.45 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=74.2
Q ss_pred ccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec-------CC---cchHHHHHHH---------
Q 008816 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-------TF---RSGAVEQLRT--------- 464 (552)
Q Consensus 404 ~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D-------~~---r~ga~eqL~~--------- 464 (552)
..+++.+.+|+ +++|+|||||||||+++.|++++.+..|+|.+.+.. .+ .....+.+..
T Consensus 285 ~~~~~~i~~Ge--i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 362 (538)
T 3ozx_A 285 VVDNGEAKEGE--IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTS 362 (538)
T ss_dssp EECCEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTT
T ss_pred EeccceECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchh
Confidence 34456678999 999999999999999999999999998888653322 21 1111222211
Q ss_pred ------HHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHH
Q 008816 465 ------HARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEY 515 (552)
Q Consensus 465 ------~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~l 515 (552)
+.+.+++.-+. .....+..+..|.+|++|+..+|+++|+|||+...|....
T Consensus 363 ~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 421 (538)
T 3ozx_A 363 SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421 (538)
T ss_dssp SHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 11112222111 1123455667799999999999999999999987766543
No 64
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.05 E-value=2.4e-10 Score=137.45 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=83.3
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch---------------------H
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG---------------------A 458 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g---------------------a 458 (552)
..+|++++|.+++|+ +++|||||||||||+++.|++++.+..|+|.+.+.|+.... .
T Consensus 403 ~~vL~~isl~i~~G~--~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti 480 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQ--TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTI 480 (1284)
T ss_dssp CCSEEEEEEEECTTC--EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCH
T ss_pred CcceecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccH
Confidence 458999999999999 99999999999999999999999999999998776542110 0
Q ss_pred ------------HHHHHHHHHHcCC-------------ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 459 ------------VEQLRTHARRLQV-------------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 459 ------------~eqL~~~~~~l~v-------------~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
.+++...++..++ .+-+.+......+..|.+|++|+..+|+++|+|||+...|..
T Consensus 481 ~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~ 560 (1284)
T 3g5u_A 481 AENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560 (1284)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 1111111111111 111233456777888999999999999999999999877654
No 65
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.03 E-value=3.3e-10 Score=136.57 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=86.7
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc-----------------------
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR----------------------- 455 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r----------------------- 455 (552)
...+|+|++|.+++|+ .++||||+||||||++..|.+++.+..|+|.+.+.|+..
T Consensus 430 ~~~vL~~isl~i~~G~--~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~T 507 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQ--TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCT 507 (1321)
T ss_dssp TSCSEEEEEEEECTTC--EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEE
T ss_pred CCceeeceEEeecCCc--EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCc
Confidence 3468999999999999 999999999999999999999999999999887766421
Q ss_pred ---------c-hHHHHHHHHHHHc-------------CCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 456 ---------S-GAVEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 456 ---------~-ga~eqL~~~~~~l-------------~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
. ...+++...++.. +-.+-+.|......+..|.+|+||+..+++++|+|+|+...|.
T Consensus 508 I~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 508 IEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred hhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence 1 1122222222222 1223345566788889999999999999999999999987665
Q ss_pred H
Q 008816 513 I 513 (552)
Q Consensus 513 ~ 513 (552)
.
T Consensus 588 ~ 588 (1321)
T 4f4c_A 588 E 588 (1321)
T ss_dssp T
T ss_pred H
Confidence 3
No 66
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.03 E-value=2e-09 Score=103.01 Aligned_cols=104 Identities=11% Similarity=0.115 Sum_probs=69.1
Q ss_pred cccccccc-cccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCcee-----
Q 008816 401 DILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF----- 474 (552)
Q Consensus 401 diL~di~~-~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~----- 474 (552)
..|+++.. .+++|+ +++|+||||+||||++..|++.+.+.+++|++++.+.. .+++......+++...
T Consensus 10 ~~Ld~~~~ggi~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 83 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGF--FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES----RDSIIRQAKQFNWDFEEYIEK 83 (235)
T ss_dssp HHHHGGGTTSEETTC--EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC----HHHHHHHHHHTTCCCGGGBTT
T ss_pred hHHHHHhcCCCcCCC--EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC----HHHHHHHHHHhcchHHHHhhC
Confidence 34455554 567888 99999999999999999999988888999999988763 2333333333333211
Q ss_pred -----ecC----------CCCCHHHHHHHHHHHHHhCCCC--EEEEeCCCCCC
Q 008816 475 -----EKG----------YEKDPAIVAKEAIQEATRNGSD--VVLVDTAGRMQ 510 (552)
Q Consensus 475 -----~~~----------~~~dp~~iar~aIa~a~~~~~D--vVIIDtpGr~~ 510 (552)
... ...+...+.....+.+...+++ +||+|+|+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 84 KLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp TEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred CEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 000 0114455544444445556899 99999998543
No 67
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.02 E-value=9.7e-12 Score=119.08 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=63.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceee---------------------
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE--------------------- 475 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~--------------------- 475 (552)
+++|+||||+||||++++|++++. ..| |.+.+.++. ++..+.+++++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~------~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~ 74 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTE------EVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRE 74 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECC------EEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCC
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecc------hhHhhhceEEEEEEecccceehhhcccccCCccccc
Confidence 899999999999999999999998 666 766554431 111222222222211
Q ss_pred ---cCCCCCHHHHHHH---HHHH---HHhCCCCEEEEeCCCCCCCh-HHHHHHHHHHhh
Q 008816 476 ---KGYEKDPAIVAKE---AIQE---ATRNGSDVVLVDTAGRMQVI-IEYYLFLLHIYL 524 (552)
Q Consensus 476 ---~~~~~dp~~iar~---aIa~---a~~~~~DvVIIDtpGr~~~~-~~lm~eL~kl~~ 524 (552)
..+..++....+. ++.+ |...++|++|+||||+++.. ...++.|.++..
T Consensus 75 ~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 75 CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 1223356553332 3333 34688999999999988643 457777777764
No 68
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1e-09 Score=122.44 Aligned_cols=111 Identities=18% Similarity=0.128 Sum_probs=76.2
Q ss_pred ccccccccccCC-----CcEEEEEEcCCCCChhHHHHHHHHHHhhCCce------EEEeeecCC---cchHHHHH-----
Q 008816 402 ILRDVHAAKEQR-----KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS------VMMAACDTF---RSGAVEQL----- 462 (552)
Q Consensus 402 iL~di~~~~~~g-----~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggk------Vll~~~D~~---r~ga~eqL----- 462 (552)
++++++|.+..| + +++|+||||+||||+++.|++++.+..|+ +.+...+.. .....+.+
T Consensus 362 ~l~~vsl~v~~G~~~~GE--iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~ 439 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSE--ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIR 439 (608)
T ss_dssp ECSSCEEEECCEECCTTC--EEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCS
T ss_pred ccCceEEEEecCccccce--EEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhh
Confidence 567888888877 5 89999999999999999999999987664 444444421 11111111
Q ss_pred ---------HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 463 ---------RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 463 ---------~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+.+++.-+. .....+-.+..|.+|++|+..+|+++|+|||+...|...
T Consensus 440 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~ 502 (608)
T 3j16_B 440 GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502 (608)
T ss_dssp STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHH
T ss_pred cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHH
Confidence 1122233332111 123456677779999999999999999999998776543
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.99 E-value=3.2e-10 Score=136.33 Aligned_cols=112 Identities=18% Similarity=0.217 Sum_probs=83.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch-----------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG----------------------- 457 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g----------------------- 457 (552)
.+|++++|.+++|+ +++|||||||||||+++.|++++.+..|+|.+.+.|+....
T Consensus 1047 ~~l~~vsl~i~~Ge--~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 1124 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQ--TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124 (1284)
T ss_dssp CSBSSCCEEECSSS--EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHH
T ss_pred eeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHH
Confidence 48999999999999 99999999999999999999999999999988776642110
Q ss_pred ------------HHHHHHHHHHHcCC-------------ceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 458 ------------AVEQLRTHARRLQV-------------PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 458 ------------a~eqL~~~~~~l~v-------------~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
..+.+...++..++ .+-+.+......+..|.+|++|+..+|+++|+|||+...|.
T Consensus 1125 eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp HHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred HHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 11112222222111 11122345667778899999999999999999999987766
Q ss_pred HH
Q 008816 513 IE 514 (552)
Q Consensus 513 ~~ 514 (552)
..
T Consensus 1205 ~~ 1206 (1284)
T 3g5u_A 1205 ES 1206 (1284)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 70
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.98 E-value=1.3e-09 Score=120.00 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=77.3
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE---------EeeecC------------------
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM---------MAACDT------------------ 453 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl---------l~~~D~------------------ 453 (552)
.++.+++ .+.+|+ +++|+||||||||||++.|++.+.+..|.+. +.+.+.
T Consensus 36 ~~l~~vs-~i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 3678898 899999 9999999999999999999999888766630 111000
Q ss_pred ---C------cchHHHH---------HHHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChH
Q 008816 454 ---F------RSGAVEQ---------LRTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVII 513 (552)
Q Consensus 454 ---~------r~ga~eq---------L~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~ 513 (552)
. .....+. .....+.+++.... ........+..+.+|++|+..+|+++|+|||+...+..
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~ 192 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred hhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 0 0001111 11223344443211 11234556777899999999999999999999766654
Q ss_pred H---HHHHHHHH
Q 008816 514 E---YYLFLLHI 522 (552)
Q Consensus 514 ~---lm~eL~kl 522 (552)
. +++.|..+
T Consensus 193 ~~~~l~~~L~~l 204 (538)
T 1yqt_A 193 QRLNAARAIRRL 204 (538)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3 34444444
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.97 E-value=2.1e-10 Score=107.07 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=63.0
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHH------------HHHHHHhhCCceEEEeeecCCcchHHHHHHHH---HHHc
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLA------------KVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH---ARRL 469 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~------------kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~---~~~l 469 (552)
+++|.+++|+ +++|+|||||||||+++ .+.+++.++.+.+.+.+ ...+.+... ....
T Consensus 1 ~vsl~i~~ge--i~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 72 (171)
T 4gp7_A 1 SMKLTIPELS--LVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTG------AAFDVLHYIVSKRLQL 72 (171)
T ss_dssp CEEEEEESSE--EEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHH------HHHHHHHHHHHHHHHT
T ss_pred CccccCCCCE--EEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHH------HHHHHHHHHHHHHHhC
Confidence 4788899999 99999999999999999 66666665544322111 011111111 1123
Q ss_pred CCceeecC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 470 QVPIFEKG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 470 ~v~~~~~~-~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
+....... .........+.+|++++..+|+++++|+|....+.
T Consensus 73 g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~ 116 (171)
T 4gp7_A 73 GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQE 116 (171)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHH
Confidence 33332222 22233445578899999999999999999865443
No 72
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.97 E-value=9.8e-10 Score=122.65 Aligned_cols=105 Identities=19% Similarity=0.153 Sum_probs=70.8
Q ss_pred cccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE-----------EeeecC-------------------Cc---
Q 008816 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDT-------------------FR--- 455 (552)
Q Consensus 409 ~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl-----------l~~~D~-------------------~r--- 455 (552)
.+.+|+ +++|+||||+||||+++.|++++.++.|+|. +.+.+. +.
T Consensus 99 ~~~~Ge--i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (608)
T 3j16_B 99 TPRPGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNI 176 (608)
T ss_dssp CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTH
T ss_pred CCCCCC--EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhh
Confidence 467888 9999999999999999999999999888762 111110 00
Q ss_pred ----------c---------hHHHHHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 456 ----------S---------GAVEQLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 456 ----------~---------ga~eqL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
. ...+....+.+.+++..... .......+..+.+|++|+..+|+++|+|||+...+...
T Consensus 177 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~ 256 (608)
T 3j16_B 177 PRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQ 256 (608)
T ss_dssp HHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred hhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHH
Confidence 0 00012223334445443221 23456667778999999999999999999997766554
Q ss_pred H
Q 008816 515 Y 515 (552)
Q Consensus 515 l 515 (552)
.
T Consensus 257 ~ 257 (608)
T 3j16_B 257 R 257 (608)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.96 E-value=1.5e-09 Score=121.12 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=73.5
Q ss_pred ccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceE------EEeeecCC---cchHHHHH------------
Q 008816 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV------MMAACDTF---RSGAVEQL------------ 462 (552)
Q Consensus 404 ~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkV------ll~~~D~~---r~ga~eqL------------ 462 (552)
..++|.+.+|+ +++|+||||+|||||++.|++.+.+..|+| .++..+.. .....+.+
T Consensus 373 ~~~~~~v~~Ge--i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 450 (607)
T 3bk7_A 373 EVEPGEIRKGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNF 450 (607)
T ss_dssp EECCEEEETTC--EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHH
T ss_pred EecccccCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHH
Confidence 34445567899 999999999999999999999999887765 34444431 11111211
Q ss_pred --HHHHHHcCCceee--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 463 --RTHARRLQVPIFE--KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 463 --~~~~~~l~v~~~~--~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+.+.+++.-.. ........+..|.+|++|+..+++++|+|||+...|...
T Consensus 451 ~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 451 YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 1122233443111 122456677779999999999999999999997766544
No 74
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.95 E-value=2.6e-09 Score=107.15 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=74.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-CceEEEeeecCCcchHHHHHHHHHHHcCCceeec-CC
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK-GY 478 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~-~~ 478 (552)
.+|++++ +.+|+ +++|+|||||||||+++.|++++.+. .|+|.+.+.++.... ...+.++.+ ..
T Consensus 15 ~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----------~~~~~~v~q~~~ 80 (261)
T 2eyu_A 15 DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----------KHKKSIVNQREV 80 (261)
T ss_dssp THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----------CCSSSEEEEEEB
T ss_pred HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----------CCcceeeeHHHh
Confidence 3667777 67787 99999999999999999999999887 899998876642110 000111111 11
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEec
Q 008816 479 EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 479 ~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
+.++. ..+.+|++++..+||++|+|||. +.+.....+.. ....+.+.++.+.
T Consensus 81 gl~~~-~l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~----~~~g~~vl~t~H~ 132 (261)
T 2eyu_A 81 GEDTK-SFADALRAALREDPDVIFVGEMR---DLETVETALRA----AETGHLVFGTLHT 132 (261)
T ss_dssp TTTBS-CHHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEECC
T ss_pred CCCHH-HHHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH----HccCCEEEEEeCc
Confidence 11111 12678889988999999999998 44443332321 2235555555444
No 75
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.95 E-value=2.5e-09 Score=120.46 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=29.8
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHH
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL 432 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll 432 (552)
...+|++|+|.+++|+ +++|+||||||||||+
T Consensus 30 ~~~~L~~vsl~i~~Ge--~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGK--LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSTTCCSEEEEEETTS--EEEEECSTTSSHHHHH
T ss_pred CccceeccEEEECCCC--EEEEECCCCCCHHHHh
Confidence 4467999999999999 9999999999999997
No 76
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.94 E-value=1.8e-09 Score=118.92 Aligned_cols=110 Identities=17% Similarity=0.123 Sum_probs=73.2
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceE------EEeeecCCc---chHHHHHHH---------
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV------MMAACDTFR---SGAVEQLRT--------- 464 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkV------ll~~~D~~r---~ga~eqL~~--------- 464 (552)
|..++|.+..|+ +++|+|||||||||+++.|++.+.+..|+| .++..+... ....+.+..
T Consensus 302 l~~~~~~i~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~ 379 (538)
T 1yqt_A 302 LEVEPGEIKKGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSN 379 (538)
T ss_dssp EEECCEEEETTC--EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCH
T ss_pred EEeCccccCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHH
Confidence 334455567899 999999999999999999999998877654 445454321 111222211
Q ss_pred -----HHHHcCCcee--ecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 465 -----HARRLQVPIF--EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 465 -----~~~~l~v~~~--~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
+.+.+++.-. .........+..|.+|++|+..+|+++|+|||+...|...
T Consensus 380 ~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 380 FYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 1112233211 0122355567779999999999999999999997766543
No 77
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.93 E-value=2.3e-09 Score=119.69 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=73.2
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE---------EeeecCC------------------
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM---------MAACDTF------------------ 454 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl---------l~~~D~~------------------ 454 (552)
+|++++ .+.+|+ +++|+||||+||||+++.|++.+.++.|.+. +.+.+..
T Consensus 107 ~l~~vs-~i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 107 VLYRLP-IVKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp EEECCC-CCCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeCCCC-CCCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 678888 889999 9999999999999999999999988766631 1111100
Q ss_pred ---------cchHHHH---------HHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 455 ---------RSGAVEQ---------LRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 455 ---------r~ga~eq---------L~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.....+. .....+.+++.-... .......+..|.+|++|+..+|+++|+|||+...+...
T Consensus 184 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~ 263 (607)
T 3bk7_A 184 YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263 (607)
T ss_dssp CGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred hhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 0000111 112223334432111 12345566678999999999999999999997766544
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.91 E-value=1.8e-09 Score=125.75 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=43.7
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~ 449 (552)
.+|++++|.+..|+ +++|+||||+|||||++.|+|.+.+..|.|.+.
T Consensus 687 ~iL~dVSl~I~~Ge--ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 687 PQITDINFQCSLSS--RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp CSEEEEEEEEETTC--EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred eeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 47899999999999 999999999999999999999999998988774
No 79
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.91 E-value=1.2e-08 Score=102.91 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=70.3
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-CceEEEeeecCCcchHHHH---------------H
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQ---------------L 462 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-ggkVll~~~D~~r~ga~eq---------------L 462 (552)
...+|+++++.+.+|+ +++|+|+||+||||++..|++.+.+. |.+|++++.+.-....... +
T Consensus 21 g~~~Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l 98 (296)
T 1cr0_A 21 GCTGINDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSL 98 (296)
T ss_dssp SCTTHHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHH
T ss_pred CHHHHHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhcccc
Confidence 3556788888899999 99999999999999999999999887 5589888765421000000 0
Q ss_pred ----------HHHHHH----cCCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 463 ----------RTHARR----LQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 463 ----------~~~~~~----l~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
...... .++.+........+..+...+.++++..++++||||+|+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 99 KREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp HHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC--
T ss_pred ccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 000011 11222211123556665444445567889999999999974
No 80
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.89 E-value=2e-09 Score=111.73 Aligned_cols=109 Identities=24% Similarity=0.242 Sum_probs=69.4
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCC-----ceeec
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV-----PIFEK 476 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v-----~~~~~ 476 (552)
+++++++.+..|. +++|+|+|||||||+++.|++++.+.+++|.+.+.|+........+.....+++. .++..
T Consensus 44 ~l~~i~~~~~~g~--~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 44 LIDAVLPQTGRAI--RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIR 121 (337)
T ss_dssp HHHHHGGGCCCSE--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEE
T ss_pred HHHhCCcccCCCe--EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccc
Confidence 5667888888887 9999999999999999999999999999999999997532100000000011111 11111
Q ss_pred --CCCCCHHHH---HHHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 477 --GYEKDPAIV---AKEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 477 --~~~~dp~~i---ar~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
...-..... .++++......+++++||||||..+..
T Consensus 122 ~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~ 162 (337)
T 2qm8_A 122 PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE 162 (337)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH
T ss_pred cCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch
Confidence 111111122 234443344579999999999976543
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.85 E-value=8e-09 Score=120.34 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=79.6
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHH-Hh----hCCceEEEeeecC---C-cchH-----------HH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LL----QHKVSVMMAACDT---F-RSGA-----------VE 460 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~-l~----~~ggkVll~~~D~---~-r~ga-----------~e 460 (552)
.+|++++|.+.+|+ +++|+||||||||||++.|++- +. ....++.++..+. + .... .+
T Consensus 449 ~iL~~vsl~I~~Ge--~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~ 526 (986)
T 2iw3_A 449 ILLNKTQLRLKRAR--RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE 526 (986)
T ss_dssp EEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHH
T ss_pred EeEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHH
Confidence 47899999999999 9999999999999999999941 10 0112344443332 1 1111 12
Q ss_pred HHHHHHHHcCCc--eee-cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 461 QLRTHARRLQVP--IFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 461 qL~~~~~~l~v~--~~~-~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
......+.+++. ... ........+..|.+|++|+..+|+++|+|||+...+. .....|.+++
T Consensus 527 ~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~-~~~~~l~~~L 591 (986)
T 2iw3_A 527 AIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT-VNVAWLVNYL 591 (986)
T ss_dssp HHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH-HHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH-HHHHHHHHHH
Confidence 233445566763 111 2234667778899999999999999999999966554 4444444443
No 82
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.84 E-value=3.1e-09 Score=117.06 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=66.9
Q ss_pred cCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE-----------EeeecCC-------------------------
Q 008816 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTF------------------------- 454 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl-----------l~~~D~~------------------------- 454 (552)
.+|+ +++|+|||||||||++++|++.+.++.|.|. +.+.+..
T Consensus 23 ~~Ge--i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 23 KNNT--ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CTTE--EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 4677 9999999999999999999999988877661 1111110
Q ss_pred -cch-HHH---------HHHHHHHHcCCceeec--CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 455 -RSG-AVE---------QLRTHARRLQVPIFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 455 -r~g-a~e---------qL~~~~~~l~v~~~~~--~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
..+ ..+ ......+.+++..... .......+..+.+|++|+..+|+++|+|||+...+...
T Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~ 173 (538)
T 3ozx_A 101 FLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE 173 (538)
T ss_dssp TCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred hccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 000 001 0112233344432211 12345566778999999999999999999997766544
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.82 E-value=1.6e-09 Score=112.22 Aligned_cols=92 Identities=13% Similarity=0.234 Sum_probs=68.3
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCC
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 481 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~d 481 (552)
+++++++.+..|+ +++|+|||||||||+++.|++++.+..|.|.+.+.+.+.... +.+ .+.++..
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~------~~~--~i~~~~g----- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKH------HKN--YTQLFFG----- 224 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSS------CSS--EEEEECB-----
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccccc------chh--EEEEEeC-----
Confidence 3456777888898 999999999999999999999999999999998765433210 001 1222221
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCC
Q 008816 482 PAIVAKEAIQEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 482 p~~iar~aIa~a~~~~~DvVIIDtpGr 508 (552)
.....+.+|++|+..+||++|+|||..
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 112346788899999999999999985
No 84
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.80 E-value=1.5e-08 Score=98.21 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=30.9
Q ss_pred cccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-hCCceEEEeeec
Q 008816 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACD 452 (552)
Q Consensus 409 ~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-~~ggkVll~~~D 452 (552)
.+++|+ +++|+|||||||||+++.|++... ..+..+.++..+
T Consensus 26 gi~~G~--~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 26 GFPEGT--TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTC--EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 467888 999999999999999999995333 334444444443
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.74 E-value=7.2e-08 Score=89.78 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=66.5
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-hCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 488 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~ 488 (552)
+..|+ .++|+||||+||||++..|++.+. ..|..+.++.+.. ..+.+........ . . .
T Consensus 35 ~~~g~--~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~--------~-~------~ 93 (180)
T 3ec2_A 35 PEEGK--GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD----LIFRLKHLMDEGK--------D-T------K 93 (180)
T ss_dssp GGGCC--EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH----HHHHHHHHHHHTC--------C-S------H
T ss_pred ccCCC--EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH----HHHHHHHHhcCch--------H-H------H
Confidence 45566 999999999999999999999987 4555666654332 1222221111100 0 0 1
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhc-cccEEEEEEecCcc
Q 008816 489 AIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTV-CEHFVNIITFRGMW 541 (552)
Q Consensus 489 aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~-~~~~~~ii~~~~~f 541 (552)
.+.. ..+++++|+|+|+....+......|..++.... ....+.++++...-
T Consensus 94 ~~~~--~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 94 FLKT--VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHH--HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HHHH--hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 1221 347999999999976666666666666665444 33445555555443
No 86
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.70 E-value=3.1e-08 Score=94.83 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=27.0
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
+++|+ +++|+|||||||||++..|++.+.+
T Consensus 22 i~~G~--~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQA--ITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSE--EEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCc--EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 56788 9999999999999999999997665
No 87
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.67 E-value=1.3e-07 Score=106.63 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=30.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA 436 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA 436 (552)
.+|++++|.+++|+ +++|+|||||||||+++.|.
T Consensus 336 ~~L~~vsl~I~~Ge--~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLGT--FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETTS--EEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCCC--EEEEEeeCCCCHHHHHHHHH
Confidence 46899999999999 99999999999999997654
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.67 E-value=8.7e-08 Score=87.83 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=62.9
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHH
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa 491 (552)
.|+ .++|+||||+||||+++.|++.+.+.|.++.++....+...
T Consensus 35 ~g~--~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------------------------- 78 (149)
T 2kjq_A 35 HGQ--FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------------------------- 78 (149)
T ss_dssp CCS--EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------------------------------
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------------------------------
Confidence 566 89999999999999999999998877666655544322111
Q ss_pred HHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccc-cE-EEEEEecCc--c-cHHHHHHHh
Q 008816 492 EATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCE-HF-VNIITFRGM--W-SFDCLKRKE 550 (552)
Q Consensus 492 ~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~-~~-~~ii~~~~~--f-~~~~l~~~~ 550 (552)
+...+++++|||+++...... .+.|..++...... .. +.++..... | ....|++|.
T Consensus 79 -~~~~~~~lLilDE~~~~~~~~--~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl 139 (149)
T 2kjq_A 79 -DAAFEAEYLAVDQVEKLGNEE--QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRM 139 (149)
T ss_dssp -GGGGGCSEEEEESTTCCCSHH--HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHG
T ss_pred -HHHhCCCEEEEeCccccChHH--HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHH
Confidence 113468999999999755433 44455554433322 22 444444332 2 116677665
No 89
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.65 E-value=2.1e-07 Score=88.47 Aligned_cols=93 Identities=17% Similarity=0.056 Sum_probs=57.3
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCC---------ceeecCCCC
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV---------PIFEKGYEK 480 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v---------~~~~~~~~~ 480 (552)
++.|+ +++|+|+||+||||++..|++ ..+++|++++.+.... .+++..+.+.+++ .+.......
T Consensus 17 i~~G~--~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (220)
T 2cvh_A 17 FAPGV--LTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFS--PERLVQMAETRGLNPEEALSRFILFTPSDFK 89 (220)
T ss_dssp BCTTS--EEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCC--HHHHHHHHHTTTCCHHHHHHHEEEECCTTTS
T ss_pred CcCCE--EEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCC--HHHHHHHHHhcCCChHHHhhcEEEEecCCHH
Confidence 56788 999999999999999999998 5678888888765111 2333334333333 111111111
Q ss_pred CHHHHHHHHHHHHHhC-CCCEEEEeCCCCCCC
Q 008816 481 DPAIVAKEAIQEATRN-GSDVVLVDTAGRMQV 511 (552)
Q Consensus 481 dp~~iar~aIa~a~~~-~~DvVIIDtpGr~~~ 511 (552)
..... .+..+++.. ++++||||+|+...+
T Consensus 90 ~~~~~--~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 90 EQRRV--IGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHH--HHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHHH--HHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 11112 223334444 599999999997754
No 90
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.64 E-value=1e-07 Score=99.35 Aligned_cols=98 Identities=26% Similarity=0.269 Sum_probs=60.7
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc---hHHHHHHH----HHHHcCCceeecCCCCCH---
Q 008816 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---GAVEQLRT----HARRLQVPIFEKGYEKDP--- 482 (552)
Q Consensus 413 g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~---ga~eqL~~----~~~~l~v~~~~~~~~~dp--- 482 (552)
+.+.+|+|+|++||||||++..|+..+...|.+|.++++|+... +++.+.+. +...-++.+.........
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 34569999999999999999999999998999999999996533 22221111 111113333322222222
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 483 AIVAKEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 483 ~~iar~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
....+.++......+++++||||||..+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~ 184 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ 184 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc
Confidence 2233555655556889999999999654
No 91
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.63 E-value=3.3e-08 Score=103.52 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=65.5
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-CceEEEeeecCCcchHHHHHHHHHHHcCCceeec-CCCCCHHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK-GYEKDPAIVAK 487 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~-~~~~dp~~iar 487 (552)
..++. +++|+||||||||||++.|++++.+. ++.|+.+ .|+..... .....++.+ ....+. ....
T Consensus 120 ~~~~g--~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~-ed~~e~~~---------~~~~~~v~q~~~~~~~-~~~~ 186 (356)
T 3jvv_A 120 DVPRG--LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI-EDPIEFVH---------ESKKCLVNQREVHRDT-LGFS 186 (356)
T ss_dssp HCSSE--EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCC---------CCSSSEEEEEEBTTTB-SCHH
T ss_pred hCCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-cCcHHhhh---------hccccceeeeeecccc-CCHH
Confidence 34555 99999999999999999999999887 6666544 44321100 000111111 111111 1123
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEec
Q 008816 488 EAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 488 ~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
.+|++|+..+||+||+|||. +...++.+.++ ....+.+.++.++
T Consensus 187 ~~La~aL~~~PdvillDEp~----d~e~~~~~~~~---~~~G~~vl~t~H~ 230 (356)
T 3jvv_A 187 EALRSALREDPDIILVGEMR----DLETIRLALTA---AETGHLVFGTLHT 230 (356)
T ss_dssp HHHHHHTTSCCSEEEESCCC----SHHHHHHHHHH---HHTTCEEEEEESC
T ss_pred HHHHHHhhhCcCEEecCCCC----CHHHHHHHHHH---HhcCCEEEEEEcc
Confidence 58899999999999999997 33444443333 2335665555444
No 92
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.61 E-value=8.9e-08 Score=99.27 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=41.5
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
++++....+. +|+|+|++|+||||++..|++.+.+.+++|.+++.|+++.
T Consensus 48 ~l~~~~~~~~--~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 48 AIMPYCGNTL--RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 97 (341)
T ss_dssp HHGGGCSCSE--EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred hCCcccCCCE--EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence 3444444454 9999999999999999999999999999999999998754
No 93
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.60 E-value=4.6e-07 Score=85.36 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=58.8
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHH--HcCCceeecCCCCCHHHHHHHHHHH
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR--RLQVPIFEKGYEKDPAIVAKEAIQE 492 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~--~l~v~~~~~~~~~dp~~iar~aIa~ 492 (552)
++|+|+|. .|+||||++..||..+...|.+|+++++|+..... .|.. ..+++++.... ......+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~-----~~~~~~~~~~~~~~~~~-----~~l~~~l~~ 71 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT-----NWSKAGKAAFDVFTAAS-----EKDVYGIRK 71 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH-----HHHTTSCCSSEEEECCS-----HHHHHTHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH-----HHHhcCCCCCcEEecCc-----HHHHHHHHH
Confidence 58889855 89999999999999999999999999999754321 2222 22345544321 223344444
Q ss_pred HHhCCCCEEEEeCCCCC
Q 008816 493 ATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 493 a~~~~~DvVIIDtpGr~ 509 (552)
+..+||+||||+|+..
T Consensus 72 -l~~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 72 -DLADYDFAIVDGAGSL 87 (206)
T ss_dssp -HTTTSSEEEEECCSSS
T ss_pred -hcCCCCEEEEECCCCC
Confidence 3567999999999866
No 94
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.59 E-value=5.4e-08 Score=102.30 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=58.5
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-CceEEEeeecCCcchHHHHHHHHHHHcCCceeec-CCCCCHHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK-GYEKDPAIVAK 487 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~-~~~~dp~~iar 487 (552)
+.+|+ +++|+|||||||||+++.|++++.+. .++|.+++.+.- . .....+.++.+ ..+.++..+ .
T Consensus 133 ~~~g~--~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---------~~~~~~~~v~Q~~~g~~~~~~-~ 199 (372)
T 2ewv_A 133 HRKMG--LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---------VFKHKKSIVNQREVGEDTKSF-A 199 (372)
T ss_dssp TSSSE--EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---------CCCCSSSEEEEEEBTTTBSCS-H
T ss_pred hcCCC--EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---------hhccCceEEEeeecCCCHHHH-H
Confidence 35666 99999999999999999999999987 789987765431 0 00112222222 111122111 4
Q ss_pred HHHHHHHhCCCCEEEEeCCC
Q 008816 488 EAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 488 ~aIa~a~~~~~DvVIIDtpG 507 (552)
.+|+.++..+||+||+|||.
T Consensus 200 ~~l~~~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMR 219 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCC
T ss_pred HHHHHHhhhCcCEEEECCCC
Confidence 67888888999999999997
No 95
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.59 E-value=4.1e-08 Score=92.70 Aligned_cols=121 Identities=17% Similarity=0.078 Sum_probs=64.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCc---------ee----------ecC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP---------IF----------EKG 477 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~---------~~----------~~~ 477 (552)
.++|+|||||||||++++|++.+. |.+.+.+..... ... ..+..++. ++ ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~-~~~---~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVR-DPE---TKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC----------CCEEEEEETTCCEEEEEETTCCCSSEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhc-ccc---ccceeEEEeecCcHHHHHHHhhcCCccccccc
Confidence 689999999999999999999885 222222221000 000 01111110 00 000
Q ss_pred CC--CCHHHHHHHHHHHH-----HhCCCCEEEEeC--CCCCCChHHHHHHHHHHhhhhccccEEEEEEe--cCcccHHHH
Q 008816 478 YE--KDPAIVAKEAIQEA-----TRNGSDVVLVDT--AGRMQVIIEYYLFLLHIYLHTVCEHFVNIITF--RGMWSFDCL 546 (552)
Q Consensus 478 ~~--~dp~~iar~aIa~a-----~~~~~DvVIIDt--pGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~--~~~f~~~~l 546 (552)
+. ....+..+.++++| +..+++++|+|| |.. ..+....+.+.++... ....+.++.+ ...-....+
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~-~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME-LFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG-GGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHH
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcc-cCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHH
Confidence 11 12234456778885 889999999999 654 3445556666665543 2222334442 234444445
Q ss_pred HHH
Q 008816 547 KRK 549 (552)
Q Consensus 547 ~~~ 549 (552)
+++
T Consensus 150 ~~r 152 (178)
T 1ye8_A 150 RRL 152 (178)
T ss_dssp HTC
T ss_pred Hhc
Confidence 544
No 96
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=98.57 E-value=1.9e-07 Score=94.75 Aligned_cols=97 Identities=22% Similarity=0.318 Sum_probs=64.9
Q ss_pred CcEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHH--------HH-HHH------------cCC
Q 008816 414 KPYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR--------TH-ARR------------LQV 471 (552)
Q Consensus 414 ~p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~--------~~-~~~------------l~v 471 (552)
.+++|+|+|+ .|+||||++..||..+...|.+|+++++|..++.....+. .+ ... -++
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 4559999987 8999999999999999999999999999998664433221 11 000 122
Q ss_pred ceeecCC-CCCHHHHH-----HHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 472 PIFEKGY-EKDPAIVA-----KEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 472 ~~~~~~~-~~dp~~ia-----r~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
.++..+. ..+|.++. ...|.. +...||+||||||+....
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~~-l~~~yD~VIIDtpp~~~~ 215 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVNW-ASKNYDLVLIDTPPILAV 215 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHH-HHHHCSEEEEECCCTTTC
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHHH-HHhCCCEEEEcCCCCcch
Confidence 3333222 23555443 233433 456899999999987654
No 97
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.56 E-value=2.7e-07 Score=101.05 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=46.8
Q ss_pred cccccccccc-cccCCCcEEEEEEcCCCCChhHHHHH--HHHHHhhCCceEEEeeecC
Q 008816 399 SIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAK--VAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 399 ~~diL~di~~-~~~~g~p~vI~lvG~nGvGKTTll~k--LA~~l~~~ggkVll~~~D~ 453 (552)
.+.+|+++++ .+++|+ +++|+|||||||||++.. +++.+.+..+.|.+.+.+.
T Consensus 24 g~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (525)
T ss_dssp CCTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CchhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 3568999999 999999 999999999999999999 6788887888888877663
No 98
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.55 E-value=5.6e-09 Score=112.94 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=38.9
Q ss_pred cccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCc-e-EEEee
Q 008816 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-S-VMMAA 450 (552)
Q Consensus 405 di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~gg-k-Vll~~ 450 (552)
+++|.+..|+ +++|+|||||||||+++.|++++.+.+| + |.+.+
T Consensus 130 ~vsl~i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 130 KIRMSNFEGP--RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp HHHHHSSSCC--CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred cCceEeCCCC--EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 4677888999 9999999999999999999999999888 8 66643
No 99
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.54 E-value=6.6e-07 Score=93.19 Aligned_cols=148 Identities=15% Similarity=0.175 Sum_probs=82.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccc-cccccCCCcEEEEEEcCCCC
Q 008816 348 TKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDV-HAAKEQRKPYVVVFVGVNGV 426 (552)
Q Consensus 348 ~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di-~~~~~~g~p~vI~lvG~nGv 426 (552)
.++++..-+.++++.+...+.. +.|.+........ ... ..+. .....|+.+ .+.++.|+ ++.|+||||+
T Consensus 73 ~~~~s~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~--~~~-~~is--TG~~~LD~lL~ggi~~G~--i~~I~G~~Gs 142 (349)
T 1pzn_A 73 VAGISEGTALKIIQAARKAANL---GTFMRADEYLKKR--ATI-GRIS--TGSKSLDKLLGGGIETQA--ITEVFGEFGS 142 (349)
T ss_dssp HHCCCHHHHHHHHHHHHHHCST---TSCEEHHHHHHHH--HTC-CEEC--CSCHHHHHHHTSSEESSE--EEEEEESTTS
T ss_pred hcCCCHHHHHHHHHHHhhhccc---cCCccHHHHHhhh--ccC-Ceec--CCCHHHHHHhcCCCCCCe--EEEEECCCCC
Confidence 4778888888888887765421 2344433322110 001 1111 123334443 46678888 9999999999
Q ss_pred ChhHHHHHHHHHHh--hC----Cce-EEEeeecCCcchHHHHHHHHHHHcCCce--------eecCCCCCHHHH-HHHHH
Q 008816 427 GKSTNLAKVAYWLL--QH----KVS-VMMAACDTFRSGAVEQLRTHARRLQVPI--------FEKGYEKDPAIV-AKEAI 490 (552)
Q Consensus 427 GKTTll~kLA~~l~--~~----ggk-Vll~~~D~~r~ga~eqL~~~~~~l~v~~--------~~~~~~~dp~~i-ar~aI 490 (552)
||||++..|++.+. +. +++ |++.+.+.++ .+++..+++.+++.. +... .++... ....+
T Consensus 143 GKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~---~~~i~~i~q~~~~~~~~v~~ni~~~~~--~~~~~~~~~l~~ 217 (349)
T 1pzn_A 143 GKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPDEVLKHIYVARA--FNSNHQMLLVQQ 217 (349)
T ss_dssp SHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC---HHHHHHHHHTTTCCHHHHGGGEEEEEC--CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC---HHHHHHHHHHcCCCHHHHhhCEEEEec--CChHHHHHHHHH
Confidence 99999999999873 22 368 4454445543 244545555443321 1111 122111 11112
Q ss_pred HHHHh-------CCCCEEEEeCCCCCC
Q 008816 491 QEATR-------NGSDVVLVDTAGRMQ 510 (552)
Q Consensus 491 a~a~~-------~~~DvVIIDtpGr~~ 510 (552)
..++. .++++||||+|+...
T Consensus 218 ~~~~~~~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 218 AEDKIKELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp HHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred HHHHHHHhccccCCCCEEEEeCchHhh
Confidence 22222 689999999998764
No 100
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.53 E-value=4.3e-09 Score=102.11 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=31.5
Q ss_pred cCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE
Q 008816 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll 448 (552)
.+|+ +++|+||||||||||++.|+++ .+..|.|..
T Consensus 20 ~~Ge--~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~ 54 (208)
T 3b85_A 20 DTNT--IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR 54 (208)
T ss_dssp HHCS--EEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhcC-CCcCCeeee
Confidence 5788 9999999999999999999999 888888743
No 101
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=98.52 E-value=1.5e-07 Score=94.53 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=64.7
Q ss_pred CcEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHH--------HH-------HHH------cCC
Q 008816 414 KPYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR--------TH-------ARR------LQV 471 (552)
Q Consensus 414 ~p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~--------~~-------~~~------l~v 471 (552)
.+++|+|+|+ +|+||||++..||..+...|.+|+++++|..++.....+. .+ .+. -++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 3569999987 8999999999999999999999999999987654332211 00 000 123
Q ss_pred ceeecCC-CCCHHHHH-----HHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 472 PIFEKGY-EKDPAIVA-----KEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 472 ~~~~~~~-~~dp~~ia-----r~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
.++..+. ..+|.++. ...+.. +...||+||||||+....
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll~~-l~~~yD~VIIDtpp~~~~ 205 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLYDT-LLMNYNFVIIDTPPVNTV 205 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHH-HHHHCSEEEEECCCTTTC
T ss_pred EEEECCCCCCCHHHHhChHHHHHHHHH-HHhCCCEEEEeCCCCchH
Confidence 3333222 24555442 334443 356899999999987543
No 102
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.48 E-value=1.2e-06 Score=84.60 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=37.5
Q ss_pred cccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 409 ~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
-+++|+ +++|+|+||+||||++..++..+.+.+++|++++.+.
T Consensus 19 Gl~~G~--~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERN--VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTC--EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCc--EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 356788 9999999999999999999887777888999988775
No 103
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.48 E-value=4.8e-09 Score=111.91 Aligned_cols=131 Identities=12% Similarity=0.027 Sum_probs=73.2
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC-----------C---------cch-HHHHHHHHHHHcCCce-
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------F---------RSG-AVEQLRTHARRLQVPI- 473 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~-----------~---------r~g-a~eqL~~~~~~l~v~~- 473 (552)
.+++|+|+|||||||+++.|++.+.+..|.|.+.+.++ + ..+ ....+..+.+.+++.-
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 39999999999999999999998887766654433221 0 011 0111233334433321
Q ss_pred -----eecCCCCCHHHHHHHHHHHHHhC----------CCCEEEEeCCCCCCCh---HHHHHHHHHHhhh---h--cccc
Q 008816 474 -----FEKGYEKDPAIVAKEAIQEATRN----------GSDVVLVDTAGRMQVI---IEYYLFLLHIYLH---T--VCEH 530 (552)
Q Consensus 474 -----~~~~~~~dp~~iar~aIa~a~~~----------~~DvVIIDtpGr~~~~---~~lm~eL~kl~~~---~--~~~~ 530 (552)
+..+.. ...+.+|++++.. ++|++++|+|+...+. ..+++.|..+... . ....
T Consensus 150 ~~~~~lS~G~~----~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~ 225 (413)
T 1tq4_A 150 DFFIIISATRF----KKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEP 225 (413)
T ss_dssp SEEEEEESSCC----CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CCeEEeCCCCc----cHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 111110 2334567777777 8999999999876544 3345555554311 1 1112
Q ss_pred EEEEEEe--cCcccHHHHHHHh
Q 008816 531 FVNIITF--RGMWSFDCLKRKE 550 (552)
Q Consensus 531 ~~~ii~~--~~~f~~~~l~~~~ 550 (552)
.+.+++. ..-++++.||++.
T Consensus 226 ~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 226 PIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp CEEECCTTCTTSTTHHHHHHHH
T ss_pred cEEEEecCcCCccCHHHHHHHH
Confidence 2233332 3345688888764
No 104
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=98.47 E-value=2.5e-07 Score=94.23 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=64.5
Q ss_pred CcEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHH--------HH-------HHH------cCC
Q 008816 414 KPYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR--------TH-------ARR------LQV 471 (552)
Q Consensus 414 ~p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~--------~~-------~~~------l~v 471 (552)
.+++|+|+|+ .|+||||++..||..+...|.+|+++++|..++.....+. .+ .+. -++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 3459999998 7999999999999999999999999999997654433221 00 000 123
Q ss_pred ceeecC-CCCCHHHHH-----HHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 472 PIFEKG-YEKDPAIVA-----KEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 472 ~~~~~~-~~~dp~~ia-----r~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
.++..+ ...++.++. ...|.. +...||+||||||+....
T Consensus 183 ~vl~~g~~~~~~~ell~~~~l~~ll~~-l~~~yD~VIIDtpp~~~~ 227 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRDRMRQLLEW-ANDHYDLVIVDTPPMLAV 227 (299)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHH-HHHHCSEEEEECCCTTTC
T ss_pred EEEECCCCCCCHHHHhCHHHHHHHHHH-HHhCCCEEEEcCCCCchh
Confidence 333322 223454432 333443 357899999999987653
No 105
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.46 E-value=4e-08 Score=91.30 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=43.3
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
++++++|.+.+|+ +++|+|||||||||+++.|++.+ +..|.|.+.+.++
T Consensus 22 ~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 22 AEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 5667889999999 99999999999999999999999 8888888766554
No 106
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.45 E-value=3.8e-07 Score=105.11 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=33.4
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHH-HHHHHh
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK-VAYWLL 440 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~k-LA~~l~ 440 (552)
.|++++|.++.|+ +++|+|+||||||||++. |++.+.
T Consensus 512 ~L~~vsl~i~~Ge--iv~I~G~nGSGKSTLl~~~L~g~l~ 549 (842)
T 2vf7_A 512 NLDNLDVRFPLGV--MTSVTGVSGSGKSTLVSQALVDALA 549 (842)
T ss_dssp TEEEEEEEEESSS--EEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred ccccceEEEcCCC--EEEEEcCCCcCHHHHHHHHHHHHHH
Confidence 5899999999999 999999999999999996 776653
No 107
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.45 E-value=4.4e-07 Score=95.51 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=32.6
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
+.+++++++.+.+| +++|+|+||+||||++..|++.+.
T Consensus 48 f~~l~~v~l~~~~G---~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 48 LATITQLELELGGG---FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp ETTEEEEEEECCSS---EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ccceeeEEEecCCC---cEEEECCCCCCHHHHHHHHHHHhC
Confidence 34678889888776 899999999999999999988764
No 108
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=98.44 E-value=1.5e-06 Score=85.37 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=36.2
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
++|+|++. .|+||||++..||..+...|.+|+++++|+...
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 44 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMA 44 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 47888755 899999999999999999999999999998643
No 109
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=98.43 E-value=3.7e-06 Score=84.94 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=38.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
.+++|+|+|..|+||||++..||..+...|.+|+++++|+..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 456999999999999999999999999999999999999864
No 110
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=98.42 E-value=7.8e-07 Score=88.14 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=38.5
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchH
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA 458 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga 458 (552)
+++|+|++. .|+||||++..||..+...|.+|+++++|+.....
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l 62 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSI 62 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCH
Confidence 348888865 89999999999999999999999999999976543
No 111
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.42 E-value=1.2e-06 Score=95.72 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=65.8
Q ss_pred cccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee-ecCCcchHHHHHHHHHHHcCCc----------eee--
Q 008816 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA-CDTFRSGAVEQLRTHARRLQVP----------IFE-- 475 (552)
Q Consensus 409 ~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~-~D~~r~ga~eqL~~~~~~l~v~----------~~~-- 475 (552)
.+.+|+ +++|+|+||+||||++..|++.+.+.|.+++++. .+. ..++...+..+++. .+.
T Consensus 277 ~i~~G~--i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-----~~~l~~~~~~~g~~~~~~~~~g~~~~~~~ 349 (525)
T 1tf7_A 277 GFFKDS--IILATGATGTGKTLLVSRFVENACANKERAILFAYEES-----RAQLLRNAYSWGMDFEEMERQNLLKIVCA 349 (525)
T ss_dssp SEESSC--EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-----HHHHHHHHHTTSCCHHHHHHTTSEEECCC
T ss_pred CCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-----HHHHHHHHHHcCCCHHHHHhCCCEEEEEe
Confidence 457888 9999999999999999999999888877765443 333 23444444434332 110
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 476 ~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
...........+.++++++..+|++||+| |...
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~ 382 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSA 382 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHH
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHH
Confidence 01223566777889999999999999999 8653
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.41 E-value=1.9e-06 Score=86.05 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=34.4
Q ss_pred cccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC----------CceEEEeeecC
Q 008816 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----------KVSVMMAACDT 453 (552)
Q Consensus 409 ~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~----------ggkVll~~~D~ 453 (552)
-++.|+ +++|+|+||+||||++..|++.+... +++|++++...
T Consensus 26 gl~~G~--i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 26 NMVAGT--VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TEETTS--EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CccCCC--EEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 356888 99999999999999999999877642 46777766543
No 113
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.41 E-value=4.9e-08 Score=102.16 Aligned_cols=96 Identities=15% Similarity=0.206 Sum_probs=66.0
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceee-cCCCC
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE-KGYEK 480 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~-~~~~~ 480 (552)
+++++++.+..|+ +++|+|||||||||+++.|++++.+..|.|.+.+.+.++... +.+. +.++. +....
T Consensus 164 ~~~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~------~~~~--v~~v~~q~~~~ 233 (361)
T 2gza_A 164 YMSFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPD------HPNH--VHLFYPSEAKE 233 (361)
T ss_dssp HHHHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTT------CSSE--EEEECC-----
T ss_pred HHHHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccc------cCCE--EEEeecCcccc
Confidence 4567888899999 999999999999999999999999999999987654333210 0111 22221 11000
Q ss_pred --CHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 481 --DPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 481 --dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
.+....+..|+.++...+|.++++++.
T Consensus 234 ~~~~~~t~~~~i~~~l~~~pd~~l~~e~r 262 (361)
T 2gza_A 234 EENAPVTAATLLRSCLRMKPTRILLAELR 262 (361)
T ss_dssp -----CCHHHHHHHHTTSCCSEEEESCCC
T ss_pred ccccccCHHHHHHHHHhcCCCEEEEcCch
Confidence 011224677888888899999999985
No 114
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=98.39 E-value=1.1e-06 Score=85.04 Aligned_cols=40 Identities=28% Similarity=0.262 Sum_probs=36.8
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhhC-CceEEEeeecCC
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQH-KVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~~-ggkVll~~~D~~ 454 (552)
+++|+|++. .|+||||++..||..+... |.+|+++++|+.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 459999976 8999999999999999998 999999999986
No 115
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=98.38 E-value=1.7e-06 Score=85.37 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=37.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
++|+|.|..|+||||++..||..+...|.+|+++++|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~ 42 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCC
Confidence 58888999999999999999999999999999999998654
No 116
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=98.38 E-value=1.3e-06 Score=85.48 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=37.0
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
++|+|+|. .|+||||++..||..+...|.+|+++++|+...
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 44 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLR 44 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 58999876 899999999999999999999999999998543
No 117
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.38 E-value=1.8e-06 Score=83.28 Aligned_cols=97 Identities=16% Similarity=0.083 Sum_probs=56.1
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHH--hh----CCceEEEeeecC-CcchHHHHHHHHHHHcCCcee------ec
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQ----HKVSVMMAACDT-FRSGAVEQLRTHARRLQVPIF------EK 476 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l--~~----~ggkVll~~~D~-~r~ga~eqL~~~~~~l~v~~~------~~ 476 (552)
++.|+ +++|+||||+||||++..|++.. .+ .++.+++++... +. .+++..+.+.+++... ..
T Consensus 21 i~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~ 95 (243)
T 1n0w_A 21 IETGS--ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFR---PERLLAVAERYGLSGSDVLDNVAY 95 (243)
T ss_dssp EETTS--EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---HHHHHHHHHHTTCCHHHHHHTEEE
T ss_pred CcCCe--EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcC---HHHHHHHHHHcCCCHHHHhhCeEE
Confidence 46788 99999999999999999999853 22 245555555443 22 2334444444443320 00
Q ss_pred CCCCCHHHH---HHHHHHHHHhCCCCEEEEeCCCCCCC
Q 008816 477 GYEKDPAIV---AKEAIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 477 ~~~~dp~~i---ar~aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
....+.... ...........++++|+||+++...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 96 ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 011222222 11122233346899999999986543
No 118
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.38 E-value=1.1e-07 Score=97.64 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=36.3
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCc--eEEEeeecCC
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV--SVMMAACDTF 454 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~gg--kVll~~~D~~ 454 (552)
+..|. +|+|+|||||||||+++.|++.+.+..| +|.++..|.|
T Consensus 87 ~~~g~--ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPF--IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCE--EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCE--EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 34555 9999999999999999999999988643 6888888865
No 119
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=98.38 E-value=1.6e-06 Score=85.68 Aligned_cols=42 Identities=33% Similarity=0.455 Sum_probs=37.3
Q ss_pred CcEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 414 KPYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 414 ~p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
.+++|+|++. .|+||||++..||..+. .|.+|+++++|+...
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~ 68 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQAS 68 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCC
Confidence 4569999866 89999999999999999 899999999998653
No 120
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=98.38 E-value=6.3e-07 Score=86.59 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=35.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
.|+|.|..|+||||++..||..+...|.+|+++++|+.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36678999999999999999999999999999999985
No 121
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.33 E-value=2.2e-07 Score=90.06 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=29.3
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll 448 (552)
-|++|+|.+++|+ +++|+|||||||||+++.|++++ + |.|.+
T Consensus 12 ~l~~isl~i~~G~--~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~ 53 (218)
T 1z6g_A 12 SGLVPRGSMNNIY--PLVICGPSGVGKGTLIKKLLNEF-P--NYFYF 53 (218)
T ss_dssp ----------CCC--CEEEECSTTSSHHHHHHHHHHHS-T--TTEEE
T ss_pred cccCCceecCCCC--EEEEECCCCCCHHHHHHHHHhhC-C--CcEEE
Confidence 4678999999999 99999999999999999999988 4 66776
No 122
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.31 E-value=3.7e-06 Score=97.67 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=27.7
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL 432 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll 432 (552)
.|++++|.++.|+ +++|+||||||||||+
T Consensus 599 ~Lk~Vsl~I~~Ge--iv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 599 NLKNIDVEIPLGV--FVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TCCSEEEEEESSS--EEEEECSTTSSHHHHH
T ss_pred cccccceEEcCCc--EEEEEccCCCChhhhH
Confidence 5889999999999 9999999999999997
No 123
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.31 E-value=6.6e-07 Score=104.00 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=32.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHH
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
-++++++|.+..|+ +++|+||||+||||+++.|+..
T Consensus 661 ~V~ndvsl~~~~g~--i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 661 YVPNNTDLSEDSER--VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEECTTSCC--EEEEESCCCHHHHHHHHHHHHH
T ss_pred eecccccccCCCCe--EEEEECCCCCchHHHHHHHHHH
Confidence 46778999988888 9999999999999999999864
No 124
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=98.30 E-value=2.5e-06 Score=82.30 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=36.6
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
++|+|+|. .|+||||++..||..+...|.+|+++++|+...
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 44 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMA 44 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSC
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCC
Confidence 48888866 899999999999999999999999999998643
No 125
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.30 E-value=7.4e-05 Score=80.14 Aligned_cols=78 Identities=12% Similarity=0.201 Sum_probs=54.1
Q ss_pred CCccchhHHHHHHHHHHHHHHhCCC-------CcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-CCc
Q 008816 373 ASFTRISSIVQAAMEEALVRILTPR-------RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKV 444 (552)
Q Consensus 373 ~~f~~~~~~v~~~l~~~L~~il~~~-------~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-~gg 444 (552)
..|.++.+.+...+ +.+.+..... ..+..|+++..-+.+|. +++|+|++|+||||++..|+..+.. .|.
T Consensus 157 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~tG~~~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~~~~g~ 233 (454)
T 2r6a_A 157 GAFKNIKDILVQTY-DNIEMLHNRDGEITGIPTGFTELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVATKTNE 233 (454)
T ss_dssp CCCCCHHHHHHHHH-HHHHHHHSCCCCCCSBCCSCHHHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHHHHSSC
T ss_pred ccCccHHHHHHHHH-HHHHHHHhCCCCCCCCCCCcHHHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHhCCC
Confidence 44555555554443 3344433211 22345666665678888 9999999999999999999998876 567
Q ss_pred eEEEeeecC
Q 008816 445 SVMMAACDT 453 (552)
Q Consensus 445 kVll~~~D~ 453 (552)
+|++++.+.
T Consensus 234 ~Vl~~s~E~ 242 (454)
T 2r6a_A 234 NVAIFSLEM 242 (454)
T ss_dssp CEEEEESSS
T ss_pred cEEEEECCC
Confidence 899998775
No 126
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.29 E-value=7.8e-07 Score=92.57 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=37.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
..+|+|+|++||||||++..|++.+.+.+++|.+++.|++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 349999999999999999999999999999999999998754
No 127
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.29 E-value=1.9e-07 Score=109.91 Aligned_cols=99 Identities=24% Similarity=0.202 Sum_probs=58.6
Q ss_pred cccccccccccC-------CCcEEEEEEcCCCCChhHHHHHHHHHHhh---CCceEE-----EeeecC--CcchHHHHHH
Q 008816 401 DILRDVHAAKEQ-------RKPYVVVFVGVNGVGKSTNLAKVAYWLLQ---HKVSVM-----MAACDT--FRSGAVEQLR 463 (552)
Q Consensus 401 diL~di~~~~~~-------g~p~vI~lvG~nGvGKTTll~kLA~~l~~---~ggkVl-----l~~~D~--~r~ga~eqL~ 463 (552)
.++++++|.+.. |+ +++|+||||+||||+++.| +++.. -|.-|- +.-.|. .|.++.+.+.
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~--i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~ 846 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAY--CVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIM 846 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCC--EEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEEECCCSBEEEECC------
T ss_pred eEeeeeeeccccccccCCCCc--EEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHh
Confidence 467788887765 66 9999999999999999999 55432 221110 000010 1222211110
Q ss_pred HHHHHcCCceeecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH
Q 008816 464 THARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE 514 (552)
Q Consensus 464 ~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~ 514 (552)
.+...-...+...+++.+...++.+||+||||++.+...
T Consensus 847 ------------~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~d 885 (1022)
T 2o8b_B 847 ------------SGESTFFVELSETASILMHATAHSLVLVDELGRGTATFD 885 (1022)
T ss_dssp ---------------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHH
T ss_pred ------------hchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHH
Confidence 011111233445566777789999999999999877554
No 128
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=98.29 E-value=3.1e-06 Score=84.82 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=38.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
+++|+|.|..|+||||++..||..+...|.+|+++++|++..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~ 43 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKAD 43 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 358888999999999999999999999999999999998753
No 129
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.28 E-value=8.2e-06 Score=85.37 Aligned_cols=59 Identities=12% Similarity=-0.089 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHh------CCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEec
Q 008816 480 KDPAIVAKEAIQEATR------NGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 480 ~dp~~iar~aIa~a~~------~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
....+..+.+|++|+. .+|+++|+|||+...+.......+.-|.........+.++++.
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~ 344 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD 344 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESC
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 3444555677777776 7999999999997666544433333333333334555555554
No 130
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=98.26 E-value=4.4e-06 Score=80.19 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=52.0
Q ss_pred EEEEEc-CCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh
Q 008816 417 VVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (552)
Q Consensus 417 vI~lvG-~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~ 495 (552)
+|+|++ ..|+||||++..||..+...| +|+++++|+.... ...+.. ..+...++.. + .+.. +.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~-~~~~~~--~~l~~~vi~~----~-------~l~~-l~ 65 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA-TGWGKR--GSLPFKVVDE----R-------QAAK-YA 65 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH-HHHHHH--SCCSSEEEEG----G-------GHHH-HG
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH-HHHhcC--CCCCcceeCH----H-------HHHH-hh
Confidence 677874 499999999999999999999 9999999997532 222211 1111122221 0 2322 35
Q ss_pred CCCCEEEEeCCCC
Q 008816 496 NGSDVVLVDTAGR 508 (552)
Q Consensus 496 ~~~DvVIIDtpGr 508 (552)
..||+||||+|+.
T Consensus 66 ~~yD~viiD~p~~ 78 (209)
T 3cwq_A 66 PKYQNIVIDTQAR 78 (209)
T ss_dssp GGCSEEEEEEECC
T ss_pred hcCCEEEEeCCCC
Confidence 7899999999986
No 131
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=98.26 E-value=4.3e-06 Score=84.01 Aligned_cols=45 Identities=24% Similarity=0.193 Sum_probs=38.5
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHH
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE 460 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~e 460 (552)
++|+|++. .|+||||++..||..+...|.+|+++++|+.......
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~ 50 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSAR 50 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHH
Confidence 48888855 8999999999999999999999999999995544433
No 132
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.26 E-value=1.3e-06 Score=101.71 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=29.8
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
++++++|.+..|+ +++|+||||+||||+++.|+.
T Consensus 651 v~ndisl~~~~g~--i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 651 IPNDVYFEKDKQM--FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCEEEEEETTTBC--EEEEECCTTSSHHHHHHHHHH
T ss_pred ecccceeecCCCe--EEEEECCCCCCHHHHHHHHHH
Confidence 5567888888888 999999999999999999964
No 133
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.24 E-value=5.8e-06 Score=96.31 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.7
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA 436 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA 436 (552)
.|++++|.++.|+ +++|+|+||+|||||+..|.
T Consensus 657 ~Lk~Vsl~I~~Ge--ivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPLGV--LTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEESSS--EEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECCCC--EEEEEcCCCCCHHHHHHHHH
Confidence 5889999999999 99999999999999999854
No 134
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=98.24 E-value=4e-06 Score=82.63 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=36.4
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+++|+|++. .|+||||++..||..+...|.+|+++++|+.
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 459999855 8999999999999999999999999999986
No 135
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=98.23 E-value=6e-06 Score=82.87 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=36.4
Q ss_pred EEEEEc---CCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 417 VVVFVG---VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 417 vI~lvG---~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
+|+|++ ..|+||||++..||..+...|.+|+++++|++..
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQAT 78 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 777776 7999999999999999999999999999999754
No 136
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.23 E-value=6.1e-06 Score=95.83 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=30.7
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA 436 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA 436 (552)
.|++|+|.++.|+ +++|+|+||+|||||+..|.
T Consensus 639 ~Lk~Vsl~I~~Ge--iv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGT--FVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSS--EEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCC--EEEEEcCCCCCHHHHHHHHH
Confidence 5889999999999 99999999999999999854
No 137
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.21 E-value=1.5e-05 Score=83.40 Aligned_cols=92 Identities=12% Similarity=0.093 Sum_probs=59.0
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC-CcchHHHHHHHHHHHcCCceee--cCCCCCHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-FRSGAVEQLRTHARRLQVPIFE--KGYEKDPAIVA 486 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~-~r~ga~eqL~~~~~~l~v~~~~--~~~~~dp~~ia 486 (552)
++.|+ ++.|+||+|+||||++..|+..+.+.+++|++++... ++. . +++++++..-. .....+...+.
T Consensus 58 i~~G~--i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~-----~--ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 58 YPRGR--IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP-----V--YAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp EETTE--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH-----H--HHHHHTCCGGGCEEECCSSHHHHH
T ss_pred ccCCc--EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch-----H--HHHHcCCchhhhhhhhccCHHHHH
Confidence 35676 9999999999999999999999988899998877653 221 1 45555554210 00122333332
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCC
Q 008816 487 KEAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 487 r~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
..+-.......+++|+||....+.
T Consensus 129 ~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 129 EIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTCC
T ss_pred HHHHHHhhhcCCCeEEehHhhhhc
Confidence 211112224789999999866543
No 138
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=98.21 E-value=2.6e-05 Score=81.54 Aligned_cols=41 Identities=29% Similarity=0.297 Sum_probs=37.1
Q ss_pred CCCcEEEEEEc-CCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 412 QRKPYVVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 412 ~g~p~vI~lvG-~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
.+.+++|+|+| ..|+||||++..||..+...|.+|+++++|
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 34567999996 599999999999999999999999999999
No 139
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.21 E-value=3.6e-06 Score=96.21 Aligned_cols=39 Identities=31% Similarity=0.308 Sum_probs=31.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh-hCCc
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKV 444 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~-~~gg 444 (552)
.++++++|. |+ +++|+||||+||||+++.|++... +..|
T Consensus 567 ~vl~disl~---g~--i~~I~GpNGsGKSTlLr~iagl~~~~~~G 606 (765)
T 1ewq_A 567 FVPNDLEMA---HE--LVLITGPNMAGKSTFLRQTALIALLAQVG 606 (765)
T ss_dssp CCCEEEEES---SC--EEEEESCSSSSHHHHHHHHHHHHHHHTTT
T ss_pred eEeeeccCC---Cc--EEEEECCCCCChHHHHHHHHhhhhhcccC
Confidence 356677776 77 999999999999999999998764 4444
No 140
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=98.19 E-value=5.6e-06 Score=86.32 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=36.9
Q ss_pred EEEEEE-cCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 416 YVVVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 416 ~vI~lv-G~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
++|+|+ +..|+||||++..||..+...|.+|+++++|+...
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~ 43 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCN 43 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCT
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCC
Confidence 588888 55999999999999999999999999999998754
No 141
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=98.18 E-value=6e-06 Score=84.84 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=38.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
.+||+|.|..||||||+..+||..|...|.+|+++++|++
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4699999999999999999999999999999999999975
No 142
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.17 E-value=4.7e-06 Score=95.75 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=30.8
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+++++++. ..|+ +++|+||||+||||+++.|++..
T Consensus 597 vlndisl~-~~g~--i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 597 IANPLNLS-PQRR--MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCEEEEEC-SSSC--EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeccccc-CCCc--EEEEECCCCCChHHHHHHHHHHH
Confidence 56788887 6777 99999999999999999999864
No 143
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=98.16 E-value=1.1e-05 Score=84.83 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=36.6
Q ss_pred CCcEEEEEE-cCCCCChhHHHHHHHHHHh------hCCceEEEeeecCC
Q 008816 413 RKPYVVVFV-GVNGVGKSTNLAKVAYWLL------QHKVSVMMAACDTF 454 (552)
Q Consensus 413 g~p~vI~lv-G~nGvGKTTll~kLA~~l~------~~ggkVll~~~D~~ 454 (552)
..+++|+|+ |..|+||||++..||..+. ..|.+|+++++|+.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 346799999 5599999999999999988 46899999999985
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.14 E-value=1.5e-05 Score=84.68 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=80.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCcccccccc-cccccCCCcEEEEEEcCCCC
Q 008816 348 TKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDV-HAAKEQRKPYVVVFVGVNGV 426 (552)
Q Consensus 348 ~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di-~~~~~~g~p~vI~lvG~nGv 426 (552)
..+++..-+.++++.+++.+. . .|.+....... +..+.++- ..+.-|+.+ .--+..|+ +++|+||+|+
T Consensus 121 ~~gis~~~~~~i~~~a~~~~~-~---~~~ta~~l~~~--~~~~~~i~---TG~~~LD~lLgGGI~~Ge--i~~I~G~sGs 189 (400)
T 3lda_A 121 IKGISEAKADKLLNEAARLVP-M---GFVTAADFHMR--RSELICLT---TGSKNLDTLLGGGVETGS--ITELFGEFRT 189 (400)
T ss_dssp STTCCHHHHHHHHHHHHHHSC-C---SCCCHHHHHHH--HHTSCEEC---CSCHHHHHHTTTSEETTS--EEEEEESTTS
T ss_pred HhCCCHHHHHHHHHHHHHhcc-c---cCCCHHHHHhh--hccCCccc---cCChhHHHHhcCCcCCCc--EEEEEcCCCC
Confidence 468999999999998876432 1 24332222210 01111111 112222221 12356788 9999999999
Q ss_pred ChhHHHHHHHHHHh--h----CCceEEEeeec-CCcchHHHHHHHHHHHcCCce--------eecCCCCCHH---HHHHH
Q 008816 427 GKSTNLAKVAYWLL--Q----HKVSVMMAACD-TFRSGAVEQLRTHARRLQVPI--------FEKGYEKDPA---IVAKE 488 (552)
Q Consensus 427 GKTTll~kLA~~l~--~----~ggkVll~~~D-~~r~ga~eqL~~~~~~l~v~~--------~~~~~~~dp~---~iar~ 488 (552)
||||++..|+.... + .++++++++.. .++. +.++.+++++++.. +... .+.. .....
T Consensus 190 GKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~---~rl~~~a~~~gl~~~~vleni~~~~~--~~~~~~~~~l~~ 264 (400)
T 3lda_A 190 GKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP---VRLVSIAQRFGLDPDDALNNVAYARA--YNADHQLRLLDA 264 (400)
T ss_dssp SHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH---HHHHHHHHHTTCCHHHHHHTEEEEEC--CSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCH---HHHHHHHHHcCCChHhHhhcEEEecc--CChHHHHHHHHH
Confidence 99999998774332 2 24566665544 4443 33455566665431 1111 1221 12222
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCC
Q 008816 489 AIQEATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 489 aIa~a~~~~~DvVIIDtpGr~~~ 511 (552)
+.......++++|+||++..+..
T Consensus 265 ~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 265 AAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHHhcCCceEEecchhhhCc
Confidence 33333457899999999876543
No 145
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=98.11 E-value=4.7e-06 Score=86.42 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=36.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+.++.+.|..|+||||++..||..+...|.+|+++++|..
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA 55 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4577778999999999999999999999999999999963
No 146
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.11 E-value=1.3e-05 Score=83.56 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=59.9
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceee--cCCCCCHHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE--KGYEKDPAIVAK 487 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~--~~~~~dp~~iar 487 (552)
++.|+ ++.|+|++|+||||++..|+..+...+++|++++.+.-.. +. +++++++..-. .....+......
T Consensus 58 l~~G~--iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~----~~--~a~~lG~~~~~l~i~~~~~~e~~l~ 129 (349)
T 2zr9_A 58 LPRGR--VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALD----PE--YAKKLGVDTDSLLVSQPDTGEQALE 129 (349)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC----HH--HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcC----HH--HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 45777 9999999999999999999988888899999988774211 11 35556544210 001122333222
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCC
Q 008816 488 EAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 488 ~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
.+-..+...++++||||+++.+.
T Consensus 130 ~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 130 IADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHHHHHhcCCCCEEEEcChHhhc
Confidence 11111224569999999998765
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.10 E-value=1.3e-06 Score=89.10 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=36.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHh--hCCceEEEeeecCCc
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFR 455 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~--~~ggkVll~~~D~~r 455 (552)
+.+|+|+|+|||||||+++.|++.+. +.+|.|.++++|-+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 44999999999999999999999998 889999998877654
No 148
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=98.09 E-value=9.1e-06 Score=84.45 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=34.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
++.+.|..|+||||++..||..+...|.+|+++++|+.
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 55555889999999999999999999999999999983
No 149
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.08 E-value=2e-06 Score=84.34 Aligned_cols=52 Identities=19% Similarity=0.073 Sum_probs=32.0
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-----CceEEEeeecC
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDT 453 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-----ggkVll~~~D~ 453 (552)
..+|++++|.+.+|. +|+|+|||||||||+++.|++.+-.- ...|.++..|.
T Consensus 12 ~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 12 DLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp -----------CCSE--EEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred ceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 357889999999887 99999999999999999999977321 23455666664
No 150
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.08 E-value=1.7e-06 Score=88.72 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=39.4
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll 448 (552)
.+|+++++.+++|+ +++|+||||+||||+++.|++++ .|+|..
T Consensus 114 ~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~ 156 (305)
T 2v9p_A 114 NALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL---GGSVLS 156 (305)
T ss_dssp HHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred hhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence 47889999999999 99999999999999999999998 677764
No 151
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.08 E-value=1.4e-05 Score=82.00 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.++.+.|..|+||||++..||..+...|.+|+++++|+
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 35555588999999999999999999999999999998
No 152
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=98.07 E-value=3e-05 Score=79.81 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=35.0
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
.++.+.|..|+||||++..||..+...|.+|+++++|+.
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 366666889999999999999999999999999999985
No 153
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.07 E-value=2.7e-06 Score=83.33 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+.+++++|..||||||++..|+.++. .|.+|+++++|+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 45888899999999999999999999 9999999999985
No 154
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.05 E-value=1.4e-06 Score=94.62 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=46.7
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
..+|++++|.+.+ + +++|+|||||||||++++|++++.+..|.|.+.+.++.
T Consensus 17 ~~~l~~vsl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-L--VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-S--EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-c--eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 3468899999988 8 99999999999999999999999999999998877654
No 155
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=97.96 E-value=1.2e-05 Score=72.39 Aligned_cols=77 Identities=19% Similarity=0.447 Sum_probs=55.4
Q ss_pred CcceEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhhhhcccC--------CCceeec--------cCCCceeeEEEEe
Q 008816 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSG--------LASFNYD--------SAGAAYTLKWTFH 64 (552)
Q Consensus 1 MlD~~~IftkgGiVLWs~~~~~~~~~~~~in~lI~~vlleer~~--------~~~~~~~--------~~~~~y~lkw~~~ 64 (552)
|+|+|.|||..|=||+.+.-..-......||++|.+.|..--+- ...|.|. ...++|+..|...
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 99999999999999997654444566778999999998732211 0112211 1227899999999
Q ss_pred cccceEEEEEecc
Q 008816 65 NELGLVFVAVYQR 77 (552)
Q Consensus 65 ne~~Lvfv~vyq~ 77 (552)
+...|+|||-|-.
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 9999999999965
No 156
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.96 E-value=1.3e-05 Score=76.30 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeec---C-CCCCHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK---G-YEKDPAIVAKEAI 490 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~---~-~~~dp~~iar~aI 490 (552)
..+|+|+|..||||||++..|++.+... .++.++..|+........ .+..++.+... + ....+.. ...++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 103 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSKADYER----VRRFGIKAEAISTGKECHLDAHM-IYHRL 103 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCHHHHHH----HHTTTCEEEECCCTTCSSCCHHH-HHTTG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCchhHHH----HHhCCCcEEEecCCceeecccHH-HHHHH
Confidence 4589999999999999999999887655 788988888864311111 12223332211 1 1122222 22233
Q ss_pred HHHHhCCCCEEEEeCCCC
Q 008816 491 QEATRNGSDVVLVDTAGR 508 (552)
Q Consensus 491 a~a~~~~~DvVIIDtpGr 508 (552)
. ...++|++|+||+|.
T Consensus 104 ~--~~~~~d~iiidt~G~ 119 (221)
T 2wsm_A 104 K--KFSDCDLLLIENVGN 119 (221)
T ss_dssp G--GGTTCSEEEEEEEEB
T ss_pred H--hcCCCCEEEEeCCCC
Confidence 2 346899999999994
No 157
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=97.95 E-value=9.8e-06 Score=84.47 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHh--hCCceEEEeeecC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDT 453 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~--~~ggkVll~~~D~ 453 (552)
++++.+.|..|+||||++..||..+. ..|.+|+++++|.
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 45888889999999999999999999 8999999999995
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=5.6e-06 Score=84.66 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=24.8
Q ss_pred EEEEcCCCCChhHHHHHHHH-HHhhCCceEEEeeec
Q 008816 418 VVFVGVNGVGKSTNLAKVAY-WLLQHKVSVMMAACD 452 (552)
Q Consensus 418 I~lvG~nGvGKTTll~kLA~-~l~~~ggkVll~~~D 452 (552)
++|+||+|+||||++..|++ ++.+..+.+.+.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 89999999999999999999 556667777665543
No 159
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.93 E-value=3.7e-06 Score=82.69 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=38.1
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
.|+ ..|.+.|++||||||++..+|..+...|.+|++++.|+...
T Consensus 4 ~g~-l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~ 47 (228)
T 2r8r_A 4 RGR-LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR 47 (228)
T ss_dssp CCC-EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC
T ss_pred Cce-EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 454 35778899999999999999999999999999999999644
No 160
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.93 E-value=1.6e-05 Score=81.97 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=39.3
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhh--CCceEEEeeecCCcc
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTFRS 456 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~--~ggkVll~~~D~~r~ 456 (552)
.+.|.+|+|+|||||||||++++|++.+.. .++.|.++..|.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 356889999999999999999999999874 578899999998753
No 161
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.92 E-value=1.8e-06 Score=94.55 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=60.3
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecC----
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKG---- 477 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~---- 477 (552)
+++++++.+..|. +++|+||||||||||++.|++++.+..+.|.+-+.+.++.... .. +.+..+.
T Consensus 249 ~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~-------~~--v~~~~r~~~~~ 317 (511)
T 2oap_1 249 VLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHE-------NW--IAEVTRTGMGE 317 (511)
T ss_dssp HHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCS-------SE--EEEECBCCSSS
T ss_pred HHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCC-------Ce--EEEEeeccccc
Confidence 4556677778888 8999999999999999999999988888888876654332110 00 1111100
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Q 008816 478 YEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 478 ~~~dp~~iar~aIa~a~~~~~DvVIIDtpG 507 (552)
...+. ..++..++.++||++++++-.
T Consensus 318 ~~~~~----~~~l~~~LR~~PD~iivgEir 343 (511)
T 2oap_1 318 GEIDM----YDLLRAALRQRPDYIIVGEVR 343 (511)
T ss_dssp CCBCH----HHHHHTTGGGCCSEEEESCCC
T ss_pred CCcCH----HHHHHHhhccCCCeEEeCCcC
Confidence 01122 234555667889999998864
No 162
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.92 E-value=7.1e-05 Score=76.56 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=25.0
Q ss_pred ccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 406 i~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+++.+.+| +.+|+|+||+||||++..|.+.+
T Consensus 18 ~~l~~~~g---~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 18 SLIGFSDR---VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEECCSS---EEEEECCTTTCSTHHHHHHHHTS
T ss_pred eEEecCCC---cEEEECCCCCcHHHHHHHHHHHh
Confidence 34445444 99999999999999999999654
No 163
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.91 E-value=4.3e-06 Score=87.11 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=43.4
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
+.+++++ |.+.+|+ +++|+|+||+|||||++.|++++.++.+.|.+++.+
T Consensus 59 ~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp CHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 3467778 8899999 999999999999999999999998887777776654
No 164
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=97.91 E-value=3.8e-05 Score=73.34 Aligned_cols=35 Identities=11% Similarity=-0.040 Sum_probs=31.7
Q ss_pred EEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 416 ~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
++|+|+|. .|+||||++..||..+...|.+|++++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 47889987 899999999999999999999999964
No 165
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.91 E-value=4.5e-05 Score=78.95 Aligned_cols=149 Identities=13% Similarity=0.157 Sum_probs=66.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCccccccccc-ccccCCCcEEEEEEcCCC
Q 008816 347 MTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH-AAKEQRKPYVVVFVGVNG 425 (552)
Q Consensus 347 l~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~-~~~~~g~p~vI~lvG~nG 425 (552)
..++++...+.++++.+...+. ..|.+..... +...++..-...+.-|+.+- --++.|. ++.|+|++|
T Consensus 64 ~~~~is~~~~~~~~~~a~~~~~----~~~~~~~~~~-----~~~~~~~~i~TG~~~LD~~LgGGl~~G~--i~~I~G~~G 132 (343)
T 1v5w_A 64 NVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS-----EKRKMVFHITTGSQEFDKLLGGGIESMA--ITEAFGEFR 132 (343)
T ss_dssp --------------------------CCSEEHHHHH-----HHGGGCCCBCCSCHHHHHHTTSSBCSSE--EEEEECCTT
T ss_pred HhhCCCHHHHHHHHHHHHhhcc----cCCCcHHHHH-----hhhcccceeecCChhHHHHhcCCCCCCe--EEEEECCCC
Confidence 3467777778888777765432 1233322222 11111111011122222211 1345676 999999999
Q ss_pred CChhHHHHHHHHHHhh------CCceEEEeeecC-CcchHHHHHHHHHHHcCCce--------eecCCCC-CHHHHHHHH
Q 008816 426 VGKSTNLAKVAYWLLQ------HKVSVMMAACDT-FRSGAVEQLRTHARRLQVPI--------FEKGYEK-DPAIVAKEA 489 (552)
Q Consensus 426 vGKTTll~kLA~~l~~------~ggkVll~~~D~-~r~ga~eqL~~~~~~l~v~~--------~~~~~~~-dp~~iar~a 489 (552)
+||||++..||..... .+++|++++++. |+ .+++..++..+++.. +...+.. ....+...+
T Consensus 133 sGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~---~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l 209 (343)
T 1v5w_A 133 TGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR---PDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYV 209 (343)
T ss_dssp CTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCC---HHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC---HHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHH
Confidence 9999999999986432 477888887764 33 345656666665532 1111111 122222212
Q ss_pred HHHHHh--CCCCEEEEeCCCCC
Q 008816 490 IQEATR--NGSDVVLVDTAGRM 509 (552)
Q Consensus 490 Ia~a~~--~~~DvVIIDtpGr~ 509 (552)
...... .++++||||..+.+
T Consensus 210 ~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 210 AAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHhcCCCccEEEEechHHH
Confidence 222233 68999999998764
No 166
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.90 E-value=6.2e-06 Score=77.58 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.4
Q ss_pred ccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 408 ~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
+.+.+|+ +++|+|||||||||+++.|++.+.
T Consensus 2 ~~m~~g~--ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 2 NAMNKAN--LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ---CCCC--EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcCCCCc--EEEEECcCCCCHHHHHHHHHhhCC
Confidence 3455777 999999999999999999999863
No 167
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.89 E-value=8.9e-06 Score=77.64 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=34.4
Q ss_pred cCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
.+|. +|+|+|||||||||+++.|++++.+.|..+..+..|-|
T Consensus 20 ~~g~--~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQ--LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCE--EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCe--EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 3455 99999999999999999999999876555666666654
No 168
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=97.89 E-value=9.5e-06 Score=85.51 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=29.8
Q ss_pred CCcEEEEEE-cCCCCChhHHHHHHHHHHh------hCCceEEEeeecCCc
Q 008816 413 RKPYVVVFV-GVNGVGKSTNLAKVAYWLL------QHKVSVMMAACDTFR 455 (552)
Q Consensus 413 g~p~vI~lv-G~nGvGKTTll~kLA~~l~------~~ggkVll~~~D~~r 455 (552)
..+++|+|+ |..|+||||++..||..+. ..|.+|+++++|+..
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~ 158 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA 158 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 456799999 5599999999999999998 579999999999753
No 169
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.89 E-value=3.1e-05 Score=79.33 Aligned_cols=93 Identities=16% Similarity=0.261 Sum_probs=60.4
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC------CceEEEeeecC-CcchHHHHHHHHHHHcCCce--------e
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH------KVSVMMAACDT-FRSGAVEQLRTHARRLQVPI--------F 474 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~------ggkVll~~~D~-~r~ga~eqL~~~~~~l~v~~--------~ 474 (552)
++.|. ++.|+|++|+||||++..|+...... +++|++++.+. |+ .+++..+++.+++.. +
T Consensus 104 l~~G~--i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~---~~~l~~~~~~~g~~~~~~~~~l~~ 178 (324)
T 2z43_A 104 IETRT--MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFR---WERIENMAKALGLDIDNVMNNIYY 178 (324)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTCCHHHHHHTEEE
T ss_pred CCCCc--EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC---HHHHHHHHHHhCCCHHHHhccEEE
Confidence 56777 99999999999999999999875433 67888887764 43 345666666665542 1
Q ss_pred ecCCCCCHHH---HHHHHHHHHHh-CCCCEEEEeCCCCC
Q 008816 475 EKGYEKDPAI---VAKEAIQEATR-NGSDVVLVDTAGRM 509 (552)
Q Consensus 475 ~~~~~~dp~~---iar~aIa~a~~-~~~DvVIIDtpGr~ 509 (552)
.. ..+... +...+...... .++++||||..+.+
T Consensus 179 ~~--~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 179 IR--AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp EE--CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred Ee--CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 11 122221 22222222223 68999999998754
No 170
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.89 E-value=7.3e-05 Score=78.08 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=59.4
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCcee--ecCCCCCHHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF--EKGYEKDPAIVAK 487 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~--~~~~~~dp~~iar 487 (552)
++.|. ++.|.|++|+||||++..|+..+...+++|++++.+.-. +++ ++..+++..- ......+...+.
T Consensus 60 l~~G~--ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~----~~~--~a~~~g~~~~~l~i~~~~~~e~~~- 130 (356)
T 1u94_A 60 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPI--YARKLGVDIDNLLCSQPDTGEQAL- 130 (356)
T ss_dssp EETTS--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC----CHH--HHHHTTCCGGGCEEECCSSHHHHH-
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc----cHH--HHHHcCCChhheeeeCCCCHHHHH-
Confidence 45677 999999999999999999998888888899998875421 111 2445554320 000111222222
Q ss_pred HHHHH-HHhCCCCEEEEeCCCCCCC
Q 008816 488 EAIQE-ATRNGSDVVLVDTAGRMQV 511 (552)
Q Consensus 488 ~aIa~-a~~~~~DvVIIDtpGr~~~ 511 (552)
..+.. ....++++||||+++.+..
T Consensus 131 ~~~~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 131 EICDALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHHHHHTCCSEEEEECGGGCCC
T ss_pred HHHHHHHhccCCCEEEEcCHHHhcc
Confidence 22222 2247899999999887653
No 171
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=97.88 E-value=1.2e-05 Score=84.57 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=33.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~ 451 (552)
+++.+.|..|+||||++..||..+...|.+|+++++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 478888999999999999999999999999999998
No 172
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.87 E-value=6.2e-06 Score=78.68 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=25.7
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
++++ ..+.+|+ +++|+|||||||||++++|++++.
T Consensus 11 ~~~~--~~i~~Ge--i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 11 TARG--QPAAVGR--VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----------CCC--EEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCC--CCCCCCC--EEEEECCCCCCHHHHHHHHHhhCC
Confidence 4444 4577898 999999999999999999999884
No 173
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.85 E-value=6.7e-05 Score=76.44 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=81.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHhCCCCccccccccc-ccccCCCcEEEEEEcCCCC
Q 008816 348 TKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH-AAKEQRKPYVVVFVGVNGV 426 (552)
Q Consensus 348 ~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~-~~~~~g~p~vI~lvG~nGv 426 (552)
..+++.+-+.++++.+...+. . .|.+...... ....+..-...+.-|+.+- --++.|. ++.|.|++|+
T Consensus 41 ~~gis~~~a~~~i~~a~~~~~-~---~~~~~~~~~~-----~~~~~~~i~TG~~~LD~~l~GGl~~g~--i~~i~G~~gs 109 (322)
T 2i1q_A 41 IEGISEKAAAKMIMGARDLCD-L---GFKSGIDLLK-----QRSTVWKLSTSSSELDSVLGGGLESQS--VTEFAGVFGS 109 (322)
T ss_dssp STTCCHHHHHHHHHHHHHHTT-C---SCCCTHHHHH-----HHTTCCEECCSCHHHHHHTTSSEETTE--EEEEEESTTS
T ss_pred hhCcCHHHHHHHHHHHHHhhh-h---cCCcHHHHHH-----HhccCCeecCCChhHHHhcCCCccCCe--EEEEECCCCC
Confidence 478999999999998877643 2 2433332221 1111100011222222221 1245666 9999999999
Q ss_pred ChhHHHHHHHHHHh------------hCC----ceEEEeeecC-CcchHHHHHHHHHHHcCCce--------eecCCCCC
Q 008816 427 GKSTNLAKVAYWLL------------QHK----VSVMMAACDT-FRSGAVEQLRTHARRLQVPI--------FEKGYEKD 481 (552)
Q Consensus 427 GKTTll~kLA~~l~------------~~g----gkVll~~~D~-~r~ga~eqL~~~~~~l~v~~--------~~~~~~~d 481 (552)
||||++..|+.... ..| ++|++++.+. |+ .+++..+++.+++.. +... .+
T Consensus 110 GKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~---~~~l~~~~~~~g~~~~~~~~~l~~~~~--~~ 184 (322)
T 2i1q_A 110 GKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR---PERIMQMAEHAGIDGQTVLDNTFVARA--YN 184 (322)
T ss_dssp SHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC---HHHHHHHHHHHTCCHHHHHHTEEEEEC--SS
T ss_pred CHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC---HHHHHHHHHHcCCCHHHHhcCEEEEeC--CC
Confidence 99999999997532 224 6888887764 33 345666666665542 1111 22
Q ss_pred HHH---HHHHHHHHHHh-CCCCEEEEeCCCCC
Q 008816 482 PAI---VAKEAIQEATR-NGSDVVLVDTAGRM 509 (552)
Q Consensus 482 p~~---iar~aIa~a~~-~~~DvVIIDtpGr~ 509 (552)
... +.......... .++++||||+.+.+
T Consensus 185 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 185 SDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred HHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 222 22112222223 57899999997653
No 174
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.84 E-value=0.00023 Score=73.04 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=64.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhC-CceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH-
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT- 494 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~-ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~- 494 (552)
.++|+||+|+||||++..++..+... +..+..+.|..... ....+......++..... .+.....+.. .+...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~l~~~~~~--~~~~~~~~~~-~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN-FTAIIGEIARSLNIPFPR--RGLSRDEFLA-LLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS-HHHHHHHHHHHTTCCCCS--SCCCHHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC-HHHHHHHHHHHhCccCCC--CCCCHHHHHH-HHHHHHh
Confidence 89999999999999999999988877 56777777654332 233344445555544211 1223333332 222222
Q ss_pred -hCCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 495 -RNGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 495 -~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
..++.+|+||++..+ +...+..|..+..
T Consensus 122 ~~~~~~vlilDE~~~l--~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL--APDILSTFIRLGQ 150 (389)
T ss_dssp HTTCCEEEEEETGGGS--CHHHHHHHHHHTT
T ss_pred hcCCeEEEEEECcccc--chHHHHHHHHHHH
Confidence 245779999999866 5566666666553
No 175
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.84 E-value=4.8e-06 Score=80.67 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=22.3
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHH-HHH
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA-YWL 439 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA-~~l 439 (552)
..+++|.+.+|+ +++|+|||||||||+++.|+ +.+
T Consensus 17 ~~~~sl~v~~G~--ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 17 QGPGSMLKSVGV--ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -----CCEECCC--EEEEECSCC----CHHHHHHC---
T ss_pred cCCCCcccCCCC--EEEEECCCCCCHHHHHHHHHhcCC
Confidence 456889999999 99999999999999999999 887
No 176
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.83 E-value=1.5e-05 Score=75.72 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=37.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
+.+|+|+|++||||||++..|++.+.+.++.|.+.+.|.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 459999999999999999999999998999999998887643
No 177
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.82 E-value=7.6e-06 Score=87.86 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=44.2
Q ss_pred ccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee
Q 008816 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (552)
Q Consensus 400 ~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~ 451 (552)
..+|+++ |.+.+|+ +++|+|||||||||+++.|+++..++.+.|.+.+.
T Consensus 145 ~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 4577888 8999999 99999999999999999999999988888888775
No 178
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.80 E-value=3.1e-05 Score=77.74 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=37.7
Q ss_pred cccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 399 ~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
..++++++++.++.| ++|+||||+||||+++.||+.+.. +.+.+.+.+.
T Consensus 32 ~~~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp SHHHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred CHHHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 345778888877665 899999999999999999998754 3555554444
No 179
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.77 E-value=0.00018 Score=75.39 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=59.9
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCce----eecCCCCCHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI----FEKGYEKDPAIV 485 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~----~~~~~~~dp~~i 485 (552)
++.|. ++.|.|++|+||||++..|+..+...+++|++++.+.- .+++ +++++++.. +.. ..+...+
T Consensus 71 l~~G~--li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s----~~~~--~a~~~g~d~~~l~i~~--~~~~e~~ 140 (366)
T 1xp8_A 71 IPRGR--ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA----LDPV--YARALGVNTDELLVSQ--PDNGEQA 140 (366)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC----CCHH--HHHHTTCCGGGCEEEC--CSSHHHH
T ss_pred ccCCc--EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC----hhHH--HHHHcCCCHHHceeec--CCcHHHH
Confidence 35677 99999999999999999999888888899999988752 1222 345555542 111 1233333
Q ss_pred HHHHHHHHH-hCCCCEEEEeCCCCCC
Q 008816 486 AKEAIQEAT-RNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 486 ar~aIa~a~-~~~~DvVIIDtpGr~~ 510 (552)
. ..+.... ..++++||||..+.+.
T Consensus 141 l-~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 141 L-EIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp H-HHHHHHHTTTCCSEEEEECTTTCC
T ss_pred H-HHHHHHHhcCCCCEEEEeChHHhc
Confidence 2 2232222 3679999999987654
No 180
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.77 E-value=5.6e-05 Score=80.84 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=31.4
Q ss_pred cccccccccCCCcEE--EEEEcCCCCChhHHHHHHHHHH
Q 008816 403 LRDVHAAKEQRKPYV--VVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 403 L~di~~~~~~g~p~v--I~lvG~nGvGKTTll~kLA~~l 439 (552)
|++++|.+.+|. + ++|+|+||+|||||++.|++..
T Consensus 30 L~~vsl~i~~Ge--i~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGF--CFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CC--EEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCC--eeEEEEECCCCCCHHHHHHHHhCcc
Confidence 788999999999 7 9999999999999999999863
No 181
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.77 E-value=1.8e-05 Score=75.02 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
.+|+|+|+|||||||+++.|++.+.+ .+.++..|.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 49999999999999999999998875 5778888764
No 182
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.75 E-value=6.7e-05 Score=82.97 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=36.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
++++.+.|..|+||||++..||..+...|.+|+++++|+
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 448888899999999999999999999999999999997
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.74 E-value=4.9e-05 Score=72.35 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=33.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.++|+||+|+||||++..|+..+...+..+.++.+..
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 8999999999999999999998888888888887754
No 184
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.72 E-value=0.0019 Score=68.90 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=38.8
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeecC
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDT 453 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D~ 453 (552)
|+.+.--+.+|. ++.|.|++|+||||++..||..... .|.+|+++....
T Consensus 190 LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 190 LDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp HHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred hhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 443333356787 9999999999999999999987765 577899988764
No 185
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.71 E-value=8.1e-05 Score=73.74 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+.+|+|+|++||||||+++.|+..+...|..+++++.|.+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4599999999999999999999988877777776676654
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=2.8e-05 Score=79.74 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=57.5
Q ss_pred ccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHH
Q 008816 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (552)
Q Consensus 408 ~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar 487 (552)
..+..|+...++|+||+|+||||++..||+.+...++.+.+...+......+++++
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir------------------------ 94 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR------------------------ 94 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH------------------------
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH------------------------
Confidence 33445552228999999999999999999988766554444333321111122221
Q ss_pred HHHHHHH------hCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEE
Q 008816 488 EAIQEAT------RNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNII 535 (552)
Q Consensus 488 ~aIa~a~------~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii 535 (552)
..+.... ..++.++|||++..+. ......|.++...+.....+.++
T Consensus 95 ~~i~~~~~~~~~~~~~~~viiiDe~~~l~--~~~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 95 NQIKDFASTRQIFSKGFKLIILDEADAMT--NAAQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp THHHHHHHBCCSSSCSCEEEEETTGGGSC--HHHHHHHHHHHHHTTTTEEEEEE
T ss_pred HHHHHHHhhcccCCCCceEEEEeCCCCCC--HHHHHHHHHHHhcCCCCeEEEEE
Confidence 1111111 1357899999997664 23445566655544333333343
No 187
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=97.71 E-value=8.2e-05 Score=77.49 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=34.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh--hCCceEEEeeecCC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTF 454 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~--~~ggkVll~~~D~~ 454 (552)
++.+.|..|+||||+++.||..+. ..|.+|+++++|+.
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 555558899999999999999999 89999999999983
No 188
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.70 E-value=1.8e-05 Score=79.49 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
..++|+||||+||||+++.|++...+..|.|.+.+.++
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i 40 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI 40 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc
Confidence 37899999999999999999999999999888876654
No 189
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.68 E-value=1.4e-05 Score=74.84 Aligned_cols=26 Identities=35% Similarity=0.323 Sum_probs=23.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
.+++|+|||||||||+++.|++.+.+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 48999999999999999999998874
No 190
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.67 E-value=9.3e-06 Score=90.58 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=26.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeec
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACD 452 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D 452 (552)
.|+|||+|||||||++..|+|++.+ ..|.|.+.+.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~ 83 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLV 83 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEE
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEE
Confidence 4999999999999999999999877 67888777666
No 191
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.66 E-value=2.9e-05 Score=76.05 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=60.4
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe--eecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHH
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--ACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~--~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~a 489 (552)
+|. ++.+.|+.|+||||++..++..+...|.+|+++ ..|. | +. . ..+.++|+....... .....+. ..
T Consensus 11 ~G~--i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~-r-~~-~---~i~srlG~~~~~~~~-~~~~~i~-~~ 80 (223)
T 2b8t_A 11 IGW--IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT-R-SI-R---NIQSRTGTSLPSVEV-ESAPEIL-NY 80 (223)
T ss_dssp CCE--EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG-G-GC-S---SCCCCCCCSSCCEEE-SSTHHHH-HH
T ss_pred CcE--EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc-h-HH-H---HHHHhcCCCcccccc-CCHHHHH-HH
Confidence 455 999999999999999999999888889999988 3443 3 21 1 123445544321111 1222222 11
Q ss_pred HHHH-HhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 490 IQEA-TRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 490 Ia~a-~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
+... ....+|+|+||++..+. ...++.+..+.
T Consensus 81 i~~~~~~~~~dvViIDEaQ~l~--~~~ve~l~~L~ 113 (223)
T 2b8t_A 81 IMSNSFNDETKVIGIDEVQFFD--DRICEVANILA 113 (223)
T ss_dssp HHSTTSCTTCCEEEECSGGGSC--THHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEecCccCc--HHHHHHHHHHH
Confidence 1111 12359999999997543 23556665554
No 192
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.65 E-value=2.5e-05 Score=83.41 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=35.5
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
+|. +++|+||||||||||++.|++++.+..++|.++.-++
T Consensus 166 ~gg--ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHG--IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSE--EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred cCC--eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 455 9999999999999999999999998889999887554
No 193
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.65 E-value=0.0002 Score=73.07 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=40.3
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
|+.+.--+.+|. ++.|.|++|+||||++..+|......+.+|+++....
T Consensus 58 LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 58 LDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp HHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred HHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 444433366788 9999999999999999999988777788999998874
No 194
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=2.7e-05 Score=73.69 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=24.5
Q ss_pred CCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 397 ~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
...-..+++++|.+.++. +|+|+|++||||||+++.|+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 9 SGVDLGTENLYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------------CCC--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCceeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence 334456789999998887 99999999999999999999876
No 195
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.64 E-value=2e-05 Score=73.36 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=29.7
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
+.+|+ +|+|+|||||||||+++.|++. ...+.|.+.+
T Consensus 6 i~~g~--~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~ 42 (191)
T 1zp6_A 6 DLGGN--ILLLSGHPGSGKSTIAEALANL--PGVPKVHFHS 42 (191)
T ss_dssp CCTTE--EEEEEECTTSCHHHHHHHHHTC--SSSCEEEECT
T ss_pred CCCCe--EEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcc
Confidence 45666 9999999999999999999986 4456666644
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.61 E-value=6.5e-05 Score=71.62 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=54.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeec--C--CCCCHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK--G--YEKDPAIVAKEA 489 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~--~--~~~dp~~iar~a 489 (552)
.+++|+|+|..||||||++..|+..+... .++.+++.|.... .+.- .....+...... + ........ ...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~--~d~~--~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 110 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAK--FDAE--RMEKHGAKVVPLNTGKECHLDAHLV-GHA 110 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTH--HHHH--HHHTTTCEEEEEECTTCSSCCHHHH-HHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCC--ccHH--HHHhcCCcEEEecCCceEeccHHHH-HHH
Confidence 34589999999999999999999877654 6788888887532 2211 112223332221 1 12222222 233
Q ss_pred HHHHHhCCCCEEEEeCCCCC
Q 008816 490 IQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 490 Ia~a~~~~~DvVIIDtpGr~ 509 (552)
+......++|++++|++|.+
T Consensus 111 ~~~l~~~~~d~~~id~~g~i 130 (226)
T 2hf9_A 111 LEDLNLDEIDLLFIENVGNL 130 (226)
T ss_dssp HTTSCGGGCSEEEEECCSCS
T ss_pred HHHHhcCCCCEEEEeCCCCc
Confidence 32222356799999999953
No 197
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.59 E-value=0.00044 Score=71.73 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=63.8
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHH--HHHHcCCceee--cCCCCCHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT--HARRLQVPIFE--KGYEKDPAIV 485 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~--~~~~l~v~~~~--~~~~~dp~~i 485 (552)
+.+|. ++.|.|++|+||||++..||..+...+++|+++..+.- .+|+.. .+...+++... .+ ..+....
T Consensus 43 l~~G~--LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms----~~ql~~Rlls~~~~v~~~~l~~g-~Ls~~e~ 115 (338)
T 4a1f_A 43 FNKGS--LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS----AEQLALRALSDLTSINMHDLESG-RLDDDQW 115 (338)
T ss_dssp BCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC----HHHHHHHHHHHHHCCCHHHHHHT-CCCHHHH
T ss_pred CCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC----HHHHHHHHHHHhhCCCHHHHhcC-CCCHHHH
Confidence 45788 99999999999999999999988888999999988762 333322 22233444321 11 2334333
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 486 AKEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 486 ar~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
.+.+.+.....+..+.|.|+|+.. -..+...+..+
T Consensus 116 ~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l 150 (338)
T 4a1f_A 116 ENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKL 150 (338)
T ss_dssp HHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHH
Confidence 333333333445678888887632 23344444443
No 198
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.59 E-value=0.00015 Score=77.55 Aligned_cols=89 Identities=19% Similarity=0.312 Sum_probs=54.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhC--CceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 492 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~--ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~ 492 (552)
+..++|.||+|+||||++..|+..+... +.++..+.+..+ ...+...... ... ..+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~----~~~~~~~~~~-----------~~~-----~~~~~ 189 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF----LNDLVDSMKE-----------GKL-----NEFRE 189 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH----HHHHHHHHHT-----------TCH-----HHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH----HHHHHHHHHc-----------ccH-----HHHHH
Confidence 3478999999999999999999988665 677777666542 1111111110 000 11222
Q ss_pred HHhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 493 ATRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 493 a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
.....++++|||++..+.......++|..+.
T Consensus 190 ~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l 220 (440)
T 2z4s_A 190 KYRKKVDILLIDDVQFLIGKTGVQTELFHTF 220 (440)
T ss_dssp HHTTTCSEEEEECGGGGSSCHHHHHHHHHHH
T ss_pred HhcCCCCEEEEeCcccccCChHHHHHHHHHH
Confidence 2223799999999987765433444444443
No 199
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.58 E-value=0.00016 Score=73.26 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=53.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~ 496 (552)
.+.|.||+|+||||++..|+..+...+..+..+.+..+. ..+...... ... ..+... ..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~-----------~~~-----~~~~~~-~~ 97 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA----QAMVEHLKK-----------GTI-----NEFRNM-YK 97 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH----HHHHHHHHH-----------TCH-----HHHHHH-HH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH----HHHHHHHHc-----------CcH-----HHHHHH-hc
Confidence 688999999999999999999888778888877765431 111111110 000 111111 23
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 497 GSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 497 ~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
++++++||++..+.......+++..+.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l 124 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIF 124 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHH
Confidence 589999999987665433444444443
No 200
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.58 E-value=2.5e-05 Score=76.07 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=32.1
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh--CCceEEEeeec
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACD 452 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~--~ggkVll~~~D 452 (552)
.++|+ +++|+|||||||||+++.|++.+.+ ..+.|.+.+.+
T Consensus 13 ~~~G~--ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 13 MAQGT--LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 55 (219)
T ss_dssp --CCC--EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred CCCCc--EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence 56788 9999999999999999999998874 45566665443
No 201
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.57 E-value=0.00013 Score=74.37 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhC---CceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~---ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa 491 (552)
+..++|+||+|+||||++..++..+... +..+..+.|.... .....+......++.+... .+.....+......
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLLESLDVKVPF--TGLSIAELYRRLVK 121 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTTTSCCCCS--SSCCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHH
Confidence 4489999999999999999999888765 5566666654322 1222333444444443211 12233333322222
Q ss_pred HHHhC-CCCEEEEeCCCCC
Q 008816 492 EATRN-GSDVVLVDTAGRM 509 (552)
Q Consensus 492 ~a~~~-~~DvVIIDtpGr~ 509 (552)
..... .+.+|+||++..+
T Consensus 122 ~l~~~~~~~vlilDE~~~l 140 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAF 140 (386)
T ss_dssp HHHTCCSCEEEEEETHHHH
T ss_pred HHhccCCeEEEEEcChhhh
Confidence 22222 3779999998653
No 202
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.57 E-value=0.0026 Score=63.48 Aligned_cols=99 Identities=21% Similarity=0.204 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCc----eEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKV----SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~gg----kVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa 491 (552)
..++|+||+|+||||++..||..+...+. .+..+.+..+.. .+ .+ .........+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~---------------~~----~g-~~~~~~~~~~~ 127 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG---------------QY----IG-HTAPKTKEVLK 127 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC---------------SS----TT-CHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh---------------hc----cc-ccHHHHHHHHH
Confidence 37899999999999999999988866433 444443322100 00 01 11122233343
Q ss_pred HHHhCCCCEEEEeCCCCC-------CChHHHHHHHHHHhhhhccccEEEEEEe
Q 008816 492 EATRNGSDVVLVDTAGRM-------QVIIEYYLFLLHIYLHTVCEHFVNIITF 537 (552)
Q Consensus 492 ~a~~~~~DvVIIDtpGr~-------~~~~~lm~eL~kl~~~~~~~~~~~ii~~ 537 (552)
.+ .+.+|+||+...+ .........|..+.........++.+.+
T Consensus 128 ~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~ 177 (309)
T 3syl_A 128 RA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY 177 (309)
T ss_dssp HH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC
T ss_pred hc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 33 4679999998765 3355566666665544333334444443
No 203
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.57 E-value=4e-05 Score=72.54 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=30.9
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
..+|. +|+|+||+||||||+++.|++.+...|..+.+++.|
T Consensus 22 ~~~g~--~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 22 DQKGC--VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp TSCCE--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCe--EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 34555 999999999999999999999988444333344444
No 204
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.56 E-value=0.00077 Score=67.26 Aligned_cols=97 Identities=22% Similarity=0.294 Sum_probs=58.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~ 495 (552)
..++|+||+|+||||+++.|+..+...++.+..++|..+..... ....+|.+.-..++. .......++. .
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~g~~~~~~~~~--~~~~~~~~~~---~ 117 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA-----VSRLIGAPPGYVGYE--EGGQLTEAVR---R 117 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH-----HHHHHCCCTTSTTTT--TCCHHHHHHH---H
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc-----HHHhcCCCCcccccc--ccchHHHHHH---h
Confidence 37999999999999999999999988888888888876543321 122233221111111 1011122222 2
Q ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 496 NGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 496 ~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
....+++||+...+. ......|.++..
T Consensus 118 ~~~~vl~lDEi~~l~--~~~~~~Ll~~le 144 (311)
T 4fcw_A 118 RPYSVILFDAIEKAH--PDVFNILLQMLD 144 (311)
T ss_dssp CSSEEEEEETGGGSC--HHHHHHHHHHHH
T ss_pred CCCeEEEEeChhhcC--HHHHHHHHHHHh
Confidence 456799999997653 344455555443
No 205
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.56 E-value=8.4e-05 Score=70.28 Aligned_cols=37 Identities=32% Similarity=0.223 Sum_probs=29.0
Q ss_pred cCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.+|. +|+|+|+|||||||+++.|++.+ |.+.+.+-+.
T Consensus 27 ~~g~--~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 27 EPTR--HVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp -CCC--EEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 3455 99999999999999999999887 5566554444
No 206
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.54 E-value=5.7e-05 Score=72.12 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=56.6
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee--ecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA--CDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~--~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a 493 (552)
+++.++|+.|+||||.+..++..+...|.+|+++. .|+ |.+. .. ...++++........ ++. +.+..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~-r~~~-~~---i~s~~g~~~~a~~~~-~~~----~i~~~- 77 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDN-RYSK-ED---VVSHMGEKEQAVAIK-NSR----EILKY- 77 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CE---EECTTSCEEECEEES-SST----HHHHH-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCc-cchH-HH---HHhhcCCceeeEeeC-CHH----HHHHH-
Confidence 39999999999999999999998888999999985 444 3221 10 122334332111111 111 22222
Q ss_pred HhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 494 TRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 494 ~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
...++|+|+|||+.... ...++.|..+.
T Consensus 78 ~~~~~dvViIDEaqfl~--~~~v~~l~~l~ 105 (191)
T 1xx6_A 78 FEEDTEVIAIDEVQFFD--DEIVEIVNKIA 105 (191)
T ss_dssp CCTTCSEEEECSGGGSC--THHHHHHHHHH
T ss_pred HhccCCEEEEECCCCCC--HHHHHHHHHHH
Confidence 12358999999998643 34466676664
No 207
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.51 E-value=0.0013 Score=64.08 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~ 449 (552)
.+|+|.|++||||||++..|+..+.. ++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 49999999999999999999999988 8887654
No 208
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.51 E-value=6.3e-05 Score=70.75 Aligned_cols=37 Identities=30% Similarity=0.297 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
..+.|.||+|+||||++..|+..+...+.++.++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 4889999999999999999999998888888877664
No 209
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.50 E-value=7.3e-05 Score=74.39 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=32.9
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~ 449 (552)
.+++++++.++.| ++|+||||+||||+++.|++.+. .+.|.+.
T Consensus 63 ~~l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 63 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 4566777776554 88999999999999999998875 3445444
No 210
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.50 E-value=0.00016 Score=73.00 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 380 SIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 380 ~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
..+...+.+.+..++... .....|.+|+|+||+||||||+++.|+..+. ..+..++.|.+|.
T Consensus 10 ~~~~~~~~~~~~~~l~~~------------~~~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGK------------KAVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQ 71 (287)
T ss_dssp HHHHHHHHHHHHHHHTTC------------CCCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHT
T ss_pred HHHHHHHHHHHHHHhccc------------cCCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHH
Confidence 556667777777777532 1233467999999999999999999987653 2345567887753
No 211
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.50 E-value=0.0015 Score=67.11 Aligned_cols=53 Identities=6% Similarity=-0.102 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEEecC
Q 008816 487 KEAIQEATRNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIITFRG 539 (552)
Q Consensus 487 r~aIa~a~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~~~~ 539 (552)
+.++++++..+|+++|+|+|+...+.......+.-|.........+.++++..
T Consensus 262 ~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~ 314 (339)
T 3qkt_A 262 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314 (339)
T ss_dssp HHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH
Confidence 45677777889999999999976665443322222222222233555566653
No 212
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.47 E-value=9.1e-05 Score=68.91 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=35.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+.+|+|+|++||||||+++.|+..+...|++|.+++.|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3499999999999999999999999988999988776643
No 213
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.47 E-value=0.00025 Score=65.09 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.+|+|+|++||||||+++.|++.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 499999999999999999999876
No 214
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.46 E-value=5.3e-05 Score=71.97 Aligned_cols=27 Identities=37% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
+|+ +++|+|||||||||+++.|++++.
T Consensus 3 ~g~--~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPR--PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --C--CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHhhCc
Confidence 455 899999999999999999999875
No 215
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.45 E-value=0.00018 Score=67.40 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=27.3
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
++++ |.+..|. .|+|+|+|||||||+++.|++..
T Consensus 17 ~l~~--~~~~~~~--~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 17 DIRH--LPSDTGI--EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SGGG--SSCSCSE--EEEEEECTTSSHHHHHTTTCCC-
T ss_pred CHhH--CCCCCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 4555 5566666 99999999999999999998755
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.45 E-value=0.00027 Score=69.56 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=32.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG 457 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g 457 (552)
.|.+|+|+|++||||||+++.|+..+. ..+.+++.|.+|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQ 71 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHh
Confidence 456999999999999999999998764 34566788887653
No 217
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.44 E-value=0.002 Score=69.04 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=37.8
Q ss_pred cccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 409 ~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
-+.+|. ++.|.|++|+||||++..||......|.+|+++....
T Consensus 193 Gl~~G~--liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 193 GYKRRN--FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SBCSSC--EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCCc--EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 356787 9999999999999999999988877788999998875
No 218
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.43 E-value=3.8e-05 Score=79.90 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=38.1
Q ss_pred cccccccccC--CCcEEEEEEcCCCCChhHHHHHHHHHHhhCC----ceEEE
Q 008816 403 LRDVHAAKEQ--RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK----VSVMM 448 (552)
Q Consensus 403 L~di~~~~~~--g~p~vI~lvG~nGvGKTTll~kLA~~l~~~g----gkVll 448 (552)
...|++.+.+ ++ .++|+|+|||||||+++.|++++.+.. |++.+
T Consensus 158 ~~~v~~~v~~~lg~--k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAK--TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCE--EEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhC--eEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 4567888888 87 999999999999999999999998877 77665
No 219
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.40 E-value=0.00067 Score=65.71 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=59.6
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHH-hhCC--ceEEEeeecCCcchHHHHHHHHHHHcCCcee----------ecC-
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQHK--VSVMMAACDTFRSGAVEQLRTHARRLQVPIF----------EKG- 477 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l-~~~g--gkVll~~~D~~r~ga~eqL~~~~~~l~v~~~----------~~~- 477 (552)
.|+ .++++|++|+||||++..+.... ...+ ..+.++-..+.|..+......++..++..+- ...
T Consensus 75 ~g~--~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 152 (235)
T 3llm_A 75 QNS--VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILP 152 (235)
T ss_dssp HCS--EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECC
T ss_pred cCC--EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccC
Confidence 466 89999999999999887766432 2222 2233333445565555544555544432210 000
Q ss_pred ------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChHH-HHHHHHHHhh
Q 008816 478 ------YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQVIIE-YYLFLLHIYL 524 (552)
Q Consensus 478 ------~~~dp~~iar~aIa~a~~~~~DvVIIDtpGr~~~~~~-lm~eL~kl~~ 524 (552)
.-..|..+.+ .+.. ...++++|||||+-.+..+.. ++..+..+..
T Consensus 153 ~~~~~Ivv~Tpg~l~~-~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 153 RPHASIMFCTVGVLLR-KLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp CSSSEEEEEEHHHHHH-HHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECHHHHHH-HHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 0013444433 2322 368899999999976533433 3355555553
No 220
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.39 E-value=0.0055 Score=75.26 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=61.9
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCce----eecCCCCCHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI----FEKGYEKDPAIV 485 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~----~~~~~~~dp~~i 485 (552)
+.+|. +|.|.|++|+||||++..+|..+...+++|++++.+.- .+|+. ++.+++.. +.. ..+...+
T Consensus 729 l~~G~--lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees----~~ql~--A~~lGvd~~~L~i~~--~~~leei 798 (1706)
T 3cmw_A 729 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA----LDPIY--ARKLGVDIDNLLCSQ--PDTGEQA 798 (1706)
T ss_dssp EETTS--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC----CCHHH--HHHTTCCGGGCEEEC--CSSHHHH
T ss_pred cCCCc--eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch----HHHHH--HHHcCCChhheEEec--CCcHHHH
Confidence 56777 99999999999999999999988888899999887653 23342 66666542 111 1122222
Q ss_pred HHHHHHH-HHhCCCCEEEEeCCCCCC
Q 008816 486 AKEAIQE-ATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 486 ar~aIa~-a~~~~~DvVIIDtpGr~~ 510 (552)
. ..+.+ ....++++|+||.-..+.
T Consensus 799 ~-~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 799 L-EICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp H-HHHHHHHHHTCCSEEEESCSTTCC
T ss_pred H-HHHHHHHHccCCCEEEEechhhhc
Confidence 2 22222 224789999999987665
No 221
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.36 E-value=7.7e-05 Score=69.97 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=25.9
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
+.+|. +|+|+||+||||||+++.|++.+.+
T Consensus 3 i~~g~--~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 3 NEKGL--LIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp -CCCC--EEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCC--EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 45676 9999999999999999999998744
No 222
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.36 E-value=0.00063 Score=73.73 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=45.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~ 496 (552)
-|+|+||+|+||||+++.||+.+. ..+..+.+..+.. .+ ........+..+..|...
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~---~~f~~is~~~~~~----------------~~----~g~~~~~~r~lf~~A~~~ 107 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEAN---VPFFHISGSDFVE----------------LF----VGVGAARVRDLFAQAKAH 107 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT---CCEEEEEGGGTTT----------------CC----TTHHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC---CCeeeCCHHHHHH----------------HH----hcccHHHHHHHHHHHHhc
Confidence 488999999999999999998652 3333333322110 00 001223345667777778
Q ss_pred CCCEEEEeCCCC
Q 008816 497 GSDVVLVDTAGR 508 (552)
Q Consensus 497 ~~DvVIIDtpGr 508 (552)
.|.+|+||++..
T Consensus 108 ~p~ILfIDEid~ 119 (476)
T 2ce7_A 108 APCIVFIDEIDA 119 (476)
T ss_dssp CSEEEEEETGGG
T ss_pred CCCEEEEechhh
Confidence 899999999854
No 223
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.36 E-value=0.00014 Score=67.70 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
.+++|+|||||||||+++.|++ +.++.+.+.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~ 34 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEG 34 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEH
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcc
Confidence 3899999999999999999986 4567776654
No 224
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.35 E-value=0.00018 Score=67.53 Aligned_cols=40 Identities=20% Similarity=0.060 Sum_probs=35.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+.+++|+|++||||||++..|+..+...|.+|.++..|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4589999999999999999999999988999999887753
No 225
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.35 E-value=0.00087 Score=68.38 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=55.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhC------CceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQH------KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~------ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar 487 (552)
.+..+.|.||+|+||||++..++..+... +..+..+.|..... ...-+......++..... .+.....+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~l~~~~~~--~~~~~~~~~~ 119 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET-PYRVASAIAEAVGVRVPF--TGLSVGEVYE 119 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS-HHHHHHHHHHHHSCCCCS--SCCCHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC-HHHHHHHHHHHhCCCCCC--CCCCHHHHHH
Confidence 34489999999999999999999877654 55566566544332 223334444555544321 2233434332
Q ss_pred HHHHHHHh--CCCCEEEEeCCCCCC
Q 008816 488 EAIQEATR--NGSDVVLVDTAGRMQ 510 (552)
Q Consensus 488 ~aIa~a~~--~~~DvVIIDtpGr~~ 510 (552)
.+..++. ..+.+|+||+...+.
T Consensus 120 -~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 120 -RLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp -HHHHHHTTSCSEEEEEEETTTHHH
T ss_pred -HHHHHHhccCCeEEEEEccHhhhc
Confidence 3333332 235599999998653
No 226
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.34 E-value=0.0045 Score=59.94 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=43.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
+..++|.||+|+||||++..||..+ +..+..+.+..+.. .+ ........+..+..+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~----------------~~----~~~~~~~~~~~~~~a~ 95 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVE----------------VI----GGLGAARVRSLFKEAR 95 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSS----------------SS----TTHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHh----------------hc----cChhHHHHHHHHHHHH
Confidence 3478899999999999999999865 33444444433211 00 0111222334455555
Q ss_pred hCCCCEEEEeCCCCC
Q 008816 495 RNGSDVVLVDTAGRM 509 (552)
Q Consensus 495 ~~~~DvVIIDtpGr~ 509 (552)
...+.+|+||+...+
T Consensus 96 ~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAV 110 (262)
T ss_dssp HTCSEEEEEECC---
T ss_pred hcCCeEEEEeCcchh
Confidence 667899999998765
No 227
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.34 E-value=0.00012 Score=67.69 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=28.7
Q ss_pred ccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC
Q 008816 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH 442 (552)
Q Consensus 404 ~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ 442 (552)
+++++.+.+| +.+|+|+||+||||++..|++.+...
T Consensus 18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3455555554 89999999999999999999887543
No 228
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.32 E-value=6.2e-05 Score=70.57 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCC---ceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHK---VSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~g---gkVll~~~D~~ 454 (552)
.+++|+|++||||||++..|++++.+.| |.|.+.+.+++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence 3899999999999999999999999984 55666555543
No 229
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.32 E-value=0.001 Score=66.19 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=46.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~ 495 (552)
..++|.||+|+||||+++.|+..+ +..+..+.+..... .+........+..+..+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~--------------------~~~~~~~~~~~~~~~~~~~ 111 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTS--------------------KYVGDGEKLVRALFAVARH 111 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSS--------------------SSCSCHHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhh--------------------cccchHHHHHHHHHHHHHH
Confidence 489999999999999999999865 33343333322100 0111233444555666667
Q ss_pred CCCCEEEEeCCCCC
Q 008816 496 NGSDVVLVDTAGRM 509 (552)
Q Consensus 496 ~~~DvVIIDtpGr~ 509 (552)
..+.+|+||++..+
T Consensus 112 ~~~~vl~iDEid~l 125 (297)
T 3b9p_A 112 MQPSIIFIDEVDSL 125 (297)
T ss_dssp TCSEEEEEETGGGT
T ss_pred cCCcEEEeccHHHh
Confidence 78899999998654
No 230
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.30 E-value=0.0015 Score=67.65 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=44.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
+..|+|.||+|+||||+++.||..+ +..+..+.+...... +........+..+..+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~--------------------~~g~~~~~~~~~~~~a~ 173 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK--------------------WVGEGEKMVRALFAVAR 173 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS--------------------STTHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc--------------------ccchHHHHHHHHHHHHH
Confidence 4489999999999999999999765 445554444321100 00111223344455555
Q ss_pred hCCCCEEEEeCCC
Q 008816 495 RNGSDVVLVDTAG 507 (552)
Q Consensus 495 ~~~~DvVIIDtpG 507 (552)
...+.+|+||+..
T Consensus 174 ~~~~~vl~iDEid 186 (357)
T 3d8b_A 174 CQQPAVIFIDEID 186 (357)
T ss_dssp HTCSEEEEEETHH
T ss_pred hcCCeEEEEeCch
Confidence 6778999999873
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.30 E-value=0.00029 Score=77.48 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=30.9
Q ss_pred ccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEE
Q 008816 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM 447 (552)
Q Consensus 404 ~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVl 447 (552)
.++++.+ +|. +++|+||||+||||+++.|++.+...-+.|.
T Consensus 100 ~~~~~~~-~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~ 140 (543)
T 3m6a_A 100 QKLTKSL-KGP--ILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140 (543)
T ss_dssp HHHSSSC-CSC--EEEEESSSSSSHHHHHHHHHHHHTCEEEEEC
T ss_pred HHhcccC-CCC--EEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 3444444 455 9999999999999999999999865444443
No 232
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.29 E-value=5.9e-05 Score=76.59 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=28.1
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE---eeecCC
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDTF 454 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll---~~~D~~ 454 (552)
.|+ +++|+||||||||||++.|++.+.+..|.|.+ .+.++.
T Consensus 168 ~ge--iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t 211 (301)
T 1u0l_A 168 KGK--ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT 211 (301)
T ss_dssp SSS--EEEEECSTTSSHHHHHHHHSTTCCCC-------------CC
T ss_pred cCC--eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCce
Confidence 466 99999999999999999999999999999988 555553
No 233
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.28 E-value=0.00013 Score=67.90 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=24.3
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
.|+ +++|+|||||||||+++.|++.+.
T Consensus 4 ~g~--~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRK--TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCC--EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHhhCC
Confidence 455 999999999999999999998875
No 234
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.25 E-value=0.00036 Score=79.86 Aligned_cols=108 Identities=20% Similarity=0.301 Sum_probs=66.8
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhh-C--CceEEEeeecCCcchHHHHHHHHHHHcCCceeec-C----------
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-H--KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK-G---------- 477 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-~--ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~-~---------- 477 (552)
.|+ +++++||||+||||++..++..... . +..|++. -+.|..+.++...++..+++.+... +
T Consensus 108 ~~~--~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl--~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~ 183 (773)
T 2xau_A 108 NNQ--IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACT--QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS 183 (773)
T ss_dssp HCS--EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEE--ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECC
T ss_pred CCC--eEEEECCCCCCHHHHHHHHHHHhccccCCCceEEec--CchHHHHHHHHHHHHHHhCCchhheecceeccccccC
Confidence 455 8999999999999988877654332 2 4445543 2456656555555655554332110 0
Q ss_pred -----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCC-CCCChHHHHHHHHHHh
Q 008816 478 -----YEKDPAIVAKEAIQEATRNGSDVVLVDTAG-RMQVIIEYYLFLLHIY 523 (552)
Q Consensus 478 -----~~~dp~~iar~aIa~a~~~~~DvVIIDtpG-r~~~~~~lm~eL~kl~ 523 (552)
....+..+.+..+......++++||||||- |+.+...++..+..+.
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHH
Confidence 011355566666665667899999999997 4555555556666554
No 235
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.24 E-value=0.00011 Score=71.68 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=34.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
.+++++++.++.| ++|+||||+||||+++.|++.+. .+.+.+.+
T Consensus 39 ~~~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 39 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 4667777777655 88999999999999999998775 44455443
No 236
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.24 E-value=0.00018 Score=66.46 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
.+|+|+|++||||||+++.|+..+.+.|..+...+.|
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 4999999999999999999999988777666655544
No 237
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.24 E-value=8.8e-05 Score=73.74 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=35.0
Q ss_pred ccccccccccccC---CCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 400 IDILRDVHAAKEQ---RKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 400 ~diL~di~~~~~~---g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
..+|++++|.+.+ |+ +|+|+|++||||||+++.|+..+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhcC
Confidence 4578899999998 88 999999999999999999998663
No 238
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.23 E-value=0.003 Score=68.32 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=36.8
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-CceEEEeeecC
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDT 453 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-ggkVll~~~D~ 453 (552)
+..|. ++.|.|++|+||||++..||...... |.+|+++..+.
T Consensus 239 l~~G~--l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 239 ARGGE--VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCTTC--EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred cCCCe--EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 56777 99999999999999999999887765 88999998875
No 239
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.23 E-value=0.0017 Score=62.14 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=34.7
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHH-HhhCCceEEEeeecC
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKVSVMMAACDT 453 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~-l~~~ggkVll~~~D~ 453 (552)
++.|. ++.|.|++|+||||++..+|.. ....+..|+++..+.
T Consensus 27 l~~G~--l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 27 FPEGT--TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EETTC--EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 46777 9999999999999999998865 455677898888775
No 240
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.21 E-value=0.00018 Score=72.98 Aligned_cols=43 Identities=28% Similarity=0.424 Sum_probs=34.4
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHHHHHhhCC--c-eEEEeeecCCc
Q 008816 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK--V-SVMMAACDTFR 455 (552)
Q Consensus 413 g~p~vI~lvG~nGvGKTTll~kLA~~l~~~g--g-kVll~~~D~~r 455 (552)
+.|.+|+|+|++||||||+++.|+.++.+.+ . .+.++..|.|-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 4567999999999999999999999998653 2 35555888763
No 241
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.20 E-value=0.00012 Score=70.98 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=31.3
Q ss_pred cCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.+|. +|+|+|++||||||+++.|+++ ++.|.+...+.
T Consensus 18 ~~g~--~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 18 TQPF--TVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CCCE--EEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCce--EEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4555 9999999999999999999987 77888877653
No 242
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.20 E-value=2.4e-05 Score=76.77 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=28.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
+++|+|||||||||++..|++.+.+..|.|.+.+.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 8899999999999999999999999999998877665
No 243
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.17 E-value=0.00055 Score=64.42 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=28.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
+.+|+|+|++||||||+++.|+..+ | ..+++.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCc
Confidence 4589999999999999999999876 2 2344566543
No 244
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.17 E-value=0.00095 Score=68.44 Aligned_cols=92 Identities=16% Similarity=0.231 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhC--------CceEEEeeecCCcchHHHHHHHHHHHc-CCceeecCCCCCHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQH--------KVSVMMAACDTFRSGAVEQLRTHARRL-QVPIFEKGYEKDPAIV 485 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~--------ggkVll~~~D~~r~ga~eqL~~~~~~l-~v~~~~~~~~~dp~~i 485 (552)
+..+.|.||+|+||||++..++..+... +..+..++|...+......+......+ +.+.-. .+.....+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~ 122 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPK--HGINLGEY 122 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCS--SSSCTHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCC--CCCCHHHH
Confidence 4489999999999999999999887554 666766665433211222233333332 333211 12222333
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 486 AKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 486 ar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
.. .+...+.....+|+||+...+
T Consensus 123 ~~-~l~~~l~~~~~vlilDEi~~l 145 (384)
T 2qby_B 123 ID-KIKNGTRNIRAIIYLDEVDTL 145 (384)
T ss_dssp HH-HHHHHHSSSCEEEEEETTHHH
T ss_pred HH-HHHHHhccCCCEEEEECHHHh
Confidence 32 222232222229999998643
No 245
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.15 E-value=0.00014 Score=74.04 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE---eeecC
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDT 453 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll---~~~D~ 453 (552)
.|+ +++|+||||||||||++.|+ .+.+..|.|.+ .+.++
T Consensus 164 ~G~--i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 164 EGF--ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred cCc--EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence 466 99999999999999999999 88888888887 55444
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.14 E-value=0.00019 Score=68.50 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=24.8
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
+|. +|+|+|||||||||++..|+..+.+
T Consensus 7 ~g~--~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGL--LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCC--EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCc--EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 455 9999999999999999999987754
No 247
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.11 E-value=0.00047 Score=64.75 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=33.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.+++|+|++|+||||++..|+..+...+.+|..+..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 48999999999999999999999988888888777654
No 248
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.10 E-value=0.0014 Score=67.56 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=53.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhC--CceEEEeeecC-CcchHHHHHHHHHHHcCCceee--cCCCCCHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDT-FRSGAVEQLRTHARRLQVPIFE--KGYEKDPAIVAKEAIQ 491 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~--ggkVll~~~D~-~r~ga~eqL~~~~~~l~v~~~~--~~~~~dp~~iar~aIa 491 (552)
++.|.||+|+||||++..++...... +++|++++..- ++. .+++++|+..-. .....+...+....+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~-------~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP-------AYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH-------HHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH-------HHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 68899999999999988888766654 78888877653 222 146777765211 0112233333122222
Q ss_pred H---HHhCCCCEEEEeCCCCC
Q 008816 492 E---ATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 492 ~---a~~~~~DvVIIDtpGr~ 509 (552)
. .....+++|+||.-..+
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 2 12457999999987654
No 249
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.10 E-value=0.00028 Score=74.26 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=36.0
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll 448 (552)
.+++++++.++.|+ +++|+||+|+||||+++.|++.+ ++.+..
T Consensus 157 ~~l~~~~~~i~~~~--~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKR--YWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCC--EEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHhcccccCCCC--EEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 45677788888888 99999999999999999999864 566654
No 250
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.09 E-value=0.00082 Score=62.38 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHK 443 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~g 443 (552)
.+.|.||+|+||||++..++..+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 488999999999999999998775443
No 251
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.08 E-value=0.00027 Score=77.91 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=36.0
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCc-eEEEeeecCC
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDTF 454 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~gg-kVll~~~D~~ 454 (552)
+.+|. +|+|+|+|||||||+++.|++.+.+.+| .+.+++.|..
T Consensus 366 ~~~G~--iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 366 ERQGF--TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGSCE--EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccce--EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 34666 9999999999999999999999988775 7876676654
No 252
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.07 E-value=0.0015 Score=64.48 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=43.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~ 496 (552)
.++|.||+|+||||+++.||..+ +..+..+.+..+... +........+..+..+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~ 109 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK--------------------FIGEGASLVKDIFKLAKEK 109 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC--------------------STTHHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh--------------------ccchHHHHHHHHHHHHHHc
Confidence 79999999999999999998765 344444433221100 0111122334455566667
Q ss_pred CCCEEEEeCCCC
Q 008816 497 GSDVVLVDTAGR 508 (552)
Q Consensus 497 ~~DvVIIDtpGr 508 (552)
.+.+|+||+...
T Consensus 110 ~~~vl~iDEid~ 121 (285)
T 3h4m_A 110 APSIIFIDEIDA 121 (285)
T ss_dssp CSEEEEEETTHH
T ss_pred CCeEEEEECHHH
Confidence 789999999854
No 253
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.07 E-value=0.00066 Score=72.36 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=25.1
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
.++++++| .|+|+|+||||||||++.|++...
T Consensus 25 ~vl~~vsf--------~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 25 SVKRGFEF--------TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp TCC-CCCE--------EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEecCCCE--------EEEEECCCCCcHHHHHHHHhCCCC
Confidence 35555555 359999999999999999998765
No 254
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=97.06 E-value=0.0077 Score=56.62 Aligned_cols=104 Identities=12% Similarity=0.175 Sum_probs=76.5
Q ss_pred eEEEeecCcEEEEeecccCCCCCCCcHHHHHHHhhhhcccCC----CceeeccCCCceeeEEEEecccceEEEEEecccc
Q 008816 4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL----ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRIL 79 (552)
Q Consensus 4 ~~~IftkgGiVLWs~~~~~~~~~~~~in~lI~~vlleer~~~----~~~~~~~~~~~y~lkw~~~ne~~Lvfv~vyq~il 79 (552)
..+.+.+|.+||..++.. . .....+.+.+| +|... .+|.+ ++|+.++...| |++|+++=.+-.
T Consensus 57 ~Ya~VArg~tiLAE~t~~----~-gnf~~va~~iL--~kip~~~~r~t~~~----~~y~fHyl~~d--gl~yl~i~D~~~ 123 (173)
T 4afi_A 57 LFAVVARGTTILAKHAWC----G-GNFLEVTEQIL--AKIPSENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDF 123 (173)
T ss_dssp EEEEEEETTEEEEEEESS----C-CCHHHHHHHHH--TTSCSSSEEEEEEE----TTEEEEEEEET--TEEEEEEEETTS
T ss_pred EEEEEECCCEEEEEccCC----C-CCHHHHHHHHH--HhCCCCCCeEEEEE----CCEEEEEEEEC--CEEEEEEECCcc
Confidence 356788999999975433 2 33457777777 34332 46788 99999998865 789999988887
Q ss_pred chhhHHHHHHHHHHHHHHhcCCcCC--CCcchHHHHHHHHHHH
Q 008816 80 HLLYVDDLLAMMKQSFSEIYDPKRT--DYSDFDEMFRQLRKEA 120 (552)
Q Consensus 80 ~l~yvd~ll~~v~~~F~~~y~~~~~--~~~~f~~~f~~~l~~~ 120 (552)
.-.-.=.||++|+.+|...|+.... .-..|...|...|++.
T Consensus 124 ~rr~aF~FLedI~~eF~~~yg~~~~ta~pya~~~eF~~~L~~~ 166 (173)
T 4afi_A 124 ERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQ 166 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHhchhhhhccCcchhHHHHHHHHHH
Confidence 7666667899999999999976432 2227888898888764
No 255
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.05 E-value=0.0005 Score=63.28 Aligned_cols=36 Identities=33% Similarity=0.392 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~ 451 (552)
.+|+|+|++||||||++..|+..+...|..+.++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 489999999999999999999988877777766653
No 256
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.04 E-value=0.0001 Score=75.50 Aligned_cols=37 Identities=32% Similarity=0.324 Sum_probs=23.9
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll 448 (552)
+.+|+ +++|+|+||||||||++.|++.+.+..|.|.+
T Consensus 170 ~~~G~--~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 170 HFQDK--TTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGTTS--EEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hcCCC--EEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 44677 99999999999999999999988888777765
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.04 E-value=0.00025 Score=64.70 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
+|+|+|++||||||+++.|++.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999998764
No 258
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.03 E-value=0.00029 Score=67.12 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=31.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHh-hCCceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~-~~ggkVll~~~D~~ 454 (552)
.+|+|+|++||||||+++.|+..+. ..|..+.+++.|.+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4999999999999999999999987 45656666665543
No 259
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.03 E-value=0.0017 Score=66.94 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=29.6
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~ 451 (552)
+..|. ++.|.||+|+||||++..++.. .|++|+++..
T Consensus 120 i~~gs--viLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 120 RYASG--MVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEESE--EEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CCCCc--EEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 34555 8899999999999999999875 5667777766
No 260
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.02 E-value=0.0011 Score=64.76 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
-++|+||+|+||||+++.|++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998763
No 261
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.01 E-value=0.0025 Score=79.18 Aligned_cols=90 Identities=19% Similarity=0.172 Sum_probs=58.0
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeec-CCCCCHHHH-HH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK-GYEKDPAIV-AK 487 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~-~~~~dp~~i-ar 487 (552)
+++|+ +|.|+||+|+||||++..++......|++|.+++++-- ..++. ++.+|+++-.- -...++.+. .+
T Consensus 1424 i~~g~--~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~----~~~l~--a~~~G~dl~~l~v~~~~~~E~~l~ 1495 (2050)
T 3cmu_A 1424 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA----LDPIY--ARKLGVDIDNLLCSQPDTGEQALE 1495 (2050)
T ss_dssp EETTS--EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC----CCHHH--HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc----cCHHH--HHHcCCCchhceeecCChHHHHHH
Confidence 44566 99999999999999999999888888999999987642 11222 44555432100 001223322 22
Q ss_pred HHHHHHHhCCCCEEEEeCCC
Q 008816 488 EAIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 488 ~aIa~a~~~~~DvVIIDtpG 507 (552)
..-..+....+++|+||+-.
T Consensus 1496 ~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1496 ICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHhcCCCCEEEEcChh
Confidence 22223445789999999973
No 262
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.00 E-value=0.0024 Score=67.56 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=65.3
Q ss_pred ccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhC--CceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHH
Q 008816 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPA 483 (552)
Q Consensus 406 i~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~--ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~ 483 (552)
+.+.+.+|+ .++|+|++|+||||++..|+++.... +-.+.++.++- |...+. .+.+.+...++.......|.
T Consensus 167 ~~~pi~rGQ--r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE-R~~Ev~---~~~~~~~~~vV~atadep~~ 240 (422)
T 3ice_A 167 LASPIGRGQ--RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE-RPEEVT---EMQRLVKGEVVASTFDEPAS 240 (422)
T ss_dssp HHSCCBTTC--EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS-CHHHHH---HHHTTCSSEEEEECTTSCHH
T ss_pred eeeeecCCc--EEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC-ChHHHH---HHHHHhCeEEEEeCCCCCHH
Confidence 445567888 99999999999999999999988764 33566677775 332222 23333323333333333332
Q ss_pred HHH---HHHHHHH---HhCCCCEEE-EeCCCC-----------------CCChHHHHHHHHHHhh
Q 008816 484 IVA---KEAIQEA---TRNGSDVVL-VDTAGR-----------------MQVIIEYYLFLLHIYL 524 (552)
Q Consensus 484 ~ia---r~aIa~a---~~~~~DvVI-IDtpGr-----------------~~~~~~lm~eL~kl~~ 524 (552)
... ..++..| ..++.||+| +|.-++ ...+..+...+..+..
T Consensus 241 ~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps~Gyp~~~~~~~~rl~e 305 (422)
T 3ice_A 241 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFG 305 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCSSSCBHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCCCCcCHHHHhhhHHHHH
Confidence 222 2333333 346778765 564321 2445566667777664
No 263
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.99 E-value=0.00037 Score=67.98 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
|.+|+|+|||||||||+++.|+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 449999999999999999999933
No 264
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0052 Score=63.11 Aligned_cols=105 Identities=5% Similarity=-0.030 Sum_probs=55.4
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-------CceEEEeeecCCcchHHHHHHHHHHHc-CCceeecCCCCCHH
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-------KVSVMMAACDTFRSGAVEQLRTHARRL-QVPIFEKGYEKDPA 483 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-------ggkVll~~~D~~r~ga~eqL~~~~~~l-~v~~~~~~~~~dp~ 483 (552)
.+.|..+.|.||+|+|||++++.++..+... ...+..+.|-..... ..-+....+.+ +.... .+ ...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~-~~~~~~I~~~L~g~~~~---~~-~~~ 116 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGM-DALYEKIWFAISKENLC---GD-ISL 116 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC---HHHHHHHHHHHSCCC-----CC-CCH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCH-HHHHHHHHHHhcCCCCC---ch-HHH
Confidence 3455589999999999999999999888643 224444454433221 11222233333 32211 11 112
Q ss_pred HHHHHHHHHH--HhCCCCEEEEeCCCCCCChHHHHHHHHHH
Q 008816 484 IVAKEAIQEA--TRNGSDVVLVDTAGRMQVIIEYYLFLLHI 522 (552)
Q Consensus 484 ~iar~aIa~a--~~~~~DvVIIDtpGr~~~~~~lm~eL~kl 522 (552)
......+... ....+-+|++|+.-++. ....+-.|-.+
T Consensus 117 ~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~ 156 (318)
T 3te6_A 117 EALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKW 156 (318)
T ss_dssp HHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhc
Confidence 2222223221 12445699999998776 44444444443
No 265
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.99 E-value=0.0031 Score=60.53 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=55.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC--CcchHHHHHHHHHHHcCCceeecCCC--CCH------HHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--FRSGAVEQLRTHARRLQVPIFEKGYE--KDP------AIVA 486 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~--~r~ga~eqL~~~~~~l~v~~~~~~~~--~dp------~~ia 486 (552)
.|.+.+.||.||||.+..+|......|.+|+++...- ...+... ..+.+++.+...+.+ .+. ...+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~----~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERN----LLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHH----HHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHH----HHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 5667778889999999999999899999999996554 2333333 223344444332211 111 1223
Q ss_pred HHHHHHHH----hCCCCEEEEeCCCC
Q 008816 487 KEAIQEAT----RNGSDVVLVDTAGR 508 (552)
Q Consensus 487 r~aIa~a~----~~~~DvVIIDtpGr 508 (552)
..++..+. ...||+||+|+.+.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTY 131 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 34444432 26799999999843
No 266
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.98 E-value=0.00055 Score=69.73 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=32.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh-hCCceEEEeeec
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACD 452 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~-~~ggkVll~~~D 452 (552)
.+.|.||+|+|||+++..|+..+. ..|.+|.++.+.
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 788999999999999999999888 888888877654
No 267
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.96 E-value=0.00064 Score=68.92 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
.++|.||+|+||||++..|+..+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998765
No 268
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.96 E-value=0.0016 Score=65.62 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
|..++|.||+|+|||+++..||..+ +..+..+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 5588889999999999999999877 44444443
No 269
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.95 E-value=0.0058 Score=62.37 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=45.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~ 495 (552)
+-|+|.||+|+||||+++.||..+. +..+..+.+.... ....+. .....+..+..+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~-------------------~~~~g~-~~~~~~~lf~~a~~ 103 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLV-------------------SKWLGE-SEKLVKNLFQLARE 103 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSC-------------------CSSCCS-CHHHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHH-------------------hhhhhH-HHHHHHHHHHHHHh
Confidence 4899999999999999999998762 3344444432210 000111 12334455566666
Q ss_pred CCCCEEEEeCCCCC
Q 008816 496 NGSDVVLVDTAGRM 509 (552)
Q Consensus 496 ~~~DvVIIDtpGr~ 509 (552)
..+.+|+||+...+
T Consensus 104 ~~~~vl~iDEid~l 117 (322)
T 1xwi_A 104 NKPSIIFIDEIDSL 117 (322)
T ss_dssp TSSEEEEEETTTGG
T ss_pred cCCcEEEeecHHHh
Confidence 78899999987543
No 270
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.94 E-value=0.0038 Score=58.31 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHK 443 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~g 443 (552)
..++|.||+|+||||++..++..+....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~ 73 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3889999999999999999998776543
No 271
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.94 E-value=0.00038 Score=65.81 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+.+|+|+|++||||||++..|+..+. .+.++..|.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 34999999999999999999997653 3666777754
No 272
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.89 E-value=0.00086 Score=73.07 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=33.2
Q ss_pred cccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 401 diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
.++.++++.++.| ++|+||||+||||+++.||+.+. .+-+.+.+.+
T Consensus 54 ~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~ 99 (499)
T 2dhr_A 54 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 99 (499)
T ss_dssp GGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred hhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhH
Confidence 3566677766554 88999999999999999998764 3344444333
No 273
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.87 E-value=0.00014 Score=71.69 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.8
Q ss_pred cCCCcEEEEEEcCCCCChhHHHHHHH
Q 008816 411 EQRKPYVVVFVGVNGVGKSTNLAKVA 436 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTll~kLA 436 (552)
..|. +|+|+||+||||||+++.|+
T Consensus 25 ~~g~--~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAP--VITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSC--EEEEECCTTSSHHHHHHHHH
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHH
Confidence 3555 99999999999999999999
No 274
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.85 E-value=0.0078 Score=59.13 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=29.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCce-EEEe
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVS-VMMA 449 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggk-Vll~ 449 (552)
.+|+|.|+.||||||.+..|+.++...+.+ +.+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 499999999999999999999999988888 4443
No 275
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.84 E-value=0.00072 Score=62.24 Aligned_cols=35 Identities=34% Similarity=0.358 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
.+|+|+|++||||||+++.|+..+...|..+.+++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 38999999999999999999998876654333333
No 276
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.84 E-value=0.00036 Score=72.92 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=28.2
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHh-hCCceEEEe
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMA 449 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~-~~ggkVll~ 449 (552)
.|+ +++|+|+||||||||++.|++.+. +..|.|.+.
T Consensus 214 ~G~--~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 214 TGR--ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNV 250 (358)
T ss_dssp TTS--EEEEECCTTSSHHHHHHHHHCCSSCCCCC-----
T ss_pred CCC--EEEEECCCCccHHHHHHHHhccccccccCCcccc
Confidence 466 999999999999999999999888 777777654
No 277
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.83 E-value=0.00039 Score=65.58 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=29.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~ 449 (552)
+|+|+|++||||||++..|+..+...|..|.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 799999999999999999999998777777654
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=0.00064 Score=65.25 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.1
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
.|+ +|+|+||+||||||+++.|+..+.
T Consensus 18 ~g~--~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRK--TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCC--EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCC--EEEEECcCCCCHHHHHHHHHhhCC
Confidence 555 999999999999999999998764
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.82 E-value=0.00056 Score=62.34 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
|.+|+|+|++||||||+++.|+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 280
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.81 E-value=0.0009 Score=65.58 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=33.5
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhC-----CceEEEeeecCC
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF 454 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~-----ggkVll~~~D~~ 454 (552)
.+.|.+|+|+|+.||||||+++.|+..+... +..+.++++|-|
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 3467899999999999999999999865432 556778888765
No 281
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.78 E-value=0.00071 Score=64.44 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.+|+|+|++||||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999876
No 282
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.76 E-value=0.00069 Score=74.81 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=34.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
++.+.|..|+||||++..||..+...|.+|+++++|+.
T Consensus 329 ~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 329 LIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred EEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 56667889999999999999999999999999999975
No 283
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.73 E-value=0.0024 Score=70.72 Aligned_cols=38 Identities=32% Similarity=0.291 Sum_probs=32.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
+++|.|++|+||||++..|+..+...+.+|++. +.+.+
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~-ApT~~ 243 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC-APTGK 243 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE-ESSHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe-cCcHH
Confidence 899999999999999999999998889898865 34433
No 284
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.71 E-value=0.00034 Score=71.77 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
..++|+||||+||||+++.||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999999987
No 285
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.70 E-value=0.0016 Score=63.24 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=52.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee--ecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA--CDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~--~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a 493 (552)
.+..++|+-|+||||.+..++..+...|.+|+++. .|. |.+... ...++++.+...... +.. +.+..+
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~-R~ge~~----i~s~~g~~~~a~~~~-~~~----~~~~~~ 98 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDN-RYSEED----VVSHNGLKVKAVPVS-ASK----DIFKHI 98 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC----------------------CCEEECS-SGG----GGGGGC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCC-cchHHH----HHhhcCCeeEEeecC-CHH----HHHHHH
Confidence 49999999999999999999998888999999985 333 332211 223333332211111 111 112111
Q ss_pred HhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 494 TRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 494 ~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
...+|+|+|||+-... ...++.|..+.
T Consensus 99 -~~~~dvViIDEaQF~~--~~~V~~l~~l~ 125 (214)
T 2j9r_A 99 -TEEMDVIAIDEVQFFD--GDIVEVVQVLA 125 (214)
T ss_dssp -CSSCCEEEECCGGGSC--TTHHHHHHHHH
T ss_pred -hcCCCEEEEECcccCC--HHHHHHHHHHh
Confidence 2359999999998643 23445565554
No 286
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.70 E-value=0.00085 Score=63.20 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
++|+|+|++||||||+++.|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 287
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.70 E-value=0.0053 Score=62.33 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=46.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
+.-++|.||+|+|||++++.||..+ +..+..+.+.. +... +........+..+..+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~-----------l~~~---------~~g~~~~~~~~~f~~a~ 107 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD-----------LVSK---------WMGESEKLVKQLFAMAR 107 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHH-----------HHTT---------TGGGHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHH-----------Hhhc---------ccchHHHHHHHHHHHHH
Confidence 3479999999999999999999865 34444443321 0000 00112333445566666
Q ss_pred hCCCCEEEEeCCCCC
Q 008816 495 RNGSDVVLVDTAGRM 509 (552)
Q Consensus 495 ~~~~DvVIIDtpGr~ 509 (552)
...+.+|+||+...+
T Consensus 108 ~~~~~vl~iDEid~l 122 (322)
T 3eie_A 108 ENKPSIIFIDQVDAL 122 (322)
T ss_dssp HTSSEEEEEECGGGG
T ss_pred hcCCeEEEechhhhh
Confidence 778899999997644
No 288
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.70 E-value=0.0056 Score=63.35 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=44.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~ 496 (552)
-|+|.||+|+||||+++.||..+ +..+..+.+. + +... ++ +. .....+..+..+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~-------~----l~~~----~~----g~-~~~~~~~~f~~a~~~ 142 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSS-------D----LVSK----WM----GE-SEKLVKQLFAMAREN 142 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHH-------H----HHSC----C--------CHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHH-------H----Hhhh----hc----ch-HHHHHHHHHHHHHHc
Confidence 68899999999999999999876 3344433322 1 0000 00 11 122334455566667
Q ss_pred CCCEEEEeCCCCCC
Q 008816 497 GSDVVLVDTAGRMQ 510 (552)
Q Consensus 497 ~~DvVIIDtpGr~~ 510 (552)
.+.+|+||+...+.
T Consensus 143 ~~~vl~iDEid~l~ 156 (355)
T 2qp9_X 143 KPSIIFIDQVDALT 156 (355)
T ss_dssp SSEEEEEECGGGGT
T ss_pred CCeEEEEechHhhc
Confidence 88999999986543
No 289
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.68 E-value=0.00049 Score=69.86 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHH-HhhCCceEEEe
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYW-LLQHKVSVMMA 449 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~-l~~~ggkVll~ 449 (552)
.|+|+|+||||||||+..|++. +.+..+ +.+.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~ 52 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGA 52 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-------------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccC
Confidence 4599999999999999999875 555555 4443
No 290
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.68 E-value=0.00054 Score=69.99 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH--------hhCCceEEEeeec
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL--------LQHKVSVMMAACD 452 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l--------~~~ggkVll~~~D 452 (552)
.+++|+|+|||||||+++.|++.. .++.|.|.+.+.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH
Confidence 489999999999999999999875 4455666655544
No 291
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.68 E-value=0.0039 Score=61.36 Aligned_cols=82 Identities=20% Similarity=0.092 Sum_probs=50.6
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee--ecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA--CDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~--~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a 493 (552)
.+..++|+-|+||||.+..++..+...|.+|+++. .|. |.+ .. + ..++|+.......... .+ .+..+
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg-~~-i---~sr~G~~~~a~~i~~~-~d----i~~~~ 88 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS-SS-F---CTHDRNTMEALPACLL-RD----VAQEA 88 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC----------------CEEEEESSG-GG----GHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch-HH-H---HhhcCCeeEEEecCCH-HH----HHHHh
Confidence 39999999999999999999988888899999986 554 444 22 2 2233443322111111 11 22222
Q ss_pred HhCCCCEEEEeCCCCCC
Q 008816 494 TRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 494 ~~~~~DvVIIDtpGr~~ 510 (552)
.++|+|+|||+-...
T Consensus 89 --~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 89 --LGVAVIGIDEGQFFP 103 (234)
T ss_dssp --TTCSEEEESSGGGCT
T ss_pred --ccCCEEEEEchhhhh
Confidence 679999999997764
No 292
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.66 E-value=0.013 Score=57.29 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=28.1
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhC----CceEEEe
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----KVSVMMA 449 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~----ggkVll~ 449 (552)
+|. +|+|.|+.||||||.+..|+.++... |.+|.+.
T Consensus 24 ~g~--~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGK--FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCC--EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCe--EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 455 99999999999999999999998876 8888654
No 293
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.63 E-value=0.013 Score=59.78 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
..+.|.||+|+||||++..|+..+.....-+.+.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 3899999999999999999999887544444444433
No 294
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.63 E-value=0.00085 Score=67.85 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=32.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
+.+|+|.|+.||||||+++.|+..+...+.++.++++|.|.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 45999999999999999999998777667778888888764
No 295
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.62 E-value=0.0055 Score=66.95 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=35.8
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 413 g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
..+.+|+|+|++|+||||+++.|+..+...+..+.++..|.+|
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 3467999999999999999999999887777777777777644
No 296
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.62 E-value=0.0011 Score=59.85 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=26.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
.+|+|+|++||||||++..|+..+. ..+++.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK-----YPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC-----CCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-----CeeecCccc
Confidence 4799999999999999999997653 234566654
No 297
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.61 E-value=0.001 Score=62.49 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
++|+|+|++||||||+++.|+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4899999999999999999998
No 298
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.61 E-value=0.0099 Score=73.07 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=61.8
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceee--cCCCCCHHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE--KGYEKDPAIVAK 487 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~--~~~~~dp~~iar 487 (552)
+++|. ++.|.|++|+||||++..++......|++|++++.+.-. +++ +++.+++..-. .....+...+..
T Consensus 380 l~~G~--lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~----~~~--~a~~lGvd~~~L~i~~~~~~e~~l~ 451 (1706)
T 3cmw_A 380 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL----DPI--YARKLGVDIDNLLCSQPDTGEQALE 451 (1706)
T ss_dssp EETTS--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC----CHH--HHHHTTCCGGGCEEECCSSHHHHHH
T ss_pred cCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch----HHH--HHHHcCCCHHHeEEcCCCCHHHHHH
Confidence 45777 999999999999999999998888889999999887522 222 25666654211 001123333322
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCC
Q 008816 488 EAIQEATRNGSDVVLVDTAGRMQ 510 (552)
Q Consensus 488 ~aIa~a~~~~~DvVIIDtpGr~~ 510 (552)
.+-......++++|+||....+.
T Consensus 452 ~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 452 ICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp HHHHHHHHTCCSEEEESCSTTCC
T ss_pred HHHHHHHhcCCCEEEECCHHHhh
Confidence 22122235789999999987654
No 299
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.60 E-value=0.0013 Score=59.85 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.+.+|+||||+||||++..|...+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999766
No 300
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.60 E-value=0.0096 Score=59.95 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=26.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
|.++.+.||+|+||||++..|+..+ +..+..+.+..
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~ 83 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD 83 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc
Confidence 3478888999999999999999776 44555555433
No 301
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.59 E-value=0.0014 Score=60.99 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=24.3
Q ss_pred ccccccCCCcEEEEEEcCCCCChhHHHHHHHHH
Q 008816 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 406 i~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
+++....+. +|+|+|++||||||+++.|+..
T Consensus 3 ~~~~~~~~~--~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGI--NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSC--EEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCC--EEEEECCCCCCHHHHHHHHHHh
Confidence 455555555 9999999999999999999976
No 302
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.58 E-value=0.0008 Score=62.70 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
...|+|+|+|||||||++..|++...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999998654
No 303
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.57 E-value=0.0083 Score=62.55 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=44.3
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~ 495 (552)
..++|.||+|+|||+++..||..+ +..+..+.|...... + . +.. ....+..+..+..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~-------~---~---------g~~-~~~~~~~~~~a~~ 205 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK-------Y---V---------GEG-EKLVRALFAVARE 205 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC--------------------------C-HHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc-------c---c---------chH-HHHHHHHHHHHHh
Confidence 489999999999999999998653 455655555432211 0 0 001 1223344555556
Q ss_pred CCCCEEEEeCCCCC
Q 008816 496 NGSDVVLVDTAGRM 509 (552)
Q Consensus 496 ~~~DvVIIDtpGr~ 509 (552)
..+.+|+||+...+
T Consensus 206 ~~~~il~iDEid~l 219 (389)
T 3vfd_A 206 LQPSIIFIDQVDSL 219 (389)
T ss_dssp SSSEEEEEETGGGG
T ss_pred cCCeEEEEECchhh
Confidence 77889999998543
No 304
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.57 E-value=0.0043 Score=62.16 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=27.9
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.+.|++|+|+|+.||||||+++.|+. + |. .++++|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~-l---g~--~~id~D~ 107 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN-L---GA--YIIDSDH 107 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH-H---TC--EEEEHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH-C---CC--cEEehhH
Confidence 45678999999999999999999984 2 33 3456664
No 305
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.56 E-value=0.0095 Score=66.37 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=37.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeecCCcchHHHHHHHHHHHcCCc
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~ 472 (552)
++.|.||+|+||||++..++..+.. .+.+|++.+ .+ ..|++++.......++.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a-~t--n~A~~~l~~~l~~~~~~ 250 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA-PS--NIAVDQLTEKIHQTGLK 250 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE-SS--HHHHHHHHHHHHTTTCC
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe-Cc--HHHHHHHHHHHHhcCCe
Confidence 6788999999999999999887765 566777654 23 34566665544444443
No 306
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.55 E-value=0.0022 Score=59.39 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=28.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~ 449 (552)
+|+|.|+.||||||++..|+..+...|..|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 689999999999999999999988878777644
No 307
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.54 E-value=0.00074 Score=69.94 Aligned_cols=25 Identities=36% Similarity=0.301 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
.+..|+|+|++||||||++..|++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999863
No 308
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.52 E-value=0.0024 Score=59.66 Aligned_cols=32 Identities=25% Similarity=0.615 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll 448 (552)
.+|+|+|++||||||+++.|+..+...| .|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE
Confidence 4899999999999999999999887665 5543
No 309
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.48 E-value=0.0079 Score=57.08 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=28.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
.++|+|+|+.||||||+++.|+..+ | +.++++|.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 4699999999999999999998754 3 455677754
No 310
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.48 E-value=0.0032 Score=61.48 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=32.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeec
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACD 452 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D 452 (552)
++.+|+|.|+.||||||++..|+.++.. .|.+|.+....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre 59 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE 59 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC
Confidence 3459999999999999999999999988 88887763333
No 311
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.47 E-value=0.0024 Score=60.02 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=29.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~ 449 (552)
+.+|+|+|+.||||||+++.|+..+...+..|.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 34999999999999999999999887777766443
No 312
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.47 E-value=0.0045 Score=58.02 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=28.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEE
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll 448 (552)
+.+|+|+|+.||||||+++.|+..+...+..+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 3499999999999999999999887766666643
No 313
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.47 E-value=0.0013 Score=62.18 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=24.3
Q ss_pred cCCCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
..|. +|+|+||+||||||++..|+..+.
T Consensus 10 ~~~~--~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIP--PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCC--CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCC--EEEEECCCCCCHHHHHHHHHHhCc
Confidence 3555 999999999999999999998763
No 314
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.47 E-value=0.0051 Score=70.68 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=44.6
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee-cCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC-DTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 488 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~-D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~ 488 (552)
+..+. .|+|+||+|+||||+++.||+.+. ..+..+.+ ++. + .+........+.
T Consensus 235 i~~~~--~vLL~Gp~GtGKTtLarala~~l~---~~~i~v~~~~l~---------------~------~~~g~~~~~l~~ 288 (806)
T 1ypw_A 235 VKPPR--GILLYGPPGTGKTLIARAVANETG---AFFFLINGPEIM---------------S------KLAGESESNLRK 288 (806)
T ss_dssp CCCCC--EEEECSCTTSSHHHHHHHHHHTTT---CEEEEEEHHHHS---------------S------SSTTHHHHHHHH
T ss_pred CCCCC--eEEEECcCCCCHHHHHHHHHHHcC---CcEEEEEchHhh---------------h------hhhhhHHHHHHH
Confidence 45555 899999999999999999998753 23333322 111 0 001111223344
Q ss_pred HHHHHHhCCCCEEEEeCCC
Q 008816 489 AIQEATRNGSDVVLVDTAG 507 (552)
Q Consensus 489 aIa~a~~~~~DvVIIDtpG 507 (552)
.+..+....+.++++|+..
T Consensus 289 vf~~a~~~~p~il~iDEid 307 (806)
T 1ypw_A 289 AFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp HHHHHHHHCSEEEEEESGG
T ss_pred HHHHHHhcCCcEEEeccHH
Confidence 5555656678899999973
No 315
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.46 E-value=0.0015 Score=68.25 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=27.5
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHHHH
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
++++++.+.+| +++|+||||+||||++..|++.
T Consensus 17 ~~~~~~~~~~g---~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 17 LAPGTLNFPEG---VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSEEEECCSE---EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeeEEEEcCC---eEEEECCCCCChhHHHHHHHHh
Confidence 45667777554 9999999999999999999973
No 316
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.45 E-value=0.01 Score=58.40 Aligned_cols=25 Identities=28% Similarity=0.163 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+..+.|.||+|+||||+++.|+..+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4588999999999999999999864
No 317
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.45 E-value=0.011 Score=73.55 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=76.1
Q ss_pred cccccc--ccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCce----ee
Q 008816 402 ILRDVH--AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI----FE 475 (552)
Q Consensus 402 iL~di~--~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~----~~ 475 (552)
.|+++. .-+++|+ ++.|+|++|+||||++..++......|.++++++++-- .++|. +..+|+.+ +.
T Consensus 1068 ~Ld~~lg~ggi~~g~--~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~----~~~L~--a~~~G~dl~~l~~~ 1139 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA----LDPIY--ARKLGVDIDNLLCS 1139 (2050)
T ss_dssp HHHHHHSSSSEETTS--EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC----CCHHH--HHHTTCCTTTCEEE
T ss_pred HHHHHhccCCcCCCc--EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcccc----HHHHH--HHHcCCChhHheee
Confidence 344444 2467777 99999999999999999999888888999999988752 33343 34554432 11
Q ss_pred cCCCCCHHHHHHHHHH-HHHhCCCCEEEEeCCCCCCChH----------------HHHHHHHHHhhhhccccEEEEEEec
Q 008816 476 KGYEKDPAIVAKEAIQ-EATRNGSDVVLVDTAGRMQVII----------------EYYLFLLHIYLHTVCEHFVNIITFR 538 (552)
Q Consensus 476 ~~~~~dp~~iar~aIa-~a~~~~~DvVIIDtpGr~~~~~----------------~lm~eL~kl~~~~~~~~~~~ii~~~ 538 (552)
+. +........+. ......+|+|+||.-+.+.... .+.+.|.+|....+....+.+..+.
T Consensus 1140 ~p---d~~e~~~~i~~~l~~~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~ 1216 (2050)
T 3cmu_A 1140 QP---DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1216 (2050)
T ss_dssp CC---SSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cC---cchHHHHHHHHHHHHhCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 11 12222211111 1224679999999966542211 1224466666655555555555433
No 318
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.45 E-value=0.0019 Score=59.65 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
|.+|+|+|++||||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4599999999999999999999766
No 319
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.43 E-value=0.012 Score=60.68 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=53.2
Q ss_pred cEEEEE--EcCCCCChhHHHHHHHHHHhhC------CceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHH
Q 008816 415 PYVVVF--VGVNGVGKSTNLAKVAYWLLQH------KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 486 (552)
Q Consensus 415 p~vI~l--vG~nGvGKTTll~kLA~~l~~~------ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~ia 486 (552)
+..+.| .|+.|+||||++..++..+... +..+..+.|.... .....+..+...++.+... .+.+...+.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~--~~~~~~~~~ 126 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP-NLYTILSLIVRQTGYPIQV--RGAPALDIL 126 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC-SHHHHHHHHHHHHTCCCCC--TTCCHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC-CHHHHHHHHHHHhCCCCCC--CCCCHHHHH
Confidence 346777 9999999999999999877653 4566666664322 2233444555555554321 122333332
Q ss_pred HHHHHHHH--hCCCCEEEEeCCCCC
Q 008816 487 KEAIQEAT--RNGSDVVLVDTAGRM 509 (552)
Q Consensus 487 r~aIa~a~--~~~~DvVIIDtpGr~ 509 (552)
..+...+ ...+-+|+||+.-.+
T Consensus 127 -~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 127 -KALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp -HHHHHHHHHHTCEEEEEEESTHHH
T ss_pred -HHHHHHHHhcCCeEEEEEeCHHHH
Confidence 2222222 245679999998643
No 320
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.41 E-value=0.00069 Score=70.13 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=23.4
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+|+++++.++ .|+|||.+||||||++..|.+
T Consensus 26 ~l~~i~~~lp-----~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 26 ALPTLWDSLP-----AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CC----CCCC-----EEEEECBTTSSHHHHHHHHHT
T ss_pred ccccccccCC-----EEEEECCCCCcHHHHHHHHhC
Confidence 5566665553 799999999999999999998
No 321
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.41 E-value=0.0043 Score=62.48 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=42.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~ 496 (552)
.++|.||+|+||||+++.||..+. ..+..+.+. +.+..+ ++-. . ...+..+..+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~-------~l~~~~---~g~~------~----~~~~~~f~~a~~~ 107 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGP-------ELLTMW---FGES------E----ANVREIFDKARQA 107 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHH-------HHHHHH---HTTC------T----THHHHHHHHHHHT
T ss_pred eEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhH-------HHHhhh---cCch------H----HHHHHHHHHHHhc
Confidence 899999999999999999998763 333333221 111111 1110 1 1123445556667
Q ss_pred CCCEEEEeCCC
Q 008816 497 GSDVVLVDTAG 507 (552)
Q Consensus 497 ~~DvVIIDtpG 507 (552)
.+.+|+||+..
T Consensus 108 ~p~il~iDEid 118 (301)
T 3cf0_A 108 APCVLFFDELD 118 (301)
T ss_dssp CSEEEEECSTT
T ss_pred CCeEEEEEChH
Confidence 78999999975
No 322
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.41 E-value=0.0031 Score=58.83 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
.+|+|+|+.||||||++..|+..+ .|..+....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 499999999999999999999876 234454443
No 323
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.41 E-value=0.0019 Score=59.43 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.+|+|+|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999765
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.40 E-value=0.0021 Score=59.14 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
|.+|+|+|++||||||++..|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 325
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.40 E-value=0.003 Score=58.18 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=28.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~ 449 (552)
+|+|+|+.||||||+++.|+..+...|..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 789999999999999999999887667666543
No 326
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0022 Score=71.59 Aligned_cols=103 Identities=24% Similarity=0.256 Sum_probs=47.6
Q ss_pred HHHHHhccCCcCChhchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCCCCCccchhHHHHHHHHHHHHHHh----
Q 008816 319 SMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL---- 394 (552)
Q Consensus 319 ~~~~~~~g~~~l~~~~l~~~l~~l~~~Ll~~~V~~~va~~l~~~v~~~l~g~~~~~f~~~~~~v~~~l~~~L~~il---- 394 (552)
.-|+.+.+ +++.++..++.++ .+.. +.+++.++..+.++++..+.+....+...+.+.+.++-
T Consensus 43 ~~~~~~~~---~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (611)
T 3izq_1 43 AQLQDYQG---WDNLSLKLALFDN-------NFDL---ESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQ 109 (611)
T ss_dssp HHHHHHHC---CCSSHHHHHHHHT-------TTCS---SHHHHHHHHTTCSSSCC-------------------------
T ss_pred HHHHHhcC---cchhHHHHHHHHh-------hccH---HHHHHHHHHHhccccccCCCChHHHHHHHHHHHHHhhccccc
Confidence 34444554 6777666554433 3333 67778888888888877777767666666666666550
Q ss_pred ----------------------------------------CCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHH
Q 008816 395 ----------------------------------------TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434 (552)
Q Consensus 395 ----------------------------------------~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~k 434 (552)
.+....++...+. .......|+|||..|+|||||+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~k~~lkV~ivG~~n~GKSTLin~ 186 (611)
T 3izq_1 110 RPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVK---SALPHLSFVVLGHVDAGKSTLMGR 186 (611)
T ss_dssp ---------------------------------------------------CC---CCCCCCEEEEECCSSSCHHHHHHH
T ss_pred ccchhcccccccccccccccccchhhhhhhhhhhhccccCCCCcchhHHHHHh---ccCCceEEEEEECCCCCHHHHHHH
Confidence 1111111111111 122345799999999999999999
Q ss_pred HHH
Q 008816 435 VAY 437 (552)
Q Consensus 435 LA~ 437 (552)
|.+
T Consensus 187 Ll~ 189 (611)
T 3izq_1 187 LLY 189 (611)
T ss_dssp HHS
T ss_pred HHH
Confidence 863
No 327
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.38 E-value=0.0013 Score=73.11 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=36.5
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~ 451 (552)
+++.+++.+..|+ .++|+||||+||||+++.|++.+.+..+...++.+
T Consensus 49 ~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 49 AVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp HHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred hHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 3445566667777 89999999999999999999988876633333333
No 328
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.37 E-value=0.0018 Score=59.26 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
.+|.|+|++||||||+++.|+..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999997653
No 329
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.36 E-value=0.019 Score=65.24 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=51.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~ 496 (552)
.++|+||+|+|||++++.|+..+...+..+..++|..|...... . . .....++. ..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~-----------~---------~-~~l~~~~~---~~ 578 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST-----------S---------G-GQLTEKVR---RK 578 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC-----------C-------------CHHHHH---HC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc-----------c---------c-chhhHHHH---hC
Confidence 69999999999999999999988766777776666543221100 0 0 00112222 35
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 497 GSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 497 ~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
.+.+|+||+...++ ......|.++.
T Consensus 579 ~~~vl~lDEi~~~~--~~~~~~Ll~~l 603 (758)
T 3pxi_A 579 PYSVVLLDAIEKAH--PDVFNILLQVL 603 (758)
T ss_dssp SSSEEEEECGGGSC--HHHHHHHHHHH
T ss_pred CCeEEEEeCccccC--HHHHHHHHHHh
Confidence 67899999998664 34444444444
No 330
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.36 E-value=0.002 Score=60.07 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCChhHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
..|+|+|+|||||||++..|++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999985
No 331
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.35 E-value=0.0024 Score=57.71 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhh-------CCceEEEeee
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQ-------HKVSVMMAAC 451 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~-------~ggkVll~~~ 451 (552)
..++|+|++|+||||++..++..+.. .+..+..+.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 37889999999999999999988765 3455555544
No 332
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=96.32 E-value=0.012 Score=57.25 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=31.9
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEe
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMA 449 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~ 449 (552)
++.+.|.|. +|+||||+...|+..+...|.+|...
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 457899999 89999999999999999999999875
No 333
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.30 E-value=0.0076 Score=53.88 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=28.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
-|.|.|++|+|||++++.|+......+..+. +.|..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 5789999999999999999987666666665 55543
No 334
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.29 E-value=0.0044 Score=58.24 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=52.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee--cCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--DTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~--D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
++.++|+.|+||||++..++..+...+.+|+++.. |. |.+. .++. .+.++....... .++.. .+..+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~-r~~~-~~i~---s~~g~~~~~~~~-~~~~~----~~~~~- 73 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDS-RYHS-TMIV---SHSGNGVEAHVI-ERPEE----MRKYI- 73 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CC-CEEC---C----CEECEEE-SSGGG----GGGGC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecccc-ccCc-ccEE---ecCCCceeeEEE-CCHHH----HHHHh-
Confidence 89999999999999998888877777888887632 22 2111 0000 111222110000 11111 11111
Q ss_pred hCCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 495 RNGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 495 ~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
..++|+|+|||+.... ..+++.|..+..
T Consensus 74 ~~~~dvviIDE~Q~~~--~~~~~~l~~l~~ 101 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFN--PSLFEVVKDLLD 101 (184)
T ss_dssp CTTEEEEEECCGGGSC--TTHHHHHHHHHH
T ss_pred cCCCCEEEEECcccCC--HHHHHHHHHHHH
Confidence 2468999999998653 236666666654
No 335
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.27 E-value=0.0046 Score=61.52 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
.+.|.||+|+||||++..++..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 3889999999999999999987654
No 336
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.26 E-value=0.0029 Score=56.66 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCChhHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKV 435 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kL 435 (552)
.+|+|+|++||||||++..|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 38999999999999999988
No 337
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.23 E-value=0.0042 Score=60.53 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=54.6
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee--ecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA--CDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~--~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a 493 (552)
.+..++|+-|+||||.+...+..+...+.+|+++. .|. |.+. .....+.|+..-..... ++..+. . .
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~-R~~~----~~I~Sr~G~~~~a~~v~-~~~di~----~-~ 97 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDD-RYHK----EKVVSHNGNAIEAINIS-KASEIM----T-H 97 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----------------CBTTBCCEEEEES-SGGGGG----G-S
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCC-cchh----hhHHHhcCCceeeEEeC-CHHHHH----H-H
Confidence 39999999999999976666777777788898874 454 2221 12334445443221111 111221 1 1
Q ss_pred HhCCCCEEEEeCCCCCCChHHHHHHHHHHh
Q 008816 494 TRNGSDVVLVDTAGRMQVIIEYYLFLLHIY 523 (552)
Q Consensus 494 ~~~~~DvVIIDtpGr~~~~~~lm~eL~kl~ 523 (552)
+..++|+|+|||+-.... .+++.|..+.
T Consensus 98 i~~~~dvV~IDEaQFf~~--~~v~~l~~la 125 (219)
T 3e2i_A 98 DLTNVDVIGIDEVQFFDD--EIVSIVEKLS 125 (219)
T ss_dssp CCTTCSEEEECCGGGSCT--HHHHHHHHHH
T ss_pred HhcCCCEEEEechhcCCH--HHHHHHHHHH
Confidence 136899999999976543 5666676665
No 338
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.23 E-value=0.003 Score=58.02 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+.+|+|+|++||||||+++.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999999765
No 339
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.23 E-value=0.0027 Score=58.47 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.+|+|+|++||||||++..|+..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999766
No 340
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.23 E-value=0.0028 Score=62.48 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.+|+|+||+||||||++..||..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 489999999999999999999765
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.22 E-value=0.0027 Score=58.75 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+.+|+|+|++||||||+++.|+..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3499999999999999999999766
No 342
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.22 E-value=0.003 Score=59.11 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.2
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
...+.+|+|+|+.||||||+++.|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4457799999999999999999998654
No 343
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.20 E-value=0.0061 Score=60.69 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
.+.|.||+|+||||++..++..+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 4889999999999999999987653
No 344
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.20 E-value=0.0028 Score=58.78 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.+|+|+|++||||||+++.|+..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 499999999999999999999876
No 345
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.18 E-value=0.009 Score=63.26 Aligned_cols=38 Identities=34% Similarity=0.356 Sum_probs=29.1
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 413 g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
..|.+|+|+|++||||||+++.|+..+ ...+++.|.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 293 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLG 293 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHH
Confidence 346799999999999999999987543 24456677664
No 346
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.18 E-value=0.0031 Score=58.67 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=27.5
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 413 g~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
++|.+|+|+|++||||||+++.|+.. | +.+++.|.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d~ 40 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLDA 40 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----C--CEEEcccH
Confidence 45779999999999999999999874 3 33446664
No 347
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0055 Score=65.60 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=45.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
|+-|+|.||+|+|||++++.||+.+. ..++.+.+... ... +........+..+..|.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~---~~f~~v~~s~l-------------------~~~-~vGese~~ir~lF~~A~ 271 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN---ATFLKLAAPQL-------------------VQM-YIGEGAKLVRDAFALAK 271 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGGGG-------------------CSS-CSSHHHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC---CCEEEEehhhh-------------------hhc-ccchHHHHHHHHHHHHH
Confidence 44789999999999999999998754 33433332210 111 11123345566677777
Q ss_pred hCCCCEEEEeCC
Q 008816 495 RNGSDVVLVDTA 506 (552)
Q Consensus 495 ~~~~DvVIIDtp 506 (552)
...|-+|+||+.
T Consensus 272 ~~aP~IifiDEi 283 (434)
T 4b4t_M 272 EKAPTIIFIDEL 283 (434)
T ss_dssp HHCSEEEEEECT
T ss_pred hcCCeEEeecch
Confidence 788999999985
No 348
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.18 E-value=0.0056 Score=68.07 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=28.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh----CCceEEEeeecCCc
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTFR 455 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~----~ggkVll~~~D~~r 455 (552)
++.+.|++|+||||+++.|...+.. .+.+|++. +.+.+
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~-APTg~ 207 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA-APTGK 207 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE-BSSHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE-eCChh
Confidence 8899999999999999998877753 34466553 44533
No 349
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.18 E-value=0.019 Score=65.98 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=37.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeecCCcchHHHHHHHHHHHcCCc
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~ 472 (552)
++.|.||+|+||||++..++..+.. .+.+|++.+ .+ ..|+++|.......++.
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a-~t--n~A~~~l~~~l~~~g~~ 426 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA-PS--NIAVDQLTEKIHQTGLK 426 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE-SS--HHHHHHHHHHHHTTTCC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc-Cc--HHHHHHHHHHHHHhCcc
Confidence 7789999999999999999887775 566777653 33 34566665554444444
No 350
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.17 E-value=0.0027 Score=67.26 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=25.5
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
+..++ +++|+||||+||||++..|++.+.+
T Consensus 23 ~~~~~--~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 23 FGESN--FTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp CTTCS--EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ecCCC--EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34455 9999999999999999999987654
No 351
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.17 E-value=0.0026 Score=66.45 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=27.2
Q ss_pred cccccCCCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 407 HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 407 ~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
++.+..|+...|+|+|++|+||||+++.||..+.
T Consensus 16 ~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 16 DNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3445567755799999999999999999997654
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.14 E-value=0.0036 Score=58.67 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
...|.+|+|+|++||||||+++.|+..+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445699999999999999999999866
No 353
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.13 E-value=0.003 Score=58.59 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
+|+|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 354
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.13 E-value=0.0082 Score=64.33 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=24.2
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
.+....+.|.||+|+||||+++.|+..+.
T Consensus 47 ~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 47 AGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 44444789999999999999999998763
No 355
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.12 E-value=0.016 Score=61.87 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=28.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCc-eEEEe
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMA 449 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~gg-kVll~ 449 (552)
.+.|.|+.|+||||++..++.++...+. .|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 7899999999999999999999988877 56554
No 356
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.11 E-value=0.0027 Score=58.25 Aligned_cols=24 Identities=42% Similarity=0.428 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
+|+|+|++||||||+++.||..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999997663
No 357
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.10 E-value=0.0048 Score=63.99 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
.+|+|+||+||||||++..||..+. +.++.+|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 4899999999999999999998764 566778765
No 358
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.10 E-value=0.0055 Score=58.87 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=29.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcch
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG 457 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~g 457 (552)
+|.|+||+||||+|.+..|+..+ +=+.|-..|.+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----g~~~istGdllR~~ 38 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----GFVHISTGDILREA 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----CCEEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCeEEcHHHHHHHH
Confidence 68899999999999999999765 23556667877753
No 359
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.09 E-value=0.015 Score=63.13 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=44.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
+.-++|.||+|+|||++++.|+..+ +..+..+.|..+ ... ++ .......+.++..|.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l-----------~~~----~~-----g~~~~~~~~~f~~A~ 294 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI-----------MSK----LA-----GESESNLRKAFEEAE 294 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH-----------HTS----CT-----THHHHHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh-----------hhh----hc-----chhHHHHHHHHHHHH
Confidence 3478999999999999999998765 455555544211 000 00 111223345666676
Q ss_pred hCCCCEEEEeCC
Q 008816 495 RNGSDVVLVDTA 506 (552)
Q Consensus 495 ~~~~DvVIIDtp 506 (552)
...+.+|+||+.
T Consensus 295 ~~~p~iLfLDEI 306 (489)
T 3hu3_A 295 KNAPAIIFIDEL 306 (489)
T ss_dssp HTCSEEEEEESH
T ss_pred hcCCcEEEecch
Confidence 777889999997
No 360
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0093 Score=63.73 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=45.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
|+=|+|.||+|+|||++++.||..+.. .++.+.+.. ++. .+........+..+..|.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~---~fi~v~~s~-------------------l~s-k~vGesek~ir~lF~~Ar 272 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSA---TFLRIVGSE-------------------LIQ-KYLGDGPRLCRQIFKVAG 272 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTC---EEEEEESGG-------------------GCC-SSSSHHHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCC---CEEEEEHHH-------------------hhh-ccCchHHHHHHHHHHHHH
Confidence 347899999999999999999987542 333332211 111 111223445567777787
Q ss_pred hCCCCEEEEeCC
Q 008816 495 RNGSDVVLVDTA 506 (552)
Q Consensus 495 ~~~~DvVIIDtp 506 (552)
...|-+|+||+.
T Consensus 273 ~~aP~IIfiDEi 284 (437)
T 4b4t_I 273 ENAPSIVFIDEI 284 (437)
T ss_dssp HTCSEEEEEEEE
T ss_pred hcCCcEEEEehh
Confidence 888999999974
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.05 E-value=0.0039 Score=60.60 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=30.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcc
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS 456 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ 456 (552)
+|++|.|+||+||||+|.+..|+..+ +=+.|-..|.+|.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~----g~~hIstGdllR~ 66 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF----HFNHLSSGDLLRA 66 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH----CCEEECHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH----CCceEcHHHHHHH
Confidence 46799999999999999999999765 2345555666654
No 362
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.021 Score=60.93 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=44.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
|+-|+|.||+|+|||++++.||..+. ..++.+.+..+ +.. +........+..+..|.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~---~~~~~v~~~~l-------------------~~~-~~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK---AAFIRVNGSEF-------------------VHK-YLGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT---CEEEEEEGGGT-------------------CCS-SCSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecchh-------------------hcc-ccchhHHHHHHHHHHHH
Confidence 34689999999999999999998763 33443332211 011 11122334466677777
Q ss_pred hCCCCEEEEeCC
Q 008816 495 RNGSDVVLVDTA 506 (552)
Q Consensus 495 ~~~~DvVIIDtp 506 (552)
...|-+|+||+.
T Consensus 263 ~~aP~IifiDEi 274 (428)
T 4b4t_K 263 ENAPSIIFIDEV 274 (428)
T ss_dssp HTCSEEEEEECT
T ss_pred HcCCCeeechhh
Confidence 788889999985
No 363
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.03 E-value=0.0051 Score=55.61 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
.+.|+||+|+||||++..++..+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999988765
No 364
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.02 E-value=0.0042 Score=59.20 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
+.+.+|+||||+||||++..|...+-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34999999999999999999987664
No 365
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.016 Score=61.99 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=46.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
|+-|+|.||+|+|||++++.||..+. ..++.+.+..+ +. .+........+..+..|.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~---~~~~~v~~s~l-------------------~s-k~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG---ANFIFSPASGI-------------------VD-KYIGESARIIREMFAYAK 271 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT---CEEEEEEGGGT-------------------CC-SSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEehhhh-------------------cc-ccchHHHHHHHHHHHHHH
Confidence 34689999999999999999998764 33443333211 01 111123344566777788
Q ss_pred hCCCCEEEEeCC
Q 008816 495 RNGSDVVLVDTA 506 (552)
Q Consensus 495 ~~~~DvVIIDtp 506 (552)
...|-+|+||+.
T Consensus 272 ~~~P~IifiDEi 283 (437)
T 4b4t_L 272 EHEPCIIFMDEV 283 (437)
T ss_dssp HSCSEEEEEECC
T ss_pred hcCCceeeeecc
Confidence 889999999986
No 366
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.99 E-value=0.006 Score=65.13 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=43.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~ 495 (552)
+-|+|.||+|+||||++..||..+ .+..+..+.+..+. ..+ .+- ... ..+..+..+..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~-------~~~---~g~------~~~----~~~~~f~~a~~ 225 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLV-------SKW---LGE------SEK----LVKNLFQLARE 225 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC-------------------------CCC----THHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHH-------hhh---cch------HHH----HHHHHHHHHHH
Confidence 478999999999999999999876 23444444433210 011 110 011 12334455556
Q ss_pred CCCCEEEEeCCCCC
Q 008816 496 NGSDVVLVDTAGRM 509 (552)
Q Consensus 496 ~~~DvVIIDtpGr~ 509 (552)
..+.+|+||+...+
T Consensus 226 ~~~~vl~iDEid~l 239 (444)
T 2zan_A 226 NKPSIIFIDEIDSL 239 (444)
T ss_dssp SCSEEEEESCTTTT
T ss_pred cCCeEEEEechHhh
Confidence 78899999998654
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.97 E-value=0.0027 Score=58.12 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=18.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
|.+|+|+|++||||||+++.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45999999999999999999986653
No 368
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.97 E-value=0.012 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
...|+|+|..||||||++..|.+
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 45789999999999999998875
No 369
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.96 E-value=0.0034 Score=66.36 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.2
Q ss_pred ccCCCcEEEEEEcCCCCChhHHHHHHHH
Q 008816 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 410 ~~~g~p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+..|. .++|||+||||||||++.|++
T Consensus 17 v~~g~--~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNL--KTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCC--EEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCC--EEEEECCCCCCHHHHHHHHHC
Confidence 34565 999999999999999999998
No 370
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.93 E-value=0.0057 Score=63.75 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=31.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~ 451 (552)
.++|+|++|+||||+++.|+..+...+++|.+++.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 68899999999999999999888888888888653
No 371
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.92 E-value=0.0016 Score=69.40 Aligned_cols=33 Identities=27% Similarity=0.185 Sum_probs=30.3
Q ss_pred ccccccccCCCcEEEEEEcCCCCChhHHHHHHHHH
Q 008816 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 404 ~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
+++++.+..+. .|+|||+||||||||++.|++.
T Consensus 148 ~~i~lelk~g~--~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLIA--DVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCSC--SEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCCC--EEEEECCCCCcHHHHHHHHHcC
Confidence 56889999998 9999999999999999999976
No 372
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.018 Score=58.52 Aligned_cols=97 Identities=8% Similarity=-0.013 Sum_probs=55.2
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHHHHHh-h--CCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHH
Q 008816 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLL-Q--HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (552)
Q Consensus 413 g~p~vI~lvG~nGvGKTTll~kLA~~l~-~--~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~a 489 (552)
|++..+.|.||+|+||||++..||..+. . ....+..++.+-. .-.++++ +..
T Consensus 16 ~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-~~~id~i------------------------r~l 70 (305)
T 2gno_A 16 SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-NIGIDDI------------------------RTI 70 (305)
T ss_dssp CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-CBCHHHH------------------------HHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-CCCHHHH------------------------HHH
Confidence 3355899999999999999999986421 1 1122333222100 0012222 233
Q ss_pred HHHHH----hCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEE
Q 008816 490 IQEAT----RNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIIT 536 (552)
Q Consensus 490 Ia~a~----~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~ 536 (552)
+..+. ..++.+||||++-++. ....+.|.+....+.....+.+++
T Consensus 71 i~~~~~~p~~~~~kvviIdead~lt--~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 71 KDFLNYSPELYTRKYVIVHDCERMT--QQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHTSCCSSSSSEEEEETTGGGBC--HHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred HHHHhhccccCCceEEEeccHHHhC--HHHHHHHHHHHhCCCCCeEEEEEE
Confidence 33221 2356899999998764 344566777776665555555554
No 373
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.90 E-value=0.015 Score=59.13 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQH 442 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ 442 (552)
..+.|.||.|+||||++..++..+...
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 378999999999999999999887644
No 374
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.89 E-value=0.0048 Score=58.77 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=22.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+..|+|+|++||||||+++.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 375
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.88 E-value=0.0039 Score=59.50 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
|..|+|+|++||||||+++.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999997764
No 376
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=95.88 E-value=0.034 Score=54.79 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=32.3
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
++.+.|.|. +|+|||++...|+..+...|.+|.+.-
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 358999999 999999999999999999999998763
No 377
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.87 E-value=0.0048 Score=58.61 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+.+|+|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999986
No 378
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.86 E-value=0.0051 Score=56.48 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.+|+|+|++||||||++..|+..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999765
No 379
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.86 E-value=0.0082 Score=57.88 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=30.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEe
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~ 449 (552)
.+|+|.|+.||||||.+..|+.++...|..|.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3999999999999999999999999888888654
No 380
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=95.84 E-value=0.026 Score=55.97 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=32.2
Q ss_pred cEEEEEEcC-CCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 415 p~vI~lvG~-nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
++.+.|.|. +|+||||+...|+..+...|.+|...-
T Consensus 26 m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 26 MTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 458999999 799999999999999999999998763
No 381
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.83 E-value=0.0044 Score=56.17 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
++|+|+|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999766
No 382
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.83 E-value=0.014 Score=60.28 Aligned_cols=34 Identities=18% Similarity=0.415 Sum_probs=26.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.+.|+||+|+||||+++.||..+ +..+..++|..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 68899999999999999999876 44455555443
No 383
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.83 E-value=0.0039 Score=56.26 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
..|+|+|++||||||++..|++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999986
No 384
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.009 Score=63.33 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=44.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHhC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~~ 496 (552)
-|+|.||+|+|||++++.||+.+.. .++.+.+.. ++.. +........+..+..|...
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~---~f~~v~~s~-------------------l~sk-~vGese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDC---KFIRVSGAE-------------------LVQK-YIGEGSRMVRELFVMAREH 240 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTC---EEEEEEGGG-------------------GSCS-STTHHHHHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCC---CceEEEhHH-------------------hhcc-ccchHHHHHHHHHHHHHHh
Confidence 5889999999999999999987542 333332211 0111 1112334456777788888
Q ss_pred CCCEEEEeCC
Q 008816 497 GSDVVLVDTA 506 (552)
Q Consensus 497 ~~DvVIIDtp 506 (552)
.|-+|+||+.
T Consensus 241 aP~IIFiDEi 250 (405)
T 4b4t_J 241 APSIIFMDEI 250 (405)
T ss_dssp CSEEEEEESS
T ss_pred CCceEeeecc
Confidence 8999999985
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.79 E-value=0.0045 Score=59.33 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+.+|+|+|++||||||+++.|+..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999999755
No 386
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.76 E-value=0.017 Score=55.65 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=29.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCc-eEEEe
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMA 449 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~gg-kVll~ 449 (552)
+|+|.|+.||||||.+..|+.++...|. .|.+.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 8999999999999999999999998887 66443
No 387
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.75 E-value=0.016 Score=57.25 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=27.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
+..+.|+||+|+||||+++.|+..+ +..+..+.|..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 3478899999999999999999877 34455555543
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.75 E-value=0.0056 Score=60.12 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
|.+|+|+||+||||||++..|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999999766
No 389
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.73 E-value=0.046 Score=55.72 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=59.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHc--CCceeecC--CCCCHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--QVPIFEKG--YEKDPAIVAKEAI 490 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l--~v~~~~~~--~~~dp~~iar~aI 490 (552)
+..+.|.||.|+||||++..+|..+....... ...|..- ...+.+.... ++-.+... ........++..+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c-----~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGHC-----RGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVT 97 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSCS-----HHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHH
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCCC-----HHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHH
Confidence 34799999999999999999998876543210 0112211 1011111111 11112111 0111223334444
Q ss_pred HHHH----hCCCCEEEEeCCCCCCChHHHHHHHHHHhhhhccccEEEEEE
Q 008816 491 QEAT----RNGSDVVLVDTAGRMQVIIEYYLFLLHIYLHTVCEHFVNIIT 536 (552)
Q Consensus 491 a~a~----~~~~DvVIIDtpGr~~~~~~lm~eL~kl~~~~~~~~~~~ii~ 536 (552)
..+. ..++.+||||++-.+. ......|.+....+.....+.+++
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~--~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLT--DAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBC--HHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred HHHhhccccCCcEEEEECchhhcC--HHHHHHHHHHhcCCCCCeEEEEEe
Confidence 4432 2457899999998664 344556666665554444444443
No 390
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.73 E-value=0.0047 Score=56.84 Aligned_cols=23 Identities=43% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+|+|+|++||||||+++.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999765
No 391
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.039 Score=63.41 Aligned_cols=53 Identities=28% Similarity=0.447 Sum_probs=36.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeecCCcchHHHHHHHHHHHcCCc
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~ 472 (552)
+++|.||+|+||||++..+...+.. .+.+|++.+. ...|++++.......++.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~---tn~A~d~l~~rL~~~g~~ 430 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAP---SNVAVDHLAAKLRDLGLK 430 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEES---SHHHHHHHHHHHHHTTCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcC---cHHHHHHHHHHHHhhCcc
Confidence 6788999999999999988876654 5778887642 334555555444344433
No 392
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.68 E-value=0.0086 Score=61.68 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=26.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
+++|+|+||+||||||++..||..+. ..++++|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP-----CELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccc
Confidence 35899999999999999999997653 44556654
No 393
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.68 E-value=0.0052 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+..|+|+|++||||||++..|++
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 394
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.68 E-value=0.0045 Score=61.72 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=26.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
|.+|+|+|++||||||+++.|+..+ .+ +.+++.|.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~--~~--~~~i~~D~~ 37 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN--PG--FYNINRDDY 37 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS--TT--EEEECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC--CC--cEEecccHH
Confidence 4589999999999999999998732 12 344455543
No 395
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.66 E-value=0.0014 Score=64.23 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
-++|.||+|+||||++..||..+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC
Confidence 477999999999999999998763
No 396
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.64 E-value=0.024 Score=53.75 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=36.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA 466 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~ 466 (552)
.|+|=|+-||||||.+..|+.+|...|.+|.+.... ......+.++.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP-~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP-GGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS-CSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCCcHHHHHHHHh
Confidence 577889999999999999999999999988776443 3333445455443
No 397
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.64 E-value=0.028 Score=64.50 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=46.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
|+-|+|.||+|+|||++++.||..+ +..+..+.+. + .++ .+........+.++..|.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~-------~-------l~s------k~~gese~~lr~lF~~A~ 294 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP-------E-------IMS------KLAGESESNLRKAFEEAE 294 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHH-------H-------HHS------SCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhH-------H-------hhc------ccchHHHHHHHHHHHHHH
Confidence 5579999999999999999999654 3444444321 1 100 011123344567777887
Q ss_pred hCCCCEEEEeCC
Q 008816 495 RNGSDVVLVDTA 506 (552)
Q Consensus 495 ~~~~DvVIIDtp 506 (552)
...|-+|+||+.
T Consensus 295 ~~~PsIIfIDEi 306 (806)
T 3cf2_A 295 KNAPAIIFIDEL 306 (806)
T ss_dssp TSCSEEEEEESG
T ss_pred HcCCeEEEEehh
Confidence 888999999985
No 398
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.63 E-value=0.04 Score=63.56 Aligned_cols=97 Identities=22% Similarity=0.294 Sum_probs=56.0
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~ 495 (552)
..++|+||+|+|||++++.|+..+...+..+..++|..+...... .+.+|.+.-..++ ........++. .
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~-----s~l~g~~~~~~G~--~~~g~l~~~~~---~ 658 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV-----SRLIGAPPGYVGY--EEGGQLTEAVR---R 658 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG-----GGC----------------CHHHHHH---H
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH-----HHHcCCCCCCcCc--cccchHHHHHH---h
Confidence 378999999999999999999998877777777777655432110 1111111000011 11011112222 3
Q ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 496 NGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 496 ~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
..+.+|+||+...++ ......|.++..
T Consensus 659 ~~~~vl~lDEi~~l~--~~~~~~Ll~~l~ 685 (854)
T 1qvr_A 659 RPYSVILFDEIEKAH--PDVFNILLQILD 685 (854)
T ss_dssp CSSEEEEESSGGGSC--HHHHHHHHHHHT
T ss_pred CCCeEEEEecccccC--HHHHHHHHHHhc
Confidence 557899999998654 455556666554
No 399
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.63 E-value=0.0074 Score=67.87 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=24.5
Q ss_pred cCCCcEEEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
..++ .|+|+|++|+|||||+..|++....
T Consensus 7 ~~~~--~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 7 AMIR--TVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp CCEE--EEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCc--EEEEECCCCChHHHHHHHHHHhcCC
Confidence 3444 9999999999999999999977643
No 400
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.60 E-value=0.0077 Score=58.81 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.|.+|+|+|++||||||+++.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46699999999999999999999765
No 401
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.60 E-value=0.0069 Score=56.12 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=20.1
Q ss_pred cccccccccCCCcEEEEEEcCCCCChhHHHHHHHH
Q 008816 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 403 L~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
++++++..+. ..|+|+|++||||||++..|.+
T Consensus 14 l~~~~~~~~~---~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKH---GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -------------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCc---cEEEEECCCCCCHHHHHHHHhc
Confidence 3445554333 3789999999999999999986
No 402
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.57 E-value=0.0085 Score=57.88 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+.+|+|+|++||||||+++.|+..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3499999999999999999999755
No 403
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.57 E-value=0.028 Score=56.71 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
.++|.||+|+||||++..|+..+ +..+..+.+.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~ 89 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEM---SANIKTTAAP 89 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHh---CCCeEEecch
Confidence 68899999999999999998764 3444444443
No 404
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.51 E-value=0.0082 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
+.+|+|+|+.||||||+++.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34899999999999999999997653
No 405
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.014 Score=53.40 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
...|+|+|++||||||++..|++.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999863
No 406
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.44 E-value=0.053 Score=54.16 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=24.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D 452 (552)
+++|.|+.|+||||++..++..+ + +.++.+.
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~ 63 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNER---P--GILIDCR 63 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHc---C--cEEEEee
Confidence 89999999999999999998654 2 5555554
No 407
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.068 Score=57.56 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~ 494 (552)
|+-|+|.||+|+|||++++.||..+.. .++.+.+.. ++.. +........+..+..|.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~---~fi~vs~s~-------------------L~sk-~vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDA---TFIRVIGSE-------------------LVQK-YVGEGARMVRELFEMAR 299 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTC---EEEEEEGGG-------------------GCCC-SSSHHHHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCC---CeEEEEhHH-------------------hhcc-cCCHHHHHHHHHHHHHH
Confidence 346889999999999999999987643 333332211 1111 11123345567777788
Q ss_pred hCCCCEEEEeCCC
Q 008816 495 RNGSDVVLVDTAG 507 (552)
Q Consensus 495 ~~~~DvVIIDtpG 507 (552)
...|-+|+||+.-
T Consensus 300 ~~aP~IIfiDEiD 312 (467)
T 4b4t_H 300 TKKACIIFFDEID 312 (467)
T ss_dssp HTCSEEEEEECCT
T ss_pred hcCCceEeecccc
Confidence 8889999999863
No 408
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.41 E-value=0.005 Score=61.13 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQH 442 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ 442 (552)
.+.|.||+|+||||++..++..+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~ 65 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCC
Confidence 38899999999999999999877543
No 409
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.41 E-value=0.0095 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l 439 (552)
+|+|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999866
No 410
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.39 E-value=0.0094 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.|+|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 411
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.37 E-value=0.0086 Score=57.09 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
..|+|+|++||||||+++.|+..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999876
No 412
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.34 E-value=0.01 Score=55.30 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=25.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
+|+|+|++||||||++..|+..+. +.+++.|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-----~~~~d~d~ 35 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-----VPYLSSGL 35 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----Cceeccch
Confidence 899999999999999999998663 34445554
No 413
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.33 E-value=0.066 Score=58.35 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=48.8
Q ss_pred CCcEEEEEEcCCCCChhHHHHHHHHHH---hh-CCceEEEeeecCCc-chHHHHHHHHHHHcCCce-eecCCCCCHHHHH
Q 008816 413 RKPYVVVFVGVNGVGKSTNLAKVAYWL---LQ-HKVSVMMAACDTFR-SGAVEQLRTHARRLQVPI-FEKGYEKDPAIVA 486 (552)
Q Consensus 413 g~p~vI~lvG~nGvGKTTll~kLA~~l---~~-~ggkVll~~~D~~r-~ga~eqL~~~~~~l~v~~-~~~~~~~dp~~ia 486 (552)
+.+.+|+|+|+.|+||||++..++... .. -...|.++..+... ......+...+..++... .......+...+.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAK 224 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHH
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHH
Confidence 345699999999999999999987432 11 22345555554432 122334444444443211 1111122333332
Q ss_pred HHHHHHHHhC--CCCEEEEeCC
Q 008816 487 KEAIQEATRN--GSDVVLVDTA 506 (552)
Q Consensus 487 r~aIa~a~~~--~~DvVIIDtp 506 (552)
..+...+.. .+=+||+|-.
T Consensus 225 -~~l~~~l~~~~~~~LLVLDdv 245 (591)
T 1z6t_A 225 -DRLRILMLRKHPRSLLILDDV 245 (591)
T ss_dssp -HHHHHHHHHTCTTCEEEEEEE
T ss_pred -HHHHHHHccCCCCeEEEEeCC
Confidence 233333332 4678899976
No 414
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.33 E-value=0.027 Score=62.80 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=39.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCcee
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~ 474 (552)
+..|.||+|+||||++..+...+...+.+|++.+. ...|++.+.......+..++
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~---TN~AvD~i~erL~~~~~~il 261 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP---SNIAVDNLVERLALCKQRIL 261 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES---SHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC---chHHHHHHHHHHHhcCCceE
Confidence 67788999999999999998888888889887643 23456655443333444443
No 415
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.33 E-value=0.011 Score=55.88 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=42.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeec-CCcchHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHHHh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-TFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D-~~r~ga~eqL~~~~~~l~v~~~~~~~~~dp~~iar~aIa~a~~ 495 (552)
+|.|+|+.||||||++..|+.. +.+++++++. .+...-.+++..|..+-+-...-.....+.... +.. ..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~----l~~-~~ 71 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTL----ITA-DL 71 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGT----SCT-TS
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHH----HHh-hc
Confidence 3789999999999999998843 5556555553 333333344444543322111111111221111 211 11
Q ss_pred CCCCEEEEeCCCC
Q 008816 496 NGSDVVLVDTAGR 508 (552)
Q Consensus 496 ~~~DvVIIDtpGr 508 (552)
...++||||+-|.
T Consensus 72 ~~~~~VLvDclt~ 84 (180)
T 1c9k_A 72 APDDAILLECITT 84 (180)
T ss_dssp CTTCEEEEECHHH
T ss_pred ccCCeEEEcCHHH
Confidence 2348999999864
No 416
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.32 E-value=0.013 Score=60.19 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=26.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
|.+|+|+||+||||||++..||..+. ..++.+|.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP-----VELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC-----CcEEeccc
Confidence 56899999999999999999997642 23455553
No 417
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.30 E-value=0.034 Score=64.10 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh-------CCceEEEeee
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ-------HKVSVMMAAC 451 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~-------~ggkVll~~~ 451 (552)
.++|+||+|+||||++..||..+.. .+..+..+++
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 5789999999999999999988755 2556665554
No 418
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.27 E-value=0.19 Score=56.74 Aligned_cols=92 Identities=21% Similarity=0.351 Sum_probs=51.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecCCC-CCHHHHHHHHHHHHHh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE-KDPAIVAKEAIQEATR 495 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~~~-~dp~~iar~aIa~a~~ 495 (552)
.++|+||+|+|||++++.|+..+ +..+..++|..+.... ...+.+|.+ .+|. .+.......++. .
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~-----~~~~l~g~~---~g~~g~~~~~~l~~~~~---~ 555 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERH-----TVSRLIGAP---PGYVGFDQGGLLTDAVI---K 555 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSS-----CCSSSCCCC---SCSHHHHHTTHHHHHHH---H
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchh-----hHhhhcCCC---CCCcCccccchHHHHHH---h
Confidence 78999999999999999999887 4555555554432210 001111211 0110 000011122332 3
Q ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHhh
Q 008816 496 NGSDVVLVDTAGRMQVIIEYYLFLLHIYL 524 (552)
Q Consensus 496 ~~~DvVIIDtpGr~~~~~~lm~eL~kl~~ 524 (552)
..+.+|+||+...++ ......|.++..
T Consensus 556 ~~~~vl~lDEi~~~~--~~~~~~Ll~~le 582 (758)
T 1r6b_X 556 HPHAVLLLDEIEKAH--PDVFNILLQVMD 582 (758)
T ss_dssp CSSEEEEEETGGGSC--HHHHHHHHHHHH
T ss_pred CCCcEEEEeCccccC--HHHHHHHHHHhc
Confidence 567899999998665 345555555543
No 419
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.26 E-value=0.0094 Score=54.34 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
..|+|+|++||||||++..|++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 420
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.25 E-value=0.05 Score=54.30 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
..++|.||+|+||||++..|+..+ +..+..+.|..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~ 73 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPA 73 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccc
Confidence 368899999999999999999766 34454444443
No 421
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.24 E-value=0.018 Score=61.86 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
-++|+||+|+||||++..||..+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999988754
No 422
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.22 E-value=0.011 Score=65.99 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=34.8
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
++.+|.|+|++||||||+++.|+..+...|..+...+.|..|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 456999999999999999999999988777777776665443
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.21 E-value=0.011 Score=56.88 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
+..|+|+|+.||||||++..|+..+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 424
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.21 E-value=0.01 Score=56.15 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.|+|+|++||||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998654
No 425
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.20 E-value=0.016 Score=61.91 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
+-++|.||+|+||||++..||..+..
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 37899999999999999999988754
No 426
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.17 E-value=0.052 Score=55.75 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~ 451 (552)
..++|+||+|+||||+++.||..+ +..+..++|
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 378999999999999999999877 344444433
No 427
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.14 E-value=0.012 Score=56.40 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.|+|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999776
No 428
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.12 E-value=0.0087 Score=56.71 Aligned_cols=23 Identities=39% Similarity=0.411 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.|+|+||+||||||++..|...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999987544
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.08 E-value=0.015 Score=59.71 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=26.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
+.+|+|+||+||||||++..||..+. ..++.+|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCc
Confidence 34899999999999999999986542 24455553
No 430
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.05 E-value=0.0079 Score=55.22 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
..|+|+|++||||||++..|++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999986
No 431
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.04 E-value=0.008 Score=56.12 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=24.6
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+++++++..+. ..|+|+|++||||||++..|.+
T Consensus 15 ~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhc
Confidence 34455554433 4689999999999999999974
No 432
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.01 E-value=0.013 Score=64.50 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=35.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~ 454 (552)
+.+|.|+|+.||||||+++.|+..+...|..+.+++.|..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4589999999999999999999988888888888888864
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.98 E-value=0.015 Score=55.19 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.|+|+|++||||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999866
No 434
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.96 E-value=0.23 Score=47.99 Aligned_cols=88 Identities=13% Similarity=0.015 Sum_probs=48.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCc-eeecC--C-------CCCHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP-IFEKG--Y-------EKDPAIVA 486 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~-~~~~~--~-------~~dp~~ia 486 (552)
-++++||+|+|||.++..++..+ +++++++. .+ .....|+......+++. +..-. . ...+..+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~-P~--~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~ 183 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL---STPTLIVV-PT--LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAY 183 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS---CSCEEEEE-SS--HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEe-CC--HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHHHH
Confidence 37789999999999877766543 56666653 22 12344444433335544 21110 0 00112222
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCh
Q 008816 487 KEAIQEATRNGSDVVLVDTAGRMQVI 512 (552)
Q Consensus 487 r~aIa~a~~~~~DvVIIDtpGr~~~~ 512 (552)
. .+. .+...+++|||||+.++...
T Consensus 184 ~-~~~-~~~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 184 V-NAE-KLGNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp H-THH-HHTTTCSEEEEECSSCCCTT
T ss_pred h-hHH-HhcccCCEEEEECCccCCCh
Confidence 1 111 22356999999999877543
No 435
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=94.95 E-value=0.32 Score=46.00 Aligned_cols=105 Identities=11% Similarity=0.168 Sum_probs=70.6
Q ss_pred EEEeecCcEEEEeecccCCCCCCCcHHHHHHHhhhhcccCC---CceeeccCCCceeeEEEEecccceEEEEEeccccch
Q 008816 5 LLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL---ASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHL 81 (552)
Q Consensus 5 ~~IftkgGiVLWs~~~~~~~~~~~~in~lI~~vlleer~~~---~~~~~~~~~~~y~lkw~~~ne~~Lvfv~vyq~il~l 81 (552)
++.+.+|++||=.++.. . .-...+++.+ |+..... .+|.+ ++|..+|..++ ||+|+++--+-..-
T Consensus 6 Ya~VArg~~iLae~t~~----~-gnf~~ia~~i-L~kip~~~~k~s~~~----~~y~fHyl~~~--gl~yl~i~d~~yp~ 73 (189)
T 4b93_A 6 FAVVARGTTILAKHAWC----G-GNFLEVTEQI-LAKIPSENNKLTYSH----GNYLFHYICQD--RIVYLCITDDDFER 73 (189)
T ss_dssp EEEEEETTEEEEEEESS----E-ECHHHHHHHH-HTTCCSSSEEEEEEE----TTEEEEEEEET--TEEEEEEEETTSCH
T ss_pred EEEEEeCCEEEEeCCCC----C-CCHHHHHHHH-HHhCCCCCCeEEEEE----CCEEEEEEEeC--CeEEEEEEcCccCH
Confidence 56778999999764322 2 2244555554 4444332 36888 99999987765 68999987777776
Q ss_pred hhHHHHHHHHHHHHHHhcCCcCC--CCcchHHHHHHHHHHHH
Q 008816 82 LYVDDLLAMMKQSFSEIYDPKRT--DYSDFDEMFRQLRKEAE 121 (552)
Q Consensus 82 ~yvd~ll~~v~~~F~~~y~~~~~--~~~~f~~~f~~~l~~~e 121 (552)
.-.=.||+.|+.+|...|++... .-..|...|...|++.-
T Consensus 74 r~af~fL~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~ 115 (189)
T 4b93_A 74 SRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQL 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCccccchhhHHHHHHH
Confidence 66667888899999999976532 11246666766665543
No 436
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.91 E-value=0.1 Score=56.83 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=49.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHH----HHhhCCceEEEeeec-CCcchHHHHHHHHHHHcCCce----eecCCCCCHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAY----WLLQHKVSVMMAACD-TFRSGAVEQLRTHARRLQVPI----FEKGYEKDPAI 484 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~----~l~~~ggkVll~~~D-~~r~ga~eqL~~~~~~l~v~~----~~~~~~~dp~~ 484 (552)
.+.+|+|+|+.|+||||++..++. .....-.-+.++... .+.......++.....++... .......+...
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 356999999999999999998885 222221223333322 111234455556666655431 11111122222
Q ss_pred HHHHHHHHHHhCC-CCEEEEeCCC
Q 008816 485 VAKEAIQEATRNG-SDVVLVDTAG 507 (552)
Q Consensus 485 iar~aIa~a~~~~-~DvVIIDtpG 507 (552)
+. ..+...+... .=+||+|-.-
T Consensus 231 l~-~~l~~~L~~~kr~LlVLDdv~ 253 (549)
T 2a5y_B 231 LK-RMICNALIDRPNTLFVFDDVV 253 (549)
T ss_dssp HH-HHHHHHHTTSTTEEEEEEEEC
T ss_pred HH-HHHHHHHcCCCcEEEEEECCC
Confidence 32 3444555554 5678888764
No 437
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.85 E-value=0.023 Score=58.85 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=26.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
+.+|+|+||+||||||+...||..+ + .-++++|.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l---~--~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF---P--LEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS---C--EEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC---C--CcEEcccc
Confidence 4599999999999999999998644 2 23455554
No 438
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.84 E-value=0.015 Score=60.49 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
.+.+|+|+||+||||++-.|+..
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~ 48 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFA 48 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 49999999999999999999863
No 439
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.78 E-value=0.053 Score=58.11 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
.-|+|+||+|+||||+++.||..+.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999998774
No 440
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.77 E-value=0.02 Score=50.41 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+.|+|+|+.||||||++..|.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999985
No 441
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.76 E-value=0.071 Score=51.47 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=26.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecC
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~ 453 (552)
.+|.|+|+|.-||||||.++.|+. .|. .++++|.
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~----~g~--~vidaD~ 41 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA----RGA--SLVDTDL 41 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH----CCC--cEEECcH
Confidence 468999999999999999888765 344 4457774
No 442
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.73 E-value=0.019 Score=50.38 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
..|+|+|+.||||||++..|.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999853
No 443
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.71 E-value=0.015 Score=64.26 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=33.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHhhCC-ceEEEeeecCC
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHK-VSVMMAACDTF 454 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~~~g-gkVll~~~D~~ 454 (552)
+.+|.|+|++||||||+++.|+..+...| ..+.+.+.|..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 46899999999999999999999888766 67777777753
No 444
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.70 E-value=0.022 Score=51.06 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
++..|+|+|..||||||++..|.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 445
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.68 E-value=0.016 Score=55.85 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.+..|+|+|++||||||++..|.+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 34689999999999999999998643
No 446
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.66 E-value=0.022 Score=55.68 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=32.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeeecCCc
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~D~~r 455 (552)
.+.|.|++|+|||++++.|+..+...+..+..+.|..+.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 678999999999999999998877666777777776653
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.63 E-value=0.0089 Score=68.68 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
.++|+||+|+||||+++.||+.+.
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred eeEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999999874
No 448
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.63 E-value=0.012 Score=59.44 Aligned_cols=23 Identities=39% Similarity=0.342 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCChhHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
.+|+|+|++|||||||+..|.+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 38999999999999999999974
No 449
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.61 E-value=0.021 Score=50.24 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
..|+|+|+.||||||++..|.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999885
No 450
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.61 E-value=0.02 Score=61.46 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=28.9
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
.+.+|+|+|.+||||||+++.|+..+.........+.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 4568999999999999999999987765554444333
No 451
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.61 E-value=0.021 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
...|+|+|+.||||||++..|.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 357899999999999999999863
No 452
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.59 E-value=0.043 Score=58.85 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
.+++|.|+.|+||||++..++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4899999999999999988763
No 453
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.55 E-value=0.022 Score=50.12 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
..|+|+|+.||||||++..|.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999985
No 454
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.51 E-value=0.017 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
|.+|+|+|++||||||++..|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3489999999999999999998754
No 455
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=94.51 E-value=0.049 Score=57.39 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEeee
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~~ 451 (552)
.-++|+|++|+||||++..|...+...|..|.+++.
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 478999999999999998888777777888877653
No 456
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.49 E-value=0.0089 Score=64.96 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=27.7
Q ss_pred ccccccccccCCCcEEEEEEcCCCCChhHHHHHHHHH
Q 008816 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 402 iL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
.++++.+.+.+| +.+|+|+||+||||++..|.+.
T Consensus 50 ~~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG---FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS---EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC---eEEEEcCCCCCHHHHHHHHHHH
Confidence 345566666554 8999999999999999999876
No 457
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.43 E-value=0.018 Score=61.54 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
..|+|||.+|||||||+..|++
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3899999999999999999864
No 458
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.42 E-value=0.039 Score=52.72 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHhhCCceEEEee
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~~~ggkVll~~ 450 (552)
+.|+|=|+-||||||.+..|+.+|. .|.+|.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 3889999999999999999999986 477776643
No 459
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.42 E-value=0.022 Score=52.12 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
....|+|+|+.||||||++..|.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999974
No 460
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=94.41 E-value=0.37 Score=45.62 Aligned_cols=95 Identities=14% Similarity=0.172 Sum_probs=61.9
Q ss_pred CcceEEEeecC--cEEEEeecccCCC--CCCCcHHHHHHHhhhhccc---CCCceeeccCCCceeeEEEEecccceEEEE
Q 008816 1 MLEQLLIFTRG--GLILWTCKELGNA--LKGSPIDTLIRSCLLEERS---GLASFNYDSAGAAYTLKWTFHNELGLVFVA 73 (552)
Q Consensus 1 MlD~~~Iftkg--GiVLWs~~~~~~~--~~~~~in~lI~~vlleer~---~~~~~~~~~~~~~y~lkw~~~ne~~Lvfv~ 73 (552)
|+- ++.+.+| |+||=........ -....+...++.++=.=.. ...+|.+ ++|..+|...| ||+|++
T Consensus 2 Mi~-ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~----~~y~fhy~~~~--gl~~l~ 74 (196)
T 2nut_C 2 MVL-LTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEA----GAMTFHYIIEQ--GVCYLV 74 (196)
T ss_dssp CCC-CEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEE----TTEEEEEEEET--TEEEEE
T ss_pred ceE-EEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEe----CCEEEEEEeCC--CeEEEE
Confidence 664 4556888 9999754321100 0011355666666532211 1246788 99999987755 688988
Q ss_pred EeccccchhhHHHHHHHHHHHHHHhcCCc
Q 008816 74 VYQRILHLLYVDDLLAMMKQSFSEIYDPK 102 (552)
Q Consensus 74 vyq~il~l~yvd~ll~~v~~~F~~~y~~~ 102 (552)
+--+-..-...=.||+.|+.+|...|+..
T Consensus 75 i~d~~yp~r~af~fL~~i~~~F~~~~~~~ 103 (196)
T 2nut_C 75 LCEAAFPKKLAFAYLEDLHSEFDEQHGKK 103 (196)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEcCCcchHHHHHHHHHHHHHHHHhccch
Confidence 87777776667778899999999999754
No 461
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.39 E-value=0.037 Score=54.53 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=33.3
Q ss_pred CccchhHHHHHHHHHHHHHHhCCCCcccccccccccccCCCcEEEEEEcCCCCChhHHHHHHHH
Q 008816 374 SFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 374 ~f~~~~~~v~~~l~~~L~~il~~~~~~diL~di~~~~~~g~p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
.|......++..+.+.+.+.... ......|+|+|.+|+||||++..|.+
T Consensus 13 g~~~l~~~~~~~l~~~~~~~~~~---------------~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 13 GINTFAPATQTKLLELLGNLKQE---------------DVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHT---------------TCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred chhhccHHHHHHHHHHHHHHhhc---------------CCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 35555566666665555444321 12245899999999999999999985
No 462
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.37 E-value=0.035 Score=58.81 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
.+|+|+||+||||||++..||..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999997664
No 463
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.36 E-value=0.025 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
..|+|+|+.||||||++..|.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.36 E-value=0.023 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=23.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHh
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLL 440 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~ 440 (552)
|.+|+|.|+.||||||++..|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998874
No 465
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.33 E-value=0.021 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
..|+|+|++||||||++..|++.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 466
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.32 E-value=0.026 Score=52.86 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l 439 (552)
.+..|+|+|++||||||++..|++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998643
No 467
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.31 E-value=0.026 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
+..|+|+|+.||||||++..|.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999863
No 468
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.28 E-value=0.027 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+..|+|+|+.||||||++..|.+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999985
No 469
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.28 E-value=0.027 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
+..|+|+|+.||||||++..|.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999853
No 470
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.27 E-value=0.02 Score=65.10 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
-++|+||+|+||||++..||..+..
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHhc
Confidence 6789999999999999999988754
No 471
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.27 E-value=0.028 Score=49.65 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
..|+|+|..||||||++..|.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999985
No 472
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.26 E-value=0.028 Score=49.68 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
..|+|+|+.||||||++..|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999853
No 473
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.26 E-value=0.027 Score=49.81 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
..|+|+|+.||||||++..|.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 474
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.26 E-value=0.23 Score=52.77 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=45.8
Q ss_pred EEEEEcCCCCChhHH-HHHHHHHHhhCCceEEEeeecCCcchHHHHHHHHHHHcCCceeecC--C------C-----CCH
Q 008816 417 VVVFVGVNGVGKSTN-LAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKG--Y------E-----KDP 482 (552)
Q Consensus 417 vI~lvG~nGvGKTTl-l~kLA~~l~~~ggkVll~~~D~~r~ga~eqL~~~~~~l~v~~~~~~--~------~-----~dp 482 (552)
++++++|+|+|||+. +.-+...+...+.+++++. +.|.-+. |...... ++.+.... . . ..+
T Consensus 21 ~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~--Ptr~La~-Q~~~~l~--g~~v~~~~~~~~~~~~~~~~i~~~t~ 95 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIVREALLRRLRTLILA--PTRVVAA-EMEEALR--GLPIRYQTPAVKSDHTGREIVDLMCH 95 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEE--SSHHHHH-HHHHHTT--TSCEEECCTTCSCCCCSSCCEEEEEH
T ss_pred eEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEEC--CCHHHHH-HHHHHhc--CceeeeeeccccccCCCCceEEEECh
Confidence 788999999999993 4444333344566777664 4444333 3222222 22221100 0 0 012
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 008816 483 AIVAKEAIQEATRNGSDVVLVDTAGRM 509 (552)
Q Consensus 483 ~~iar~aIa~a~~~~~DvVIIDtpGr~ 509 (552)
..+....+......++++|||||+-++
T Consensus 96 ~~l~~~l~~~~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 96 ATFTTRLLSSTRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp HHHHHHHHHCSCCCCCSEEEEETTTCC
T ss_pred HHHHHHhhCcccccCCCEEEEeCCccC
Confidence 222222222112468899999999866
No 475
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.26 E-value=0.035 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
+..|+|+|+.||||||++..|.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 476
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.20 E-value=0.027 Score=50.24 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+..|+|+|++||||||++..|.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 35799999999999999999974
No 477
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.20 E-value=0.093 Score=61.57 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=51.1
Q ss_pred CcEEEEEEcCCCCChhHHHHHHHHHHh--h--CCceEEEeeecC-CcchHHHHHHHHHHHcCCceee-cCCCCCHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVAYWLL--Q--HKVSVMMAACDT-FRSGAVEQLRTHARRLQVPIFE-KGYEKDPAIVAK 487 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA~~l~--~--~ggkVll~~~D~-~r~ga~eqL~~~~~~l~v~~~~-~~~~~dp~~iar 487 (552)
.+++|+|+|+.|+||||++..++.... . ....|.++.... ........+......++..... .....+...+ .
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 224 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEA-K 224 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHH-H
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHH-H
Confidence 456999999999999999998885432 1 234565555433 2333344455555554332211 1112233333 3
Q ss_pred HHHHHHHhCC--CCEEEEeCCC
Q 008816 488 EAIQEATRNG--SDVVLVDTAG 507 (552)
Q Consensus 488 ~aIa~a~~~~--~DvVIIDtpG 507 (552)
..+...+... .=+||+|-.-
T Consensus 225 ~~l~~~l~~~~~~~LlvlDd~~ 246 (1249)
T 3sfz_A 225 DRLRVLMLRKHPRSLLILDDVW 246 (1249)
T ss_dssp HHHHHHTSSSSCSCEEEEESCC
T ss_pred HHHHHHHhccCCCEEEEEecCC
Confidence 3444433333 5688999764
No 478
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.024 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
..|+|+|+.||||||++..|.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999985
No 479
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.17 E-value=0.029 Score=51.18 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
+..|+|+|..||||||++..|++.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999853
No 480
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.17 E-value=0.023 Score=50.95 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+..|+|+|++||||||++..|.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999975
No 481
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.16 E-value=0.032 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+..|+|+|+.||||||++..|.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999975
No 482
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.16 E-value=0.029 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
...|+|+|+.||||||++..|.+
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999975
No 483
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.16 E-value=0.044 Score=48.76 Aligned_cols=23 Identities=17% Similarity=-0.075 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l 439 (552)
-|.|.|++|+|||++++.|+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 47899999999999988887543
No 484
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.13 E-value=0.17 Score=53.98 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=28.5
Q ss_pred cCCCcEEEEEEcCCCCChhHH-HHHHHHHHhhCCceEEEeeecCCcchH
Q 008816 411 EQRKPYVVVFVGVNGVGKSTN-LAKVAYWLLQHKVSVMMAACDTFRSGA 458 (552)
Q Consensus 411 ~~g~p~vI~lvG~nGvGKTTl-l~kLA~~l~~~ggkVll~~~D~~r~ga 458 (552)
..|+ .+++++|+|+|||+. +.-+...+...+.+++++. +.|.-+
T Consensus 19 ~~~~--~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~--Ptr~La 63 (459)
T 2z83_A 19 RKRQ--MTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLA--PTRVVA 63 (459)
T ss_dssp STTC--EEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEE--CSHHHH
T ss_pred hcCC--cEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEC--chHHHH
Confidence 4566 899999999999996 3333333444566776654 444433
No 485
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.11 E-value=0.03 Score=50.58 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
+..|+|+|+.||||||++..|.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999853
No 486
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.01 E-value=0.092 Score=50.75 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.2
Q ss_pred CCCcEEEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 412 ~g~p~vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
+|. +|+|.|+.||||||.+..|+.++..
T Consensus 4 ~g~--~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGK--LILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCC--EEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCe--EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455 9999999999999999999998876
No 487
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.99 E-value=0.033 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+..|+|+|+.||||||++..|.+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999985
No 488
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.97 E-value=0.031 Score=50.77 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCChhHHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
..|+|+|+.||||||++..|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998753
No 489
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.96 E-value=0.034 Score=50.03 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
...|+|+|+.||||||++..|.+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 35799999999999999999985
No 490
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.96 E-value=0.36 Score=52.13 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=37.5
Q ss_pred cccCCCcEEEEEEcCCCCChhHHHHHHHHHHhh-CCceEEEeeecCCcchHHHHHHHH
Q 008816 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTH 465 (552)
Q Consensus 409 ~~~~g~p~vI~lvG~nGvGKTTll~kLA~~l~~-~ggkVll~~~D~~r~ga~eqL~~~ 465 (552)
.+.+|+ .++|+|+.|+||||++..|+..... ++.-+.++.++-......+-++.+
T Consensus 149 pigkGQ--r~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~ 204 (482)
T 2ck3_D 149 PYAKGG--KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 204 (482)
T ss_dssp CEETTC--EEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHH
T ss_pred ccccCC--eeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHh
Confidence 356777 9999999999999999999976543 344455667765433333333333
No 491
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.95 E-value=0.039 Score=52.68 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=27.3
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHHHh-----hCC-ceEEEeeec
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYWLL-----QHK-VSVMMAACD 452 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~l~-----~~g-gkVll~~~D 452 (552)
+.+++|+|++|+|||+.+..++.... ..| ..|.+..+|
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 45889999999999999877654332 445 556566666
No 492
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.94 E-value=0.034 Score=49.63 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHHH
Q 008816 416 YVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 416 ~vI~lvG~nGvGKTTll~kLA~ 437 (552)
..|+|+|+.||||||++..|.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999985
No 493
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.92 E-value=0.91 Score=46.55 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=24.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHHh-hCCceEEEee
Q 008816 418 VVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAA 450 (552)
Q Consensus 418 I~lvG~nGvGKTTll~kLA~~l~-~~ggkVll~~ 450 (552)
+.+..|+|+|||..+..++..+. ..+++++++.
T Consensus 26 ~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~ 59 (494)
T 1wp9_A 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA 59 (494)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 56789999999998877765443 3566776654
No 494
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.92 E-value=0.034 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
...|+|+|+.||||||++..|.+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45799999999999999999986
No 495
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.91 E-value=0.031 Score=50.00 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.4
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
...|+|+|++||||||++..|.+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999974
No 496
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.89 E-value=0.033 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
...|+|+|++||||||++..|.+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 497
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.89 E-value=0.036 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCCChhHHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~~ 438 (552)
...|+|+|..||||||++..|.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999863
No 498
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.88 E-value=0.13 Score=58.08 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHhh
Q 008816 417 VVVFVGVNGVGKSTNLAKVAYWLLQ 441 (552)
Q Consensus 417 vI~lvG~nGvGKTTll~kLA~~l~~ 441 (552)
.++|+|++|+||||++..|+..+..
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999987754
No 499
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.86 E-value=0.026 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.4
Q ss_pred CcEEEEEEcCCCCChhHHHHHHH
Q 008816 414 KPYVVVFVGVNGVGKSTNLAKVA 436 (552)
Q Consensus 414 ~p~vI~lvG~nGvGKTTll~kLA 436 (552)
++..|+|+|++||||||++..|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999998886
No 500
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.85 E-value=0.037 Score=49.57 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCChhHHHHHHHH
Q 008816 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (552)
Q Consensus 415 p~vI~lvG~nGvGKTTll~kLA~ 437 (552)
+..|+|+|+.||||||++..|.+
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999984
Done!