BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008817
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/520 (45%), Positives = 328/520 (63%), Gaps = 7/520 (1%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
RP A F P++WG+ FL K IDA T++ ++ LK+EVR MI A KL ID+
Sbjct: 22 RPKADFQPSIWGDLFLNCPD--KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDS 79
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
VQRLGV+YHF N+N +D YT S+ FRLLR+ G +SCDV
Sbjct: 80 VQRLGVSYHFTKEIEDELENI---YHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKF 136
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
+S+ +DV+ +L LY+A++L ++GEDILDEAI FTT HL V+ L+E+
Sbjct: 137 KDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEE 196
Query: 194 INHXXXXXXXXXXXXXEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTRW 253
++H EAR++L V + H+K+LL+FAK+DFN+LQ H+KE+S++ RW
Sbjct: 197 VSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRW 256
Query: 254 WIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGT 313
W DLDF KLPYARDR+VE YFWI G Y+EP+Y+ GR ++K+I+M SI+DDT+D+Y T
Sbjct: 257 WKDLDFQRKLPYARDRVVEGYFWI-SGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315
Query: 314 YDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQT 373
Y+EL + A++RWDI ID +PEYMK YK+LLDVY++ + +A+ GR Y V+Y K
Sbjct: 316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGR-QYRVEYAKNA 374
Query: 374 MEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLI 433
M Y EAKW + + P EE++ AL + G LA SFV MGDI T E F+W
Sbjct: 375 MIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAA 434
Query: 434 KKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNA 493
PKI+ A+ I R MDD+A H+F+ +R SA+ECYM+++GV+ +EA V++A
Sbjct: 435 SDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESA 494
Query: 494 WKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYT 533
WKD+N+E L PT + +L R LNLARV +Y +GD YT
Sbjct: 495 WKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYT 534
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/542 (42%), Positives = 332/542 (61%), Gaps = 11/542 (2%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
RP+A FSP++WG+ FL + D + + QE+ EALK++ R M+ AT K+AD L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEI-EALKEQTRSMLLATGRKLADTLNLIDI 73
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
++RLG++YHF + N N +D T +L FRLLRQ G IS ++
Sbjct: 74 IERLGISYHFEKEIDEILD----QIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKF 129
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
S+ +DV +L+LYEA+H+ + +DIL++A+ F+T HL+S H L EQ
Sbjct: 130 QDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQ 189
Query: 194 INHXXXXXXXXXXXXXEARYFLD-VCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTR 252
+ H E R+F+ + + + LL+FAKLDFNLLQ H++E++ ++R
Sbjct: 190 VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
Query: 253 WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYG 312
WW DLDF T LPYARDR+VE YFW L G Y+EP+Y+ R+ + K ISMISI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 308
Query: 313 TYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQ 372
T EL+ + +A++RWDI ID LP+YMK YK++LD+Y E+ L+ GR S+ V + +
Sbjct: 309 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGR-SHIVCHAIE 367
Query: 373 TMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWL 432
M+E + Y E+ W EG+ P + EY AL ++ LAT S++ M AT++ FEWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWL 426
Query: 433 IKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDN 492
K PKI+ A+ I R++DD A++E E+ RG I + +EC M+ +G+S +EA + +
Sbjct: 427 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 493 AWKDINEELLSPTAVSLPLLERILNLARVCHFMY-EDGDRYTQP-LLMKDQVALVLKDPV 550
AWKDINE LL PT VS L ILNLAR+ Y + D YT P ++K + +L D +
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 546
Query: 551 TL 552
+
Sbjct: 547 KI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/542 (42%), Positives = 332/542 (61%), Gaps = 11/542 (2%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
RP+A FSP++WG+ FL + D + + QE+ EALK++ R M+ AT K+AD L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEI-EALKEQTRSMLLATGRKLADTLNLIDI 73
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
++RLG++YHF + N N +D T +L FRLLRQ G IS ++
Sbjct: 74 IERLGISYHFEKEIDEILD----QIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKF 129
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
S+ +DV +L+LYEA+H+ + +DIL++A+ F+T HL+S H L EQ
Sbjct: 130 QDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQ 189
Query: 194 INHXXXXXXXXXXXXXEARYFLD-VCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTR 252
+ H E R+F+ + + + LL+FAKLDFNLLQ H++E++ ++R
Sbjct: 190 VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
Query: 253 WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYG 312
WW DLDF T LPYARDR+VE YFW L G Y+EP+Y+ R+ + K ISMISI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 308
Query: 313 TYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQ 372
T EL+ + +A++RWDI ID LP+YMK YK++LD+Y E+ L+ GR S+ V + +
Sbjct: 309 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGR-SHIVCHAIE 367
Query: 373 TMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWL 432
M+E + Y E+ W EG+ P + EY AL ++ LAT S++ M AT++ FEWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWL 426
Query: 433 IKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDN 492
K PKI+ A+ I R++DD A++E E+ RG I + +EC M+ +G+S +EA + +
Sbjct: 427 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 493 AWKDINEELLSPTAVSLPLLERILNLARVCHFMY-EDGDRYTQP-LLMKDQVALVLKDPV 550
AWKDINE LL PT VS L ILNLAR+ Y + D YT P ++K + +L D +
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
Query: 551 TL 552
+
Sbjct: 547 KI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/542 (42%), Positives = 332/542 (61%), Gaps = 11/542 (2%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
RP+A FSP++WG+ FL + D + + +E+ EALK++ R M+ AT K+AD L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEI-EALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
++RLG++YHF + N N +D T +L FRLLRQ G IS ++
Sbjct: 74 IERLGISYHFEKEIDDILD----QIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKF 129
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
S+ +DV +L+LYEA+H+ + +DIL++A+ F+T HL+S H L EQ
Sbjct: 130 QDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQ 189
Query: 194 INHXXXXXXXXXXXXXEARYFLD-VCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTR 252
+ H E R+F+ + + + LL+FAKLDFNLLQ H++E++ ++R
Sbjct: 190 VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
Query: 253 WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYG 312
WW DLDF T LPYARDR+VE YFW L G Y+EP+Y+ R+ + K ISMISI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 308
Query: 313 TYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQ 372
T EL+ + +A++RWDI ID LP+YMK YK++LD+Y E+ L+ GR S+ V + +
Sbjct: 309 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGR-SHIVCHAIE 367
Query: 373 TMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWL 432
M+E + Y E+ W EG+ P + EY AL ++ LAT S++ M AT++ FEWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWL 426
Query: 433 IKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDN 492
K PKI+ A+ I R++DD A++E E+ RG I + +EC M+ +G+S +EA + +
Sbjct: 427 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 493 AWKDINEELLSPTAVSLPLLERILNLARVCHFMY-EDGDRYTQP-LLMKDQVALVLKDPV 550
AWKDINE LL PT VS L ILNLAR+ Y + D YT P ++K + +L D +
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 546
Query: 551 TL 552
+
Sbjct: 547 KI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/542 (42%), Positives = 332/542 (61%), Gaps = 11/542 (2%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
RP+A FSP++WG+ FL + D + + +E+ EALK++ R M+ AT K+AD L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEI-EALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
++RLG++YHF + N N +D T +L FRLLRQ G IS ++
Sbjct: 74 IERLGISYHFEKEIDDILD----QIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKF 129
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
S+ +DV +L+LYEA+H+ + +DIL++A+ F+T HL+S H L EQ
Sbjct: 130 QDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQ 189
Query: 194 INHXXXXXXXXXXXXXEARYFLD-VCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTR 252
+ H E R+F+ + + + LL+FAKLDFNLLQ H++E++ ++R
Sbjct: 190 VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
Query: 253 WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYG 312
WW DLDF T LPYARDR+VE YFW L G Y+EP+Y+ R+ + K ISMISI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 308
Query: 313 TYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQ 372
T EL+ + +A++RWDI ID LP+YMK YK++LD+Y E+ L+ GR S+ V + +
Sbjct: 309 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGR-SHIVCHAIE 367
Query: 373 TMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWL 432
M+E + Y E+ W EG+ P + EY AL ++ LAT S++ M AT++ FEWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWL 426
Query: 433 IKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDN 492
K PKI+ A+ I R++DD A++E E+ RG I + +EC M+ +G+S +EA + +
Sbjct: 427 SKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 493 AWKDINEELLSPTAVSLPLLERILNLARVCHFMY-EDGDRYTQP-LLMKDQVALVLKDPV 550
AWKDINE LL PT VS L ILNLAR+ Y + D YT P ++K + +L D +
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
Query: 551 TL 552
+
Sbjct: 547 KI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 227/542 (41%), Positives = 331/542 (61%), Gaps = 11/542 (2%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
RP+A FSP++WG+ FL + + + +E+ EALK++ R M+ AT K+AD L+LID
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEI-EALKEQTRNMLLATGMKLADTLNLIDT 60
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
++RLG++YHF + N N +D T +L FRLLRQ G IS ++
Sbjct: 61 IERLGISYHFEKEIDDILD----QIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKF 116
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
S+ +DV +L+LYEA+H+ + +DIL++A+ F+T HL+S H L EQ
Sbjct: 117 QDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQ 176
Query: 194 INHXXXXXXXXXXXXXEARYFLD-VCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTR 252
+ H E R+F+ + + + LL+FAKLDFNLLQ H++E++ ++R
Sbjct: 177 VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 236
Query: 253 WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYG 312
WW DLDF T LPYARDR+VE YFW L G Y+EP+Y+ R+ + K ISMISI+DDTFDAYG
Sbjct: 237 WWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 295
Query: 313 TYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQ 372
T EL+ + +A++RWDI ID LP+YMK YK++LD+Y E+ L+ GR S+ V + +
Sbjct: 296 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGR-SHIVCHAIE 354
Query: 373 TMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWL 432
M+E + Y E+ W EG+ P + EY AL ++ LAT S++ M AT++ FEWL
Sbjct: 355 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWL 413
Query: 433 IKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDN 492
K PKI+ A+ I R++DD A++E E+ RG I + +EC M+ +G+S +EA + +
Sbjct: 414 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 473
Query: 493 AWKDINEELLSPTAVSLPLLERILNLARVCHFMY-EDGDRYTQP-LLMKDQVALVLKDPV 550
AWKDINE LL PT VS L ILNLAR+ Y + D YT P ++K + +L D +
Sbjct: 474 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 533
Query: 551 TL 552
+
Sbjct: 534 KI 535
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 227/542 (41%), Positives = 331/542 (61%), Gaps = 11/542 (2%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
RP+A FSP++WG+ FL + + + +E+ EALK++ R M+ AT K+AD L+LID
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEI-EALKEQTRNMLLATGMKLADTLNLIDT 75
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
++RLG++YHF + N N +D T +L FRLLRQ G IS ++
Sbjct: 76 IERLGISYHFEKEIDDILD----QIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKF 131
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
S+ +DV +L+LYEA+H+ + +DIL++A+ F+T HL+S H L EQ
Sbjct: 132 QDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQ 191
Query: 194 INHXXXXXXXXXXXXXEARYFLD-VCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTR 252
+ H E R+F+ + + + LL+FAKLDFNLLQ H++E++ ++R
Sbjct: 192 VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 251
Query: 253 WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYG 312
WW DLDF T LPYARDR+VE YFW L G Y+EP+Y+ R+ + K ISMISI+DDTFDAYG
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWTL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 310
Query: 313 TYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQ 372
T EL+ + +A++RWDI ID LP+YMK YK++LD+Y E+ L+ GR S+ V + +
Sbjct: 311 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGR-SHIVCHAIE 369
Query: 373 TMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWL 432
M+E + Y E+ W EG+ P + EY AL ++ LAT S++ M AT++ FEWL
Sbjct: 370 RMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKS-ATEQDFEWL 428
Query: 433 IKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDN 492
K PKI+ A+ I R++DD A++E E+ RG I + +EC M+ +G+S +EA + +
Sbjct: 429 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 488
Query: 493 AWKDINEELLSPTAVSLPLLERILNLARVCHFMY-EDGDRYTQP-LLMKDQVALVLKDPV 550
AWKDINE LL PT VS L ILNLAR+ Y + D YT P ++K + +L D +
Sbjct: 489 AWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 548
Query: 551 TL 552
+
Sbjct: 549 KI 550
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 227/542 (41%), Positives = 331/542 (61%), Gaps = 11/542 (2%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
RP+A FSP++WG+ FL + + + +E+ EALK++ R M+ AT K+AD L+LID
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEI-EALKEQTRNMLLATGMKLADTLNLIDT 75
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
++RLG++YHF + N N +D T +L FRLLRQ G IS ++
Sbjct: 76 IERLGISYHFEKEIDDILD----QIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKF 131
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
S+ +DV +L+LYEA+H+ + +DIL++A+ F+T HL+S H L EQ
Sbjct: 132 QDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQ 191
Query: 194 INHXXXXXXXXXXXXXEARYFLD-VCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTR 252
+ H E R+F+ + + + LL+FAKLDFNLLQ H++E++ ++R
Sbjct: 192 VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 251
Query: 253 WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYG 312
WW DLDF T LPYARDR+VE YFW L G Y+EP+Y+ R+ + K ISMISI+DDTFDAYG
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 310
Query: 313 TYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQ 372
T EL+ + +A++RWDI ID LP+YMK YK++LD+Y E+ L+ GR S+ V + +
Sbjct: 311 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGR-SHIVCHAIE 369
Query: 373 TMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWL 432
M+E + Y E+ W EG+ P + EY AL ++ LAT S++ M AT++ FEWL
Sbjct: 370 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWL 428
Query: 433 IKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDN 492
K PKI+ A+ I R++DD A++E E+ RG I + +EC M+ +G+S +EA + +
Sbjct: 429 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 488
Query: 493 AWKDINEELLSPTAVSLPLLERILNLARVCHFMY-EDGDRYTQP-LLMKDQVALVLKDPV 550
AWKDINE LL PT VS L ILNLAR+ Y + D YT P ++K + +L D +
Sbjct: 489 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 548
Query: 551 TL 552
+
Sbjct: 549 KI 550
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/542 (41%), Positives = 331/542 (61%), Gaps = 11/542 (2%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
RP+A FSP++WG+ FL + D + + +E+ EALK++ R M+ AT K+AD L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEI-EALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
++RLG++YHF + N N +D T +L FRLLRQ G IS ++
Sbjct: 74 IERLGISYHFEKEIDDILD----QIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKF 129
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
S+ +DV +L+LYEA+H+ + +DIL++A+ F+T HL+S H L EQ
Sbjct: 130 QDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQ 189
Query: 194 INHXXXXXXXXXXXXXEARYFLD-VCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTR 252
+ H E R+F+ + + + LL+FAKLDFNLLQ H++E++ ++R
Sbjct: 190 VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
Query: 253 WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYG 312
WW DLDF T LPYARDR+VE YF L G Y+EP+Y+ R+ + K ISMISI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFSAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 308
Query: 313 TYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQ 372
T EL+ + +A++RWDI ID LP+YMK YK++LD+Y E+ L+ GR S+ V + +
Sbjct: 309 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGR-SHIVCHAIE 367
Query: 373 TMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWL 432
M+E + Y E+ W EG+ P + EY AL ++ LAT S++ M AT++ FEWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWL 426
Query: 433 IKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDN 492
K PKI+ A+ I R++DD A++E E+ RG I + +EC M+ +G+S +EA + +
Sbjct: 427 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 493 AWKDINEELLSPTAVSLPLLERILNLARVCHFMY-EDGDRYTQP-LLMKDQVALVLKDPV 550
AWKDINE LL PT VS L ILNLAR+ Y + D YT P ++K + +L D +
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
Query: 551 TL 552
+
Sbjct: 547 KI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/542 (41%), Positives = 331/542 (61%), Gaps = 11/542 (2%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
RP+A FSP++WG+ FL + D + + +E+ EALK++ R M+ AT K+AD L+LID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEI-EALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
++RLG++YHF + N N +D T +L FRLLRQ G IS ++
Sbjct: 74 IERLGISYHFEKEIDDILD----QIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKF 129
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
S+ +DV +L+LYEA+H+ + +DIL++A+ F+T HL+S H L EQ
Sbjct: 130 QDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQ 189
Query: 194 INHXXXXXXXXXXXXXEARYFLD-VCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTR 252
+ H E R+F+ + + + LL+FAKLDFNLLQ H++E++ ++R
Sbjct: 190 VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
Query: 253 WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYG 312
WW DLDF T LPYARDR+VE YF L G Y+EP+Y+ R+ + K ISMISI+DDTFDAYG
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFSAL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYG 308
Query: 313 TYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQ 372
T EL+ + +A++RWDI ID LP+YMK YK++LD+Y E+ L+ GR S+ V + +
Sbjct: 309 TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGR-SHIVCHAIE 367
Query: 373 TMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWL 432
M+E + Y E+ W EG+ P + EY AL ++ LAT S++ M AT++ FEWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWL 426
Query: 433 IKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDN 492
K PKI+ A+ I R++DD A++E E+ RG I + +EC M+ +G+S +EA + +
Sbjct: 427 SKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 493 AWKDINEELLSPTAVSLPLLERILNLARVCHFMY-EDGDRYTQP-LLMKDQVALVLKDPV 550
AWKDINE LL PT VS L ILNLAR+ Y + D YT P ++K + +L D +
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSI 546
Query: 551 TL 552
+
Sbjct: 547 KI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 183/541 (33%), Positives = 295/541 (54%), Gaps = 9/541 (1%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
R A + P W FL S+ ++I+ ++ + L+ EVR I + L LID
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIE-VYKDKAKKLEAEVRREINNEKAEFLTLLELIDN 73
Query: 74 VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
VQRLG+ Y F D + + +LSFRLLRQ G ++S +
Sbjct: 74 VQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGF 133
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHA-SPNLAE 192
++ D + +LSLYEA+ LA+ GE+ILDEA VF +HLK + LAE
Sbjct: 134 KDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELAE 193
Query: 193 QINHXXXXXXXXXXXXXEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTR 252
Q+NH EA + ++ + + ++ LL+ A LD+N++Q+ +Q+++ + +R
Sbjct: 194 QVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSR 253
Query: 253 WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYG 312
WW + +TKL +ARDR++E ++W +G +EP+Y+ R ++K+ S ++I+DD +D YG
Sbjct: 254 WWRRVGLATKLHFARDRLIESFYWA-VGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYG 312
Query: 313 TYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDK-AEESLAKEGRSSYGVKYVK 371
T DEL+LF +AV+RWD+ AI+ LP+YMK + +L + ++ A ++L +G + + Y+
Sbjct: 313 TLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENI--LPYLT 370
Query: 372 QTMEESIMMYFSEAKWLHEGFLPKIEEYEGVAL-GSSGVLTLATASFVDMGDIATKEAFE 430
+ + + EAKWL+ P ++Y G A SSG L L A F + +I KE E
Sbjct: 371 KAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNI-KKEEIE 429
Query: 431 WLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQV 490
L K I+ I RL +D+AS E RG ++V CYM+ G+SEE A +++ +
Sbjct: 430 NLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLI 489
Query: 491 DNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQP-LLMKDQVALVLKDP 549
D WK +N+E L + + P +E +NLAR H Y +GD +T P L + +V V+ +P
Sbjct: 490 DETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEP 549
Query: 550 V 550
+
Sbjct: 550 I 550
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 170/522 (32%), Positives = 273/522 (52%), Gaps = 27/522 (5%)
Query: 17 AGFSPTVWGNHFLKSASDFKAIDATTQELYE--------ALKQEVRMMITATADKIADKL 68
G+ PT+W DF I + E E + +V+MM+ D I +L
Sbjct: 38 GGYQPTLW---------DFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIR-RL 87
Query: 69 HLIDAVQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCD 128
LID ++RLG++ HF + N+ I D Y+ +L FRLLRQ +S +
Sbjct: 88 ELIDDLRRLGISCHFEREIVEILNSK--YYTNNEIDERDLYSTALRFRLLRQYDFSVSQE 145
Query: 129 VXXXXXXXXXX-XXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHL-KSMVSHA 186
V S+++D + +L LYEA+ L+ GE+ L A F T L K ++
Sbjct: 146 VFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDK 205
Query: 187 SPNLAEQINHXXXXXXXXXXXXXEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKE 246
NL I AR F+D R + ++L+ AKLDFN++QA Q+E
Sbjct: 206 DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQE 265
Query: 247 VSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDD 306
+ + +RWW +LP+ RDRIVE Y+W G ++ + RI ++K+ ++++ +DD
Sbjct: 266 LKEASRWWNSTGLVHELPFVRDRIVECYYWT-TGVVERRQHGYERIMLTKINALVTTIDD 324
Query: 307 TFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLD-VYDKAEESLAKEGRSSY 365
FD YGT +EL+LF A++RWDI ++ LP YM+ Y +L + V + A ++L +G S
Sbjct: 325 VFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDS- 383
Query: 366 GVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIAT 425
Y+++ I Y EAKW ++G P +EEY + S G + + + F + D
Sbjct: 384 -TPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIE 442
Query: 426 KEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKA 485
+EA E + K IV A+ TI RL DD+ + E +RG +P +V+CYM + SEEEA++
Sbjct: 443 EEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREH 502
Query: 486 LRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYE 527
+R +D WK +N+E+++ ++ S +E NLAR+ ++Y+
Sbjct: 503 VRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQ 543
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 258 bits (660), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 164/550 (29%), Positives = 274/550 (49%), Gaps = 22/550 (4%)
Query: 14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQE----VRMMITATADKIADKLH 69
R + P +W +++++S + T+E + K E VR+++ + + +L
Sbjct: 6 RRSGNYQPALWDSNYIQSLNT-----PYTEERHLDRKAELIVQVRILLKEKMEPV-QQLE 59
Query: 70 LIDAVQRLGVAYHFXXXXXXXXXXXXXH---LDNDNIGGDDFYTLSLSFRLLRQQGVKIS 126
LI ++ LG++ F N+ + D Y +L FRLLRQ G IS
Sbjct: 60 LIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNIS 119
Query: 127 CDVXXXXXXXXXX-XXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSH 185
DV AS+ D + ML LYEA+ L GED L+ A F T L+ +
Sbjct: 120 QDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDE 179
Query: 186 ASPNLAEQ----INHXXXXXXXXXXXXXEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQA 241
+ E I H EAR+F+D +R + + + AKL+FN++QA
Sbjct: 180 GGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQA 239
Query: 242 AHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMI 301
HQ+E+ D++RWW L F KLP+ RDR+VE +FW +G + ++ + R + +I +
Sbjct: 240 THQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGMFEPHQHGYQRKMAATIIVLA 298
Query: 302 SILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEG 361
+++DD +D YGT DEL+LF + KRWD +I LP YM+ Y + + A + KE
Sbjct: 299 TVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKE- 357
Query: 362 RSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMG 421
+ ++Y+++++ + + YF EAKW H G+ P ++EY +A S + + ++
Sbjct: 358 HGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFA 417
Query: 422 DIATKEA-FEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEE 480
+ + A + L + I+ A I RL DD+ + FE RG +P ++CYMK+ SEE
Sbjct: 418 NASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEE 477
Query: 481 EAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRY-TQPLLMK 539
EA + ++ + AWKD+N + + ++ N+ RV F+Y GD + Q
Sbjct: 478 EAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTY 537
Query: 540 DQVALVLKDP 549
+ +A +L +P
Sbjct: 538 EHIAGLLFEP 547
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 241 bits (615), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 163/548 (29%), Positives = 275/548 (50%), Gaps = 20/548 (3%)
Query: 14 RPIAGFSPTVWGNHFLKSA-SDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLID 72
R ++P+ W +F++S SD+K + L V+M + D+I +L LID
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRA--SELVTLVKMELEKETDQIR-QLELID 58
Query: 73 AVQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGD------DFYTLSLSFRLLRQQGVKIS 126
+QR+G++ HF +LD+ D Y+ SL+FRLLR+ G +++
Sbjct: 59 DLQRMGLSDHFQNEFKEILSSI--YLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVA 116
Query: 127 CDVXXXXXXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHA 186
+V S+ +D + +L LYEA+ L GE L+ A F T L+ V+
Sbjct: 117 QEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEG 176
Query: 187 S--PNLAEQINHXXXXXXXXXXXXXEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQ 244
+L +I + A +++ + + +L+ A LD N++QA Q
Sbjct: 177 GVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQ 236
Query: 245 KEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPK-YAFGRIFMSKLISMISI 303
+E+ + RWW + F KLP+ARDR+VE YFW EP+ +A RI M K+ ++I++
Sbjct: 237 EELKESFRWWRNTGFVEKLPFARDRLVECYFW--NTGIIEPRQHASARIMMGKVNALITV 294
Query: 304 LDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRS 363
+DD +D YGT +EL+ F + ++RWDI +ID LP+YM+ + +L + D + KE +
Sbjct: 295 IDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKE-KG 353
Query: 364 SYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDI 423
+ Y++Q+ + Y EA+W + G P +EEY + S + T F + D
Sbjct: 354 VNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDS 413
Query: 424 ATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAK 483
TKE + L K +V + + RL DD+ + E RG +P +++CYM + SE EA+
Sbjct: 414 FTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEAR 473
Query: 484 KALRIQVDNAWKDINEELLSP-TAVSLPLLERILNLARVCHFMYEDGDRY-TQPLLMKDQ 541
K ++ + WK +N E +S + + ++L R+ MY +GD + TQ ++ Q
Sbjct: 474 KHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQ 533
Query: 542 VALVLKDP 549
+ L +P
Sbjct: 534 MTRTLFEP 541
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/529 (31%), Positives = 267/529 (50%), Gaps = 49/529 (9%)
Query: 64 IADKLHLIDAVQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGD------DFYTLSLSFRL 117
+ ++L ++D + RLG+ HF H + IG D T +L FRL
Sbjct: 298 LLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRL 357
Query: 118 LRQQGVKISCDVXXXXXXXXXXXXAS---MINDVQVMLSLYEAAHLAINGEDILDEAIVF 174
LR +S + S DV ML+LY A+ LA GE+ILDEA F
Sbjct: 358 LRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSF 417
Query: 175 TTTHL-----KSMVSHA---SPNLAEQINHXXXXXXXXXXXXXEARYFLDVCSRGDR--- 223
T +L KS S A NL+++I + EA+ + V R D
Sbjct: 418 ATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQV-YRPDYARI 476
Query: 224 ----------HDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLP---YARDRI 270
+++ L+ KLDFN++Q+ HQ+E+ ++T W+ D + LP +AR+R
Sbjct: 477 AKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRD----SGLPLFTFARERP 532
Query: 271 VELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIG 330
+E YF + G Y EP+YA R +K+ + ++LDD +D YGT DELKLF EAV+RWD+
Sbjct: 533 LEFYFLVAAGTY-EPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLS 591
Query: 331 AIDTLPEYMKFIYKSLLD-VYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLH 389
+ LP+YMK Y+ D V++ A E+ ++GR V + ++ E+ ++ Y+ EA+WL
Sbjct: 592 FTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGREL--VSFFRKGWEDYLLGYYEEAEWLA 649
Query: 390 EGFLPKIEEYEGVALGSSG--VLTLATASFVDMGDIATKEAFEWLIKKPKIVVAA--QTI 445
++P ++EY + S G +L L+ +D G + ++EA E + + V+ I
Sbjct: 650 AEYVPTLDEYIKNGITSIGQRILLLSGVLIMD-GQLLSQEALEKVDYPGRRVLTELNSLI 708
Query: 446 GRLMDDIASHEFEQKRGHIPSAVECYMKQHG-VSEEEAKKALRIQVDNAWKDINEELLSP 504
RL DD +++ E+ RG + S++ECYMK H +EEEA + ++ A K++ E L P
Sbjct: 709 SRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKP 768
Query: 505 TAVSLPLLERILNLARVCHFMYEDGDRY-TQPLLMKDQVALVLKDPVTL 552
V + + RV +++DGD + L +KD + L +P+ L
Sbjct: 769 DDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 140/522 (26%), Positives = 246/522 (47%), Gaps = 46/522 (8%)
Query: 66 DKLHLIDAVQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGG------DDFYTLSLSFRLLR 119
++L +D V+RLG+ HF H D IG D ++ R+LR
Sbjct: 272 ERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILR 331
Query: 120 QQGVKISCDVXXXXXXXXXXX---XASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTT 176
G +S DV V ML++ +H++ GE I++EA + T
Sbjct: 332 LHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTE 391
Query: 177 THLKSMVSHA--------SPNLAEQINHXXXXXXXXXXXXXEARYFLDVCSRGDR----- 223
+L++ + + N+ ++ + EAR +++ D
Sbjct: 392 RYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKT 451
Query: 224 -------HDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFW 276
++ L+ AKLDFN +Q+ HQ E+ D+ RWW F T L + R+R+ E+YF
Sbjct: 452 VYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIYF- 509
Query: 277 ILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLP 336
+EP+++ R +K + ILDD +DA+G+ D+LKLF E+VKRWD+ +D +P
Sbjct: 510 SPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMP 569
Query: 337 EYMKFIYKSLLDVYDKAEESLAKEGRSSYG---VKYVKQTMEESIMMYFSEAKWLHEGFL 393
+ MK + + ++ +AKEGR G + Y++ + + Y EA+W ++
Sbjct: 570 QQMKICFVGFYNTFN----DIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYV 625
Query: 394 PKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIA 453
P EY A S + T+ S + G++ T E + ++ + + GRL++D
Sbjct: 626 PSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTK 685
Query: 454 SHEFEQKRGHIPSAVECYMKQH-GVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLL 512
+++ E+ +G + SA++CYMK H +SEEEA + + ++NA +++N E ++ +P +
Sbjct: 686 TYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNN---KIPDI 742
Query: 513 ER--ILNLARVCHFMYEDGDRYT--QPLLMKDQVALVLKDPV 550
+ + AR+ Y GD T + +K+ V L PV
Sbjct: 743 YKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 137/515 (26%), Positives = 233/515 (45%), Gaps = 34/515 (6%)
Query: 66 DKLHLIDAVQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGD------DFYTLSLSFRLLR 119
++L L+D ++ LG+ HF H IG D T +L R LR
Sbjct: 248 ERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLR 307
Query: 120 QQGVKISCDVXXXXXXXXXXXXASMIN---DVQVMLSLYEAAHLAINGEDILDEAIVFTT 176
G +S DV +S +++ +++L+ A+ LA E +D+A F
Sbjct: 308 MHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAE 367
Query: 177 THLK-SMVSHASPN--LAEQINHXXXXXXXXXXXXXEARYFLD------VCSRGDRH--- 224
+L+ ++ + S N L ++I + EAR ++D V R +
Sbjct: 368 PYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMP 427
Query: 225 ---DKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGA 281
+ L+ AKLDFN++Q+ HQ+E+ +TRWW + + + + R R+ E+YF A
Sbjct: 428 SLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYF---SSA 483
Query: 282 YYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKF 341
+EP+Y+ RI +K+ + + DD D + T DELK F E VKRWD + +PE M+
Sbjct: 484 TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQT 543
Query: 342 IYKSLLDVYDKAEESLAK-EGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYE 400
+K + ++ + K +GR + ++++ E Y E +WL G++P EEY
Sbjct: 544 CFKVWFKLMEEVNNDVVKVQGRDM--LAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYL 601
Query: 401 GVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQK 460
S G+ + MG++ + E + + RL +D +++ E+
Sbjct: 602 KTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKA 661
Query: 461 RGHIPSAVECYMKQH-GVSEEEAKKALRIQVDNAWKDINEELLSPTA-VSLPLLERILNL 518
RG S + CYMK + G +EE+A K + VD A K+ + E P+ + + I NL
Sbjct: 662 RGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNL 721
Query: 519 ARVCHFMYEDGDRY-TQPLLMKDQVALVLKDPVTL 552
Y+ D Y +KD + V DP+ +
Sbjct: 722 RLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 102/283 (36%), Gaps = 38/283 (13%)
Query: 28 FLKSASDFKAIDATTQELYEALKQEVRMMITATAD----KIADKLHLIDAVQRLGVAYHF 83
F S++ F + E L+ V+ + + + + ++D +QRLG++ +F
Sbjct: 205 FSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYF 264
Query: 84 XXXXXXXXXXXXXHLDNDNIGG------DDFYTLSLSFRLLRQQGVKISCDVXXXXXXXX 137
+ ++ I D +++FRLLRQ G ++S DV
Sbjct: 265 EEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEG 324
Query: 138 X--XXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHAS-------- 187
V M +LY A+ LA E+IL A F+ +L
Sbjct: 325 EFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIM 384
Query: 188 PNLAEQINHXXXXXXXXXXXXXEARYFLDVCSRGDRHD---------------KSLLKFA 232
+L +I E R+++D G +D L+ A
Sbjct: 385 KDLPGEIGFALEIPWYASLPRVETRFYID--QYGGENDVWIGKTLYRMPYVNNNGYLELA 442
Query: 233 KLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYF 275
K D+N QA HQ E +W+ + S + R ++E Y+
Sbjct: 443 KQDYNNCQAQHQLEWDIFQKWYEENRLS-EWGVRRSELLECYY 484
>pdb|1WY6|A Chain A, Crystal Structure Of Hypothetical Protein [st1625p] From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 172
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 424 ATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAK 483
+TK + W I + + + +++D I S+ K ++ S VEC + + ++ E
Sbjct: 37 STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLN-EHVN 95
Query: 484 KALRIQVDNAWKD----INEELLSPTAVSLPLLERILNLAR 520
KAL I V +D I E+L VS +L I N R
Sbjct: 96 KALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALR 136
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 238 LLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKL 297
LLQ H+K RW + DF T+ P DR+ E F + + P + IF
Sbjct: 84 LLQQGHEK------RWMTEYDFLTEPPANPDRLFEYPFINPVDVFQPPAWVKDAIFYQIF 137
Query: 298 ISMISILDDTFDAYGT 313
+ D D GT
Sbjct: 138 PERFANGDTRNDPEGT 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,308,053
Number of Sequences: 62578
Number of extensions: 530812
Number of successful extensions: 1415
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 28
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)