Query 008817
Match_columns 552
No_of_seqs 233 out of 905
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 16:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 1E-154 3E-159 1275.9 54.9 533 14-549 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 2E-138 4E-143 1169.4 47.1 483 61-552 267-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 2E-110 4E-115 938.1 43.1 445 61-551 307-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 2.2E-57 4.9E-62 432.7 14.9 175 24-198 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 8.2E-49 1.8E-53 395.6 21.8 269 228-498 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 2.7E-46 5.8E-51 380.0 32.0 283 242-526 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 3.6E-34 7.8E-39 295.0 22.4 250 245-502 13-266 (303)
8 PLN02150 terpene synthase/cycl 100.0 8.2E-31 1.8E-35 225.1 10.6 94 459-552 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 7.5E-21 1.6E-25 184.9 12.8 227 279-520 4-243 (243)
10 PF06330 TRI5: Trichodiene syn 97.8 0.0005 1.1E-08 72.4 14.8 227 281-533 75-306 (376)
11 cd00686 Terpene_cyclase_cis_tr 97.7 0.0016 3.4E-08 67.8 15.9 218 279-522 71-295 (357)
12 PF00494 SQS_PSY: Squalene/phy 91.5 5.2 0.00011 40.4 14.4 198 288-514 17-233 (267)
13 cd00867 Trans_IPPS Trans-Isopr 91.4 2.5 5.5E-05 41.6 11.8 118 366-499 86-214 (236)
14 cd00685 Trans_IPPS_HT Trans-Is 87.3 23 0.0005 35.7 15.4 119 365-499 108-239 (259)
15 TIGR03465 HpnD squalene syntha 86.2 41 0.00089 34.1 18.1 196 289-518 18-226 (266)
16 TIGR02749 prenyl_cyano solanes 78.3 94 0.002 32.7 16.9 86 365-456 133-220 (322)
17 TIGR03464 HpnC squalene syntha 75.9 95 0.0021 31.5 17.7 108 289-420 18-131 (266)
18 PLN02890 geranyl diphosphate s 73.1 1.1E+02 0.0023 33.7 15.1 88 365-458 227-316 (422)
19 COG0142 IspA Geranylgeranyl py 70.1 1E+02 0.0022 32.4 13.9 107 365-478 134-252 (322)
20 PLN02857 octaprenyl-diphosphat 69.0 66 0.0014 35.2 12.4 86 365-456 227-314 (416)
21 KOG1719 Dual specificity phosp 68.2 4.2 9.1E-05 38.2 2.6 29 460-488 119-148 (183)
22 cd00683 Trans_IPPS_HH Trans-Is 66.5 1.5E+02 0.0032 29.9 18.8 199 289-521 24-238 (265)
23 PLN02632 phytoene synthase 64.1 2E+02 0.0043 30.4 18.2 194 291-512 75-281 (334)
24 TIGR02748 GerC3_HepT heptapren 54.1 2.8E+02 0.0061 29.0 16.3 86 365-456 129-216 (319)
25 PF03861 ANTAR: ANTAR domain; 51.2 16 0.00035 28.0 2.8 29 463-491 14-42 (56)
26 COG3707 AmiR Response regulato 48.1 16 0.00034 35.6 2.9 45 447-491 129-174 (194)
27 PRK10888 octaprenyl diphosphat 44.6 4E+02 0.0086 28.0 16.6 86 365-457 130-218 (323)
28 KOG3887 Predicted small GTPase 43.4 33 0.00072 34.8 4.3 185 280-481 86-315 (347)
29 CHL00151 preA prenyl transfera 40.0 4.6E+02 0.01 27.4 14.8 87 365-457 134-222 (323)
30 PRK10581 geranyltranstransfera 33.2 5.1E+02 0.011 26.9 11.5 112 375-499 152-276 (299)
31 smart00400 ZnF_CHCC zinc finge 30.7 58 0.0013 24.7 3.0 25 462-486 30-54 (55)
32 PF00348 polyprenyl_synt: Poly 29.0 6E+02 0.013 25.4 11.2 108 376-495 114-235 (260)
33 PF12368 DUF3650: Protein of u 28.8 45 0.00097 22.3 1.8 18 470-487 9-26 (28)
34 KOG3951 Uncharacterized conser 27.1 91 0.002 31.7 4.4 57 135-199 264-320 (321)
35 COG4738 Predicted transcriptio 26.2 2E+02 0.0043 25.8 5.8 80 68-156 14-102 (124)
36 COG1308 EGD2 Transcription fac 26.2 66 0.0014 29.0 3.0 23 466-488 86-108 (122)
37 smart00463 SMR Small MutS-rela 26.1 79 0.0017 25.6 3.3 23 475-497 7-29 (80)
38 PF10776 DUF2600: Protein of u 26.0 8.2E+02 0.018 26.0 14.5 113 417-546 199-311 (330)
39 PF01713 Smr: Smr domain; Int 23.8 79 0.0017 25.9 2.9 25 475-499 4-28 (83)
40 cd07604 BAR_ASAPs The Bin/Amph 23.8 1.5E+02 0.0033 29.3 5.4 86 40-136 12-100 (215)
41 PF13798 PCYCGC: Protein of un 22.4 85 0.0018 29.6 3.1 34 470-510 125-158 (158)
42 COG1093 SUI2 Translation initi 22.3 1.3E+02 0.0029 30.7 4.6 65 454-521 96-170 (269)
43 KOG3109 Haloacid dehalogenase- 22.2 90 0.0019 31.3 3.3 46 75-136 47-92 (244)
44 KOG3906 Tryptophan 2,3-dioxyge 21.7 94 0.002 31.8 3.4 106 51-165 87-210 (399)
45 KOG4025 Putative apoptosis rel 21.0 3.1E+02 0.0068 26.2 6.4 91 283-405 91-182 (207)
46 COG3063 PilF Tfp pilus assembl 20.8 5.8E+02 0.013 25.9 8.6 146 49-230 54-211 (250)
47 PTZ00393 protein tyrosine phos 20.2 83 0.0018 31.8 2.7 28 462-489 182-209 (241)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.2e-154 Score=1275.89 Aligned_cols=533 Identities=51% Similarity=0.914 Sum_probs=511.8
Q ss_pred CCCCCCCCCCccc-cccccCCchhhhhHHHHHHHHHHHHHHHHHHhhc--hhccccchhHHHHHHHhCcccccHHHHHHH
Q 008817 14 RPIAGFSPTVWGN-HFLKSASDFKAIDATTQELYEALKQEVRMMITAT--ADKIADKLHLIDAVQRLGVAYHFEKEIEDE 90 (552)
Q Consensus 14 r~~~~~~ps~W~~-~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~--~~d~~~~l~lID~lqrLGi~~hF~~EI~~~ 90 (552)
||+++||||+||| +|+++++++.. ...+.+++++||++||+||... |.|++++|++||+||||||+|||++||+++
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~ 79 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI 79 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 7899999999999 77776554432 2267889999999999999875 789999999999999999999999999999
Q ss_pred HHHHHhhccCCC-CCCCChhhhHHHHHHhhhcCcccccccccccccccccccccchhhHHHHHhHHhhcccCCCCcchHH
Q 008817 91 LEKILDHLDNDN-IGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILD 169 (552)
Q Consensus 91 L~~i~~~~~~~~-~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LyeAs~l~~~gE~iL~ 169 (552)
|++||++|.+.. ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||
T Consensus 80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd 159 (542)
T cd00684 80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD 159 (542)
T ss_pred HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence 999999986532 2357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhc---CCCcHHHHHHHhccCCccccchhhHHHHhHHhhcCCCCCCHHHHHHHhhhhHHHHHhhHHH
Q 008817 170 EAIVFTTTHLKSMVSH---ASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKE 246 (552)
Q Consensus 170 ea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~E 246 (552)
||++||++||++.+++ ++++|+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||+|
T Consensus 160 eA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~E 239 (542)
T cd00684 160 EALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE 239 (542)
T ss_pred HHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHH
Confidence 9999999999999986 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhh
Q 008817 247 VSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKR 326 (552)
Q Consensus 247 l~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~r 326 (552)
|+++++||+++||.++|||+|+|+++||||+ +|++|+|++|.+|+++||+++|+|++||+||.|||++|++.||+||+|
T Consensus 240 l~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~-~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~r 318 (542)
T cd00684 240 LKILSRWWKDLDLASKLPFARDRLVECYFWA-AGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVER 318 (542)
T ss_pred HHHHhHHHHhcCCcccCCcccchhHHHHHHH-HhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHh
Confidence 9999999999999888899999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhccc
Q 008817 327 WDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGS 406 (552)
Q Consensus 327 Wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S 406 (552)
||+++++++|+|||+||.+|+++++++++.+.++|++ +++.|++++|+++++||++||+|+++||+||++|||++|++|
T Consensus 319 wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~-~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S 397 (542)
T cd00684 319 WDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVS 397 (542)
T ss_pred ccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHH
Confidence 9999999999999999999999999999888888887 899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHHHHHHH
Q 008817 407 SGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKAL 486 (552)
Q Consensus 407 ~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~eeA~~~i 486 (552)
+|++++++++++++|+.+|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|||++++
T Consensus 398 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i 477 (542)
T cd00684 398 IGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEI 477 (542)
T ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999998778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhcCC
Q 008817 487 RIQVDNAWKDINEELLSP-TAVSLPLLERILNLARVCHFMYEDGDRYTQP-LLMKDQVALVLKDP 549 (552)
Q Consensus 487 ~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~-~~~k~~i~~l~~~p 549 (552)
+++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.| +.||++|++||++|
T Consensus 478 ~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 478 KKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 999999999999999987 7899999999999999999999999999999 78999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=1.9e-138 Score=1169.37 Aligned_cols=483 Identities=24% Similarity=0.412 Sum_probs=460.5
Q ss_pred hhccccchhHHHHHHHhCcccccHHHHHHHHHHHHhhccCCC-CCCCChhhhHHHHHHhhhcCccccccccccccccccc
Q 008817 61 ADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDN-IGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGK 139 (552)
Q Consensus 61 ~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~-~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g~ 139 (552)
|.++++++++||+||||||+|||++||+++|+++|++|.++. +...|+++|||+|||||||||+||||||++|+|+ +
T Consensus 267 p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~-~- 344 (784)
T PLN02279 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAED-H- 344 (784)
T ss_pred cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-c-
Confidence 678999999999999999999999999999999999986531 2247999999999999999999999999999965 4
Q ss_pred ccccc---hhhHHHHHhHHhhcccCCCCcchHHHHHHHHHHHHHhhhhc-------CCCcHHHHHHHhccCCccccchhh
Q 008817 140 FKASM---INDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSH-------ASPNLAEQINHALKLPLRKALPRL 209 (552)
Q Consensus 140 F~~~l---~~d~~glL~LyeAs~l~~~gE~iL~ea~~ft~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~~~rl 209 (552)
|++++ .+||+||||||||||+++|||+|||||+.||++||++.+++ ++++|+++|+|||++|||+++|||
T Consensus 345 F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~Rl 424 (784)
T PLN02279 345 FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERL 424 (784)
T ss_pred ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHH
Confidence 99988 59999999999999999999999999999999999998874 467899999999999999999999
Q ss_pred HHHHhHHhhcCCCC------------CCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhccCCCChhhhhhHHHHHHHH
Q 008817 210 EARYFLDVCSRGDR------------HDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWI 277 (552)
Q Consensus 210 ear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~ 277 (552)
|||+||++|++++. +|++||||||+|||+||++||+||++++|||+++|| .++||||||++|||||+
T Consensus 425 EaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~a 503 (784)
T PLN02279 425 ANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSA 503 (784)
T ss_pred HHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHH
Confidence 99999999999885 899999999999999999999999999999999999 69999999999999999
Q ss_pred HhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhhccCC-ccCcCChhHHHHHHHHHHHHHHHHHH
Q 008817 278 LMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIG-AIDTLPEYMKFIYKSLLDVYDKAEES 356 (552)
Q Consensus 278 ~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~-~~~~lPe~mk~~~~al~~~~~ei~~~ 356 (552)
+|++|||++|.+|++|||.+++++++||+||+|||.||+++||+||+|||.+ .++.+|+|||+||.+|++++++++.+
T Consensus 504 -aa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~ 582 (784)
T PLN02279 504 -AATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDK 582 (784)
T ss_pred -HHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 56999999999999999999999866
Q ss_pred -HHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcc
Q 008817 357 -LAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKK 435 (552)
Q Consensus 357 -~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~ 435 (552)
+.++|+ ++++|++++|++++++|++||+|+++||+||+||||+|+.+|+|+++++.++++++|+.+|+++++| .++
T Consensus 583 ~~~~qGr--~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~-~~~ 659 (784)
T PLN02279 583 AFTWQGR--NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDS-PEL 659 (784)
T ss_pred HHHHcCc--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhC-cch
Confidence 557776 6999999999999999999999999999999999999999999999999989999999999999999 699
Q ss_pred hHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHH
Q 008817 436 PKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQH--GVSEEEAKKALRIQVDNAWKDINEELLSP--TAVSLPL 511 (552)
Q Consensus 436 p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~--g~S~eeA~~~i~~~i~~~wk~ln~e~l~~--~~~p~~~ 511 (552)
|+|+++++.|+||+|||+||++|+++|++ |+|+|||+|+ |+|+|||+++++++|+++||+||++++++ +++|++|
T Consensus 660 ~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~ 738 (784)
T PLN02279 660 HKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPREC 738 (784)
T ss_pred hHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Confidence 99999999999999999999999999998 9999999996 89999999999999999999999999964 5799999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCchhHHHHHHHhhcCCcCC
Q 008817 512 LERILNLARVCHFMYEDGDRYTQPLLMKDQVALVLKDPVTL 552 (552)
Q Consensus 512 ~~~~~n~aR~~~~~Y~~~D~~t~~~~~k~~i~~l~~~pi~~ 552 (552)
++++||++|++++||+++||||.+ .||++|++||++||++
T Consensus 739 ~~~~ln~aR~~~~~Y~~~Dgyt~~-~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 739 KDLFWKMSKVLHLFYRKDDGFTSN-DMMSLVKSVIYEPVSL 778 (784)
T ss_pred HHHHHHHHHhhhhheeCCCCCChH-HHHHHHHHHhccCCcC
Confidence 999999999999999999999975 7999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1.9e-110 Score=938.12 Aligned_cols=445 Identities=23% Similarity=0.382 Sum_probs=404.5
Q ss_pred hhccccchhHHHHHHHhCcccccHHHHHHHHHHHHhhccCCC------CCCCChhhhHHHHHHhhhcCcccccccccccc
Q 008817 61 ADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDN------IGGDDFYTLSLSFRLLRQQGVKISCDVFEKFK 134 (552)
Q Consensus 61 ~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~------~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~ 134 (552)
|.+++++|++||+||||||+|||++||+++|+++|++|.++. ....|+++|||+|||||||||+||||||++|+
T Consensus 307 P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~ 386 (800)
T PLN02592 307 PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFE 386 (800)
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhc
Confidence 679999999999999999999999999999999999886521 11369999999999999999999999999998
Q ss_pred cccccccccc---hhhHHHHHhHHhhcccCCCCcchHHHHHHHHHHHHHhhhh--c------CCCcHHHHHHHhccCCcc
Q 008817 135 NNEGKFKASM---INDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVS--H------ASPNLAEQINHALKLPLR 203 (552)
Q Consensus 135 d~~g~F~~~l---~~d~~glL~LyeAs~l~~~gE~iL~ea~~ft~~~L~~~~~--~------~~~~l~~~V~~aL~~P~~ 203 (552)
+ +|+|++.+ .+|++|||+||||||+++|||.|||+|+.||++||++.+. + ++++|+++|+|||++|||
T Consensus 387 ~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~ 465 (800)
T PLN02592 387 K-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWY 465 (800)
T ss_pred C-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhh
Confidence 6 89998765 8999999999999999999999999999999999999863 1 357899999999999999
Q ss_pred ccchhhHHHHhHHhhcCCCCC-------------CHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhccCCCChhhhhhH
Q 008817 204 KALPRLEARYFLDVCSRGDRH-------------DKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRI 270 (552)
Q Consensus 204 ~~~~rlear~yI~~y~~~~~~-------------n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ 270 (552)
+++||||||+||++|++++++ |++||||||+|||+||++||+||++++|||+++|| .+|||||||+
T Consensus 466 ~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~ 544 (800)
T PLN02592 466 ASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSEL 544 (800)
T ss_pred cCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHH
Confidence 999999999999999987764 99999999999999999999999999999999999 5999999999
Q ss_pred HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHh--------hccCCccCcCCh-----
Q 008817 271 VELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVK--------RWDIGAIDTLPE----- 337 (552)
Q Consensus 271 ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~--------rWd~~~~~~lPe----- 337 (552)
+|||||+ +|++|||+||.+|+++||.+++++++||+||+|||+||+++||++|+ |||.+++++||+
T Consensus 545 ve~Yfwa-~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~ 623 (800)
T PLN02592 545 LLAYFLA-AASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSV 623 (800)
T ss_pred HHHHHHH-HHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccch
Confidence 9999999 99999999999999999999999999999999999999999999997 899999999988
Q ss_pred -hHHHHHHHHHHHHHHHHH-HHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH
Q 008817 338 -YMKFIYKSLLDVYDKAEE-SLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA 415 (552)
Q Consensus 338 -~mk~~~~al~~~~~ei~~-~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~ 415 (552)
|||+||.||++++|+++. .+..+|+ ++.+|++++|.++|+ +|..+|+ +|+|.+.++++
T Consensus 624 ~~mki~f~aLy~tineia~~a~~~qGr--~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~ 683 (800)
T PLN02592 624 KTGEELVGLLLGTLNQLSLDALEAHGR--DISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVK 683 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHH
Confidence 999999999999999975 4555666 699999999999998 5666665 44566666677
Q ss_pred HHh-hcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 008817 416 SFV-DMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHG-VSEEEAKKALRIQVDNA 493 (552)
Q Consensus 416 ~~~-~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g-~S~eeA~~~i~~~i~~~ 493 (552)
+++ .+|..+|+|+++ +|++.++++.+.||+||++||++|+.. .| +|+ +|.+++.+.|+.+
T Consensus 684 ~~~l~~g~~lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~-------------~~~~~~-~a~~~~~~~ie~~ 745 (800)
T PLN02592 684 TINLTAGRSLSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH-------------INTYNP-EEKSKTTPSIESD 745 (800)
T ss_pred HHHHhcCCCCCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------------CCcccH-HHHHHHHHHHHHH
Confidence 776 569999999764 799999999999999999999998841 23 455 8999999999999
Q ss_pred HHHHHHHhcC-C-CCCCHHHHHHHHHHHhhhhhhcccCCCCCCchhHHHHHHHhhcCCcC
Q 008817 494 WKDINEELLS-P-TAVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVLKDPVT 551 (552)
Q Consensus 494 wk~ln~e~l~-~-~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~k~~i~~l~~~pi~ 551 (552)
++++.+.+++ . +.+|++|++.|||++| +||.. ||+.|.+|+.+|+.++++||+
T Consensus 746 ~~eL~~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~--~~~~~~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 746 MQELVQLVLQNSSDDIDPVIKQTFLMVAK---SFYYA--AYCDPGTINYHIAKVLFERVA 800 (800)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHH---HHHHh--hcCCHHHHHHHHHHHhCCCCC
Confidence 9999999996 3 4699999999999999 56665 999998999999999999985
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=2.2e-57 Score=432.73 Aligned_cols=175 Identities=53% Similarity=0.830 Sum_probs=149.8
Q ss_pred cccccccc-----CCchhhhhHHHHHHHHHHHHHHHHHHhhchhccccchhHHHHHHHhCcccccHHHHHHHHHHHHhhc
Q 008817 24 WGNHFLKS-----ASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHL 98 (552)
Q Consensus 24 W~~~f~~~-----~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~ 98 (552)
|||+||++ +++.....+.+.+++++||++||.||.....|++++|+|||+||||||+|||++||+++|++||+.|
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~ 80 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW 80 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence 99999942 2221234567889999999999999987545899999999999999999999999999999999998
Q ss_pred cCCCCCCCChhhhHHHHHHhhhcCcccccccccccccccccccccchhhHHHHHhHHhhcccCCCCcchHHHHHHHHHHH
Q 008817 99 DNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTH 178 (552)
Q Consensus 99 ~~~~~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LyeAs~l~~~gE~iL~ea~~ft~~~ 178 (552)
........||++|||+|||||||||+||||||++|+|++|+|+.++.+||+||||||||||+++|||+|||||+.||++|
T Consensus 81 ~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~ 160 (183)
T PF01397_consen 81 DEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKH 160 (183)
T ss_dssp TTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHH
T ss_pred cccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 65432345999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCC---CcHHHHHHHhc
Q 008817 179 LKSMVSHAS---PNLAEQINHAL 198 (552)
Q Consensus 179 L~~~~~~~~---~~l~~~V~~aL 198 (552)
|++.+++.. ++|+++|+|||
T Consensus 161 L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 161 LKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHhccCCCCcHHHHHHHHHhC
Confidence 999998553 34999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=8.2e-49 Score=395.60 Aligned_cols=269 Identities=28% Similarity=0.425 Sum_probs=247.1
Q ss_pred HHHHHhhhhHHHHHhhHHHHHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcc
Q 008817 228 LLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDT 307 (552)
Q Consensus 228 lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~ 307 (552)
+|+|||+|||.||.+||+|++++++||+++|+..+.+.+|+|++.++|+. ++++++|+.+..|+++||+++|+|++||+
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~-~aa~~~P~~~~~l~~~a~~~~w~f~~DD~ 79 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGL-LAARFYPDSSDELLAAADWMAWLFIFDDF 79 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHH-HHHHHSGCGHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhh-hhheeCCCcHHHHHHHHhhchheeeeeec
Confidence 68999999999999999999999999999999767777899999999999 88888899777777999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHHHH
Q 008817 308 FDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKE-GRSSYGVKYVKQTMEESIMMYFSEAK 386 (552)
Q Consensus 308 fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~-g~~~~~~~~l~~~w~~~~~a~l~EAk 386 (552)
||.+|+.++++.++++++||++...+.+|+.+++++.++.++++++...+.+. ++. .+..+|+++|.+|++++++|++
T Consensus 80 ~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 158 (270)
T PF03936_consen 80 FDDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRR-DQIKRFRNSWREYLNAYLWEAR 158 (270)
T ss_dssp HHTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccc-HHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987788899999999999999999997666553 221 2567899999999999999999
Q ss_pred HhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcc
Q 008817 387 WLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPS 466 (552)
Q Consensus 387 W~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n 466 (552)
|+..|++||++||++.|+.|+|+++++.++++++|..++++..+++...|.+.++++.+++|+|||+||+||+++|+.+|
T Consensus 159 ~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N 238 (270)
T PF03936_consen 159 WRERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHN 238 (270)
T ss_dssp HHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HhccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhccccc
Confidence 99999999999999999999999999999999998777777777767778899999999999999999999999999999
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008817 467 AVECYMKQHGVSEEEAKKALRIQVDNAWKDIN 498 (552)
Q Consensus 467 ~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln 498 (552)
+|.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 239 ~v~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 239 LVVVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=2.7e-46 Score=379.97 Aligned_cols=283 Identities=50% Similarity=0.889 Sum_probs=265.2
Q ss_pred hhHHHHHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHH
Q 008817 242 AHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFV 321 (552)
Q Consensus 242 ~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft 321 (552)
.||+|++++++||+++||....+++|.+...+|+|+ ++++|+|+.+..|+++||+++|+|++||+||.+++.+++..++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~-a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~ 79 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWA-AGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFT 79 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHH-HHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHH
Confidence 599999999999999999766669999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhh
Q 008817 322 EAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEG 401 (552)
Q Consensus 322 ~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~ 401 (552)
++++||+....+.+|+++++++.++.++++++...+.+.++. ....++++.|.++++++.+|++|+..|++||++||+.
T Consensus 80 ~~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~ 158 (284)
T cd00868 80 EAVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGS-ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLE 158 (284)
T ss_pred HHHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 999999998889999999999999999999998777765565 6899999999999999999999999999999999999
Q ss_pred hhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHH
Q 008817 402 VALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEE 481 (552)
Q Consensus 402 ~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~ee 481 (552)
+|+.|+|+++++.++++++|..+|++.+.+.+....+++.++.+++|+||++||+||+.+|+.+|+|.|||+++|+|.++
T Consensus 159 ~R~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~e 238 (284)
T cd00868 159 NRRVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEE 238 (284)
T ss_pred hceehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHH
Confidence 99999999999999999999999995554558889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHhhhhhhc
Q 008817 482 AKKALRIQVDNAWKDINEELLSP-TAVSLPLLERILNLARVCHFMY 526 (552)
Q Consensus 482 A~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~~n~aR~~~~~Y 526 (552)
|++++.++++++|+++++.+.+. .+.|+.+++.+.|.+|.....|
T Consensus 239 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 239 ALEELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999864 3688999999999999887655
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=3.6e-34 Score=295.03 Aligned_cols=250 Identities=19% Similarity=0.146 Sum_probs=217.0
Q ss_pred HHHHH-HHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHH-HHHHHHHHHHhhhcccccC-CCHHHHHHHH
Q 008817 245 KEVSD-MTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRI-FMSKLISMISILDDTFDAY-GTYDELKLFV 321 (552)
Q Consensus 245 ~El~~-lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl-~laK~~~l~~iiDD~fD~~-gt~eEl~~ft 321 (552)
.+++. ...|.++.|+.. -+.+|+++..++|+. +++++.|+++.+|+ ..|+++.|+|++||+||.. +++++++.++
T Consensus 13 ~~~~~~~~~w~~~~~l~~-~~~~~~~~~~~~~~~-~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~ 90 (303)
T cd00687 13 KEAQDEYLEWVLEEMLIP-SEKAEKRFLSADFGD-LAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGV 90 (303)
T ss_pred HHHHHHHHHHHHHcCCCC-cchhHHHHhcCCHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHH
Confidence 44444 456999997743 357999999999999 77778899999999 7779999999999999987 4899999999
Q ss_pred HHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhh
Q 008817 322 EAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEG 401 (552)
Q Consensus 322 ~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~ 401 (552)
+.+.++.......-|....++..++.+++.++...... ....++++.|.+++.|+++|++|+.+|++||++||++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~r~~~~~~~-----~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~ 165 (303)
T cd00687 91 TRLLDILRGDGLDSPDDATPLEFGLADLWRRTLARMSA-----EWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLE 165 (303)
T ss_pred HHHHhccCCCCCCCCCCCCHHHHHHHHHHHHhccCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence 98888544322111467788999999999998644322 3588999999999999999999999999999999999
Q ss_pred hhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHh-hcCCCcchHHHHHHhcCCCHH
Q 008817 402 VALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQ-KRGHIPSAVECYMKQHGVSEE 480 (552)
Q Consensus 402 ~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~-~rG~~~n~V~cyMke~g~S~e 480 (552)
+|+.|+|+.+++.++++++|..+|+++.+. +...+++++++.+++|+|||+||+||. +.|+.+|+|.|+|+++|+|.|
T Consensus 166 ~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~ 244 (303)
T cd00687 166 MRRFNIGADPCLGLSEFIGGPEVPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLE 244 (303)
T ss_pred HhhhcccccccHHHHHHhcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHH
Confidence 999999999999999999999999998765 555669999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 008817 481 EAKKALRIQVDNAWKDINEELL 502 (552)
Q Consensus 481 eA~~~i~~~i~~~wk~ln~e~l 502 (552)
+|++++.++++++++++.+..-
T Consensus 245 eA~~~~~~~~~~~~~~f~~~~~ 266 (303)
T cd00687 245 EAISVVRDMHNERITQFEELEA 266 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.97 E-value=8.2e-31 Score=225.11 Aligned_cols=94 Identities=39% Similarity=0.687 Sum_probs=91.2
Q ss_pred hhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhh-cccCCCCCCc-h
Q 008817 459 QKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFM-YEDGDRYTQP-L 536 (552)
Q Consensus 459 ~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~-Y~~~D~~t~~-~ 536 (552)
++|||++|+|+|||||||+|+|||++++++||+++||+||+|+++++++|.+++++++|+||+++|+ |+++||||.+ +
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~ 80 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHG 80 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcH
Confidence 4799999999999999999999999999999999999999999999999999999999999999999 9999999988 7
Q ss_pred hHHHHHHHhhcCCcCC
Q 008817 537 LMKDQVALVLKDPVTL 552 (552)
Q Consensus 537 ~~k~~i~~l~~~pi~~ 552 (552)
.+|++|++||++|||+
T Consensus 81 ~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 81 KLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHhccCCCC
Confidence 8999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.85 E-value=7.5e-21 Score=184.95 Aligned_cols=227 Identities=26% Similarity=0.257 Sum_probs=183.0
Q ss_pred hhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHH
Q 008817 279 MGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLA 358 (552)
Q Consensus 279 ~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~ 358 (552)
+++++.|+.+..|..++++.+|++++||++|..++..........+ .....|..+...+..+.+.++++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (243)
T cd00385 4 LAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELAREGS 77 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhCCC
Confidence 5667889889999999999999999999999888766555444332 1234577777888888888888854322
Q ss_pred HcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHH
Q 008817 359 KEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKI 438 (552)
Q Consensus 359 ~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l 438 (552)
. ....++.+.|.+++.|+..|+.|... ..||++||+..+..++ +.++..++..+++...++ ..+.+....+
T Consensus 78 ----~-~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 148 (243)
T cd00385 78 ----P-EALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLVGALCLLGAGLSGGE--AELLEALRKL 148 (243)
T ss_pred ----H-HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHhCCC--HHHHHHHHHH
Confidence 2 46889999999999999999999876 8899999999999998 455555666666665555 3334566778
Q ss_pred HHHHHHHhHHccCccchHHHhhcC-CCcchHHHHHHhcCC------------CHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008817 439 VVAAQTIGRLMDDIASHEFEQKRG-HIPSAVECYMKQHGV------------SEEEAKKALRIQVDNAWKDINEELLSPT 505 (552)
Q Consensus 439 ~~~~~~i~RL~NDI~S~~kE~~rG-~~~n~V~cyMke~g~------------S~eeA~~~i~~~i~~~wk~ln~e~l~~~ 505 (552)
....+.+.+|.||+.|+.+|.++| +..|++.++|+++|+ +.++|.+++..+++++|+++++......
T Consensus 149 ~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (243)
T cd00385 149 GRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSLP 228 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 899999999999999999999996 678999999999998 8899999999999999999998776533
Q ss_pred CCCHHHHHHHHHHHh
Q 008817 506 AVSLPLLERILNLAR 520 (552)
Q Consensus 506 ~~p~~~~~~~~n~aR 520 (552)
..+..+++.+.+++|
T Consensus 229 ~~~~~~~~~~~~~~~ 243 (243)
T cd00385 229 DVPRALLALALNLYR 243 (243)
T ss_pred HHHHHHHHHHHHHhC
Confidence 456777777777654
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.78 E-value=0.0005 Score=72.36 Aligned_cols=227 Identities=14% Similarity=0.101 Sum_probs=126.7
Q ss_pred cccCCCcchh-HHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHH
Q 008817 281 AYYEPKYAFG-RIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAK 359 (552)
Q Consensus 281 ~~feP~~s~~-Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~ 359 (552)
++-.|..+.. ++.+|=..++++++||.++.. .+++..|-+-+-. ... ... ++..++.+.+.++- +
T Consensus 75 ~~~y~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq~-Q~~-----p~L~~~~~~L~~~~----~ 140 (376)
T PF06330_consen 75 VYCYPHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQP-QKH-----PLLDGFASLLREMW----R 140 (376)
T ss_dssp HHHSTTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T----SS-----HHHHHHHHHHHHHH----T
T ss_pred EeecCCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CCC-CCC-----HHHHHHHHHHHHHH----H
Confidence 3444666654 447888899999999998765 4666666654433 111 111 33344444444442 2
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHH
Q 008817 360 EGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIV 439 (552)
Q Consensus 360 ~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~ 439 (552)
.=++ ++-.-+.++--+++.+...|.+.. ...|.-..|-..-|.=+|+..+.+...+- ...-|+. ..+..++
T Consensus 141 ~fgp-f~anmI~~STLdFi~g~~LE~~~f--~~~p~A~~FP~fLR~ktGlsEaYA~FiFP-k~~fpe~-----~~~~~y~ 211 (376)
T PF06330_consen 141 HFGP-FCANMIVKSTLDFINGCWLEQKNF--HGSPGAPDFPDFLRRKTGLSEAYAFFIFP-KALFPEV-----EYFIQYT 211 (376)
T ss_dssp TS-H-HHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT---TTTS-TT-----TTHHHHH
T ss_pred Hcch-HHHHHHHHHHHHHHHHHHhhcccC--CCCCCCccccHHHHhccCcchhheeeecc-cccCChH-----HHHHHHH
Confidence 2233 566677888889999999997643 33455445555555666777666543332 1222322 2233332
Q ss_pred ---HHHHHHhHHccCccchHHHhh-cCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 008817 440 ---VAAQTIGRLMDDIASHEFEQK-RGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERI 515 (552)
Q Consensus 440 ---~~~~~i~RL~NDI~S~~kE~~-rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ 515 (552)
--....+-++|||.||=||.- .|+..|.|.-+-.-+|+|.-+|...+.+-.-++-+++.+...... | ..++.+
T Consensus 212 ~AIpdl~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~vL~~~d--p-~ll~a~ 288 (376)
T PF06330_consen 212 PAIPDLMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRRVLSDKD--P-ELLAAW 288 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHTTS---H-HHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhccCC--h-HHHHHH
Confidence 333344458899999999987 788899998888778999999999986666666666665443211 2 334444
Q ss_pred HHHHhhhhhhcccCCCCC
Q 008817 516 LNLARVCHFMYEDGDRYT 533 (552)
Q Consensus 516 ~n~aR~~~~~Y~~~D~~t 533 (552)
-++++..-.++-....|.
T Consensus 289 ~~Fi~GYi~~H~~~~RYR 306 (376)
T PF06330_consen 289 DSFIQGYIAFHTSNPRYR 306 (376)
T ss_dssp HHHHHHHHHHHHHSGGGT
T ss_pred HHHHHHHHHhhcCCCccC
Confidence 445544433333333333
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.66 E-value=0.0016 Score=67.76 Aligned_cols=218 Identities=15% Similarity=0.089 Sum_probs=128.1
Q ss_pred hhcccCCC--cchhHH-HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHH
Q 008817 279 MGAYYEPK--YAFGRI-FMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEE 355 (552)
Q Consensus 279 ~a~~feP~--~s~~Rl-~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~ 355 (552)
+++.-.|. .|..=+ .++-..+.++++||.-|.. .+.++.|.+-+.. + .....| +...+.+.+..+-+
T Consensus 71 v~~~~Y~w~~~skev~~~isi~~tY~~~lDD~~~e~--~~~m~~f~~dL~~--G-~~qkhP-----~l~~v~~~l~~~lr 140 (357)
T cd00686 71 VGMVVYSWAKVSKECMADLSIHYTYTLVLDDSKDDP--YPTMVNYFDDLQA--G-REQAHP-----WWALVNEHFPNVLR 140 (357)
T ss_pred hceEEeeccCCCHHHHHHHHHHHheeeEeccccccc--chHHHHHHHHHhc--C-CCCCCc-----HHHHHHHHHHHHHH
Confidence 44422244 555544 5566667888999997654 3456666665553 1 111223 11222222222211
Q ss_pred HHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcc
Q 008817 356 SLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKK 435 (552)
Q Consensus 356 ~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~ 435 (552)
-- |+ ++-.-+.++--+++.+.+.|.. +-+..|.-.+|-...+.=+|.+-+.++..+ |++.|.-...+
T Consensus 141 ---~f-Gp-F~s~~IikSTLdFv~g~~iEq~--nf~~~p~A~~fP~ylR~ksGl~E~yA~FiF------Pk~~FpE~~~~ 207 (357)
T cd00686 141 ---HF-GP-FCSLNLIRSTLDFFEGCWIEQY--NFGGFPGSHDYPQFLRRMNGLGHCVGASLW------PKEQFNERSLF 207 (357)
T ss_pred ---Hh-hh-hhHHHHHHHHHHHHHHHHHhhh--ccCCCCCCcccchHHHhccCCcceeEEEec------chhhCchHhhH
Confidence 11 33 5666677888899999998866 344477777787777777776655543333 33332211222
Q ss_pred hHHHHHHHH---HhHHccCccchHHHhhc-CCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 008817 436 PKIVVAAQT---IGRLMDDIASHEFEQKR-GHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPL 511 (552)
Q Consensus 436 p~l~~~~~~---i~RL~NDI~S~~kE~~r-G~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~ 511 (552)
..+..+... ..-++|||.||=||.-. ++-.|.|.-|.+-+|+|..+|.+.+..-.-.+-+++.+- |.+.. | .+
T Consensus 208 ~qi~~AIp~~~~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~V-Lse~d-p-~l 284 (357)
T cd00686 208 LEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV-FSDKD-P-QV 284 (357)
T ss_pred HHhhHHHHHHHHHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH-hcCCC-h-HH
Confidence 333333333 34588999999999854 456788888888899999999998877666666676654 43322 2 33
Q ss_pred HHHHHHHHhhh
Q 008817 512 LERILNLARVC 522 (552)
Q Consensus 512 ~~~~~n~aR~~ 522 (552)
++.+-++++..
T Consensus 285 ~~av~~Fi~GY 295 (357)
T cd00686 285 MDTIECFMHGY 295 (357)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 12
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=91.45 E-value=5.2 Score=40.40 Aligned_cols=198 Identities=18% Similarity=0.149 Sum_probs=104.1
Q ss_pred chhHHHHHHHHHHHHhhhcccccCCCHH----HHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008817 288 AFGRIFMSKLISMISILDDTFDAYGTYD----ELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRS 363 (552)
Q Consensus 288 s~~Rl~laK~~~l~~iiDD~fD~~gt~e----El~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~ 363 (552)
...|-.+.-+-.|.-.+||+-|...... .++-+-+++...-....+..|....++..++..+.....
T Consensus 17 ~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~~~~~~--------- 87 (267)
T PF00494_consen 17 KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADLVRRYG--------- 87 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHHHCCSH---------
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHHHHHHh---------
Confidence 4555566677788888999999766432 244455555542211111222334566655555433321
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcH-HHHHhhhcchHHHHHH
Q 008817 364 SYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATK-EAFEWLIKKPKIVVAA 442 (552)
Q Consensus 364 ~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~-e~~e~~~~~p~l~~~~ 442 (552)
--++.+.+++.|+.+. .....++|++|+......+.|....+.+..++... ++ +..+ .....
T Consensus 88 -----l~~~~l~~li~~~~~d---l~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~--~~~~~~~-------~a~~l 150 (267)
T PF00494_consen 88 -----LPREPLLELIDGMEMD---LEFTPYETFADLERYCYYVAGSVGLLLLQLLGAHD--PDEAARD-------AARAL 150 (267)
T ss_dssp -----HHHHHHHHHHHHHHHC---TT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSST--SHHHHHH-------HHHHH
T ss_pred -----hhHHHHHHHHHHhccc---ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc--chhhHHH-------HHHHH
Confidence 2334456667776533 33355789999999999888887777666665431 22 2222 23344
Q ss_pred HHHhHHccCccchHHH-hhcCCC--cchHHHHHHhcCCCHHHHHHH----------HHHHHHHHHHHHHHHhcCCCCC-C
Q 008817 443 QTIGRLMDDIASHEFE-QKRGHI--PSAVECYMKQHGVSEEEAKKA----------LRIQVDNAWKDINEELLSPTAV-S 508 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE-~~rG~~--~n~V~cyMke~g~S~eeA~~~----------i~~~i~~~wk~ln~e~l~~~~~-p 508 (552)
+..+-+.|=+...... ..+|.+ +. =.|.++|+|.++-... +..+++.+...+.+..--...+ |
T Consensus 151 G~alql~nilRd~~~D~~~~gR~ylP~---d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~ 227 (267)
T PF00494_consen 151 GRALQLTNILRDIPEDALRRGRIYLPL---DDLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPP 227 (267)
T ss_dssp HHHHHHHHHHHTHHHH-HHTT---S-H---HHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--
T ss_pred HHHHHHHHHHHHhHHHHHhcccccCCc---hhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444444444444555 556654 32 2478899988765432 3455555554444433223346 4
Q ss_pred HHHHHH
Q 008817 509 LPLLER 514 (552)
Q Consensus 509 ~~~~~~ 514 (552)
..+.-.
T Consensus 228 ~~~~~~ 233 (267)
T PF00494_consen 228 PRARPA 233 (267)
T ss_dssp TTHHHH
T ss_pred HhhhHH
Confidence 434333
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=91.43 E-value=2.5 Score=41.63 Aligned_cols=118 Identities=13% Similarity=0.116 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcc-cchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHH
Q 008817 366 GVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALG-SSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQT 444 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~-S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 444 (552)
....+.+....++.|...+..|... ..||.++|++.... |+++.-..+..-...+. -+++..+ ...++-+..++
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~lG~ 160 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSG-ADDEQAE---ALKDYGRALGL 160 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC-cCHHHHH---HHHHHHHHHHH
Confidence 5666778889999999999888654 57999999999888 66655443322222222 2222222 23456778888
Q ss_pred HhHHccCccchHHHh----------hcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 445 IGRLMDDIASHEFEQ----------KRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 445 i~RL~NDI~S~~kE~----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
..-+.||+..+.... ++|.. +...+++ .+.+.+.++++++.+..
T Consensus 161 a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~ 214 (236)
T cd00867 161 AFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEA 214 (236)
T ss_pred HHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 889999998876554 55665 5666666 55566666666655544
No 14
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=87.33 E-value=23 Score=35.73 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhh--cCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVD--MGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.....+.+.....+.+-..+..|... ..||.++|++....-+|.....+....+ .| .+++..+ ..-++-+..
T Consensus 108 ~~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~--~~~~~~~---~l~~~g~~l 181 (259)
T cd00685 108 RALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAG--ADEEEAE---ALKRFGRNL 181 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHH---HHHHHHHHH
Confidence 46677788888899998888888654 5799999999987777666443322211 22 2343332 234566777
Q ss_pred HHHhHHccCccchHHH-----------hhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 443 QTIGRLMDDIASHEFE-----------QKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
++..-+.||+..+... ...|.. |.+.+|.. .+.+...++++++.+..
T Consensus 182 G~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~-T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 182 GLAFQIQDDILDLFGDPETLGKPVGSDLREGKC-TLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHHHhhcccCChHHHCCCcchHHHcCCc-hHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 7788888998766432 223333 55555544 55666667777666554
No 15
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=86.21 E-value=41 Score=34.10 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHhhhcccccCCCHHH----HHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 008817 289 FGRIFMSKLISMISILDDTFDAYGTYDE----LKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSS 364 (552)
Q Consensus 289 ~~Rl~laK~~~l~~iiDD~fD~~gt~eE----l~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~ 364 (552)
..|-.++-+-.+.-.+||+=|..+++++ |+-+-+++..-... -| -.++..++.+++... +.
T Consensus 18 ~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~g----~~--~~pv~~al~~~~~~~--------~l- 82 (266)
T TIGR03465 18 ERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLYAG----AP--SHPVARALADPARRF--------DL- 82 (266)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhCC----CC--CChHHHHHHHHHHHc--------CC-
Confidence 3444555667777789999997554433 22222333321111 12 124555555544332 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQT 444 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~ 444 (552)
. ++.+.+++.++.+.. .....+|++|+......+.|.-..+++-.++.. ++.... .....+.
T Consensus 83 -~----~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~vg~l~~~llg~~---~~~~~~-------~a~~lG~ 144 (266)
T TIGR03465 83 -P----QEDFLEVIDGMEMDL---EQTRYPDFAELDLYCDRVAGAVGRLSARIFGAT---DARTLE-------YAHHLGR 144 (266)
T ss_pred -C----HHHHHHHHHHHHHHc---CCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC---ChhHHH-------HHHHHHH
Confidence 1 234566667765333 344678999988888777776666555444322 122221 2222333
Q ss_pred HhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 008817 445 IGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEE---------EAKKALRIQVDNAWKDINEELLSPTAVSLPLLERI 515 (552)
Q Consensus 445 i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~e---------eA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ 515 (552)
..-|.|=+.......++|.+- +=.=.|.++|+|.+ ...+-+..+++.+..-+.+..--...+|......+
T Consensus 145 AlqltnilRdv~eD~~~gR~y-lP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~~~~~ 223 (266)
T TIGR03465 145 ALQLTNILRDVGEDARRGRIY-LPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAA 223 (266)
T ss_pred HHHHHHHHHHhHHHHhCCCee-cCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhhhHHH
Confidence 333333222223445577651 11124677898876 33455566666666555544322345776444333
Q ss_pred HHH
Q 008817 516 LNL 518 (552)
Q Consensus 516 ~n~ 518 (552)
+-.
T Consensus 224 ~~~ 226 (266)
T TIGR03465 224 RAM 226 (266)
T ss_pred HHH
Confidence 333
No 16
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=78.26 E-value=94 Score=32.65 Aligned_cols=86 Identities=12% Similarity=-0.017 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.....+.+....++.+-+.+..|.. ...+|.++|++.-..=+|..+..++ .-...| .+++..+. .-++-...
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag--~~~~~~~~---l~~~G~~l 206 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQF-DSDLSLEDYLEKSFYKTASLVAASSKAAAVLSD--VPSQVAND---LYEYGKHL 206 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcC--cCHHHHHH---HHHHHHHH
Confidence 4567778888888988887877643 3357999999976555554433221 222223 45544433 24566778
Q ss_pred HHHhHHccCccchH
Q 008817 443 QTIGRLMDDIASHE 456 (552)
Q Consensus 443 ~~i~RL~NDI~S~~ 456 (552)
++..-+.||+..+.
T Consensus 207 G~aFQi~DDild~~ 220 (322)
T TIGR02749 207 GLAFQVVDDILDFT 220 (322)
T ss_pred HHHHHHHHHhccCC
Confidence 88889999998875
No 17
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=75.88 E-value=95 Score=31.49 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHhhhcccccC-CCHHH----HHHHHHHHhh-ccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCC
Q 008817 289 FGRIFMSKLISMISILDDTFDAY-GTYDE----LKLFVEAVKR-WDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGR 362 (552)
Q Consensus 289 ~~Rl~laK~~~l~~iiDD~fD~~-gt~eE----l~~ft~ai~r-Wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~ 362 (552)
..|..+.-+-.|.=++||+-|.. ++.++ |+-+-+.+.. ... -|. .++..++.+++.+. +
T Consensus 18 ~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~~~g-----~~~--~pv~~aL~~~~~~~--------~ 82 (266)
T TIGR03464 18 RLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAIYSG-----EPA--APVFVALARTVQRH--------G 82 (266)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHhCC-----CCC--ChHHHHHHHHHHHc--------C
Confidence 34444455666777899999975 44443 3333333332 111 121 24566666655433 1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhc
Q 008817 363 SSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDM 420 (552)
Q Consensus 363 ~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~ 420 (552)
. . ++.+.+++.++... ......+|++|.......+.|.-..+++..++.
T Consensus 83 l--~----~~~~~~li~~~~~D---l~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g~ 131 (266)
T TIGR03464 83 L--P----IEPFLDLLDAFRQD---VVVTRYATWAELLDYCRYSANPVGRLVLDLYGA 131 (266)
T ss_pred C--C----hHHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcCC
Confidence 1 1 13344555565422 234457799999888888888776666555543
No 18
>PLN02890 geranyl diphosphate synthase
Probab=73.15 E-value=1.1e+02 Score=33.70 Aligned_cols=88 Identities=11% Similarity=-0.035 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHH--hhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASF--VDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~--~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.++..+.++...++.+-+.+..|.. ...+|.++|++....-+|.....++.. +..| .+++..+.+ -.+-+..
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilag--a~~~~~~~l---~~fG~~l 300 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILAG--QTAEVAVLA---FEYGRNL 300 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--cCHHHHHHH---HHHHHHH
Confidence 5677888999999999999988864 456899999987555555443332211 2223 455555443 3566777
Q ss_pred HHHhHHccCccchHHH
Q 008817 443 QTIGRLMDDIASHEFE 458 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE 458 (552)
++..-+.||+..|.-.
T Consensus 301 GlAFQI~DDiLD~~g~ 316 (422)
T PLN02890 301 GLAFQLIDDVLDFTGT 316 (422)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 8888999999887543
No 19
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=70.10 E-value=1e+02 Score=32.37 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHH--hhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASF--VDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~--~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.....+.+.....+.+-..+-.+.... +|.++|++.-..=+|.....+... +..| .+++..+.+ -..-+..
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~--~~~~~~~~l---~~~g~~l 206 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAG--ADEELLEAL---EDYGRNL 206 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHh
Confidence 467778889999999998888876555 999999999666555554433222 2223 234555443 4567778
Q ss_pred HHHhHHccCccchHHHhh-cCCC---------cchHHHHHHhcCCC
Q 008817 443 QTIGRLMDDIASHEFEQK-RGHI---------PSAVECYMKQHGVS 478 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE~~-rG~~---------~n~V~cyMke~g~S 478 (552)
+++.-+.|||..+.-+.+ -|+. .++..++.-+.+..
T Consensus 207 GlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 207 GLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred hHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 888899999988876422 2332 46777777665433
No 20
>PLN02857 octaprenyl-diphosphate synthase
Probab=68.96 E-value=66 Score=35.18 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.+...+.+...+++.+-+.+..+.. +..+|.++|++....=+|.-...++ .-+..| .+++..+.+ -++-+..
T Consensus 227 ~~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallag--a~~~~~~~l---~~fG~~L 300 (416)
T PLN02857 227 EVIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFSG--VDSSVKEQM---YEYGKNL 300 (416)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 4566777888888888877877754 4457999999986655554433222 112223 455544332 4566777
Q ss_pred HHHhHHccCccchH
Q 008817 443 QTIGRLMDDIASHE 456 (552)
Q Consensus 443 ~~i~RL~NDI~S~~ 456 (552)
++..-+.||+..+.
T Consensus 301 GiAFQI~DDiLD~~ 314 (416)
T PLN02857 301 GLAFQVVDDILDFT 314 (416)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888999998875
No 21
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=68.20 E-value=4.2 Score=38.20 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=26.0
Q ss_pred hcCCCcchHHHHHHhc-CCCHHHHHHHHHH
Q 008817 460 KRGHIPSAVECYMKQH-GVSEEEAKKALRI 488 (552)
Q Consensus 460 ~rG~~~n~V~cyMke~-g~S~eeA~~~i~~ 488 (552)
.||..+..|.||+-++ +.|.++|.+++++
T Consensus 119 GRtRSaTvV~cYLmq~~~wtpe~A~~~vr~ 148 (183)
T KOG1719|consen 119 GRTRSATVVACYLMQHKNWTPEAAVEHVRK 148 (183)
T ss_pred CCccchhhhhhhhhhhcCCCHHHHHHHHHh
Confidence 4677789999999987 9999999999988
No 22
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=66.52 E-value=1.5e+02 Score=29.86 Aligned_cols=199 Identities=17% Similarity=0.151 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHHhhhcccccCCCH-----HHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCC
Q 008817 289 FGRIFMSKLISMISILDDTFDAYGTY-----DELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRS 363 (552)
Q Consensus 289 ~~Rl~laK~~~l~~iiDD~fD~~gt~-----eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~ 363 (552)
..|..+.-+-.|.-.+||+=|..... ..|+-+-+++..-... ..|. .++..++..+..+. +.
T Consensus 24 ~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~---~~~~--~pv~~al~~~~~~~--------~l 90 (265)
T cd00683 24 ELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWG---GAPT--HPVLRALADLARRY--------GI 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcC---CCCC--ChHHHHHHHHHHHc--------CC
Confidence 44555556667777899999975532 2344444444432111 1121 25566666654422 11
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHH
Q 008817 364 SYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQ 443 (552)
Q Consensus 364 ~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~ 443 (552)
-++.+.+++.++..... ....||++|.......+.|....+++..++.+ -+++... .....+
T Consensus 91 ------~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~--~~~~~~~-------~A~~lG 152 (265)
T cd00683 91 ------PREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVFGAS--SDEAALE-------RARALG 152 (265)
T ss_pred ------CHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC--CChHHHH-------HHHHHH
Confidence 12445666777754433 45678998888887777776655555445432 1222222 222333
Q ss_pred HHhHHccCccchHHHhhcCCC--cchHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 008817 444 TIGRLMDDIASHEFEQKRGHI--PSAVECYMKQHGVSEEEA---------KKALRIQVDNAWKDINEELLSPTAVSLPLL 512 (552)
Q Consensus 444 ~i~RL~NDI~S~~kE~~rG~~--~n~V~cyMke~g~S~eeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~ 512 (552)
...-|.|=+.......++|-+ +.- -|.++|+|.++- ..-+..+++.+.+-+....-....+|....
T Consensus 153 ~AlqltnilRdv~eD~~~gR~YlP~d---~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~ 229 (265)
T cd00683 153 LALQLTNILRDVGEDARRGRIYLPRE---ELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSR 229 (265)
T ss_pred HHHHHHHHHHHHHHHHccCCCcCCHH---HHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhH
Confidence 333333322222333456653 322 367788887653 234455555555544443322345775554
Q ss_pred HHHHHHHhh
Q 008817 513 ERILNLARV 521 (552)
Q Consensus 513 ~~~~n~aR~ 521 (552)
-.++-++.+
T Consensus 230 ~~~~~~~~~ 238 (265)
T cd00683 230 FCVRAAAML 238 (265)
T ss_pred HHHHHHHHH
Confidence 444444433
No 23
>PLN02632 phytoene synthase
Probab=64.11 E-value=2e+02 Score=30.42 Aligned_cols=194 Identities=12% Similarity=0.097 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhhhcccccCCCH----HHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchh
Q 008817 291 RIFMSKLISMISILDDTFDAYGTY----DELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYG 366 (552)
Q Consensus 291 Rl~laK~~~l~~iiDD~fD~~gt~----eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~ 366 (552)
|..+.-+-.|.-.+||+=|..... ..|+..-+.+..--. .-|. .++..++.+++.+.. - .
T Consensus 75 R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~~~----g~~~--~pv~~aL~~~~~~~~-------L---~ 138 (334)
T PLN02632 75 RKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDLFD----GRPY--DMLDAALADTVSKFP-------L---D 138 (334)
T ss_pred HHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHHhC----CCCC--ChHHHHHHHHHHHCC-------C---C
Confidence 334445666777889999964432 234333333333111 1121 145666666554431 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHh
Q 008817 367 VKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIG 446 (552)
Q Consensus 367 ~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~ 446 (552)
. +.+.+++.++.... .....+|++|+......+.|.--.+++..++.....+. ..+.+ .......+...
T Consensus 139 ~----~~~~~li~g~~~Dl---~~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~-~~~~~---~~~A~~lG~Al 207 (334)
T PLN02632 139 I----QPFRDMIEGMRMDL---VKSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPESKA-STESV---YNAALALGIAN 207 (334)
T ss_pred h----HHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCcccc-chHHH---HHHHHHHHHHH
Confidence 2 33456666765332 23457799888888777777666555555543321110 00111 11122233333
Q ss_pred HHccCccchHHHhhcCCCcchHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 008817 447 RLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEA---------KKALRIQVDNAWKDINEELLSPTAVSLPLL 512 (552)
Q Consensus 447 RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~eeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~ 512 (552)
-|.|=+........+|-+- +=.=.|.++|+|.++- ..-+..++..+..-+.+..--...+|..+.
T Consensus 208 QltNILRDv~eD~~~GRvY-LP~e~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r 281 (334)
T PLN02632 208 QLTNILRDVGEDARRGRVY-LPQDELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASR 281 (334)
T ss_pred HHHHHHHHHHHHHhCCcee-CCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhH
Confidence 3333222223445677641 0012467899998872 233445555544433333211234776544
No 24
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=54.08 E-value=2.8e+02 Score=29.00 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.....+.++....+.+-..+..|.. +..+|.++|++.-..-+|..+..++ .-+..| .+++..+.+ -++-+..
T Consensus 129 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag--~~~~~~~~l---~~~g~~l 202 (319)
T TIGR02748 129 RAHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAASCQLGAIASG--ANEAIVKKL---YWFGYYV 202 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 4566778888889999888887743 3457999999887666665433321 112123 344433322 4456677
Q ss_pred HHHhHHccCccchH
Q 008817 443 QTIGRLMDDIASHE 456 (552)
Q Consensus 443 ~~i~RL~NDI~S~~ 456 (552)
++..-+.||+..+.
T Consensus 203 G~aFQI~DDilD~~ 216 (319)
T TIGR02748 203 GMSYQITDDILDFV 216 (319)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888999997764
No 25
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=51.23 E-value=16 Score=28.00 Aligned_cols=29 Identities=38% Similarity=0.370 Sum_probs=22.3
Q ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHH
Q 008817 463 HIPSAVECYMKQHGVSEEEAKKALRIQVD 491 (552)
Q Consensus 463 ~~~n~V~cyMke~g~S~eeA~~~i~~~i~ 491 (552)
-+.-++.+.|..+|+|+++|.+.+++.-.
T Consensus 14 ~I~~AkgiLm~~~g~~e~~A~~~Lr~~Am 42 (56)
T PF03861_consen 14 VIEQAKGILMARYGLSEDEAYRLLRRQAM 42 (56)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 34567888999999999999999988654
No 26
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=48.11 E-value=16 Score=35.60 Aligned_cols=45 Identities=33% Similarity=0.298 Sum_probs=31.8
Q ss_pred HHccCccchHHHhhcC-CCcchHHHHHHhcCCCHHHHHHHHHHHHH
Q 008817 447 RLMDDIASHEFEQKRG-HIPSAVECYMKQHGVSEEEAKKALRIQVD 491 (552)
Q Consensus 447 RL~NDI~S~~kE~~rG-~~~n~V~cyMke~g~S~eeA~~~i~~~i~ 491 (552)
.|--++..+|+..+.- .+.-+=.+.|+++|+|++||+.+++++-=
T Consensus 129 ~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM 174 (194)
T COG3707 129 ALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAM 174 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4555666666665433 23445557899999999999999998643
No 27
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=44.62 E-value=4e+02 Score=27.99 Aligned_cols=86 Identities=14% Similarity=-0.029 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhh---cCCCCcHHHHHhhhcchHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVD---MGDIATKEAFEWLIKKPKIVVA 441 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~---~G~~l~~e~~e~~~~~p~l~~~ 441 (552)
.....+.++....+.+-..+..|.. +..+|.++|+.....-+|.....+ +..| .| .+++..+. .-.+-+.
T Consensus 130 ~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~i~~KTa~lf~~~-~~~ga~lag--~~~~~~~~---l~~~g~~ 202 (323)
T PRK10888 130 KVLEVMSEAVNVIAEGEVLQLMNVN-DPDITEENYMRVIYSKTARLFEAA-AQCSGILAG--CTPEQEKG---LQDYGRY 202 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 4566778888888998888887754 345899999998766655553322 2222 23 34443332 3456677
Q ss_pred HHHHhHHccCccchHH
Q 008817 442 AQTIGRLMDDIASHEF 457 (552)
Q Consensus 442 ~~~i~RL~NDI~S~~k 457 (552)
.++..-+.||+..+..
T Consensus 203 lG~aFQi~DD~ld~~~ 218 (323)
T PRK10888 203 LGTAFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHHHHhhcccC
Confidence 7888889999988753
No 28
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.37 E-value=33 Score=34.84 Aligned_cols=185 Identities=16% Similarity=0.239 Sum_probs=98.7
Q ss_pred hcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhh-cc--C--------CccCcCChhHHHHHHHHHH
Q 008817 280 GAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKR-WD--I--------GAIDTLPEYMKFIYKSLLD 348 (552)
Q Consensus 280 a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~r-Wd--~--------~~~~~lPe~mk~~~~al~~ 348 (552)
-.+|+|.|..+++ +.++.+|+|++|-+=|- .+.+..+..-+.| .. + ..++.|++..|+ .+=.+
T Consensus 86 ~~~Fd~s~D~e~i-F~~~gALifvIDaQddy---~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ki--etqrd 159 (347)
T KOG3887|consen 86 MDFFDPSFDYEMI-FRGVGALIFVIDAQDDY---MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKI--ETQRD 159 (347)
T ss_pred cccCCCccCHHHH-HhccCeEEEEEechHHH---HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhh--hhHHH
Confidence 3568999999976 47999999999875431 3334444444544 22 1 457889888775 22223
Q ss_pred HHHHHHHHHHHcCCC----ch----hH-HHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH---H
Q 008817 349 VYDKAEESLAKEGRS----SY----GV-KYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA---S 416 (552)
Q Consensus 349 ~~~ei~~~~~~~g~~----~~----~~-~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~---~ 416 (552)
+..+..+++...|-- ++ +. +-.-+++.+.++-. -...||+|--|.+=..+++..-.+.. +
T Consensus 160 I~qr~~d~l~d~gle~v~vsf~LTSIyDHSIfEAFSkvVQkL--------ipqLptLEnlLnif~s~S~ieKafLFDv~S 231 (347)
T KOG3887|consen 160 IHQRTNDELADAGLEKVQVSFYLTSIYDHSIFEAFSKVVQKL--------IPQLPTLENLLNIFISNSKIEKAFLFDVLS 231 (347)
T ss_pred HHHHhhHHHHhhhhccceEEEEEeeecchHHHHHHHHHHHHH--------hhhchhHHHHHHHHhhccchhhhhhhhhhh
Confidence 333333333332210 00 11 11223333333222 24578888877776666655422110 0
Q ss_pred -HhhcCCC--CcHHHHHhh-------------------hcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHh
Q 008817 417 -FVDMGDI--ATKEAFEWL-------------------IKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQ 474 (552)
Q Consensus 417 -~~~~G~~--l~~e~~e~~-------------------~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke 474 (552)
.+...+. +.-..+|-+ ..-+..-+-++.+.||.|+..-|-+|..++-. +| |.|++
T Consensus 232 KIYiaTDS~PVdmq~YElC~d~IDV~iDl~~iYg~~~~~~~s~~d~~s~svirL~n~~vlyLrev~k~LA--LV-~i~re 308 (347)
T KOG3887|consen 232 KIYIATDSSPVDMQSYELCCDMIDVTIDLSSIYGLKEDGKGSDYDKESSSVIRLNNTTVLYLREVNKFLA--LV-CIVRE 308 (347)
T ss_pred eeEEecCCCcchhHHHHHHHhhhheeeehHHhhCCCCCCCCCchhhhhhhhhhhcCceEEeHHHhhhheE--EE-EEEcc
Confidence 0000111 111111110 12244556677888999999999999887643 44 88998
Q ss_pred cCCCHHH
Q 008817 475 HGVSEEE 481 (552)
Q Consensus 475 ~g~S~ee 481 (552)
.|.-.+.
T Consensus 309 ~~~e~~g 315 (347)
T KOG3887|consen 309 DGFEKKG 315 (347)
T ss_pred CCccccc
Confidence 8775543
No 29
>CHL00151 preA prenyl transferase; Reviewed
Probab=39.98 E-value=4.6e+02 Score=27.43 Aligned_cols=87 Identities=10% Similarity=-0.053 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.....+.+....++.+-+.+..|.. ..-+|.++|+..-..=+|.....++ .-+..| .+++..+. .-.+-+..
T Consensus 134 ~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~G~~l 207 (323)
T CHL00151 134 EVVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD--ADEKDHND---FYLYGKHL 207 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 3566778888888888777766643 3457999999974444443333221 122223 34443333 24566778
Q ss_pred HHHhHHccCccchHH
Q 008817 443 QTIGRLMDDIASHEF 457 (552)
Q Consensus 443 ~~i~RL~NDI~S~~k 457 (552)
++..-+.||+..+.-
T Consensus 208 G~aFQi~DDilD~~~ 222 (323)
T CHL00151 208 GLAFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHHHhhccc
Confidence 888899999988753
No 30
>PRK10581 geranyltranstransferase; Provisional
Probab=33.16 E-value=5.1e+02 Score=26.86 Aligned_cols=112 Identities=16% Similarity=0.088 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 375 EESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 375 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
..++.+-..+..|.. ..+|.++|++.-..=+|.....++ .-+..|.. +++..+. ..++-+..++..-+.|||
T Consensus 152 ~~l~~GQ~ld~~~~~--~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~-~~~~~~~---l~~~g~~lG~aFQI~DDi 225 (299)
T PRK10581 152 AGMCGGQALDLEAEG--KQVPLDALERIHRHKTGALIRAAVRLGALSAGDK-GRRALPV---LDRYAESIGLAFQVQDDI 225 (299)
T ss_pred chhhHhhHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCC-cHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 346666666777743 468999999875543333332221 11222321 2233332 245677788888999999
Q ss_pred cchHHH-----------hhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 453 ASHEFE-----------QKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 453 ~S~~kE-----------~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
..+... ..+|.. +.+.++- .+.|.+.+++.++++.+.+..
T Consensus 226 lD~~g~~~~~GK~~g~Dl~~gk~-T~p~l~~------~e~a~~~a~~~~~~A~~~l~~ 276 (299)
T PRK10581 226 LDVVGDTATLGKRQGADQQLGKS-TYPALLG------LEQARKKARDLIDDARQSLDQ 276 (299)
T ss_pred ccccCChHHHCCCcchhhhcCCC-CHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 987432 222333 5554443 467888888888888766655
No 31
>smart00400 ZnF_CHCC zinc finger.
Probab=30.70 E-value=58 Score=24.71 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=21.1
Q ss_pred CCCcchHHHHHHhcCCCHHHHHHHH
Q 008817 462 GHIPSAVECYMKQHGVSEEEAKKAL 486 (552)
Q Consensus 462 G~~~n~V~cyMke~g~S~eeA~~~i 486 (552)
|...+.|..+|+-.|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 4556889999998899999999875
No 32
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=29.01 E-value=6e+02 Score=25.45 Aligned_cols=108 Identities=20% Similarity=0.127 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHh-hcCCCCChHHHhhhhcccchhHHHHHHHH--hhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 376 ESIMMYFSEAKWL-HEGFLPKIEEYEGVALGSSGVLTLATASF--VDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 376 ~~~~a~l~EAkW~-~~g~iPtleEYl~~~~~S~g~~~~~~~~~--~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
..+.+..-|.... ..+..+|.++|++.-..-+|......+.. ...| .+++..+. .-++-...++..-+.||+
T Consensus 114 ~~~~~~~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag--~~~~~~~~---l~~~g~~lG~afQi~DD~ 188 (260)
T PF00348_consen 114 ALIEGEIGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLGAILAG--ADEEQIEA---LREFGRHLGIAFQIRDDL 188 (260)
T ss_dssp HHHHHHHHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SGHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hcccceeehhhccccccccccHHHHHHHHhhcchHHHHHHHHHHHHhcc--chhHHHHH---HHHHHHHHHHHHhhhhhh
Confidence 3444444343222 23347899999999777777664332222 2223 34444433 356777888888899998
Q ss_pred cchHHHh-----------hcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 008817 453 ASHEFEQ-----------KRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWK 495 (552)
Q Consensus 453 ~S~~kE~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk 495 (552)
..+.... .+|.. |...++.-|. +.+..+.++.+..+
T Consensus 189 ~d~~~~~~~~gK~~~~Dl~~gk~-Tlp~~~al~~------~~~~~~~~l~~~~~ 235 (260)
T PF00348_consen 189 LDLFGDEEELGKPVGSDLKEGKP-TLPVLHALER------AREELRELLQEAYG 235 (260)
T ss_dssp HHHHSHHHHHSSTTTHHHHTTTS-SHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred hhccCcHHHhcccchhHHhcCcc-cHHHHHHHHh------CHHHHHHHHHHHHc
Confidence 8876532 22333 5555555433 44445555554443
No 33
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=28.80 E-value=45 Score=22.27 Aligned_cols=18 Identities=50% Similarity=0.800 Sum_probs=14.3
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 008817 470 CYMKQHGVSEEEAKKALR 487 (552)
Q Consensus 470 cyMke~g~S~eeA~~~i~ 487 (552)
-|.++||+|.||..+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 488999999999666554
No 34
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.06 E-value=91 Score=31.71 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=41.0
Q ss_pred cccccccccchhhHHHHHhHHhhcccCCCCcchHHHHHHHHHHHHHhhhhcCCCcHHHHHHHhcc
Q 008817 135 NNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQINHALK 199 (552)
Q Consensus 135 d~~g~F~~~l~~d~~glL~LyeAs~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~l~~~V~~aL~ 199 (552)
+.+|-|....+-|+||-..|-++-- .... +-|=.|+.||++||. +.+-+++|++-|.
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlN------desTpK~ir~ll~ 320 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLN------DESTPKSIRHLLE 320 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcC------CCCChHHHHHHhc
Confidence 5789998888899999999988643 2222 356789999999984 3345666666553
No 35
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=26.25 E-value=2e+02 Score=25.78 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=45.4
Q ss_pred hhHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCC-----CCCh--hhhHHHHHHhhhcCcccccccccccccccccc
Q 008817 68 LHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIG-----GDDF--YTLSLSFRLLRQQGVKISCDVFEKFKNNEGKF 140 (552)
Q Consensus 68 l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~-----~~dl--~~~al~FRLLR~hGy~vS~dvf~~F~d~~g~F 140 (552)
-.+|+.|++|||++--- ..| +|=.-.+.... ...| -.+|++-|.||.+| +|-----++ ++ +|.=
T Consensus 14 ~~~ie~L~~lgi~R~vA----~tl--v~L~~~~E~sS~~IE~~sgLRQPEVSiAMr~Lre~g-WV~~R~eKK-kG-KGRP 84 (124)
T COG4738 14 YEIIELLRILGIPRNVA----TTL--VCLAKGDEASSREIERVSGLRQPEVSIAMRYLRENG-WVDEREEKK-KG-KGRP 84 (124)
T ss_pred HHHHHHHHHcCCCchHH----HHH--HHHhcCcchhhhhhHHhhcCCCchhHHHHHHHHHcc-ccchHHhcc-cC-CCCC
Confidence 46899999999998632 222 22211111000 1122 47899999999999 776655555 43 3432
Q ss_pred -cc-cchhhHHHHHhHHh
Q 008817 141 -KA-SMINDVQVMLSLYE 156 (552)
Q Consensus 141 -~~-~l~~d~~glL~Lye 156 (552)
|. .|+.+...+++-++
T Consensus 85 ik~Y~Lt~~~~eIvs~ie 102 (124)
T COG4738 85 IKLYRLTVPFDEIVSEIE 102 (124)
T ss_pred ceEEEecCcHHHHHHHHH
Confidence 21 34555555555444
No 36
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=26.24 E-value=66 Score=29.02 Aligned_cols=23 Identities=48% Similarity=0.528 Sum_probs=19.1
Q ss_pred chHHHHHHhcCCCHHHHHHHHHH
Q 008817 466 SAVECYMKQHGVSEEEAKKALRI 488 (552)
Q Consensus 466 n~V~cyMke~g~S~eeA~~~i~~ 488 (552)
-=|.+.|.|.|+|.++|++.+.+
T Consensus 86 eDIkLV~eQa~VsreeA~kAL~e 108 (122)
T COG1308 86 EDIKLVMEQAGVSREEAIKALEE 108 (122)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH
Confidence 34678999999999999987754
No 37
>smart00463 SMR Small MutS-related domain.
Probab=26.07 E-value=79 Score=25.63 Aligned_cols=23 Identities=39% Similarity=0.371 Sum_probs=20.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 008817 475 HGVSEEEAKKALRIQVDNAWKDI 497 (552)
Q Consensus 475 ~g~S~eeA~~~i~~~i~~~wk~l 497 (552)
||++.++|+..+...++++++.-
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~ 29 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKG 29 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 79999999999999999888753
No 38
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=26.02 E-value=8.2e+02 Score=26.01 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=64.9
Q ss_pred HhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 008817 417 FVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKD 496 (552)
Q Consensus 417 ~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ 496 (552)
-++..+.++++..+.+.+ .-.=+.+-+..|++=....+.....|+. |.|..| -+.+++.+.+.-.++++-+.
T Consensus 199 a~A~~p~~t~~~a~~i~~--aYFPwI~gLHILLDy~IDq~EDr~~GdL-NFv~YY-----~~~~~~~~Rl~~f~~~A~~~ 270 (330)
T PF10776_consen 199 AYAADPDLTPEDAEKIKD--AYFPWICGLHILLDYFIDQEEDREGGDL-NFVFYY-----PDEEEMEERLKYFVEKALEQ 270 (330)
T ss_pred HHHcCCCCCHHHHHHHHH--cccHHHHHHHHHHHHHhhhHhHhcCCCc-eeeeeC-----CCHHHHHHHHHHHHHHHHHH
Confidence 344567788887766532 1112333444555555554555566666 999765 46889999999999988877
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCchhHHHHHHHhh
Q 008817 497 INEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVL 546 (552)
Q Consensus 497 ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~k~~i~~l~ 546 (552)
..+ +|.+--.+.++ |.+--||-.++.=..+..++..-+.|+
T Consensus 271 ~~~-------Lp~~~fHr~iv--~GLla~YLSD~K~~~~~~~~~~ak~Ll 311 (330)
T PF10776_consen 271 ASR-------LPYPKFHRMIV--RGLLAMYLSDPKVRSQPNVRPVAKRLL 311 (330)
T ss_pred HHh-------CCCchHHHHHH--HHHHHHHhCCHhhccchhhHHHHHHHH
Confidence 654 55433333333 334457876655333333344444443
No 39
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=23.81 E-value=79 Score=25.86 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=20.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 475 HGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 475 ~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
||++.+||...+...+.++++.-..
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~ 28 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIR 28 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHS
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999999999865443
No 40
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=23.77 E-value=1.5e+02 Score=29.33 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhc-cccchhHHHHHHHhCcccc--cHHHHHHHHHHHHhhccCCCCCCCChhhhHHHHH
Q 008817 40 ATTQELYEALKQEVRMMITATADK-IADKLHLIDAVQRLGVAYH--FEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFR 116 (552)
Q Consensus 40 ~~~~~~~~~lk~~vr~~l~~~~~d-~~~~l~lID~lqrLGi~~h--F~~EI~~~L~~i~~~~~~~~~~~~dl~~~al~FR 116 (552)
+.++.+.++++.-+|.|..+ ..+ .-....++++|+.||=..- .+.+|..+|...=. -+..++=.+-
T Consensus 12 ~~~~~~l~Kl~K~~k~~~~~-g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~----------~l~El~~~~~ 80 (215)
T cd07604 12 EGDRVGLQKLKKAVKAIHNS-GLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSV----------FTKELAALFK 80 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 45677889999999999975 444 4568899999999993221 23357777644321 2344555567
Q ss_pred HhhhcCcccccccccccccc
Q 008817 117 LLRQQGVKISCDVFEKFKNN 136 (552)
Q Consensus 117 LLR~hGy~vS~dvf~~F~d~ 136 (552)
.|++|=-++-...+.+|..+
T Consensus 81 ~L~~~~~~~i~~pL~~f~k~ 100 (215)
T cd07604 81 NLMQNLNNIIMFPLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77877666666778888644
No 41
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=22.44 E-value=85 Score=29.62 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=25.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 008817 470 CYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLP 510 (552)
Q Consensus 470 cyMke~g~S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~ 510 (552)
.-|++.|.|..+ |+..|++.||+ .+.+|++-|+|
T Consensus 125 ~~~~~~Gks~~e----IR~~ID~kYk~---g~~~pTpTp~P 158 (158)
T PF13798_consen 125 VQMYQEGKSPKE----IRQYIDEKYKE---GYAKPTPTPMP 158 (158)
T ss_pred HHHHHcCCCHHH----HHHHHHHHHHh---CCCCCCCCCCC
Confidence 357778888665 99999999974 47777766654
No 42
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=22.29 E-value=1.3e+02 Score=30.65 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=48.8
Q ss_pred chHHHhhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH----------HhcCCCCCCHHHHHHHHHHHhh
Q 008817 454 SHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE----------ELLSPTAVSLPLLERILNLARV 521 (552)
Q Consensus 454 S~~kE~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~----------e~l~~~~~p~~~~~~~~n~aR~ 521 (552)
.|++|++- +++++..+...|.+.++|.+.++--+++.+-.+=. +.|...++|.-.+..+.++||=
T Consensus 96 ~wk~~qka---~klle~aaekl~~~~ee~~~~vg~~L~e~fG~~y~aFE~aa~~g~~~l~~~~~~~~~~~~l~e~a~e 170 (269)
T COG1093 96 EWKKEQKA---DKLLELAAEKLGKDLEEAYEEVGWKLEEEFGSLYDAFEAAAKEGGEVLDDEGVPEEWKEVLKEIARE 170 (269)
T ss_pred HHHHHHHH---HHHHHHHHHHhCCCHHHHHHHHhHHHHHHhCCHHHHHHHHHhcCCcccccCCCCHHHHHHHHHHHHh
Confidence 45666653 67888889889999999999998888777654432 3333446888899999999873
No 43
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=22.22 E-value=90 Score=31.27 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=36.4
Q ss_pred HHhCcccccHHHHHHHHHHHHhhccCCCCCCCChhhhHHHHHHhhhcCcccccccccccccc
Q 008817 75 QRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNN 136 (552)
Q Consensus 75 qrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~ 136 (552)
+.|||+ ++|....-...|+.+ ++.-+=|+.+||..+.|.|+.|-++
T Consensus 47 eklgi~---~e~a~~L~~~~yk~Y-------------G~t~aGL~~~~~~~d~deY~~~V~~ 92 (244)
T KOG3109|consen 47 EKLGIS---EEEAEELRESLYKEY-------------GLTMAGLKAVGYIFDADEYHRFVHG 92 (244)
T ss_pred HHhCCC---hhhhHHHHHHHHHHH-------------hHHHHHHHHhcccCCHHHHHHHhhc
Confidence 578877 566766666667765 6777899999999999999999853
No 44
>KOG3906 consensus Tryptophan 2,3-dioxygenase [Amino acid transport and metabolism]
Probab=21.68 E-value=94 Score=31.84 Aligned_cols=106 Identities=22% Similarity=0.216 Sum_probs=55.2
Q ss_pred HHHHHHHhhchhccccchhHHHHHHHhCcccccHHHHHHHHHHH-------HhhccCCCCCCCChhhhHHHHHHhhh---
Q 008817 51 QEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKI-------LDHLDNDNIGGDDFYTLSLSFRLLRQ--- 120 (552)
Q Consensus 51 ~~vr~~l~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i-------~~~~~~~~~~~~dl~~~al~FRLLR~--- 120 (552)
.-||+||...-.|-..-|++|-.|-|.-+=-..--|=-.+|+.+ |+.+..-.+ ---||.||||--
T Consensus 87 DsvR~~l~~~v~DEtktLkiVsrl~Rv~~ILkLLv~Q~~iLeTMtpLDF~DFRkYL~PAS-----GFQSLQFRllENKlG 161 (399)
T KOG3906|consen 87 DSVRKLLNNTVVDETKTLKIVSRLDRVTKILKLLVEQITILETMTPLDFVDFRKYLTPAS-----GFQSLQFRLLENKLG 161 (399)
T ss_pred HHHHHHhcchhhcchhHHHHHHhHHHHHHHHHHHHHHhhHHhhcCccchHHHHHhcCccc-----cchhhhHHHHhhhhh
Confidence 67899998655566667777777766532211111111223322 333321111 134899999842
Q ss_pred ------cCccc--ccccccccccccccccccchhhHHHHHhHHhhcccCCCCc
Q 008817 121 ------QGVKI--SCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGE 165 (552)
Q Consensus 121 ------hGy~v--S~dvf~~F~d~~g~F~~~l~~d~~glL~LyeAs~l~~~gE 165 (552)
-.|+- =.|||+ |++-+-. ..++.-++||+|-++=--++||=
T Consensus 162 Vlqe~Rv~YN~qhY~dvF~---dee~~~l-~~sE~eksLLeLve~WLERTPGL 210 (399)
T KOG3906|consen 162 VLQERRVKYNAQHYKDVFN---DEELKTL-NVSEEEKSLLELVESWLERTPGL 210 (399)
T ss_pred hhhhhhccccHHHhhhccC---chhhHhh-hcccccchHHHHHHHHHhcCCCC
Confidence 12221 134443 4432111 11566778999988877777763
No 45
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=21.00 E-value=3.1e+02 Score=26.20 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=53.3
Q ss_pred cCCCcchhHH-HHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcC
Q 008817 283 YEPKYAFGRI-FMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEG 361 (552)
Q Consensus 283 feP~~s~~Rl-~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g 361 (552)
+||+|-..-. ..|---++--+=|.+-|-..-++.......||+ .|++++|.+-+..+.++
T Consensus 91 ~E~~fqeLn~ka~aLk~iLSriPdEinDR~~FLeTIK~IASaIK-------------------kLLd~vN~v~~~~p~t~ 151 (207)
T KOG4025|consen 91 YEQDFQELNKKAIALKRILSRIPDEINDRHAFLETIKLIASAIK-------------------KLLDAVNAVYRIVPLTA 151 (207)
T ss_pred CCccHHHHHHHHHHHHHHHHhCcHhhhhHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhhccccc
Confidence 5666654322 333233344444555555544444444443333 36778888866666666
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcc
Q 008817 362 RSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALG 405 (552)
Q Consensus 362 ~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~ 405 (552)
+. .+.+=++.+..|.+.+- -|+.+|.+-|..
T Consensus 152 ~~--AvE~rKkEFVkYSK~FS-----------~TLKtYFKdGk~ 182 (207)
T KOG4025|consen 152 QP--AVEKRKKEFVKYSKRFS-----------NTLKTYFKDGKK 182 (207)
T ss_pred cH--HHHHHHHHHHHHHHHHH-----------HHHHHHHhCCCc
Confidence 64 77888888888877663 267778777543
No 46
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.78 E-value=5.8e+02 Score=25.93 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhchhccccchhHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCCCCChhhhHHHHHHhhhcCcccccc
Q 008817 49 LKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCD 128 (552)
Q Consensus 49 lk~~vr~~l~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~dl~~~al~FRLLR~hGy~vS~d 128 (552)
-|..+++-|..+|......+-+-..-|++|---+=.++-..+|..- .=+-|
T Consensus 54 A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-----------------------------p~~Gd 104 (250)
T COG3063 54 AKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-----------------------------PNNGD 104 (250)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-----------------------------CCccc
Confidence 3456666677667777777777777777775555444444444211 11247
Q ss_pred cccccccccccccccchhhHHHHHhHHhhcccCCCCcc--hHHHHHHH---------HHHHHHhhhhcC-CCcHHHHHHH
Q 008817 129 VFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGED--ILDEAIVF---------TTTHLKSMVSHA-SPNLAEQINH 196 (552)
Q Consensus 129 vf~~F~d~~g~F~~~l~~d~~glL~LyeAs~l~~~gE~--iL~ea~~f---------t~~~L~~~~~~~-~~~l~~~V~~ 196 (552)
|+|+| |-|-|+..+=..+|--+=+|..--.=|+. .++.+.-- ++.+|+..+... ..+. ..-
T Consensus 105 VLNNY----G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~---~~l 177 (250)
T COG3063 105 VLNNY----GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP---ALL 177 (250)
T ss_pred hhhhh----hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh---HHH
Confidence 88888 77877777777777777777765544443 34444322 235566655532 1111 111
Q ss_pred hccCCccccchhhHHHHhHHhhcCCCCCCHHHHH
Q 008817 197 ALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLK 230 (552)
Q Consensus 197 aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLe 230 (552)
.+-.+.+..=.+..||.|++.|.....-+..-|.
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~ 211 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGGAQAESLL 211 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhcccccHHHHH
Confidence 2333445556778999999999987776644443
No 47
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=20.24 E-value=83 Score=31.80 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCCcchHHHHHHhcCCCHHHHHHHHHHH
Q 008817 462 GHIPSAVECYMKQHGVSEEEAKKALRIQ 489 (552)
Q Consensus 462 G~~~n~V~cyMke~g~S~eeA~~~i~~~ 489 (552)
|-.+.++.|||-++|+|.+||++.|+..
T Consensus 182 GRTGtl~AayLI~~GmspeeAI~~VR~~ 209 (241)
T PTZ00393 182 GRAPVLASIVLIEFGMDPIDAIVFIRDR 209 (241)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4456788999999999999999999873
Done!