Query 008817
Match_columns 552
No_of_seqs 233 out of 905
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m00_A Aristolochene synthase; 100.0 4E-170 1E-174 1385.3 52.7 544 1-552 3-550 (550)
2 3g4d_A (+)-delta-cadinene synt 100.0 1E-169 4E-174 1382.6 52.4 537 9-552 17-554 (554)
3 3n0f_A Isoprene synthase; terp 100.0 2E-167 7E-172 1366.4 49.6 531 12-551 13-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 1E-161 4E-166 1328.1 52.1 535 13-551 1-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 7E-162 2E-166 1328.9 45.1 536 12-551 4-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 8E-161 3E-165 1324.5 43.5 535 9-551 30-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 2E-144 7E-149 1230.6 45.8 489 61-552 295-817 (817)
8 3s9v_A Abietadiene synthase, c 100.0 7E-144 2E-148 1221.8 48.1 486 61-551 267-785 (785)
9 3p5p_A Taxadiene synthase; cla 100.0 8E-144 3E-148 1218.1 47.7 486 61-552 243-756 (764)
10 3pya_A ENT-copalyl diphosphate 100.0 6E-109 2E-113 925.2 34.7 450 43-551 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 9E-52 3.1E-56 430.1 17.6 253 239-502 14-271 (337)
12 1di1_A Aristolochene synthase; 100.0 3.1E-49 1.1E-53 404.1 20.2 243 241-501 12-264 (300)
13 3bny_A Aristolochene synthase; 100.0 5.2E-48 1.8E-52 399.0 19.2 248 236-501 21-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 6E-46 2E-50 393.7 19.7 243 250-501 66-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 5.7E-33 1.9E-37 297.6 20.9 249 243-501 127-390 (433)
16 1yyq_A Trichodiene synthase; t 99.8 8.6E-18 2.9E-22 176.7 17.5 248 249-522 34-295 (374)
17 3sdr_A Alpha-bisabolene syntha 97.3 8.5E-05 2.9E-09 85.0 2.8 48 10-58 21-68 (817)
18 3acx_A Dehydrosqualene synthas 84.0 35 0.0012 33.7 19.2 193 289-510 38-242 (293)
19 3ipi_A Geranyltranstransferase 82.4 5.3 0.00018 40.0 9.7 142 365-521 127-278 (295)
20 3lmd_A Geranylgeranyl pyrophos 81.4 9.6 0.00033 39.3 11.4 103 365-475 160-275 (360)
21 4hd1_A Squalene synthase HPNC; 76.0 64 0.0022 31.8 20.3 154 291-481 41-199 (294)
22 3oyr_A Trans-isoprenyl diphosp 72.1 53 0.0018 33.4 13.8 105 365-476 151-268 (345)
23 3mzv_A Decaprenyl diphosphate 71.4 80 0.0027 32.0 15.0 104 365-475 139-255 (341)
24 3rmg_A Octaprenyl-diphosphate 71.3 90 0.0031 31.5 16.0 86 365-456 133-220 (334)
25 2ftz_A Geranyltranstransferase 66.0 59 0.002 32.1 12.3 120 366-499 135-264 (284)
26 3p8l_A Geranyltranstransferase 65.2 36 0.0012 34.1 10.6 109 376-499 157-279 (302)
27 3ts7_A Geranyltranstransferase 65.2 40 0.0014 34.0 11.1 110 375-497 158-280 (324)
28 1rtr_A Geranyltranstransferase 65.0 27 0.00093 34.8 9.7 111 375-499 148-271 (301)
29 1wy0_A Geranylgeranyl pyrophos 61.5 53 0.0018 33.2 11.3 103 366-475 138-253 (342)
30 3m0g_A Farnesyl diphosphate sy 61.3 23 0.0008 35.3 8.4 109 375-498 147-268 (297)
31 3pko_A Geranylgeranyl pyrophos 60.8 1E+02 0.0035 31.0 13.3 103 365-474 143-258 (334)
32 3p8r_A Geranyltranstransferase 58.6 29 0.001 34.6 8.6 112 375-499 158-282 (302)
33 3lsn_A Geranyltranstransferase 58.2 45 0.0015 33.3 9.9 109 377-498 154-275 (304)
34 4dhd_A Polyprenyl synthetase; 56.1 63 0.0022 33.0 10.8 105 366-475 133-261 (358)
35 2h8o_A Geranyltranstransferase 54.2 45 0.0015 33.8 9.2 111 375-499 192-315 (335)
36 4f62_A Geranyltranstransferase 53.0 50 0.0017 33.2 9.3 111 376-499 152-275 (317)
37 3apz_A Geranyl diphosphate syn 50.2 82 0.0028 31.9 10.5 87 365-457 153-241 (348)
38 3lom_A Geranyltranstransferase 48.8 59 0.002 32.6 9.0 112 375-498 158-282 (313)
39 1rqj_A Geranyltranstransferase 48.5 96 0.0033 30.7 10.5 111 375-499 152-276 (299)
40 3nf2_A Putative polyprenyl syn 47.6 96 0.0033 31.6 10.5 85 366-456 144-230 (352)
41 3uca_A Geranyltranstransferase 47.4 89 0.0031 31.5 10.1 111 375-499 180-304 (324)
42 3npk_A Geranyltranstransferase 45.5 1.3E+02 0.0045 29.7 10.9 111 374-498 144-265 (291)
43 3pde_A Farnesyl-diphosphate sy 44.9 81 0.0028 31.5 9.3 110 376-499 156-278 (309)
44 1wmw_A Geranylgeranyl diphosph 42.2 1.1E+02 0.0037 30.8 9.8 102 366-475 131-246 (330)
45 3llw_A Geranyltranstransferase 41.5 62 0.0021 32.4 7.8 111 375-498 159-280 (311)
46 2q80_A Geranylgeranyl pyrophos 39.7 2.9E+02 0.0098 27.2 12.6 83 365-456 111-195 (301)
47 3s9v_A Abietadiene synthase, c 34.6 15 0.00052 41.7 2.2 41 18-58 5-45 (785)
48 1pd3_A Nonstructural protein N 34.5 21 0.00071 26.2 2.1 33 44-77 16-48 (58)
49 2e8v_A Geranylgeranyl pyrophos 33.1 1.3E+02 0.0045 30.3 8.8 103 366-475 132-249 (340)
50 2qis_A Farnesyl pyrophosphate 31.0 2E+02 0.0068 29.4 9.8 105 366-475 177-298 (374)
51 1uby_A FPS, farnesyl diphospha 30.8 1.6E+02 0.0056 29.9 9.1 105 366-475 170-291 (367)
52 2j1p_A Geranylgeranyl pyrophos 30.4 49 0.0017 32.8 4.9 108 376-498 161-271 (293)
53 3tc1_A Octaprenyl pyrophosphat 24.6 3.2E+02 0.011 27.2 9.7 101 365-475 122-235 (315)
54 1yhl_A Farnesyl pyrophosphate 23.7 1.6E+02 0.0056 29.8 7.5 106 365-475 151-284 (362)
55 2ee7_A Sperm flagellar protein 23.3 83 0.0028 27.3 4.4 67 241-309 11-85 (127)
56 3aqb_B Component B of hexapren 23.0 1.9E+02 0.0065 28.8 7.8 86 365-456 130-217 (325)
57 3kra_B Geranyl diphosphate syn 22.9 94 0.0032 30.4 5.3 69 377-452 151-221 (274)
58 3vj8_A Squalene synthase; farn 22.2 6E+02 0.02 25.4 18.6 224 290-533 38-284 (343)
59 2her_A Fragment, farnesyl pyro 22.0 5E+02 0.017 26.4 10.8 86 366-456 169-260 (368)
60 1v4e_A Octoprenyl-diphosphate 21.5 2.7E+02 0.0092 27.4 8.4 84 365-458 127-212 (299)
61 3fau_A NEDD4-binding protein 2 21.0 74 0.0025 24.9 3.4 23 475-497 6-28 (82)
62 1qjt_A EH1, epidermal growth f 20.8 2.1E+02 0.0073 22.8 6.4 64 62-131 25-89 (99)
No 1
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=3.8e-170 Score=1385.26 Aligned_cols=544 Identities=46% Similarity=0.806 Sum_probs=509.9
Q ss_pred CCCCCCCC-cccccCCCCCCCCCCccccccccCCchhhhhHHHHHHHHHHHHHHHHHHhhchhccccchhHHHHHHHhCc
Q 008817 1 MSTPVPTV-VEETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGV 79 (552)
Q Consensus 1 ~~~~~~~~-~~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~d~~~~l~lID~lqrLGi 79 (552)
||++++++ ..++.||+||||||+|||+||++.+.. ...+.+.+|+++||++||+||.+...|++++|+|||+||||||
T Consensus 3 ~~~~~~~~~~~~~~R~~~~~~ps~W~d~fl~~~~~~-~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi 81 (550)
T 3m00_A 3 MASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKN-QVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGI 81 (550)
T ss_dssp -------------CCCCCCCCCCTTTTTTSCCCCCH-HHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccCCCCCCCCcccccccccccCCcc-hhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCc
Confidence 89988554 566789999999999999999975433 3456788999999999999997535789999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhccCCCCCCCChhhhHHHHHHhhhcCcccccccccccccccccccccchhhHHHHHhHHhhcc
Q 008817 80 AYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAH 159 (552)
Q Consensus 80 ~~hF~~EI~~~L~~i~~~~~~~~~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LyeAs~ 159 (552)
+|||++||+++|++||++|.+ ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||
T Consensus 82 ~~hF~~EI~~~L~~i~~~~~~----~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~ 157 (550)
T 3m00_A 82 SYHFEKEIDDILDQIYNQNSN----CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH 157 (550)
T ss_dssp GGGCHHHHHHHHHHHHHHCCC----CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHhccc----CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHh
Confidence 999999999999999998843 4799999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhhhcCCCcHHHHHHHhccCCccccchhhHHHHhHH-hhcCCCCCCHHHHHHHhhhhHH
Q 008817 160 LAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQINHALKLPLRKALPRLEARYFLD-VCSRGDRHDKSLLKFAKLDFNL 238 (552)
Q Consensus 160 l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~-~y~~~~~~n~~lLelAkldFn~ 238 (552)
+++|||+|||||+.||++||++.+++++++|+++|+|||++|||+++||||||+||+ +|++++++|++||||||||||+
T Consensus 158 l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~ 237 (550)
T 3m00_A 158 VRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNL 237 (550)
T ss_dssp TCCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 999999999999999999999998877888999999999999999999999999999 9999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHH
Q 008817 239 LQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELK 318 (552)
Q Consensus 239 ~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~ 318 (552)
||++||+||++++||||++||.++|||||||++|||||+ +|++|||+||.+|+++||+++|++++||+||+|||+|||+
T Consensus 238 ~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~-~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~ 316 (550)
T 3m00_A 238 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWT-LGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELE 316 (550)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHH-HHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHH-HHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHH
Confidence 999999999999999999999889999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 008817 319 LFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEE 398 (552)
Q Consensus 319 ~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleE 398 (552)
.||+||+|||++++++||+|||+||.+|+++++|+++++.++||+ ++++|++++|+++++||++||+|+++||+||+||
T Consensus 317 ~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EE 395 (550)
T 3m00_A 317 AYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS-HIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSE 395 (550)
T ss_dssp HHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 999999999999999999999999999999999999888899998 8999999999999999999999999999999999
Q ss_pred HhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCC
Q 008817 399 YEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVS 478 (552)
Q Consensus 399 Yl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S 478 (552)
||+||++|+|++++++++++|+ +.+|+++++|+.++|+|++++++|+||+|||+||++|++||+++|+|+|||+|+|+|
T Consensus 396 Yl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvS 474 (550)
T 3m00_A 396 YLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIS 474 (550)
T ss_dssp HHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCC
T ss_pred HHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCC
Confidence 9999999999999999998887 679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCc-hhHHHHHHHhhcCCcCC
Q 008817 479 EEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDG-DRYTQP-LLMKDQVALVLKDPVTL 552 (552)
Q Consensus 479 ~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~~-~~~k~~i~~l~~~pi~~ 552 (552)
+|||++++++||+++||+||+++++++++|+||+++++|+||++++||+++ ||||.| +.||++|++||++|||+
T Consensus 475 eEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 475 TKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999988999999999999999999999998 999999 58999999999999986
No 2
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.1e-169 Score=1382.56 Aligned_cols=537 Identities=49% Similarity=0.869 Sum_probs=499.1
Q ss_pred cccccCCCCCCCCCCccccccccCCchhhhhHHHHHHHHHHHHHHHHHHhhchhccccchhHHHHHHHhCcccccHHHHH
Q 008817 9 VEETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIE 88 (552)
Q Consensus 9 ~~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~ 88 (552)
+.++.||+||||||+|||+||++ +. +...+.+.+|+++||++||+||.+...|++++|+|||+||||||+|||++||+
T Consensus 17 ~~~~~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~ 94 (554)
T 3g4d_A 17 NKDEMRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIE 94 (554)
T ss_dssp --------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHH
T ss_pred cCCCCCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 34458999999999999999997 43 23466788999999999999997535789999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCChhhhHHHHHHhhhcCcccccccccccccccccccccchhhHHHHHhHHhhcccCCCCcchH
Q 008817 89 DELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDIL 168 (552)
Q Consensus 89 ~~L~~i~~~~~~~~~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LyeAs~l~~~gE~iL 168 (552)
++|++||++ + ..+..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+||
T Consensus 95 ~~L~~i~~~--~-~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iL 171 (554)
T 3g4d_A 95 DELENIYHN--N-NDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDIL 171 (554)
T ss_dssp HHHHHHHHS--C-CCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHhc--c-CCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHH
Confidence 999999986 1 2233799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcHHHHHHHhccCCccccchhhHHHHhHHhhcCCCCCCHHHHHHHhhhhHHHHHhhHHHHH
Q 008817 169 DEAIVFTTTHLKSMVSHASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVS 248 (552)
Q Consensus 169 ~ea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~ 248 (552)
|||+.||++||++.+.+++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||+
T Consensus 172 deA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~ 251 (554)
T 3g4d_A 172 DEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELS 251 (554)
T ss_dssp HHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999887788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhhcc
Q 008817 249 DMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWD 328 (552)
Q Consensus 249 ~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd 328 (552)
+++|||+++||.++|||||||++|||||+ +|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||
T Consensus 252 ~l~rWwk~~~l~~~L~faRdr~ve~yfw~-~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD 330 (554)
T 3g4d_A 252 EICRWWKDLDFQRKLPYARDRVVEGYFWI-SGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWD 330 (554)
T ss_dssp HHHHHHHHHCHHHHCTTCCCCHHHHHHHH-HHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCcccCCchHHHHHHHHHHH-HHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcC
Confidence 99999999999889999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccch
Q 008817 329 IGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSG 408 (552)
Q Consensus 329 ~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g 408 (552)
++++++||+|||+||.+|+++++|+++++.++||+ ++++|++++|+++++||++||+|+++||+||+||||+||++|+|
T Consensus 331 ~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg 409 (554)
T 3g4d_A 331 IKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQ-YRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCG 409 (554)
T ss_dssp GGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCT-HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSC
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeeh
Confidence 99999999999999999999999999888899998 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHHHHHHHHH
Q 008817 409 VLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRI 488 (552)
Q Consensus 409 ~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~eeA~~~i~~ 488 (552)
+++++++++++||+.+|+++++|+.++|+|++++++|+||+|||+||++|++||+++|+|+|||+|+|+|+|||++++++
T Consensus 410 ~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~ 489 (554)
T 3g4d_A 410 YAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNK 489 (554)
T ss_dssp HHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhcCCcCC
Q 008817 489 QVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQP-LLMKDQVALVLKDPVTL 552 (552)
Q Consensus 489 ~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~-~~~k~~i~~l~~~pi~~ 552 (552)
+|+++||+||++|++++++|++|+++++|+||++++||+++||||.| ..||++|++||++|||+
T Consensus 490 ~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 490 HVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 99999999999999988999999999999999999999999999999 78999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=2.1e-167 Score=1366.40 Aligned_cols=531 Identities=35% Similarity=0.630 Sum_probs=502.1
Q ss_pred ccCCCCCCCCCCccccccccCCchhhhhHHHHHHHHHHHHHHHHHHhhchh-ccccchhHHHHHHHhCcccccHHHHHHH
Q 008817 12 TVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATAD-KIADKLHLIDAVQRLGVAYHFEKEIEDE 90 (552)
Q Consensus 12 ~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~-d~~~~l~lID~lqrLGi~~hF~~EI~~~ 90 (552)
..||+||||||+|||+||++.++ +...+.+.+|+++||++||+||.+ .. +++++|+|||+||||||+|||++||+++
T Consensus 13 ~~~~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~-~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~ 90 (555)
T 3n0f_A 13 EARRSADYEPNSWDYDFLLSSDT-DESIEVYKDKAKKLEAEVRREINN-EKAEFLTLLELIDNVQRLGLGYRFESDIRRA 90 (555)
T ss_dssp ----CCCCCCCTTCHHHHTCC------CHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHTTCGGGSHHHHHHH
T ss_pred ccCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 47999999999999999997543 234667889999999999999975 55 8999999999999999999999999999
Q ss_pred HHHHHhh-----ccCCCCCCCChhhhHHHHHHhhhcCcccccccccccccccccccccchhhHHHHHhHHhhcccCCCCc
Q 008817 91 LEKILDH-----LDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGE 165 (552)
Q Consensus 91 L~~i~~~-----~~~~~~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LyeAs~l~~~gE 165 (552)
|++||+. | ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||
T Consensus 91 L~~i~~~~~~~~~-----~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE 165 (555)
T 3n0f_A 91 LDRFVSSGGFDGV-----TKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGE 165 (555)
T ss_dssp HHHHHHTCHHHHH-----TTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHhhcccccc-----ccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCc
Confidence 9999973 3 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhhh-cCCCcHHHHHHHhccCCccccchhhHHHHhHHhhcCCCCCCHHHHHHHhhhhHHHHHhhH
Q 008817 166 DILDEAIVFTTTHLKSMVS-HASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQ 244 (552)
Q Consensus 166 ~iL~ea~~ft~~~L~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq 244 (552)
+|||||+.||++||++.+. .++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||
T Consensus 166 ~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq 245 (555)
T 3n0f_A 166 NILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQ 245 (555)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhH
Confidence 9999999999999999775 567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHH
Q 008817 245 KEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAV 324 (552)
Q Consensus 245 ~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai 324 (552)
+||++++|||+++||.++|||||||++|||||+ +|++|||+||.+|+++||+++|++++||+||+|||+||++.||+||
T Consensus 246 ~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~-~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai 324 (555)
T 3n0f_A 246 RDLRETSRWWRRVGLATKLHFARDRLIESFYWA-VGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAV 324 (555)
T ss_dssp HHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHH-HHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccCCchhhHHHHHHHHH-HHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 999999999999999889999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhc
Q 008817 325 KRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVAL 404 (552)
Q Consensus 325 ~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~ 404 (552)
+|||++++++||+|||+||.+|+++++|++.++.++++. ++++|++++|+++++||++||+|+++||+||+||||+||.
T Consensus 325 ~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~-~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~ 403 (555)
T 3n0f_A 325 ERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGE-NILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAW 403 (555)
T ss_dssp HHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcc
Confidence 999999999999999999999999999998777666566 7999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHHHHH
Q 008817 405 GSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKK 484 (552)
Q Consensus 405 ~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~eeA~~ 484 (552)
+|+|+++++++++++||+.+|+++++|+.++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++
T Consensus 404 vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~ 483 (555)
T 3n0f_A 404 KSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATE 483 (555)
T ss_dssp HHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhcCCcC
Q 008817 485 ALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQP-LLMKDQVALVLKDPVT 551 (552)
Q Consensus 485 ~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~-~~~k~~i~~l~~~pi~ 551 (552)
++++||+++||+||++|++++++|++|+++++|+||++++||+++||||.| ..||++|++||++|||
T Consensus 484 ~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 484 SVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999999999988999999999999999999999999999999 6899999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.1e-161 Score=1328.14 Aligned_cols=535 Identities=31% Similarity=0.548 Sum_probs=511.8
Q ss_pred cCCCCCCCCCCccccccccCCchhhhhHHHHHHHHHHHHHHHHHHhhchhccccchhHHHHHHHhCcccccHHHHHHHHH
Q 008817 13 VRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELE 92 (552)
Q Consensus 13 ~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~ 92 (552)
.||++|||||+|||+||++.+.. ...+.+.+++++||++||+|+.+ ..|++++|+|||+||||||+|||++||+++|+
T Consensus 1 ~r~~~~~~ps~W~~~fl~~~~~~-~~~~~~~~~~~~Lk~~V~~~~~~-~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~ 78 (543)
T 2ong_A 1 MRRSGNYNPSRWDVNFIQSLLSD-YKEDKHVIRASELVTLVKMELEK-ETDQIRQLELIDDLQRMGLSDHFQNEFKEILS 78 (543)
T ss_dssp CCCCCCCCCCSSCHHHHHHCCCS-SCSTHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHH
T ss_pred CCCCCCCCCCcCCcccccCCCch-hhhhHHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHHHHHhCCchhhhHHHHHHHHH
Confidence 38999999999999999864322 33457889999999999999987 45899999999999999999999999999999
Q ss_pred HHHhhccCCC---CC-CCChhhhHHHHHHhhhcCcccccccccccccccccccccchhhHHHHHhHHhhcccCCCCcchH
Q 008817 93 KILDHLDNDN---IG-GDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDIL 168 (552)
Q Consensus 93 ~i~~~~~~~~---~~-~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LyeAs~l~~~gE~iL 168 (552)
+||++|.++. .. ..||++|||+|||||||||+||||||++|||++|+|++++++||+||||||||||+++|||+||
T Consensus 79 ~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL 158 (543)
T 2ong_A 79 SIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTL 158 (543)
T ss_dssp HHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHH
T ss_pred HHHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHH
Confidence 9999885432 12 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhc-C-CCcHHHHHHHhccCCccccchhhHHHHhHHhhcCCCCCCHHHHHHHhhhhHHHHHhhHHH
Q 008817 169 DEAIVFTTTHLKSMVSH-A-SPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKE 246 (552)
Q Consensus 169 ~ea~~ft~~~L~~~~~~-~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~E 246 (552)
|||+.||++||++.+.+ + +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+|
T Consensus 159 ~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~E 238 (543)
T 2ong_A 159 ESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEE 238 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999886 5 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhh
Q 008817 247 VSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKR 326 (552)
Q Consensus 247 l~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~r 326 (552)
|+++++||+++||.+++||||||+++||||+ +|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|
T Consensus 239 l~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~-~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~r 317 (543)
T 2ong_A 239 LKESFRWWRNTGFVEKLPFARDRLVECYFWN-TGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRR 317 (543)
T ss_dssp HHHHHHHHHHHTHHHHSCSSCCCHHHHHHTH-HHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHHHHH-HHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Confidence 9999999999999878999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhccc
Q 008817 327 WDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGS 406 (552)
Q Consensus 327 Wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S 406 (552)
||+++++++|+|||+||.++++++++++.++.+.+++ ++++|++++|++++++|++||+|+++||+||+||||++|.+|
T Consensus 318 WD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS 396 (543)
T 2ong_A 318 WDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGV-NVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQS 396 (543)
T ss_dssp TCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccc
Confidence 9999999999999999999999999999887776666 899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHHHHHHH
Q 008817 407 SGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKAL 486 (552)
Q Consensus 407 ~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~eeA~~~i 486 (552)
+|+++++++++++||..+|+++++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++++
T Consensus 397 ~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i 476 (543)
T 2ong_A 397 ISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHV 476 (543)
T ss_dssp TCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhcCCcC
Q 008817 487 RIQVDNAWKDINEEL-LSPTAVSLPLLERILNLARVCHFMYEDGDRYTQP-LLMKDQVALVLKDPVT 551 (552)
Q Consensus 487 ~~~i~~~wk~ln~e~-l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~-~~~k~~i~~l~~~pi~ 551 (552)
+++|+++||+||+++ ++++++|++|+++++|+||+++++|+++||||.| +.||++|++||++|||
T Consensus 477 ~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 477 KWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 999999999999999 9988899999999999999999999999999999 7899999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=7.2e-162 Score=1328.90 Aligned_cols=536 Identities=32% Similarity=0.608 Sum_probs=488.6
Q ss_pred ccCCCCCCCCCCccccccccCCchhhhhHHHHHHHHHHHHHHHHHHhhchhccccchhHHHHHHHhCcccccHHHHHHHH
Q 008817 12 TVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDEL 91 (552)
Q Consensus 12 ~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L 91 (552)
+.||++|||||+|||+||+ |++.+...+.+.+++++||++||+|+.+ ..|++++|+|||+||||||+|||++||+++|
T Consensus 4 ~~r~~~~~~ps~W~~~fl~-s~~~~~~~~~~~~~~~~Lk~~V~~~~~~-~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L 81 (549)
T 1n1b_A 4 QIRRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKE-KMEPVQQLELIHDLKYLGLSDFFQDEIKEIL 81 (549)
T ss_dssp -----------CCCHHHHH-HCCCSTTSHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCccc-CCCcchhhhHHHHHHHHHHHHHHHHHhc-ccCHHHHHHhHHHHHhCCchhhhHHHHHHHH
Confidence 4699999999999999995 4443334557889999999999999986 4589999999999999999999999999999
Q ss_pred HHHHhhccCC---CCCCCChhhhHHHHHHhhhcCcccccccccccccccc-cccccchhhHHHHHhHHhhcccCCCCcch
Q 008817 92 EKILDHLDND---NIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEG-KFKASMINDVQVMLSLYEAAHLAINGEDI 167 (552)
Q Consensus 92 ~~i~~~~~~~---~~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g-~F~~~l~~d~~glL~LyeAs~l~~~gE~i 167 (552)
++||+++... .....||++|||+|||||||||+||||||++|||++| +|++++++||+||||||||||+++|||+|
T Consensus 82 ~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~i 161 (549)
T 1n1b_A 82 GVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDT 161 (549)
T ss_dssp HHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHH
T ss_pred HHHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHH
Confidence 9999875321 1124699999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhc---C-CCcHHHHHHHhccCCccccchhhHHHHhHHhhcCCCCCCHHHHHHHhhhhHHHHHhh
Q 008817 168 LDEAIVFTTTHLKSMVSH---A-SPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAH 243 (552)
Q Consensus 168 L~ea~~ft~~~L~~~~~~---~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~h 243 (552)
||||+.||++||++.+.+ + +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++|
T Consensus 162 L~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~h 241 (549)
T 1n1b_A 162 LELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATH 241 (549)
T ss_dssp HHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHH
Confidence 999999999999999875 5 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHH
Q 008817 244 QKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEA 323 (552)
Q Consensus 244 q~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~a 323 (552)
|+||++++|||+++||.+++||+|||+++||||+ +|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+|
T Consensus 242 q~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~-~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~a 320 (549)
T 1n1b_A 242 QQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDT 320 (549)
T ss_dssp HHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHH-HHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 9999999999999999877999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhh
Q 008817 324 VKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVA 403 (552)
Q Consensus 324 i~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~ 403 (552)
|+|||+++++++|+|||+||.++++++++++.++.+.++. ++++|++++|++++++|++||+|+++||+||+||||++|
T Consensus 321 i~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~ 399 (549)
T 1n1b_A 321 FKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF-FCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIA 399 (549)
T ss_dssp HHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhc
Confidence 9999999999999999999999999999998887666666 799999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHhhcCCCCcHHH-HHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHHH
Q 008817 404 LGSSGVLTLATASFVDMGDIATKEA-FEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEA 482 (552)
Q Consensus 404 ~~S~g~~~~~~~~~~~~G~~l~~e~-~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~eeA 482 (552)
.+|+|+++++++++++||..+|+++ ++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|||
T Consensus 400 ~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA 479 (549)
T 1n1b_A 400 KISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEA 479 (549)
T ss_dssp HHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHH
T ss_pred ccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhcCCcC
Q 008817 483 KKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQP-LLMKDQVALVLKDPVT 551 (552)
Q Consensus 483 ~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~-~~~k~~i~~l~~~pi~ 551 (552)
+++++++|+++||+||+++++++++|++|+++++|+||++++||+++||||.| +.||++|++||++|||
T Consensus 480 ~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 480 VEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 99999999999999999999988999999999999999999999999999999 6899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=7.7e-161 Score=1324.50 Aligned_cols=535 Identities=33% Similarity=0.571 Sum_probs=467.4
Q ss_pred cccccCCCCCCCCCCccccccccCCchhhhhHHHHHHHHHHHHHHHHHHhhchhccccchhHHHHHHHhCcccccHHHHH
Q 008817 9 VEETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIE 88 (552)
Q Consensus 9 ~~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~d~~~~l~lID~lqrLGi~~hF~~EI~ 88 (552)
..+..||++|||||+|||+||++.+. ....+.+.+++++||++||+|+.+ ..|++++|+|||+||||||+|||++||+
T Consensus 30 ~~~~~r~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~~~Lk~~Vr~~~~~-~~d~~~~l~lID~lqrLGi~~hFe~EI~ 107 (569)
T 2j5c_A 30 DKDRWIRTGGYQPTLWDFSTIQSFDS-EYKEEKHLMRAAGMIDQVKMMLQE-EVDSIRRLELIDDLRRLGISCHFEREIV 107 (569)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred cccccCCCCCCCCCcCCcccccCCCc-hhhhHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhCCchhhhHHHHH
Confidence 34468999999999999999986432 333456789999999999999987 4589999999999999999999999999
Q ss_pred HHHHHHH-hhccCCCCCCCChhhhHHHHHHhhhcCcccccccccccccccc-cccccchhhHHHHHhHHhhcccCCCCcc
Q 008817 89 DELEKIL-DHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEG-KFKASMINDVQVMLSLYEAAHLAINGED 166 (552)
Q Consensus 89 ~~L~~i~-~~~~~~~~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g-~F~~~l~~d~~glL~LyeAs~l~~~gE~ 166 (552)
++|++|| +++. ....||++|||+|||||||||+||||||++|||++| +|++++.+||+||||||||||+++|||+
T Consensus 108 ~~L~~i~~~~~~---~~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~ 184 (569)
T 2j5c_A 108 EILNSKYYTNNE---IDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEE 184 (569)
T ss_dssp HHHHHHTTSSCC---SCTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHHhccC---cccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChH
Confidence 9999999 7652 135699999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhcC-CCcHHHHHHHhccCCccccchhhHHHHhHHhhcCCCCCCHHHHHHHhhhhHHHHHhhHH
Q 008817 167 ILDEAIVFTTTHLKSMVSHA-SPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQK 245 (552)
Q Consensus 167 iL~ea~~ft~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~ 245 (552)
|||||+.||++||++.+.++ +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+
T Consensus 185 iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~ 264 (569)
T 2j5c_A 185 TLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQ 264 (569)
T ss_dssp HHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999998776 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHh
Q 008817 246 EVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVK 325 (552)
Q Consensus 246 El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~ 325 (552)
||++++|||+++||.+++||||||+++||||+ +|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+
T Consensus 265 EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~-~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~ 343 (569)
T 2j5c_A 265 ELKEASRWWNSTGLVHELPFVRDRIVECYYWT-TGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQ 343 (569)
T ss_dssp HHHHHHHHHHHHTHHHHCC--CCCHHHHHHHH-HHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHH-HHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999878999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcc
Q 008817 326 RWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALG 405 (552)
Q Consensus 326 rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~ 405 (552)
|||+++++++|+|||+||.+|++++++++.++.+.+++ ++++|++++|++++++|++||+|+++||+||+||||++|.+
T Consensus 344 rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~v 422 (569)
T 2j5c_A 344 RWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGF-DSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWI 422 (569)
T ss_dssp HTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccc
Confidence 99999999999999999999999999999887776666 89999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHHHHHH
Q 008817 406 SSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKA 485 (552)
Q Consensus 406 S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~eeA~~~ 485 (552)
|+|+++++++++++||..+|+++++|+.++|++++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|||+++
T Consensus 423 Ssg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~ 502 (569)
T 2j5c_A 423 SIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREH 502 (569)
T ss_dssp HTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCc-hhHHHHHHHhhcCCcC
Q 008817 486 LRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDG-DRYTQP-LLMKDQVALVLKDPVT 551 (552)
Q Consensus 486 i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~~-~~~k~~i~~l~~~pi~ 551 (552)
++++|+++||+||++|++ +++|++|+++++|+||+++++|+++ ||||.| +.||++|++||++|||
T Consensus 503 i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 503 VRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 999999999999999999 8899999999999999999999999 999999 7899999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.9e-144 Score=1230.56 Aligned_cols=489 Identities=34% Similarity=0.605 Sum_probs=457.7
Q ss_pred hhccccchhHHHHHHHhCcccccHHHHHHHHHHHHhhccCC---CC---CCCChhhhHHHHHHhhhcCcccccccccccc
Q 008817 61 ADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDND---NI---GGDDFYTLSLSFRLLRQQGVKISCDVFEKFK 134 (552)
Q Consensus 61 ~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~---~~---~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~ 134 (552)
|.|++++|++||+||||||+|||++||+++|++||+.|.++ +. ...||++|||+|||||||||+||||||++|+
T Consensus 295 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 374 (817)
T 3sdr_A 295 PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFK 374 (817)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHh
Confidence 67999999999999999999999999999999999988652 11 1369999999999999999999999999999
Q ss_pred cccccccccc---hhhHHHHHhHHhhcccCCCCcchHHHHHHHHHHHHHhhhhc--------CCCcHHHHHHHhccCCcc
Q 008817 135 NNEGKFKASM---INDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSH--------ASPNLAEQINHALKLPLR 203 (552)
Q Consensus 135 d~~g~F~~~l---~~d~~glL~LyeAs~l~~~gE~iL~ea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~ 203 (552)
|++|+|++++ .+|++||||||||||+++|||+|||||+.||++||++.+.+ ++++|++||+|||++|||
T Consensus 375 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~ 454 (817)
T 3sdr_A 375 DANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWH 454 (817)
T ss_dssp CC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCST
T ss_pred hcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchh
Confidence 9999999865 69999999999999999999999999999999999998753 136799999999999999
Q ss_pred ccchhhHHHHhHHhhcCCCC------------CCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhccCCCChhhhhhHH
Q 008817 204 KALPRLEARYFLDVCSRGDR------------HDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIV 271 (552)
Q Consensus 204 ~~~~rlear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~v 271 (552)
+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++|| .++||||||++
T Consensus 455 ~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~v 533 (817)
T 3sdr_A 455 ASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPL 533 (817)
T ss_dssp TCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHH
T ss_pred ccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHH
Confidence 99999999999999999875 499999999999999999999999999999999999 69999999999
Q ss_pred HHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHH
Q 008817 272 ELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYD 351 (552)
Q Consensus 272 e~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ 351 (552)
|||||+ +|++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++
T Consensus 534 e~Yfw~-~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~ 612 (817)
T 3sdr_A 534 EFYFLV-AAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVH 612 (817)
T ss_dssp HHHHHH-HTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHH-HHHHHHhhcCCCCcHHHHH
Q 008817 352 KAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLT-LATASFVDMGDIATKEAFE 430 (552)
Q Consensus 352 ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~-~~~~~~~~~G~~l~~e~~e 430 (552)
|+++++.++++. ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++ ++.++++++|+.+|+|+++
T Consensus 613 e~~~~~~~~~g~-~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e 691 (817)
T 3sdr_A 613 EVAWEAEKEQGR-ELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALE 691 (817)
T ss_dssp HHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHH
T ss_pred HHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHh
Confidence 998776665455 79999999999999999999999999999999999999999999999 8888999999999999999
Q ss_pred hhh--cchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 008817 431 WLI--KKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQH-GVSEEEAKKALRIQVDNAWKDINEELLSPTAV 507 (552)
Q Consensus 431 ~~~--~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~-g~S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~ 507 (552)
|+. ++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+ |+|+|||+++++++|+++||+||++|++++++
T Consensus 692 ~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~ 771 (817)
T 3sdr_A 692 KVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDV 771 (817)
T ss_dssp TTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred cccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 975 456999999999999999999999999999999999999999 79999999999999999999999999998889
Q ss_pred CHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhcCCcCC
Q 008817 508 SLPLLERILNLARVCHFMYEDGDRYTQP-LLMKDQVALVLKDPVTL 552 (552)
Q Consensus 508 p~~~~~~~~n~aR~~~~~Y~~~D~~t~~-~~~k~~i~~l~~~pi~~ 552 (552)
|++|+++++|+||++++||+++||||.| .+||++|++||++||++
T Consensus 772 p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 772 PFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999998 68999999999999986
No 8
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=6.8e-144 Score=1221.75 Aligned_cols=486 Identities=30% Similarity=0.550 Sum_probs=460.8
Q ss_pred hhccccchhHHHHHHHhCcccccHHHHHHHHHHHHhhccCC---C---CCCCChhhhHHHHHHhhhcCcccccccccccc
Q 008817 61 ADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDND---N---IGGDDFYTLSLSFRLLRQQGVKISCDVFEKFK 134 (552)
Q Consensus 61 ~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~---~---~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~ 134 (552)
|.|++++|++||+||||||+|||++||+++|+++|++|.++ + ....||++|||+|||||||||+||||||++|+
T Consensus 267 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 346 (785)
T 3s9v_A 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFR 346 (785)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 67899999999999999999999999999999999988652 1 11369999999999999999999999999999
Q ss_pred cccccccccc---hhhHHHHHhHHhhcccCCCCcchHHHHHHHHHHHHHhhhhc--------CCCcHHHHHHHhccCCcc
Q 008817 135 NNEGKFKASM---INDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSH--------ASPNLAEQINHALKLPLR 203 (552)
Q Consensus 135 d~~g~F~~~l---~~d~~glL~LyeAs~l~~~gE~iL~ea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~ 203 (552)
|++|+|++++ .+|++||||||||||+++|||+|||||+.||++||++.+.+ ++++|+++|+|||++|||
T Consensus 347 d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~ 426 (785)
T 3s9v_A 347 DENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWH 426 (785)
T ss_dssp CTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGG
T ss_pred hcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccc
Confidence 9999999866 69999999999999999999999999999999999998753 467899999999999999
Q ss_pred ccchhhHHHHhHHhhcCCCC------------CCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhccCCCChhhhhhHH
Q 008817 204 KALPRLEARYFLDVCSRGDR------------HDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIV 271 (552)
Q Consensus 204 ~~~~rlear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~v 271 (552)
+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++|| .++||||||++
T Consensus 427 ~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~v 505 (785)
T 3s9v_A 427 KSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVT 505 (785)
T ss_dssp GCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHH
T ss_pred cCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHH
Confidence 99999999999999998875 499999999999999999999999999999999999 69999999999
Q ss_pred HHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHH
Q 008817 272 ELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYD 351 (552)
Q Consensus 272 e~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ 351 (552)
|||||+ +|++|||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++
T Consensus 506 e~Yfw~-~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~n 584 (785)
T 3s9v_A 506 EIYFSP-ASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFN 584 (785)
T ss_dssp HHHHHH-HHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHH
Q 008817 352 KAEESLAK-EGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFE 430 (552)
Q Consensus 352 ei~~~~~~-~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e 430 (552)
|+++++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++++++++|+.+|+|+++
T Consensus 585 ei~~~~~~~~g~--~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e 662 (785)
T 3s9v_A 585 DIAKEGRERQGR--DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLS 662 (785)
T ss_dssp HHHHHHHHHHTS--CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHT
T ss_pred HHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHh
Confidence 99877666 565 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 008817 431 WLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQH-GVSEEEAKKALRIQVDNAWKDINEELLSPTAVSL 509 (552)
Q Consensus 431 ~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~-g~S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~ 509 (552)
|+..+|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+ |+|+|+|+++++++|+++||+||+++++++ +|+
T Consensus 663 ~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~ 741 (785)
T 3s9v_A 663 KIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPD 741 (785)
T ss_dssp TTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCH
T ss_pred cccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCH
Confidence 976669999999999999999999999999999999999999999 999999999999999999999999999877 999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCc-h-hHHHHHHHhhcCCcC
Q 008817 510 PLLERILNLARVCHFMYEDGDRYTQP-L-LMKDQVALVLKDPVT 551 (552)
Q Consensus 510 ~~~~~~~n~aR~~~~~Y~~~D~~t~~-~-~~k~~i~~l~~~pi~ 551 (552)
+|+++++|+||++++||+++||||.| . +||++|++||++||.
T Consensus 742 ~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 742 IYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999 4 699999999999983
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=8.2e-144 Score=1218.12 Aligned_cols=486 Identities=29% Similarity=0.511 Sum_probs=457.3
Q ss_pred hhccccchhHHHHHHHhCcccccHHHHHHHHHHHHhhccCC---CC---CCCChhhhHHHHHHhhhcCcccccccccccc
Q 008817 61 ADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDND---NI---GGDDFYTLSLSFRLLRQQGVKISCDVFEKFK 134 (552)
Q Consensus 61 ~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~---~~---~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~ 134 (552)
|.|++++|++||+||||||+|||++||+++|++||+.|.++ +. ...||++|||+|||||||||+||||||++|+
T Consensus 243 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~ 322 (764)
T 3p5p_A 243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFK 322 (764)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGB
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhh
Confidence 67999999999999999999999999999999999988652 11 1369999999999999999999999999999
Q ss_pred ccccccccc---chhhHHHHHhHHhhcccCCCCcchHHHHHHHHHHHHHhhhhc---CCCcHHHHHHHhccCCccccchh
Q 008817 135 NNEGKFKAS---MINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSH---ASPNLAEQINHALKLPLRKALPR 208 (552)
Q Consensus 135 d~~g~F~~~---l~~d~~glL~LyeAs~l~~~gE~iL~ea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~r 208 (552)
|++|+|+++ +.+|++||||||||||+++|||+|||||+.||++||++.+.+ ++++|+++|+|||++|||+++||
T Consensus 323 d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~R 402 (764)
T 3p5p_A 323 DENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPR 402 (764)
T ss_dssp CTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHH
T ss_pred cCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchH
Confidence 999999974 589999999999999999999999999999999999998762 57889999999999999999999
Q ss_pred hHHHHhHHhhcCCCC------------CCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhccCCCChhhhhhHHHHHHH
Q 008817 209 LEARYFLDVCSRGDR------------HDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFW 276 (552)
Q Consensus 209 lear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~ 276 (552)
||||+||++|++++. +|++||||||||||+||++||+||++++||||++|| .++||||||++|||||
T Consensus 403 lear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw 481 (764)
T 3p5p_A 403 LEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFS 481 (764)
T ss_dssp HHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHH
Confidence 999999999998865 499999999999999999999999999999999999 6999999999999999
Q ss_pred HHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHH
Q 008817 277 ILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEES 356 (552)
Q Consensus 277 ~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~ 356 (552)
+ +| |||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||++++++||+|||+||.+|+++++|++++
T Consensus 482 ~-~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~ 558 (764)
T 3p5p_A 482 S-AT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNND 558 (764)
T ss_dssp T-CC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-Hh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 9 88 99999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHH-cCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcc
Q 008817 357 LAK-EGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKK 435 (552)
Q Consensus 357 ~~~-~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~ 435 (552)
+.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++++++++|+.+|+++++|+..+
T Consensus 559 ~~~~~g~--~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~ 636 (764)
T 3p5p_A 559 VVKVQGR--DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYP 636 (764)
T ss_dssp HHHHHSS--CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTT
T ss_pred HHHhcCc--chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhh
Confidence 665 666 69999999999999999999999999999999999999999999999999999999999999999997667
Q ss_pred hHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHH
Q 008817 436 PKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQH-GVSEEEAKKALRIQVDNAWKDINEELLS-PTAVSLPLLE 513 (552)
Q Consensus 436 p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~-g~S~eeA~~~i~~~i~~~wk~ln~e~l~-~~~~p~~~~~ 513 (552)
|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+ |+|+|+|+++++++|+++||+||+++++ ++++|++|++
T Consensus 637 ~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~ 716 (764)
T 3p5p_A 637 SNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKS 716 (764)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHH
T ss_pred HHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999 7999999999999999999999999997 7789999999
Q ss_pred HHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhcCCcCC
Q 008817 514 RILNLARVCHFMYEDGDRYTQP-LLMKDQVALVLKDPVTL 552 (552)
Q Consensus 514 ~~~n~aR~~~~~Y~~~D~~t~~-~~~k~~i~~l~~~pi~~ 552 (552)
+++|+||++++||+++||||.| .+||++|++||++||++
T Consensus 717 ~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 717 FIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999998 56999999999999974
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=5.6e-109 Score=925.24 Aligned_cols=450 Identities=20% Similarity=0.312 Sum_probs=389.6
Q ss_pred HHHHHHHHHHHHHHHhhc----hhccccchhHHHHHHHhCcccccHHHHHHHHHHHHhhccCCC---C---CCCChhhhH
Q 008817 43 QELYEALKQEVRMMITAT----ADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDN---I---GGDDFYTLS 112 (552)
Q Consensus 43 ~~~~~~lk~~vr~~l~~~----~~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~---~---~~~dl~~~a 112 (552)
.+..+-|+..|+++.... |.|++++|++||+||||||+|||++||+++|+++|+.|.++. . ...||++||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA 299 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA 299 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence 455677888888865432 689999999999999999999999999999999999885421 1 235999999
Q ss_pred HHHHHhhhcCccccccccccccccccccccc---chhhHHHHHhHHhhcccCCCCcchHHHHHHHHHHHHHhhhhc----
Q 008817 113 LSFRLLRQQGVKISCDVFEKFKNNEGKFKAS---MINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSH---- 185 (552)
Q Consensus 113 l~FRLLR~hGy~vS~dvf~~F~d~~g~F~~~---l~~d~~glL~LyeAs~l~~~gE~iL~ea~~ft~~~L~~~~~~---- 185 (552)
|+|||||||||+||||||++|+ ++|+|++. +.+|++||||||||||+++|||+|||||+.||++||++.+..
T Consensus 300 L~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 378 (727)
T 3pya_A 300 MAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELI 378 (727)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999 88999953 368999999999999999999999999999999999998752
Q ss_pred ----CCCcHHHHHHHhccCCccccchhhHHHHhHHhhcCCCC-------------CCHHHHHHHhhhhHHHHHhhHHHHH
Q 008817 186 ----ASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDR-------------HDKSLLKFAKLDFNLLQAAHQKEVS 248 (552)
Q Consensus 186 ----~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~-------------~n~~lLelAkldFn~~Q~~hq~El~ 248 (552)
++++|+++|+|||++|||+++||||||+||++|+++++ +|++||||||||||+||++||+||+
T Consensus 379 dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 458 (727)
T 3pya_A 379 DKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWD 458 (727)
T ss_dssp CSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHh
Confidence 24789999999999999999999999999999997654 6999999999999999999999999
Q ss_pred HHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhhcc
Q 008817 249 DMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWD 328 (552)
Q Consensus 249 ~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~rWd 328 (552)
+++||||++|| .+|||||||++|||||+ +|++|||+||.+|+++||++++++++||+||+|| |||++||+||+|||
T Consensus 459 ~lsrWwk~~~l-~~l~faRdr~ve~Yfw~-~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd 534 (727)
T 3pya_A 459 IFQKWYEENRL-SEWGVRRSELLECYYLA-AATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYI 534 (727)
T ss_dssp HHHHHHHHTTG-GGGTCCHHHHHHHHHHH-HTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC
T ss_pred hhheeHHhcCc-ccCCchhhHHHHHHHHH-HhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcc
Confidence 99999999999 57999999999999999 9999999999999999999999999999999999 99999999999999
Q ss_pred CC---------ccCc---CChh--HHHHHHHHHHHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008817 329 IG---------AIDT---LPEY--MKFIYKSLLDVYDKAEESLA-KEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFL 393 (552)
Q Consensus 329 ~~---------~~~~---lPe~--mk~~~~al~~~~~ei~~~~~-~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~i 393 (552)
.+ +++. +|+| ||+||.||++++||++.++. .+|+ ++++|++++|.++++++++||+ +
T Consensus 535 ~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~--~v~~~l~~~W~~~l~s~~~Ea~-~----- 606 (727)
T 3pya_A 535 ANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGR--DVNNLLYLSWGDWMEKWKLYGD-E----- 606 (727)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHSS-C-----
T ss_pred cccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHhcc-c-----
Confidence 74 3333 2877 99999999999999976544 4555 6999999999999999999997 2
Q ss_pred CChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHH
Q 008817 394 PKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMK 473 (552)
Q Consensus 394 PtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMk 473 (552)
+| |. +++.++.+..|..+++ ++.. +.+..|.++++.||||+||+.+|++|+
T Consensus 607 ---~E---------Ae-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~-------------- 657 (727)
T 3pya_A 607 ---GE---------GE-LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE-------------- 657 (727)
T ss_dssp ---CH---------HH-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH--------------
T ss_pred ---cc---------ee-eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH--------------
Confidence 33 22 4444444445888887 5554 566669999999999999999999977
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHhhhhhhcccCCCCCCchhHHHHHHHhhcCCcC
Q 008817 474 QHGVSEEEAKKALRIQVDNAWKDINEELLSPT--AVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVLKDPVT 551 (552)
Q Consensus 474 e~g~S~eeA~~~i~~~i~~~wk~ln~e~l~~~--~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~k~~i~~l~~~pi~ 551 (552)
.+++.+.|+..|++|++.+++++ .+|++| |+++|++.||.. ||++|. |+.+|.++|++||.
T Consensus 658 ---------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 658 ---------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTS-CHHHHHHHHHSCCC
T ss_pred ---------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHH-HHHHHHHHHcCccc
Confidence 55788999999999999999854 699999 999999999986 999998 99999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=9e-52 Score=430.06 Aligned_cols=253 Identities=17% Similarity=0.136 Sum_probs=228.4
Q ss_pred HHHhhHHHHHHHH-HHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHH-HHHHHHHHHHhhhcccccC--CCH
Q 008817 239 LQAAHQKEVSDMT-RWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRI-FMSKLISMISILDDTFDAY--GTY 314 (552)
Q Consensus 239 ~Q~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl-~laK~~~l~~iiDD~fD~~--gt~ 314 (552)
-+..|.+|++..+ +||+++|+.+ .||+|+|++++|||. ++++++|+++.+|+ ++||+++|+|++||+||.+ ||+
T Consensus 14 ~~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~-~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ 91 (337)
T 1ps1_A 14 RQSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYAD-LASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENP 91 (337)
T ss_dssp CCCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHH-HHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCH
Confidence 3467788887776 6999999964 699999999999999 89999999999999 9999999999999999998 699
Q ss_pred HHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008817 315 DELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLP 394 (552)
Q Consensus 315 eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iP 394 (552)
+|++.|++++.+|+.+ .+|+++++++.++.+++++++..+ +. ....+++++|+++++++++||+|+.+|++|
T Consensus 92 ee~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P 163 (337)
T 1ps1_A 92 EDTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGM----TP-AWCARSARHWRNYFDGYVDEAESRFWNAPC 163 (337)
T ss_dssp HHHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTS----CH-HHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccC----CH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999864 478999999999999999997543 23 468899999999999999999999999999
Q ss_pred -ChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHH
Q 008817 395 -KIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMK 473 (552)
Q Consensus 395 -tleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMk 473 (552)
|++||+++|++|+|++++++++++++|..+|+++++. +..++|+++++.++||+|||+||+||+++|+++|+|.|||+
T Consensus 164 ~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~ 242 (337)
T 1ps1_A 164 DSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRR 242 (337)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHH
T ss_pred CCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHH
Confidence 9999999999999999999999999999999987776 55668999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 008817 474 QHGVSEEEAKKALRIQVDNAWKDINEELL 502 (552)
Q Consensus 474 e~g~S~eeA~~~i~~~i~~~wk~ln~e~l 502 (552)
++|+|+|+|++++.++|+++||++|++.-
T Consensus 243 ~~g~s~eeA~~~v~~~i~~~~~~~~~~~~ 271 (337)
T 1ps1_A 243 EHGWSKSRSVSHMQNEVRARLEQYLLLES 271 (337)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999883
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=3.1e-49 Score=404.06 Aligned_cols=243 Identities=16% Similarity=0.157 Sum_probs=222.9
Q ss_pred HhhHHHHHHHH-HHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHH-HHHHHHHHHHhhhcccccCCCHHHHH
Q 008817 241 AAHQKEVSDMT-RWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRI-FMSKLISMISILDDTFDAYGTYDELK 318 (552)
Q Consensus 241 ~~hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl-~laK~~~l~~iiDD~fD~~gt~eEl~ 318 (552)
..|.+|+++.+ +||+++|+. +.||+|+|++++|||. ++++++|+++.+|+ ++||+++|+|++||+||. |+.+|++
T Consensus 12 ~P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~-~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~ 88 (300)
T 1di1_A 12 HPRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSE-VTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGE 88 (300)
T ss_dssp CTTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHH-HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcch-hhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHH
Confidence 46788988877 477999996 5799999999999999 88888899999999 999999999999999999 7899999
Q ss_pred HHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 008817 319 LFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEE 398 (552)
Q Consensus 319 ~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleE 398 (552)
.|++++.+|+.+ +.+|+++++++.++++++++++...+ .+.++.|+.++++|+ ||+|+..|++||++|
T Consensus 89 ~~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~---------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~ee 156 (300)
T 1di1_A 89 AYNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA---------ELANEVLEPTFVFMR-AQTDRARLSIHELGH 156 (300)
T ss_dssp HHHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHH
T ss_pred HHHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh---------HHHHHHHHHHHHHHH-HHhccccCCCCCHHH
Confidence 999999999875 47899999999999999999976542 235677999999997 899999999999999
Q ss_pred HhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCC--------CcchHHH
Q 008817 399 YEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGH--------IPSAVEC 470 (552)
Q Consensus 399 Yl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~--------~~n~V~c 470 (552)
||++|++|+|++++++++++++|..+|+++++ ..|+|+++++.++||+|||+||+||+++|+ ++|+|.|
T Consensus 157 Yl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~ 233 (300)
T 1di1_A 157 YLEYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKV 233 (300)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHH
T ss_pred HHHHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHH
Confidence 99999999999999999999999999999998 469999999999999999999999999999 7799999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 008817 471 YMKQHGVSEEEAKKALRIQVDNAWKDINEEL 501 (552)
Q Consensus 471 yMke~g~S~eeA~~~i~~~i~~~wk~ln~e~ 501 (552)
||+++|+|+|+|+++++++|+++||++|+..
T Consensus 234 ~m~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 234 LAEESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=5.2e-48 Score=398.98 Aligned_cols=248 Identities=18% Similarity=0.188 Sum_probs=221.9
Q ss_pred hHHHHHhhHHHHHHHHH-HHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHH-HHHHHHHHHHhhhcccccCCC
Q 008817 236 FNLLQAAHQKEVSDMTR-WWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRI-FMSKLISMISILDDTFDAYGT 313 (552)
Q Consensus 236 Fn~~Q~~hq~El~~lsr-Wwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl-~laK~~~l~~iiDD~fD~~gt 313 (552)
|..-...|.+|+++.+. ||+++|+..+ ||+|+|++++|||. ++++++|+++.+|+ ++||+++|+|++||+||. |+
T Consensus 21 ~p~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~-~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~ 97 (320)
T 3bny_A 21 FQPLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSR-VTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MS 97 (320)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHH-HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SC
T ss_pred CCCCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchh-hHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CC
Confidence 33445678889988875 7799999755 99999999999999 88888899999999 899999999999999999 78
Q ss_pred HHHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008817 314 YDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFL 393 (552)
Q Consensus 314 ~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~i 393 (552)
++|++.|++++.+|+.+ +.+|+++++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++
T Consensus 98 ~~e~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~--------~~~~~~~~~~~-~~~~e~~~~~~~~~ 165 (320)
T 3bny_A 98 FEEGSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R--------EMADEILEPVF-LFMRAQTDRTRARP 165 (320)
T ss_dssp HHHHHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H--------HHHHHTHHHHH-HHHHHTSCCCCCCC
T ss_pred hhhHHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H--------HHHHHHHHHHH-HHHHHHhhhccCCC
Confidence 99999999999999865 4679999999999999999997553 2 13455566677 59999999999999
Q ss_pred CChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCC--------Cc
Q 008817 394 PKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGH--------IP 465 (552)
Q Consensus 394 PtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~--------~~ 465 (552)
||++|||++|++|+|++++++++++++|..+|+++++ ..|+|+++++.++||+|||+||+||+++|+ ++
T Consensus 166 Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~ 242 (320)
T 3bny_A 166 MGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILC 242 (320)
T ss_dssp CCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CC
T ss_pred CCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhccccccccccc
Confidence 9999999999999999999999999999999999998 469999999999999999999999999998 78
Q ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 008817 466 SAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEEL 501 (552)
Q Consensus 466 n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~e~ 501 (552)
|+|.|||+++|+|+|+|++++++++++.|+++|+..
T Consensus 243 N~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 243 TSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp SHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=6e-46 Score=393.66 Aligned_cols=243 Identities=12% Similarity=0.033 Sum_probs=222.3
Q ss_pred HHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHH-HHHHHHHHHHhhhccccc--CC-CHHHHHHHHHHHh
Q 008817 250 MTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRI-FMSKLISMISILDDTFDA--YG-TYDELKLFVEAVK 325 (552)
Q Consensus 250 lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl-~laK~~~l~~iiDD~fD~--~g-t~eEl~~ft~ai~ 325 (552)
+.+||+++|+. ..+++|+|+++++||. ++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.
T Consensus 66 ~~~W~~~~gl~-~~~~~r~r~~~~~~~~-laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~ 143 (382)
T 3kb9_A 66 TRTWLLEKRLM-PADKVEEYADGLCYTD-LMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLH 143 (382)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHCHHH-HHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCHHHHHHHHhCCHHH-HHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHH
Confidence 45799999995 3488999999999999 88899999999999 999999999999999996 66 9999999999999
Q ss_pred hccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcc
Q 008817 326 RWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALG 405 (552)
Q Consensus 326 rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~ 405 (552)
++-.. ...+|++++++++++.+++++++..+.+ ....+++++|++++++|++||+|+.+|++||++|||++|++
T Consensus 144 ~~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~~-----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~ 217 (382)
T 3kb9_A 144 TALDS-PGDHLHHEDTLVAGFADSVRRLYAFLPA-----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRL 217 (382)
T ss_dssp HHHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHhcC-CCCCCCCCChHHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhh
Confidence 86222 2335888999999999999999754333 35889999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHHHHHH
Q 008817 406 SSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKA 485 (552)
Q Consensus 406 S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~eeA~~~ 485 (552)
|+|++++++++++++|..+|++++++ +..++|++++++++||+|||+||+||+++|+++|+|.|||+++|+|+|+|+++
T Consensus 218 s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~ 296 (382)
T 3kb9_A 218 TFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGE 296 (382)
T ss_dssp HTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHH
T ss_pred hcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999999999887 67788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 008817 486 LRIQVDNAWKDINEEL 501 (552)
Q Consensus 486 i~~~i~~~wk~ln~e~ 501 (552)
++++|+++||++|+..
T Consensus 297 v~~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 297 VRRRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999854
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=5.7e-33 Score=297.58 Aligned_cols=249 Identities=12% Similarity=0.072 Sum_probs=191.8
Q ss_pred hHHHHHHHH-HHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCc-chhHH-HHHHHHHHHHhhhcc-cccCC-CHHH-
Q 008817 243 HQKEVSDMT-RWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKY-AFGRI-FMSKLISMISILDDT-FDAYG-TYDE- 316 (552)
Q Consensus 243 hq~El~~ls-rWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~-s~~Rl-~laK~~~l~~iiDD~-fD~~g-t~eE- 316 (552)
|-+|++.-. .|..++++... +-.|+++..+.|.. ++++..|.. +..|+ .++|+++|+|++||. +|..| +.+.
T Consensus 127 ~~~ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~l-laa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~ 204 (433)
T 3v1v_A 127 RVEEVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGR-YMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGL 204 (433)
T ss_dssp HHHHHHHHHHHHHHHTSCCCC-----CCSCHHHHHH-HHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTH
T ss_pred CHHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 344665444 69999876433 34688888888888 555555999 79999 889999999999999 59755 3322
Q ss_pred HHHHHH---HHhhccCCccCcCCh-----hHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 008817 317 LKLFVE---AVKRWDIGAIDTLPE-----YMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWL 388 (552)
Q Consensus 317 l~~ft~---ai~rWd~~~~~~lPe-----~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~ 388 (552)
...+.. ++..... ..+.-|. .-..+-.+++++++++.+...+ ....+++++|++|+++|++||+|+
T Consensus 205 ~~~l~~a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~-----~q~~r~~~~~~~~~~a~l~EA~W~ 278 (433)
T 3v1v_A 205 GGRLLLAHTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATP-----SQSDRYRHDMARLHLGYLAEGAWA 278 (433)
T ss_dssp HHHHHHHHTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 1211110 0110010 0124578899999999755433 468899999999999999999999
Q ss_pred hcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcC-CCcch
Q 008817 389 HEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRG-HIPSA 467 (552)
Q Consensus 389 ~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG-~~~n~ 467 (552)
.+|++||+||||++|++| |+.++++++.+++|..+|++++++ +...+|++++++++||+|||+||+||+++| +++|+
T Consensus 279 ~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~ 356 (433)
T 3v1v_A 279 QTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNL 356 (433)
T ss_dssp HHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCH
T ss_pred hcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcH
Confidence 999999999999999999 777777778888999999998877 566779999999999999999999999995 78899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 008817 468 VECYMKQHGVSEEEAKKALRIQVDNAWKDINEEL 501 (552)
Q Consensus 468 V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~e~ 501 (552)
|.|||+++|+|+|+|++++++|++++++++.+..
T Consensus 357 V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 357 PVVIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988754
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.76 E-value=8.6e-18 Score=176.69 Aligned_cols=248 Identities=11% Similarity=0.021 Sum_probs=180.3
Q ss_pred HHHHHHHHhc------------cCCCChhhhhhHHHHHHHHHhhcccCCCcchhHH-HHHHHHHHHHhhhcccccCCCHH
Q 008817 249 DMTRWWIDLD------------FSTKLPYARDRIVELYFWILMGAYYEPKYAFGRI-FMSKLISMISILDDTFDAYGTYD 315 (552)
Q Consensus 249 ~lsrWwk~~~------------l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl-~laK~~~l~~iiDD~fD~~gt~e 315 (552)
+..+|..+.| +. .-|-..++++.+-.|. ++..| |..+...+ .++++.+|+|++||++|..+ +
T Consensus 34 ~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~l-aar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~ 108 (374)
T 1yyq_A 34 ENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGM-VVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--P 108 (374)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHH-HHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--H
T ss_pred HHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHH-HhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--H
Confidence 4447988888 52 2344667777777776 77766 99999998 88999999999999999654 6
Q ss_pred HHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008817 316 ELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPK 395 (552)
Q Consensus 316 El~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPt 395 (552)
++..|.+.+.+ ... |+ .++..++.+.+.++.+. .++ .+..++.++|.+++.++..|+.. .+..|+
T Consensus 109 ~l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~rl~~~----~~p-~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~ 173 (374)
T 1yyq_A 109 TMVNYFDDLQA--GRE----QA--HPWWALVNEHFPNVLRH----FGP-FCSLNLIRSTLDFFEGCWIEQYN--FGGFPG 173 (374)
T ss_dssp HHTTHHHHHHH--TCC----CS--SHHHHHHHHHHHHHHTT----SCH-HHHHHHHHHHHHHHHHHHHHTTC--CCCCTT
T ss_pred HHHHHHHHHhc--CCC----CC--ChHHHHHHHHHHHHHHh----cCH-HHHHHHHHHHHHHHHHHHHHHhc--cCCCCC
Confidence 67777776654 211 11 25666777777777433 244 67889999999999999999873 677899
Q ss_pred hHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhh-cCCCcchHHHHHHh
Q 008817 396 IEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQK-RGHIPSAVECYMKQ 474 (552)
Q Consensus 396 leEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~-rG~~~n~V~cyMke 474 (552)
.++|...++.++|+.-.... +..+..+.++... .+.+...+.....++.|+|||.||.||.. .|+.+|+|.+++.+
T Consensus 174 ~~~Y~~~rR~~sG~~E~~~~--~~~P~~~~~e~~~-~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~ 250 (374)
T 1yyq_A 174 SHDYPQFLRRMNGLGHCVGA--SLWPKEQFNERSL-FLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVS 250 (374)
T ss_dssp CTTHHHHHHHHHHCHHHHHH--TTCCTTTCCTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHH--hhccccccchhhc-chhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhc
Confidence 99999998888887644332 2223323222111 12234466777779999999999999998 49999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhh
Q 008817 475 HGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVC 522 (552)
Q Consensus 475 ~g~S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~ 522 (552)
+|+|.++|++++..++..+..++-+. +. ...|. +++.+-+..|.-
T Consensus 251 ~g~S~~eAl~~v~~~~~~~~~r~~~~-L~-~~~~~-~l~al~~~irG~ 295 (374)
T 1yyq_A 251 DEISLHEALEKLTQDTLHSSKQMVAV-FS-DKDPQ-VMDTIECFMHGY 295 (374)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHH-HS-SSCHH-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-hc-cCCHH-HHHHHHHHHhHh
Confidence 99999999999999999999888663 32 22332 455555555543
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.28 E-value=8.5e-05 Score=85.03 Aligned_cols=48 Identities=29% Similarity=0.466 Sum_probs=28.1
Q ss_pred ccccCCCCCCCCCCccccccccCCchhhhhHHHHHHHHHHHHHHHHHHh
Q 008817 10 EETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMIT 58 (552)
Q Consensus 10 ~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~ 58 (552)
..+.||+|||+||+|+++||++.. .+..++.+.+++++||++||+||.
T Consensus 21 ~~~~Rrsany~Ps~W~~~~i~sl~-~~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 21 SGLIRRTANPHPNVWGYDLVHSLK-SPYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp --------------CHHHHHHTCC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCCCCCCCeeeccC-CcccchhHHHHHHHHHHHHHHHhc
Confidence 335799999999999999999633 333567888999999999999997
No 18
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=83.97 E-value=35 Score=33.67 Aligned_cols=193 Identities=16% Similarity=0.109 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhh-ccCCcc--CcCChhHHHHHHHHHHHHHHHHHHHHHcCCCch
Q 008817 289 FGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKR-WDIGAI--DTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSY 365 (552)
Q Consensus 289 ~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~r-Wd~~~~--~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~ 365 (552)
..|-.+.-+-.|.-.+||+=|....+.+|+.+-+.+++ .+.... ...|+ .++..++.+++.+.. -+
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~~-------l~-- 106 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHKN-------IA-- 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHSC-------CC--
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHhC-------CC--
Confidence 45666666777888899999976544446666666554 122110 00022 366677776654431 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHH
Q 008817 366 GVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTI 445 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i 445 (552)
++.+.+++.++- .+......+|++|+......+.|.--.+++-.++... .++..+ .....+..
T Consensus 107 -----~~~~~~li~g~~---~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~-------~A~~lG~A 169 (293)
T 3acx_A 107 -----FQSFYNLIDTVY---KDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYD-------VARRLGES 169 (293)
T ss_dssp -----HHHHHHHHHHHH---HHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHH-------HHHHHHHH
T ss_pred -----HHHHHHHHHHHH---HHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHH-------HHHHHHHH
Confidence 233455666664 2334456789998888888777766555555554321 122222 22333333
Q ss_pred hHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 008817 446 GRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEE---------AKKALRIQVDNAWKDINEELLSPTAVSLP 510 (552)
Q Consensus 446 ~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~ee---------A~~~i~~~i~~~wk~ln~e~l~~~~~p~~ 510 (552)
.-|.|=+........+|-+- .=.=.|.++|+|.++ ..+-+..++..+..-+.+..--...+|..
T Consensus 170 lQltNilRDv~eD~~~gR~Y-LP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~ 242 (293)
T 3acx_A 170 LQLINILRDVGEDFENERIY-FSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIE 242 (293)
T ss_dssp HHHHHHHHCHHHHHHTTCCC-SCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTT
T ss_pred HHHHHHHHHHHHHHhCCcEE-eCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHH
Confidence 34444333334445667541 112246788999876 23445566666665555433222345543
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=82.43 E-value=5.3 Score=40.05 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHH--HhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATAS--FVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~--~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.++..+.++....+.+-..+..|... .||.++|++.-..-+|.-...++. -...| .+++..+.+ -.+-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag--~~~~~~~~l---~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGG--AEEELAERF---SHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 35666777778888888888888654 389999998765555554332211 12223 455544432 4566777
Q ss_pred HHHhHHccCccchHHHh-----hcCCCcchHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH-HHHHH
Q 008817 443 QTIGRLMDDIASHEFEQ-----KRGHIPSAVECYMKQHGV--SEEEAKKALRIQVDNAWKDINEELLSPTAVSL-PLLER 514 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE~-----~rG~~~n~V~cyMke~g~--S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~-~~~~~ 514 (552)
++..-+.||+..+.... ..|.. +...+|..+.+- ..+.|.+.+++.++++.+.+. .+|. +-++.
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~-------~lp~~~~~~~ 271 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE-------TFRECPARDK 271 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------C-CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT-------TSCCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-------hCCCchHHHH
Confidence 88889999998876543 23333 677777655421 134444444555555544332 2553 44555
Q ss_pred HHHHHhh
Q 008817 515 ILNLARV 521 (552)
Q Consensus 515 ~~n~aR~ 521 (552)
..++++.
T Consensus 272 L~~l~~~ 278 (295)
T 3ipi_A 272 LFQITDY 278 (295)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=81.40 E-value=9.6 Score=39.27 Aligned_cols=103 Identities=22% Similarity=0.209 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHH--HhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATAS--FVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~--~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
..+..+.+++..++.+-..+..|.... ||.++|++.-..-+|..+..++. -+..| .+++..+.+ -.+-...
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 467788888999999999999987655 99999998866555554433221 12223 455544433 4566777
Q ss_pred HHHhHHccCccchHHH-----------hhcCCCcchHHHHHHhc
Q 008817 443 QTIGRLMDDIASHEFE-----------QKRGHIPSAVECYMKQH 475 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyMke~ 475 (552)
++..-+.||+..+.-. ...|.. ++..+|..+.
T Consensus 233 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 8888889998777432 233444 6776776554
No 21
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=76.01 E-value=64 Score=31.83 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhhhcccccCC-C-HHHHHHHHHHHhh-ccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhH
Q 008817 291 RIFMSKLISMISILDDTFDAYG-T-YDELKLFVEAVKR-WDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGV 367 (552)
Q Consensus 291 Rl~laK~~~l~~iiDD~fD~~g-t-~eEl~~ft~ai~r-Wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~ 367 (552)
|-.+.-+-.|.=.+||+-|... . ...|+.+-+.+.+ .... |. .+++.+|.+++.+.. -+ .
T Consensus 41 R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~-----~~--~pv~~al~~~~~~~~-------l~---~ 103 (294)
T 4hd1_A 41 RPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGE-----AT--TPAFRALQFTIATCN-------LP---M 103 (294)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC-----CC--SHHHHHHHHHHHHHT-------CC---S
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CC--CHHHHHHHHHHHHcC-------CC---H
Confidence 4434455566778899999644 2 3345555555544 1111 22 257777777666542 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhH
Q 008817 368 KYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGR 447 (552)
Q Consensus 368 ~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~R 447 (552)
+.+.+++.++.... .....+|++|+......+.|.--.+++-.++.. +++.... ....+...-
T Consensus 104 ----~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~---~~~~~~~-------A~~lG~AlQ 166 (294)
T 4hd1_A 104 ----EPFLRLIEANRRDQ---RKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCL---DDERARL-------SDATCTALQ 166 (294)
T ss_dssp ----HHHHHHHHHHHHHH---HCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCC---SHHHHHH-------HHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcc---ccCCCCCHHHHHHHHHhccchHHHHHHHHhCCC---CHHHHHH-------HHHHHHHHH
Confidence 23445666665333 344568988888877777766544444444332 2332221 222333344
Q ss_pred HccCccchHHHhhcCCC--cchHHHHHHhcCCCHHH
Q 008817 448 LMDDIASHEFEQKRGHI--PSAVECYMKQHGVSEEE 481 (552)
Q Consensus 448 L~NDI~S~~kE~~rG~~--~n~V~cyMke~g~S~ee 481 (552)
|.|=+.......++|-+ + .-.|.++|+|.++
T Consensus 167 ltNilRDv~eD~~~gR~YlP---~~~l~~~gv~~~d 199 (294)
T 4hd1_A 167 VANHMQDIDRDLALGRIYVP---RADLEQFGATLDD 199 (294)
T ss_dssp HHHHHHTHHHHHHTTCBCSC---HHHHHTTTCCHHH
T ss_pred HHHHHHhchhhhccCceeCC---HHHHHHcCCCHHH
Confidence 44433444455567764 4 2357889999876
No 22
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=72.05 E-value=53 Score=33.41 Aligned_cols=105 Identities=11% Similarity=-0.016 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHH--HhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATAS--FVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~--~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
..+..+.++....+.+-+.+..|.. +..||.++|++.-..-+|.-+..++. -+..| .+++..+.+ -.+-+..
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSAG--VDVAKSEAL---RDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 4677788888899999998888853 34589999999866655554332221 12223 455544432 4566778
Q ss_pred HHHhHHccCccchHHHh-----------hcCCCcchHHHHHHhcC
Q 008817 443 QTIGRLMDDIASHEFEQ-----------KRGHIPSAVECYMKQHG 476 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE~-----------~rG~~~n~V~cyMke~g 476 (552)
++..-+.||+..+.-.. .+|.. ++..+|..+++
T Consensus 225 G~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~-TlP~i~al~~~ 268 (345)
T 3oyr_A 225 GLAFQLADDALDYGGATETLGKNAGDDFREGKA-TLPLLLAIARS 268 (345)
T ss_dssp HHHHHHHHHHTTC-------------------C-CHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCChhhcCCCccchhhcCch-HHHHHHHHHhC
Confidence 88889999998875432 22333 67667765543
No 23
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=71.41 E-value=80 Score=31.97 Aligned_cols=104 Identities=11% Similarity=-0.036 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
..+..+.++....+.+-+.+..|.. +..||.++|++.-..-+|..+..++ .-...| .+++..+.+ -.+-...
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIGG--APEDQVQAL---FDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 4677788888899999998988864 4468999999876655554433221 112223 455544332 4566777
Q ss_pred HHHhHHccCccchHHH-----------hhcCCCcchHHHHHHhc
Q 008817 443 QTIGRLMDDIASHEFE-----------QKRGHIPSAVECYMKQH 475 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyMke~ 475 (552)
++..-+.||+..+.-. ...|.. +...+|..+.
T Consensus 213 G~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 255 (341)
T 3mzv_A 213 GIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKL-TMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHC----------CCHHHHTTCC-CHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCcccccCch-hHHHHHHHHh
Confidence 8888889998876432 234444 6666666544
No 24
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=71.34 E-value=90 Score=31.48 Aligned_cols=86 Identities=13% Similarity=-0.033 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHH--HhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATAS--FVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~--~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
..+..+.++....+.+-..+..|.. +..||.++|++.-..-+|..+..++. -+..| .+++..+.+ -.+-...
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAFA---RLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 5677888889999999998888854 34589999999876666655433221 12223 455544332 4566777
Q ss_pred HHHhHHccCccchH
Q 008817 443 QTIGRLMDDIASHE 456 (552)
Q Consensus 443 ~~i~RL~NDI~S~~ 456 (552)
+...-+.||+..+.
T Consensus 207 G~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 207 GICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccCC
Confidence 88888999988875
No 25
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=65.98 E-value=59 Score=32.09 Aligned_cols=120 Identities=11% Similarity=0.009 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHHH
Q 008817 366 GVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAAQ 443 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~ 443 (552)
.+..+.++....+.+-..+..|......||.++|++.-..-+|......+ .-...| .+++ ..-++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT------XMXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh------HHHHHHHHHH
Confidence 56677777788899999898987654478999999986655554432221 112223 2333 1144667778
Q ss_pred HHhHHccCccchHHHhh-cCC-------CcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 444 TIGRLMDDIASHEFEQK-RGH-------IPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 444 ~i~RL~NDI~S~~kE~~-rG~-------~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
+..-+.||+..+.-..+ .|+ -.+...+| ..|.|.+.+++.++++.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88899999998865432 233 13444444 3678899999999999888766
No 26
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=65.19 E-value=36 Score=34.06 Aligned_cols=109 Identities=13% Similarity=0.023 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHhhhh-cccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 376 ESIMMYFSEAKWLHEGFLPKIEEYEGVA-LGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 376 ~~~~a~l~EAkW~~~g~iPtleEYl~~~-~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
..+.+-..+..|.. ..||.++|...- ..|++. +...+ .-...| .+++..+.+ -.+-...+...-+.||+
T Consensus 157 ~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L-~~~~~~~ga~lag--a~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 157 GMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGAL-IEFALIAGGVLAN--QTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp THHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHH-HHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45666666666643 378999999974 445443 32221 112223 355544433 45667777888889998
Q ss_pred cchHHH-----------hhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 453 ASHEFE-----------QKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 453 ~S~~kE-----------~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
..+.-. ..+|.. +...++ ..+.|.+.+++.++++.+.++.
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 776432 223333 555554 4788999999999999887765
No 27
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=65.18 E-value=40 Score=34.05 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhh--cCCCCcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 375 EESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVD--MGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 375 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
...+.|-..+..|... .||.++|+..-..-+|.-...+ +..| ++...+++..+.+ -.+-...+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3466777777777543 7899999998544444333222 2222 2222455544433 45667777788888998
Q ss_pred cchHHH-----------hhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 008817 453 ASHEFE-----------QKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDI 497 (552)
Q Consensus 453 ~S~~kE-----------~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~l 497 (552)
..+.-. ..+|.. +.+.+| ..|.|.+.+++.++++...+
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L 280 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESL 280 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 776432 223333 666655 47888888888888777554
No 28
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=64.97 E-value=27 Score=34.83 Aligned_cols=111 Identities=12% Similarity=0.042 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 375 EESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 375 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
...+.+-..+..|... .+|.++|++.-..-+|..+..++ .-...| .+++..+.+ -.+-...++..-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566777777777543 78999999986665555433221 112224 455554433 45667778888999999
Q ss_pred cchHHHh-----------hcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 453 ASHEFEQ-----------KRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 453 ~S~~kE~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
..+.-.. ..|.. +.+.++- .+.|.+.+.+.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 22333 5665554 577888888888888877654
No 29
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=61.49 E-value=53 Score=33.21 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHH--hhcCCCCcHHHHHhhhcchHHHHHHH
Q 008817 366 GVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASF--VDMGDIATKEAFEWLIKKPKIVVAAQ 443 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~--~~~G~~l~~e~~e~~~~~p~l~~~~~ 443 (552)
.+..+.++....+.+-..+..|.... ..|.++|++.-..-+|.....++.. ...| .+++..+.+ -.+-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKAL---SSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 56667777888999999999996543 4599999998666555544332211 2224 455544433 45677788
Q ss_pred HHhHHccCccchHHH-----------hhcCCCcchHHHHHHhc
Q 008817 444 TIGRLMDDIASHEFE-----------QKRGHIPSAVECYMKQH 475 (552)
Q Consensus 444 ~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyMke~ 475 (552)
+..-+.||+..+.-. ...|.. +...+|.-++
T Consensus 212 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 253 (342)
T 1wy0_A 212 IAFQIWDDVLDLIADEKKLGKPVGSDIRKGKK-TLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhCCCchhHHhCCCC-cHHHHHHHHh
Confidence 888999999877432 223444 6666666553
No 30
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=61.30 E-value=23 Score=35.32 Aligned_cols=109 Identities=17% Similarity=0.062 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHH--HHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 375 EESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLAT--ASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 375 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~--~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
...+.+-..+..|...+..||.++|+..-..-+|.-...+ +.-+..| .+++. .-.+-...+...-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~~------l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRGP------LTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCHH------HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHHH------HHHHHHHHHHHHHHHHHH
Confidence 4567777778888755678999999997544444333221 1112223 23331 134567778888899999
Q ss_pred cchHHHh-----------hcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008817 453 ASHEFEQ-----------KRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDIN 498 (552)
Q Consensus 453 ~S~~kE~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln 498 (552)
..+.-.. ..|.. +.+.++ ..+.|.+.+++.++++...++
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKA-TFVSLL------GLAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp C---------------------C-CHHHHH------CSSHHHHHHHHHHHHHHHHTG
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8875432 22332 566554 356788888888888876654
No 31
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=60.77 E-value=1e+02 Score=31.04 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
..+..+.++....+.+-+.+..|.. +..||.++|++.-..-+|..+..++ .-+..| .+++..+.+ -.+-...
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 216 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSCYQGAQLAG--APQSVIDRT---RDIGIAI 216 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 3566777888888888887877753 4568999999875554454432221 112223 355544433 4455667
Q ss_pred HHHhHHccCccchHH-----------HhhcCCCcchHHHHHHh
Q 008817 443 QTIGRLMDDIASHEF-----------EQKRGHIPSAVECYMKQ 474 (552)
Q Consensus 443 ~~i~RL~NDI~S~~k-----------E~~rG~~~n~V~cyMke 474 (552)
+...-+.||+..+.. ....|.. +...+|..+
T Consensus 217 G~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 217 GCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 777788888766532 3445665 666666655
No 32
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=58.64 E-value=29 Score=34.64 Aligned_cols=112 Identities=13% Similarity=0.025 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhh--cCCCCcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 375 EESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVD--MGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 375 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
...+.+-..+..|. +..||.++|+..-..-+|..+..+ +..| ++...+++..+. .-.+-...+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677777777875 457899999998544444333222 2222 121122332222 244567777778888998
Q ss_pred cchHHH-----------hhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 453 ASHEFE-----------QKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 453 ~S~~kE-----------~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
..+.-+ ..+|.. +.+.+|- .+.|.+.+++.++++.+.++.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~-T~p~l~~------l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKS-TYPALLG------LEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHTTC---------------CC-CHHHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCcchHHhcCCc-hHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 776432 223333 6665553 678888888888888876653
No 33
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=58.20 E-value=45 Score=33.32 Aligned_cols=109 Identities=17% Similarity=0.030 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccc
Q 008817 377 SIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIAS 454 (552)
Q Consensus 377 ~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S 454 (552)
.+.+-..+..|... .||.++|+..-..-+|..+..++ .-+..| ..+++..+.+ -.+-...+...-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag-~~~~~~~~~l---~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASVILGALASG-RAEKGELKAL---QTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 56666667777543 48999999885443333332221 112223 1155544433 4566777888899999988
Q ss_pred hHHHh-----------hcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008817 455 HEFEQ-----------KRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDIN 498 (552)
Q Consensus 455 ~~kE~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln 498 (552)
+.-+. ..|.. +.+.+| ..+.|.+.+++.++++.+.++
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKP-TYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHC------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCChHHhCCCcccHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 75432 22222 566555 468888888888888876544
No 34
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=56.10 E-value=63 Score=32.98 Aligned_cols=105 Identities=15% Similarity=0.053 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh----------cCC-CCChHHHhhhhcccchhHHHHHHH--HhhcCCCCcHHHHHhh
Q 008817 366 GVKYVKQTMEESIMMYFSEAKWLH----------EGF-LPKIEEYEGVALGSSGVLTLATAS--FVDMGDIATKEAFEWL 432 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW~~----------~g~-iPtleEYl~~~~~S~g~~~~~~~~--~~~~G~~l~~e~~e~~ 432 (552)
.+..+.++....+.+-..+..|.. .+. .||.++|++.-..-+|..+..++. -...| .+++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVS--DDRGLAEAA 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 566788888899999998988862 233 679999999866655554332221 11123 455544332
Q ss_pred hcchHHHHHHHHHhHHccCccchHHH-----------hhcCCCcchHHHHHHhc
Q 008817 433 IKKPKIVVAAQTIGRLMDDIASHEFE-----------QKRGHIPSAVECYMKQH 475 (552)
Q Consensus 433 ~~~p~l~~~~~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyMke~ 475 (552)
-.+-...++..-+.||+..+.-+ ..+|...+...++..+.
T Consensus 211 ---~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~ 261 (358)
T 4dhd_A 211 ---WNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSH 261 (358)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHh
Confidence 45667778888888998776432 23344425666665554
No 35
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=54.22 E-value=45 Score=33.84 Aligned_cols=111 Identities=15% Similarity=0.034 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 375 EESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 375 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
...+.+-..+..|... .+|.++|++.-..-+|..+...+ .-+..| .+++..+.+ -.+-...++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566777777777654 78999999987665555432221 112224 455544433 45667778888899998
Q ss_pred cchHHHh-----------hcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 453 ASHEFEQ-----------KRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 453 ~S~~kE~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
..+.-.. ..|.. +++.+| ..+.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8774322 22333 566554 2678888888888888876543
No 36
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=53.05 E-value=50 Score=33.24 Aligned_cols=111 Identities=15% Similarity=0.051 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhh--cCCCCcHHHHHhhhcchHHHHHHHHHhHHccCcc
Q 008817 376 ESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVD--MGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIA 453 (552)
Q Consensus 376 ~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~--~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 453 (552)
..+.+-..+..|. +..||.++|+..-..-+|.-...+ +..| ++...+++..+.+ -.+-...+...-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3566666666765 345899999998544444333222 2222 2222455544332 456677788888999988
Q ss_pred chHHH-----------hhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 454 SHEFE-----------QKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 454 S~~kE-----------~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
.+.-. ...|.. +.+.+| ..+.|.+.+++.++++.+.++.
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred hccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 77432 222333 666665 3688888888888888877654
No 37
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=50.17 E-value=82 Score=31.87 Aligned_cols=87 Identities=16% Similarity=-0.024 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.++..+.++....+.+-..+..|... ..+|.++|++.-..-+|..+..++ .-+..| .+++..+.+ -.+-...
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 226 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVAVLA---FEYGRNL 226 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHHHHH---HHHHHHH
Confidence 46777788888888888877776432 357999999985544444332221 112223 355544332 4456777
Q ss_pred HHHhHHccCccchHH
Q 008817 443 QTIGRLMDDIASHEF 457 (552)
Q Consensus 443 ~~i~RL~NDI~S~~k 457 (552)
++..-+.||+..+.-
T Consensus 227 G~aFQi~DD~lD~~g 241 (348)
T 3apz_A 227 GLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccC
Confidence 888888999888754
No 38
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=48.84 E-value=59 Score=32.62 Aligned_cols=112 Identities=8% Similarity=0.009 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHhhhhc-ccchhHHHHHHHHhhcCCC-CcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 375 EESIMMYFSEAKWLHEGFLPKIEEYEGVAL-GSSGVLTLATASFVDMGDI-ATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 375 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~-~S~g~~~~~~~~~~~~G~~-l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
...+.+-..+..|... ..||.++|+..-. .|++..-+.+.+ ..++.. .+++..+.+ -.+-...+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3556777777777532 3789999998854 454443222222 223332 556555433 45667778888889998
Q ss_pred cchHHH-----------hhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008817 453 ASHEFE-----------QKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDIN 498 (552)
Q Consensus 453 ~S~~kE-----------~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln 498 (552)
..+.-. ...|.. +.+.+| ..+.|.+.+++.++++.+.+.
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 877432 222333 555543 478888888888888775543
No 39
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=48.54 E-value=96 Score=30.68 Aligned_cols=111 Identities=15% Similarity=0.057 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhh--c-CCCCcHHHHHhhhcchHHHHHHHHHhHHccC
Q 008817 375 EESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVD--M-GDIATKEAFEWLIKKPKIVVAAQTIGRLMDD 451 (552)
Q Consensus 375 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~--~-G~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 451 (552)
...+.+-..+..|... .+|.++|+..-..-+|..+... ...| + + ..+++..+. .-.+-...++..-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~a-g~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAG-DKGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTT-HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhC-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3556777777777543 7899999998655444443222 2222 1 1 134443333 24566777888889999
Q ss_pred ccchHHHh-----------hcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 452 IASHEFEQ-----------KRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 452 I~S~~kE~-----------~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
+..+.-.. ..|.. +...+|- .+.|.+.+++.++++.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~~------l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKS-TYPALLG------LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCC-CHHHHHC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 88775322 23333 5665543 467888899999999888766
No 40
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=47.58 E-value=96 Score=31.57 Aligned_cols=85 Identities=16% Similarity=0.062 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHH--HhhcCCCCcHHHHHhhhcchHHHHHHH
Q 008817 366 GVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATAS--FVDMGDIATKEAFEWLIKKPKIVVAAQ 443 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~--~~~~G~~l~~e~~e~~~~~p~l~~~~~ 443 (552)
.+..+.++...++.+-..+..|... ..||.++|++.-..-+|..+...+. -...| .+++..+.+ -.+-+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACASSIGAVLGG--ADERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHH
Confidence 4566778888899999888888653 3689999999866655555432221 12223 455544433 45677778
Q ss_pred HHhHHccCccchH
Q 008817 444 TIGRLMDDIASHE 456 (552)
Q Consensus 444 ~i~RL~NDI~S~~ 456 (552)
+..-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888999988764
No 41
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=47.36 E-value=89 Score=31.47 Aligned_cols=111 Identities=13% Similarity=-0.002 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHhhhh-cccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccC
Q 008817 375 EESIMMYFSEAKWLHEGFLPKIEEYEGVA-LGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDD 451 (552)
Q Consensus 375 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~-~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~ND 451 (552)
...+.+-..+..|... ..||.++|+..- ..|++. ....+ .-+..| .+++..+.+ -.+-...++..-+.||
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L-~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DD 252 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGEL-IKASIMSGAVLAE--ASEGDIKKL---EGFGYKLGLAFQIKDD 252 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHH-HHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHH-HHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3567777777777542 368999999984 445443 32221 112223 455544332 4566777778888899
Q ss_pred ccchHHH-----------hhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 452 IASHEFE-----------QKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 452 I~S~~kE-----------~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
+..+.-. ...|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 253 iLD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 253 ILDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8776322 223333 555554 4688999999999999877754
No 42
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=45.53 E-value=1.3e+02 Score=29.69 Aligned_cols=111 Identities=16% Similarity=0.082 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhh---cCCCCcHHHHHhhhcchHHHHHHHHHhHHcc
Q 008817 374 MEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVD---MGDIATKEAFEWLIKKPKIVVAAQTIGRLMD 450 (552)
Q Consensus 374 w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~---~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~N 450 (552)
....+.+-..+..|. +..||.++|...-..-+|..+..+ ...| .| .+++..+.+ -.+-+..++..-+.|
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~lag--a~~~~~~~l---~~~g~~lGlaFQI~D 215 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAA-LKMGCEICE--LNNEESNQI---YKLGLKLGLIFQIND 215 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHH
Confidence 445566666666664 346899999998544444433222 1222 23 455544332 456677788888999
Q ss_pred CccchHHHh-hcCCC-------cchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008817 451 DIASHEFEQ-KRGHI-------PSAVECYMKQHGVSEEEAKKALRIQVDNAWKDIN 498 (552)
Q Consensus 451 DI~S~~kE~-~rG~~-------~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln 498 (552)
|+..+.-.. ..|+. .+.+.++ ..+.|.+..+++++++.+.++
T Consensus 216 DiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 216 DIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 988775432 22332 1444333 367788888888888887665
No 43
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=44.90 E-value=81 Score=31.54 Aligned_cols=110 Identities=9% Similarity=-0.046 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCcc
Q 008817 376 ESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIA 453 (552)
Q Consensus 376 ~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~ 453 (552)
..+.+-..+..|. +..||.++|...-..-+|..+..++ .-...| .+++..+. .-.+-...+...-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ--APEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3455656666664 3468999999984443343332221 112223 34443332 2456677777788889987
Q ss_pred chHHH-----------hhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008817 454 SHEFE-----------QKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINE 499 (552)
Q Consensus 454 S~~kE-----------~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~ 499 (552)
.+.-. ...|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 76422 223333 566555 3577888888888888877653
No 44
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=42.20 E-value=1.1e+02 Score=30.77 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhcCCCCChHHHhhhhcccchhH-HHHH--HHHhhcCCCCcHHHHHhhhcchHHHHH
Q 008817 366 GVKYVKQTMEESIMMYFSEAKW-LHEGFLPKIEEYEGVALGSSGVL-TLAT--ASFVDMGDIATKEAFEWLIKKPKIVVA 441 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW-~~~g~iPtleEYl~~~~~S~g~~-~~~~--~~~~~~G~~l~~e~~e~~~~~p~l~~~ 441 (552)
.+..+.++....+.+-+.+..| ......||.++|++.-..-+|.. +... +.-...|. +++.. .-.+-..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~~ 203 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGLR 203 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHHH
Confidence 5667788889999999999999 65435689999998866544444 3222 22222342 22222 2456677
Q ss_pred HHHHhHHccCccchHH----------HhhcCCCcchHHHHHHhc
Q 008817 442 AQTIGRLMDDIASHEF----------EQKRGHIPSAVECYMKQH 475 (552)
Q Consensus 442 ~~~i~RL~NDI~S~~k----------E~~rG~~~n~V~cyMke~ 475 (552)
.++..-+.||+..+.- ....|.. +...+|..+.
T Consensus 204 lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~-T~p~i~al~~ 246 (330)
T 1wmw_A 204 LGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKR-TLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHccCcccCCcccCCCcCchhhCCCC-CHHHHHHHHh
Confidence 7777788888877642 2344554 6666665543
No 45
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=41.51 E-value=62 Score=32.44 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHH-HhhhcchHHHHHHHHHhHHccC
Q 008817 375 EESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAF-EWLIKKPKIVVAAQTIGRLMDD 451 (552)
Q Consensus 375 ~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~-e~~~~~p~l~~~~~~i~RL~ND 451 (552)
...+.+-..+..|. +..||.++|+..-..-+|..+..++ .-+..| .+++.. +.+ -.+-...+...-+.||
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~DD 231 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLDD 231 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45566766666765 5678999999885444444332221 111123 334433 332 4566777888889999
Q ss_pred ccchHHH-hhcCCCc-------chHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008817 452 IASHEFE-QKRGHIP-------SAVECYMKQHGVSEEEAKKALRIQVDNAWKDIN 498 (552)
Q Consensus 452 I~S~~kE-~~rG~~~-------n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln 498 (552)
+..+.-+ ..-|+.. +.+.++ ..+.|.+..+++++++.+.+.
T Consensus 232 iLD~~gd~~~~GK~~g~~~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 232 IIDVTQDEEESGKTTHLDSAKNSFVNLL------GLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHC-------------CCSCHHHHH------CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCcccccccCcchHHHHH------HHHHHHHHHHHHHHHHHHHhh
Confidence 9887543 2234332 333332 367888888888888886654
No 46
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=39.73 E-value=2.9e+02 Score=27.23 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHH--hhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASF--VDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~--~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.....+.+.+...+.+-..+..|......||.++|++.-..-+|..+..++.. ...|. ++ ..-.+-...
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~--~~-------~l~~~g~~l 181 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDY--KE-------DLKPLLNTL 181 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CS-------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCC--hH-------HHHHHHHHH
Confidence 45667888889999999999999876668999999998766555443322211 11231 21 124466777
Q ss_pred HHHhHHccCccchH
Q 008817 443 QTIGRLMDDIASHE 456 (552)
Q Consensus 443 ~~i~RL~NDI~S~~ 456 (552)
++..-+.||+..+.
T Consensus 182 G~aFQi~DD~ld~~ 195 (301)
T 2q80_A 182 GLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 88888888887664
No 47
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=34.55 E-value=15 Score=41.71 Aligned_cols=41 Identities=22% Similarity=0.488 Sum_probs=15.6
Q ss_pred CCCCCCccccccccCCchhhhhHHHHHHHHHHHHHHHHHHh
Q 008817 18 GFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMIT 58 (552)
Q Consensus 18 ~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~ 58 (552)
+|+|++|++.++.....+........++++.|+++||+||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 78999999999984222211122356788999999999995
No 48
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=34.47 E-value=21 Score=26.18 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhchhccccchhHHHHHHHh
Q 008817 44 ELYEALKQEVRMMITATADKIADKLHLIDAVQRL 77 (552)
Q Consensus 44 ~~~~~lk~~vr~~l~~~~~d~~~~l~lID~lqrL 77 (552)
+++.=|.+|||.-|.. +.+.++++-++.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~-TensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKI-TENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCC-CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHH
Confidence 4566678888888875 78999999999999864
No 49
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=33.13 E-value=1.3e+02 Score=30.25 Aligned_cols=103 Identities=12% Similarity=-0.025 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC--CCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHH
Q 008817 366 GVKYVKQTMEESIMMYFSEAKWLHEG--FLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVA 441 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW~~~g--~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~ 441 (552)
.+..+.+....++.+-..+..|.... ..||.++|+..-..-+|..+..++ .-...|. +++ . ...-.+-..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPS--SHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC--cHH-H---HHHHHHHHH
Confidence 45667777888889999999997655 578999999986665554433222 1122232 221 1 233567788
Q ss_pred HHHHhHHccCccchHHH-----------hhcCCCcchHHHHHHhc
Q 008817 442 AQTIGRLMDDIASHEFE-----------QKRGHIPSAVECYMKQH 475 (552)
Q Consensus 442 ~~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyMke~ 475 (552)
.++..-+.||+..+.-+ ...|.. +...+|..+.
T Consensus 206 lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 249 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKL-SFPIVHALNF 249 (340)
T ss_dssp HHHHHHHHHHHHHHHC-----CCCTTHHHHTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhhCCCchhhHhcCCc-hHHHHHHHHh
Confidence 88888999999877532 233444 5666665443
No 50
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=31.03 E-value=2e+02 Score=29.40 Aligned_cols=105 Identities=12% Similarity=0.010 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC----CCChHHHhhhhcccchhH-HH--HHHHHhhcCCCCcHHHHHhhhcchHH
Q 008817 366 GVKYVKQTMEESIMMYFSEAKWLHEGF----LPKIEEYEGVALGSSGVL-TL--ATASFVDMGDIATKEAFEWLIKKPKI 438 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW~~~g~----iPtleEYl~~~~~S~g~~-~~--~~~~~~~~G~~l~~e~~e~~~~~p~l 438 (552)
.+..+.+.....+.+-+.+..|...+. .+|+++|+..-..-+|.. +. +.+.-+..| ..+++..+.+ -.+
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~a~~~~~~~l---~~~ 252 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-IDGEKEHANA---KKI 252 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-CCcHHHHHHH---HHH
Confidence 566777888888999998988876544 389999999866655544 22 222222223 1345544433 556
Q ss_pred HHHHHHHhHHccCccchHHHh----------hcCCCcchHHHHHHhc
Q 008817 439 VVAAQTIGRLMDDIASHEFEQ----------KRGHIPSAVECYMKQH 475 (552)
Q Consensus 439 ~~~~~~i~RL~NDI~S~~kE~----------~rG~~~n~V~cyMke~ 475 (552)
-...++..-+.||+..+.-.. ..|.. +.+.++.-+.
T Consensus 253 g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~-T~p~l~al~~ 298 (374)
T 2qis_A 253 LLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKC-SWLVVQCLQR 298 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCc-cHHHHHHHHh
Confidence 777888889999998774321 23333 6766666544
No 51
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=30.76 E-value=1.6e+02 Score=29.94 Aligned_cols=105 Identities=13% Similarity=-0.002 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC----CCChHHHhhhhcccchhH-HH--HHHHHhhcCCCCcHHHHHhhhcchHH
Q 008817 366 GVKYVKQTMEESIMMYFSEAKWLHEGF----LPKIEEYEGVALGSSGVL-TL--ATASFVDMGDIATKEAFEWLIKKPKI 438 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW~~~g~----iPtleEYl~~~~~S~g~~-~~--~~~~~~~~G~~l~~e~~e~~~~~p~l 438 (552)
.+..+.+.....+.+-+.+..|...+. .+|.++|+..-..-+|.. +. +.+.-+..|. .+++..+.+ -.+
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~~~~~~~~l---~~~ 245 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-DSKEEHENA---KAI 245 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-CCHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-ccHHHHHHH---HHH
Confidence 566777888888999999999876543 579999999866655544 21 2222222231 344544332 456
Q ss_pred HHHHHHHhHHccCccchHHH----------hhcCCCcchHHHHHHhc
Q 008817 439 VVAAQTIGRLMDDIASHEFE----------QKRGHIPSAVECYMKQH 475 (552)
Q Consensus 439 ~~~~~~i~RL~NDI~S~~kE----------~~rG~~~n~V~cyMke~ 475 (552)
-...+...-+.||+..+.-. ...|.. +.+.++.-+.
T Consensus 246 g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~-T~p~l~al~~ 291 (367)
T 1uby_A 246 LLEMGEYFQIQDDYLDCFGDPALTGAVGTDIQDNKC-SWLVVQCLQR 291 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCSSCCCCCSSSCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCchhhHHcCCc-hHHHHHHHHh
Confidence 77788888899998877533 223333 6666665544
No 52
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=30.38 E-value=49 Score=32.77 Aligned_cols=108 Identities=11% Similarity=0.001 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhhcC-CCCChHHHhhhh-cccchhHHHH-HHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 376 ESIMMYFSEAKWLHEG-FLPKIEEYEGVA-LGSSGVLTLA-TASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 376 ~~~~a~l~EAkW~~~g-~iPtleEYl~~~-~~S~g~~~~~-~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
..+.+-..+..|...+ ..+|.++|+..- ..|++.--+. .+.-...| .+++..+.+ -.+-...++..-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG--GSDEEIERL---RKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3556666666664321 346889999884 4455432111 11122223 455544433 45667778888999999
Q ss_pred cchHHHhhcCCCcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008817 453 ASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDIN 498 (552)
Q Consensus 453 ~S~~kE~~rG~~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln 498 (552)
..+..+. -.+...+| ..+.|.+.+.+.++++.+.+.
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 271 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLL 271 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8876443 23565555 457788888888887776554
No 53
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=24.63 E-value=3.2e+02 Score=27.17 Aligned_cols=101 Identities=7% Similarity=-0.032 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
.....+.++....+.+-+.+..|.. +..||.++|++.-..-+|..+..++ .-...|.. .+ ..-.+-...
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~------~l~~~g~~l 192 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AK------IYADFGLNF 192 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HH------HHHHHHHHH
Confidence 4667778888899999999989864 3568999999875555554433221 11222432 22 124456777
Q ss_pred HHHhHHccCccchHHH-----------hhcCCCcchHHHHHHhc
Q 008817 443 QTIGRLMDDIASHEFE-----------QKRGHIPSAVECYMKQH 475 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE-----------~~rG~~~n~V~cyMke~ 475 (552)
++..-+.||+..+.-. ...|.. +...+|..+.
T Consensus 193 G~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-T~p~i~al~~ 235 (315)
T 3tc1_A 193 GMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT-TLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCC-CHHHHHHHTT
T ss_pred HHHHHHHHHHhcccCCHHHhCCChhhHHHcCCh-hHHHHHHHHh
Confidence 7888888988776432 223333 6766766654
No 54
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=23.67 E-value=1.6e+02 Score=29.76 Aligned_cols=106 Identities=6% Similarity=-0.080 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-----------hcCC----CCChHHHhhhhcccchhH-HH--HHHHHhhcCCCCcH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWL-----------HEGF----LPKIEEYEGVALGSSGVL-TL--ATASFVDMGDIATK 426 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~-----------~~g~----iPtleEYl~~~~~S~g~~-~~--~~~~~~~~G~~l~~ 426 (552)
..+..+.+.....+.|-..+..|. ..+. .+|.++|+..-..-+|.. +. +.+.-+..|. .++
T Consensus 151 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~-~~~ 229 (362)
T 1yhl_A 151 DLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEA-AAS 229 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTC-GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCC-CCH
Confidence 356677788888999999898887 3223 489999999866655544 22 2222222331 233
Q ss_pred HHHHhhhcchHHHHHHHHHhHHccCccchHHH----------hhcCCCcchHHHHHHhc
Q 008817 427 EAFEWLIKKPKIVVAAQTIGRLMDDIASHEFE----------QKRGHIPSAVECYMKQH 475 (552)
Q Consensus 427 e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE----------~~rG~~~n~V~cyMke~ 475 (552)
+..+. .-.+-...++..-+.||+..+.-. ...|.. +...+|.-+.
T Consensus 230 ~~~~~---l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~-T~p~l~al~~ 284 (362)
T 1yhl_A 230 VEMNL---VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC-SWLAVTFLGK 284 (362)
T ss_dssp SCHHH---HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC-CHHHHHHHTT
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc-hHHHHHHHHh
Confidence 32222 245667778888899998877532 123333 6666666554
No 55
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.27 E-value=83 Score=27.34 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=41.2
Q ss_pred HhhHHHHHHHHHHHHHhccCCCCh-hhhhhHHHHHHHH-HhhcccCCC------cchhHHHHHHHHHHHHhhhcccc
Q 008817 241 AAHQKEVSDMTRWWIDLDFSTKLP-YARDRIVELYFWI-LMGAYYEPK------YAFGRIFMSKLISMISILDDTFD 309 (552)
Q Consensus 241 ~~hq~El~~lsrWwk~~~l~~~l~-faRdR~ve~yf~~-~~a~~feP~------~s~~Rl~laK~~~l~~iiDD~fD 309 (552)
.+..+|++++.+|..+++|..... ..|| +...|.-| ++.. |.|+ |+.+.-.-+|...|-++=--+|-
T Consensus 11 ~l~~ee~~el~~WL~~l~Ls~~~rn~rRD-FSdG~lvAEIl~~-y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~ 85 (127)
T 2ee7_A 11 SVDEEALHQLYLWVDNIPLSRPKRNLSRD-FSDGVLVAEVIKF-YFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLK 85 (127)
T ss_dssp SCCHHHHHHHHHHHHHSCCSCCSSCHHHH-HTTSHHHHHHHHH-HCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCchhhh-ccchhHHHHHHHH-HCcCcccccccCCCCcHHHHHHhHHHHHHHHHH
Confidence 345689999999999999854333 4555 55444432 1233 3365 55555566677777765445554
No 56
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=23.01 E-value=1.9e+02 Score=28.80 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHH--hhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASF--VDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~--~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
..+..+.++....+.|-..+..|.. +..||.++|++.-..-+|.....++.. ...| .+++..+.+ -.+-...
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 203 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRF-NYPVSFTAYLRRINRKTAILIEASCHLGALSSQ--LDEQSTYHI---KQFGHCI 203 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-CCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 4667777888889999998888864 335899999998666555553322211 2223 455544432 4566777
Q ss_pred HHHhHHccCccchH
Q 008817 443 QTIGRLMDDIASHE 456 (552)
Q Consensus 443 ~~i~RL~NDI~S~~ 456 (552)
+...-+.||+..+.
T Consensus 204 G~afQi~DD~ld~~ 217 (325)
T 3aqb_B 204 GMSYQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 88888899988774
No 57
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=22.88 E-value=94 Score=30.43 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHH--HhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCc
Q 008817 377 SIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATAS--FVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDI 452 (552)
Q Consensus 377 ~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~--~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI 452 (552)
.+.+-..+..|... .||+++|+..-..-+|.....++. -+..| .+++..+.+ -.+-...++..-+.||+
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~~lGailag--a~~~~~~~l---~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGAACGAILGG--AAEEEIQKL---RNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 45565656666433 789999998644434433322211 12223 455544433 45667778888889997
No 58
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=22.23 E-value=6e+02 Score=25.38 Aligned_cols=224 Identities=10% Similarity=0.075 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHhhhcccccCC-CHH----HHHHHHHHHhh--ccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCC
Q 008817 290 GRIFMSKLISMISILDDTFDAYG-TYD----ELKLFVEAVKR--WDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGR 362 (552)
Q Consensus 290 ~Rl~laK~~~l~~iiDD~fD~~g-t~e----El~~ft~ai~r--Wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~ 362 (552)
.|-.+.-+-.|.=..||+=|... ..+ .|+.|-+.+.. |.... ..|.. +.++..+-.+...+.. +. .
T Consensus 38 ~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~--~~~~~-~~ll~~~p~v~~~f~~-l~---~ 110 (343)
T 3vj8_A 38 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFME--SKEKD-RQVLEDFPTISLEFRN-LA---E 110 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCC--CCSTT-THHHHTHHHHHHHHHH-SC---H
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhcC--CChhh-HHHHhcCcHHHHHHHH-hH---H
Confidence 35555567778888999999754 443 34555555543 32211 11222 2222211112222210 00 0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 363 SSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 363 ~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
....-..+....++.++. .+. ....+|++|+...-..+.|.--.+++-.++....-++. .+ .........
T Consensus 111 --~~~~~i~~~~~~m~~gm~---~dl-~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~---~~~~~A~~l 180 (343)
T 3vj8_A 111 --KYQTVIADICRRMGIGMA---EFL-DKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VG---EDTERANSM 180 (343)
T ss_dssp --HHHHHHHHHHHHHHHHHH---HGG-GCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HH---HCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHH---Hhc-cCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hh---hHHHHHHHH
Confidence 011112233344555553 232 25678988888887777776665555555443211111 11 112344455
Q ss_pred HHHhHHccCccchHHHhhcCCC--cchHHHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCCCHH-
Q 008817 443 QTIGRLMDDIASHEFEQKRGHI--PSAVECYMKQHGVSEE---------EAKKALRIQVDNAWKDINEELLSPTAVSLP- 510 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE~~rG~~--~n~V~cyMke~g~S~e---------eA~~~i~~~i~~~wk~ln~e~l~~~~~p~~- 510 (552)
+...-+.|=+........+|-+ +. =.|.++|++.+ .+..-+..++..+..-+.+..--...+|..
T Consensus 181 G~AlQltNilRDv~eD~~~gR~YlP~---e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~~~ 257 (343)
T 3vj8_A 181 GLFLQKTNIIRDYLEDQQGGREFWPQ---EVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQS 257 (343)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCCSCH---HHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHhHHHHhCCCeeCCH---HHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 5555666655666666677765 32 24677888765 344555666666665444332111235542
Q ss_pred HHHHH---HHHHh-hhhhhcccCCCCC
Q 008817 511 LLERI---LNLAR-VCHFMYEDGDRYT 533 (552)
Q Consensus 511 ~~~~~---~n~aR-~~~~~Y~~~D~~t 533 (552)
....+ +-+|. ++.-+|++.|-|.
T Consensus 258 ~~~~~~ip~~lA~~tL~~i~~~~~v~~ 284 (343)
T 3vj8_A 258 VFNFCAIPQVMAIATLAACYNNQQVFK 284 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGGT
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcccc
Confidence 11111 22222 4555677666553
No 59
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=21.96 E-value=5e+02 Score=26.41 Aligned_cols=86 Identities=8% Similarity=-0.035 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCh-HHHhhhhcccchhH-H--HHHHHHhhcCCCCcHHH--HHhhhcchHHH
Q 008817 366 GVKYVKQTMEESIMMYFSEAKWLHEGFLPKI-EEYEGVALGSSGVL-T--LATASFVDMGDIATKEA--FEWLIKKPKIV 439 (552)
Q Consensus 366 ~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtl-eEYl~~~~~S~g~~-~--~~~~~~~~~G~~l~~e~--~e~~~~~p~l~ 439 (552)
.+..+.++....+.+-+.+..|...+..+++ ++|+..-..-+|.. + .+.+.-+..|. +++. . .....+-
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~~~~---~~l~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSSAQL---NLIEAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCCSST---TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhHHHH---HHHHHHH
Confidence 5667778888899998888888766534555 99998855544443 2 22222233342 2221 1 1224566
Q ss_pred HHHHHHhHHccCccchH
Q 008817 440 VAAQTIGRLMDDIASHE 456 (552)
Q Consensus 440 ~~~~~i~RL~NDI~S~~ 456 (552)
...++..-+.||+..+.
T Consensus 244 ~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 244 YKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888889988775
No 60
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=21.45 E-value=2.7e+02 Score=27.41 Aligned_cols=84 Identities=19% Similarity=0.067 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhcccchhHHHHHH--HHhhcCCCCcHHHHHhhhcchHHHHHH
Q 008817 365 YGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATA--SFVDMGDIATKEAFEWLIKKPKIVVAA 442 (552)
Q Consensus 365 ~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~--~~~~~G~~l~~e~~e~~~~~p~l~~~~ 442 (552)
..+..+.++....+.+-..+..|.... ||.++|++.-..-+|..+...+ .-...|. +++.+ -.+-...
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~~l------~~~g~~l 196 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LGEDL------YNLGVTI 196 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CHHHH------HHHHHHH
Confidence 467778888899999999999997654 9999999886665555432221 1122232 11211 3455667
Q ss_pred HHHhHHccCccchHHH
Q 008817 443 QTIGRLMDDIASHEFE 458 (552)
Q Consensus 443 ~~i~RL~NDI~S~~kE 458 (552)
++..-+.||+..+.-.
T Consensus 197 G~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 197 GTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCc
Confidence 7777888888776543
No 61
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=21.03 E-value=74 Score=24.94 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 008817 475 HGVSEEEAKKALRIQVDNAWKDI 497 (552)
Q Consensus 475 ~g~S~eeA~~~i~~~i~~~wk~l 497 (552)
||++.+||+..+.+.+++++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999888643
No 62
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.82 E-value=2.1e+02 Score=22.76 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=41.6
Q ss_pred hccccchhHHHHHHHhCcccccHHHHHHHHHHHHhhccCCCCC-CCChhhhHHHHHHhhhcCccccccccc
Q 008817 62 DKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIG-GDDFYTLSLSFRLLRQQGVKISCDVFE 131 (552)
Q Consensus 62 ~d~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~-~~dl~~~al~FRLLR~hGy~vS~dvf~ 131 (552)
+..+..=++...+.++|++ ++|++++++.+=. ++.+. ..+=...+|.-.-+.|+|+.++.+.+.
T Consensus 25 dG~Is~~el~~~l~~~~l~---~~~l~~i~~~~D~---d~dG~i~~~EF~~~~~~~~~~~~g~~~~~~~l~ 89 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSGLP---DLILGKIWDLADT---DGKGVLSKQEFFVALRLVACAQNGLEVSLSSLS 89 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSC---HHHHHHHHHHHCC---SSSSSCCSHHHHHHHHHHHHHTTTCCSSGGGCS
T ss_pred CCcCCHHHHHHHHHHcCCC---HHHHHHHHHHHCC---CCCCcCCHHHHHHHHHHHHHHHcCCCCChhhcc
Confidence 4456667788888999976 6677766654421 11111 123356677777889999999987654
Done!