BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008818
(552 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 22/143 (15%)
Query: 276 AVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 334
A+DP N+ + NLG AY++ GD +++ + +Q + D N+ A N L
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN------------L 49
Query: 335 AGAGANTGEGACLDQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCL 394
A G+ + A E W NL NAYY GD+ + +
Sbjct: 50 GNAYYKQGD---------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
Query: 395 EKAAKLEPNCMSTRYAVAVSRIK 417
+KA +L+PN + + ++ K
Sbjct: 101 QKALELDPNNAEAKQNLGNAKQK 123
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 241 MQSDTRQAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQ 300
++ D A W LG K +DPNN + NLG AY++ GD ++
Sbjct: 36 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95
Query: 301 SAKCFQDLILKDQNHPAALIN 321
+ + +Q + D N+ A N
Sbjct: 96 AIEYYQKALELDPNNAEAKQN 116
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 248 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 307
A W LG K +DPNN + NLG AY++ GD +++ + +Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 308 LILKDQNHPAALIN 321
+ D N+ A N
Sbjct: 69 ALELDPNNAEAWYN 82
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 423
W NL NAYY GD+ + + +KA +L+PN Y + + K + +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 423
W NL NAYY GD+ + + +KA +L+PN Y + + K + +
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 21/155 (13%)
Query: 248 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 307
A W LG K +DP + + NLG AY++ GD +++ + +Q
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 308 LILKDQNHPAALINYAALLLCKYGSVLAGAGANTGEGACLDQASAVNVAKECXXXXXXXX 367
+ D A N L A G+ + A E
Sbjct: 61 ALELDPRSAEAWYN------------LGNAYYKQGD---------YDEAIEYYQKALELD 99
Query: 368 XXXXHIWANLANAYYLTGDHRSSGKCLEKAAKLEP 402
W NL NAYY GD+ + + +KA +L+P
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 21/136 (15%)
Query: 282 CDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVLAGAGANT 341
+ NLG AY++ GD +++ + +Q + D A N L A
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN------------LGNAYYKQ 48
Query: 342 GEGACLDQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCLEKAAKLE 401
G+ + A E W NL NAYY GD+ + + +KA +L+
Sbjct: 49 GD---------YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99
Query: 402 PNCMSTRYAVAVSRIK 417
P Y + + K
Sbjct: 100 PRSAEAWYNLGNAYYK 115
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 241 MQSDTRQAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQ 300
++ D R A W LG K +DP + + NLG AY++ GD ++
Sbjct: 28 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87
Query: 301 SAKCFQDLILKDQNHPAALIN 321
+ + +Q + D A N
Sbjct: 88 AIEYYQKALELDPRSAEAWYN 108
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 241 MQSDTRQAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQ 300
++ D R A W LG K +DP + + NLG AY++ GD ++
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 301 SAKCFQ 306
+ + +Q
Sbjct: 122 AIEYYQ 127
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 56/171 (32%), Gaps = 44/171 (25%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQEPTEQLSWAG 433
W NL NAYY GD+ + + +KA +L+P Y + + K + +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE---------A 54
Query: 434 NEMASILREGDPVQIEPPIAWAGFAAVQKTHHEVAAAFETEENELSKMEECAGAGESAFL 493
E E DP E AW + A E + L L
Sbjct: 55 IEYYQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALE-------------L 98
Query: 494 DQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCLEKVL 544
D SA W NL NAYY GD+ + + +K L
Sbjct: 99 DPRSA-------------------EAWYNLGNAYYKQGDYDEAIEYYQKAL 130
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 22/134 (16%)
Query: 276 AVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 334
A+DP N+ + NLG AY++ GD +++ + +Q + D N+ +A N L
Sbjct: 2 AMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYN------------L 49
Query: 335 AGAGANTGEGACLDQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCL 394
A G D A+ E W NAYY GD++ + +
Sbjct: 50 GNAYYKQG-----DYQKAI----EYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDY 100
Query: 395 EKAAKLEPNCMSTR 408
+KA +L+PN +
Sbjct: 101 QKALELDPNNAKAK 114
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%)
Query: 248 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 307
A W LG K +DPNN NLG AY++ GD +++ + +Q
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 308 LILKDQNHPAALI 320
+ D N+ A
Sbjct: 69 ALELDPNNAKAWY 81
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE 420
W NL NAYY GD++ + + +KA +L+PN S Y + + K +
Sbjct: 12 WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGD 58
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAE 420
W NL NAYY GD++ + + +KA +L+PN Y + K +
Sbjct: 46 WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGD 92
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 30/78 (38%)
Query: 244 DTRQAVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAK 303
D A W LG K +DPNN G AY++ GD +++ +
Sbjct: 39 DPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIE 98
Query: 304 CFQDLILKDQNHPAALIN 321
+Q + D N+ A N
Sbjct: 99 DYQKALELDPNNAKAKQN 116
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 22/134 (16%)
Query: 276 AVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALINYAALLLCKYGSVL 334
A+DP N+ + NLG AY++ GD +++ + +Q + N+ A N L
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYN------------L 49
Query: 335 AGAGANTGEGACLDQASAVNVAKECXXXXXXXXXXXXHIWANLANAYYLTGDHRSSGKCL 394
A G+ + A E W NL NAYY GD+ + +
Sbjct: 50 GNAYYKQGD---------YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
Query: 395 EKAAKLEPNCMSTR 408
+KA +L PN +
Sbjct: 101 QKALELYPNNAEAK 114
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 423
W NL NAYY GD+ + + +KA +L PN Y + + K + +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 423
W NL NAYY GD+ + + +KA +L PN Y + + K + +
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 95
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 248 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 307
A W LG K + PNN + NLG AY++ GD +++ + +Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 308 LILKDQNHPAALIN 321
+ N+ A N
Sbjct: 69 ALELYPNNAEAWYN 82
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 248 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 306
A W LG K + PNN + NLG AY++ GD +++ + +Q
Sbjct: 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 520 WANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550
W NL NAYY GD+ + + +K L +Y ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELYPNN 42
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 520 WANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550
W NL NAYY GD+ + + +K L +Y ++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELYPNN 76
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 520 WANLANAYYLTGDHRSSGKCLEKVLMVYCSS 550
W NL NAYY GD+ + + +K L +Y ++
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 248 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQD 307
A W LG K +DPNN + NLG AY++ GD +++ + +Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 308 LILKDQNHPAALIN 321
+ D N+ A N
Sbjct: 69 ALELDPNNAEAKQN 82
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 423
W NL NAYY GD+ + + +KA +L+PN Y + + K + +
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIK 417
W NL NAYY GD+ + + +KA +L+PN + + ++ K
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 276 AVDP-NNCDCIGNLGIAYFQSGDMEQSAKCFQDLILKDQNHPAALIN 321
A+DP N+ + NLG AY++ GD +++ + +Q + D N+ A N
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 48
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEPNCMSTRYAVAVSRIKDAERSQ 423
W NL NAYY GD+ + + +KA +L+P Y + + K + +
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 55
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 248 AVVWNTLGLILLKXXXXXXXXXXXXXXXAVDPNNCDCIGNLGIAYFQSGDMEQSAKCFQ 306
A W LG K +DP + + NLG AY++ GD +++ + +Q
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 61
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 374 WANLANAYYLTGDHRSSGKCLEKAAKLEP 402
W NL NAYY GD+ + + +KA +L+P
Sbjct: 40 WYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 157 AHAHFLLGLMYQRLGQPLKAVSSYEKAEEI 186
A A++ LGL+Y +G+ KA+ +YEK I
Sbjct: 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,407,584
Number of Sequences: 62578
Number of extensions: 450727
Number of successful extensions: 885
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 68
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)